Query 004620
Match_columns 741
No_of_seqs 187 out of 961
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 18:02:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004620.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1919-1923//hhsearch_pdb/004620hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g9p_A 4-hydroxy-3-methylbut-2 1.0 1 1 1001.3 30.1 363 82-733 2-399 (406)
2 3noy_A 4-hydroxy-3-methylbut-2 1.0 1 1 997.3 32.1 349 82-733 10-361 (366)
3 4g9p_A 4-hydroxy-3-methylbut-2 1.0 1 1 146.5 7.3 75 538-622 197-271 (406)
4 3noy_A 4-hydroxy-3-methylbut-2 1.0 1 1 137.7 7.4 76 537-622 177-252 (366)
5 1zco_A 2-dehydro-3-deoxyphosph 1.0 1 1 101.3 15.9 178 87-321 9-207 (262)
6 4g38_A SIR-HP, sirhp, sulfite 1.0 1 1 84.2 7.1 126 606-733 386-540 (570)
7 1aop_A Sirhp, sulfite reductas 1.0 1 1 74.6 6.4 125 606-732 313-466 (497)
8 3nvt_A 3-deoxy-D-arabino-heptu 1.0 1 1 72.4 13.2 173 89-315 129-320 (385)
9 1zj8_A Probable ferredoxin-dep 1.0 1 1 69.7 7.3 107 625-732 404-544 (566)
10 2akj_A Ferredoxin--nitrite red 1.0 1 1 51.9 8.2 95 638-733 480-599 (608)
No 1
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=1.00 E-value=1 Score=1001.35 Aligned_cols=363 Identities=35% Similarity=0.589 Sum_probs=330.5
Q ss_pred CCCCCCCEEEEECEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24677720699700102899964887505899889899899999999849999998439988899999999860038866
Q 004620 82 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN 161 (741)
Q Consensus 82 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~~~~ 161 (741)
++.||+||+|+||+|+|||+|||+|||||||+|.|+++|++||.+|++|||||||+|||++++|+||++|+++|++.+++
T Consensus 2 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~ 81 (406)
T 4g9p_A 2 EGMRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVE 81 (406)
T ss_dssp CCCCCCCCCEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCEEEEECCEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 97774672699859745799940056468998600999999999999869998999119999998499999999746887
Q ss_pred CCEEECCCCCHHHHHHHH----HHCCCEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 542415688878999983----3229355279987710000001334608999987768874999999999649909995
Q 004620 162 IPLVADIHFAPSVALRVA----ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 162 iPLVADIHF~~~~Al~a~----~~v~KiRINPGNi~~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~aIRIG 237 (741)
+||||||||||++||.++ +++||+||||||||+++++ +++|.++|++||++++|||||
T Consensus 82 vPLVADiHF~~~~al~a~~~~a~~~dkiRINPGNig~~~k~------------------~e~~~~vv~~ak~~~~pIRIG 143 (406)
T 4g9p_A 82 VPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGRHK------------------DEHFAEMIRIAMDLGKPVRIG 143 (406)
T ss_dssp CCEEEECCSSHHHHHHHCHHHHHHCSEEEECTTSSCSTHHH------------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH------------------HHHHHHHHHHHHHCCCCCEEC
T ss_conf 75476404468999999999986776424684335765317------------------899999999998704783213
Q ss_pred ECCCCCCHHHHHHCCC------CC--------HHHHHHHHHHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 1158876778865099------91--------6899999999999997999--816999813996699999999999761
Q 004620 238 TNHGSLSDRIMSYYGD------SP--------RGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMY 301 (741)
Q Consensus 238 vN~GSL~~~il~~yg~------tp--------~~mVeSAle~~~i~e~~~F--~diviS~KaSnv~~~i~Ayrlla~~m~ 301 (741)
||||||+++++++||| +| ++|||||++|+++|+++|| +||+||+|+|||++||+|||+|+++
T Consensus 144 VN~GSL~~~ll~k~~d~~~~~~~p~~~~~v~~eamVeSAl~~~~~~~~~~f~~~~iviS~KaSdv~~~i~aYr~la~~-- 221 (406)
T 4g9p_A 144 ANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARR-- 221 (406)
T ss_dssp EEGGGCCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEECSSHHHHHHHHHHHHHH--
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHHHHH--
T ss_conf 354533699999740402467886310254899999999999999997289703468975449899999999999972--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCC
Q ss_conf 07887563101246689999802448999998542899635784578874552379999984565543106872001001
Q 004620 302 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKH 381 (741)
Q Consensus 302 ~~g~dyPLHLGVTEAG~~~~G~IKSaiGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~Ll~~~~~~~~~~~~~~~~~~~~ 381 (741)
+||||||||||||++.+|+||||+|||+||.||||||||||||+||++...
