Query 004618
Match_columns 741
No_of_seqs 159 out of 286
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 02:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.5 2.6E-14 5.7E-19 117.1 2.8 47 2-48 4-57 (57)
2 KOG0724 Zuotin and related mol 98.9 1.8E-10 3.9E-15 118.8 -0.1 79 3-87 55-134 (335)
3 PF00249 Myb_DNA-binding: Myb- 98.8 2.7E-09 6E-14 82.8 2.0 42 3-44 3-47 (48)
4 cd00167 SANT 'SWI3, ADA2, N-Co 98.2 6.2E-07 1.3E-11 65.3 2.1 42 4-45 2-45 (45)
5 smart00717 SANT SANT SWI3, AD 98.0 1.8E-06 3.8E-11 63.6 1.6 43 3-45 3-47 (49)
6 PF13921 Myb_DNA-bind_6: Myb-l 97.2 0.00011 2.4E-09 58.8 1.0 41 4-44 1-42 (60)
7 KOG0457 Histone acetyltransfer 96.6 0.0011 2.4E-08 73.2 2.2 44 4-47 75-120 (438)
8 COG5259 RSC8 RSC chromatin rem 96.2 0.0019 4.2E-08 72.0 1.2 38 3-40 281-319 (531)
9 PLN03162 golden-2 like transcr 95.5 0.016 3.4E-07 63.8 4.8 80 2-81 238-326 (526)
10 KOG1279 Chromatin remodeling f 94.4 0.021 4.6E-07 64.6 2.0 44 3-50 255-299 (506)
11 PLN03212 Transcription repress 93.3 0.15 3.3E-06 53.6 5.7 43 4-46 81-124 (249)
12 COG5114 Histone acetyltransfer 93.2 0.089 1.9E-06 57.3 4.1 44 4-47 66-111 (432)
13 PLN03091 hypothetical protein; 91.7 0.34 7.3E-06 54.6 6.2 45 4-48 70-115 (459)
14 KOG4329 DNA-binding protein [G 90.1 0.14 3.1E-06 56.5 1.6 38 1-38 277-316 (445)
15 KOG0724 Zuotin and related mol 89.3 0.27 5.8E-06 51.7 2.8 49 3-51 166-222 (335)
16 smart00426 TEA TEA domain. 87.2 0.5 1.1E-05 41.5 2.6 40 3-42 5-66 (68)
17 PLN03212 Transcription repress 86.3 0.42 9.2E-06 50.4 2.1 43 3-45 27-72 (249)
18 PLN03091 hypothetical protein; 85.2 0.44 9.5E-06 53.7 1.6 39 3-41 16-57 (459)
19 KOG3841 TEF-1 and related tran 82.9 1.8 3.9E-05 48.4 5.0 51 3-53 78-150 (455)
20 KOG4468 Polycomb-group transcr 74.7 2.5 5.5E-05 49.5 3.2 50 3-52 90-150 (782)
21 PLN03142 Probable chromatin-re 71.1 2.5 5.4E-05 52.1 2.3 46 3-48 826-873 (1033)
22 KOG3554 Histone deacetylase co 71.0 3 6.4E-05 47.9 2.6 66 1-69 285-358 (693)
23 PF01285 TEA: TEA/ATTS domain 57.8 8.3 0.00018 43.5 3.0 42 3-44 51-112 (431)
24 KOG0049 Transcription factor, 51.3 14 0.0003 44.2 3.5 47 4-50 415-463 (939)
25 COG4425 Predicted membrane pro 50.4 16 0.00034 42.4 3.6 50 367-427 87-136 (588)
26 KOG0049 Transcription factor, 48.8 17 0.00037 43.6 3.6 49 3-54 362-412 (939)
27 KOG0048 Transcription factor, 47.0 11 0.00023 38.7 1.6 38 3-40 64-102 (238)
28 COG5118 BDP1 Transcription ini 39.3 14 0.0003 41.8 1.1 38 2-39 366-404 (507)
29 COG0315 MoaC Molybdenum cofact 37.9 27 0.00059 35.2 2.7 27 412-438 55-81 (157)
30 KOG1194 Predicted DNA-binding 31.5 35 0.00075 39.5 2.6 36 3-38 189-225 (534)
31 cd01420 MoaC_PE MoaC family, p 29.7 54 0.0012 32.5 3.3 26 412-437 41-66 (140)
32 KOG4167 Predicted DNA-binding 29.6 24 0.00051 42.8 1.0 42 2-46 620-662 (907)
33 PRK12343 putative molybdenum c 29.5 50 0.0011 33.1 3.0 26 413-438 50-75 (151)
34 KOG0048 Transcription factor, 29.2 40 0.00088 34.7 2.5 37 3-39 11-50 (238)
35 cd00528 MoaC MoaC family. Memb 27.2 60 0.0013 32.1 3.1 27 412-438 41-67 (136)
36 TIGR00581 moaC molybdenum cofa 27.0 57 0.0012 32.6 2.9 26 413-438 53-78 (147)
37 cd01419 MoaC_A MoaC family, ar 23.6 77 0.0017 31.5 3.1 26 412-437 41-66 (141)
38 PF13825 Paramyxo_PNT: Paramyx 23.2 2.5E+02 0.0053 31.3 7.0 65 43-107 185-250 (309)
