BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004622
(741 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 75.9 bits (185), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 71/135 (52%)
Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
EAW G A G+ EAI+ KALE +P SA+ + G +K D++ A+E
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
++LD + A+ LG A G+Y +A E + KA++LD EAW +L Y + +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 569 KALECLQQVLYIDKR 583
+A+E Q+ L +D R
Sbjct: 121 EAIEYYQKALELDPR 135
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 70/132 (53%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P + EAW G A G+ EAI+ KA
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
LE +P SA+ + G +K D++ A+E ++LD + A+ LG A G+Y +
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 536 AEEAHLKAIQLD 547
A E + KA++LD
Sbjct: 122 AIEYYQKALELD 133
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 64/126 (50%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
+ EAW G A G+ EAI+ KALE +P SA+ + G +K D++ A+E
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 508 ACVKLD 513
++LD
Sbjct: 128 KALELD 133
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482
+ EAW G A G+ EAI+ KALE +P S
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
A+ + G +K D++ A+E ++LD + A+ LG A G+Y +A E + K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
A++LD EAW +L Y + ++A+E Q+ L +D R ++A+
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAW G A G+ EAI+ KALE +PN+A+ + G +K D++ A+E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
++LD N A+ LG A G+Y +A E + KA++LD N EA Q+L N
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------KQNLGN 119
Query: 567 SEK 569
+++
Sbjct: 120 AKQ 122
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 58/116 (50%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P+ EAW G A G+ EAI+ KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
LE +PN+A+ + G +K D++ A+E ++LD N A LG A G
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 51/97 (52%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
EAW G A G+ EAI+ KALE +PN+A+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ + G +K D++ A+E ++LD N A+ LG A G+Y +A E +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
KA++LD N EAW +L Y + ++A+E Q+ L +D ++A
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
A+ LG A G+Y +A E + KA++LD N EAW +L Y + ++A+E Q+ L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 579 YIDKRFSKAY 588
+D ++A+
Sbjct: 71 ELDPNNAEAW 80
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 448 AGEAWKRRGQARAALG 463
EA + G A+ G
Sbjct: 110 NAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAWK G A G+ +AI+ KALE +PN+A + G +K D+ A+E
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
++LD N A+ G A G+Y+KA E + KA++LD N +A Q+L N
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA-------KQNLGN 119
Query: 567 SEK 569
+++
Sbjct: 120 AKQ 122
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP A G A Q + + AI + +A++ +P+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
+AW RRG A G+ +AI+D KALE +PN+A
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 57/116 (49%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P+ AW G A G+ +AI+ KA
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
LE +PN+A + RG +K D+ A+ED ++LD N A LG A G
Sbjct: 70 LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ G +K D+ A+E ++LD N SA+ LG A G+Y+KA E +
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
KA++LD N +AW Y + +KA+E Q+ L +D +KA
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 46/89 (51%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
A+ LG A G+Y+KA E + KA++LD N AW +L Y + +KA+E Q+ L
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 579 YIDKRFSKAYXXXXXXXXXXXXXKKAIKD 607
+D +KA+ +KAI+D
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIED 99
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP +A RG A Q + + AI D+ +A++ +P+
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 448 AGEAWKRRGQARAALG 463
+A + G A+ G
Sbjct: 110 NAKAKQNLGNAKQKQG 125
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 75/151 (49%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
G + + + + AI + + ++++P+ E + G+ +G +AI+ L K + +
Sbjct: 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
SA+ + G NF + AA++ L + L+ AY LGL S+GE+ KA EA+
Sbjct: 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
K I + F+ A+ + Y+ ++A++
Sbjct: 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
G + G+ AI+ K L+ +PN+ + L + G N A+E L V LD
Sbjct: 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
+ AY LG A I E + A +A +AI L+ + +A+ L Y + +KA+E +
Sbjct: 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 576 QVLYIDKRFSKAY 588
+ + I F +AY
Sbjct: 132 KTISIKPGFIRAY 144
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 47/109 (43%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ K+ +V+ L G ++ G AI + + D EA G+A E
Sbjct: 30 KVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480
+AAI AI N +A+ + G ++GE +AI+ K + +P