T Consensus 222 ---~dyPLHLGvTEAG~~~~G~IKSaigiG~LL~~GIGDTIRVSLT~dP~e~~~-------------------------- 272 (406)
T 4g9p_A 222 ---TQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRT-------------------------- 272 (406)
T ss_dssp ---CCSCBEECCTTCBSHHHHHHHHHHHHHHHHHTTCCSEEECCBCCCTTSCTT--------------------------
T ss_pred ---CCCCCEEEEECCCCCCCCEECHHHHHHHHHHCCCCHHEEEECCCCCCCCCH--------------------------
T ss_conf ---798816514147986563221577788898626745279614689876517--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 33100001247777545687433244344587300101200012146787876766760788666554202220379997
Q 004620 382 RHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSV 461 (741)
Q Consensus 382 ~~~~~~~rr~~~~~~~~~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~ 461 (741)
T Consensus 273 -------------------------------------------------------------------------------- 272 (406)
T 4g9p_A 273 -------------------------------------------------------------------------------- 272 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCEE
Q ss_conf 70467999888751124312344322369976201455554420022355765630477205998778998742289669
Q 004620 462 DDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATM 541 (741)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~l~~l~~~~~vv 541 (741)
T Consensus 273 -------------------------------------------------------------------------------- 272 (406)
T 4g9p_A 273 -------------------------------------------------------------------------------- 272 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 99407888875522689999999998558998757710356777776326688998877733048785885289997244
Q 004620 542 ILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDF 621 (741)
Q Consensus 542 i~l~~~~~s~~~~~v~~~R~l~~~l~~~g~~~Pvi~hlgvteag~~e~~~IkSa~~iG~LL~DGiGDtIrIsl~~~p~~e 621 (741)
+|
T Consensus 273 ------------------------------------------------------------------------------~E 274 (406)
T 4g9p_A 273 ------------------------------------------------------------------------------KE 274 (406)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
T ss_conf ------------------------------------------------------------------------------79
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHH-HHHHHHH-----------HHCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 468799999983203686334328888666435899-9999999-----------8459999289986114439998788
Q 004620 622 LRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQE-ISAEIRE-----------KTSHLPGVSIAIMGCIVNGPGEMAD 689 (741)
Q Consensus 622 i~~va~~ILQa~rlR~~kte~ISCPsCGRTlfDLq~-~~~~Ik~-----------~t~hLkgvkIAVMGCIVNGPGEmad 689 (741)
+ +++|+|||++++|.+++++|||||||||.||++. ++++|++ ++.|+++++||||||||||||||+|
T Consensus 275 V-~va~~ILqslglR~~~~~iiSCPtCGRt~~d~~~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCvVNGPGEa~~ 353 (406)
T 4g9p_A 275 V-EVAQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKH 353 (406)
T ss_dssp H-HHHHHHHHHTTSCCCSCEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESSTTTHHHHHHH
T ss_pred H-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
T ss_conf 9-999999998288656887666998886864189999999999875300445540689878779998972037520343
Q ss_pred CCEEEECC---CCCEEEEEECCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 86055438---895067553655455358823799999999996066
Q 004620 690 ADFGYVGG---APGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGR 733 (741)
Q Consensus 690 AD~GyvGg---~pgki~Ly~gke~V~~~Ipeeeavd~Li~lIk~~g~ 733 (741)
|||||+|+ +.++..+|+++++++ ++|+++++|+|+++|+++-+
T Consensus 354 ADiGi~~~G~G~~~~~~lf~~G~~~~-~v~~~~iv~~l~~~i~~~~~ 399 (406)
T 4g9p_A 354 AHIGISLPGAGEEPKAPVYADGKLLT-ILKGEGIAEEFLRLVEDYVK 399 (406)
T ss_dssp SSEEEECCCTTSCSEEEEEETTEEEE-EEESSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEECCEEEE-ECCHHHHHHHHHHHHHHHHH
T ss_conf 48373458889988034897998977-65888999999999999999
No 2