39 PRK09364 moaC molybdenum cofac 22.1 83 0.0018 31.8 3.0 25 414-438 57-81 (159)
40 PF04504 DUF573: Protein of un 21.2 76 0.0017 29.1 2.4 48 3-50 6-71 (98)
41 KOG3576 Ovo and related transc 21.1 36 0.00079 36.1 0.4 25 695-719 161-196 (267)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.46 E-value=2.6e-14 Score=117.09 Aligned_cols=47 Identities=23% Similarity=0.101 Sum_probs=43.0
Q ss_pred cchhhhHHHHHHHHHHhcCc-CC---cee-Ee-eccc-chHHHHHHHHHHHHHH
Q 004618 2 LLFSIFDLIGDLSRLFFLCF-TW---FRA-EH-IGTK-KAVQIRSHAQKFFSKL 48 (741)
Q Consensus 2 ~l~s~~eh~~FLeaL~lyGR-dW---kkI-e~-VgTR-T~~QIRSHAQKYF~Kl 48 (741)
+.|+.|||.+||+||+.||+ +| ++| ++ +.|+ |..||+|||||||+|+
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~ 57 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 57999999999999999999 99 999 65 4588 9999999999999873
No 2
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-10 Score=118.82 Aligned_cols=79 Identities=24% Similarity=0.055 Sum_probs=72.5
Q ss_pred chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHHHHHHhhhcCCCCCCccccCCCCCCCCCCCCCCCCC
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYP 81 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~~~~G~~~~~~~~i~iPPpRpKRkp~hpYP 81 (741)
.|..++|.+|+++|.+|++.|.+| +|+|.++.+|||+|+|+||-++.+.. .+.+..|.||+||++||+.||||
T Consensus 55 ~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~k~~~~y~ 128 (335)
T KOG0724|consen 55 RRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSD------TSLAEVEEFYNFWPKFKSWRQYP 128 (335)
T ss_pred ccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccc------cccccccccCCccccccccccCC
Confidence 388999999999999999999999 99999999999999999999998875 45567889999999999999999
Q ss_pred CCCCCC
Q 004618 82 RKTCTN 87 (741)
Q Consensus 82 rK~~~~ 87 (741)
++...+
T Consensus 129 ~~~~~~ 134 (335)
T KOG0724|consen 129 QKDEPD 134 (335)
T ss_pred CCCCcc
Confidence 998654
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.77 E-value=2.7e-09 Score=82.75 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=39.4
Q ss_pred chhhhHHHHHHHHHHhcCcC-Ccee-Eeec-ccchHHHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCFT-WFRA-EHIG-TKKAVQIRSHAQKF 44 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRd-WkkI-e~Vg-TRT~~QIRSHAQKY 44 (741)
-|+.+|+.+|++|+++||.+ |++| .+|+ +||..|+++|.++|
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 49999999999999999998 9999 9999 99999999999987
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.22 E-value=6.2e-07 Score=65.28 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHhcC-cCCcee-EeecccchHHHHHHHHHHH
Q 004618 4 FSIFDLIGDLSRLFFLC-FTWFRA-EHIGTKKAVQIRSHAQKFF 45 (741)
Q Consensus 4 ~s~~eh~~FLeaL~lyG-RdWkkI-e~VgTRT~~QIRSHAQKYF 45 (741)
|+.+|+..|+.++..|| .+|..| .++++||..||+.|.++++
T Consensus 2 Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 99999999999999999 899999 9999999999999988764
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.05 E-value=1.8e-06 Score=63.57 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=40.3
Q ss_pred chhhhHHHHHHHHHHhcC-cCCcee-EeecccchHHHHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLC-FTWFRA-EHIGTKKAVQIRSHAQKFF 45 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyG-RdWkkI-e~VgTRT~~QIRSHAQKYF 45 (741)
.|+.+|...|+.++..|| .+|..| .++++||..||+.+...++
