Query 004619
Match_columns 741
No_of_seqs 161 out of 209
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:20:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2604 Subunit of cis-Golgi t 100.0 2E-143 4E-148 1191.2 60.7 707 12-741 3-721 (733)
2 PF04136 Sec34: Sec34-like fam 100.0 8.7E-43 1.9E-47 339.3 19.0 155 112-266 1-155 (157)
3 PF06419 COG6: Conserved oligo 98.9 0.00048 1E-08 81.7 51.7 408 107-580 27-479 (618)
4 KOG3758 Uncharacterized conser 97.6 0.29 6.2E-06 56.8 36.8 397 112-584 65-515 (655)
5 PF09763 Sec3_C: Exocyst compl 97.5 0.52 1.1E-05 57.1 47.1 85 631-727 574-659 (701)
6 PF04129 Vps52: Vps52 / Sac2 f 96.8 1.6 3.6E-05 50.9 42.6 340 116-469 15-397 (508)
7 KOG2604 Subunit of cis-Golgi t 96.6 0.0059 1.3E-07 70.9 8.6 150 115-265 543-697 (733)
8 KOG1961 Vacuolar sorting prote 91.0 38 0.00083 39.9 32.4 137 115-260 75-218 (683)
9 PF06008 Laminin_I: Laminin Do 82.5 72 0.0016 33.9 20.7 108 115-229 35-145 (264)
10 COG3883 Uncharacterized protei 81.4 44 0.00096 35.8 14.6 102 106-217 33-138 (265)
11 KOG0810 SNARE protein Syntaxin 79.8 1E+02 0.0022 33.8 17.2 180 126-327 41-224 (297)
12 PF13949 ALIX_LYPXL_bnd: ALIX 73.8 32 0.00068 36.9 11.4 104 91-198 176-283 (296)
13 cd08915 V_Alix_like Protein-in 70.8 49 0.0011 36.6 12.2 103 91-197 226-332 (342)
14 PF04899 MbeD_MobD: MbeD/MobD 65.5 79 0.0017 27.1 9.5 67 99-165 2-68 (70)
15 PF04012 PspA_IM30: PspA/IM30 64.0 1.1E+02 0.0024 31.5 12.5 114 91-218 64-177 (221)
16 cd09234 V_HD-PTP_like Protein- 58.4 1E+02 0.0022 34.2 11.7 93 103-198 236-328 (337)
17 KOG1490 GTP-binding protein CR 56.0 49 0.0011 38.5 8.7 107 113-220 79-196 (620)
18 cd09237 V_ScBro1_like Protein- 55.9 79 0.0017 35.2 10.4 97 102-198 248-347 (356)
19 PF04108 APG17: Autophagy prot 52.7 4E+02 0.0087 30.4 22.6 93 161-253 193-303 (412)
20 PF04048 Sec8_exocyst: Sec8 ex 51.6 2.3E+02 0.005 27.3 12.7 66 91-163 42-107 (142)
21 PF00435 Spectrin: Spectrin re 50.6 1.6E+02 0.0034 25.1 11.1 59 90-151 9-67 (105)
22 cd09238 V_Alix_like_1 Protein- 50.6 1.1E+02 0.0023 34.0 10.3 88 106-197 242-329 (339)
23 PF10168 Nup88: Nuclear pore c 50.1 3.6E+02 0.0079 33.2 15.4 83 126-219 566-648 (717)
24 PF06248 Zw10: Centromere/kine 49.2 5.3E+02 0.012 30.8 18.5 139 91-234 9-152 (593)
25 PF11554 DUF3232: Protein of u 49.1 86 0.0019 30.5 7.8 86 218-322 8-99 (152)
26 PF08580 KAR9: Yeast cortical 48.9 5.9E+02 0.013 31.2 19.1 102 86-222 33-146 (683)
27 PF01031 Dynamin_M: Dynamin ce 47.0 4E+02 0.0086 28.7 17.2 59 211-270 33-91 (295)
28 KOG0804 Cytoplasmic Zn-finger 45.6 2.1E+02 0.0045 32.9 11.3 73 111-183 339-412 (493)
29 PRK09039 hypothetical protein; 45.5 4.3E+02 0.0094 29.4 14.0 133 107-246 45-185 (343)
30 cd09236 V_AnPalA_UmRIM20_like 45.4 1.8E+02 0.0039 32.5 11.1 91 103-197 253-343 (353)
31 PF06103 DUF948: Bacterial pro 44.9 1.9E+02 0.0042 25.3 9.2 33 152-184 53-85 (90)
32 KOG2196 Nuclear porin [Nuclear 43.7 3E+02 0.0066 29.2 11.4 77 95-183 81-157 (254)
33 PF10191 COG7: Golgi complex c 42.9 7.5E+02 0.016 30.7 36.3 170 207-423 148-324 (766)
34 PF04108 APG17: Autophagy prot 39.8 6.2E+02 0.014 28.9 20.9 104 93-196 214-323 (412)
35 PF07303 Occludin_ELL: Occludi 37.2 2.4E+02 0.0051 25.9 8.6 62 110-172 7-68 (101)
36 smart00150 SPEC Spectrin repea 37.1 2.6E+02 0.0056 23.7 10.6 91 90-183 6-100 (101)
37 smart00503 SynN Syntaxin N-ter 36.9 2.2E+02 0.0048 25.6 8.7 58 126-183 9-66 (117)
38 PHA03386 P10 fibrous body prot 36.0 1.7E+02 0.0037 26.4 7.1 54 127-184 7-60 (94)
39 PF06148 COG2: COG (conserved 34.5 57 0.0012 30.9 4.4 105 85-193 25-130 (133)
40 PF14932 HAUS-augmin3: HAUS au 33.4 3.3E+02 0.0072 29.0 10.4 155 89-248 6-187 (256)
41 KOG1962 B-cell receptor-associ 32.9 1.7E+02 0.0036 30.6 7.6 58 120-177 153-210 (216)
42 cd09235 V_Alix Middle V-domain 32.3 3.8E+02 0.0083 29.7 11.0 83 112-198 248-330 (339)
43 PF11172 DUF2959: Protein of u 32.2 5.9E+02 0.013 26.3 11.8 39 207-260 141-179 (201)
44 COG1084 Predicted GTPase [Gene 32.2 3.3E+02 0.0071 30.4 10.1 102 112-214 78-190 (346)
45 PF00015 MCPsignal: Methyl-acc 31.1 3.1E+02 0.0068 27.2 9.4 14 91-104 95-108 (213)
46 cd00179 SynN Syntaxin N-termin 30.0 4.8E+02 0.01 24.7 13.0 46 169-214 87-141 (151)
47 PRK15352 type III secretion sy 29.5 3.2E+02 0.007 24.6 7.8 50 126-175 68-117 (125)
48 PF08385 DHC_N1: Dynein heavy 29.4 9.7E+02 0.021 28.0 30.9 55 170-228 86-140 (579)
49 PF14932 HAUS-augmin3: HAUS au 29.3 5.9E+02 0.013 27.0 11.4 53 171-225 136-188 (256)
50 PF05600 DUF773: Protein of un 28.8 5.1E+02 0.011 30.5 11.7 78 89-166 397-494 (507)
51 cd07624 BAR_SNX7_30 The Bin/Am 28.6 5.8E+02 0.013 25.9 10.9 20 113-132 19-38 (200)
52 PF05700 BCAS2: Breast carcino 28.1 6.9E+02 0.015 25.9 11.7 73 111-183 132-219 (221)
53 PF01865 PhoU_div: Protein of 27.8 6.5E+02 0.014 25.4 12.2 55 161-224 41-96 (214)
54 PLN03094 Substrate binding sub 26.9 9.6E+02 0.021 27.1 13.8 125 92-219 230-366 (370)
55 cd07666 BAR_SNX7 The Bin/Amphi 26.6 7.5E+02 0.016 26.3 11.4 82 113-194 59-156 (243)
56 PF06005 DUF904: Protein of un 26.3 4.2E+02 0.0091 22.8 9.0 58 125-182 4-61 (72)
57 cd08816 CARD_RIG-I_1 Caspase a 26.1 1.4E+02 0.0031 26.6 4.9 66 387-459 5-70 (89)
58 PF06120 Phage_HK97_TLTM: Tail 25.2 9.4E+02 0.02 26.4 12.4 40 84-125 26-65 (301)
59 PF10372 YojJ: Bacterial membr 24.9 2.4E+02 0.0051 24.3 5.9 50 113-162 15-65 (70)
60 PF04136 Sec34: Sec34-like fam 24.0 7E+02 0.015 24.5 10.4 44 123-166 5-48 (157)
61 PF13874 Nup54: Nucleoporin co 23.7 5.4E+02 0.012 24.7 9.1 51 150-200 76-127 (141)
62 PF12128 DUF3584: Protein of u 23.7 1.5E+03 0.031 29.8 15.6 112 113-229 846-980 (1201)
63 PF15290 Syntaphilin: Golgi-lo 23.6 7.3E+02 0.016 27.0 10.5 84 114-197 71-162 (305)
64 PF00957 Synaptobrevin: Synapt 23.4 5E+02 0.011 22.6 8.7 51 116-166 8-58 (89)
65 KOG1949 Uncharacterized conser 23.1 8.8E+02 0.019 29.9 11.9 88 315-418 147-248 (1005)
66 PRK04778 septation ring format 22.4 4.6E+02 0.01 31.2 10.0 95 114-231 444-538 (569)
67 PF09325 Vps5: Vps5 C terminal 22.3 8.4E+02 0.018 24.8 12.0 93 88-180 91-183 (236)
68 TIGR02680 conserved hypothetic 21.4 1.9E+03 0.042 29.2 16.1 64 88-151 246-309 (1353)
69 KOG1333 Uncharacterized conser 21.3 4.1E+02 0.0088 27.6 7.7 35 504-538 149-184 (241)
70 KOG3976 Mitochondrial F1F0-ATP 21.2 1E+03 0.022 25.4 11.0 47 148-198 165-211 (247)
71 PF10146 zf-C4H2: Zinc finger- 20.7 1E+03 0.022 25.1 11.3 36 131-166 59-94 (230)
72 PF00261 Tropomyosin: Tropomyo 20.7 9.7E+02 0.021 25.0 11.3 75 109-183 111-185 (237)
73 PRK10807 paraquat-inducible pr 20.6 7.4E+02 0.016 29.5 11.1 21 207-227 508-528 (547)
74 PF06419 COG6: Conserved oligo 20.5 9.7E+02 0.021 28.9 12.3 96 84-194 26-136 (618)
75 TIGR01834 PHA_synth_III_E poly 20.2 6.4E+02 0.014 28.0 9.6 47 85-131 224-276 (320)
76 KOG0739 AAA+-type ATPase [Post 20.1 76 0.0016 34.9 2.5 69 355-427 176-258 (439)
No 1
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-143 Score=1191.15 Aligned_cols=707 Identities=41% Similarity=0.664 Sum_probs=641.9
Q ss_pred CCCcccccccchHhhhhhhCCCCHHHHHHHHHHHHhhccCCCCccccccCCCCCCCCCcccccCCCCCCCcchhhhhcCh
Q 004619 12 PKSGAVSRGYNFASTWEQNAPLSEQQQAAIGSLFHVVAERPFPVNLAQEHVPGQDNGLSVATKDHSFGESDAIEAVLVNT 91 (741)
Q Consensus 12 ~~~~~~~~~~~~~~~We~~apLs~~q~~~i~~l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (741)
+..+|.++.+.....|+..|||+|.|+..+..+.++..++|-|+.++.++.+.+... |-.+ +..++.++
T Consensus 3 ~~~~ar~~~~~~~~~~~~~a~l~e~q~~~~l~~~~~~~~~~~p~~l~~e~~~s~~~~------d~~l-----~~~~~~~~ 71 (733)
T KOG2604|consen 3 DQREARSRLNYWDRETDNDAPLPEQQTLENLELVHALSKEPRPSLLPIENSSSLTSQ------DISL-----GEENLTNT 71 (733)
T ss_pred chhHHHHHhhhhhcccccCCCCcHHHHHHHHHHHHHHHhCCCcccccccccccCCCC------CccC-----Ccccccch
Confidence 455677788888888888999999999999999999999999999888754221111 2222 24678899
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004619 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQR 171 (741)
Q Consensus 92 ~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~ 171 (741)
.+|+.||+++...|...++.+|+.|+++|+...++|+.+|+|++++++.|.+|..+|++|+.||++||++||+|+.||.+
T Consensus 72 ~~f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k 151 (733)
T KOG2604|consen 72 NQFLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK 151 (733)
T ss_pred hhhhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHH
Q 004619 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRS 251 (741)
Q Consensus 172 L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~ 251 (741)
|.++|+.|+.+|+||++||+++|+||+|+.+|++.+|.+||.+||+||.|+++||+|||++.|+.||||||+|||+|||+
T Consensus 152 l~elae~I~k~L~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y~~k~kqcL~kA~~lik~ 231 (733)
T KOG2604|consen 152 LSELAEGIRKKLHYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFLEENPDFKDAPAYLGKYKQCLSKALGLIKT 231 (733)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhh
Q 004619 252 HVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLS 331 (741)
Q Consensus 252 ~~~~~L~~~~~~v~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~ 331 (741)
|++|+|++++++|.++-++ .....+..++++|+||.++|+++|+++++||+|+.++||.++|.+||+.||++|.+
T Consensus 232 y~~~vlkq~t~q~l~~~~~-----~~~~~~~~~sl~Y~kf~aaa~~~k~~i~eie~rs~~~e~~qlL~~~~~~Y~~qRl~ 306 (733)
T KOG2604|consen 232 YFTNVLKQTTSQVLKRSKN-----MNPHADLAFSLFYVKFSAAAHKLKPVIEEIEKRSEKEEYDQILAECHQHYFQQRLR 306 (733)
T ss_pred HHHHHHHHHHHHHhccCCC-----CCCccchhhhhhhhHHHHHHhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998765221 12233677899999999999999999999999998899999999999999999999
Q ss_pred hhhHHHHHHHHHHhccCCchhhHHhHHHHHHHHHHHHHHhhccccCCCccChhchhhhHHHHHHHHHHhhcccccccCCH
Q 004619 332 LVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLIDPLSTFLYDILRPKLIHETNV 411 (741)
Q Consensus 332 LL~p~i~~~l~~~~~~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~~~~~l~~~le~Lc~~LYd~lRp~Ii~~~~L 411 (741)
|++|+|+.+|.+++..+++|+++|+||+||+++|.||++||.+||+.+ ...+..|+++||.++||..||+|+|+.|+
T Consensus 307 ll~pvi~~~i~~~~~~~~~~s~~rsg~afl~~~c~dE~kLf~Eff~~~---~f~~~~~~~~lc~~lyd~~r~~ilh~~~l 383 (733)
T KOG2604|consen 307 LLKPVIDYHIKEFFVKKDLCSLIRSGCAYLQQTCADENKLFREFFIMG---DFKLMHYLENLCQSLYDNSRPLILHEKHL 383 (733)
T ss_pred ccCcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHHHHHHhhcCCC---chHHHHHHHHhchHhhcchhhHHHHHHHH
Confidence 999999999999998889999999999999999999999999999887 36799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccCCCchhhhhccCCCC
Q 004619 412 DLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANYIPSDEDLNYPSKLEQSAGTKL 491 (741)
Q Consensus 412 ~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLiFRaq~yi~~~I~~Y~P~~~DL~yP~kL~~~~~~~~ 491 (741)
++||+.|++++.++++++.+ ....+++..++||++|+||||+||+|+||+++|.+|+|++|||+||+|+++......