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=1.00 E-value=1 Score=997.25 Aligned_cols=349 Identities=39% Similarity=0.659 Sum_probs=336.6
Q ss_pred CCCCCCCEEEEECEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24677720699700102899964887505899889899899999999849999998439988899999999860038866
Q 004620 82 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN 161 (741)
Q Consensus 82 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~~~~ 161 (741)
.++||+||+|+||+|+|||++||+|||||||+|.|+++|++||.+|+++||||||+|||++++|++++.|+++ ++
T Consensus 10 ~~~rr~tr~v~VG~v~IGG~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~-----~~ 84 (366)
T 3noy_A 10 MIQKRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKK-----SP 84 (366)
T ss_dssp CCCCCCCCCEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHH-----CS
T ss_pred CEEECCCEEEEECCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC-----CC
T ss_conf 0152051689999988769996799984189986999999999999986999999478996999999999964-----99
Q ss_pred CCEEECCCCCHHHHHHHHHH-CCCEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 54241568887899998332-29355279987710000001334608999987768874999999999649909995115
Q 004620 162 IPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240 (741)
Q Consensus 162 iPLVADIHF~~~~Al~a~~~-v~KiRINPGNi~~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~aIRIGvN~ 240 (741)
+||||||||||++|++|+++ +||+|||||||++.+ +|+++|++||++|+||||||||
T Consensus 85 vPlvaDiHf~~~lal~a~e~G~dklRINPGNig~~~----------------------~~~~vv~~ak~~~~piRIGvN~ 142 (366)
T 3noy_A 85 MPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEE----------------------IVREIVEEAKRRGVAVRIGVNS 142 (366)
T ss_dssp SCEEEECCSCHHHHHHHHHTTCSEEEECHHHHSCHH----------------------HHHHHHHHHHHHTCEEEEEEEG
T ss_pred CCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCHH----------------------HHHHHHHHHHHCCCCEEEECCC
T ss_conf 988996778889999999808986998984468655----------------------8999999999849988996188
Q ss_pred CCCCHHHHHHCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 887677886509-9916899999999999997999816999813996699999999999761078875631012466899
Q 004620 241 GSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEG 319 (741)
Q Consensus 241 GSL~~~il~~yg-~tp~~mVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~ 319 (741)
|||+++++++|| +||++|||||++++++|+++||+||++|+|+|||.+||+|||+|+++ +||||||||||||++
T Consensus 143 GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S~v~~~i~ayr~la~~-----~dyPLHlGvTEAG~~ 217 (366)
T 3noy_A 143 GSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGSDVLQNVRANLIFAER-----TDVPLHIGITEAGMG 217 (366)
T ss_dssp GGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHH-----CCCCEEECCSSCCSH
T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHC-----CCCCEEECCCCCCCC
T ss_conf 677799998638999899999999999999858998499963168807999999999862-----598879706788877
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99802448999998542899635784578874552379999984565543106872001001331000012477775456
Q 004620 320 EDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKE 399 (741)
Q Consensus 320 ~~G~IKSaiGiG~LL~dGIGDTIRVSLT~dP~~EV~va~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~ 399 (741)
++|+||||+|||+||.||||||||||||+||++||++|
T Consensus 218 ~~G~ikSsigiG~LL~dGIGDTIRVSLt~~p~~Ev~va------------------------------------------ 255 (366)
T 3noy_A 218 TKGIIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETA------------------------------------------ 255 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEECCCCSSCHHHHHHHH------------------------------------------
T ss_pred CCEEEEHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH------------------------------------------
T ss_conf 55056328877899873165559996798827789999------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 87433244344587300101200012146787876766760788666554202220379997704679998887511243
Q 004620 400 GEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMG 479 (741)
