Query 004622
Match_columns 741
No_of_seqs 931 out of 5235
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:23:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.6E-45 3.4E-50 365.9 37.1 463 42-682 54-523 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 5.4E-45 1.2E-49 362.0 35.5 421 43-641 89-513 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 8.6E-39 1.9E-43 379.4 59.2 629 6-710 131-802 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-38 9.3E-43 373.5 63.4 561 41-711 130-702 (899)
5 TIGR00990 3a0801s09 mitochondr 100.0 6.3E-38 1.4E-42 349.7 54.7 431 36-646 127-567 (615)
6 KOG0548 Molecular co-chaperone 100.0 1.4E-39 3.1E-44 321.6 32.9 467 37-564 3-473 (539)
7 PRK11447 cellulose synthase su 100.0 5.6E-37 1.2E-41 363.6 58.1 361 310-680 274-739 (1157)
8 KOG0547 Translocase of outer m 100.0 1.8E-36 3.8E-41 294.4 40.7 445 34-618 113-570 (606)
9 PRK11447 cellulose synthase su 100.0 2.8E-35 6E-40 349.2 57.9 499 41-682 32-701 (1157)
10 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-33 2.8E-38 315.1 48.4 429 71-682 129-572 (615)
11 KOG2002 TPR-containing nuclear 100.0 5.6E-34 1.2E-38 299.2 40.4 532 52-688 146-716 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 1.8E-30 4E-35 293.4 54.5 553 41-679 49-738 (987)
13 PRK09782 bacteriophage N4 rece 100.0 2.4E-30 5.1E-35 292.5 47.3 367 299-671 370-763 (987)
14 PRK15174 Vi polysaccharide exp 100.0 4.8E-30 1E-34 284.8 45.6 384 43-603 12-409 (656)
15 KOG2002 TPR-containing nuclear 100.0 4.6E-29 1E-33 262.4 49.5 528 41-707 99-709 (1018)
16 PRK15174 Vi polysaccharide exp 100.0 6.9E-29 1.5E-33 275.6 43.7 336 306-652 43-383 (656)
17 PRK10049 pgaA outer membrane p 100.0 3.5E-28 7.6E-33 276.0 45.9 395 46-618 25-460 (765)
18 KOG0547 Translocase of outer m 100.0 4.7E-29 1E-33 243.0 32.3 370 302-681 112-566 (606)
19 PRK10049 pgaA outer membrane p 100.0 9.2E-27 2E-31 264.4 46.5 405 67-652 13-458 (765)
20 KOG1126 DNA-binding cell divis 100.0 7E-27 1.5E-31 237.8 25.6 290 320-617 334-623 (638)
21 KOG1173 Anaphase-promoting com 100.0 2.5E-25 5.4E-30 221.6 35.5 429 46-618 59-522 (611)
22 KOG2003 TPR repeat-containing 100.0 4.5E-26 9.7E-31 219.7 26.1 471 15-600 216-709 (840)
23 KOG1173 Anaphase-promoting com 99.9 8.5E-24 1.8E-28 210.7 40.7 467 39-652 19-520 (611)
24 KOG1126 DNA-binding cell divis 99.9 8.9E-26 1.9E-30 229.8 26.2 283 369-653 341-623 (638)
25 KOG0624 dsRNA-activated protei 99.9 9.2E-24 2E-28 197.1 30.2 336 41-559 43-383 (504)
26 KOG1155 Anaphase-promoting com 99.9 6.2E-23 1.3E-27 199.4 36.6 295 345-648 233-534 (559)
27 KOG2003 TPR repeat-containing 99.9 2.5E-23 5.4E-28 200.9 33.3 285 380-666 418-708 (840)
28 PRK11788 tetratricopeptide rep 99.9 3.2E-23 6.8E-28 220.2 37.1 298 306-612 36-345 (389)
29 KOG1155 Anaphase-promoting com 99.9 8.8E-23 1.9E-27 198.4 35.1 358 303-677 162-532 (559)
30 PRK11788 tetratricopeptide rep 99.9 5.6E-23 1.2E-27 218.3 37.5 301 381-684 35-350 (389)
31 PRK14574 hmsH outer membrane p 99.9 4.7E-21 1E-25 212.9 50.7 436 38-618 36-517 (822)
32 PRK14574 hmsH outer membrane p 99.9 4E-21 8.6E-26 213.6 48.8 441 10-588 44-521 (822)
33 KOG0624 dsRNA-activated protei 99.9 3.7E-23 8E-28 193.1 27.2 307 304-618 37-374 (504)
34 KOG2076 RNA polymerase III tra 99.9 7.4E-21 1.6E-25 199.9 46.5 362 41-503 144-546 (895)
35 KOG0548 Molecular co-chaperone 99.9 3.9E-22 8.4E-27 198.4 33.9 382 74-634 7-473 (539)
36 KOG0495 HAT repeat protein [RN 99.9 3.9E-20 8.4E-25 186.9 41.7 335 304-649 515-879 (913)
37 PLN03081 pentatricopeptide (PP 99.9 1.4E-19 3E-24 205.5 47.6 453 42-683 93-559 (697)
38 KOG2076 RNA polymerase III tra 99.9 5.6E-20 1.2E-24 193.4 37.9 368 305-682 139-556 (895)
39 PLN03081 pentatricopeptide (PP 99.9 1.4E-19 3.1E-24 205.4 44.7 450 12-649 99-556 (697)
40 PLN03077 Protein ECB2; Provisi 99.9 4.4E-19 9.5E-24 206.5 48.8 486 38-684 224-723 (857)
41 KOG1174 Anaphase-promoting com 99.9 2.3E-19 5E-24 172.0 37.3 287 323-618 216-504 (564)
42 KOG1129 TPR repeat-containing 99.9 3.9E-20 8.5E-25 172.0 29.3 233 385-618 227-462 (478)
43 PLN03218 maturation of RBCL 1; 99.9 1.7E-17 3.7E-22 190.0 57.2 496 41-687 375-915 (1060)
44 PLN03218 maturation of RBCL 1; 99.9 4.5E-17 9.7E-22 186.5 59.7 490 7-647 377-906 (1060)
45 PLN03077 Protein ECB2; Provisi 99.9 1.8E-18 3.9E-23 201.3 47.4 355 306-682 324-687 (857)
46 PF13429 TPR_15: Tetratricopep 99.9 3.3E-22 7.1E-27 200.9 13.5 260 383-646 10-273 (280)
47 PF13429 TPR_15: Tetratricopep 99.9 5.5E-22 1.2E-26 199.3 14.3 269 334-614 5-277 (280)
48 KOG4162 Predicted calmodulin-b 99.9 2.4E-18 5.3E-23 178.1 40.7 412 47-618 334-787 (799)
49 PRK12370 invasion protein regu 99.9 2.6E-19 5.7E-24 196.2 35.1 261 383-647 260-533 (553)
50 KOG0495 HAT repeat protein [RN 99.9 4.6E-17 9.9E-22 164.9 45.7 366 314-682 415-847 (913)
51 TIGR00540 hemY_coli hemY prote 99.9 1E-18 2.2E-23 184.6 35.6 299 306-613 85-398 (409)
52 KOG1174 Anaphase-promoting com 99.9 2.6E-18 5.6E-23 164.9 33.2 287 304-599 231-519 (564)
53 KOG0550 Molecular chaperone (D 99.9 1.6E-19 3.5E-24 173.5 24.4 288 36-549 49-353 (486)
54 KOG1156 N-terminal acetyltrans 99.9 2.3E-17 4.9E-22 167.7 41.1 354 311-678 81-508 (700)
55 KOG1127 TPR repeat-containing 99.9 8E-19 1.7E-23 185.4 31.3 354 82-576 471-909 (1238)
56 PRK11189 lipoprotein NlpI; Pro 99.9 6.6E-19 1.4E-23 176.9 28.8 235 393-633 38-283 (296)
57 TIGR00540 hemY_coli hemY prote 99.8 4.6E-18 1E-22 179.6 35.7 292 386-678 89-396 (409)
58 KOG1915 Cell cycle control pro 99.8 1E-15 2.2E-20 149.7 47.8 439 47-661 84-549 (677)
59 PRK12370 invasion protein regu 99.8 2.1E-18 4.5E-23 189.1 31.7 245 369-616 283-537 (553)
60 KOG1125 TPR repeat-containing 99.8 1.7E-19 3.6E-24 181.4 20.4 258 384-641 288-562 (579)
61 KOG4162 Predicted calmodulin-b 99.8 8.3E-17 1.8E-21 166.9 40.6 326 320-647 409-780 (799)
62 KOG0550 Molecular chaperone (D 99.8 9.2E-19 2E-23 168.4 23.8 275 301-583 45-353 (486)
63 PRK10747 putative protoheme IX 99.8 2E-17 4.4E-22 173.7 36.0 288 346-647 91-387 (398)
64 PRK10747 putative protoheme IX 99.8 2.5E-17 5.5E-22 172.9 36.3 300 304-615 83-391 (398)
65 COG3063 PilF Tfp pilus assembl 99.8 4.4E-18 9.5E-23 151.9 25.1 207 381-587 35-243 (250)
66 PRK11189 lipoprotein NlpI; Pro 99.8 8.2E-18 1.8E-22 169.0 29.0 219 377-599 60-285 (296)
67 KOG1127 TPR repeat-containing 99.8 2E-16 4.4E-21 167.5 39.9 184 462-647 471-656 (1238)
68 TIGR02521 type_IV_pilW type IV 99.8 1E-17 2.3E-22 164.2 28.4 202 379-580 29-232 (234)
69 COG3063 PilF Tfp pilus assembl 99.8 8E-18 1.7E-22 150.2 24.1 204 415-618 35-240 (250)
70 KOG1129 TPR repeat-containing 99.8 7.7E-19 1.7E-23 163.4 17.7 274 312-594 186-472 (478)
71 TIGR02521 type_IV_pilW type IV 99.8 1.2E-17 2.6E-22 163.8 27.6 201 415-615 31-233 (234)
72 COG2956 Predicted N-acetylgluc 99.8 2.6E-16 5.7E-21 146.9 31.5 301 385-689 39-355 (389)
73 KOG1125 TPR repeat-containing 99.8 3.8E-18 8.1E-23 171.7 20.5 257 342-606 288-563 (579)
74 KOG1156 N-terminal acetyltrans 99.8 2.6E-15 5.6E-20 152.9 38.9 110 41-151 12-122 (700)
75 KOG3785 Uncharacterized conser 99.8 9E-16 2E-20 144.7 32.5 452 42-652 28-492 (557)
76 PLN02789 farnesyltranstransfer 99.8 9E-17 1.9E-21 160.4 27.4 209 390-598 46-268 (320)
77 KOG0553 TPR repeat-containing 99.8 1.5E-18 3.2E-23 161.7 13.3 119 32-151 77-196 (304)
78 COG2956 Predicted N-acetylgluc 99.8 1.2E-15 2.5E-20 142.6 31.5 264 312-584 42-315 (389)
79 PLN02789 farnesyltranstransfer 99.8 9.8E-17 2.1E-21 160.1 25.5 220 395-633 34-267 (320)
80 KOG2376 Signal recognition par 99.8 4.2E-14 9.1E-19 142.7 43.2 424 41-650 17-520 (652)
81 KOG1840 Kinesin light chain [C 99.8 6.5E-16 1.4E-20 160.6 28.6 240 373-612 191-477 (508)
82 KOG1840 Kinesin light chain [C 99.7 6.1E-15 1.3E-19 153.4 30.1 237 411-647 195-476 (508)
83 KOG2376 Signal recognition par 99.7 6.6E-13 1.4E-17 134.2 41.0 417 14-609 26-515 (652)
84 cd05804 StaR_like StaR_like; a 99.7 3.1E-14 6.8E-19 149.1 32.8 164 312-480 50-217 (355)
85 KOG1915 Cell cycle control pro 99.7 3E-11 6.6E-16 118.9 49.4 445 57-682 60-537 (677)
86 cd05804 StaR_like StaR_like; a 99.7 1.9E-13 4.1E-18 143.2 33.4 305 377-682 2-337 (355)
87 KOG3785 Uncharacterized conser 99.7 3.3E-13 7.1E-18 127.6 30.5 368 305-676 57-485 (557)
88 PF12569 NARP1: NMDA receptor- 99.7 1.9E-12 4.2E-17 136.8 39.0 131 382-512 195-334 (517)
89 TIGR03302 OM_YfiO outer membra 99.6 4.2E-14 9.1E-19 138.4 22.0 190 376-582 28-234 (235)
90 TIGR03302 OM_YfiO outer membra 99.6 5.8E-14 1.3E-18 137.4 21.7 189 411-616 29-234 (235)
91 PF12569 NARP1: NMDA receptor- 99.6 2E-12 4.3E-17 136.7 33.9 293 381-678 4-331 (517)
92 COG3071 HemY Uncharacterized e 99.6 5.9E-12 1.3E-16 122.1 33.9 297 305-613 84-389 (400)
93 PRK15359 type III secretion sy 99.6 7.7E-14 1.7E-18 123.4 15.5 101 456-556 31-131 (144)
94 PRK15359 type III secretion sy 99.6 5.8E-14 1.3E-18 124.2 14.7 125 470-597 14-138 (144)
95 COG5010 TadD Flp pilus assembl 99.5 1.6E-12 3.6E-17 119.5 21.0 177 434-611 52-228 (257)
96 KOG4648 Uncharacterized conser 99.5 2.2E-14 4.7E-19 134.9 8.3 109 39-148 100-209 (536)
97 PRK10370 formate-dependent nit 99.5 8.6E-13 1.9E-17 123.2 19.0 123 496-618 52-177 (198)
98 KOG3060 Uncharacterized conser 99.5 4.2E-12 9.1E-17 115.3 22.4 174 445-618 48-224 (289)
99 PRK14720 transcript cleavage f 99.5 2.1E-12 4.6E-17 142.2 24.9 209 372-597 22-269 (906)
100 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.8E-15 112.9 33.8 282 351-646 96-386 (400)
101 KOG4234 TPR repeat-containing 99.5 2E-13 4.2E-18 118.8 12.4 114 37-151 96-215 (271)
102 KOG1130 Predicted G-alpha GTPa 99.5 3.6E-13 7.8E-18 129.8 15.4 294 308-603 20-373 (639)
103 PRK10370 formate-dependent nit 99.5 2.3E-12 5.1E-17 120.3 20.5 124 428-551 52-178 (198)
104 KOG3060 Uncharacterized conser 99.5 7.6E-11 1.6E-15 107.3 29.1 180 381-560 52-234 (289)
105 COG5010 TadD Flp pilus assembl 99.5 3.2E-12 6.9E-17 117.6 20.6 181 397-578 49-229 (257)
106 KOG1130 Predicted G-alpha GTPa 99.5 2.8E-13 6E-18 130.6 13.1 283 386-669 22-372 (639)
107 PRK14720 transcript cleavage f 99.5 4.9E-12 1.1E-16 139.4 23.1 206 409-633 25-269 (906)
108 KOG2047 mRNA splicing factor [ 99.5 5.6E-09 1.2E-13 107.0 42.6 523 22-647 52-612 (835)