T Consensus 384 ~tL~e~~si~~~~~le~~~~---~~~~~~~~~~~~il~dvqeRL~fr~~~yiq~dI~~y~Pt~~dL~~~~k~~~~~~~~~ 460 (733)
T KOG2604|consen 384 ETLCEVCSILQSEQLEEHVQ---ERLDAFAEFLNPILQDVQERLVFRVQTYIQTDIQNYSPTEEDLAYPAKLEMSEFILQ 460 (733)
T ss_pred HHHHHHHHhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcCCCChhhccchHHHHhhHHHHh
Confidence 99999999999999988765 333378999999999999999999999999999999999999999999998532111
Q ss_pred C---CCCC------CCCccccccCCchHHHHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 004619 492 E---TTPA------DENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFTGLAQEAVEVCSESIQKASKLIAKRSTPMDGQL 562 (741)
Q Consensus 492 ~---~~~~------~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~~LA~eaV~~Ci~SL~~A~~~I~~~~~~~Dg~L 562 (741)
+ .++. ......-.+| |||+|||.||||||||||+.||+|+||+++|.||+||.+|++.|+++++++||+|
T Consensus 461 ~l~~~D~e~~~~~~~~~~~~~~s~-p~v~kTL~~LSklYrcids~vf~~lA~~~~~~CI~Sl~~A~~~i~knk~~lDa~L 539 (733)
T KOG2604|consen 461 SLRLSDEEKLDSDVPQKSAMTESW-PPVRKTLVCLSKLYRCIDSPVFDGLAQEALEDCIQSLSGAYKDISKNKTKLDAEL 539 (733)
T ss_pred hccCCchhhhcchhhhhhccccCC-chHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHhHHHHhhhccccccchh
Confidence 0 0100 1122334567 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhccccccccccccccccchhhHHHHHHHHhccCccccccchhhhhh---hcccchhchhhhhHHHHHHH
Q 004619 563 FLIKYLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASLFDWSRSTSLAR---TLSPRVLESQIDAKKELEKS 639 (741)
Q Consensus 563 FlIKhLLiLReQi~~Fdi~f~~~e~~lDFs~~~~~~~~ll~~~~~lf~~ss~~~l~~---~~~P~v~e~~~Dsk~eld~~ 639 (741)
|+|||||||||||+||+|+|+++|+++|||++++++++++.+...+|+++++|++++ .++|+|+++++|+|+|||.+
T Consensus 540 fliKhLLiLReQiapFriq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~q 619 (733)
T KOG2604|consen 540 FLIKHLLILREQIAPFRIQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQ 619 (733)
T ss_pred hHHHHHHHHHHhccccceeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999888999999988766 55999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHHHHHHHHhhcHHH
Q 004619 640 LKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHKVNAAIQQELPPV 719 (741)
Q Consensus 640 Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~l~~~~~~~l~~q~fa~p~~i~~~~~~~~~~i~~~lp~~ 719 (741)
||.+|+.||+.++..+++|+.+|+.++.+...+...+.++-+........+.+++||.|..|..++.+++..+...++.+
T Consensus 620 Lr~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~~~ 699 (733)
T KOG2604|consen 620 LRSACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLYVI 699 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999998877654333322222233467899999999999999999999999999999
Q ss_pred HHHHHhhcCChhhhhhccccCC
Q 004619 720 MAKMKLYLQNPSTRTILFKPVK 741 (741)
Q Consensus 720 ~~~m~lYL~~~~t~~iL~~pik 741 (741)
+..|.+|+.|.++.++.++||+
T Consensus 700 ~~~~~~~~sn~~~~f~~f~~~~ 721 (733)
T KOG2604|consen 700 QASMELLLSNDDENFIYFQPVR 721 (733)
T ss_pred HHHHHHHhhcCcccchhhhHHH
Confidence 9999999999999999999974
No 2
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=100.00 E-value=8.7e-43 Score=339.26 Aligned_cols=155 Identities=43% Similarity=0.748 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004619 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (741)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (741)
+|+.|.++|..+.++|+.++++++++++.|++|..+|..|+++|++||++|++|+.||++|++++++|+++|+||++||+
T Consensus 1 ~y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 80 (157)
T PF04136_consen 1 KYRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDP 80 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004619 192 IAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQA 266 (741)
Q Consensus 192 itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~~~~~~L~~~~~~v~~ 266 (741)
|+|+||+|+.+|.+++|.+||.+||+||+||++||+|||+++|++||+|||+|||+|||+||++.||+++++|.+
T Consensus 81 itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk~y~~~~l~~~~~~vl~ 155 (157)
T PF04136_consen 81 ITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIKNYVVNTLRSATNQVLK 155 (157)
T ss_pred HHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=98.88 E-value=0.00048 Score=81.72 Aligned_cols=408 Identities=15% Similarity=0.202 Sum_probs=269.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 004619 107 SETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYF 186 (741)
Q Consensus 107 ~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 186 (741)
.+.-.....+++.+..-.++.+.+-.+++..-..-++|...-.....+|..+-+..+.|-.+++.++...+-+..-+..|
T Consensus 27 ~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f 106 (618)
T PF06419_consen 27 KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERF 106 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33334455666666666667777777777777777777777777788899999999999999999999999999999999
Q ss_pred hhHHHHHHhhCCCCCccCCccHHHHHHHHH----HHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004619 187 DELENIAASFYSPNMNVGNGNFFHLLKRLD----ECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASS 262 (741)
Q Consensus 187 ~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD----~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~~~~~~L~~~~~ 262 (741)
.==+.=..-|.+... .-++.|...|.+.. +|-.=| .-++.+=+-....+--+.+.+|..-|-.++...++....
T Consensus 107 ~Ls~~E~~~L~~~~~-~v~~~FF~~L~r~~~I~~~c~~LL-~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l~~ 184 (618)
T PF06419_consen 107 TLSEEEEDALTSGEE-PVDDEFFDALDRVQKIHEDCKILL-STENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSLNL 184 (618)
T ss_pred CCCHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 754444445655422 34788999888874 465445 444666666666777777777777777777666655411
Q ss_pred HHHHHHHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004619 263 QVQAAIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRIS 342 (741)
Q Consensus 263 ~v~~~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~ 342 (741)
+ .+.. .+.++.-+..+..| |+ +.+.|.+.|.+.|.+.|..-.-..++
T Consensus 185 ~-----------~~~~----------------~~~l~~al~~L~~r---p~---lf~~~l~~~~~~R~~~l~~~F~~aLt 231 (618)
T PF06419_consen 185 D-----------NPEV----------------SPLLRRALRYLRER---PV---LFNYCLDEFAEARSKALLRRFLDALT 231 (618)
T ss_pred c-----------Cccc----------------chHHHHHHHHHhcC---hH---HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 0101 22344444455443 43 46789999999999988775555553
Q ss_pred HHhc-----------cCCchhhHHhHHHHHHHHHHHHHHhhccccCCCccC-------------------hhchhhhHHH
Q 004619 343 EFSK-----------KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSED-------------------ISSLAPLIDP 392 (741)
Q Consensus 343 ~~~~-----------~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~~-------------------~~~l~~~le~ 392 (741)
.-.. .+|-..++-.-.+|+-|..-.|.++....|...+.. ..-++..+++
T Consensus 232 ~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~ 311 (618)
T PF06419_consen 232 RGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILEG 311 (618)
T ss_pred CCCCCCCCCCchhhhccChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 2221 147778999999999999999999999999754311 1224557788
Q ss_pred HHHHHHHhhcccccccCCHHHHHHHHHHHHHH--HhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-
Q 004619 393 LSTFLYDILRPKLIHETNVDLLCELVDILKVE--VLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIAN- 469 (741)
Q Consensus 393 Lc~~LYd~lRp~Ii~~~~L~~Lcel~~iL~~e--~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLiFRaq~yi~~~I~~- 469 (741)
+|.||=-.+-.-|-.+.+.-++-+++.+|+=| |+...++... .+-..+..+..-++.++.--.+.+++.=-..
T Consensus 312 l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~~~~k~i~~~s----~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~ 387 (618)
T PF06419_consen 312 LCRPLKIRVEQVISSEEDPITLYKIANLLSFYQMTFSKLIGEDS----SLIETLKELQDLAQKKFFSSLRDHVAKLLRSA 387 (618)
T ss_pred HhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88888877777777899999999999999974 5555443221 3555566677777766666666666433333
Q ss_pred cCCCcccCCCchhhhhccCCCCCCCCCCCCccccccCCchHHHHHHHHHhhhhhcchhhhh-------HHHHHHHHHHHH
Q 004619 470 YIPSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQCLEQAVFT-------GLAQEAVEVCSE 542 (741)
Q Consensus 470 Y~P~~~DL~yP~kL~~~~~~~~~~~~~~~~~~~~~~wYPpl~ktL~lLSkly~~v~~~VF~-------~LA~eaV~~Ci~ 542 (741)
-.|.+.||.-|+-+ ..++..|.-|...-+.++.. .--..+|..++.
T Consensus 388 ~~~~~~DL~PP~~l---------------------------~d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~id 440 (618)
T PF06419_consen 388 PEPPPADLSPPEWL---------------------------IDFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPID 440 (618)
T ss_pred CCCCCCCCCCCHHH---------------------------HHHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhH
Confidence 25556777766544 34444444444332222221 122334444455
Q ss_pred HHHHHHHHHHhcCCCCcc-hhHHHHhHHHHhhhcccccc
Q 004619 543 SIQKASKLIAKRSTPMDG-QLFLIKYLLILREQIAPFDI 580 (741)
Q Consensus 543 SL~~A~~~I~~~~~~~Dg-~LFlIKhLLiLReQi~~Fdi 580 (741)
-+.......+..-.+-|. ..|+|--|..++.-|.||+.
T Consensus 441 pll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~ 479 (618)
T PF06419_consen 441 PLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEF 479 (618)
T ss_pred HHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHh
Confidence 554444444444466666 89999999999999998853
No 4
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.29 Score=56.85 Aligned_cols=397 Identities=15% Similarity=0.200 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004619 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (741)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (741)
.-..|+..++.-....+.+-.+++..-...++|..++..+..+|+.+=..-+++=.|..+++.-.+-|...|.-|.--..