Q Consensus 400 g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 479 (741)
T Consensus 256 -------------------------------------------------------------------------------- 255 (366)
T 3noy_A 256 -------------------------------------------------------------------------------- 255 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH
Q ss_conf 12344322369976201455554420022355765630477205998778998742289669994078888755226899
Q 004620 480 VITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAA 559 (741)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~ 559 (741)
T Consensus 256 -------------------------------------------------------------------------------- 255 (366)
T 3noy_A 256 -------------------------------------------------------------------------------- 255 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998558998757710356777776326688998877733048785885289997244468799999983203686
Q 004620 560 RRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTK 639 (741)
Q Consensus 560 R~l~~~l~~~g~~~Pvi~hlgvteag~~e~~~IkSa~~iG~LL~DGiGDtIrIsl~~~p~~ei~~va~~ILQa~rlR~~k 639 (741)
|+|||++|+|.++
T Consensus 256 -------------------------------------------------------------------~~ILqslglR~~g 268 (366)
T 3noy_A 256 -------------------------------------------------------------------YEILKSLGLRRRG 268 (366)
T ss_dssp -------------------------------------------------------------------HHHHHHTTSCCSS
T ss_pred -------------------------------------------------------------------HHHHHHCCCCCCC
T ss_conf -------------------------------------------------------------------9999963877689
Q ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEEEEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCEEEEECCCHH
Q ss_conf 3343288886664358999999999845999-928998611443999878886055438895067553655455358823
Q 004620 640 TEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAME 718 (741)
Q Consensus 640 te~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pgki~Ly~gke~V~~~Ipee 718 (741)
+|||||||||||+||+|+++++|++++.|+| |+|||||||||||||||+||||||+|| +|++.+|++|++|+ ++|++
T Consensus 269 ~~~ISCPtCGRt~~dl~~~~~~ie~~l~~~~~~lkVAVMGCvVNGPGEa~~ADiGiagg-~~~~~lf~~Ge~v~-~v~~~ 346 (366)
T 3noy_A 269 VEIVACPTCGRIEVDLPKVVKEVQEKLSGVKTPLKVAVMGCVVNAIGEAREADIGLACG-RGFAWLFKHGKPIK-KVDES 346 (366)
T ss_dssp CEEEECCCCTTCCSCHHHHHHHHHHHTTTCCSCCEEEEESSSHHHHHHTTTCSEEEEEC-SSEEEEEETTEEEE-EEESC
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCEEEECC-CCCEEEEECCEEEE-ECCHH
T ss_conf 87998989888630399999999999847999977999764026874154477837458-88658998898954-22888
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 799999999996066
Q 004620 719 QATDALIQLIKDHGR 733 (741)
Q Consensus 719 eavd~Li~lIk~~g~ 733 (741)
+++|+|+++|+++..
T Consensus 347 ~~~~~l~~~I~~~~~ 361 (366)
T 3noy_A 347 EMVDELLKEIQNMEK 361 (366)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 3
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=1.00 E-value=1 Score=146.49 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=69.7
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 96699940788887552268999999999855899875771035677777632668899887773304878588528999
Q 004620 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~g~~~Pvi~hlgvteag~~e~~~IkSa~~iG~LL~DGiGDtIrIsl~~~ 617 (741)
+++++|+| +|+...++.+||+|.++ ++||| |||+||||.+.+|+|||++++|+||+|||||||||||+++
T Consensus 197 ~~iviS~K---aSdv~~~i~aYr~la~~-----~dyPL--HLGvTEAG~~~~G~IKSaigiG~LL~~GIGDTIRVSLT~d 266 (406)
T 4g9p_A 197 DKLVLSAK---VSKARDLVWVYRELARR-----TQAPL--HLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPS 266 (406)
T ss_dssp GGEEEEEE---CSSHHHHHHHHHHHHHH-----CCSCB--EECCTTCBSHHHHHHHHHHHHHHHHHTTCCSEEECCBCCC
T ss_pred HHEEEEEE---CCCHHHHHHHHHHHHHH-----CCCCC--EEEEECCCCCCCCEECHHHHHHHHHHCCCCHHEEEECCCC
T ss_conf 34689754---49899999999999972-----79881--6514147986563221577788898626745279614689
Q ss_pred CHHHH
Q ss_conf 72444
Q 004620 618 DFDFL 622 (741)
Q Consensus 618 p~~ei 622 (741)
|.+..