109 KOG1128 Uncharacterized conser 99.5 2.1E-12 4.5E-17 133.9 18.2 224 377-615 394-617 (777)
110 PRK15179 Vi polysaccharide bio 99.4 2.3E-11 5E-16 133.7 25.7 198 338-553 27-224 (694)
111 KOG0543 FKBP-type peptidyl-pro 99.4 2.1E-12 4.7E-17 126.3 14.8 118 33-151 205-338 (397)
112 PF04733 Coatomer_E: Coatomer 99.4 3.4E-12 7.4E-17 126.1 16.3 256 347-618 9-269 (290)
113 PRK15179 Vi polysaccharide bio 99.4 4E-11 8.7E-16 131.8 25.8 144 442-585 79-222 (694)
114 PF04733 Coatomer_E: Coatomer 99.4 3.9E-12 8.4E-17 125.7 15.5 257 314-587 10-272 (290)
115 KOG4340 Uncharacterized conser 99.4 1.4E-09 3.1E-14 101.0 30.9 419 43-621 17-450 (459)
116 TIGR02552 LcrH_SycD type III s 99.4 1.1E-11 2.4E-16 109.5 15.5 112 472-583 6-117 (135)
117 KOG4340 Uncharacterized conser 99.4 1.4E-10 3E-15 107.6 22.8 286 314-610 19-335 (459)
118 TIGR02552 LcrH_SycD type III s 99.4 1.6E-11 3.4E-16 108.5 15.5 115 403-517 5-119 (135)
119 KOG1128 Uncharacterized conser 99.4 2.4E-11 5.3E-16 126.2 18.3 221 338-581 397-617 (777)
120 PRK04841 transcriptional regul 99.4 2.2E-09 4.7E-14 127.3 37.5 374 305-687 341-766 (903)
121 PLN03088 SGT1, suppressor of 99.4 1.1E-11 2.3E-16 127.5 15.6 111 40-151 6-117 (356)
122 PRK04841 transcriptional regul 99.4 6.4E-09 1.4E-13 123.3 40.7 268 311-615 458-761 (903)
123 KOG2047 mRNA splicing factor [ 99.4 1.9E-07 4.1E-12 96.1 44.5 323 333-667 343-709 (835)
124 PRK15363 pathogenicity island 99.3 5.8E-11 1.3E-15 102.2 15.5 96 43-138 42-138 (157)
125 KOG0553 TPR repeat-containing 99.3 2.8E-11 6E-16 113.6 14.1 118 485-602 83-200 (304)
126 PRK15363 pathogenicity island 99.3 9.2E-11 2E-15 101.0 15.4 102 514-615 32-133 (157)
127 COG4783 Putative Zn-dependent 99.3 2.3E-09 5E-14 107.3 24.2 156 446-618 303-458 (484)
128 COG4783 Putative Zn-dependent 99.2 4.5E-09 9.8E-14 105.3 24.2 154 411-581 302-455 (484)
129 PF13414 TPR_11: TPR repeat; P 99.2 1.3E-10 2.9E-15 88.5 8.6 67 68-134 2-69 (69)
130 PRK10866 outer membrane biogen 99.2 1.1E-08 2.3E-13 98.9 23.3 182 379-577 30-238 (243)
131 PF13525 YfiO: Outer membrane 99.2 7.3E-09 1.6E-13 97.8 21.4 175 379-570 3-197 (203)
132 PLN03088 SGT1, suppressor of 99.1 1E-09 2.2E-14 113.0 16.3 113 384-496 5-117 (356)
133 PF12895 Apc3: Anaphase-promot 99.1 1.9E-10 4E-15 91.5 7.3 81 48-129 1-84 (84)
134 PRK10866 outer membrane biogen 99.1 2.6E-08 5.7E-13 96.2 23.2 183 448-647 31-238 (243)
135 KOG1941 Acetylcholine receptor 99.1 3.4E-08 7.3E-13 94.6 22.9 308 305-614 6-360 (518)
136 KOG4642 Chaperone-dependent E3 99.1 2.4E-10 5.2E-15 102.9 7.5 100 34-133 8-108 (284)
137 PF13525 YfiO: Outer membrane 99.1 1.4E-08 3E-13 95.9 19.9 52 589-640 145-197 (203)
138 KOG0376 Serine-threonine phosp 99.1 2E-10 4.4E-15 114.8 7.5 119 35-154 3-122 (476)
139 PF13432 TPR_16: Tetratricopep 99.1 7E-10 1.5E-14 83.3 7.9 65 73-137 1-65 (65)
140 KOG0551 Hsp90 co-chaperone CNS 99.1 7.2E-10 1.6E-14 104.8 9.4 103 36-138 81-188 (390)
141 COG4235 Cytochrome c biogenesi 99.0 1.1E-08 2.5E-13 97.2 16.2 120 397-516 138-260 (287)
142 PRK02603 photosystem I assembl 99.0 1.1E-08 2.4E-13 94.1 15.7 117 482-618 34-153 (172)
143 COG4785 NlpI Lipoprotein NlpI, 99.0 3.2E-08 6.9E-13 88.0 17.4 198 379-581 63-267 (297)
144 TIGR02795 tol_pal_ybgF tol-pal 99.0 1E-08 2.2E-13 88.2 14.5 104 382-485 3-112 (119)
145 COG4235 Cytochrome c biogenesi 99.0 1.8E-08 4E-13 95.8 17.1 123 499-621 138-263 (287)
146 CHL00033 ycf3 photosystem I as 99.0 9.1E-09 2E-13 94.4 14.5 98 465-562 15-117 (168)
147 KOG0545 Aryl-hydrocarbon recep 99.0 7.9E-09 1.7E-13 93.5 13.3 117 38-154 180-315 (329)
148 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.1E-08 2.4E-13 88.0 14.1 99 486-584 5-109 (119)
149 COG4785 NlpI Lipoprotein NlpI, 99.0 4.5E-08 9.8E-13 87.1 17.6 201 415-621 65-273 (297)
150 COG0457 NrfG FOG: TPR repeat [ 99.0 1.5E-06 3.3E-11 85.3 30.7 224 394-617 36-268 (291)
151 PRK02603 photosystem I assembl 99.0 2.9E-08 6.4E-13 91.3 16.4 121 376-516 30-153 (172)
152 COG0457 NrfG FOG: TPR repeat [ 99.0 3.4E-06 7.4E-11 82.7 32.6 204 380-583 58-268 (291)
153 PF09976 TPR_21: Tetratricopep 99.0 5.2E-08 1.1E-12 86.7 17.1 124 386-510 16-145 (145)
154 KOG1941 Acetylcholine receptor 98.9 2E-07 4.4E-12 89.4 21.4 295 383-678 8-357 (518)
155 PRK11906 transcriptional regul 98.9 6.7E-08 1.4E-12 97.8 19.1 160 384-543 258-433 (458)
156 PRK15331 chaperone protein Sic 98.9 2.6E-08 5.7E-13 86.3 13.8 97 41-138 42-139 (165)
157 PF13414 TPR_11: TPR repeat; P 98.9 4.9E-09 1.1E-13 79.9 8.1 66 551-616 3-69 (69)
158 KOG4648 Uncharacterized conser 98.9 9.8E-10 2.1E-14 104.0 5.1 225 385-618 101-334 (536)
159 KOG3081 Vesicle coat complex C 98.9 1.5E-06 3.3E-11 80.4 25.4 253 347-618 16-275 (299)
160 PF09976 TPR_21: Tetratricopep 98.9 8.5E-08 1.8E-12 85.3 17.3 117 495-612 23-145 (145)
161 PF14938 SNAP: Soluble NSF att 98.9 1.8E-07 3.9E-12 93.5 21.2 98 519-616 116-227 (282)
162 PRK10153 DNA-binding transcrip 98.9 6.9E-08 1.5E-12 103.5 19.0 134 383-517 341-487 (517)
163 CHL00033 ycf3 photosystem I as 98.9 4.5E-08 9.8E-13 89.7 15.2 101 518-618 36-153 (168)
164 cd00189 TPR Tetratricopeptide 98.9 2.1E-08 4.5E-13 82.2 11.8 89 489-577 6-94 (100)
165 KOG0543 FKBP-type peptidyl-pro 98.9 3.2E-08 7E-13 97.4 14.5 153 301-480 204-357 (397)
166 cd00189 TPR Tetratricopeptide 98.9 2.5E-08 5.4E-13 81.7 12.1 97 384-480 3-99 (100)
167 PRK11906 transcriptional regul 98.9 1.6E-07 3.5E-12 95.1 19.7 146 465-610 274-432 (458)
168 KOG1070 rRNA processing protei 98.9 3.3E-07 7.2E-12 102.2 23.5 218 397-615 1440-1664(1710)
169 PRK10153 DNA-binding transcrip 98.9 8.9E-08 1.9E-12 102.6 18.9 141 410-551 332-487 (517)
170 KOG3081 Vesicle coat complex C 98.9 1.8E-06 3.8E-11 80.0 24.4 262 306-587 10-278 (299)
171 PF12895 Apc3: Anaphase-promot 98.9 1E-08 2.3E-13 81.4 8.5 79 531-610 3-83 (84)
172 KOG2053 Mitochondrial inherita 98.9 3.3E-05 7.2E-10 83.4 36.8 124 315-447 19-142 (932)
173 PRK15331 chaperone protein Sic 98.8 7.5E-08 1.6E-12 83.5 13.3 109 374-483 30-138 (165)
174 PF14938 SNAP: Soluble NSF att 98.8 1.9E-07 4E-12 93.4 17.6 193 422-615 42-267 (282)
175 PF13432 TPR_16: Tetratricopep 98.8 1.6E-08 3.5E-13 75.8 7.4 63 386-448 2-64 (65)
176 COG4105 ComL DNA uptake lipopr 98.8 2.3E-06 4.9E-11 79.9 22.0 190 378-584 31-237 (254)
177 PRK10803 tol-pal system protei 98.8 2.8E-07 6.1E-12 89.6 16.7 105 381-485 142-253 (263)
178 KOG4555 TPR repeat-containing 98.8 1.8E-07 3.8E-12 76.1 12.5 124 14-138 22-150 (175)
179 KOG1070 rRNA processing protei 98.8 5E-06 1.1E-10 93.2 27.8 209 371-580 1448-1663(1710)
180 PRK10803 tol-pal system protei 98.8 3.3E-07 7.2E-12 89.1 16.5 102 484-585 143-251 (263)
181 PF13371 TPR_9: Tetratricopept 98.7 6.7E-08 1.5E-12 74.5 8.5 63 76-138 2-64 (73)
182 PF14559 TPR_19: Tetratricopep 98.7 6.7E-08 1.5E-12 73.3 7.6 64 80-144 2-65 (68)
183 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.8E-07 1.3E-11 91.9 16.5 119 422-543 176-294 (395)
184 KOG2471 TPR repeat-containing 98.7 2.5E-05 5.3E-10 78.4 27.1 322 316-646 217-680 (696)
185 COG4105 ComL DNA uptake lipopr 98.7 6.6E-06 1.4E-10 76.8 21.9 189 449-654 34-237 (254)
186 KOG2053 Mitochondrial inherita 98.7 3.8E-05 8.3E-10 82.9 30.1 227 391-618 19-259 (932)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6.3E-07 1.4E-11 91.6 16.3 114 495-611 181-294 (395)
188 KOG3617 WD40 and TPR repeat-co 98.7 5.1E-05 1.1E-09 80.8 30.0 338 317-678 740-1196(1416)
189 PF12688 TPR_5: Tetratrico pep 98.7 7.4E-07 1.6E-11 74.7 13.6 94 451-544 3-102 (120)
190 COG3898 Uncharacterized membra 98.7 0.00012 2.5E-09 71.7 29.8 257 381-647 120-390 (531)
191 COG4700 Uncharacterized protei 98.6 5.7E-06 1.2E-10 72.2 18.2 149 462-612 69-220 (251)
192 PF12688 TPR_5: Tetratrico pep 98.6 1E-06 2.3E-11 73.8 13.3 94 417-510 3-102 (120)
193 COG3898 Uncharacterized membra 98.6 0.00018 3.8E-09 70.5 30.0 286 386-680 89-391 (531)
194 PF13512 TPR_18: Tetratricopep 98.6 6E-07 1.3E-11 76.2 11.7 98 41-138 15-134 (142)
195 KOG3616 Selective LIM binding 98.6 0.00024 5.2E-09 74.8 32.1 287 305-618 661-1028(1636)
196 PF14559 TPR_19: Tetratricopep 98.6 2.1E-07 4.5E-12 70.6 7.7 66 392-457 2-67 (68)
197 COG1729 Uncharacterized protei 98.6 1.4E-06 3.1E-11 82.1 14.7 105 384-488 144-254 (262)
198 KOG1308 Hsp70-interacting prot 98.5 5E-08 1.1E-12 93.3 3.9 102 37-138 115-217 (377)
199 KOG3617 WD40 and TPR repeat-co 98.5 0.00059 1.3E-08 73.0 33.5 83 306-409 913-995 (1416)
200 PF13512 TPR_18: Tetratricopep 98.5 3.1E-06 6.7E-11 72.0 13.6 86 379-464 8-99 (142)
201 COG1729 Uncharacterized protei 98.5 2.5E-06 5.5E-11 80.4 14.3 102 452-553 144-251 (262)
202 KOG4234 TPR repeat-containing 98.5 3.1E-06 6.8E-11 74.6 13.5 111 382-492 96-211 (271)
203 KOG2796 Uncharacterized conser 98.5 0.00022 4.8E-09 66.1 24.7 225 381-618 69-319 (366)
204 PF13371 TPR_9: Tetratricopept 98.5 1.1E-06 2.4E-11 67.7 8.5 59 492-550 4-62 (73)
205 COG4700 Uncharacterized protei 98.4 5.2E-05 1.1E-09 66.3 18.6 150 427-578 68-220 (251)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.5E-06 3.2E-11 88.1 9.2 67 67-133 73-142 (453)
207 PF06552 TOM20_plant: Plant sp 98.3 5.7E-06 1.2E-10 72.6 11.1 97 52-149 7-125 (186)
208 KOG2471 TPR repeat-containing 98.3 4.7E-05 1E-09 76.5 17.4 288 309-597 21-381 (696)
209 KOG1914 mRNA cleavage and poly 98.3 0.0083 1.8E-07 61.8 38.3 116 530-646 379-497 (656)
210 KOG2796 Uncharacterized conser 98.2 0.00048 1E-08 63.9 21.5 186 386-584 127-319 (366)
211 KOG1585 Protein required for f 98.2 0.00074 1.6E-08 62.1 22.1 128 381-508 31-175 (308)
212 KOG4555 TPR repeat-containing 98.2 3.7E-05 7.9E-10 62.9 12.2 97 521-617 47-147 (175)
213 PF13424 TPR_12: Tetratricopep 98.2 4.8E-06 1E-10 65.0 6.9 65 550-614 4-75 (78)
214 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 7.1E-06 1.5E-10 83.3 9.3 70 512-581 70-142 (453)
215 KOG1586 Protein required for f 98.1 0.0004 8.7E-09 63.3 18.6 96 522-617 118-227 (288)
216 PF13424 TPR_12: Tetratricopep 98.1 5.3E-06 1.2E-10 64.7 6.1 64 517-580 5-75 (78)
217 PF07079 DUF1347: Protein of u 98.1 0.013 2.8E-07 59.2 31.0 126 310-444 11-157 (549)
218 PF06552 TOM20_plant: Plant sp 98.1 5.5E-05 1.2E-09 66.5 11.6 87 397-483 7-114 (186)
219 KOG2610 Uncharacterized conser 98.1 0.00061 1.3E-08 65.4 19.3 160 419-578 107-274 (491)