T Consensus 65 iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~ 144 (655)
T KOG3758|consen 65 INEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSE 144 (655)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChH
Confidence 34467778888888888888888888888889999999999999999999999999999999999999999998875544
Q ss_pred HHHhhCCCCCccCCccHHHHHHHHH---HHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 004619 192 IAASFYSPNMNVGNGNFFHLLKRLD---ECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLS-VLKSASSQVQAA 267 (741)
Q Consensus 192 itr~l~sp~~~V~~~~F~~~L~~LD---~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~~~~~-~L~~~~~~v~~~ 267 (741)
=.+-|.+.|- -++.|...|++.- +.-.+|-+-|++.-+.--..+-.-.+-+|..-|-.+..+ .+++.
T Consensus 145 E~~~L~~~g~--i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r~~qs~e~~~l------- 215 (655)
T KOG3758|consen 145 ELDLLTESGP--IDEDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERLFRWSQSSECRNL------- 215 (655)
T ss_pred HHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhcCC-------
Confidence 4445544332 2567888887652 223344444443333333333333333333322222211 11110
Q ss_pred HHhcCCCCCCCCcchhhhhhHHHHHHHHHhHHHHHHHHHhhh-ChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc
Q 004619 268 IRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRS-SKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSK 346 (741)
Q Consensus 268 l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~l~~Li~eie~R~-~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~~~~~ 346 (741)
.+++ ..+..+++...-.+. .+|. +.+.|.+.|.+.|.+-| ++.-|+.+..
T Consensus 216 ------------~~t~-----------~~E~~~il~kA~~~L~~~p~---lfk~~ide~~~aR~~~L---~~~Fisaltr 266 (655)
T KOG3758|consen 216 ------------TGTD-----------SQEVSPILRKAFVFLSSRPV---LFKYLIDEVGTARSQSL---LRQFISALTR 266 (655)
T ss_pred ------------cccc-----------chhhHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHH---HHHHHHHHcc
Confidence 0011 012333333322222 2233 45567788888887654 3344444432
Q ss_pred -------------cCCchhhHHhHHHHHHHHHHHHHHhhccccCCCc-------------------cChhchhhhHHHHH
Q 004619 347 -------------KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSS-------------------EDISSLAPLIDPLS 394 (741)
Q Consensus 347 -------------~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~-------------------~~~~~l~~~le~Lc 394 (741)
.+|-..++..-.+|+-|.-..|.+++...|.... .|..-++..++++|
T Consensus 267 g~~~~~PrpIel~ahDPlRyIGDmLawlHq~ia~Ekelv~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~lld~i~~gvc 346 (655)
T KOG3758|consen 267 GGPGGMPRPIELHAHDPLRYIGDMLAWLHQAIANEKELVEALFDFKKEDLQDNISISENLPNVLGGIDNKLLDDILEGVC 346 (655)
T ss_pred CCCCCCCCCccccCCChHHHHHHHHHHHHHHhhhHHHHHHHHhcchhhhhccCCCchhHhHHHHhchhhhHHHHHHHHhc
Confidence 1366789999999999999999999999992211 11122446677777
Q ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHH--HHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-C
Q 004619 395 TFLYDILRPKLIHETNVDLLCELVDILKV--EVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIANY-I 471 (741)
Q Consensus 395 ~~LYd~lRp~Ii~~~~L~~Lcel~~iL~~--e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLiFRaq~yi~~~I~~Y-~ 471 (741)
.||==.+-..+.-+.|.-.|-+++.+|+= ++++.-++... .+-..+..|-.-.+.|.+=--..++. .+.++ .
T Consensus 347 rPlkvRvEqil~~e~~~Iilfki~nlL~FY~~~fs~~v~~ds----~l~~~l~~L~d~s~q~~~~~l~~~~~-~l~~~~l 421 (655)
T KOG3758|consen 347 RPLKVRVEQILQAEKNAIILFKISNLLKFYRVTFSKLVQDDS----ALLNTLKELEDISKQRFIGYLEDHVK-KLMRKEL 421 (655)
T ss_pred chhHHHHHHHHHcCcCceeehhHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcC
Confidence 77766666666778999999999999996 45654443221 23333333333334444433334443 33444 2
Q ss_pred CCcccCCCchhhhhccCCCCCCCCCCCCccccccCCchHHHHHHHHHhhhh---hc----------chhhhhHHHHHHHH
Q 004619 472 PSDEDLNYPSKLEQSAGTKLETTPADENPDVYKTWYPPLEKTVSCLSKLYQ---CL----------EQAVFTGLAQEAVE 538 (741)
Q Consensus 472 P~~~DL~yP~kL~~~~~~~~~~~~~~~~~~~~~~wYPpl~ktL~lLSkly~---~v----------~~~VF~~LA~eaV~ 538 (741)
|.|.||-.|. .|+..|.+|--|+. .+ ...+|.-+-.-++.
T Consensus 422 ~p~~DLlPpp---------------------------~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vldpilq 474 (655)
T KOG3758|consen 422 SPPSDLLPPP---------------------------AVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVLDPILQ 474 (655)
T ss_pred CCccccCCCH---------------------------HHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHHHHHHH
Confidence 3333666443 35555555544443 11 13445555566677
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc-hhHHHHhHHHHhhhcccccccccc
Q 004619 539 VCSESIQKASKLIAKRSTPMDG-QLFLIKYLLILREQIAPFDIEFSV 584 (741)
Q Consensus 539 ~Ci~SL~~A~~~I~~~~~~~Dg-~LFlIKhLLiLReQi~~Fdi~f~~ 584 (741)
.|..+-.. . .+++--| ..|+|--|=..|.-+++|+.=+..
T Consensus 475 ~c~~sae~---~---lp~~d~~~~if~iNcL~~iks~l~~~e~~~~~ 515 (655)
T KOG3758|consen 475 MCQKSAEA---H---LPTSDKGSLIFMINCLDLIKSRLARYEFLDER 515 (655)
T ss_pred HHHHHHHh---c---CCCcccccceehhhhHHHHHhHHHHHHHHHHH
Confidence 77665411 0 1112222 489999999999999999864433
No 5
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=97.45 E-value=0.52 Score=57.14 Aligned_cols=85 Identities=11% Similarity=0.232 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCCCCcccchhcccccccccccChhHHHHHHHH-HH
Q 004619 631 DAKKELEKSLKATCEEFIMAVTKLVVDPMLSFVAKVTAVKVALSSGNQNQNVDSLMAKPLKDQAFATPDKVAELVHK-VN 709 (741)
Q Consensus 631 Dsk~eld~~Lk~~ce~fI~~~t~~i~~pl~~f~~k~~~~~~~~~~~~~~~~l~~~~~~~l~~q~fa~p~~i~~~~~~-~~ 709 (741)
+.+++.....+..|+.++..+...=-+.|.+|++.+++..... ++ ..+..|+=-+...++.++.. .-
T Consensus 574 ~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~~---~~---------~ei~~~~~ySk~~l~kvl~~y~~ 641 (701)
T PF09763_consen 574 EFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQTV---SP---------EEISYQAAYSKQELKKVLKSYPS 641 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcc---Cc---------hhcccchhccHHHHHHHHHhCCh
Confidence 4445555666667777777666666788889999988764431 11 12222333356667777777 66
Q ss_pred HHHHhhcHHHHHHHHhhc
Q 004619 710 AAIQQELPPVMAKMKLYL 727 (741)
Q Consensus 710 ~~i~~~lp~~~~~m~lYL 727 (741)
+.++..+..++.+|.-.+
T Consensus 642 kev~k~i~~l~krveKHf 659 (701)
T PF09763_consen 642 KEVRKGIEALYKRVEKHF 659 (701)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 777777788888888777
No 6
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.80 E-value=1.6 Score=50.92 Aligned_cols=340 Identities=16% Similarity=0.200 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHh
Q 004619 116 YVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAAS 195 (741)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~ 195 (741)
-+.+|......||.+|..+++.|..+ +.+-..++...++||+++..|-..-+.-...-+.++..+.--.-=+.+.+.
T Consensus 15 ~~~~Lh~~i~~cd~~L~~le~~L~~F---q~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~ 91 (508)
T PF04129_consen 15 NFADLHNQIQECDSILESLEEMLSNF---QNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRS 91 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 45566667788999999888766554 344555666666666666655433333223333332221111111122222
Q ss_pred hCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHH
Q 004619 196 FYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVY---LLKFRQLQSRALGMIRSHVLSVLKSASS-----Q-VQA 266 (741)
Q Consensus 196 l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y---~~rfkq~ltRAl~LIr~~~~~~L~~~~~-----~-v~~ 266 (741)
+..+. | ++.|..-+..+..-+.+...+..++++... ..-...|..+|++=||.|+++.++.... + +++
T Consensus 92 I~~~~--v-~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~ 168 (508)
T PF04129_consen 92 ICEGP--V-NEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQ 168 (508)
T ss_pred HhcCC--C-CHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 22211 2 335666555666666666666666665554 5667788899999999999998877522 1 222
Q ss_pred HHHhcCC-------CCCCCCcc-------hhhhhhHHHHHHHHHhHHHHHHHHHhhh----Chh--HHhHH-----HHHH
Q 004619 267 AIRSSGG-------SKTSVSEG-------VEASLIYVRFKAAASELKPVLEEIESRS----SKK--EYVQI-----LEEC 321 (741)
Q Consensus 267 ~l~~~~~-------~~~~~s~~-------~~~aLlY~kF~~~a~~l~~Li~eie~R~----~~~--Ey~sl-----L~dc 321 (741)
.+-.... -.+.+... +.--.++..|+.+...+..|-...-.+. |.+ ...++ -..-
T Consensus 169 ~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~ 248 (508)
T PF04129_consen 169 VLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSYFKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKN 248 (508)
T ss_pred HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCccccccccCCCccccc
Confidence 2111000 00000000 1113445556655544433321111111 000 00000 0112
Q ss_pred HHHHHH--HHhhhhh-----HHHHHHHHHHhc-cCCchhhHHhHHHHHHHHHHHHHHhhccccCCCcc-ChhchhhhHHH
Q 004619 322 HKLYCE--QRLSLVK-----GIVQQRISEFSK-KETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSE-DISSLAPLIDP 392 (741)
Q Consensus 322 ~~~Yf~--~R~~LL~-----p~i~~~l~~~~~-~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~-~~~~l~~~le~ 392 (741)
...||+ .|..+|. |++-.++.+-.. +..+..+.|+-.-.|+-.|..||.--..||..+.. ...-|.+.+++
T Consensus 249 ~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iFRS~~~~L~Dn~t~Ey~F~~~FF~~~~~~~~~if~~If~~ 328 (508)
T PF04129_consen 249 RSSVFSLGRRIDILNSELDAPIIVPQIAEDNSQKYPIEEIFRSLNKALIDNATSEYLFISEFFSGSGDAAEDIFNQIFEP 328 (508)
T ss_pred chhhhhhhHHHHHHhhcccCCccccchhhcccccCCHHHHHHHHHHHHHHhhhHHHHHHHHHHcccccchHHHHHHHHHH
Confidence 233443 5777666 333344433321 24677899999999999999999888899976431 22347777888
Q ss_pred HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004619 393 LSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRARTHIRDEIAN 469 (741)
Q Consensus 393 Lc~~LYd~lRp~Ii~~~~L~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLiFRaq~yi~~~I~~ 469 (741)
-...+.+.+...+-...|.--|-=++-+.+....+ ..+++ ...++.++. -+.--||-|-|..++..|..
T Consensus 329 t~~~~~~~~~~~l~~~~D~iglll~Irl~~~~~~~--~~~R~--ip~ld~y~~----~~~~~LWprF~~i~d~nieS 397 (508)
T PF04129_consen 329 TFSLLQEFTEQLLSNSYDAIGLLLCIRLNQRYQFE--MQRRR--IPVLDSYLN----SLLMLLWPRFQKIMDANIES 397 (508)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH--HHhCC--CCchHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 88888888777655455544333233333332111 12221 123333333 34444677777777766653
No 7
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.0059 Score=70.91 Aligned_cols=150 Identities=17% Similarity=0.077 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 004619 115 HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKT-----KTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDEL 189 (741)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT-----~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~L 189 (741)
.++=-|++.++-++ +.-.++++--.|+.+...+..|..++ .+.+.+|-+|+.|+.-...-.+-+..+.-++..=
T Consensus 543 KhLLiLReQiapFr-iq~tv~e~~lDfs~v~~a~~~vl~~~~~~f~ls~~nallell~E~tp~v~e~~lDsrkeld~qLr 621 (733)
T KOG2604|consen 543 KHLLILREQIAPFR-IQFTVKETSLDFSKVREAFRSVLSNTSKWFSLSSNNALLELLRELTPKVRESQLDSRKELDQQLR 621 (733)
T ss_pred HHHHHHHHhccccc-eeeeeccccccHHHHHHHHHHHHhcccchhhcccchHHHHHHHHcChHHHHhhhhHHHHHHHHHH
Confidence 33444444444444 44567777778999999999999999 7888999999999988877777777777777777
Q ss_pred HHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004619 190 ENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQ 265 (741)
Q Consensus 190 d~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~~~~~~L~~~~~~v~ 265 (741)
..+.+...+....|.++.+.-++.-+|+|+.+...||++|++..|...|.||..++.+.++..+-..++...+-+.