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 599999999999999999 899999 9999999999999887765
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.23 E-value=0.00011 Score=58.79 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHH
Q 004618 4 FSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKF 44 (741)
Q Consensus 4 ~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKY 44 (741)
|+.+|-.+.+++++.||.+|++| +++|+||..||+.+-.++
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~ 42 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNH 42 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHH
Confidence 88999999999999999999999 999999999999887763
No 7
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.57 E-value=0.0011 Score=73.24 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHhcCc-CCcee-EeecccchHHHHHHHHHHHHH
Q 004618 4 FSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSK 47 (741)
Q Consensus 4 ~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~K 47 (741)
|.-+|.+++|+|+..||- +|..| .||||||..++..|=-|+|..
T Consensus 75 WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 75 WTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 999999999999999999 89999 999999999999999999874
No 8
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.15 E-value=0.0019 Score=72.02 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=36.0
Q ss_pred chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSH 40 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSH 40 (741)
-||-.|....|||+++||-||.+| .||||||+-|---|
T Consensus 281 ~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~ 319 (531)
T COG5259 281 NWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILH 319 (531)
T ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHH
Confidence 499999999999999999999999 99999999998766
No 9
>PLN03162 golden-2 like transcription factor; Provisional
Probab=95.53 E-value=0.016 Score=63.77 Aligned_cols=80 Identities=20% Similarity=0.061 Sum_probs=56.3
Q ss_pred cchhhhHHHHHHHHHHhcCc---CCcee-Ee--ecccchHHHHHHHHHHHHHHHHhhhcC---CCCCCccccCCCCCCCC
Q 004618 2 LLFSIFDLIGDLSRLFFLCF---TWFRA-EH--IGTKKAVQIRSHAQKFFSKLEKEALSK---GVPIGQAIDIDIPPPRP 72 (741)
Q Consensus 2 ~l~s~~eh~~FLeaL~lyGR---dWkkI-e~--VgTRT~~QIRSHAQKYF~Kl~r~~~~~---G~~~~~~~~i~iPPpRp 72 (741)
|.|+.|=|.+|++|+...|- .=|+| ++ |.-=|..+|.||-|||.+.+.+..... +...........|-+|-
T Consensus 238 LrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~~~~P~~rs 317 (526)
T PLN03162 238 VDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYTQAPWPRS 317 (526)
T ss_pred ccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhhccCCcccC
Confidence 68999999999999999993 35677 55 556689999999999999887544332 22222223344455666
Q ss_pred CCCCCCCCC
Q 004618 73 KRKPRNPYP 81 (741)
Q Consensus 73 KRkp~hpYP 81 (741)
+|+..||+=
T Consensus 318 ~~~~g~p~~ 326 (526)
T PLN03162 318 SRRDGLPYL 326 (526)
T ss_pred CCCCCCccc
Confidence 777666653
No 10
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=94.36 E-value=0.021 Score=64.63 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=39.1
Q ss_pred chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEK 50 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r 50 (741)
-|+-.|-.+-|||+++||-+|.+| .||||||.-|--.| |++|-.