220 KOG2610 Uncharacterized conser 98.1 0.00037 8E-09 66.9 17.7 158 455-612 109-274 (491)
221 PF13431 TPR_17: Tetratricopep 98.0 7.7E-06 1.7E-10 51.3 3.6 32 92-123 2-33 (34)
222 PF10300 DUF3808: Protein of u 98.0 0.012 2.6E-07 63.2 30.2 115 498-612 248-374 (468)
223 PF13428 TPR_14: Tetratricopep 98.0 1.7E-05 3.8E-10 53.5 5.1 42 70-111 2-43 (44)
224 PF13281 DUF4071: Domain of un 98.0 0.0067 1.4E-07 61.4 25.3 128 369-497 129-273 (374)
225 KOG1586 Protein required for f 98.0 0.0011 2.4E-08 60.6 17.6 134 451-585 76-229 (288)
226 PF04184 ST7: ST7 protein; In 97.9 0.0013 2.8E-08 67.2 19.7 188 388-588 175-383 (539)
227 KOG2300 Uncharacterized conser 97.9 0.037 8E-07 56.4 41.7 206 427-636 287-540 (629)
228 KOG3616 Selective LIM binding 97.9 0.014 3.1E-07 62.0 27.2 149 485-644 663-847 (1636)
229 PF04184 ST7: ST7 protein; In 97.9 0.00094 2E-08 68.2 17.7 184 422-618 175-379 (539)
230 KOG4642 Chaperone-dependent E3 97.9 5.3E-05 1.2E-09 69.1 8.0 94 385-478 14-107 (284)
231 PF05843 Suf: Suppressor of fo 97.9 0.00056 1.2E-08 68.1 16.1 131 453-583 5-139 (280)
232 PF00515 TPR_1: Tetratricopept 97.9 2.8E-05 6E-10 49.1 4.4 32 104-135 2-33 (34)
233 PF05843 Suf: Suppressor of fo 97.9 0.0006 1.3E-08 67.9 16.1 136 417-552 3-142 (280)
234 PF00515 TPR_1: Tetratricopept 97.8 3.3E-05 7.2E-10 48.8 4.3 33 70-102 2-34 (34)
235 PF02259 FAT: FAT domain; Int 97.8 0.021 4.4E-07 59.7 27.2 117 481-597 144-304 (352)
236 KOG1585 Protein required for f 97.7 0.0075 1.6E-07 55.7 19.5 29 416-444 32-60 (308)
237 PF07719 TPR_2: Tetratricopept 97.7 7.4E-05 1.6E-09 47.2 5.0 33 104-136 2-34 (34)
238 PF13428 TPR_14: Tetratricopep 97.7 8.4E-05 1.8E-09 50.1 5.3 40 383-422 3-42 (44)
239 KOG1914 mRNA cleavage and poly 97.7 0.088 1.9E-06 54.6 39.5 217 400-616 264-503 (656)
240 KOG0545 Aryl-hydrocarbon recep 97.7 0.00034 7.3E-09 64.2 10.3 120 483-618 178-297 (329)
241 PF02259 FAT: FAT domain; Int 97.7 0.034 7.3E-07 58.0 27.0 120 445-564 142-305 (352)
242 KOG1310 WD40 repeat protein [G 97.7 0.00011 2.4E-09 74.5 7.4 110 29-138 367-480 (758)
243 PF13281 DUF4071: Domain of un 97.6 0.0077 1.7E-07 61.0 20.1 181 415-618 141-338 (374)
244 KOG0530 Protein farnesyltransf 97.6 0.0093 2E-07 55.7 18.5 204 392-595 54-269 (318)
245 KOG0376 Serine-threonine phosp 97.6 0.00011 2.3E-09 74.6 6.3 107 386-492 9-115 (476)
246 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0004 8.6E-09 66.8 9.7 109 300-446 76-184 (390)
247 PF07719 TPR_2: Tetratricopept 97.6 0.00015 3.4E-09 45.7 4.8 33 70-102 2-34 (34)
248 KOG4507 Uncharacterized conser 97.6 0.0039 8.4E-08 64.6 16.5 111 372-482 204-316 (886)
249 PF13431 TPR_17: Tetratricopep 97.5 8.9E-05 1.9E-09 46.4 3.1 31 574-604 2-32 (34)
250 COG3118 Thioredoxin domain-con 97.5 0.011 2.3E-07 56.8 18.2 150 380-531 133-286 (304)
251 PF10345 Cohesin_load: Cohesin 97.5 0.27 5.8E-06 55.3 32.9 290 380-670 58-467 (608)
252 KOG0530 Protein farnesyltransf 97.4 0.081 1.7E-06 49.7 22.0 122 319-448 57-180 (318)
253 KOG0985 Vesicle coat protein c 97.4 0.081 1.8E-06 58.8 25.0 144 380-543 1103-1246(1666)
254 KOG2300 Uncharacterized conser 97.4 0.2 4.3E-06 51.4 38.2 354 311-675 94-550 (629)
255 COG2976 Uncharacterized protei 97.4 0.0028 6.1E-08 56.6 11.8 100 37-138 89-194 (207)
256 KOG1550 Extracellular protein 97.4 0.078 1.7E-06 58.4 25.7 260 380-652 243-540 (552)
257 COG3118 Thioredoxin domain-con 97.4 0.014 3.1E-07 56.0 17.0 125 490-615 141-266 (304)
258 COG2909 MalT ATP-dependent tra 97.4 0.26 5.6E-06 54.7 28.1 232 380-611 414-685 (894)
259 PF13181 TPR_8: Tetratricopept 97.3 0.00044 9.6E-09 43.5 4.6 33 104-136 2-34 (34)
260 COG2909 MalT ATP-dependent tra 97.3 0.4 8.7E-06 53.2 30.0 231 415-645 415-684 (894)
261 PF10300 DUF3808: Protein of u 97.3 0.012 2.5E-07 63.3 17.8 152 495-647 200-373 (468)
262 PF08631 SPO22: Meiosis protei 97.3 0.23 5E-06 49.5 26.1 123 392-514 4-152 (278)
263 COG2976 Uncharacterized protei 97.2 0.041 8.9E-07 49.4 16.4 117 501-618 70-192 (207)
264 PF12968 DUF3856: Domain of Un 97.2 0.011 2.5E-07 47.8 11.5 96 36-131 9-128 (144)
265 COG0790 FOG: TPR repeat, SEL1 97.2 0.29 6.2E-06 49.4 25.3 166 391-565 51-236 (292)
266 KOG0890 Protein kinase of the 97.1 0.55 1.2E-05 57.8 29.7 122 3-126 1415-1541(2382)
267 KOG1550 Extracellular protein 97.1 0.13 2.7E-06 56.9 23.6 175 397-579 228-425 (552)
268 COG0790 FOG: TPR repeat, SEL1 97.1 0.16 3.5E-06 51.3 22.9 184 426-618 52-270 (292)
269 PF07079 DUF1347: Protein of u 97.0 0.48 1E-05 48.4 39.6 84 46-129 16-105 (549)
270 PF03704 BTAD: Bacterial trans 97.0 0.016 3.5E-07 51.5 13.1 59 451-509 64-122 (146)
271 PF03704 BTAD: Bacterial trans 97.0 0.025 5.4E-07 50.2 14.1 57 521-577 66-122 (146)
272 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.003 6.5E-08 43.9 6.2 37 72-108 4-40 (53)
273 PF13181 TPR_8: Tetratricopept 97.0 0.0013 2.9E-08 41.3 4.0 33 70-102 2-34 (34)
274 KOG0890 Protein kinase of the 96.9 0.75 1.6E-05 56.7 28.2 334 310-659 1388-1796(2382)
275 KOG1308 Hsp70-interacting prot 96.9 0.00093 2E-08 64.8 3.9 94 387-480 120-213 (377)
276 KOG1258 mRNA processing protei 96.9 0.83 1.8E-05 48.6 34.4 169 484-652 298-472 (577)
277 PF08631 SPO22: Meiosis protei 96.8 0.61 1.3E-05 46.5 28.1 130 316-480 4-152 (278)
278 PF08424 NRDE-2: NRDE-2, neces 96.8 0.13 2.8E-06 52.4 19.0 115 501-615 49-184 (321)
279 KOG4507 Uncharacterized conser 96.8 0.0078 1.7E-07 62.4 9.8 91 48-138 619-711 (886)
280 PF08424 NRDE-2: NRDE-2, neces 96.8 0.21 4.6E-06 50.9 20.4 164 402-581 6-184 (321)
281 KOG1258 mRNA processing protei 96.7 1.1 2.3E-05 47.9 30.6 122 518-641 298-420 (577)
282 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.013 2.9E-07 40.7 7.5 47 104-151 2-48 (53)
283 PRK10941 hypothetical protein; 96.7 0.019 4.2E-07 55.9 11.3 67 72-138 184-250 (269)
284 PF13174 TPR_6: Tetratricopept 96.7 0.0033 7.1E-08 39.1 4.0 31 105-135 2-32 (33)
285 PF04910 Tcf25: Transcriptiona 96.6 0.078 1.7E-06 54.6 16.1 169 374-550 33-226 (360)
286 PF04910 Tcf25: Transcriptiona 96.4 0.18 4E-06 51.9 17.3 169 408-584 33-226 (360)
287 PF13174 TPR_6: Tetratricopept 96.4 0.0074 1.6E-07 37.4 4.4 32 71-102 2-33 (33)
288 PF09613 HrpB1_HrpK: Bacterial 96.4 0.15 3.2E-06 44.8 13.5 80 521-600 14-93 (160)
289 KOG3824 Huntingtin interacting 96.3 0.0096 2.1E-07 56.8 6.5 66 73-138 120-185 (472)
290 KOG0546 HSP90 co-chaperone CPR 96.3 0.0052 1.1E-07 60.1 4.9 110 41-151 227-356 (372)
291 PF13176 TPR_7: Tetratricopept 96.3 0.0092 2E-07 38.0 4.4 29 105-133 1-29 (36)
292 KOG2041 WD40 repeat protein [G 96.3 0.33 7.2E-06 51.9 17.7 188 397-610 679-877 (1189)
293 PF10345 Cohesin_load: Cohesin 96.2 2.9 6.4E-05 47.0 44.2 90 48-138 72-176 (608)
294 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.1 2.5E-05 45.6 20.3 214 402-618 289-535 (660)
295 COG4976 Predicted methyltransf 96.2 0.0069 1.5E-07 55.3 4.6 62 77-138 3-64 (287)
296 KOG4151 Myosin assembly protei 96.2 0.02 4.3E-07 62.2 8.8 124 27-151 44-174 (748)
297 COG3914 Spy Predicted O-linked 96.0 0.42 9E-06 50.5 17.1 125 468-592 50-183 (620)
298 PF09613 HrpB1_HrpK: Bacterial 95.9 0.15 3.3E-06 44.7 11.5 84 382-465 11-94 (160)
299 PRK13184 pknD serine/threonine 95.9 2.9 6.2E-05 48.6 24.6 93 45-138 484-587 (932)
300 smart00028 TPR Tetratricopepti 95.8 0.015 3.2E-07 35.5 3.9 31 105-135 3-33 (34)
301 PRK15180 Vi polysaccharide bio 95.8 2.7 5.9E-05 43.3 23.0 49 313-361 297-345 (831)
302 PF04781 DUF627: Protein of un 95.8 0.14 3E-06 41.6 9.9 103 387-512 2-107 (111)
303 PF15015 NYD-SP12_N: Spermatog 95.7 0.052 1.1E-06 54.3 8.6 89 41-129 181-288 (569)
304 PF13176 TPR_7: Tetratricopept 95.7 0.022 4.9E-07 36.1 4.1 25 588-612 2-26 (36)
305 smart00028 TPR Tetratricopepti 95.6 0.023 4.9E-07 34.6 4.1 33 70-102 2-34 (34)
306 PF04781 DUF627: Protein of un 95.6 0.14 3.1E-06 41.6 9.3 44 536-579 63-106 (111)
307 KOG1538 Uncharacterized conser 95.5 0.89 1.9E-05 48.4 17.1 85 584-678 746-830 (1081)
308 PRK13184 pknD serine/threonine 95.5 6.6 0.00014 45.7 29.7 351 308-674 478-893 (932)
309 KOG2041 WD40 repeat protein [G 95.5 4.5 9.8E-05 43.8 23.9 79 382-472 797-875 (1189)
310 KOG1464 COP9 signalosome, subu 95.5 1.6 3.5E-05 41.4 17.0 50 394-443 40-93 (440)
311 KOG3783 Uncharacterized conser 95.5 0.91 2E-05 47.7 16.8 66 553-618 451-524 (546)
312 PF14561 TPR_20: Tetratricopep 95.4 0.12 2.7E-06 40.9 8.4 48 89-136 8-55 (90)
313 KOG2396 HAT (Half-A-TPR) repea 95.4 4.2 9.2E-05 42.4 37.0 94 56-150 91-186 (568)
314 PRK10941 hypothetical protein; 95.3 0.21 4.6E-06 48.8 11.5 73 485-557 183-255 (269)
315 KOG3824 Huntingtin interacting 95.2 0.071 1.5E-06 51.1 7.5 74 385-458 120-193 (472)
316 PF14561 TPR_20: Tetratricopep 95.2 0.25 5.5E-06 39.2 9.5 42 506-547 11-52 (90)
317 KOG1464 COP9 signalosome, subu 95.2 1.8 3.8E-05 41.1 16.3 192 318-512 40-260 (440)
318 KOG1463 26S proteasome regulat 95.2 3.7 8E-05 40.6 21.1 273 385-659 8-325 (411)
319 KOG4814 Uncharacterized conser 95.0 0.63 1.4E-05 49.5 14.1 93 41-133 359-458 (872)
320 KOG3783 Uncharacterized conser 95.0 6 0.00013 41.9 20.9 81 432-514 250-334 (546)
321 COG5159 RPN6 26S proteasome re 94.9 3.8 8.2E-05 39.4 20.8 265 385-652 7-316 (421)
322 COG3914 Spy Predicted O-linked 94.9 1.4 3.1E-05 46.7 16.4 133 400-532 50-191 (620)
323 PRK15180 Vi polysaccharide bio 94.6 0.21 4.5E-06 51.0 9.3 122 461-582 301-422 (831)
324 TIGR02561 HrpB1_HrpK type III 94.5 1.2 2.6E-05 38.5 12.3 85 563-649 22-106 (153)
325 KOG0985 Vesicle coat protein c 94.5 11 0.00025 42.9 41.6 240 303-571 1102-1374(1666)
326 TIGR02561 HrpB1_HrpK type III 94.4 0.62 1.3E-05 40.2 10.4 82 384-465 13-94 (153)
327 COG5159 RPN6 26S proteasome re 94.4 5.2 0.00011 38.5 19.2 201 309-512 7-235 (421)
328 KOG3364 Membrane protein invol 94.2 0.23 5E-06 41.7 7.1 85 66-151 29-118 (149)
329 COG4649 Uncharacterized protei 94.2 3.9 8.4E-05 36.3 16.3 119 427-545 70-195 (221)
330 KOG3364 Membrane protein invol 94.1 0.95 2.1E-05 38.2 10.5 66 48-113 47-115 (149)
331 PF12968 DUF3856: Domain of Un 94.1 2.8 6.1E-05 34.5 13.0 92 386-477 14-128 (144)
332 PF09986 DUF2225: Uncharacteri 94.1 1.1 2.3E-05 42.5 12.5 66 379-444 116-194 (214)
333 KOG1310 WD40 repeat protein [G 93.9 0.29 6.2E-06 50.8 8.7 86 533-618 390-478 (758)
