Query 004619
Match_columns 741
No_of_seqs 174 out of 209
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:46:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004619.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1919-1923//hhsearch_pdb/004619hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b1e_A Exocyst complex compone 1.0 1 1 31.3 25.5 186 172-379 5-205 (564)
2 2pft_A Exocytosis protein; hel 1.0 1 1 26.1 28.3 178 182-379 5-225 (571)
3 1u4q_A Spectrin alpha chain, b 1.0 1 1 19.9 11.2 18 91-108 12-29 (322)
4 1s35_A Beta-I spectrin, spectr 1.0 1 1 17.8 9.9 19 90-108 8-26 (214)
5 3fb2_A Spectrin alpha chain, b 1.0 1 1 14.7 10.4 17 91-107 22-38 (218)
6 2xs1_A Programmed cell death 6 1.0 1 1 14.7 10.1 21 707-727 681-701 (704)
7 1u5p_A Spectrin alpha chain, b 1.0 1 1 13.9 8.8 17 91-107 12-28 (216)
8 1k8k_E P21, ARP2/3 complex 21 1.0 1 1 13.6 0.4 44 212-260 39-82 (178)
9 3dwl_E Actin-related protein 2 1.0 1 1 13.6 0.6 48 211-263 40-87 (174)
10 3vmx_A Voltage-gated hydrogen 1.0 1 1 13.4 6.9 41 137-177 2-42 (48)
No 1
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=1.00 E-value=1 Score=31.34 Aligned_cols=186 Identities=17% Similarity=0.158 Sum_probs=108.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999997213142458999986079987657840899899999998985619----7886708999999999999999
Q 004619 172 LIEFAEAVQSKLKYFDELENIAASFYSPNMNVGNGNFFHLLKRLDECILYVEGN----PQYAESSVYLLKFRQLQSRALG 247 (741)
Q Consensus 172 L~~~ae~I~~~L~yF~~Le~itr~L~sp~~~V~~~~F~~~L~~lD~cl~Fl~~h----p~fkda~~Y~~rfkqlltRAl~ 247 (741)
.+..-+.|.+-+.||+.....-..+..+-..++-+.|...|.+|++++.||+.| +++|+.+-=+.+++.++.+++.
T Consensus 5 Id~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~~ 84 (564)
T 2b1e_A 5 IESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEA 84 (564)
T ss_dssp ---CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999989988889999986498624689999999999999999985487750234467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 9999999999998999999--99833899887775314666699999989858799999995117258868999999999
Q 004619 248 MIRSHVLSVLKSASSQVQA--AIRSSGGSKTSVSEGVEASLIYVRFKAAASELKPVLEEIESRSSKKEYVQILEECHKLY 325 (741)
Q Consensus 248 LIr~~~~~~L~~~~~~v~~--~l~~~~~~~~~~s~~~~~aLlY~kF~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Y 325 (741)
-+..+|.+.|+. +.-+.. -+... ..-+.++ .+....++.+...+.... ...+|.+.|
T Consensus 85 ~L~~~F~~lL~~-s~p~~p~~~i~k~-~p~p~l~------------~~~l~~L~~Ia~~m~~~g-------~~~~~~~iY 143 (564)
T 2b1e_A 85 QLRVYFISILNS-IKPFDPQINITKK-MPFPYYE------------DQQLGALSWILDYFHGNS-------EGSIIQDIL 143 (564)
T ss_dssp HHHHHHHHHHTT-SCCCCHHHHHHHT-CCCCCCC------------HHHHHHHHHHHHHHHHTT-------CHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCCHHHHHCCC-CCCCCCC------------HHHHHHHHHHHHHHHHCC-------CCHHHHHHH
T ss_conf 999999999972-7899878861367-8888889------------899999999999998658-------843899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC---C------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999955456989999997860---2------87046688688999999999997210006898
Q 004619 326 CEQRLSLVKGIVQQRISEFSK---K------ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPSS 379 (741)
Q Consensus 326 f~~R~~LL~p~i~~~l~e~~~---~------~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~~ 379 (741)
...|...+...+.. +....+ + +....-+..-..-+..+.+.|+.|..+.|+..