T Consensus 255 ~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~k----FL~LPi 299 (506)
T KOG1279|consen 255 NWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILK----FLRLPI 299 (506)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHH----HHhcCc
Confidence 399999999999999999999999 99999999998887 555443
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=93.26 E-value=0.15 Score=53.60 Aligned_cols=43 Identities=12% Similarity=-0.020 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHH
Q 004618 4 FSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFS 46 (741)
Q Consensus 4 ~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~ 46 (741)
|+.||-..-|+....||..|.+| .++..||..||+-+=..+..
T Consensus 81 WT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 81 ITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred CChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999 99999999999876443333
No 12
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=93.25 E-value=0.089 Score=57.27 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHhcCc-CCcee-EeecccchHHHHHHHHHHHHH
Q 004618 4 FSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSK 47 (741)
Q Consensus 4 ~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~K 47 (741)
|..+|...|+++++..|= +|..| .|||+|+-.-|++|--|||..
T Consensus 66 WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 66 WGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred cCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 889999999999999998 89999 999999999999999999873
No 13
>PLN03091 hypothetical protein; Provisional
Probab=91.65 E-value=0.34 Score=54.59 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHHHH
Q 004618 4 FSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKL 48 (741)
Q Consensus 4 ~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl 48 (741)
|+.||-.+.|+..+.||..|.+| .++.-||..||+-+=.....|.
T Consensus 70 WT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 70 FSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred CCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999987655444443
No 14
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=90.09 E-value=0.14 Score=56.46 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=34.9
Q ss_pred CcchhhhHHHHHHHHHHhcCcCCcee--EeecccchHHHH
Q 004618 1 MLLFSIFDLIGDLSRLFFLCFTWFRA--EHIGTKKAVQIR 38 (741)
Q Consensus 1 ~~l~s~~eh~~FLeaL~lyGRdWkkI--e~VgTRT~~QIR 38 (741)
|+-|+-+|-..|-+||++||+|+-.| --|.||++.-..
T Consensus 277 l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElV 316 (445)
T KOG4329|consen 277 LSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELV 316 (445)
T ss_pred cccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHH
Confidence 57899999999999999999999999 669999988765
No 15
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.27 Score=51.67 Aligned_cols=49 Identities=18% Similarity=0.051 Sum_probs=44.1
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee--EeecccchHHHHHHHH-----HHHHHHHHh
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA--EHIGTKKAVQIRSHAQ-----KFFSKLEKE 51 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI--e~VgTRT~~QIRSHAQ-----KYF~Kl~r~ 51 (741)
.|-..+|..|+.++..||+ +|..| ..+.+|+..|+-+||| +||.+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~ 222 (335)
T KOG0724|consen 166 PVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSG 222 (335)
T ss_pred hhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhh
Confidence 5778899999999999999 89999 8899999999999999 888887433
No 16
>smart00426 TEA TEA domain.
Probab=87.19 E-value=0.5 Score=41.46 Aligned_cols=40 Identities=20% Similarity=-0.019 Sum_probs=31.8
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee--E--------------ee-----cccchHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA--E--------------HI-----GTKKAVQIRSHAQ 42 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI--e--------------~V-----gTRT~~QIRSHAQ 42 (741)
+|+.+=...|++||++|-. .+++| . || ..||..||-||-|
T Consensus 5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence 6999999999999999987 45543 1 12 3699999999987
No 17
>PLN03212 Transcription repressor MYB5; Provisional
Probab=86.31 E-value=0.42 Score=50.36 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=37.1
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee-Eeec-ccchHHHHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIG-TKKAVQIRSHAQKFF 45 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~Vg-TRT~~QIRSHAQKYF 45 (741)
.|+.||=.+-+++++.||. +|+.| .++| .||..|.|-.=..|+
T Consensus 27 ~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 27 PWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence 5999999999999999996 89999 8886 899999997644443
No 18
>PLN03091 hypothetical protein; Provisional
Probab=85.19 E-value=0.44 Score=53.74 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=35.4
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee-Eeec-ccchHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIG-TKKAVQIRSHA 41 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~Vg-TRT~~QIRSHA 41 (741)
.|+.||-.+.+++++.||. +|++| .++| .||..|.|-.=
T Consensus 16 ~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW 57 (459)
T PLN03091 16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRW 57 (459)
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHH
Confidence 6999999999999999997 89999 8887 89999998653
No 19
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=82.87 E-value=1.8 Score=48.37 Aligned_cols=51 Identities=20% Similarity=0.009 Sum_probs=39.3
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee----Ee------------e-----cccchHHHHHHHHHHHHHHHHhhh
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA----EH------------I-----GTKKAVQIRSHAQKFFSKLEKEAL 53 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI----e~------------V-----gTRT~~QIRSHAQKYF~Kl~r~~~ 53 (741)
.||++=..-|+|||.+|.. .=+|| +. | .|||-.||-||-|=.=+|..|+-.