334 PF10602 RPN7: 26S proteasome 93.8 0.98 2.1E-05 41.3 11.4 98 518-615 37-143 (177)
335 KOG1538 Uncharacterized conser 93.6 6.7 0.00015 42.2 18.0 176 386-577 637-830 (1081)
336 PF10602 RPN7: 26S proteasome 93.5 1.4 3E-05 40.3 11.9 94 451-544 38-140 (177)
337 PF09986 DUF2225: Uncharacteri 93.5 1 2.2E-05 42.5 11.4 67 551-617 118-197 (214)
338 COG4976 Predicted methyltransf 93.5 0.15 3.2E-06 47.0 5.2 58 527-584 5-62 (287)
339 KOG2422 Uncharacterized conser 93.3 5.8 0.00013 42.2 16.9 35 374-408 277-311 (665)
340 KOG1839 Uncharacterized protei 93.2 0.64 1.4E-05 54.1 10.9 175 303-477 930-1127(1236)
341 KOG4814 Uncharacterized conser 92.9 1.2 2.6E-05 47.5 11.5 97 382-478 355-457 (872)
342 COG4649 Uncharacterized protei 92.9 6.6 0.00014 34.9 16.5 143 384-527 61-210 (221)
343 KOG1839 Uncharacterized protei 92.8 1.3 2.9E-05 51.6 12.7 132 381-512 932-1086(1236)
344 PF04053 Coatomer_WDAD: Coatom 92.8 4.6 0.0001 43.0 16.1 45 392-441 329-373 (443)
345 PF07720 TPR_3: Tetratricopept 91.9 0.59 1.3E-05 29.5 4.9 33 104-136 2-36 (36)
346 COG5191 Uncharacterized conser 91.7 0.35 7.5E-06 46.7 5.4 84 439-522 97-181 (435)
347 KOG2422 Uncharacterized conser 91.6 17 0.00036 39.0 17.7 155 394-549 251-451 (665)
348 COG3629 DnrI DNA-binding trans 91.4 2.9 6.3E-05 40.9 11.5 61 72-132 156-216 (280)
349 KOG1463 26S proteasome regulat 91.3 17 0.00036 36.2 21.4 269 311-582 10-318 (411)
350 PF13374 TPR_10: Tetratricopep 91.3 0.5 1.1E-05 30.8 4.6 30 104-133 3-32 (42)
351 KOG0529 Protein geranylgeranyl 91.1 8.3 0.00018 39.4 14.5 147 393-561 40-193 (421)
352 PF04053 Coatomer_WDAD: Coatom 90.9 5 0.00011 42.7 13.8 133 457-614 269-402 (443)
353 PF07721 TPR_4: Tetratricopept 90.9 0.37 8E-06 27.8 3.1 24 104-127 2-25 (26)
354 PF13374 TPR_10: Tetratricopep 90.8 0.5 1.1E-05 30.8 4.2 30 70-99 3-32 (42)
355 COG5191 Uncharacterized conser 90.7 0.55 1.2E-05 45.4 5.7 86 404-489 96-182 (435)
356 COG2912 Uncharacterized conser 90.7 1.9 4.1E-05 41.6 9.3 67 72-138 184-250 (269)
357 PF10516 SHNi-TPR: SHNi-TPR; 90.7 0.57 1.2E-05 30.0 4.0 30 104-133 2-31 (38)
358 KOG0529 Protein geranylgeranyl 90.7 11 0.00023 38.7 14.8 97 431-527 91-193 (421)
359 PF10579 Rapsyn_N: Rapsyn N-te 90.6 1.8 3.9E-05 32.7 7.2 57 41-97 11-71 (80)
360 KOG2581 26S proteasome regulat 90.2 21 0.00046 36.4 16.3 124 460-583 137-279 (493)
361 COG1747 Uncharacterized N-term 90.2 27 0.00059 36.9 22.8 202 377-583 62-291 (711)
362 PF12862 Apc5: Anaphase-promot 90.0 1.6 3.4E-05 35.1 7.2 60 79-138 8-76 (94)
363 PF12862 Apc5: Anaphase-promot 89.8 2 4.2E-05 34.5 7.6 60 44-103 6-75 (94)
364 KOG3807 Predicted membrane pro 89.6 23 0.00049 35.0 16.6 140 386-538 189-332 (556)
365 COG5107 RNA14 Pre-mRNA 3'-end 89.2 30 0.00066 35.9 38.1 206 437-645 290-526 (660)
366 PF15015 NYD-SP12_N: Spermatog 88.5 3 6.6E-05 42.3 9.2 91 386-476 181-289 (569)
367 PF10516 SHNi-TPR: SHNi-TPR; 88.4 1 2.2E-05 28.8 3.9 30 70-99 2-31 (38)
368 PF11207 DUF2989: Protein of u 88.3 9.7 0.00021 35.1 11.6 73 430-503 121-198 (203)
369 COG2912 Uncharacterized conser 88.3 3.3 7.1E-05 40.0 9.0 66 489-554 187-252 (269)
370 KOG2581 26S proteasome regulat 88.1 34 0.00073 35.1 18.7 129 389-517 134-281 (493)
371 PF04190 DUF410: Protein of un 87.9 29 0.00062 34.1 21.2 25 482-506 89-113 (260)
372 COG1747 Uncharacterized N-term 87.8 40 0.00087 35.7 22.4 202 412-618 63-292 (711)
373 KOG0128 RNA-binding protein SA 87.4 56 0.0012 36.8 28.9 258 319-586 93-382 (881)
374 PF10579 Rapsyn_N: Rapsyn N-te 86.8 8 0.00017 29.4 8.3 60 384-443 9-71 (80)
375 PF04190 DUF410: Protein of un 86.1 36 0.00078 33.4 19.5 199 384-600 13-243 (260)
376 KOG0546 HSP90 co-chaperone CPR 86.1 1 2.2E-05 44.7 4.4 133 303-458 220-352 (372)
377 PF07720 TPR_3: Tetratricopept 86.0 2.9 6.4E-05 26.4 5.0 18 386-403 6-23 (36)
378 PF07721 TPR_4: Tetratricopept 85.7 1.2 2.6E-05 25.6 2.9 21 588-608 4-24 (26)
379 COG3629 DnrI DNA-binding trans 85.4 5 0.00011 39.3 8.7 64 381-444 153-216 (280)
380 PF14863 Alkyl_sulf_dimr: Alky 85.2 3.7 8E-05 35.7 7.0 54 68-121 69-122 (141)
381 PF11207 DUF2989: Protein of u 85.0 6.5 0.00014 36.2 8.7 71 51-122 121-197 (203)
382 PF11817 Foie-gras_1: Foie gra 84.9 40 0.00087 32.8 16.4 23 522-544 183-205 (247)
383 COG3947 Response regulator con 84.8 2.8 6.1E-05 40.5 6.5 57 73-129 283-339 (361)
384 PF11817 Foie-gras_1: Foie gra 84.7 37 0.00079 33.1 14.6 25 385-409 14-38 (247)
385 PRK11619 lytic murein transgly 84.0 82 0.0018 35.7 38.2 246 392-647 110-372 (644)
386 COG4941 Predicted RNA polymera 83.9 12 0.00025 37.2 10.3 92 47-138 307-400 (415)
387 TIGR03504 FimV_Cterm FimV C-te 83.4 2.1 4.6E-05 28.5 3.6 25 73-97 3-27 (44)
388 PRK11619 lytic murein transgly 83.2 88 0.0019 35.4 33.5 262 376-643 124-461 (644)
389 COG4455 ImpE Protein of avirul 83.0 12 0.00027 34.7 9.4 63 77-139 9-71 (273)
390 PF09670 Cas_Cas02710: CRISPR- 82.4 27 0.00059 36.5 13.4 61 384-444 134-198 (379)
391 KOG4014 Uncharacterized conser 82.2 38 0.00083 30.6 15.6 184 380-580 33-233 (248)
392 KOG2396 HAT (Half-A-TPR) repea 82.0 75 0.0016 33.8 33.2 90 323-420 89-179 (568)
393 PF13041 PPR_2: PPR repeat fam 81.8 4.3 9.3E-05 27.8 5.0 37 41-77 8-46 (50)
394 PF10373 EST1_DNA_bind: Est1 D 80.1 6.8 0.00015 39.0 8.0 62 502-563 1-62 (278)
395 COG3947 Response regulator con 80.0 28 0.0006 34.0 11.0 58 384-441 282-339 (361)
396 PF12739 TRAPPC-Trs85: ER-Golg 79.6 87 0.0019 33.3 16.3 29 384-412 211-239 (414)
397 KOG2114 Vacuolar assembly/sort 79.2 75 0.0016 36.0 15.3 112 342-467 337-449 (933)
398 PF10255 Paf67: RNA polymerase 79.0 8.2 0.00018 40.1 8.0 58 73-130 126-191 (404)
399 PF12739 TRAPPC-Trs85: ER-Golg 78.9 91 0.002 33.2 16.2 29 417-445 210-238 (414)
400 PF10373 EST1_DNA_bind: Est1 D 78.8 7.7 0.00017 38.6 7.8 62 468-529 1-62 (278)
401 PF00244 14-3-3: 14-3-3 protei 78.1 68 0.0015 30.9 14.5 46 568-613 143-197 (236)
402 KOG2063 Vacuolar assembly/sort 77.9 1.5E+02 0.0031 34.6 18.5 110 384-493 507-636 (877)
403 KOG2114 Vacuolar assembly/sort 77.9 66 0.0014 36.4 14.5 111 457-574 342-454 (933)
404 PF10255 Paf67: RNA polymerase 75.6 26 0.00057 36.5 10.5 58 488-545 127-192 (404)
405 PF09670 Cas_Cas02710: CRISPR- 75.6 72 0.0016 33.4 14.0 60 453-512 135-198 (379)
406 KOG0128 RNA-binding protein SA 74.5 1.6E+02 0.0035 33.5 32.6 235 404-643 301-556 (881)
407 TIGR03504 FimV_Cterm FimV C-te 74.3 5.5 0.00012 26.5 3.4 30 106-136 2-31 (44)
408 KOG4014 Uncharacterized conser 73.2 73 0.0016 28.9 15.2 97 413-512 32-141 (248)
409 smart00386 HAT HAT (Half-A-TPR 72.1 11 0.00023 22.5 4.5 28 395-422 1-28 (33)
410 KOG0276 Vesicle coat complex C 71.6 1.1E+02 0.0024 33.3 13.7 45 392-441 648-692 (794)
411 smart00386 HAT HAT (Half-A-TPR 71.6 10 0.00022 22.6 4.2 24 533-556 3-26 (33)
412 PF12854 PPR_1: PPR repeat 71.4 9.5 0.00021 23.6 3.9 25 551-575 7-31 (34)
413 PF13041 PPR_2: PPR repeat fam 70.6 19 0.00042 24.4 5.9 25 554-578 6-30 (50)
414 PF14863 Alkyl_sulf_dimr: Alky 70.2 20 0.00042 31.3 6.9 52 381-432 70-121 (141)
415 KOG3807 Predicted membrane pro 70.2 1.2E+02 0.0026 30.2 17.2 154 411-577 180-337 (556)
416 PF12854 PPR_1: PPR repeat 69.7 12 0.00025 23.2 4.1 26 585-610 7-32 (34)
417 PHA02537 M terminase endonucle 69.3 8.9 0.00019 36.4 5.0 92 47-138 94-213 (230)
418 COG4455 ImpE Protein of avirul 67.1 39 0.00084 31.6 8.3 58 493-550 11-68 (273)
419 COG5536 BET4 Protein prenyltra 66.0 1E+02 0.0022 30.1 11.0 128 466-593 91-235 (328)
420 smart00299 CLH Clathrin heavy 65.2 91 0.002 26.9 15.0 32 463-494 21-52 (140)
421 COG5536 BET4 Protein prenyltra 62.9 1.4E+02 0.003 29.3 11.3 162 399-560 50-236 (328)
422 KOG0276 Vesicle coat complex C 62.8 95 0.0021 33.8 11.3 46 494-544 648-693 (794)
423 PF09797 NatB_MDM20: N-acetylt 62.7 48 0.001 34.6 9.6 109 467-575 201-310 (365)
424 PF02064 MAS20: MAS20 protein 62.5 35 0.00076 28.7 6.7 38 35-72 62-99 (121)
425 COG4941 Predicted RNA polymera 62.3 1.8E+02 0.0039 29.3 18.2 188 396-592 211-406 (415)
426 PF10938 YfdX: YfdX protein; 61.7 36 0.00078 30.3 7.1 65 33-97 72-145 (155)
427 KOG1497 COP9 signalosome, subu 61.3 1.8E+02 0.0038 29.1 11.9 106 28-134 94-215 (399)
428 PF02184 HAT: HAT (Half-A-TPR) 61.2 17 0.00037 22.2 3.3 27 51-77 2-28 (32)
429 cd02682 MIT_AAA_Arch MIT: doma 58.8 35 0.00075 25.9 5.5 17 88-104 32-48 (75)
430 KOG2063 Vacuolar assembly/sort 58.4 2.3E+02 0.0049 33.1 14.1 162 452-613 507-712 (877)
431 KOG4279 Serine/threonine prote 58.0 1.9E+02 0.0041 32.5 12.6 125 371-497 191-334 (1226)
432 PF11846 DUF3366: Domain of un 56.4 43 0.00093 31.1 7.2 53 83-136 125-177 (193)
433 TIGR02710 CRISPR-associated pr 56.1 2.6E+02 0.0056 29.2 13.2 55 386-440 135-196 (380)
434 PF15469 Sec5: Exocyst complex 55.5 1.7E+02 0.0036 26.8 11.8 26 41-66 91-116 (182)
435 KOG0686 COP9 signalosome, subu 54.3 2E+02 0.0044 29.8 11.5 94 485-578 152-256 (466)
436 PF04097 Nic96: Nup93/Nic96; 53.7 3.8E+02 0.0081 30.3 17.2 83 388-475 265-353 (613)
437 KOG0686 COP9 signalosome, subu 53.2 2.8E+02 0.0062 28.8 14.3 95 518-612 151-256 (466)
438 PF10952 DUF2753: Protein of u 52.9 61 0.0013 27.2 6.3 93 41-138 6-118 (140)
439 PF02064 MAS20: MAS20 protein 52.8 38 0.00082 28.5 5.4 39 105-144 65-103 (121)
440 PF01535 PPR: PPR repeat; Int 52.2 22 0.00047 20.8 3.1 17 559-575 8-24 (31)
441 PRK12798 chemotaxis protein; R 51.9 3.1E+02 0.0066 28.8 23.3 205 406-611 102-321 (421)
442 KOG4279 Serine/threonine prote 51.7 63 0.0014 35.9 8.0 116 414-531 200-334 (1226)
443 PF01239 PPTA: Protein prenylt 50.9 47 0.001 19.8 4.3 29 88-116 2-30 (31)
444 PF09205 DUF1955: Domain of un 50.8 90 0.002 26.7 7.1 51 564-614 99-149 (161)
445 cd02680 MIT_calpain7_2 MIT: do 50.7 32 0.0007 26.1 4.2 17 48-64 18-34 (75)
446 COG5187 RPN7 26S proteasome re 49.9 2.7E+02 0.0058 27.5 15.1 101 415-515 115-224 (412)
447 smart00299 CLH Clathrin heavy 49.1 1.7E+02 0.0038 25.1 14.7 32 429-460 21-52 (140)
448 PF00244 14-3-3: 14-3-3 protei 47.2 2.7E+02 0.0059 26.8 16.0 60 384-443 4-65 (236)
449 TIGR00756 PPR pentatricopeptid 45.4 42 0.0009 20.0 3.7 22 556-577 5-26 (35)
450 PF10952 DUF2753: Protein of u 45.1 1.3E+02 0.0028 25.3 7.0 57 556-612 6-77 (140)
451 cd02682 MIT_AAA_Arch MIT: doma 45.0 1.3E+02 0.0029 22.8 6.7 26 384-409 9-34 (75)