Sbjct: 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
E + Y +G + G++ A A+ K ++ D N +E L + Y D+ A+E L
Sbjct: 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL 62
Query: 575 QQVLYIDKRFSKAY 588
++ + +D ++AY
Sbjct: 63 KKFVVLDTTSAEAY 76
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAW G A G+ EAI+ KALE PN+A+ + G +K D++ A+E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
++L N A+ LG A G+Y +A E + KA++L N EA Q+L N
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA-------KQNLGN 119
Query: 567 SEK 569
+++
Sbjct: 120 AKQ 122
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ P+ EAW G A G+ EAI+ KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
LE PN+A+ + G +K D++ A+E ++L N A LG A G
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ P EA G A Q + + AI + +A++ P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
EAW G A G+ EAI+ KALE PN+A+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ + G +K D++ A+E ++L N A+ LG A G+Y +A E +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
KA++L N EAW +L Y + ++A+E Q+ L
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
G+ AI + L+ P + + I A ++E A+ + A+Q NP
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
G ALG EA KA+E +PN A G V + A+ V LD
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
AY LG L + +A A+L+A+ L N G+L Y + + A++
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 575 QQVLYIDKRFSKAY 588
++ + + F AY
Sbjct: 261 RRAIELQPHFPDAY 274
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK- 497
T AI+ NP EA+ G G+ EAI+ AL +P+ D G +N
Sbjct: 57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID-----GYINLAAAL 111
Query: 498 ----DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
D AV+ + ++ + + + LG L ++G ++A+ +LKAI+ NF A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
W +L + A+ ++ + +D F AY
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
G+ A + + + ++ P + A G Q E+ AI F +A+ +P+ +A+
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
G A+ +AL PN A + V ++ + A++ ++L
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
AY L AL G +AE+ + A++L ++ +L ++ N E+A+
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 575 QQVLYIDKRFSKAY 588
++ L + F+ A+
Sbjct: 329 RKALEVFPEFAAAH 342
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAW G A G+ EAI+ KALE +PN+A+ + G +K D++ A+E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIG 531
++LD N A LG A G
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P+ EAW G A G+ EAI+ KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 476 LEFEPNSAD 484
LE +PN+A+
Sbjct: 70 LELDPNNAE 78
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ + G +K D++ A+E ++LD N A+ LG A G+Y +A E +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
KA++LD N EA Q+L N+++
Sbjct: 67 QKALELDPNNAEA-------KQNLGNAKQ 88
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
A+ LG A G+Y +A E + KA++LD N EAW +L Y + ++A+E Q+ L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 579 YIDKRFSKA 587
+D ++A
Sbjct: 71 ELDPNNAEA 79
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 448 AGEAWKRRGQARAALG 463
EA + G A+ G
Sbjct: 76 NAEAKQNLGNAKQKQG 91
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
NP K +G G+ +A++ ++A++ P A + R K +F A++
Sbjct: 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
D C++L+ YT AL ++ +Y KA + + KA+ LD + EA
Sbjct: 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
NRA CY++L + ++DC++ +QL+PT ++ Y K A A+ +A+ V++K +
Sbjct: 55 NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 52/108 (48%)
Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
P+ A ++ +G F+ D+ A++ + +K + ++ Y+ + + E++ A +
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
+ IQL+ F++ + + + + KA++ Q+ L +D +A
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
CNRA YS+L + ++DC++A+ +DP +AY G A S+L + EA++ ++K E
Sbjct: 50 CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 49/105 (46%)
Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
+ + + E K G + + A+ KA+E P +A R K ++ A
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
V+D + +D AY +GLALSS+ ++ +A + KA++LD
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 55/125 (44%)
Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
S+ S + + G Q+ + +A+ + + ++ +P R A +
Sbjct: 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
A+ D AI +P+ +A+ R G A ++L + VEA+ KALE +P++ I
Sbjct: 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124
Query: 494 FKFKD 498
K ++
Sbjct: 125 LKLRE 129
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 51/118 (43%)
Query: 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468
+ED E L G + EAA+ + +AI+ NP+ + R A + LG A
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
+QD +A+ +P + G+ AV ++LD +N++ + L +A
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 46/105 (43%)
Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
E + A+ L G K ++F AAV ++L+ N + A S +G Y A
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
+ +AI +D + +A+G + L +A+ ++ L +D
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