T Consensus 78 vWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq 150 (455)
T KOG3841|consen 78 VWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQ 150 (455)
T ss_pred ccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999855 33343 22 1 399999999999987777666543
No 20
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=74.73 E-value=2.5 Score=49.54 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=42.7
Q ss_pred chhhhHHHHHHHHHHhcCcCCcee-----------EeecccchHHHHHHHHHHHHHHHHhh
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-----------EHIGTKKAVQIRSHAQKFFSKLEKEA 52 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-----------e~VgTRT~~QIRSHAQKYF~Kl~r~~ 52 (741)
-|+-.|.--|..||++||+|+.+| .-|-.||--|||-|+.+...||.+.-
T Consensus 90 aWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~ 150 (782)
T KOG4468|consen 90 AWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLL 150 (782)
T ss_pred ccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhh
Confidence 488999999999999999999877 23667888999999888888887765
No 21
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=71.10 E-value=2.5 Score=52.06 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=42.5
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee-EeecccchHHHHHHHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSKL 48 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~Kl 48 (741)
-|+--+-..|+.|..+||| +..+| ..|+.||+..|+-.|+-|+.+.
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 4999999999999999999 89999 8999999999999999888664
No 22
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=70.97 E-value=3 Score=47.87 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=47.0
Q ss_pred CcchhhhHHHHHHHHHHhcCcCCcee--EeecccchHHHHHHHHHHHHH------HHHhhhcCCCCCCccccCCCCC
Q 004618 1 MLLFSIFDLIGDLSRLFFLCFTWFRA--EHIGTKKAVQIRSHAQKFFSK------LEKEALSKGVPIGQAIDIDIPP 69 (741)
Q Consensus 1 ~~l~s~~eh~~FLeaL~lyGRdWkkI--e~VgTRT~~QIRSHAQKYF~K------l~r~~~~~G~~~~~~~~i~iPP 69 (741)
|--||--|-..|-|||++||+|+..| .|+.=|+.+-| .+=||.- +++............+.|-||+
T Consensus 285 mEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sI---veyYYmwKttdRYvqqKrlKaaeadsKlkqvYIP~ 358 (693)
T KOG3554|consen 285 MEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSI---VEYYYMWKTTDRYVQQKRLKAAEADSKLKQVYIPT 358 (693)
T ss_pred hhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHH---HHHHHHHhhhhHHHHHHhhhhhhhhhhhheeeccC
Confidence 34599999999999999999999999 99998886555 4555531 2222233334455566778876
No 23
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=57.85 E-value=8.3 Score=43.54 Aligned_cols=42 Identities=17% Similarity=-0.013 Sum_probs=27.5
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee--------------Eee-----cccchHHHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA--------------EHI-----GTKKAVQIRSHAQKF 44 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI--------------e~V-----gTRT~~QIRSHAQKY 44 (741)
.|+.+=+..|+|||.+|-. .++|| .|| .+||..||-||.|=.