452 PF09205 DUF1955: Domain of un 44.8 2E+02 0.0044 24.7 9.3 27 312-338 9-35 (161)
453 PF04090 RNA_pol_I_TF: RNA pol 44.6 2.7E+02 0.0058 26.0 10.9 24 459-482 51-74 (199)
454 TIGR02710 CRISPR-associated pr 44.3 3.9E+02 0.0085 27.8 13.1 18 563-580 258-275 (380)
455 PF11846 DUF3366: Domain of un 43.2 81 0.0018 29.2 6.8 47 399-446 129-175 (193)
456 cd02680 MIT_calpain7_2 MIT: do 42.6 19 0.00042 27.2 2.0 13 52-64 3-15 (75)
457 cd02677 MIT_SNX15 MIT: domain 42.3 40 0.00087 25.6 3.7 12 54-65 5-16 (75)
458 PHA02537 M terminase endonucle 42.2 1E+02 0.0022 29.4 7.1 27 313-339 91-117 (230)
459 PF07304 SRA1: Steroid recepto 41.8 64 0.0014 28.8 5.5 57 3-66 64-120 (157)
460 PF04212 MIT: MIT (microtubule 40.0 68 0.0015 23.7 4.6 19 46-64 15-33 (69)
461 cd02683 MIT_1 MIT: domain cont 39.8 50 0.0011 25.2 3.9 19 46-64 16-34 (77)
462 cd02681 MIT_calpain7_1 MIT: do 39.6 62 0.0013 24.6 4.3 23 42-64 12-34 (76)
463 KOG4151 Myosin assembly protei 39.4 97 0.0021 34.9 7.4 108 420-527 58-171 (748)
464 PF04840 Vps16_C: Vps16, C-ter 39.4 4.3E+02 0.0093 26.9 22.4 98 526-642 186-283 (319)
465 PF13226 DUF4034: Domain of un 39.0 3.5E+02 0.0075 26.8 10.4 135 388-534 7-150 (277)
466 PF13812 PPR_3: Pentatricopept 38.1 76 0.0017 18.9 4.0 25 588-612 4-28 (34)
467 KOG2758 Translation initiation 38.1 4.3E+02 0.0094 26.5 24.2 184 435-618 115-321 (432)
468 PF07219 HemY_N: HemY protein 37.9 1.5E+02 0.0033 24.3 6.9 49 382-430 60-108 (108)
469 KOG2062 26S proteasome regulat 37.5 6.7E+02 0.014 28.5 14.3 178 393-575 369-561 (929)
470 TIGR00985 3a0801s04tom mitocho 36.9 2.2E+02 0.0048 25.0 7.7 38 35-72 89-127 (148)
471 cd02683 MIT_1 MIT: domain cont 36.0 2E+02 0.0043 22.0 7.4 23 386-408 11-33 (77)
472 cd02677 MIT_SNX15 MIT: domain 35.6 59 0.0013 24.7 3.6 14 117-130 20-33 (75)
473 KOG0567 HEAT repeat-containing 35.1 4.4E+02 0.0095 25.8 15.1 197 394-613 62-261 (289)
474 PRK15490 Vi polysaccharide bio 34.9 4.1E+02 0.009 29.4 11.1 85 47-136 19-104 (578)
475 PF10475 DUF2450: Protein of u 34.2 4.9E+02 0.011 26.0 13.3 104 26-129 117-223 (291)
476 TIGR03362 VI_chp_7 type VI sec 34.2 5E+02 0.011 26.1 16.3 169 300-478 95-279 (301)
477 TIGR00985 3a0801s04tom mitocho 33.9 99 0.0021 27.1 5.2 33 106-138 93-126 (148)
478 COG5187 RPN7 26S proteasome re 33.0 5E+02 0.011 25.7 16.1 101 449-549 115-224 (412)
479 PRK12798 chemotaxis protein; R 32.5 6.2E+02 0.013 26.7 23.7 232 410-649 79-323 (421)
480 PF04212 MIT: MIT (microtubule 32.0 95 0.002 22.9 4.3 24 107-130 9-32 (69)
481 KOG3677 RNA polymerase I-assoc 31.9 6.2E+02 0.013 26.5 13.1 24 521-544 276-299 (525)
482 PF04348 LppC: LppC putative l 31.6 16 0.00034 40.3 0.0 101 378-478 21-127 (536)
483 PF13226 DUF4034: Domain of un 31.3 5.3E+02 0.012 25.6 10.5 134 423-568 8-150 (277)
484 PRK15490 Vi polysaccharide bio 30.5 3.9E+02 0.0085 29.6 10.1 69 370-440 31-99 (578)
485 smart00745 MIT Microtubule Int 30.3 94 0.002 23.5 4.2 17 48-64 20-36 (77)
486 KOG1920 IkappaB kinase complex 30.1 1.1E+03 0.023 28.7 19.0 253 395-681 771-1028(1265)
487 cd02678 MIT_VPS4 MIT: domain c 29.9 1.1E+02 0.0023 23.2 4.3 21 44-64 14-34 (75)
488 PF06957 COPI_C: Coatomer (COP 29.8 1E+02 0.0022 32.4 5.5 28 308-335 207-234 (422)
489 smart00671 SEL1 Sel1-like repe 29.2 1.3E+02 0.0029 18.1 4.1 28 104-131 2-33 (36)
490 KOG0687 26S proteasome regulat 29.1 6.2E+02 0.013 25.6 13.9 99 449-547 104-211 (393)
491 KOG3677 RNA polymerase I-assoc 29.0 2E+02 0.0043 29.9 7.0 54 73-130 239-299 (525)
492 PF10607 CLTH: CTLH/CRA C-term 28.9 3.8E+02 0.0083 23.2 9.0 60 37-96 2-67 (145)
493 KOG1114 Tripeptidyl peptidase 28.7 1E+03 0.022 28.1 14.6 53 297-349 1067-1119(1304)
494 KOG2561 Adaptor protein NUB1, 28.5 2.7E+02 0.0058 29.2 7.8 26 587-612 269-294 (568)
495 KOG2561 Adaptor protein NUB1, 28.4 3.4E+02 0.0074 28.5 8.5 26 452-477 166-191 (568)
496 PF04348 LppC: LppC putative l 28.1 19 0.00042 39.5 0.0 112 401-512 9-127 (536)
497 cd02681 MIT_calpain7_1 MIT: do 28.0 1.1E+02 0.0025 23.2 4.1 22 109-130 12-33 (76)
498 KOG2659 LisH motif-containing 27.9 4.1E+02 0.0088 25.3 8.4 66 32-97 60-131 (228)
499 KOG0292 Vesicle coat complex C 27.8 9E+02 0.019 28.2 12.1 186 311-505 912-1140(1202)
500 cd02679 MIT_spastin MIT: domai 27.7 1.2E+02 0.0025 23.4 4.1 22 110-131 15-36 (79)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-45 Score=365.87 Aligned_cols=463 Identities=16% Similarity=0.127 Sum_probs=301.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 004622 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (741)
Q Consensus 42 ~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~ 120 (741)
.+-+.|+.|||++|.+.....-..+ .+.....-++.++++..+++....--..+++.+|...++|-.+|.++...|+++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 3457899999999999999987777 555556778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCccccc
Q 004622 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (741)
Q Consensus 121 ~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (741)
+|+..|+.+++++|++.+ +...+
T Consensus 134 ~al~~y~~aiel~p~fid-a~inl-------------------------------------------------------- 156 (966)
T KOG4626|consen 134 DALALYRAAIELKPKFID-AYINL-------------------------------------------------------- 156 (966)
T ss_pred HHHHHHHHHHhcCchhhH-HHhhH--------------------------------------------------------
Confidence 999999999999998877 33322
Q ss_pred CCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCc
Q 004622 201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD 280 (741)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (741)
T Consensus 157 -------------------------------------------------------------------------------- 156 (966)
T KOG4626|consen 157 -------------------------------------------------------------------------------- 156 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHH
Q 004622 281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN 360 (741)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~ 360 (741)
|..+..+|+.+.|...|..++.++|....+...++.++...|+..+|..
T Consensus 157 -------------------------------a~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 157 -------------------------------AAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred -------------------------------HHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 3333444555556666666666666666666666666666666666655
Q ss_pred HHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 004622 361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440 (741)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 440 (741)
++.+.....|..+-+|..+|.++..+|+...|+..|+++++++|+.+++|+++|.+|...+.++.|+.+|.+
T Consensus 206 --------cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 206 --------CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred --------HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 555555555555556666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 004622 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (741)
Q Consensus 441 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 520 (741)
++.+.|++..++.++|.+|+.+|..+-|+..|++++++.|+.++++.++|..+-..|+..+|..+|.+++.+.|+.+.++
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCC
Q 004622 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (741)
Q Consensus 521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 600 (741)
+++|.++..+|.+++|...|.++++..|+...+..+||.+|.++|++++|+.+|++++.+.|...+++.++|..|..+|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh---ccCCcccchhhHHH---HhcCCCchhHhhh
Q 004622 601 HKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL---KSTVSFAGLTLMEI---LIPSSRNIGAKDC 674 (741)
Q Consensus 601 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~---~~~~g~~~~A~~~ 674 (741)
.+.|+..|.+++.++|.- .++ ..++|.+|...|+..+|+..|+.. ++..|.++.+++.. ...-.++++-...
T Consensus 438 v~~A~q~y~rAI~~nPt~-AeA-hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTF-AEA-HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHHhcCcHH-HHH-HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 666666666666666654 444 566666666666666666544442 33333444444422 2233334444444
Q ss_pred HHHHHhhh
Q 004622 675 IPRMYVKR 682 (741)
Q Consensus 675 ~~~~~~~~ 682 (741)
+..+.+++
T Consensus 516 l~sivrdq 523 (966)
T KOG4626|consen 516 LVSIVRDQ 523 (966)
T ss_pred HHHHHHHH
Confidence 44444433
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-45 Score=362.04 Aligned_cols=421 Identities=15% Similarity=0.132 Sum_probs=395.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (741)
Q Consensus 43 ~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 121 (741)
.+=+|+..+++..+..-..+++++ .-...|.|+|.++-..|++.+|+..++.+++++|++.+||..+|.++...|+.+.
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~ 168 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL 168 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc
Confidence 344688899999999999999988 6788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccC
Q 004622 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (741)
Q Consensus 122 A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (741)
|.+.|..+|.++|+..- +.
T Consensus 169 a~~~~~~alqlnP~l~c-a~------------------------------------------------------------ 187 (966)
T KOG4626|consen 169 AVQCFFEALQLNPDLYC-AR------------------------------------------------------------ 187 (966)
T ss_pred cHHHHHHHHhcCcchhh-hh------------------------------------------------------------
Confidence 99999999999998755 00
Q ss_pred CCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCcc
Q 004622 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (741)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (741)
T Consensus 188 -------------------------------------------------------------------------------- 187 (966)
T KOG4626|consen 188 -------------------------------------------------------------------------------- 187 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHH
Q 004622 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (741)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 361 (741)
..+|+.+-..|+..+|...|.++++..|.-..+|.++|.++..+|+...++.