T Consensus 622 ~a~~~fi~~asll~v~~l~~~i~~s~de~~~~~~~~p~~k~~~~~i~~~~q~~~a~~~~V~~lv~~v~~~~~~~~~ 697 (733)
T KOG2604|consen 622 SACEKFIESASLLVVGDLLDFILKSIDELLKYSQATPEHKESLAAIYLLEQSAWAAPTKVTVLVEAVQELIKNKLY 697 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHhHHH
Confidence 7777777887888999999999999999999999999999999999999999999999999988877777665443
No 8
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=91.04 E-value=38 Score=39.90 Aligned_cols=137 Identities=16% Similarity=0.285 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Q 004619 115 HYVNTLMGRIQTCDDILRQVDGTLDLFN----ELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELE 190 (741)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~----~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld 190 (741)
.-+..|-.....||.++.++...|..|. .++.+-..+++++++++-.=+. .|....++++.|..-.-.=+-++
T Consensus 75 ~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~N---rq~v~s~Ls~fVdd~iVpp~lI~ 151 (683)
T KOG1961|consen 75 ENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLEN---RQAVESKLSQFVDDLIVPPELIK 151 (683)
T ss_pred hhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHh---HHHHHHHHHHHhccccCCHHHHH
Confidence 3445666778899999999888876654 4555555666666666654333 33334444444433322222222
Q ss_pred HHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 004619 191 NIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLK---FRQLQSRALGMIRSHVLSVLKSA 260 (741)
Q Consensus 191 ~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~r---fkq~ltRAl~LIr~~~~~~L~~~ 260 (741)
.|.. | -|+..+|..-|+.|+.=+.+.+.-...||+.....- -..+..+|++-||.|++..++..
T Consensus 152 ~I~~-----g-~vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~f 218 (683)
T KOG1961|consen 152 TIVD-----G-DVNEPEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAF 218 (683)
T ss_pred HHHc-----C-CCCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1 356779999999999999999977777777773221 12456789999999999887764
No 9
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.50 E-value=72 Score=33.92 Aligned_cols=108 Identities=14% Similarity=0.234 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 004619 115 HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAA 194 (741)
Q Consensus 115 ~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr 194 (741)
.|...+.......+.+-.++......++.|..+-..+..+...+....++.+..=..|....+.+...++ .+..
T Consensus 35 ~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~------~l~~ 108 (264)
T PF06008_consen 35 SYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ------ELIE 108 (264)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3344444444444444444445555555555555555555555555555555555555555555554433 2222
Q ss_pred h---hCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 004619 195 S---FYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (741)
Q Consensus 195 ~---l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fk 229 (741)
+ ++.-+....+.++..+|..++.-|.-|..+ +|.
T Consensus 109 ~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r-~f~ 145 (264)
T PF06008_consen 109 QVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR-DFT 145 (264)
T ss_pred HHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc-cch
Confidence 2 222122456788999999999999999988 464
No 10
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.42 E-value=44 Score=35.81 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 004619 106 KSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL----VIEKQRLIEFAEAVQS 181 (741)
Q Consensus 106 ~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L----l~eq~~L~~~ae~I~~ 181 (741)
....+..|..-...+..-..+.+.|..+++++....+++.............|...-+.+ -.+++.|.+-+..+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888899999999998888888888888888887777655433 2333333333333222
Q ss_pred cccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHH
Q 004619 182 KLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDE 217 (741)
Q Consensus 182 ~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ 217 (741)
+=.==.||| .++++.+|.+|+.|++.
T Consensus 113 nG~~t~Yid----------vil~SkSfsD~IsRvtA 138 (265)
T COG3883 113 NGTATSYID----------VILNSKSFSDLISRVTA 138 (265)
T ss_pred cCChhHHHH----------HHHccCcHHHHHHHHHH
Confidence 111111111 14789999999999875
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=1e+02 Score=33.80 Aligned_cols=180 Identities=17% Similarity=0.239 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhC--CCCCcc
Q 004619 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFY--SPNMNV 203 (741)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~--sp~~~V 203 (741)
.|+.+-+.++..-..++.|...+..+...++...+-+.+|=..-......|..|+.+|.=.+.--.--+..+ +++..+
T Consensus 41 ~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~ 120 (297)
T KOG0810|consen 41 DVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRT 120 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchh
Confidence 566666677777777778888888888999999999999988888999999999999875544433333322 334345
Q ss_pred CCccHHHHHHHHHHHHHHhhhCCCCcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcch
Q 004619 204 GNGNFFHLLKRLDECILYVEGNPQYAE-SSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGV 282 (741)
Q Consensus 204 ~~~~F~~~L~~LD~ci~Fl~~hp~fkd-a~~Y~~rfkq~ltRAl~LIr~~~~~~L~~~~~~v~~~l~~~~~~~~~~s~~~ 282 (741)
....+..+..++-+-|. +|.. -..|+.+|+.=..|=+..+.. +.++.+..+++-++| +.
T Consensus 121 rrtq~~~~~kkf~~~M~------~f~~~~~~~r~~~k~~i~Rql~i~~~------~~~~de~ie~~ie~g--------~~ 180 (297)
T KOG0810|consen 121 RRTQTSALSKKLKELMN------EFNRTQSKYREEYKERIQRQLFIVGG------EETTDEEIEEMIESG--------GS 180 (297)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhCC------CcCChHHHHHHHHCC--------Ch
Confidence 55555555555555554 2322 345666666555554443332 122333223332211 11
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHhhhC-hhHHhHHHHHHHHHHHH
Q 004619 283 EASLIYVRFKAAASELKPVLEEIESRSS-KKEYVQILEECHKLYCE 327 (741)
Q Consensus 283 ~~aLlY~kF~~~a~~l~~Li~eie~R~~-~~Ey~slL~dc~~~Yf~ 327 (741)
. ...=+-+. ....-++.+.+++.|.+ -.....-+.|+|+.+..
T Consensus 181 ~-~f~~~~i~-~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlD 224 (297)
T KOG0810|consen 181 E-VFTQKAIQ-DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLD 224 (297)
T ss_pred H-HHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 33467889999999973 34566668888888764
No 12
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=73.80 E-value=32 Score=36.89 Aligned_cols=104 Identities=14% Similarity=0.237 Sum_probs=73.2
Q ss_pred hHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004619 91 TNQFYNWFTD----LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (741)
Q Consensus 91 ~~~F~~w~~~----~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (741)
...+..+|.. -+..+..+...+|..+.+.+......=..|+.++...-+.+.... .....+..-+..|..|.
T Consensus 176 i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~----~~~~~~~~r~~~~~~l~ 251 (296)
T PF13949_consen 176 ISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR----KSDQEQKERESALQRLE 251 (296)
T ss_dssp HHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHH
Confidence 4556666653 345666666677888888888888888888887777766664443 22222355566666666
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhCC
Q 004619 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFYS 198 (741)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~s 198 (741)
.--....++...|.+-++||+.|..+..+|..
T Consensus 252 ~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~ 283 (296)
T PF13949_consen 252 AAYDAYKELSSNLEEGLKFYNDLLEILNKLQQ 283 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66677779999999999999999998887643
No 13
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=70.84 E-value=49 Score=36.55 Aligned_cols=103 Identities=10% Similarity=0.179 Sum_probs=78.9
Q ss_pred hHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004619 91 TNQFYNWFTD----LELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (741)
Q Consensus 91 ~~~F~~w~~~----~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (741)
...+..++.. ....+..+...+|..+.++|......=+.|+.++...-+.|...... ...+..-+...++|-
T Consensus 226 ~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~----~~~~~~r~~~l~~L~ 301 (342)
T cd08915 226 LPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNS----NDSLDPREEALQDLE 301 (342)
T ss_pred cHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHHHHHH
Confidence 3677788853 22456677778899999999999999999999988888888666443 444555555566666
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhhC
Q 004619 167 IEKQRLIEFAEAVQSKLKYFDELENIAASFY 197 (741)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~ 197 (741)
.--....++...+.+-++||+.|-.+..+|.
T Consensus 302 ~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~ 332 (342)
T cd08915 302 ASYKKYLELKENLNEGSKFYNDLIEKVNRLL 332 (342)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6666777999999999999999999988774
No 14
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=65.53 E-value=79 Score=27.11 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004619 99 TDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRL 165 (741)
Q Consensus 99 ~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~L 165 (741)
+++|.++.++-+.-...|-.++......+.++-.....+-..-..|+.+....+.+...|.++-++|
T Consensus 2 teLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 2 TELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688888888888888899999999888888888888888888888888888888888777776665
No 15
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.03 E-value=1.1e+02 Score=31.48 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 004619 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQ 170 (741)
Q Consensus 91 ~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~ 170 (741)
...--+|....+..+....++--+.++.....+......+-.+++.....+..|..++.....+...+....+.|.....
T Consensus 64 ~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 64 EEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999998775554
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHH
Q 004619 171 RLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDEC 218 (741)
Q Consensus 171 ~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~c 218 (741)
. ......|...+.-++ ..=...+|-.|=++|+..
T Consensus 144 ~-a~a~~~~~~~~~~~~-------------~~~a~~~~er~e~ki~~~ 177 (221)
T PF04012_consen 144 A-AKAQKKVNEALASFS-------------VSSAMDSFERMEEKIEEM 177 (221)
T ss_pred H-HHHHHHHHHHhccCC-------------ccchHHHHHHHHHHHHHH
Confidence 3 333333333222221 111234677777776663
No 16
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=58.44 E-value=1e+02 Score=34.15 Aligned_cols=93 Identities=12% Similarity=0.228 Sum_probs=69.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004619 103 LAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (741)
Q Consensus 103 ~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~ 182 (741)
..+..+...+|..+.+.|......=+.|+.++.++-..|... +..+...++.=......|..--....++...+.+-
T Consensus 236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~---r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG 312 (337)
T cd09234 236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPV---RKALSETKQKRESTISSLIASYEAYEDLLKKSQKG 312 (337)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345566667899999999999988889998888877776544 22224445555556666666667778999999999
Q ss_pred ccchhhHHHHHHhhCC
Q 004619 183 LKYFDELENIAASFYS 198 (741)
Q Consensus 183 L~yF~~Ld~itr~l~s 198 (741)
++||+.|..+..+|..
T Consensus 313 ~~FY~dL~~~v~~~~~ 328 (337)
T cd09234 313 IDFYKKLEGNVSKLLQ 328 (337)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887743
No 17
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=56.01 E-value=49 Score=38.55 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 004619 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENI 192 (741)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~i 192 (741)
|+..++.|-. ..|+...|.+++.+...++.+..+|...-....++...|+.+-.--.++..+....+.-|.|++++-.-
T Consensus 79 y~dL~~~ly~-~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqh 157 (620)
T KOG1490|consen 79 YADLLNILYD-RDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQH 157 (620)
T ss_pred hHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3334444332 458999999999999999999999999999999999999988888999999999999999999998887
Q ss_pred HHhhC-----CCCC------ccCCccHHHHHHHHHHHHH
Q 004619 193 AASFY-----SPNM------NVGNGNFFHLLKRLDECIL 220 (741)
Q Consensus 193 tr~l~-----sp~~------~V~~~~F~~~L~~LD~ci~ 220 (741)
..++- .+++ .|+..+|...+.+=|.-+.
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevq 196 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ 196 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccC
Confidence 77754 2332 4777889988888776553
No 18
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=55.85 E-value=79 Score=35.21 Aligned_cols=97 Identities=19% Similarity=0.287 Sum_probs=72.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004619 102 ELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNEL---QLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEA 178 (741)
Q Consensus 102 e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L---~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~ 178 (741)
+..+..+...+|..+.++|......=+.|+.++...-+.|... ..........++.=....++|-.--....++...
T Consensus 248 ~e~lF~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~ 327 (356)
T cd09237 248 EKQLFPEELEKFKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAG 327 (356)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5566666778899999999999999999999888877766433 2222223445555566666666666777899999
Q ss_pred HHhcccchhhHHHHHHhhCC
Q 004619 179 VQSKLKYFDELENIAASFYS 198 (741)
Q Consensus 179 I~~~L~yF~~Ld~itr~l~s 198 (741)
+..-++||+.|-.+...|..