NP + K +G G+ A++ ++A++ +P +A + R K +F A++
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
D C++LD + Y L ++ E+ KA+ A+ A+Q+D + EA
Sbjct: 69 DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
NRA C ++L + + DCD ++LD ++ YI K A+ S ++ YE A
Sbjct: 52 NRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM----REWSKAQRAYEDA 107
Query: 134 LH 135
L
Sbjct: 108 LQ 109
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
AR+E + + +W A++ ++ ++ E + NRA ++L I DC+KA++
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 98 LDPTLLQAYILKGCA 112
DP ++AYI K A
Sbjct: 202 KDPNFVRAYIRKATA 216
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
A+ +TE I+ P + R A A L EAI D +KA+E +PN +
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217
Query: 494 FKFKDFNAAVEDLSACVKLDKE 515
K++ +A+E L A D E
Sbjct: 218 IAVKEYASALETLDAARTKDAE 239
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 33/170 (19%)
Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
L R A + E E AIS +A++ +K ++ A +G + + DL K +E
Sbjct: 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100
Query: 478 F------EPNSADILHE---------------------------RGIVNFKFKDFNAAVE 504
+ E +ADIL + G F D+ AV+
Sbjct: 101 YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
+ +K E+ Y+ AL+ + + +A KAI+ D NF+ A+
Sbjct: 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
AR+E + + +W A++ ++ ++ E + NRA ++L I DC+KA++
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 98 LDPTLLQAYILKGCAFSALGRKEEAL 123
DP ++AYI K A A+ AL
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASAL 92
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
A+ +TE I+ P + R A A L EAI D +KA+E +PN +
Sbjct: 23 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82
Query: 494 FKFKDFNAAVEDLSACVKLDKE 515
K++ +A+E L A D E
Sbjct: 83 IAVKEYASALETLDAARTKDAE 104
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
+ EAW G A G+ EAI+ KALE +P SA+ + G +K D++ A+E
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 508 ACVKLD 513
++LD
Sbjct: 62 KALELD 67
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P + EAW G A G+ EAI+ KA
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 476 LEFEPNS 482
LE +P S
Sbjct: 64 LELDPRS 70
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
A+ LG A G+Y +A E + KA++LD EAW +L Y + ++A+E Q+ L
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 579 YIDKR 583
+D R
Sbjct: 65 ELDPR 69
Score = 36.2 bits (82), Expect = 0.070, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
SA+ + G +K D++ A+E ++LD + A+ LG A G+Y +A E +
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 542 KAIQLD 547
KA++LD
Sbjct: 62 KALELD 67
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
Query: 448 A 448
+
Sbjct: 70 S 70
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
RG +LG A D S+AL P+ ++ + GI + +F+AA E + ++LD
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALE 572
A+ G+AL G K A++ L Q D N F W +L + Q L + ++A E
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE--QKL-DEKQAKE 165
Query: 573 CLQQ 576
L+Q
Sbjct: 166 VLKQ 169
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
GI G + +A FD +L+ DP Y A + RG A + + A D Q +P+
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-------NSADILHERGIVNFKF 496
S P+ ++ + G EA++ KALE P N A +L ++G
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG------ 57
Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
A+ +++ AY+ +G L + + + A + + +AIQ++ F +A +
Sbjct: 58 -KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
L ++D N +A+ + L + F AY
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
+G A+ ++ + L+ P + A + Q +L+ A+ + EAI+ +P+ +A+
Sbjct: 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
G + + A+Q ++A++ P AD ++ + A+ +KL
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAI-----QLDRNFLEA 553
+ AY L L + ++ +E K + QL++N L +
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447
GK +A+ ++++ + A + RG Q +L+ A DF + ++SNPS
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 448 ------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
+ E + R QA A G + AI L K LE A++ R K +
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193
Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
A+ DL A KL +N A+ + +G+++ + + ++LD++ + H Q
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
+L A+S F A+ +P A+ RR A+G+S A+ DL+K ++ + + +R
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100
Query: 490 GIVNFKFKDFNAAVEDLSACVK 511
G + K + A +D +K
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLK 122
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%)
Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
V+ L G + G+ A A+S F + DP A R T + +AA+ D T+
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
IQ A +RG G+ EA D K L+ P+
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447
GK +A+ ++++ + A + RG Q +L+ A DF + ++SNPS
Sbjct: 74 GKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 448 ------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
+ E + R QA A G + AI L K LE A++ R K +
Sbjct: 134 QSQLIKSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193
Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
A+ DL A KL +N A+ + +G+++ + + ++LD++ + H Q
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%)
Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
V+ L G + G+ A A+S F + DP A R T + +AA+ D T+
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTK 85
Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
IQ A +RG G+ EA D K L+ P+
Sbjct: 86 VIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%)
Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
S G A + +Y+ AI ++ Q L P P L R A + + E A D A +
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
P +AW R G AR + + A + K +E E N +RG+ K K
Sbjct: 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512
K G A A E +AI ++AL P + L R A ED +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
D + A++ LGLA + +YK A+EA+ K I+ + N
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 50 RNWSKAIRILDSLL--AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
+ +SKAI + L A + I + NRA YS H+ D + A +DP +A+
Sbjct: 25 KEYSKAIDLYTQALSIAPANPIY-LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 108 LKGCAFSALGRKEEALSVWEKGYEHALHQSAD-LKQFLE 145
G A + + A +EKG E + +D +K+ LE
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 13/175 (7%)
Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
L+ GI + K + A F + DP + A IG + A + E + AIS +T A +
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 445 NPSAGEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
+ G LG + E +Q +++P +L+E G+V F D
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP---LLLNELGVVAFNKSDMQT 493
Query: 502 AVEDLSACVKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
A+ + L K+ +S + LG A + Y A +A + + L N
Sbjct: 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 140 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 199
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 200 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 259
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 260 GEGGAMSENIWSTLRLALSMLGQ 282
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
G R + +L A+ F A+Q +P EAW+ G +A + + AI L + LE +P+
Sbjct: 8 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 67
Query: 482 SADIL 486
+ L
Sbjct: 68 NQTAL 72
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 8 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 67
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 68 NQTALM--ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 125
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 126 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 185
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 186 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 227
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 6/158 (3%)
Query: 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478
+GRG+ + E A FT+AI+ N + +++ E A+ KALE
Sbjct: 30 MGRGSEFG---DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL 86
Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
+ ++A + G V + + A + ++ EN + LG L + + K A
Sbjct: 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146
Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
+A++L+ N EA QF LAN E L Q
Sbjct: 147 YLQRAVELNENDTEA---RFQFGMCLANEGMLDEALSQ 181
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
R G+ NEG A+S F + ++DP + +A G A++ E A+ +AI
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221
Query: 444 SNP 446
P
Sbjct: 222 IQP 224
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A + L+ A+S F + +P +A+ G A +A++ L KA
Sbjct: 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219
Query: 476 LEFEPNSADILHERGIV 492
++ +P+ LH + ++
Sbjct: 220 IDIQPDHMLALHAKKLL 236
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
S G+Y+KA EA KAI+ ++ + + + E+AL + L +D + A
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 588 Y 588
Y
Sbjct: 94 Y 94
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 15/188 (7%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
R + GK +A+ +++ + A + RG Q +L+ A DF + ++SNP
Sbjct: 43 RATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Query: 447 S-------------AGEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGI 491
S A E + R QA A + AI L K LE A++ R
Sbjct: 103 SEQEEKEAESQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
K + A+ DL A KL +N A+ + +G+++ + + ++LD++
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222
Query: 552 EAWGHLTQ 559
+ H Q
Sbjct: 223 RCFAHYKQ 230
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 367 KFCVTRISKSKSISVDF---RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT 423
K + ++K ++ DF RL RG + +GK A F ++LK +P E
Sbjct: 54 KAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113
Query: 424 ---ARAFQRELEAAI-----SDFTEAIQSNPSAGEA--W-----KRRGQARAALGESVEA 468
A QR A+ +D+T AI E W + R + GE +A
Sbjct: 114 LVKADEXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173
Query: 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
I DL A + + ++ + ++ + ++ D ++ ++ C+KLD+++K + +