T Consensus 267 P~e~~ 271 (406)
T 4g9p_A 267 PKEPR 271 (406)
T ss_dssp TTSCT
T ss_pred CCCCC
T ss_conf 87651
No 4
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=1.00 E-value=1 Score=137.66 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 89669994078888755226899999999985589987577103567777763266889988777330487858852899
Q 004620 537 IDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPG 616 (741)
Q Consensus 537 ~~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~g~~~Pvi~hlgvteag~~e~~~IkSa~~iG~LL~DGiGDtIrIsl~~ 616 (741)
.+++++|+| +|+...++.+||+|.++ ++||+ |+|+||||.+++|.|||++++|+||+||||||||||+++
T Consensus 177 f~~iviS~K---~S~v~~~i~ayr~la~~-----~dyPL--HlGvTEAG~~~~G~ikSsigiG~LL~dGIGDTIRVSLt~ 246 (366)
T 3noy_A 177 FTNYKVSIK---GSDVLQNVRANLIFAER-----TDVPL--HIGITEAGMGTKGIIKSSVGIGILLYMGIGDTVRVSLTD 246 (366)
T ss_dssp CCCEEEEEE---CSSHHHHHHHHHHHHHH-----CCCCE--EECCSSCCSHHHHHHHHHHHHHHHHHTTCCSEECCCCSS
T ss_pred CCEEEEEEE---CCCHHHHHHHHHHHHHC-----CCCCE--EECCCCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 984999631---68807999999999862-----59887--970678887755056328877899873165559996798
Q ss_pred CCHHHH
Q ss_conf 972444
Q 004620 617 QDFDFL 622 (741)
Q Consensus 617 ~p~~ei 622 (741)
+|++|+
T Consensus 247 ~p~~Ev 252 (366)
T 3noy_A 247 DPVVEV 252 (366)
T ss_dssp CHHHHH
T ss_pred CCHHHH
T ss_conf 827789
No 5
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=101.26 Aligned_cols=178 Identities=14% Similarity=0.147 Sum_probs=139.9
Q ss_pred CCEEEEECEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC------------HHHHHHHHHHHHH
Q ss_conf 7206997001028999648875058998898998999999998499999984399------------8889999999986
Q 004620 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG------------KREADACFEIKNS 154 (741)
Q Consensus 87 ~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtvp~------------~~~A~al~~I~~~ 154 (741)
+++.|.||++.||++ |+.|+.+ ....|.+...+.+.+++++||++||+.... .+..+.+.+++++
T Consensus 9 ~~~~i~i~~~~iG~~-~~vIAgp--c~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~ 85 (262)
T 1zco_A 9 EKTVVKINDVKFGEG-FTIIAGP--CSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADE 85 (262)
T ss_dssp SCCCEEETTEEETSS-CEEEEEC--SBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHH
T ss_pred CCCEEEECCEEECCC-CEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 996699899998898-4899917--9788999999999999985999899973545888534468659999999999997
Q ss_pred HCCCCCCCCEEECCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 00388665424156888789999833229355279987710000001334608999987768874999999999649909
Q 004620 155 LVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 155 L~~~~~~iPLVADIHF~~~~Al~a~~~v~KiRINPGNi~~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~aI 234 (741)
..+|++.++|....+.+ +++.++.+.|+++|+.+. ++++.+-+.++||
T Consensus 86 -----~Gl~~~te~~d~~~~~~-l~~~vd~~kIga~~~~n~--------------------------~ll~~~a~~~kPV 133 (262)
T 1zco_A 86 -----YGLVTVTEVMDTRHVEL-VAKYSDILQIGARNSQNF--------------------------ELLKEVGKVENPV 133 (262)
T ss_dssp -----HTCEEEEECCCGGGHHH-HHHHCSEEEECGGGTTCH--------------------------HHHHHHTTSSSCE
T ss_pred -----CCCCEEEEECCHHHHHH-HHHHCCEEEECCCCCCCH--------------------------HHHHHHHHCCCCE
T ss_conf -----39938995287776999-996399899991003699--------------------------9999999629958
Q ss_pred EEEECCCCCCHHHHHHCC-C-CCHHHHHHHHHHHHHHHHCCCCCEEEEE-------ECCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 995115887677886509-9-9168999999999999979998169998-------139966999999999997610788
Q 004620 235 RIGTNHGSLSDRIMSYYG-D-SPRGMVESAFEFARICRKLDFHNFLFSM-------KASNPVVMVQAYRLLVAEMYVHGW 305 (741)
Q Consensus 235 RIGvN~GSL~~~il~~yg-~-tp~~mVeSAle~~~i~e~~~F~diviS~-------KaSnv~~~i~Ayrlla~~m~~~g~ 305 (741)
.+- .| . +++-|..++ +++...|-.++.+-. +.++..+.+.+...|.+. +
T Consensus 134 ~lk-------------~G~~~t~~e~~~Av----~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~-----~ 191 (262)
T 1zco_A 134 LLK-------------RGMGNTIQELLYSA----EYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKEL-----S 191 (262)
T ss_dssp EEE-------------CCTTCCHHHHHHHH----HHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHH-----B
T ss_pred EEE-------------CCCCCCHHHHHHHH----HHHHHCCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHH-----H
T ss_conf 993-------------59999999999999----9999779986999989998889968223179999999750-----3
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 7563101246689999
Q 004620 306 DYPLHLGVTEAGEGED 321 (741)
Q Consensus 306 dyPLHLGVTEAG~~~~ 321 (741)
++|++...+.++...+
T Consensus 192 ~~pVi~d~sH~~g~~~ 207 (262)
T 1zco_A 192 HLPIIVDPSHPAGRRS 207 (262)
T ss_dssp SSCEEECSSTTTCSGG
T ss_pred CCCEEEECCCCCCCCC
T ss_conf 8988997499887210
No 6
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=1.00 E-value=1 Score=84.22 Aligned_cols=126 Identities=20% Similarity=0.336 Sum_probs=93.6
Q ss_pred CCCEEEEECC------CCCHHHHHHHHHHHHHHHHCCC----CCCEEECCC---CCCCCCCCHHH----HHHHHHHHHC-
Q ss_conf 8785885289------9972444687999999832036----863343288---88666435899----9999999845-
Q 004620 606 LGDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRN----TKTEYVSCP---SCGRTLFDLQE----ISAEIREKTS- 667 (741)
Q Consensus 606 iGDtIrIsl~------~~p~~ei~~va~~ILQa~rlR~----~kte~ISCP---sCGRTlfDLq~----~~~~Ik~~t~- 667 (741)
.|..||++.. +.+.+.+ ...+.+|+.+++.. ..+..+||| .|+....|-+. ++.+++....