T Consensus 144 ~~~R~~~l~~sL~~-L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L~~~vf~~~ 205 (564)
T 2b1e_A 144 VGERSKLILKCMAF-LEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQY 205 (564)
T ss_dssp HHHHHHHHHHHHTT-TSTTCC------------CCSTHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999997-430201314556775565131899999999999999999999980875
No 2
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=1.00 E-value=1 Score=26.14 Aligned_cols=178 Identities=13% Similarity=0.187 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1314245899998607-998765784089989999999898561978867089999999999999999999999999998
Q 004619 182 KLKYFDELENIAASFY-SPNMNVGNGNFFHLLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (741)
Q Consensus 182 ~L~yF~~Le~itr~L~-sp~~~V~~~~F~~~L~~lD~cl~Fl~~hp~fkda~~Y~~rfkqlltRAl~LIr~~~~~~L~~~ 260 (741)
-+.||+.....-+.+. .|. .+-+.|...+.+|.+.+.||..|+- ++ ..+.|.+.++..||.-+..-|...|..-
T Consensus 5 v~~~~d~~~~~e~~i~~gp~--~~l~~yL~av~~l~~a~~~~~~~~~--~s-~~l~~~~~Ll~~a~~~Le~eF~~lL~~~ 79 (571)
T 2pft_A 5 VISYYHVASDTEKIIREGPT--GRLEEYLGSMAKIQKAVEYFQDNSP--DS-PELNKVKLLFERGKESLESEFRSLMTRH 79 (571)
T ss_dssp TSTHHHHHHHHHHHHHHCCT--TCHHHHHHHHHHHHHHHHHHHHHST--TC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHCCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99987153056656634967--3499999999999999999873699--73-8999999999999999999999999966
Q ss_pred HHHH-----HHHHHHCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999-----999983389988777531466669999-9989858799999995117258868999999999999955456
Q 004619 261 SSQV-----QAAIRSSGGSKTSVSEGVEASLIYVRF-KAAASELKPVLEEIESRSSKKEYVQILEECHKLYCEQRLSLVK 334 (741)
Q Consensus 261 ~~~v-----~~~l~~~~~~~~~~s~~~~~aLlY~kF-~~~a~~lk~Li~eie~R~~~~Ey~slL~dc~~~Yf~~R~~LL~ 334 (741)
+..+ ...+..... . .+.+ ... +..+ ....+.++.+...+..+.. ..+|.+.|...|...+.
T Consensus 80 ~~~~~p~~ll~~~~~~~~-~--~~~~--~~~-~~~~~~~~~~~L~~Ia~~m~~~g~-------~~~~~~~Y~~~R~~~l~ 146 (571)
T 2pft_A 80 SKVVSPVLLLDLISADDE-L--EVQE--DVV-LEHLPESVLRDVVRISRWLVEYGR-------NQDFMNVYYQIRSSQLD 146 (571)
T ss_dssp CCCCCHHHHHHHHHHTCC-C--C-----------SSCHHHHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCC-C--CCCC--CCC-CCCCCHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHH
T ss_conf 968884888740566556-6--7555--666-567999999999999999988487-------36999999999999999
Q ss_pred HHHHHHHHHHH-----------------------CC-------------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98999999786-----------------------02-------------8704668868899999999999721000689
Q 004619 335 GIVQQRISEFS-----------------------KK-------------ETLPSLTRSGCAYLMQVCQLEHQLFDHFFPS 378 (741)
Q Consensus 335 p~i~~~l~e~~-----------------------~~-------------~~l~~l~r~~~~~l~~~C~~E~~Lf~~FF~~ 378 (741)
..+. .+.... .. .++-..++.. ..++++...|++|..+.|+.
T Consensus 147 ~sL~-~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~wi~~~-~~~~~l~~~Er~L~~~vf~~ 224 (571)
T 2pft_A 147 RSIK-GLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCV-SAFVKLAQSEYRLLMEIIPE 224 (571)
T ss_dssp HHHH-HHHHHHHHC---------------------------------CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCH
T ss_pred HHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC
T ss_conf 9999-999877402434332223100334456300121013650677887788999999-99999999999999987386
Q ss_pred C
Q ss_conf 8
Q 004619 379 S 379 (741)
Q Consensus 379 ~ 379 (741)
.
T Consensus 225 ~ 225 (571)
T 2pft_A 225 H 225 (571)
T ss_dssp H
T ss_pred C
T ss_conf 2
No 3
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=1.00 E-value=1 Score=19.94 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 488898899999997221
Q 004619 91 TNQFYNWFTDLELAMKSE 108 (741)
Q Consensus 91 ~~~f~~w~~~~~~~~~~~ 108 (741)
..++..|....+..+.+.