T Consensus 188 ---------------------------s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq- 239 (966)
T KOG4626|consen 188 ---------------------------SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ- 239 (966)
T ss_pred ---------------------------cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH-
Confidence 1245555567889999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 441 (741)
.+++....+|...++++++|.+|-..+.+++|+.+|.+++...|+++.++-++|.+|+.+|..+-|+..|+++
T Consensus 240 -------~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra 312 (966)
T KOG4626|consen 240 -------HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA 312 (966)
T ss_pred -------HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (741)
Q Consensus 442 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (741)
+++.|+.++++.++|..+...|+..+|..+|.+++.+.|+.+++.++||.+|..+|.+++|...|.++++..|....++.
T Consensus 313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCCh
Q 004622 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (741)
Q Consensus 522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 601 (741)
++|.+|.++|++++|+.+|+.++.+.|...+++.++|..|..+|+...|+..|.+++.++|...+++.++|.+|...|+.
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCchHHHHHHHHHHHHHh---CCCHHHHH
Q 004622 602 KKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNA---WPFIRRRL 641 (741)
Q Consensus 602 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~---~g~~~~A~ 641 (741)
.+|+..|+.++.+.|+. +.+ +.+++.++.- ..++++-.
T Consensus 473 ~~AI~sY~~aLklkPDf-pdA-~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDF-PDA-YCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HHHHHHHHHHHccCCCC-chh-hhHHHHHHHHHhcccchHHHH
Confidence 99999999999999987 666 7788777644 44444444
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.6e-39 Score=379.44 Aligned_cols=629 Identities=13% Similarity=0.066 Sum_probs=420.3
Q ss_pred hhHHHHHhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhc
Q 004622 6 LLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLEL 84 (741)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~ 84 (741)
+.....+.+...+++..+.+.+..++-.+........+ ++..|+|++|+..++++++.+ ++...+..+|.++...|+
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQL--ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Confidence 44556667777777777777777665555444443333 678899999999999998887 667778888899999999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh-hh---hccc
Q 004622 85 HKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK-QD---RSVT 160 (741)
Q Consensus 85 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~-~~---~~~~ 160 (741)
+++|+..+++++..+|+++.+++.+|.++...|++++|...++++++..|+++. .......+....... .+ ....
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL-AHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999989999999999999999999999999988888766 333322222111000 00 0000
Q ss_pred cccCcCCc--cchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccc
Q 004622 161 CEYDVSNS--MSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSK 238 (741)
Q Consensus 161 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (741)
....+... ...+.......+........+. ..+...+.++....
T Consensus 288 l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~------------------~~~~~~p~~~~~~~---------------- 333 (899)
T TIGR02917 288 LKSAPEYLPALLLAGASEYQLGNLEQAYQYLN------------------QILKYAPNSHQARR---------------- 333 (899)
T ss_pred HHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH------------------HHHHhCCCChHHHH----------------
Confidence 00000000 0000000000000000000000 00000000000000
Q ss_pred cccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhc
Q 004622 239 SGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASL 318 (741)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 318 (741)
.+..+....++..... ................+..+|..++..
T Consensus 334 -------~la~~~~~~g~~~~A~------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 334 -------LLASIQLRLGRVDEAI------------------------------ATLSPALGLDPDDPAALSLLGEAYLAL 376 (899)
T ss_pred -------HHHHHHHHCCCHHHHH------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 0000000000000000 000000000011223344455555555
Q ss_pred CChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHH--------------------------HHHH
Q 004622 319 NDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKF--------------------------CVTR 372 (741)
Q Consensus 319 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~ 372 (741)
|++++|+..|++++..+|++...+..++.++...|++++|+..+...... .+..
T Consensus 377 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 377 GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555444432222110 3444
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 004622 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (741)
Q Consensus 373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 452 (741)
.....|.++..+..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..+++++...|.+..++
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 45566777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (741)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 532 (741)
..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++..+..+|.++...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
+++|+..|+++++..|.++.++..+|.++...|++++|+..|++++...|++..++..++.++...|++++|+..++.+.
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhHHHHhcCCCchhHhhhHHHHHhhhhhccc---
Q 004622 613 RTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSL--- 687 (741)
Q Consensus 613 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 687 (741)
...|.+ ... +..+|.++...|++++|+..++......| .....++.++...|++.+|...++...........
T Consensus 697 ~~~~~~-~~~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 697 KQHPKA-ALG-FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred hhCcCC-hHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 887776 444 77888888888999998877776544333 45667888888889999998888887765532221
Q ss_pred -----hhhhhhhhhccchhHHhhhhcch
Q 004622 688 -----PCVILSKRESSGDKTFLLQSRRL 710 (741)
Q Consensus 688 -----~~~~~~~~~a~~~~~~~l~~~~~ 710 (741)
....+++.++...+..++...|.
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 12247778888888888887775
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-38 Score=373.45 Aligned_cols=561 Identities=14% Similarity=0.043 Sum_probs=453.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
..+..++..|+|++|+..|+++++.+ .+...+..+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++
T Consensus 130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 209 (899)
T TIGR02917 130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI 209 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH
Confidence 45556788999999999999999888 56777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (741)
++|+..|++++..+|+++. ....+..+.... ++...+...+.......+.++.......
T Consensus 210 ~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~--------- 268 (899)
T TIGR02917 210 ELALAAYRKAIALRPNNPA-VLLALATILIEA-----------GEFEEAEKHADALLKKAPNSPLAHYLKA--------- 268 (899)
T ss_pred HHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCchHHHHHH---------
Confidence 9999999999999998877 433333332221 0111111111111111111110000000
Q ss_pred cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (741)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (741)
..... .+.....+..+.
T Consensus 269 ------------------------~~~~~-----~~~~~~A~~~~~---------------------------------- 285 (899)
T TIGR02917 269 ------------------------LVDFQ-----KKNYEDARETLQ---------------------------------- 285 (899)
T ss_pred ------------------------HHHHH-----hcCHHHHHHHHH----------------------------------
Confidence 00000 000000000000
Q ss_pred ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (741)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~ 359 (741)
...+..+........+|..++..|++++|+..+.+++...|.+......++.++...|++++|.
T Consensus 286 ----------------~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 286 ----------------DALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred ----------------HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 0000111223456678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (741)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 439 (741)
. .+.......|.+...+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+.
T Consensus 350 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 350 A--------TLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred H--------HHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 9 66777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (741)
Q Consensus 440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 519 (741)
+++...|........++..+...|++++|+..+++.+...|.++.++..+|.++...|++++|+.+|+++++.+|.+..+
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC
Q 004622 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (741)
Q Consensus 520 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 599 (741)
+..+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc---CCcccchhhHHHHhcCCCchhHhhhHH
Q 004622 600 QHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS---TVSFAGLTLMEILIPSSRNIGAKDCIP 676 (741)
Q Consensus 600 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (741)
++++|+..+++++...|.+ ... +..+|.++...|++++|+.+++.+.. ..+..+..++.++...|++++|+..|+
T Consensus 582 ~~~~A~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDS-PEA-WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcCCCC-HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999998887 555 99999999999999999987776533 334578889999999999999999999
Q ss_pred HHHhhhhhccc--------hhhhhhhhhccchhHHhhhhcchh
Q 004622 677 RMYVKRFTDSL--------PCVILSKRESSGDKTFLLQSRRLR 711 (741)
Q Consensus 677 ~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~l~~~~~~ 711 (741)
++......... ....+.+.++...+..+....|..
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 702 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA 702 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 88775422111 112245566666666666655543
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.3e-38 Score=349.66 Aligned_cols=431 Identities=16% Similarity=0.140 Sum_probs=257.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004622 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (741)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 115 (741)
+...+..++.+|+.|+|++|+..|+++|.+.+++..+.++|.||.++|++++|+.+|+++++++|++.++++++|.+|..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34455788999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCC
Q 004622 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (741)
Q Consensus 116 ~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 195 (741)
+|++++|+..|..++.+++.+.......+............ ...+...|...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-------------------~~~l~~~~~~~--------- 258 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKA-------------------KEILETKPENL--------- 258 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH-------------------HHHHhcCCCCC---------
Confidence 99999999999998888776655222222111110000000 00000000000
Q ss_pred cccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCccccccc
Q 004622 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (741)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (741)
T Consensus 259 -------------------------------------------------------------------------------- 258 (615)
T TIGR00990 259 -------------------------------------------------------------------------------- 258 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcH
Q 004622 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML 355 (741)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 355 (741)
.....+|. ++.......+...+....+.+|.....+..++..+..
T Consensus 259 ------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e---- 303 (615)
T TIGR00990 259 ------------------------------PSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPE---- 303 (615)
T ss_pred ------------------------------CCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHH----
Confidence 00000111 0000011111122223333333222222222211111
Q ss_pred HHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHH
Q 004622 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQRELE 432 (741)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~ 432 (741)
....++|++|+..|++++.. .|....++..+|.++...|+++
T Consensus 304 -----------------------------------~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 304 -----------------------------------SKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred -----------------------------------hhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 12235566666666666654 2444555666666666666666
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 433 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
+|+..|+++++.+|....++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+|++++.+
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH-----
Q 004622 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA----- 587 (741)
Q Consensus 513 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----- 587 (741)
+|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|.....
T Consensus 429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~ 508 (615)
T TIGR00990 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508 (615)
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666665543211
Q ss_pred -HHHHHHH-HHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622 588 -YHLRGLL-LHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRL 646 (741)
Q Consensus 588 -~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 646 (741)
+...+.. +...|++++|+..+++++.++|++ ... +..+|.++...|++++|+.+++.
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-~~a-~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPEC-DIA-VATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHH-HHHHHHHHHHccCHHHHHHHHHH
Confidence 1122222 223466666666666666666655 233 55566666666666666654444
No 6
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=321.60 Aligned_cols=467 Identities=19% Similarity=0.211 Sum_probs=327.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004622 37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (741)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 115 (741)
...+.+++.+|..|||+.||.+|+.||.++ +|+..|.||..||.++|+|++|+.+..++++++|+|+++|.++|.++..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 345678999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCC
Q 004622 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (741)
Q Consensus 116 ~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 195 (741)
+|++++|+..|.++|+.+|+|.. ++.++.......... +.......+...+.++|.+..++.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~-L~~gl~~a~~~~~~~------------~~~~~~p~~~~~l~~~p~t~~~~~----- 144 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQ-LKTGLAQAYLEDYAA------------DQLFTKPYFHEKLANLPLTNYSLS----- 144 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHH-HHHhHHHhhhHHHHh------------hhhccCcHHHHHhhcChhhhhhhc-----
Confidence 99999999999999999999999 999998888222111 111222256778888888888887
Q ss_pred cccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCc---cccccccCcccccccccCCCCCCCCCCCCCCCcccc
Q 004622 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPV---SKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272 (741)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (741)
+|.+...+..+..+|+.+.. +|+.+++.+.+.+++......+..... .+.
T Consensus 145 ---------------------~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~------~~~ 197 (539)
T KOG0548|consen 145 ---------------------DPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEIL------ASM 197 (539)
T ss_pred ---------------------cHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccC------CCC
Confidence 88888888888888888776 788888888888877663222221111 111
Q ss_pred cccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHch
Q 004622 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW 352 (741)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 352 (741)
..|. .+...+++. .+.....+..+..+..++.+|+..++..+|..|++.|..+++++ .++..+.+.+.+|+..
T Consensus 198 ~~p~-----~~~~~~~~~-~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~ 270 (539)
T KOG0548|consen 198 AEPC-----KQEHNGFPI-IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLER 270 (539)
T ss_pred CCcc-----cccCCCCCc-cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhc
Confidence 1111 111111111 11112223366788899999999999999999999999999999 9999999999999999
Q ss_pred hcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 004622 353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432 (741)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 432 (741)
|.+..++.....+...-.+... ....-...+..+|..+...++++.|+.+|++++..... ..+.-+....+
T Consensus 271 ~~~~~c~~~c~~a~E~gre~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~E 341 (539)
T KOG0548|consen 271 GKYAECIELCEKAVEVGRELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAE 341 (539)
T ss_pred cHHHHhhcchHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHH
Confidence 9999998863332221111000 00001223334555666666666666666666554433 33444455555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 433 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
+++.......-.+|.-.......|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|.+..|+...+.++++
T Consensus 342 k~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 342 KALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 66666555555566555555555666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Q 004622 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (741)
Q Consensus 513 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 564 (741)
+|+...+|...|.++..+.+|++|++.|+++++.+|++..+...+..+...+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666665555555555543
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.6e-37 Score=363.60 Aligned_cols=361 Identities=13% Similarity=0.024 Sum_probs=310.0
Q ss_pred hhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH--------
Q 004622 310 KLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV-------- 381 (741)
Q Consensus 310 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------- 381 (741)
..|..+...|++++|+..|++++..+|++..++..++.++...|++++|+. .+.+.....|...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~--------~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVA--------QFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCccchhHHHHH
Confidence 458899999999999999999999999999999999999999999999999 4444444444332
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004622 382 ------DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (741)
Q Consensus 382 ------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 455 (741)
......|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12345688899999999999999999999999999999999999999999999999999999999987766554
Q ss_pred HH------------------------------------------HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004622 456 GQ------------------------------------------ARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (741)
Q Consensus 456 a~------------------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (741)
+. ++...|++++|+..|+++++.+|+++.+++.+|.+|
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44 344679999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------------
Q 004622 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA------------------------------ 543 (741)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a------------------------------ 543 (741)
...|++++|+..++++++.+|+++..++.++..+...+++++|+..++++
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999988888887777777777777766542
Q ss_pred ----------HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622 544 ----------IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSR 613 (741)
Q Consensus 544 ----------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (741)
++..|.++..+..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|++.+++++.
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 2246777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc---------ccchhhHHHHhcCCCchhHhhhHHHHHh
Q 004622 614 TMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS---------FAGLTLMEILIPSSRNIGAKDCIPRMYV 680 (741)
Q Consensus 614 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (741)
..|++ ... +..+|.++...|++++|+.+++.+....+ .....++.++...|+.++|+..|+.+..