Sbjct: 174 ISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
+L A+S F A+ +P A+ RR A G+S A+ DL+K + + + +R
Sbjct: 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQR 77
Query: 490 GIVNFKFKDFNAAVEDLSACVK 511
G + K + A +D +K
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLK 99
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 163 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 222
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 223 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 282
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 283 GEGGAMSENIWSTLRLALSMLGQ 305
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 14 QFEEENPLRDHPQP-FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 72
Query: 464 ESVEAIQDLSKALEFEPNSADIL 486
+ + AI L + LE +P++ L
Sbjct: 73 QELLAISALRRCLELKPDNQTAL 95
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 31 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 91 NQTALM--ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 148
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 149 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 208
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 209 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 154 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 213
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 214 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 273
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 274 GEGGAMSENIWSTLRLALSMLGQ 296
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 5 QFEEENPLRDHPQP-FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 63
Query: 464 ESVEAIQDLSKALEFEPNSADIL 486
+ + AI L + LE +P++ L
Sbjct: 64 QELLAISALRRCLELKPDNQTAL 86
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 22 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 81
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 82 NQTALM--ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 139
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 140 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 199
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 200 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 241
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 163 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 222
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 223 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 282
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 283 GEGGAMSENIWSTLRLALSMLGQ 305
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 14 QFEEENPLRDHPQP-FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 72
Query: 464 ESVEAIQDLSKALEFEPNSADIL 486
+ + AI L + LE +P++ L
Sbjct: 73 QELLAISALRRCLELKPDNQTAL 95
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 31 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 91 NQTALM--ALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 148
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 149 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 208
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 209 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 323 GEGGAMSENIWSTLRLALSMLGQ 345
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 54 QFEEENPLRDHPQP-FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112
Query: 464 ESVEAIQDLSKALEFEPNSADIL 486
+ + AI L + LE +P++ L
Sbjct: 113 QELLAISALRRCLELKPDNQTAL 135
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 131 NQTALM--ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 56/109 (51%)
Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
L ALE PN A + G++ ++++A +L V+L ++ + LG L++
Sbjct: 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220
Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
++A +A+ +A+ ++ ++ ++ Y +++ + A + L + +Y+
Sbjct: 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 56/109 (51%)
Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
L ALE PN A + G++ ++++A +L V+L ++ + LG L++
Sbjct: 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220
Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
++A +A+ +A+ ++ ++ ++ Y +++ + A + L + +Y+
Sbjct: 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
L G+ G+Y +A+++F++ LKE+P PEAL + + A+ + +
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68
Query: 445 NPSAGEAWKRRGQARAALGESVE-----------AIQDLSKALEFEPNSADILHERGIVN 493
P + +A AL E A+ L A P A + +RG+V
Sbjct: 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVY 128
Query: 494 FKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLAL----SSIGEYKKAEEAHLKAIQLD 547
+ + A L + L+ E +SA L L++ ++ +Y KA E K + L
Sbjct: 129 ALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188
Query: 548 RNFLEA 553
+ A
Sbjct: 189 VRYASA 194
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
+S E KAL+ + N++ + + RG +NF ++++ A +D +LD EN + Y
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPY 341
Query: 523 LGLA 526
+ LA
Sbjct: 342 IQLA 345
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%)
Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
D + P+ G G E AI F A+ P W R G A S EA++
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
++ALE +P + GI + AV + + L +++++
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
NRA CY +++ + + DC +AL+LD ++A+ G + +EA++ ++ Y A
Sbjct: 48 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107
Query: 134 LHQ 136
Q
Sbjct: 108 KEQ 110
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
NRA CY +++ + + DC +AL+LD ++A+ G + +EA++ ++ Y A
Sbjct: 43 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102
Query: 134 LHQ 136
Q
Sbjct: 103 KEQ 105
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
S E + KA++ P + RG + F +D+ A ED L+ EN Y L
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351
Query: 525 LALSSIGEYKKAE 537
L G++ ++E
Sbjct: 352 CLLYKQGKFTESE 364
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
Y L RG + AI + AI+ +P+ + + G+ + I+ +
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
KALE +P+ + L R N +F A+ DLS
Sbjct: 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
S E + KA++ P + RG + F +D+ A ED L+ EN Y L
Sbjct: 288 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 347
Query: 525 LALSSIGEYKKAE 537
L G++ ++E
Sbjct: 348 CLLYKQGKFTESE 360
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
Y L RG + AI + AI+ +P+ + + G+ + I+ +
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
KALE +P+ + L R N +F A+ DLS
Sbjct: 80 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
AI+ +KALE + N+ L RG + DF A D ++L NK+A T L +
Sbjct: 215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
AI+ +KALE + N+ L RG + DF A D ++L NK+A T L +
Sbjct: 215 AIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL 98
A ++ K+ S + + ++ AQ+ + N A C+ +L+ I C+KAL+L
Sbjct: 166 ALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225
Query: 99 DPTLLQAYILKGCAFSAL 116
D + +G A A+
Sbjct: 226 DSNNEKGLFRRGEAHLAV 243
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
+ A I+ K+ S + +S ++S+ + N A CY +L + + CDKAL
Sbjct: 285 VQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344
Query: 97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE-HALHQSADLKQFL 144
LD + +G A + E A +EK E + +++A L+ F+
Sbjct: 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM 393
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+Y A+ D+ L D + L RG A+ E E+A DF + ++ NP
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
A++ KA E +P + + + V F+ D+N E +++ +EN+ Y + A
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82
Query: 528 SSIGEYKKAEEAHLKAIQL 546
+ IG EE + AI
Sbjct: 83 ARIGNSYFKEEKYKDAIHF 101
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
E G +K KDF+ A++ +LD N + T G+Y K E KAI++
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 548 RNFLEAWGHLTQFYQDLANS 567
R E + + + Y + NS
Sbjct: 69 RENREDYRQIAKAYARIGNS 88
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
NR+ Y + E + + + D +A++LD ++ Y + + ALG+ AL +E
Sbjct: 52 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
K KD+ A++ S +K+DK N A LG+A G ++A+E KA L+ N L+
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
P+ ++ G + + + A+ EA++ +PS +A RR Q L E +A+ D
Sbjct: 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 329
Query: 472 LSKALEFEPNSADILHE 488
L KA E P I E
Sbjct: 330 LKKAQEIAPEDKAIQAE 346
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
A++ KA E +P + + + V F+ D+N E +++ +EN+ Y + A
Sbjct: 23 ALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRMIAYAY 82
Query: 528 SSIGEYKKAEEAHLKAIQL 546
+ IG EE + AI
Sbjct: 83 ARIGNSYFKEEKYKDAIHF 101
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ + + VD L GIA V G + ++ L + P + G ++
Sbjct: 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
+ A+ + ++NP R G A LG EAI AL PN + R I
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKV--HRAI 150
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
F ++ E L K ++ ++ A L L
Sbjct: 151 A-FSYEQMGRHEEALPHFKKANELDEGASVELAL 183
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 60/161 (37%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D + + G A ++ ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
+ G + + A+ L K E P + ++ G+ F+ A++
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSF 133
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ L + + + +G +++A KA +LD
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
+ A I+ K+ S + +S ++S+ + N A CY +L + + CDKAL
Sbjct: 285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344
Query: 97 QLD 99
LD
Sbjct: 345 GLD 347
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+Y A+ D+ L D + L RG A+ E E+A DF + ++ NP
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
A++ KA E +P + + + V F+ D+N E +++ +EN+ Y + A
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82
Query: 528 SSIGEYKKAEEAHLKAIQL 546
+ IG EE + AI
Sbjct: 83 ARIGNSYFKEEKYKDAIHF 101
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 486 LHERGIVN--FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
L E+ + N +K KDF+ A++ +LD N + T G+Y K E KA
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 544 IQLDRNFLEAWGHLTQFYQDLANS 567