T Consensus 51 vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 51 VWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 6999999999999999965 45544 333 368999999999987
No 24
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=51.31 E-value=14 Score=44.23 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHhcCc-CCcee-EeecccchHHHHHHHHHHHHHHHH
Q 004618 4 FSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSKLEK 50 (741)
Q Consensus 4 ~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r 50 (741)
|+.-|..+.|++++.||. .|-+| .++|-||-.|.++--..+...-.|
T Consensus 415 W~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~r 463 (939)
T KOG0049|consen 415 WTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLR 463 (939)
T ss_pred eeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence 888899999999999999 79999 999999999998866555443333
No 25
>COG4425 Predicted membrane protein [Function unknown]
Probab=50.39 E-value=16 Score=42.41 Aligned_cols=50 Identities=30% Similarity=0.312 Sum_probs=37.3
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHc
Q 004618 367 AAHAAASFAATFWPYTNMETSADSPTCPQGGFLSRQMSSPPSMAAIAAATVAAATAWWAAH 427 (741)
Q Consensus 367 AaHAAAsfAASfWP~an~e~s~~s~~~~~g~~~~rq~~SpPSmAAIaAATVAAAtAWWAah 427 (741)
+-|+|+.|+-.-|+|-+.-.|..-+ .|-+ =-.+|||+|.+|..++|||+|
T Consensus 87 ~Gy~~gv~~~wl~~y~elp~~s~~~--------~R~~---~~~~ai~~~~~a~~fl~qa~~ 136 (588)
T COG4425 87 AGYGAGVFLHWLWRYLELPESSPRP--------PRWA---KPAAAIVGAAGAVGFLVQAAV 136 (588)
T ss_pred hhhHHHHHHHHHHHHhhCCCCCCCC--------cchh---hhHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999998764332221 2222 236899999999999999997
No 26
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=48.76 E-value=17 Score=43.57 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=42.8
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee-EeecccchHHHHHHHHHHHHHHHHhhhc
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIGTKKAVQIRSHAQKFFSKLEKEALS 54 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~~~ 54 (741)
-|.-+|-++.+.|+..||- +|-+| +.|.-|+-.|.|. .|...|.+.+..
T Consensus 362 ~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~---RY~nvL~~s~K~ 412 (939)
T KOG0049|consen 362 RWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRE---RYTNVLNRSAKV 412 (939)
T ss_pred CCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHH---HHHHHHHHhhcc
Confidence 3888999999999999986 99999 9999999999997 588887777643
No 27
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=46.96 E-value=11 Score=38.75 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=35.6
Q ss_pred chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSH 40 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSH 40 (741)
-|+.||...-+++=.+||-.|..| .+++-||-.-|.-|
T Consensus 64 ~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~ 102 (238)
T KOG0048|consen 64 NFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNH 102 (238)
T ss_pred CCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHH
Confidence 489999999999999999999999 99999999999655
No 28
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=39.29 E-value=14 Score=41.80 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=35.9
Q ss_pred cchhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHH
Q 004618 2 LLFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRS 39 (741)
Q Consensus 2 ~l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRS 39 (741)
+-|+..|-.+|..||..+|-|+.-| ....+|.-.||..
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKa 404 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKA 404 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHH
Confidence 4699999999999999999999999 9999999999974
No 29
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=37.85 E-value=27 Score=35.18 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004618 412 IAAATVAAATAWWAAHGLLPLCAPFHA 438 (741)
Q Consensus 412 IaAATVAAAtAWWAahGLLPlcaP~~~ 438 (741)
|++|=+|+..|==-+.-|+|||-|++.