T Consensus 386 ~gg~iRlT~~Qniil~gv~~e~l-~~i~~~L~~~Gl~~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~ 464 (570)
T 4g38_A 386 HKGDFRITANQNLIIAGVPESEK-AKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAK 464 (570)
T ss_dssp CSSEEEECTTSCEEEEEEEGGGH-HHHHHHHHHTTTTCCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHH
T ss_pred HCCEEEECCCCCEEEECCCHHHH-HHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 49969999998589913998999-99999999769987888761373879887765454676999999999999988753
Q ss_pred -CC-C-CCEEEEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCE--------EEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf -99-9-928998611443999878886055438895067553655--------455358823799999999996066
Q 004620 668 -HL-P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT--------VVKRGIAMEQATDALIQLIKDHGR 733 (741)
Q Consensus 668 -hL-k-gvkIAVMGCIVNGPGEmadAD~GyvGg~pgki~Ly~gke--------~V~~~Ipeeeavd~Li~lIk~~g~ 733 (741)
.+ | .++|+|.||. |+-|+..-||+|++|.+++...+|.|+. .+.++++++++++.+..+++.+..
T Consensus 465 ~~l~p~~iki~vSGCp-n~C~~~~~aDIGlvG~~~g~y~l~lGG~~~~~r~g~~~~~~v~~~ei~~~l~~ll~~y~~ 540 (570)
T 4g38_A 465 HGVSDEHIVMRVTGCP-NGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAK 540 (570)
T ss_dssp TTCTTCCCCEEEESST-TCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4777776189995787-512103536457997515616999799677752001432377989999999999999998
No 7
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=1.00 E-value=1 Score=74.59 Aligned_cols=125 Identities=20% Similarity=0.323 Sum_probs=87.7
Q ss_pred CCCEEEEECC------CCCHHHHHHHHHHHHHHHHCCCC----CCEEECCC---CCCCCCCCHHH----HHHHHHHHHC-
Q ss_conf 8785885289------99724446879999998320368----63343288---88666435899----9999999845-
Q 004620 606 LGDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNT----KTEYVSCP---SCGRTLFDLQE----ISAEIREKTS- 667 (741)
Q Consensus 606 iGDtIrIsl~------~~p~~ei~~va~~ILQa~rlR~~----kte~ISCP---sCGRTlfDLq~----~~~~Ik~~t~- 667 (741)
.|..||++.. +.+.+.+ .-.+..|+..++... -...++|| .|+.-..|-+. ++.++++...
T Consensus 313 ygg~irlT~~qni~l~gv~~~~l-~~l~~~L~~~Gl~~~~~~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~~ 391 (497)
T 1aop_A 313 HKGDFRITANQNLIIAGVPESEK-AKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAK 391 (497)
T ss_dssp CSSEEEECTTSCEEEEEEEGGGH-HHHHHHHHHTTTTCCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHH
T ss_pred HCCEEEECCCCCEEEECCCHHHH-HHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69989994899889923898999-99999999779977888754113515673658631354899999999999998740
Q ss_pred -CC-C-CCEEEEEEEEECCCCCCCCCCEEEECCCCCEEEEEECCEE--------EEECCCHHHHHHHHHHHHHHCC
Q ss_conf -99-9-9289986114439998788860554388950675536554--------5535882379999999999606
Q 004620 668 -HL-P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTV--------VKRGIAMEQATDALIQLIKDHG 732 (741)
Q Consensus 668 -hL-k-gvkIAVMGCIVNGPGEmadAD~GyvGg~pgki~Ly~gke~--------V~~~Ipeeeavd~Li~lIk~~g 732 (741)
.+ | .++|+|.||. |+-|...-||+|++|..+|++++|.|+.. +...+|++++.+.+..+++.+.