T Consensus 666 ~~p~~-~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDS-LNT-QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCC-hHH-HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88887 444 78889999999999999987777644322 1334568888999999999999988865
No 8
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=294.44 Aligned_cols=445 Identities=19% Similarity=0.197 Sum_probs=332.7
Q ss_pred HHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004622 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (741)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 112 (741)
..+...+.+++++|.+|+|++||++|++||+..|+ +.+|.||+.||..+|+|++-+++|.++|+++|++.+|+++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 34566679999999999999999999999999966 99999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHhhhhccccc-cCcCCccchhhhhccccccCccchhhhh
Q 004622 113 FSALGRKEEALSVWEKGYEH-ALHQSADLKQFLELEELLTAAKQDRSVTCE-YDVSNSMSSLTVSESGLNANDKMSETSE 190 (741)
Q Consensus 113 ~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (741)
+.++|++++|+.+..-.--+ +.+|.. ....+..+....+.+.....+.. +.+.... ......
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s-~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS------------~~fi~s--- 256 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNAS-IEPMAERVLKKQAMKKAKEKLKENRPPVLPS------------ATFIAS--- 256 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccch-hHHHHHHHHHHHHHHHHHHhhcccCCCCCCc------------HHHHHH---
Confidence 99999999999876543222 233333 33333333333322211111110 0111000 000000
Q ss_pred ccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcc
Q 004622 191 NHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDA 270 (741)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (741)
.+++......
T Consensus 257 --------------------------------------------------------yf~sF~~~~~-------------- 266 (606)
T KOG0547|consen 257 --------------------------------------------------------YFGSFHADPK-------------- 266 (606)
T ss_pred --------------------------------------------------------HHhhcccccc--------------
Confidence 0000000000
Q ss_pred cccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcC---ChhhHHHHHHHhhccCCCCchhHHHHHH
Q 004622 271 SEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLN---DSNTNSESYSKSSISDNKSSDSTESRSK 347 (741)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~la~ 347 (741)
.... .....++....-+....-.+ .|.+|...+.+.....-...
T Consensus 267 --------------~~~~-----------~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~-------- 313 (606)
T KOG0547|consen 267 --------------PLFD-----------NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSL-------- 313 (606)
T ss_pred --------------cccc-----------CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhc--------
Confidence 0000 00001111111111111112 44455554444433210000
Q ss_pred HHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004622 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF 427 (741)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 427 (741)
+...+...-...+.++...|..++-.|++-.|...|+.++..+|.+...|..+|..|..
T Consensus 314 ---------------------~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d 372 (606)
T KOG0547|consen 314 ---------------------SVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYAD 372 (606)
T ss_pred ---------------------cccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhh
Confidence 11111111123356777889999999999999999999999999998889999999999
Q ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (741)
Q Consensus 428 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (741)
..+.++-...|.++..++|.++++|+..|.+++-.+++++|+..|++++.++|++.-.+..++...+++++++++...|+
T Consensus 373 ~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe 452 (606)
T KOG0547|consen 373 ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE 452 (606)
T ss_pred hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHH-HcCChHHHHHHHHHHHhh
Q 004622 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQ-DLANSEKALECLQQVLYI 580 (741)
Q Consensus 508 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~ 580 (741)
.+.+..|+.++++...|.++..++++++|++.|.+++++.|. ++..+...|.+.. -.+++..|+..+++++++
T Consensus 453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999998 5555555554433 348999999999999999
Q ss_pred CcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 581 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
+|....++..+|.+..++|+.++|+++|+++..+..+.
T Consensus 533 Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 533 DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999998876553
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.8e-35 Score=349.16 Aligned_cols=499 Identities=14% Similarity=0.034 Sum_probs=387.4
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHH------------
Q 004622 41 IELAKL-CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY------------ 106 (741)
Q Consensus 41 ~~~~~~-~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------------ 106 (741)
++-.++ -..++++.|.+.+.+++.++ +++..+..++.++++.|++++|...++++++++|+++.++
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCc
Confidence 333344 48899999999999999999 7888899999999999999999999999999999998864
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccC
Q 004622 107 ----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNAN 182 (741)
Q Consensus 107 ----~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (741)
+.+|.++...|++++|+..|++++..+|.+............. .. ++...+...+.. .+..+
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~----~~-------g~~~~A~~~L~~---ll~~~ 177 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAK----LP-------AQRPEAINQLQR---LNADY 177 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhh----CC-------ccHHHHHHHHHH---HHHhC
Confidence 6678899999999999999999999999887511111110000 00 000000000000 00001
Q ss_pred ccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCC
Q 004622 183 DKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSK 262 (741)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (741)
T Consensus 178 -------------------------------------------------------------------------------- 177 (1157)
T PRK11447 178 -------------------------------------------------------------------------------- 177 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccC-------
Q 004622 263 STHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD------- 335 (741)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~------- 335 (741)
+........+|..++..|++++|+..+++++...
T Consensus 178 ---------------------------------------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 178 ---------------------------------------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 1123344556666666666666666666654422
Q ss_pred ---------------------------CCCch--------------------hHHHHHHHHHchhcHHHHHHHHHHhHHH
Q 004622 336 ---------------------------NKSSD--------------------STESRSKLSFKWDMLKETSNEAKRNKKF 368 (741)
Q Consensus 336 ---------------------------p~~~~--------------------~~~~la~~~~~~g~~~~a~~~~~~~~~~ 368 (741)
|.+.. ....++.++...|++++|+.
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~-------- 290 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIP-------- 290 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHH--------
Confidence 22111 01133666777888888888
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcccHHHH
Q 004622 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA 434 (741)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~A 434 (741)
.+.......|.+..++..+|.++...|++++|+.+|+++++.+|++.. ....+|.++...|++++|
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 677777778888999999999999999999999999999999887642 123457788899999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH-----------------------
Q 004622 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI----------------------- 491 (741)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~----------------------- 491 (741)
+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999988766554443
Q ss_pred -------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 004622 492 -------------------VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (741)
Q Consensus 492 -------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 552 (741)
++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+++.
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 3446789999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----------------------------------------HhhCcccHHHHHHHH
Q 004622 553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG 592 (741)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~a----------------------------------------l~~~p~~~~~~~~la 592 (741)
.++.++..+...+++++|+..++++ +...|.++..+..+|
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 8887777777777777776665542 224677788889999
Q ss_pred HHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCch
Q 004622 593 LLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNI 669 (741)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 669 (741)
.++...|++++|+..|+++++.+|++ ... +..++.++...|++++|+.+++.+....| .....++.++...|+++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~-~~a-~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGN-ADA-RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998 566 99999999999999999988877655443 46677899999999999
Q ss_pred hHhhhHHHHHhhh
Q 004622 670 GAKDCIPRMYVKR 682 (741)
Q Consensus 670 ~A~~~~~~~~~~~ 682 (741)
+|+..|+.+....
T Consensus 689 eA~~~~~~al~~~ 701 (1157)
T PRK11447 689 AAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHhhhC
Confidence 9999999887643
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.3e-33 Score=315.09 Aligned_cols=429 Identities=16% Similarity=0.116 Sum_probs=346.9
Q ss_pred hHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 004622 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (741)
Q Consensus 71 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 150 (741)
.+.++|..+++.|+|++|+..|++++.++|+ +..+..+|.||..+|++++|+..++++++++|++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~------------ 195 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK------------ 195 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH------------
Confidence 3678899999999999999999999999996 679999999999999999999999999999998876
Q ss_pred HHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccC
Q 004622 151 TAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKG 230 (741)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (741)
T Consensus 196 -------------------------------------------------------------------------------- 195 (615)
T TIGR00990 196 -------------------------------------------------------------------------------- 195 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHh
Q 004622 231 GSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDK 310 (741)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (741)
.+..
T Consensus 196 ----------------------------------------------------------------------------a~~~ 199 (615)
T TIGR00990 196 ----------------------------------------------------------------------------ALNR 199 (615)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1223
Q ss_pred hhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHH
Q 004622 311 LSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390 (741)
Q Consensus 311 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 390 (741)
+|..+...|++++|+..|..+...++.+............. ..+.. .........|.....+..++..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~--------~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAES--------KAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHH--------HHHHHHhcCCCCCCCHHHHHHH
Confidence 56777888999999999988887765544432222111111 11122 1222223344443344445543
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCC
Q 004622 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQS---NPSAGEAWKRRGQARAALGE 464 (741)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~ 464 (741)
+ .......+...+......++.....+..++..+. ..+++++|+..|++++.. .|....++..+|.++...|+
T Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~ 346 (615)
T TIGR00990 268 L-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK 346 (615)
T ss_pred H-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Confidence 3 2223333344455555666666666666665543 347899999999999986 47778899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (741)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 544 (741)
+++|+..+++++.++|.+...+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++
T Consensus 347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 347 HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchH----
Q 004622 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLI---- 620 (741)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 620 (741)
..+|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|....
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886411
Q ss_pred -HHHHHHHH-HHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622 621 -WNLTRWRN-LCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMYVKR 682 (741)
Q Consensus 621 -~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (741)
.. +...+ .++...|++++|+.+++......| .....++.++...|++++|+..|+.+....
T Consensus 507 ~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 507 VLP-LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 11 22333 344457999999977776443334 467889999999999999999999887654
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-34 Score=299.16 Aligned_cols=532 Identities=14% Similarity=0.084 Sum_probs=435.3
Q ss_pred HHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRKEEALSVWEKG 129 (741)
Q Consensus 52 ~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~a 129 (741)
++.|...|...+... +|..++..+|.+.+..|+|..|+..|++++.++|.. ++.++.+|.|+.++|+.+.|+.+|+++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 589999999999988 788889999999999999999999999999999987 558899999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCccccc
Q 004622 130 YEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSE 209 (741)
Q Consensus 130 l~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (741)
++++|.+.. +..+|..+.....-.++ ...++..+.+.+..-..+|.....+.++-.-
T Consensus 226 lqLdp~~v~-alv~L~~~~l~~~d~~s--------~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf-------------- 282 (1018)
T KOG2002|consen 226 LQLDPTCVS-ALVALGEVDLNFNDSDS--------YKKGVQLLQRAYKENNENPVALNHLANHFYF-------------- 282 (1018)
T ss_pred HhcChhhHH-HHHHHHHHHHHccchHH--------HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh--------------
Confidence 999998888 77777776665522221 2223344445555555566666555511110
Q ss_pred ccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCC
Q 004622 210 TCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPID 289 (741)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (741)
-..++++........
T Consensus 283 ------------------------K~dy~~v~~la~~ai----------------------------------------- 297 (1018)
T KOG2002|consen 283 ------------------------KKDYERVWHLAEHAI----------------------------------------- 297 (1018)
T ss_pred ------------------------cccHHHHHHHHHHHH-----------------------------------------
Confidence 001111111000000
Q ss_pred CccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCC-chhHHHHHHHHHchhcHHHHHHHHHHhHHH
Q 004622 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKS-SDSTESRSKLSFKWDMLKETSNEAKRNKKF 368 (741)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~a~~~~~~~~~~ 368 (741)
.........++.+..+|..++.+|+|++|..+|.+++..+|++ +-.+..+|..+...|+++.+..
T Consensus 298 ------~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~-------- 363 (1018)
T KOG2002|consen 298 ------KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF-------- 363 (1018)
T ss_pred ------HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH--------
Confidence 0000112456778999999999999999999999999999998 7788999999999999999999
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622 369 CVTRISKSKSISVDFRLSRGIAQVNEG----KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (741)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 444 (741)
+++.+....|.+.+....+|..|...+ ..+.|..+..++++..|.+.++|..++.++....-+ .++..|.+++..
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDI 442 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHH
Confidence 999999999999999999999998886 678999999999999999999999999998765544 449999988843
Q ss_pred -----CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 445 -----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNS-----ADILHERGIVNFKFKDFNAAVEDLSAC 509 (741)
Q Consensus 445 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (741)
.+-.++.+.++|..++..|++.+|...|.+++.. +++. ....+++|.++...++++.|.+.|..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3456789999999999999999999999999887 1211 235899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--ccHHH
Q 004622 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKA 587 (741)
Q Consensus 510 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 587 (741)
++.+|....++..+|......++..+|..++..++..+..++.++..+|.++....++..|.+-|+..++.-. .++.+
T Consensus 523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 9999999999999998888889999999999999999999999999999999999999999998887775422 35677
Q ss_pred HHHHHHHHHH------------CCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccC---Cc
Q 004622 588 YHLRGLLLHG------------LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKST---VS 652 (741)
Q Consensus 588 ~~~la~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~ 652 (741)
...||+++.. .+.+++|++.|.+++..+|.| .++ -..+|.|+...|++.+|...|..+... .+
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN-~yA-ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~ 680 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKN-MYA-ANGIGIVLAEKGRFSEARDIFSQVREATSDFE 680 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcch-hhh-ccchhhhhhhccCchHHHHHHHHHHHHHhhCC
Confidence 7888887764 356788999999999999999 677 788999999999999999888776443 44
Q ss_pred ccchhhHHHHhcCCCchhHhhhHHHHHhhhhhccch
Q 004622 653 FAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSLP 688 (741)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (741)
.++.++|.+|..+|+|..|++.|+..++......-+
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 799999999999999999999999998888754443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.8e-30 Score=293.41 Aligned_cols=553 Identities=10% Similarity=-0.024 Sum_probs=315.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
.++..+..+|||++|+..|++|++++ .+...++.++.+|++.|++++|+..++++++.+|++...+..+|.+ +++
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~ 124 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVE 124 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccC
Confidence 44555677899999999999999999 6677799999999999999999999999999999999888887666 999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH------HHHHHHhhhhcccc--ccCcC--Cccchh--hhhccccccCccchh
Q 004622 120 EEALSVWEKGYEHALHQSADLKQFLELE------ELLTAAKQDRSVTC--EYDVS--NSMSSL--TVSESGLNANDKMSE 187 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~------~~~~~~~~~~~~~~--~~~~~--~~~~~~--~~~~~~l~~~~~~~~ 187 (741)
++|+..|+++++++|++.. +...+... .......+....+. ...+. .....+ .+++..+..-+....
T Consensus 125 ~kA~~~ye~l~~~~P~n~~-~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDA-VPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred hhHHHHHHHHHHhCCCChh-HHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999999999999999 66555554 10111111111000 00000 000000 011111111010111
Q ss_pred hhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCccccccccc-CCCCCCCCCCCCC
Q 004622 188 TSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN-HNGSSDGSKSTHA 266 (741)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 266 (741)
.+. .+.+.. +..+..... +..+... ..+ .
T Consensus 204 lL~-----------------------------------~L~k~~---pl~~~~~~~---L~~ay~q~l~~-~-------- 233 (987)
T PRK09782 204 LYN-----------------------------------EARQQN---TLSAAERRQ---WFDVLLAGQLD-D-------- 233 (987)
T ss_pred HHH-----------------------------------HHHhcC---CCCHHHHHH---HHHHHHHhhCH-H--------
Confidence 110 000000 000000000 0000000 000 0
Q ss_pred CCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccC---CCCchhHH
Q 004622 267 SRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD---NKSSDSTE 343 (741)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~ 343 (741)
.+ ... . .+..+........++..+...|+.++|...+.+.-... |.+...+.