T Consensus 328 l~~G~~FY~dL~~~~~~l~~ 347 (356)
T cd09237 328 LPKGLEFYDDLLKMAKDLAK 347 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887743
No 19
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=52.74 E-value=4e+02 Score=30.41 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHHHhhCCCCC---------cc---CCccHHHHHHHHHHHHHHhhhCC-
Q 004619 161 ACDRLVIEKQRL-IEFAEAVQSKLKYFDELENIAASFYSPNM---------NV---GNGNFFHLLKRLDECILYVEGNP- 226 (741)
Q Consensus 161 ~ce~Ll~eq~~L-~~~ae~I~~~L~yF~~Ld~itr~l~sp~~---------~V---~~~~F~~~L~~LD~ci~Fl~~hp- 226 (741)
.-+.++.+...| .++|+-+.+-=+||+.=-...+-..+... .| +...-.+++..|.+.+.=|+++.
T Consensus 193 ~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~ 272 (412)
T PF04108_consen 193 LMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEE 272 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555 56777888888899988887776544211 12 34557778888888888887653
Q ss_pred C----CcChHHHHHHHHHHHHHHHHHHHHHH
Q 004619 227 Q----YAESSVYLLKFRQLQSRALGMIRSHV 253 (741)
Q Consensus 227 ~----fkda~~Y~~rfkq~ltRAl~LIr~~~ 253 (741)
. ..+...........+..++..++.+-
T Consensus 273 ~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (412)
T PF04108_consen 273 RTKKLLQSQRDHIRELYNALSEALEELRKFG 303 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23333344444444444444444433
No 20
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=51.62 E-value=2.3e+02 Score=27.29 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004619 91 TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACD 163 (741)
Q Consensus 91 ~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce 163 (741)
..+|.+++..++..+.+--.++|.. +...+..+..++..++++-+.+..| ...+.+-...|+...+
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~----Fn~sI~sy~~i~~~i~~sq~~i~~l---K~~L~~ak~~L~~~~~ 107 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQG----FNSSIGSYSQILSSISESQERIREL---KESLQEAKSLLGCRRE 107 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCH
Confidence 5789999999999998877777765 4555556666777777777776666 3333333444433333
No 21
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=50.61 E-value=1.6e+02 Score=25.11 Aligned_cols=59 Identities=10% Similarity=0.337 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004619 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV 151 (741)
Q Consensus 90 ~~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V 151 (741)
...+|..|....+..+.+... -.-++.+......+..+..++...-..++.+...-..+
T Consensus 9 ~~~~l~~Wl~~~e~~l~~~~~---~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 9 EADELLDWLQETEAKLSSSEP---GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHCSCTH---SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999844332 11223344444444444444444444444444444444
No 22
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=50.57 E-value=1.1e+02 Score=33.98 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=58.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004619 106 KSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKY 185 (741)
Q Consensus 106 ~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y 185 (741)
..+...+|..+.+.|......=+.|+.++...-+.|..+... ...++.=+..-..|-.--....++...+.+-++|
T Consensus 242 F~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~l~~L~~ay~~y~el~~~l~eG~kF 317 (339)
T cd09238 242 FKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFSQIFDV----EGWRAATESHATQIRAAVAKYRELREGMEEGLRF 317 (339)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344556788888888888888888888888877777654321 1111111122223333334555888899999999
Q ss_pred hhhHHHHHHhhC
Q 004619 186 FDELENIAASFY 197 (741)
Q Consensus 186 F~~Ld~itr~l~ 197 (741)
|+.|-.+..+|.
T Consensus 318 Y~dL~~~~~~l~ 329 (339)
T cd09238 318 YSGFQEAVRRLK 329 (339)
T ss_pred HHHHHHHHHHHH
Confidence 999998887764
No 23
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.06 E-value=3.6e+02 Score=33.21 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCC
Q 004619 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGN 205 (741)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~ 205 (741)
+...+-.+.+.-++.+.++.+.-..+.++...|.+.+++..+.|+.|.+-++.+-..+. ...|.++..-
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~-----------~~~P~LS~AE 634 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN-----------SQLPVLSEAE 634 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccCCCCCHHH
Confidence 34445566667778888888888999999999999999999999988887766544321 2346666555
Q ss_pred ccHHHHHHHHHHHH
Q 004619 206 GNFFHLLKRLDECI 219 (741)
Q Consensus 206 ~~F~~~L~~LD~ci 219 (741)
..|..-|+++.+-+
T Consensus 635 r~~~~EL~~~~~~l 648 (717)
T PF10168_consen 635 REFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777777655
No 24
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=49.18 E-value=5.3e+02 Score=30.77 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004619 91 TNQFYNWFTDLELAMKSETEEKYR---HYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI 167 (741)
Q Consensus 91 ~~~F~~w~~~~e~~~~~~~~~~y~---~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~ 167 (741)
..+.-.|.+.|+..+..-..+.+. ............++.++.++....+.++++.+. .+ .+.+...-.....
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~--~~---~~~i~~~l~~a~~ 83 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQS--EI---ENEIQPQLRDAAE 83 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hc---cchhHHHHHHHHH
Confidence 446667888888777766665543 233345555667777777777777777555433 01 1222333233332
Q ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhh--CCCCcChHHH
Q 004619 168 EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEG--NPQYAESSVY 234 (741)
Q Consensus 168 eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~--hp~fkda~~Y 234 (741)
+...|..-.+....-+.--..|..|-..|.+-...+...+|......|++.=.-|.. .+.+.+..+|
T Consensus 84 e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~ 152 (593)
T PF06248_consen 84 ELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKIL 152 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHH
Confidence 323333322322233333333333333333322244667777655555555555554 4566665554
No 25
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=49.11 E-value=86 Score=30.47 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=49.0
Q ss_pred HHHHhhhCCCCcChHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhhHHHH
Q 004619 218 CILYVEGNPQYAESSVYLLKFRQLQSRA------LGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASLIYVRF 291 (741)
Q Consensus 218 ci~Fl~~hp~fkda~~Y~~rfkq~ltRA------l~LIr~~~~~~L~~~~~~v~~~l~~~~~~~~~~s~~~~~aLlY~kF 291 (741)
-+.|+.+| .|-++.-..||+.+.... +.+|...+.+ ++.-..-|. ..+..+.+.||
T Consensus 8 ~~~~~~~~--~~~~~~~~~rf~~v~~~~~~D~~~l~liE~~ids-~~~Y~~~V~---------------~mE~~l~t~rf 69 (152)
T PF11554_consen 8 VVSFVSSH--HKGSEETMNRFKRVISITKDDEDALDLIEELIDS-FKEYVLIVY---------------RMEDQLQTWRF 69 (152)
T ss_dssp -------------TTSHHHHHHHHHHHHTTSHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHCC
T ss_pred HHHHHHHH--HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHHH
Confidence 34566554 366777788888766544 4444443332 222222111 12457889999
Q ss_pred HHHHHhHHHHHHHHHhhhChhHHhHHHHHHH
Q 004619 292 KAAASELKPVLEEIESRSSKKEYVQILEECH 322 (741)
Q Consensus 292 ~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~ 322 (741)
+--++.+|.+++++.++- +..+.+++++|+
T Consensus 70 rlegeeYRd~vE~LDr~R-tnaH~a~ISd~k 99 (152)
T PF11554_consen 70 RLEGEEYRDLVEELDRTR-TNAHNAAISDCK 99 (152)
T ss_dssp TS-HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999653 457888888887
No 26
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=48.89 E-value=5.9e+02 Score=31.23 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=59.6
Q ss_pred hhhcChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhh
Q 004619 86 AVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQH-----------HAVATK 154 (741)
Q Consensus 86 ~~i~~~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~-----------~~V~~k 154 (741)
+.+..+.|+.+||.+=-+. +..|..-+ +.+|.++..|..|-+.| .... .
T Consensus 33 a~~~~~~qi~~Wi~k~k~~------------l~~L~~~l-------~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~-~ 92 (683)
T PF08580_consen 33 ALSGAAEQILDWIQKAKDV------------LYGLREGL-------EEIDSAISRFLDLIEVYVSAIEDLQLREDIAN-S 92 (683)
T ss_pred hhHHHHHHHHHHHHHHHHH------------HHHHHHhH-------HHHHHHHHHHHHHHHhhccccccccccccccc-c
Confidence 4455677889998653332 22332222 44444555555554444 2233 5
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHh
Q 004619 155 TKTLHDACDRLVI-EKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYV 222 (741)
Q Consensus 155 T~~l~~~ce~Ll~-eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl 222 (741)
.-++.+.|.+|+. =+..|..+-+.+.--+.|.+-.+.+ ...+-..||+|+.-+
T Consensus 93 ~~dl~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~v---------------lg~l~~EIe~~~~~v 146 (683)
T PF08580_consen 93 LFDLIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDV---------------LGDLDNEIEECIRLV 146 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 7789999999987 3444555555555555555444433 445667889998764
No 27
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=46.97 E-value=4e+02 Score=28.65 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004619 211 LLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRS 270 (741)
Q Consensus 211 ~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~~~~~~L~~~~~~v~~~l~~ 270 (741)
+=+.+..--.||.+||.|++... +.--..|..|--.++-.++.+.|=.+..+|.+.+.+
T Consensus 33 ~~~a~~~E~~fF~~~~~~~~~~~-~~G~~~L~~~L~~~L~~~I~~~LP~l~~~I~~~l~~ 91 (295)
T PF01031_consen 33 IEEARQKEKEFFSNHPWYSSPAD-RCGTPALRKRLSELLVEHIRKSLPSLKSEIQKKLQE 91 (295)
T ss_dssp HHHHHHHHHHHHHHSTTTGGGGG-GSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCccc-ccchHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34567788899999999998332 222355666666677777777777777777666543
No 28
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.55 E-value=2.1e+02 Score=32.94 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004619 111 EKYRHYVN-TLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (741)
Q Consensus 111 ~~y~~y~~-~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 183 (741)
+.+..|.+ +|+.....+...+...++.-...+++......|+.+-..++..-+++-.|...+.+.-..+.+++
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44445555 88889999999999999988888899888999988888888887777777777665555554443
No 29
>PRK09039 hypothetical protein; Validated
Probab=45.50 E-value=4.3e+02 Score=29.42 Aligned_cols=133 Identities=15% Similarity=0.082 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHH
Q 004619 107 SETEEKYRHYVNTLMGRIQTCDDIL----RQVDGTLDLFNELQLQHHAVATKTKTLHDACD----RLVIEKQRLIEFAEA 178 (741)
Q Consensus 107 ~~~~~~y~~y~~~L~~~~~~~d~ll----~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce----~Ll~eq~~L~~~ae~ 178 (741)
+++-+....-+++|+..+...-.+| ......-..+.+|+.+|......=..+..+-+ ..-..+.++..+.++
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 3334444555555555555544444 22333344444455555544443333433322 223346666777777
Q ss_pred HHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHH
Q 004619 179 VQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRAL 246 (741)
Q Consensus 179 I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl 246 (741)
+.+-..-|++--+-..+|++--. ....-|..|+..|+..+..- +++...+..+++-+..|+
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~-----aLr~Qla~le~~L~~ae~~~--~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIA-----ALRRQLAALEAALDASEKRD--RESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 77777777777666666665322 23334999999999998766 888888888888777777
No 30
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=45.44 E-value=1.8e+02 Score=32.45 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=66.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004619 103 LAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (741)
Q Consensus 103 ~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~ 182 (741)
..+..+...+|..+.+.|......=+.|+.++...-+.|...... ...++.-..+...|-.--....++...+.+-
T Consensus 253 e~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~----~~~~~~re~~lq~L~~ay~~y~el~~nl~eG 328 (353)
T cd09236 253 EDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKG----DPATKERERALQSLDLAYFKYKEIVSNLDEG 328 (353)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667899999999999988899998888888777543221 2334444555566666666778999999999
Q ss_pred ccchhhHHHHHHhhC
Q 004619 183 LKYFDELENIAASFY 197 (741)
Q Consensus 183 L~yF~~Ld~itr~l~ 197 (741)
++||+.|-.+..+|.
T Consensus 329 ~kFY~dL~~~~~~~~ 343 (353)
T cd09236 329 RKFYNDLAKILSQFR 343 (353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877764
No 31
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.88 E-value=1.9e+02 Score=25.32 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=12.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004619 152 ATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (741)
Q Consensus 152 ~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (741)
..+++.+-+..+.-++.-..+.+-+.++++.++
T Consensus 53 l~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 53 LHNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444433
No 32
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=43.72 E-value=3e+02 Score=29.18 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004619 95 YNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIE 174 (741)
Q Consensus 95 ~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~ 174 (741)
.+|-.+|+++ ++.|.++..+++.+ |..|=... ..+..|-..-..|...-+-|+..-+-++..|..|+.