T Consensus 55 l~tAriAgimaaKkT~elIPlCHpi~l 81 (157)
T COG0315 55 LATARIAGIMAAKRTSELIPLCHPLPL 81 (157)
T ss_pred HHHHHHHHHHHhhhhhhhCccCCCCcc
Confidence 556666666666677899999999753
No 30
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=31.54 E-value=35 Score=39.52 Aligned_cols=36 Identities=6% Similarity=0.086 Sum_probs=33.2
Q ss_pred chhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIR 38 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIR 38 (741)
-|..||-.+|-.|++.||+++.+| +.+.-|+..-|+
T Consensus 189 ~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlv 225 (534)
T KOG1194|consen 189 EWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLV 225 (534)
T ss_pred cchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHH
Confidence 499999999999999999999999 999999977665
No 31
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=29.65 E-value=54 Score=32.48 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCC
Q 004618 412 IAAATVAAATAWWAAHGLLPLCAPFH 437 (741)
Q Consensus 412 IaAATVAAAtAWWAahGLLPlcaP~~ 437 (741)
++.|-+|+..|==-+.-|+|||-|++
T Consensus 41 l~vAriAgI~aaK~T~~LIPlCHpi~ 66 (140)
T cd01420 41 LAVARIAGIMAAKRTSELIPLCHPLP 66 (140)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCc
Confidence 44455555555566779999999964
No 32
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=29.59 E-value=24 Score=42.82 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=37.4
Q ss_pred cchhhhHHHHHHHHHHhcCcCCcee-EeecccchHHHHHHHHHHHH
Q 004618 2 LLFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFS 46 (741)
Q Consensus 2 ~l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~ 46 (741)
.+|.-.|-..|-.||-.|-+|+-.| ..|.|||+.|-. |=||.
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCV---eyYYt 662 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCV---EYYYT 662 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHH---HHHHH
Confidence 4899999999999999999999999 999999999964 55553
No 33
>PRK12343 putative molybdenum cofactor biosynthesis protein MoaC; Reviewed
Probab=29.55 E-value=50 Score=33.13 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004618 413 AAATVAAATAWWAAHGLLPLCAPFHA 438 (741)
Q Consensus 413 aAATVAAAtAWWAahGLLPlcaP~~~ 438 (741)
++|-+|+-.|==-+.-|||||-|++.
T Consensus 50 ~~AriAgi~aAK~T~~LIPlCHPl~l 75 (151)
T PRK12343 50 ATARVAGILAVKKTPELIPMCHPIPI 75 (151)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCccc
Confidence 33444444444456689999999644
No 34
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=29.18 E-value=40 Score=34.66 Aligned_cols=37 Identities=5% Similarity=-0.070 Sum_probs=33.8
Q ss_pred chhhhHHHHHHHHHHhcCc-CCcee-Eeec-ccchHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFLCF-TWFRA-EHIG-TKKAVQIRS 39 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGR-dWkkI-e~Vg-TRT~~QIRS 39 (741)
.|+.||=.+..+=++.||. .|..| ...| -|+-.|.|-
T Consensus 11 pWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRl 50 (238)
T KOG0048|consen 11 PWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRL 50 (238)
T ss_pred CCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHH
Confidence 5999999999999999998 79999 9999 888888763
No 35
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=27.22 E-value=60 Score=32.06 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004618 412 IAAATVAAATAWWAAHGLLPLCAPFHA 438 (741)
Q Consensus 412 IaAATVAAAtAWWAahGLLPlcaP~~~ 438 (741)
++.|-+|+-.|==-+.-|+|||-|++.
T Consensus 41 l~~AriAgI~aaK~T~~LIPlCHpl~l 67 (136)
T cd00528 41 LAVARIAGIMAAKRTSELIPLCHPLPL 67 (136)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCcc
Confidence 445555555555667899999999643
No 36
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=26.99 E-value=57 Score=32.56 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004618 413 AAATVAAATAWWAAHGLLPLCAPFHA 438 (741)
Q Consensus 413 aAATVAAAtAWWAahGLLPlcaP~~~ 438 (741)
+.|-||+-.|==-+.-|+|||-|++.
