Query 004618
Match_columns 741
No_of_seqs 169 out of 286
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 18:36:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004618.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1915-1918//hhsearch_pdb/004618hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xag_B REST corepressor 1; ami 1.0 1 1 95.0 -0.0 18 595-614 378-395 (482)
2 2iw5_B Protein corest, REST co 1.0 1 1 85.5 -0.0 51 3-53 135-186 (235)
3 2yum_A ZZZ3 protein, zinc fing 1.0 1 1 79.4 0.5 50 3-52 10-66 (75)
4 2cu7_A KIAA1915 protein; nucle 1.0 1 1 75.5 2.5 49 3-51 11-60 (72)
5 2yus_A SWI/SNF-related matrix- 1.0 1 1 74.7 -0.4 44 3-46 20-64 (79)
6 1irz_A ARR10-B; helix-turn-hel 1.0 1 1 70.9 2.3 50 2-51 8-63 (64)
7 2ltp_A Nuclear receptor corepr 1.0 1 1 63.1 0.0 51 3-53 18-69 (89)
8 2elk_A SPCC24B10.08C protein; 1.0 1 1 62.1 1.3 44 3-46 11-57 (58)
9 1x41_A Transcriptional adaptor 1.0 1 1 60.8 1.3 44 3-46 10-55 (60)
10 2eqr_A N-COR1, N-COR, nuclear 1.0 1 1 59.6 1.9 44 1-47 12-56 (61)
No 1
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=1.00 E-value=1 Score=95.00 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 98873334315567999996
Q 004618 595 NITDSWKEVSEVGRLAFQAL 614 (741)
Q Consensus 595 ~~~DsWKEVSeEGRlAFqAL 614 (741)
.++..|-+ ||-.++-++|
T Consensus 378 ~~~~~WT~--eE~~~f~~al 395 (482)
T 2xag_B 378 KCNARWTT--EEQLLAVQAI 395 (482)
T ss_dssp CCCSCCCH--HHHHHHHHHH
T ss_pred CCCCCCCH--HHHHHHHHHH
T ss_conf 56899998--9999999999
No 2
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=1.00 E-value=1 Score=85.51 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 300667999999987429687605-840135467999779999999999552
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEKEAL 53 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~~ 53 (741)
-|+-+|+..|++||..|||+|..| .+|+|||+.||+.|.++|+.|+..+..
T Consensus 135 ~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~i 186 (235)
T 2iw5_B 135 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 186 (235)
T ss_dssp SCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9898999999999999886899999775999999999999999998668999
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=79.36 Aligned_cols=50 Identities=26% Similarity=0.390 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHHCC------CCCCEE-EEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 300667999999987429------687605-84013546799977999999999955
Q 004618 3 LFSIFDLIGDLSRLFFLC------FTWFRA-EHIGTKKAVQIRSHAQKFFSKLEKEA 52 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyG------RdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~ 52 (741)
-|+.+|+.+|++++..|| ++|.+| ++|++||..|+|.|.|+||.++.+.+
T Consensus 10 ~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 979999999999999808788874429999988489999999999999999999669
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=75.46 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 300667999999987429687605-8401354679997799999999995
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEKE 51 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~ 51 (741)
-|+.+|+..|+++++.||++|..| .+|++||..||+.|.++||.+..+.
T Consensus 11 ~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 97999999999999998829999998859999999999999999889865
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=74.74 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHHHH
Q ss_conf 300667999999987429687605-84013546799977999999
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFS 46 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~ 46 (741)
-|+.+|+.+||+|++.||++|.+| ++|++||..|+|.|.++|++
T Consensus 20 ~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 20 EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 969999999999999949789999988389999999999998422
No 6
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=1.00 E-value=1 Score=70.91 Aligned_cols=50 Identities=20% Similarity=0.083 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCC---CCEE-EEEC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 630066799999998742968---7605-8401--354679997799999999995
Q 004618 2 LLFSIFDLIGDLSRLFFLCFT---WFRA-EHIG--TKKAVQIRSHAQKFFSKLEKE 51 (741)
Q Consensus 2 ~l~s~~eh~~FLeaL~lyGRd---WkkI-e~Vg--TRT~~QIRSHAQKYF~Kl~r~ 51 (741)
+.|+.+.|.+|++|++.+|.+ ||+| ++++ ..|..||.||.|||++++.|.
T Consensus 8 ~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 8 VLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 81799999999999999578877759999984899888999999999999998733
No 7
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=63.07 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 300667999999987429687605-840135467999779999999999552
Q 004618 3 LFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSKLEKEAL 53 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~Kl~r~~~ 53 (741)
-|+.+|...|++++..||.+|..| .+|++||..||+.|-+.|..++.....
T Consensus 18 ~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~~~ 69 (89)
T 2ltp_A 18 GWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEI 69 (89)
No 8
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=62.06 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHCC-CCCCEE-EEEC-CCCHHHHHHHHHHHHH
Q ss_conf 300667999999987429-687605-8401-3546799977999999
Q 004618 3 LFSIFDLIGDLSRLFFLC-FTWFRA-EHIG-TKKAVQIRSHAQKFFS 46 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyG-RdWkkI-e~Vg-TRT~~QIRSHAQKYF~ 46 (741)
-|+.+|..++|++++.|| .+|..| .+|+ +||..|+|.|-++||+
T Consensus 11 ~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 97999999999999998869799999987779999999999998834
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=1.00 E-value=1 Score=60.81 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHCC-CCCCEE-EEECCCCHHHHHHHHHHHHH
Q ss_conf 300667999999987429-687605-84013546799977999999
Q 004618 3 LFSIFDLIGDLSRLFFLC-FTWFRA-EHIGTKKAVQIRSHAQKFFS 46 (741)
Q Consensus 3 l~s~~eh~~FLeaL~lyG-RdWkkI-e~VgTRT~~QIRSHAQKYF~ 46 (741)
-|+.+|..+++++++.|| .+|.+| .+|++||..|+|.|-++|+.
T Consensus 10 ~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 10 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 9899999999999999884849999988089999999999999856
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=59.57 Aligned_cols=44 Identities=5% Similarity=-0.108 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCHHHHHHHHHHHHHH
Q ss_conf 96300667999999987429687605-840135467999779999999
Q 004618 1 MLLFSIFDLIGDLSRLFFLCFTWFRA-EHIGTKKAVQIRSHAQKFFSK 47 (741)
Q Consensus 1 ~~l~s~~eh~~FLeaL~lyGRdWkkI-e~VgTRT~~QIRSHAQKYF~K 47 (741)
+-.|+.+||..|++||.+||++|.+| .+|++||+.||+-| |+.-
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~---Yy~~ 56 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLY---YYLT 56 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHH---HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHH---HHHH
T ss_conf 89989999999999999968779999978499989999999---9885
Done!