T Consensus 81 NkWs~el~~Q-----e~vF~~q~~qvNaW----Dr~LI~ng---ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~ 148 (254)
T KOG2196|consen 81 NKWSLELEEQ-----ERVFLQQATQVNAW----DRTLIENG---EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELED 148 (254)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhHH----HHHHHhCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777664 45666666666554 44442211 233344444455555566666666666666666666
Q ss_pred HHHHHHhcc
Q 004619 175 FAEAVQSKL 183 (741)
Q Consensus 175 ~ae~I~~~L 183 (741)
+-..+++.+
T Consensus 149 ~L~~lE~k~ 157 (254)
T KOG2196|consen 149 LLDPLETKL 157 (254)
T ss_pred HHHHHHHHH
Confidence 655544444
No 33
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=42.89 E-value=7.5e+02 Score=30.73 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhh
Q 004619 207 NFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQVQAAIRSSGGSKTSVSEGVEASL 286 (741)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~~~~~~L~~~~~~v~~~l~~~~~~~~~~s~~~~~aL 286 (741)
....-|..+-.||.=+..=|+|.|...-+..++.=+ -.+++--++..|. .. ..
T Consensus 148 ~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrL---Ea~vsp~Lv~al~-----------~~---------~~---- 200 (766)
T PF10191_consen 148 KIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRL---EALVSPQLVQALN-----------SR---------DV---- 200 (766)
T ss_pred HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH---HHHhhHHHHHHHH-----------hc---------CH----
Confidence 455678888889988888888877655555444322 2223333322222 10 01
Q ss_pred hHHHHHHHHHhHHHHHHHHHhhhChhHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcc---CCchhhHHhHHHHHHH
Q 004619 287 IYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVKGIVQQRISEFSKK---ETLPSLTRSGCAYLMQ 363 (741)
Q Consensus 287 lY~kF~~~a~~l~~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~p~i~~~l~~~~~~---~~l~~l~r~~~~~l~~ 363 (741)
..+..+..++..|.+ +.+..+.|+.+|.. |+.+.| .+.... .++.....+.+..+..
T Consensus 201 ------~~~~~~~~if~~i~R----------~~~l~~~Y~~~r~~---~l~~~W-~~~~~~~~~~~~~~~L~~fyd~ll~ 260 (766)
T PF10191_consen 201 ------DAAKEYVKIFSSIGR----------EPQLEQYYCKCRKA---PLQRLW-QEYCQSDQSQSFAEWLPSFYDELLS 260 (766)
T ss_pred ------HHHHHHHHHHHHcCC----------HHHHHHHHHHHHHH---HHHHHH-HHHhhhccchhHHHHHHHHHHHHHH
Confidence 122233344444422 34567889999984 555555 333322 3577788888889999
Q ss_pred HHHHHHHhhccccCCCcc-ChhchhhhHHHHHHHHHHhhcccccc-cC--CHHHHHHHHHHHHH
Q 004619 364 VCQLEHQLFDHFFPSSSE-DISSLAPLIDPLSTFLYDILRPKLIH-ET--NVDLLCELVDILKV 423 (741)
Q Consensus 364 ~C~~E~~Lf~~FF~~~~~-~~~~l~~~le~Lc~~LYd~lRp~Ii~-~~--~L~~Lcel~~iL~~ 423 (741)
.++.|.+-..+.||.+.. -...+.+.|.+|.-.+...+.-.+-. .. .++.|+++-.+-..
T Consensus 261 ~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~ 324 (766)
T PF10191_consen 261 LLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEH 324 (766)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Confidence 999999999999998641 00122333333333333333333211 12 26777776655443
No 34
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=39.78 E-value=6.2e+02 Score=28.88 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHH
Q 004619 93 QFYNWFTDLELAMK-----SETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQ-HHAVATKTKTLHDACDRLV 166 (741)
Q Consensus 93 ~F~~w~~~~e~~~~-----~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~-~~~V~~kT~~l~~~ce~Ll 166 (741)
.+-.+|.+-...+. ..+.+.|...++-|..-..+.++++..+.+.++.+...... ...+.++...+...+..+.
T Consensus 214 sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~ 293 (412)
T PF04108_consen 214 SLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALS 293 (412)
T ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443 23335566666666666666666666666666666665444 2225555666666666666
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHhh
Q 004619 167 IEKQRLIEFAEAVQSKLKYFDELENIAASF 196 (741)
Q Consensus 167 ~eq~~L~~~ae~I~~~L~yF~~Ld~itr~l 196 (741)
..-..|.++.+.++.++.-|..++.+....
T Consensus 294 ~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~ 323 (412)
T PF04108_consen 294 EALEELRKFGERLPSYLAAFHDFEERWEEE 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677667777776666666655443
No 35
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=37.19 E-value=2.4e+02 Score=25.85 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004619 110 EEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRL 172 (741)
Q Consensus 110 ~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L 172 (741)
.+.++.|....+..-.++..|-..++++...|.+|...-......+....... +++.|=.++
T Consensus 7 ~eqR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~ 68 (101)
T PF07303_consen 7 SEQRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHH
Confidence 45677888888888888888999999999999999988888888888888777 777666665
No 36
>smart00150 SPEC Spectrin repeats.
Probab=37.14 E-value=2.6e+02 Score=23.67 Aligned_cols=91 Identities=13% Similarity=0.248 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHH
Q 004619 90 NTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVAT----KTKTLHDACDRL 165 (741)
Q Consensus 90 ~~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~----kT~~l~~~ce~L 165 (741)
+..++.+|....+..+.+... -.-.+.+....+.++.+..+++..-..++.+...-..+.+ ....+...++.|
T Consensus 6 ~~~~l~~Wl~~~e~~l~~~~~---~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l 82 (101)
T smart00150 6 DADELEAWLSEKEALLASEDL---GKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEEL 82 (101)
T ss_pred HHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 467889999999966554322 1234444444445555555544444444444433333322 233455555555
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 004619 166 VIEKQRLIEFAEAVQSKL 183 (741)
Q Consensus 166 l~eq~~L~~~ae~I~~~L 183 (741)
-..-..|...++.-...|
T Consensus 83 ~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 83 NERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555555555555444433
No 37
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=36.95 E-value=2.2e+02 Score=25.62 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004619 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (741)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 183 (741)
.|+.|-..+..+-..++.|...+...-..+.......++|-.....-..++.+|...|
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l 66 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKL 66 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333223333333333344444444444433
No 38
>PHA03386 P10 fibrous body protein; Provisional
Probab=36.04 E-value=1.7e+02 Score=26.43 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004619 127 CDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLK 184 (741)
Q Consensus 127 ~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~ 184 (741)
+-.|++++.+.-+.++.|+.+-..|.+++..|....++| ..+......|++.|.
T Consensus 7 Ll~Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL----~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 7 LTQILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQL----TELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHH----HHHHHHHHHHHHhcC
Confidence 445778888888888889888888888888888888887 345555555655554
No 39
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=34.50 E-value=57 Score=30.92 Aligned_cols=105 Identities=12% Similarity=0.216 Sum_probs=35.7
Q ss_pred hhhhcC-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004619 85 EAVLVN-TNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACD 163 (741)
Q Consensus 85 ~~~i~~-~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce 163 (741)
..++++ -.+.-.+...+..++.+---..|..|+. |.++....++. ++.+..-+..+...-..|.+.-..-.+..+
T Consensus 25 ~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~-Ls~~L~g~~~~---i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~ 100 (133)
T PF06148_consen 25 YVSLEDLRKDLRSYSKELKNELIELINDDYADFVS-LSTNLVGMDEK---IEELRKPLSQFREEVESVRDELDNTQEEIE 100 (133)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355665 4677778888899988888888888777 66665555554 444455566666667777777777788888
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 004619 164 RLVIEKQRLIEFAEAVQSKLKYFDELENIA 193 (741)
Q Consensus 164 ~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 193 (741)
..+.+++++.+.-..++..+.+.+.++.+-
T Consensus 101 ~~l~~~~~l~~~k~~l~~~l~~~~~~~kle 130 (133)
T PF06148_consen 101 DKLEERKELREEKALLKLLLDISESLEKLE 130 (133)
T ss_dssp HHHHHHHHHHHHHHT-SSSSHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 888888888887777777666666665543
No 40
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=33.40 E-value=3.3e+02 Score=28.96 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=86.2
Q ss_pred cChHHHHHHHHH-HH-HHHhhhhH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHH
Q 004619 89 VNTNQFYNWFTD-LE-LAMKSETE-EKYRHYVNTLMG-----RIQTCDDILRQVDGTLDLFNEL-QLQHHAVATKTKTLH 159 (741)
Q Consensus 89 ~~~~~F~~w~~~-~e-~~~~~~~~-~~y~~y~~~L~~-----~~~~~d~ll~~~~~~l~~l~~L-~~~~~~V~~kT~~l~ 159 (741)
+....|++||.. |. ..+.++.+ ..|. +|.. .-+.+|..++.+...-..+.++ ......+.....++.
T Consensus 6 ~e~~~FL~W~c~~V~~~NvLS~~El~~~~----~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e~~le~Le~el~~l~ 81 (256)
T PF14932_consen 6 EEFESFLDWFCSNVNESNVLSEEELQAFE----ELQKSGKILEGEALDEALKTISAFSPKLLELEEEDLEALEEELEALQ 81 (256)
T ss_pred ccHHHHHHHHHccCChhccCCHHHHHHHH----HHHHcCCcCCHHHHHHHHHHcccccCCccccchHHHHHHHHHHHHHH
Confidence 357899999987 43 33344333 3443 2222 1233444443332221111111 234455666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHhhCCCCCc------cCCccHHHHHHHHHHHHHHhhh--------
Q 004619 160 DACDRLVIEKQRLIEFAEAVQSKLKYFDELEN-IAASFYSPNMN------VGNGNFFHLLKRLDECILYVEG-------- 224 (741)
Q Consensus 160 ~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~-itr~l~sp~~~------V~~~~F~~~L~~LD~ci~Fl~~-------- 224 (741)
+.++.....-+.+..++..+...+...+.... ....+...+.. -.+.....++..+-.-+.++..
T Consensus 82 ~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~~~~~ 161 (256)
T PF14932_consen 82 EYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSGQQQN 161 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 77777777777888888888877766655433 23334322211 1233455666666666666653
Q ss_pred CC---CCcChHHHHHHHHHHHHHHHHH
Q 004619 225 NP---QYAESSVYLLKFRQLQSRALGM 248 (741)
Q Consensus 225 hp---~fkda~~Y~~rfkq~ltRAl~L 248 (741)
+| .+-+-+.|+.+-.+| +++|++
T Consensus 162 ~~~flsq~~l~~Y~~~ee~~-t~~L~~ 187 (256)
T PF14932_consen 162 PPVFLSQMPLEQYLSQEEQF-TKYLTS 187 (256)
T ss_pred CCchhhhCCHHHHHHHHHHH-HHHHHH
Confidence 22 456788888887777 666653
No 41
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.92 E-value=1.7e+02 Score=30.60 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004619 120 LMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (741)
Q Consensus 120 L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae 177 (741)
.....+..+.+-+++.+.-+.++..+.+...+..+...+....++|++|-.+|.+-.+
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3444455566666777777777777777777777777777777777777666655444
No 42
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=32.26 E-value=3.8e+02 Score=29.67 Aligned_cols=83 Identities=11% Similarity=0.259 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004619 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (741)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (741)
+|..+.++|......=+.|+.++..+-..|.... .+...++.=......|-.--....++...+.+-++||+.|-.
T Consensus 248 ~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~----~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~ 323 (339)
T cd09235 248 VYGPLQKQVQESLSRQESLLANIQVAHQEFSKEK----QSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTE 323 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4888888888888888888888877776664321 112222333445555555556677889999999999999998
Q ss_pred HHHhhCC
Q 004619 192 IAASFYS 198 (741)
Q Consensus 192 itr~l~s 198 (741)
+..+|..
T Consensus 324 ~~~~~~~ 330 (339)
T cd09235 324 ILVKFQN 330 (339)
T ss_pred HHHHHHH
Confidence 8887743
No 43
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=32.24 E-value=5.9e+02 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHhhhCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004619 207 NFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (741)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~fkda~~Y~~rfkq~ltRAl~LIr~~~~~~L~~~ 260 (741)
.+.|.|..+.+-.-||+.|-| .+|+.-++..|...-.++
T Consensus 141 km~PVL~~~~D~vL~LKHNLN---------------A~AI~sL~~e~~~~~~di 179 (201)
T PF11172_consen 141 KMQPVLAAFRDQVLYLKHNLN---------------AQAIASLQGEFSSIESDI 179 (201)
T ss_pred hcChHHHHHHHHHHHHhcccc---------------HHHHHHHHHHHHHHHHHH
Confidence 455666666666666666654 577777777776544333
No 44
>COG1084 Predicted GTPase [General function prediction only]
Probab=32.22 E-value=3.3e+02 Score=30.37 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 004619 112 KYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELEN 191 (741)
Q Consensus 112 ~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~ 191 (741)
=|+...|-|-+ ++++..-|..++.+-..++.+...|..-.....+..++.+=.=+--.|...+.+.|+..|.|-...-.