T Consensus 12 ~~~l~~Wl~~~e~~l~~~ 29 (322)
T 1u4q_A 12 IKDFDFWLSEVEALLASE 29 (322)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999976387
No 4
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=1.00 E-value=1 Score=17.82 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 8488898899999997221
Q 004619 90 NTNQFYNWFTDLELAMKSE 108 (741)
Q Consensus 90 ~~~~f~~w~~~~~~~~~~~ 108 (741)
...+|..|....+..+.+.
T Consensus 8 ~~~~l~~Wl~~~~~~l~~~ 26 (214)
T 1s35_A 8 DLDDFQAWLSITQKAVASE 26 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999998488
No 5
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.73 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 48889889999999722
Q 004619 91 TNQFYNWFTDLELAMKS 107 (741)
Q Consensus 91 ~~~f~~w~~~~~~~~~~ 107 (741)
..++..|....+..+.+
T Consensus 22 ~~~l~~Wl~~~~~~l~~ 38 (218)
T 3fb2_A 22 FRDLMSWINGIRGLVSS 38 (218)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999999808
No 6
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=1.00 E-value=1 Score=14.65 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=10.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHC
Q ss_conf 999999852278999999631
Q 004619 707 KVNAAIQQELPPVMAKMKLYL 727 (741)
Q Consensus 707 ~~~~~i~~~lp~~~~~m~lYL 727 (741)
+||..+...+-.++....-|+
T Consensus 681 ~FY~~L~~~~~~~~~~~~df~ 701 (704)
T 2xs1_A 681 KFYNELTEILVRFQNKCSDIV 701 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999997
No 7
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=1.00 E-value=1 Score=13.93 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 48889889999999722
Q 004619 91 TNQFYNWFTDLELAMKS 107 (741)
Q Consensus 91 ~~~f~~w~~~~~~~~~~ 107 (741)
..++..|....+..+.+
T Consensus 12 ~~~l~~Wl~~~e~~l~~ 28 (216)
T 1u5p_A 12 IKDFDFWLSEVEALLAS 28 (216)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998549
No 8
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=1.00 E-value=1 Score=13.57 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999898561978867089999999999999999999999999998
Q 004619 212 LKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSA 260 (741)
Q Consensus 212 L~~lD~cl~Fl~~hp~fkda~~Y~~rfkqlltRAl~LIr~~~~~~L~~~ 260 (741)
-..|||+|.||..|.=||..++ |----|.|-.+--|+...|+.+
T Consensus 39 ~DIiDEal~~FraNvfFrnfeI-----kg~ADR~LIYltlyi~eCLkkl 82 (178)
T 1k8k_E 39 TDIVDEAIYYFKANVFFKNYEI-----KNEADRTLIYITLYISECLKKL 82 (178)
T ss_dssp CCHHHHHHHHHHHHTTCSCCCC-----CSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCC-----CCCCCEEEEEHHHHHHHHHHHH
T ss_conf 5649999999886255412656-----8977657521999999999986
No 9
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=13.57 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999898561978867089999999999999999999999999998999
Q 004619 211 LLKRLDECILYVEGNPQYAESSVYLLKFRQLQSRALGMIRSHVLSVLKSASSQ 263 (741)
Q Consensus 211 ~L~~lD~cl~Fl~~hp~fkda~~Y~~rfkqlltRAl~LIr~~~~~~L~~~~~~ 263 (741)
--..|||+|.||..|.=||..++ +----|.|-.+-.|+...|+.+..-
T Consensus 40 ~~DIiDEal~~FrANvfFrnfeI-----kg~ADR~LIYltlyi~~CLkkl~~~ 87 (174)
T 3dwl_E 40 QMDIIDECIGLFRANCFFRNFEI-----KGPADRTLIYGTLFISECLGRVNGL 87 (174)
T ss_dssp ----CHHHHHHHHHHTTCCCC----------CTHHHHHHHHHHHSCC------
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC-----CCCCCEEEEHHHHHHHHHHHHHHCC
T ss_conf 76749999999986265522656-----8977656300999999999987446
No 10
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=1.00 E-value=1 Score=13.36 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999975246999999999999999999999
Q 004619 137 TLDLFNELQLQHHAVATKTKTLHDACDRLVIEKQRLIEFAE 177 (741)
Q Consensus 137 ~l~~l~~L~~~~~~V~~kT~~l~~~ce~Ll~eq~~L~~~ae 177 (741)
+...+..|...+..+..+...|...|..+-.|-.||..+-.
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 48789999998999999999999983299999999999999
Done!