T Consensus 392 ~~l~p~~~~i~vSGCp-n~C~~~~~aDIGi~G~~~g~y~i~lGG~~~~~~~g~~~~~~v~~~ei~~~l~~l~~~y~ 466 (497)
T 1aop_A 392 HGVSDEHIVMRVTGCP-NGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWA 466 (497)
T ss_dssp TTCTTCCCCEEEESST-TCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 6788766389997880-30001100878999853797899989978886404464047999999999999999999
No 8
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=1.00 E-value=1 Score=72.40 Aligned_cols=173 Identities=14% Similarity=0.223 Sum_probs=127.9
Q ss_pred EEEEECEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC------------CCHHHHHHHHHHHHHHC
Q ss_conf 069970010289996488750589988989989999999984999999843------------99888999999998600
Q 004620 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV------------QGKREADACFEIKNSLV 156 (741)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvtv------------p~~~~A~al~~I~~~L~ 156 (741)
..|.||++.||+++|+.|..++... |.+...+.+.++.++||++||+.+ ++.+..+.|.+++++
T Consensus 129 t~i~i~~~~iG~~~~~~Iigpcsve--s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~-- 204 (385)
T 3nvt_A 129 TIVTVKGLPIGNGEPVFVFGPCSVE--SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDE-- 204 (385)
T ss_dssp CCEEETTEEETSSSCEEEEECSBCC--CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHH--
T ss_pred CEEEECCEEECCCCEEEEEEECCCC--CHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHH--
T ss_conf 6798899998899807999947738--899999999999981999697155467888476539999999999999997--
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 38866542415688878999983322935527998771000000133460899998776887499999999964990999
Q 004620 157 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 157 ~~~~~iPLVADIHF~~~~Al~a~~~v~KiRINPGNi~~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~aIRI 236 (741)
..+|++.++|....+.+.+ +.++-+.|..+|+.+ .++++.+...|+||-+
T Consensus 205 ---~Gl~~~te~~d~~~~~~l~-~~vd~lkIgs~~~~n--------------------------~~LL~~~a~~gkPVil 254 (385)
T 3nvt_A 205 ---YGLGVISEIVTPADIEVAL-DYVDVIQIGARNMQN--------------------------FELLKAAGRVDKPILL 254 (385)
T ss_dssp ---HTCEEEEECCSGGGHHHHT-TTCSEEEECGGGTTC--------------------------HHHHHHHHTSSSCEEE
T ss_pred ---CCCEEEEECCCHHHHHHHH-HHCCEEEECCCCCCC--------------------------HHHHHHHHCCCCCEEE
T ss_conf ---5997999048787899999-649999989553369--------------------------9999999702995899
Q ss_pred EECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCHH------HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5115887677886509991689999999999999799981699981-39966------9999999999976107887563
Q 004620 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK-ASNPV------VMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 237 GvN~GSL~~~il~~yg~tp~~mVeSAle~~~i~e~~~F~diviS~K-aSnv~------~~i~Ayrlla~~m~~~g~dyPL 309 (741)
-..-. .+++- ++.|.++ +.+.|-.++++--- .|.-+ +-+.+-..|.+. +++|.
T Consensus 255 k~G~~-----------~t~~e-~~~Ave~---i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~-----~~lpV 314 (385)
T 3nvt_A 255 KRGLS-----------ATIEE-FIGAAEY---IMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKE-----THLPV 314 (385)
T ss_dssp ECCTT-----------CCHHH-HHHHHHH---HHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHH-----BSSCE
T ss_pred ECCCC-----------CCHHH-HHHHHHH---HHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH-----CCCCE
T ss_conf 36988-----------99999-9999999---99759982999979988999998143698999999996-----49979
Q ss_pred CCCCCC
Q ss_conf 101246
Q 004620 310 HLGVTE 315 (741)
Q Consensus 310 HLGVTE 315 (741)
-...|.