T Consensus 78 FY~eLidvl~d-~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~ 156 (346)
T COG1084 78 FYRELIDVLVD-IDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARD 156 (346)
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35555555543 44777788889999999999999998888777666654443333457888889999999999888888
Q ss_pred HHHhhC-----CCCC------ccCCccHHHHHHH
Q 004619 192 IAASFY-----SPNM------NVGNGNFFHLLKR 214 (741)
Q Consensus 192 itr~l~-----sp~~------~V~~~~F~~~L~~ 214 (741)
.+++|- .|+. +|+..+|...+.+
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhc
Confidence 888864 3433 3666666655443
No 45
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.12 E-value=3.1e+02 Score=27.18 Aligned_cols=14 Identities=0% Similarity=0.155 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHH
Q 004619 91 TNQFYNWFTDLELA 104 (741)
Q Consensus 91 ~~~F~~w~~~~e~~ 104 (741)
+.+.-.+...+...
T Consensus 95 ~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 95 AKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhh
Confidence 44444455555544
No 46
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=29.99 E-value=4.8e+02 Score=24.67 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcccchhhHH---------HHHHhhCCCCCccCCccHHHHHHH
Q 004619 169 KQRLIEFAEAVQSKLKYFDELE---------NIAASFYSPNMNVGNGNFFHLLKR 214 (741)
Q Consensus 169 q~~L~~~ae~I~~~L~yF~~Ld---------~itr~l~sp~~~V~~~~F~~~L~~ 214 (741)
+.....+......-+.-|..+. .|.|.+.-.+..++.+....++..
T Consensus 87 ~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~tdeei~~~~~~ 141 (151)
T cd00179 87 KTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLES 141 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHc
Confidence 4455566666777777777776 344444333333566666666654
No 47
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=29.54 E-value=3.2e+02 Score=24.63 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004619 126 TCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEF 175 (741)
Q Consensus 126 ~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ 175 (741)
....+..+..+-+..=..|..+|.....+-+.|++..+.|+..+++...+
T Consensus 68 qma~lftqaqsfltqrqql~nqyqqlvs~~s~lq~n~nalmk~kekitmv 117 (125)
T PRK15352 68 QMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQKNFNALMKKKEKITMV 117 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 44556667777788888899999999999999999999999877766543
No 48
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=29.40 E-value=9.7e+02 Score=27.98 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCC
Q 004619 170 QRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQY 228 (741)
Q Consensus 170 ~~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~f 228 (741)
..+.+-.++-..+.+|+..|+++...|.+.. -.+..+.+..|=.+|..+-.|..|
T Consensus 86 ~~l~~~~~ea~d~~~fL~~l~~~~~~l~~~~----~~~i~~~i~~l~~~l~~iw~~S~~ 140 (579)
T PF08385_consen 86 RELKEALNEAKDNNKFLKPLEPPFELLEASD----LSEIQESIPPLFHHLRLIWRISRY 140 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3555777888889999999999999885532 235556666666666666777764
No 49
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=29.30 E-value=5.9e+02 Score=27.04 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHHHHhhhC
Q 004619 171 RLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGN 225 (741)
Q Consensus 171 ~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~h 225 (741)
.+..+.+.+.+-...|.+...- .-..|+..+..-+|-+-+..-|.|+.+|..+
T Consensus 136 ~l~~l~~~v~~l~~~~~~~~~~--~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y 188 (256)
T PF14932_consen 136 ELNQLLGEVSKLASELAHAHSG--QQQNPPVFLSQMPLEQYLSQEEQFTKYLTSY 188 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccCCCCchhhhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442111 1234555567788999999999999998753
No 50
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.81 E-value=5.1e+02 Score=30.53 Aligned_cols=78 Identities=13% Similarity=0.246 Sum_probs=44.0
Q ss_pred cChHHHHHHHHHHHHHHhhhhHHHHH---------HHHHHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 004619 89 VNTNQFYNWFTDLELAMKSETEEKYR---------HYVNTLMG----RIQTCDDIL-------RQVDGTLDLFNELQLQH 148 (741)
Q Consensus 89 ~~~~~F~~w~~~~e~~~~~~~~~~y~---------~y~~~L~~----~~~~~d~ll-------~~~~~~l~~l~~L~~~~ 148 (741)
.+..+.-.|...++.-+..=+...-+ .|++.|.. ....++.+. .+..++...+.++.-.-
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46777888998888766554443322 44444433 222333322 33445555566666666
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 004619 149 HAVATKTKTLHDACDRLV 166 (741)
Q Consensus 149 ~~V~~kT~~l~~~ce~Ll 166 (741)
..+.++|+.|+..||+-|
T Consensus 477 ~~l~~~Tr~Lq~~iE~~I 494 (507)
T PF05600_consen 477 DALVERTRELQKQIEADI 494 (507)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666544
No 51
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.56 E-value=5.8e+02 Score=25.94 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004619 113 YRHYVNTLMGRIQTCDDILR 132 (741)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~ 132 (741)
-+.|+++|..++.+.+.+..
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~ 38 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQ 38 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 35678888877777666654
No 52
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=28.12 E-value=6.9e+02 Score=25.89 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004619 111 EKYRHYVNTLMGRIQTCDDILRQVDG---------------TLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEF 175 (741)
Q Consensus 111 ~~y~~y~~~L~~~~~~~d~ll~~~~~---------------~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ 175 (741)
..++.|.++|......++.-+..+.. +-..|..|...|.....+.-.+..+|.+|=.+-.++..-
T Consensus 132 naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 132 NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667776666666655533222 344566899999999999999999999999888888887
Q ss_pred HHHHHhcc
Q 004619 176 AEAVQSKL 183 (741)
Q Consensus 176 ae~I~~~L 183 (741)
+.+.+.+.
T Consensus 212 ~~~~~~~~ 219 (221)
T PF05700_consen 212 AAELKENQ 219 (221)
T ss_pred HHHHhccc
Confidence 77766543
No 53
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=27.85 E-value=6.5e+02 Score=25.44 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCCCCCc-cCCccHHHHHHHHHHHHHHhhh
Q 004619 161 ACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYSPNMN-VGNGNFFHLLKRLDECILYVEG 224 (741)
Q Consensus 161 ~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~-V~~~~F~~~L~~LD~ci~Fl~~ 224 (741)
..+.++.+-..++.-|+.|... |...|++..+. +.++++..+...+|+.+++++.
T Consensus 41 ~~~~~~~~i~~lE~~aD~i~~~---------i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~ 96 (214)
T PF01865_consen 41 DVEELLEEIKELEHEADEIKRE---------IREELYKSFITPFDREDILRLISSLDDIADYIED 96 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667777776654 44455543332 5788999999999999999874
No 54
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=26.88 E-value=9.6e+02 Score=27.14 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHH
Q 004619 92 NQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQH------HAVATKTKTLHDACDRL 165 (741)
Q Consensus 92 ~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~------~~V~~kT~~l~~~ce~L 165 (741)
.+...=++++-..+......+--...+++....+..+.++.++......++.+-.+. ..++.=|..+.++.+++
T Consensus 230 d~L~~~ltrL~~~~~~~~v~~l~~~~~~~a~~~~~~~~ll~~l~~l~~~l~~ll~~l~~~~lL~Nle~lt~~LA~as~~l 309 (370)
T PLN03094 230 DELVGICTRLAREMEAIGVAKMYALAERAADLMEEARPLLLKIQAMAEDLQPLLSEVRDSGLLKEVEKLTRVAAEASEDL 309 (370)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 344444666666665554455556667777777777777777666666666663322 23344445555555544
Q ss_pred HHHH------HHHHHHHHHHHhcccchhhHHHHHHhhCCCCCccCCccHHHHHHHHHHHH
Q 004619 166 VIEK------QRLIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECI 219 (741)
Q Consensus 166 l~eq------~~L~~~ae~I~~~L~yF~~Ld~itr~l~sp~~~V~~~~F~~~L~~LD~ci 219 (741)
-.-. +.+..+.+.+.+--.-|..++.++..++. .+.++.|..-|.++=++|
T Consensus 310 ~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~---ft~D~~~r~~Lr~li~~L 366 (370)
T PLN03094 310 RRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISG---FTGDEATRRNLKQLIQSL 366 (370)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHH
Confidence 3321 12355666666666777777777777655 456667888877776665
No 55
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.58 E-value=7.5e+02 Score=26.32 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHH------HHHHH--HHHHHHHH
Q 004619 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATK--------TKTLHDACD------RLVIE--KQRLIEFA 176 (741)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~k--------T~~l~~~ce------~Ll~e--q~~L~~~a 176 (741)
-+.|++.|+..+.+.+.+...+-.-...+.+...+|..+-.- +..|+..|. ..+++ ....+.++
T Consensus 59 mkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~ 138 (243)
T cd07666 59 MNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLL 138 (243)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888875553333334444444443322 222332222 22222 22234678
Q ss_pred HHHHhcccchhhHHHHHH
Q 004619 177 EAVQSKLKYFDELENIAA 194 (741)
Q Consensus 177 e~I~~~L~yF~~Ld~itr 194 (741)
+.|.+++.|...+-.+.+
T Consensus 139 ~~Lkeyv~y~~slK~vlk 156 (243)
T cd07666 139 PVIHEYVLYSETLMGVIK 156 (243)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888887776554
No 56
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.32 E-value=4.2e+02 Score=22.78 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004619 125 QTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSK 182 (741)
Q Consensus 125 ~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~ 182 (741)
+.++.|-..+..+++.+..|+..-....++-.++.+.-+.|-.+-.+|..=.....++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777777777777777777776666666555544443
No 57
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=26.12 E-value=1.4e+02 Score=26.58 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhhhhhcchhhhhchHHHHHHHHHHHHHHHHHHH
Q 004619 387 APLIDPLSTFLYDILRPKLIHETNVDLLCELVDILKVEVLGEQLSRRSESLAGLRPTLERILADVHERLTFRA 459 (741)
Q Consensus 387 ~~~le~Lc~~LYd~lRp~Ii~~~~L~~Lcel~~iL~~e~l~e~~~~~~~~~~~~~~~~~~lLqD~QeRLiFRa 459 (741)
...|+.+.+.+=++|||-.| |.-+.++|..++.+-...++.+....-..+|..-|+..|++=+||+
T Consensus 5 k~nL~af~~yi~ktl~P~yI-------l~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqa 70 (89)
T cd08816 5 KRNLQRFRDYIKKILRPSYI-------LGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQA 70 (89)
T ss_pred HHHHHHHHHHHHHhhchHHH-------HHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHH
Confidence 34566777777788888755 6778889988764443332223333334566777788899999976
No 58
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.16 E-value=9.4e+02 Score=26.45 Aligned_cols=40 Identities=13% Similarity=0.359 Sum_probs=25.1
Q ss_pred hhhhhcChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 004619 84 IEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQ 125 (741)
Q Consensus 84 ~~~~i~~~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~ 125 (741)
|...+-.+..||-||...|....+. -.|-.-++++.....