I++ R E + + + Y + NS
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNS 88
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 428 QRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
Q ++E A+ E +Q+ P EA+ G A LG+ +A+ + A+E P+S +
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 487 HER---GIVNFKFKDFNAAVE 504
+ I+NF KD +E
Sbjct: 73 ARKMVMDILNFYNKDMYNQLE 93
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
NR+ Y + E + + + D +A++LD ++ Y + + ALG+ AL +E
Sbjct: 60 NRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 113
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 444 SNPSAGEAWKRRGQARAALGESVEA------IQDLSKALEFEPNSADILHERGIVNFKFK 497
++P A A KR + + + +A I+ S+A+E P++A R + + +
Sbjct: 10 TDPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 69
Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
+ A+ D + ++LDK+ Y + ++G+++ A
Sbjct: 70 CYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAA 108
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
NR+ Y + E + + + D +A++LD ++ Y + + ALG+ AL +E
Sbjct: 45 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D AF E+ +
Sbjct: 14 KGISHAKAGRYSEAVVMLEQVYDAD--------------AFDVEVALHL----------- 48
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
G A G + L +++ P++ + G+ + + ++ AV L
Sbjct: 49 ---------GIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLL 99
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
+ + N + LG+AL ++G + +A ++ A+ L N + + Y+ + +
Sbjct: 100 VKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159
Query: 567 SEKALECLQQVLYIDKR 583
E+AL ++ +D+R
Sbjct: 160 HEEALPHFKKANELDER 176
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ + + VD L GIA V G + ++ L + P + G ++
Sbjct: 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
+ A+ + ++NP R G A LG EAI AL PN + R I
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV--HRAI 150
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
F ++ E L K ++ ++ A L L
Sbjct: 151 A-FSYEQMGRHEEALPHFKKANELDEGASVELAL 183
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 60/161 (37%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D + + G A ++ ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
+ G + + A+ L K E P + ++ G+ F+ A++
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ L + + + +G +++A KA +LD
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ + + VD L GIA V G + ++ L + P + G ++
Sbjct: 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
+ A+ + ++NP R G A LG EAI AL PN + R I
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV--HRAI 150
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
F ++ E L K ++ ++ A L L
Sbjct: 151 A-FSYEQMGRHEEALPHFKKANELDEGASVELAL 183
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 60/161 (37%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D + + G A ++ ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
+ G + + A+ L K E P + ++ G+ F+ A++
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ L + + + +G +++A KA +LD
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
NR+ Y++ ++ D K + L P + Y K A L R EEA +E+G +H
Sbjct: 43 NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 4/137 (2%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ N KY A FD +K++ A IG+ A + + I+ TE I++ P
Sbjct: 49 GVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPG 108
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER----GIVNFKFKDFNAAV 503
K G+ + ++ KA E ++ D+ ++ + + +N
Sbjct: 109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA 168
Query: 504 EDLSACVKLDKENKSAY 520
+ L L NK Y
Sbjct: 169 DVLRKATPLASSNKEKY 185
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 497 KDFNAAVEDLSACVKLDKENKSAYTY-LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
K++ A E S +KL S Y G+ +I +YK+A + AI+ + N A+
Sbjct: 21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYI 80
Query: 556 HLTQFYQDLANSEKALECLQQ 576
+ Y+D N+++ + L +
Sbjct: 81 GKSAAYRDXKNNQEYIATLTE 101
>pdb|2CIO|B Chain B, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 121
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
FT ++SNP+ G W R G A L + AIQ SK P+ H R +V
Sbjct: 23 FTIELESNPTTGYTWLRSGLAGTELSDCTFAIQ--SKFNNRAPHDNHKNHRRLLV 75
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+Y AI + +L E+ P+AL RG A+A ++++A DF +A + P
Sbjct: 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
R+ A+I D A++S+P AW R + L + +A + +AL +P+SA+I +
Sbjct: 25 RQATASIED---ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81
Query: 489 RG 490
G
Sbjct: 82 YG 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,181,100
Number of Sequences: 62578
Number of extensions: 630845
Number of successful extensions: 1797
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1487
Number of HSP's gapped (non-prelim): 282
length of query: 741
length of database: 14,973,337
effective HSP length: 106
effective length of query: 635
effective length of database: 8,340,069
effective search space: 5295943815
effective search space used: 5295943815
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)