T Consensus 315 ~~D~th 320 (385)
T 3nvt_A 315 MVDVTH 320 (385)
T ss_dssp EEEHHH
T ss_pred EECCCC
T ss_conf 984888
No 9
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=1.00 E-value=1 Score=69.72 Aligned_cols=107 Identities=14% Similarity=0.328 Sum_probs=78.3
Q ss_pred HHHHHHHHHHCCCCC----CEEECC---CCCCCCCCCHHH----HHHHHHHHHCC----CC-CCEEEEEEEEECCCCCCC
Q ss_conf 799999983203686----334328---888666435899----99999998459----99-928998611443999878
Q 004620 625 TSFNLLQGCRMRNTK----TEYVSC---PSCGRTLFDLQE----ISAEIREKTSH----LP-GVSIAIMGCIVNGPGEMA 688 (741)
Q Consensus 625 va~~ILQa~rlR~~k----te~ISC---PsCGRTlfDLq~----~~~~Ik~~t~h----Lk-gvkIAVMGCIVNGPGEma 688 (741)
-.+..|...++.... ...+|| |.|+.-.+|-+. ++.++++++.. ++ +++|+|.||. |+-|...
T Consensus 404 ~i~~~L~~~Gl~~~~s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~~~~~~~~~ki~vSGCp-N~Ca~~~ 482 (566)
T 1zj8_A 404 DLIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCP-NSCARIQ 482 (566)
T ss_dssp HHHHHHHHTTCBSSCCHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHHTHHHHTTCCSCCCEEEESST-TCTTCGG
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCCHHHH
T ss_conf 999999973997789875365116888253755033189999999999999862224346778558871487-5663444
Q ss_pred CCCEEEECCCC--------CEEEEEECCE---------EEE-ECCCHHHHHHHHHHHHHHCC
Q ss_conf 88605543889--------5067553655---------455-35882379999999999606
Q 004620 689 DADFGYVGGAP--------GKIDLYVGKT---------VVK-RGIAMEQATDALIQLIKDHG 732 (741)
Q Consensus 689 dAD~GyvGg~p--------gki~Ly~gke---------~V~-~~Ipeeeavd~Li~lIk~~g 732 (741)
-||+|++|..+ ..+.+|.|+. ++. .++|++++.+.+..+++.+.
T Consensus 483 ~aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~~~~g~~l~~~~v~~eei~~~l~~l~~~y~ 544 (566)
T 1zj8_A 483 IADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVRNFV 544 (566)
T ss_dssp GSSEEEEEEEEESSSSCEEEEEEEEESCBCSTTCBCCEECTTCCEETTTHHHHHHHHHHHHH
T ss_pred HCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 22534787861577886120599983787787774211034578999999999999999999
No 10
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=1.00 E-value=1 Score=51.85 Aligned_cols=95 Identities=21% Similarity=0.503 Sum_probs=73.0
Q ss_pred CCCEEECCC---CCCCCCCCHHHHHHHHHHHHC---CCC-CCEEEEEEEEECCCCCCCCCCEEEECCC----CC----EE
Q ss_conf 863343288---886664358999999999845---999-9289986114439998788860554388----95----06
Q 004620 638 TKTEYVSCP---SCGRTLFDLQEISAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA----PG----KI 702 (741)
Q Consensus 638 ~kte~ISCP---sCGRTlfDLq~~~~~Ik~~t~---hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~----pg----ki 702 (741)
.-...++|| .|.-..+|-+..+..+.+++. ++| .++|+|=||. |+=|...-+|+|++|.. .| .+
T Consensus 480 ~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~lp~k~kI~vSGCp-n~Ca~~~iaDIGlvG~~~~~~~G~~~~gy 558 (608)
T 2akj_A 480 LMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRPVRMHWTGCP-NSCGQVQVADIGFMGCMTRDENGKPCEGA 558 (608)
T ss_dssp TTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHHHEECSSCCEEEEESST-TCTTCGGGSSEEEEEEEEECTTCCEEEEE
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCCCCCCCEEEEEEEECCCCCCCCCEE
T ss_conf 53644507897878732333799999999999986278865279984898-75544423326899774136788534517
Q ss_pred EEEECCE---------EEEECCCHHHHHHHHHHHHH-HCCC
Q ss_conf 7553655---------45535882379999999999-6066
Q 004620 703 DLYVGKT---------VVKRGIAMEQATDALIQLIK-DHGR 733 (741)
Q Consensus 703 ~Ly~gke---------~V~~~Ipeeeavd~Li~lIk-~~g~ 733 (741)
.+|.|+. .+...|+++++.+.+..+++ .++.
T Consensus 559 ~v~lGG~~g~~~rlg~~l~~~v~~eev~~~l~~ll~~~y~~ 599 (608)
T 2akj_A 559 DVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQFGA 599 (608)
T ss_dssp EEEECCBCSTTCBCCEEEEEEEETTTHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99989817887731447655878999999999999998764
Done!