T Consensus 26 ~Gl~ml~AgA~Y~~yQ~~EQAr~~A--~~fA~~ld~~~~kl~ 65 (301)
T PF06120_consen 26 PGLVMLGAGAWYYFYQNAEQARQEA--IEFADSLDELKEKLK 65 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHH
Confidence 4555566889999998888874443 335555555544433
No 59
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=24.88 E-value=2.4e+02 Score=24.30 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHH
Q 004619 113 YRHYVNTLMGRIQTCDDILRQVDGT-LDLFNELQLQHHAVATKTKTLHDAC 162 (741)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~-l~~l~~L~~~~~~V~~kT~~l~~~c 162 (741)
-++|+.++.......-.-+++-+.| |..|++|...+..++.-+++|+-+|
T Consensus 15 lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 15 LKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444443 6778899999999999999999877
No 60
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.97 E-value=7e+02 Score=24.52 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004619 123 RIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (741)
Q Consensus 123 ~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (741)
+.+.+....+..+.+++.+++....-..+.++.....+....|-
T Consensus 5 y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~ 48 (157)
T PF04136_consen 5 YLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLH 48 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444444455666666666666666666666555555555554
No 61
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=23.71 E-value=5.4e+02 Score=24.73 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=10.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhhHHHHHHhhCCCC
Q 004619 150 AVATKTKTLHDACDRLVIEKQRLIEFAEAV-QSKLKYFDELENIAASFYSPN 200 (741)
Q Consensus 150 ~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I-~~~L~yF~~Ld~itr~l~sp~ 200 (741)
.+..+-..|...+=+++..+.-+....-.| .+-=.--..|+.+.+.++.|+
T Consensus 76 ~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p~ 127 (141)
T PF13874_consen 76 EARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAPA 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 333333344444444444444333333333 222223355666777777776
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.65 E-value=1.5e+03 Score=29.83 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004619 113 YRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV---------ATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (741)
Q Consensus 113 y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V---------~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 183 (741)
|..-..++.......+..+.++++.+..+..+......+ ....+.++..|++++....++ .++|...+
T Consensus 846 ~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~~ 922 (1201)
T PF12128_consen 846 VKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRL---REELKKAV 922 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344445555555555565666666655544443333221 112345557777777655443 33344333
Q ss_pred cchh-------------hHHHHHHhhCC-CCCccCCccHHHHHHHHHHHHHHhhhCCCCc
Q 004619 184 KYFD-------------ELENIAASFYS-PNMNVGNGNFFHLLKRLDECILYVEGNPQYA 229 (741)
Q Consensus 184 ~yF~-------------~Ld~itr~l~s-p~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fk 229 (741)
..|. ..+....+.+. +...+..++....+..|.+.++.+ ||+++
T Consensus 923 ~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ 980 (1201)
T PF12128_consen 923 ERFKGVLTKHSGSELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDVL--IPQQQ 980 (1201)
T ss_pred HHHHHHHHhccccchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHhh--hHHHH
Confidence 3333 22222111211 111234456677788888888877 55544
No 63
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.61 E-value=7.3e+02 Score=26.99 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc
Q 004619 114 RHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL--------KY 185 (741)
Q Consensus 114 ~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L--------~y 185 (741)
|.....|....+++.+=-..|++....|..|+++|-.=+=.--+=+-+=.+-=.|-++|..+.|.+.+.| +|
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 4455667777777777667788888899999999954211000011111112234566777777777777 57
Q ss_pred hhhHHHHHHhhC
Q 004619 186 FDELENIAASFY 197 (741)
Q Consensus 186 F~~Ld~itr~l~ 197 (741)
|-.+.--.+||.
T Consensus 151 FvDINiQN~KLE 162 (305)
T PF15290_consen 151 FVDINIQNKKLE 162 (305)
T ss_pred HhhhhhhHhHHH
Confidence 877776666654
No 64
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.40 E-value=5e+02 Score=22.59 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004619 116 YVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (741)
Q Consensus 116 y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (741)
-.++++...+...+=++.+-+--+.+++|..........+..|+..+.++=
T Consensus 8 i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~ 58 (89)
T PF00957_consen 8 IQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLK 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333444443333333344444455666777777777777777777766653
No 65
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.07 E-value=8.8e+02 Score=29.93 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHhccCCchhhHHhHHHHHHHHHHHHHHhhccccCCCccCh-
Q 004619 315 VQILEECHKLYCEQR----------LSLVKGIVQQRISEFSKKETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSSSEDI- 383 (741)
Q Consensus 315 ~slL~dc~~~Yf~~R----------~~LL~p~i~~~l~~~~~~~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~~~~~- 383 (741)
.+-+.++...+..+| -+|..|+++..+..--. -+|++. ..||..|||..+.|.
T Consensus 147 ~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns------~VrsnA----------a~lf~~~fP~~dpd~~ 210 (1005)
T KOG1949|consen 147 HSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNS------EVRSNA----------ALLFVEAFPIRDPDLH 210 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCch------hhhhhH----------HHHHHHhccCCCCCcc
Confidence 333555665666666 25666766655543211 134443 358999999876554
Q ss_pred -hchhhhHHHHHHHHHHhhccccccc--CCHHHHHHHH
Q 004619 384 -SSLAPLIDPLSTFLYDILRPKLIHE--TNVDLLCELV 418 (741)
Q Consensus 384 -~~l~~~le~Lc~~LYd~lRp~Ii~~--~~L~~Lcel~ 418 (741)
+.....++.=-..||+-||.-.+.+ .-+.-+|.+.
T Consensus 211 ~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 211 AEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5567778877788899888776644 3344455544
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.35 E-value=4.6e+02 Score=31.21 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 004619 114 RHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIA 193 (741)
Q Consensus 114 ~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 193 (741)
..|++.+....++...+-.+++..--.+..+...|..+.+.-..|.++++.|+.....++.+.+. .
T Consensus 444 ~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy--------------~ 509 (569)
T PRK04778 444 EDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY--------------A 509 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Q ss_pred HhhCCCCCccCCccHHHHHHHHHHHHHHhhhCCCCcCh
Q 004619 194 ASFYSPNMNVGNGNFFHLLKRLDECILYVEGNPQYAES 231 (741)
Q Consensus 194 r~l~sp~~~V~~~~F~~~L~~LD~ci~Fl~~hp~fkda 231 (741)
.++.+ .|..+=..+.++...| .+-+|+.|
T Consensus 510 nRfr~--------~~~~V~~~f~~Ae~lF-~~~~Y~~a 538 (569)
T PRK04778 510 NRYRS--------DNEEVAEALNEAERLF-REYDYKAA 538 (569)
T ss_pred hccCC--------CCHHHHHHHHHHHHHH-HhCChHHH
No 67
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=22.29 E-value=8.4e+02 Score=24.82 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=50.8
Q ss_pred hcChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 004619 88 LVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVI 167 (741)
Q Consensus 88 i~~~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~ 167 (741)
..+..+.+...+.-+.....+.-..|..|.+.+..-...-+.++.+...+.+.+..-..+......+...=.+..+.+..
T Consensus 91 ~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ 170 (236)
T PF09325_consen 91 FEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAEN 170 (236)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 33444455555555555555566667777777776666666666667777777776666665555442211333444444
Q ss_pred HHHHHHHHHHHHH
Q 004619 168 EKQRLIEFAEAVQ 180 (741)
Q Consensus 168 eq~~L~~~ae~I~ 180 (741)
+-..++.-.+.+.
T Consensus 171 ei~~~~~~~~~~~ 183 (236)
T PF09325_consen 171 EIEEAERRVEQAK 183 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 4333333333333
No 68
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=21.42 E-value=1.9e+03 Score=29.19 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=32.6
Q ss_pred hcChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004619 88 LVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAV 151 (741)
Q Consensus 88 i~~~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V 151 (741)
+.....|..-|......+.......|.....++.....+....-.+++.+...+..+.......
T Consensus 246 ~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (1353)
T TIGR02680 246 ERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEAL 309 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666555555555555555555555544444444444444444444333333
No 69
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=4.1e+02 Score=27.61 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=28.0
Q ss_pred ccCCchHHHHHH-HHHhhhhhcchhhhhHHHHHHHH
Q 004619 504 KTWYPPLEKTVS-CLSKLYQCLEQAVFTGLAQEAVE 538 (741)
Q Consensus 504 ~~wYPpl~ktL~-lLSkly~~v~~~VF~~LA~eaV~ 538 (741)
.+|--+.--.|. .||.+|.||+++||-.+-+|+.|
T Consensus 149 ktw~e~~~~sl~Nflst~~qc~p~pvi~~~~~e~ar 184 (241)
T KOG1333|consen 149 KTWIEIYYVSLHNFLSTLFQCMPVPVILNFDAECQR 184 (241)
T ss_pred hhhhHhhhhhHHhHHHHHHHcCCcceeehHHHHHhc
Confidence 456666666666 89999999999999888887744
No 70
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=21.25 E-value=1e+03 Score=25.37 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=34.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhhCC
Q 004619 148 HHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKLKYFDELENIAASFYS 198 (741)
Q Consensus 148 ~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~l~s 198 (741)
.-.|..++=.++... .+++++..++.++..+|.|.-+-+...|++..
T Consensus 165 lfd~~keni~l~lE~----~yre~~~~v~~E~K~~lDy~v~~e~~~rr~eq 211 (247)
T KOG3976|consen 165 LFDVSKENIALQLEA----TYREQLVRVAKEVKRRLDYWVETEASKRRLEQ 211 (247)
T ss_pred hhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444332 46788899999999999999999999998754
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.72 E-value=1e+03 Score=25.13 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 004619 131 LRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLV 166 (741)
Q Consensus 131 l~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll 166 (741)
-+|++..-+.+...........+.+..+|+.+..|.
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555554444444
No 72
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.67 E-value=9.7e+02 Score=24.96 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004619 109 TEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAEAVQSKL 183 (741)
Q Consensus 109 ~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 183 (741)
.+.+|..--..|......+...-..++.+-..+.+|......|.++-.++..+.++.-.....++.-...+..+|
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 334454444455555555555555556666666666666666666666666666555554444444444444333
No 73
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.59 E-value=7.4e+02 Score=29.50 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHHHhhhCCC
Q 004619 207 NFFHLLKRLDECILYVEGNPQ 227 (741)
Q Consensus 207 ~F~~~L~~LD~ci~Fl~~hp~ 227 (741)
++..+++.+..=+++|+.||+
T Consensus 508 ~l~~~~r~lr~l~~~L~~~P~ 528 (547)
T PRK10807 508 RLDQVLRELQPVLKTLNEKSN 528 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 456677888888889999996
No 74
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=20.48 E-value=9.7e+02 Score=28.91 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=52.0
Q ss_pred hhhhhcChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004619 84 IEAVLVNTNQFYNWFTDLELAMKSETEEKYRHYVNTLMGRIQTCDDILRQVDGTLDLFNELQLQHHAVATKTKTLHDACD 163 (741)
Q Consensus 84 ~~~~i~~~~~F~~w~~~~e~~~~~~~~~~y~~y~~~L~~~~~~~d~ll~~~~~~l~~l~~L~~~~~~V~~kT~~l~~~ce 163 (741)
+...+....+|++=|..+-+.+. .-...++.|-..-+.+.+.++.-..+...+.++++.|+.+-+
T Consensus 26 E~~~l~~~~~~L~~f~~v~~~l~---------------~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~ 90 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFSPVNRQLK---------------RLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKE 90 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666555432 222223333333333333444445666667777777777766
Q ss_pred HHHHHHHHHHHHHH----------HHHh-----cccchhhHHHHHH
Q 004619 164 RLVIEKQRLIEFAE----------AVQS-----KLKYFDELENIAA 194 (741)
Q Consensus 164 ~Ll~eq~~L~~~ae----------~I~~-----~L~yF~~Ld~itr 194 (741)
.+-..+.-|..+-+ .+.. .=.||+.|+++.+
T Consensus 91 ~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~ 136 (618)
T PF06419_consen 91 ELELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQK 136 (618)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 66666655554432 2222 2568888887765
No 75
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.16 E-value=6.4e+02 Score=27.97 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=28.4
Q ss_pred hhhhcChHHHHH-HHHHHHHHHhhhhH-HHHH----HHHHHHHHHHHHHHHHH
Q 004619 85 EAVLVNTNQFYN-WFTDLELAMKSETE-EKYR----HYVNTLMGRIQTCDDIL 131 (741)
Q Consensus 85 ~~~i~~~~~F~~-w~~~~e~~~~~~~~-~~y~----~y~~~L~~~~~~~d~ll 131 (741)
..++.+..+|++ |....|+.....-. ++|. ..++..-..+.+.+.+.
T Consensus 224 g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe~~ 276 (320)
T TIGR01834 224 GKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQEIV 276 (320)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999 88887776554333 2343 34444444444444444
No 76
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=76 Score=34.88 Aligned_cols=69 Identities=30% Similarity=0.522 Sum_probs=52.9
Q ss_pred HhHHHHHHHHHHHHHHhhccccCCCccChhchhhhH---HHHHHHHHHhhc---ccccccCCHHHHH--------HHHHH
Q 004619 355 RSGCAYLMQVCQLEHQLFDHFFPSSSEDISSLAPLI---DPLSTFLYDILR---PKLIHETNVDLLC--------ELVDI 420 (741)
Q Consensus 355 r~~~~~l~~~C~~E~~Lf~~FF~~~~~~~~~l~~~l---e~Lc~~LYd~lR---p~Ii~~~~L~~Lc--------el~~i 420 (741)
-+|.+||-....-|.+ ..||+.+++| -...|| |.|...|+..-| |.||-++.|+.|| |..--
T Consensus 176 GTGKSYLAKAVATEAn--STFFSvSSSD--LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRR 251 (439)
T KOG0739|consen 176 GTGKSYLAKAVATEAN--STFFSVSSSD--LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRR 251 (439)
T ss_pred CCcHHHHHHHHHhhcC--CceEEeehHH--HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHH
Confidence 5788999999999999 8999887533 455565 577788888876 8899999999998 44555
Q ss_pred HHHHHhh
Q 004619 421 LKVEVLG 427 (741)
Q Consensus 421 L~~e~l~ 427 (741)
++.|++.
T Consensus 252 IKTEfLV 258 (439)
T KOG0739|consen 252 IKTEFLV 258 (439)
T ss_pred HHHHHHH
Confidence 6666653
Done!