T Consensus 53 ~~AriAgi~aaK~T~~lIPlCHpi~l 78 (147)
T TIGR00581 53 ATARIAGIMAAKRTGDLIPLCHPLPL 78 (147)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCccc
Confidence 33444444444456689999999643
No 37
>cd01419 MoaC_A MoaC family, archaeal. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=23.56 E-value=77 Score=31.55 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCC
Q 004618 412 IAAATVAAATAWWAAHGLLPLCAPFH 437 (741)
Q Consensus 412 IaAATVAAAtAWWAahGLLPlcaP~~ 437 (741)
++.|-+|+-.|==-+.-|+|||-|++
T Consensus 41 L~vAriAgI~aaK~T~~LIPlCHpl~ 66 (141)
T cd01419 41 IATARIAGILAVKKTPELIPMCHPIP 66 (141)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCcc
Confidence 34444555555556678999999964
No 38
>PF13825 Paramyxo_PNT: Paramyxovirus structural protein V/P N-terminus
Probab=23.22 E-value=2.5e+02 Score=31.31 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhcCCCCCCccccCCCC-CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCccccccc
Q 004618 43 KFFSKLEKEALSKGVPIGQAIDIDIP-PPRPKRKPRNPYPRKTCTNAPMSQIGAKDGKLRSSVSSL 107 (741)
Q Consensus 43 KYF~Kl~r~~~~~G~~~~~~~~i~iP-PpRpKRkp~hpYPrK~~~~~~~~~~~~~d~~~~~sv~s~ 107 (741)
.=|.+|.|.....|......+-+.+| +|++|+--.+.-|-|.+.+.-..+.+..+..+.++.+.-
T Consensus 185 eei~~ll~~q~~~~~~~~~gKtL~vP~~P~~~~~~~~~~pIKKGTd~ksas~Gt~~~~~s~sGATq 250 (309)
T PF13825_consen 185 EEIQALLRSQSNKGGRKKDGKTLVVPPIPDPKQSQPSEQPIKKGTDEKSASSGTETESFSTSGATQ 250 (309)
T ss_pred hHHHHHHhcccccCCCCCCCceeeCCCCCCCCCCCcCCcccccCccccccccccccccccccCccc
Confidence 34667777777777766667788888 799999999999999888776666666666655555533
No 39
>PRK09364 moaC molybdenum cofactor biosynthesis protein MoaC; Provisional
Probab=22.13 E-value=83 Score=31.82 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCC
Q 004618 414 AATVAAATAWWAAHGLLPLCAPFHA 438 (741)
Q Consensus 414 AATVAAAtAWWAahGLLPlcaP~~~ 438 (741)
.|-+|+..|==-+.-|||||-|++.
T Consensus 57 ~AriAgi~aaK~T~~LIPlCHpi~i 81 (159)
T PRK09364 57 TARIAGIMAAKRTSDLIPLCHPLML 81 (159)
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcc
Confidence 3334444444456689999999643
No 40
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=21.19 E-value=76 Score=29.09 Aligned_cols=48 Identities=21% Similarity=0.124 Sum_probs=34.3
Q ss_pred chhhhHHHHHHHHHHhc----Cc----CCcee-Eeeccc-----chHHH----HHHHHHHHHHHHH
Q 004618 3 LFSIFDLIGDLSRLFFL----CF----TWFRA-EHIGTK-----KAVQI----RSHAQKFFSKLEK 50 (741)
Q Consensus 3 l~s~~eh~~FLeaL~ly----GR----dWkkI-e~VgTR-----T~~QI----RSHAQKYF~Kl~r 50 (741)
|||-++.+.+|+||--| |+ ||-.+ ++|.-. |..|| |.==+||+..+.+
T Consensus 6 ~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 6 LWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 79999999999999988 74 56666 655433 55664 4445666666666
No 41
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=21.09 E-value=36 Score=36.11 Aligned_cols=25 Identities=44% Similarity=0.838 Sum_probs=17.9
Q ss_pred Cccccc-ccCCcccc----------ccchhhhhccc
Q 004618 695 GKLKAR-RTGFKPYK----------RCSVEAKENRI 719 (741)
Q Consensus 695 gkLK~R-rTGFKPYK----------RCSvEAKE~rv 719 (741)
+|--.| -||-.||| |||+|+-=..|
T Consensus 161 lkrh~rthtgvrpykc~~c~kaftqrcsleshl~kv 196 (267)
T KOG3576|consen 161 LKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKV 196 (267)
T ss_pred hhhhhccccCccccchhhhhHHHHhhccHHHHHHHH
Confidence 344455 79999998 99999754443
Done!