T Consensus 234 --~a---------------------~al-~-~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 234 --RL---------------------LAL-Q-SQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred --HH---------------------HHH-h-chhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 00 000 0 00112567778889999999999999998888865554 33444444
Q ss_pred HHHHHH-----------------------------HchhcHHHHHHHHH-------HhHHH--------------HHHHh
Q 004622 344 SRSKLS-----------------------------FKWDMLKETSNEAK-------RNKKF--------------CVTRI 373 (741)
Q Consensus 344 ~la~~~-----------------------------~~~g~~~~a~~~~~-------~~~~~--------------~~~~~ 373 (741)
.++... ...+.+..+..... ..... ....+
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 443332 23333332221100 00000 00111
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------
Q 004622 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED------------------------------------------ 411 (741)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------------------------------ 411 (741)
....|.+...+...+......|++++|...|+++....
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 22346677777788888888888888888887765521
Q ss_pred -----------------------CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 004622 412 -----------------------PM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (741)
Q Consensus 412 -----------------------p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 466 (741)
|. ++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|+++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHH
Confidence 22 44455556655554 555666666666666666533 2444455555666666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (741)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 546 (741)
+|+..++++....|.+ ..+..+|.++...|++++|+.+++++++.+|.....+..++......|++++|+..++++++.
T Consensus 527 eAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 527 TALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6666666655554432 334555666666666666666666666666666555555555555556666666666666666
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHH
Q 004622 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRW 626 (741)
Q Consensus 547 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 626 (741)
+|+ +.++..+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++ ... ++.
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-~~a-~~n 682 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-PAL-IRQ 682 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHH-HHH
Confidence 664 56666666666666666666666666666666666666666666666666666666666666666665 333 666
Q ss_pred HHHHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHH
Q 004622 627 RNLCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMY 679 (741)
Q Consensus 627 la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (741)
+|.++...|++++|+.+++.+....| .+....+++.....++..|.+.+.+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666655555443333 234444555555555555555444443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.4e-30 Score=292.51 Aligned_cols=367 Identities=10% Similarity=-0.059 Sum_probs=307.4
Q ss_pred ccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCC---chhHHHHHHHHHchhc---HHHHHHH-----------
Q 004622 299 RQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKS---SDSTESRSKLSFKWDM---LKETSNE----------- 361 (741)
Q Consensus 299 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~---~~~a~~~----------- 361 (741)
+......+.+..++......|++++|...|+.++...++. ......++.+|...+. ...+...
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 3446677888889999999999999999999999973322 2345588888887765 2222111
Q ss_pred -HH-----HhHHHHHHHhhccCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 004622 362 -AK-----RNKKFCVTRISKSKSI--SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433 (741)
Q Consensus 362 -~~-----~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 433 (741)
.. ..............|. ...+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHH
Confidence 00 0001133344455566 89999999999987 899999999999999999854 46677888889999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (741)
Q Consensus 434 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (741)
|+..|++++...|.+ ..+..+|.++...|++++|+.+++++++..|.....+..++......|++++|+..++++++.+
T Consensus 528 Ai~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 528 ALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999999988776654 5578899999999999999999999999999998888888877888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHH
Q 004622 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (741)
Q Consensus 514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 593 (741)
|+ ..++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.
T Consensus 607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 96 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhHHHHhcCCCchhH
Q 004622 594 LLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLMEILIPSSRNIGA 671 (741)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 671 (741)
++...|++++|+..|++++.++|++ ..+....|.+.....+++.|...++......+ .++...+.++...+++-++
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~--a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~~~~~~~~~ 763 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQ--ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNVGGA 763 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC--chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhccccchHhhhcccccCC
Confidence 9999999999999999999999987 44488999999999999999965555433333 2666677777777776444
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4.8e-30 Score=284.81 Aligned_cols=384 Identities=10% Similarity=-0.015 Sum_probs=331.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc----CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004622 43 LAKLCSLRNWSKAIRILDSLLAQS----YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (741)
Q Consensus 43 ~~~~~~~g~~~~Ai~~~~~al~~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 118 (741)
-+.++++.||+.-.-+|+.+-+.. .+.......+...++.|++++|+..++.++...|+++.+++.+|.+....|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 12 PTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQ 91 (656)
T ss_pred chhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCC
Confidence 355788999998888888876633 4444466678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCccc
Q 004622 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (741)
Q Consensus 119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (741)
+++|+..|++++.++|+++. +
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~-a---------------------------------------------------------- 112 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPE-D---------------------------------------------------------- 112 (656)
T ss_pred HHHHHHHHHHHHHhCCCChH-H----------------------------------------------------------
Confidence 99999999999999999877 1
Q ss_pred ccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCC
Q 004622 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (741)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (741)
T Consensus 113 -------------------------------------------------------------------------------- 112 (656)
T PRK15174 113 -------------------------------------------------------------------------------- 112 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHH
Q 004622 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (741)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a 358 (741)
+..+|..+...|++++|+..|++++..+|+++.++..++.++...|++++|
T Consensus 113 -----------------------------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 113 -----------------------------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred -----------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH
Confidence 122456677788999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHH
Q 004622 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISD 437 (741)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~ 437 (741)
.. .+..+....|.....+...+ .+...|++++|+..+++++..+|. .......++.++...|++++|+..
T Consensus 164 ~~--------~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 164 IS--------LARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred HH--------HHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 98 55566666777777776654 478899999999999999998763 344556678899999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622 438 FTEAIQSNPSAGEAWKRRGQARAALGESVE----AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (741)
Q Consensus 438 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (741)
+++++..+|+++.++..+|.++...|++++ |+..++++++.+|+++.++..+|.++...|++++|+..+++++..+
T Consensus 235 ~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 235 GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999986 8999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH-----HHH
Q 004622 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-----KAY 588 (741)
Q Consensus 514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~ 588 (741)
|+++.++..+|.++...|++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|++. ++.
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~ 394 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGL 394 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHH
Confidence 999999999999999999999999999999999999888778889999999999999999999999988753 233
Q ss_pred HHHHHHHHHCCChHH
Q 004622 589 HLRGLLLHGLGQHKK 603 (741)
Q Consensus 589 ~~la~~~~~~g~~~~ 603 (741)
..+...+...+...+
T Consensus 395 ~~~~~~~~~~~~~~~ 409 (656)
T PRK15174 395 LALDGQISAVNLPPE 409 (656)
T ss_pred HHHHHHHHhcCCccc
Confidence 344444444444433
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-29 Score=262.41 Aligned_cols=528 Identities=16% Similarity=0.081 Sum_probs=282.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhc--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLEL--HKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 117 (741)
.+..+.-+..-+..|.-+|+.|-.++ .....+..++..++..|. ++.|...|..++...|+|+.+++.+|++.+..|
T Consensus 99 kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk 178 (1018)
T KOG2002|consen 99 KEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKK 178 (1018)
T ss_pred HHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccc
Confidence 55555556677889999999998888 444445555555555555 599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcc
Q 004622 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI 197 (741)
Q Consensus 118 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 197 (741)
+|..|+..|+++|.++|....+...+...+-....... .++. .....+.-+|.
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~-----------~a~~---a~~ralqLdp~------------- 231 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE-----------KALL---AFERALQLDPT------------- 231 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh-----------hHHH---HHHHHHhcChh-------------
Confidence 99999999999999999887733333222211110000 0000 00000000110
Q ss_pred cccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCC
Q 004622 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (741)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (741)
T Consensus 232 -------------------------------------------------------------------------------- 231 (1018)
T KOG2002|consen 232 -------------------------------------------------------------------------------- 231 (1018)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCCccccccccccCCCchHHHHhhhhHH---HhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc
Q 004622 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDS---ASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (741)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~---~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 354 (741)
...+...||... .....+..++..+.++...+|.+|.+++.++.-++..|+
T Consensus 232 --------------------------~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 232 --------------------------CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred --------------------------hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 011111111111 111233344444455555555555555555555555555
Q ss_pred HHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHH
Q 004622 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEA 433 (741)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~ 433 (741)
|..+......+.... ...+..++.++.+|+++..+|+|++|..+|.++++.+|++ .-.++.+|..|+..|+++.
T Consensus 286 y~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~ 360 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEE 360 (1018)
T ss_pred HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHH
Confidence 544444322221111 1122223344445555555555555555555555544444 3444445555555555555
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCCH--------------------------
Q 004622 434 AISDFTEAIQSNPSAGEAWKRRGQARAALG----ESVEAIQDLSKALEFEPNSA-------------------------- 483 (741)
Q Consensus 434 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~-------------------------- 483 (741)
|+.+|++++...|++.+....+|.+|...+ ..+.|..++.++++..|.+.
T Consensus 361 s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 361 SKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 555555555555555544444444444433 33444444444444444444
Q ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 484 ------------DILHERGIVNFKFKDFNAAVEDLSACVKL-----DKEN-----KSAYTYLGLALSSIGEYKKAEEAHL 541 (741)
Q Consensus 484 ------------~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~ 541 (741)
+.++++|..++..|++.+|...|..++.. +++. ....+++|.++...++++.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 44555555555555555555555555543 1111 1235555555555555555555555
Q ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc-hH
Q 004622 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH-LI 620 (741)
Q Consensus 542 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 620 (741)
.+++..|....++..+|.+....++..+|...+..++..+..++.++..+|.++....++..|.+-|+..+...... ..
T Consensus 521 ~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 521 SILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred HHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 55555555555555555555555555555555555555555555555555655555555555555444444321111 12
Q ss_pred HHHHHHHHHHHHh------------CCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHHhhhh--
Q 004622 621 WNLTRWRNLCFNA------------WPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMYVKRF-- 683 (741)
Q Consensus 621 ~~~~~~la~~~~~------------~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 683 (741)
.+ ...||.++.+ .+.++.|+.+|..+...+| ++...+|-++...|++.+|+..|.+.-...-
T Consensus 601 Ys-liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~ 679 (1018)
T KOG2002|consen 601 YS-LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF 679 (1018)
T ss_pred hH-HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC
Confidence 22 4455555432 2345666666665544444 4566677777777777777777765533321
Q ss_pred hcc------chhhhhhhhhccchhHHhhhh
Q 004622 684 TDS------LPCVILSKRESSGDKTFLLQS 707 (741)
Q Consensus 684 ~~~------~~~~~~~~~~a~~~~~~~l~~ 707 (741)
.+. .....++|+.|...|...+.+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 010 134456777777666665544
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=6.9e-29 Score=275.60 Aligned_cols=336 Identities=12% Similarity=0.007 Sum_probs=310.9
Q ss_pred HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622 306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL 385 (741)
Q Consensus 306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (741)
..+......+...|++++|+..+...+...|.+..++..++.+....|++++|.. .+..+....|.+..++.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~--------~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQ--------VVNKLLAVNVCQPEDVL 114 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHH--------HHHHHHHhCCCChHHHH
Confidence 3455567788999999999999999999999999999999999999999999999 88888889999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 465 (741)
.+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887765 47889999
Q ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHH
Q 004622 466 VEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK----AEEAH 540 (741)
Q Consensus 466 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~ 540 (741)
++|+..+++++...|. .......++.++...|++++|+..+++++..+|+++.++..+|.++...|++++ |+..|
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 9999999999998763 444556678899999999999999999999999999999999999999999986 89999
Q ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchH
Q 004622 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLI 620 (741)
Q Consensus 541 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 620 (741)
++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ .
T Consensus 274 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-~ 352 (656)
T PRK15174 274 RHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT-S 352 (656)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc
Q 004622 621 WNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS 652 (741)
Q Consensus 621 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 652 (741)
.. +..+|.++...|++++|+..++......|
T Consensus 353 ~~-~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 353 KW-NRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 33 66679999999999999988877655544
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=3.5e-28 Score=275.98 Aligned_cols=395 Identities=10% Similarity=-0.010 Sum_probs=331.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 004622 46 LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALS 124 (741)
Q Consensus 46 ~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 124 (741)
+.-.|++++|+..|.+++..+ .....+.++|.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+.
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 567899999999999999866 6666799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCC
Q 004622 125 VWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQS 204 (741)
Q Consensus 125 ~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (741)
.++++++.+|++..
T Consensus 105 ~l~~~l~~~P~~~~------------------------------------------------------------------ 118 (765)
T PRK10049 105 KAKQLVSGAPDKAN------------------------------------------------------------------ 118 (765)
T ss_pred HHHHHHHhCCCCHH------------------------------------------------------------------
Confidence 99999999988744
Q ss_pred cccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccC
Q 004622 205 RDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDIC 284 (741)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (741)
T Consensus 119 -------------------------------------------------------------------------------- 118 (765)
T PRK10049 119 -------------------------------------------------------------------------------- 118 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHH
Q 004622 285 NGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKR 364 (741)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~ 364 (741)
+..+|..+...|++++|+..|++++...|++..++..++.++...+..++|+..
T Consensus 119 -----------------------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~--- 172 (765)
T PRK10049 119 -----------------------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA--- 172 (765)
T ss_pred -----------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH---
Confidence 112355566678999999999999999999999999999999999999988883
Q ss_pred hHHHHHHHhhccCCcc-----HHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHHHHHH
Q 004622 365 NKKFCVTRISKSKSIS-----VDFRLSRGIAQV-----NEGKY---ASAISIFDQILKEDPMYPEA-------LIGRGTA 424 (741)
Q Consensus 365 ~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~la~~ 424 (741)
+..+.. .|.. ............ ..+++ ++|+..++.+++..|.++.. .......
T Consensus 173 -----l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 173 -----IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred -----HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 343333 2221 112222222222 22345 78999999999765444322 2221223
Q ss_pred HHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCH
Q 004622 425 RAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDF 499 (741)
Q Consensus 425 ~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~ 499 (741)
+...|++++|+..|+++++..|.. ..+...+|.++...|++++|+..|++++..+|.+ ......++.++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 467799999999999999886432 2344446999999999999999999999988766 45677788889999999
Q ss_pred HHHHHHHHHHHHhCCC-------------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Q 004622 500 NAAVEDLSACVKLDKE-------------N--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (741)
Q Consensus 500 ~~A~~~~~~al~~~p~-------------~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 564 (741)
++|+..++++....|. + ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999999998763 2 356788999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 565 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
|++++|+..+++++..+|++..+++.+|.++...|++++|...++++++..|++
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999998
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-29 Score=242.98 Aligned_cols=370 Identities=16% Similarity=0.079 Sum_probs=309.4
Q ss_pred CCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH
Q 004622 302 NGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV 381 (741)
Q Consensus 302 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 381 (741)
...+..++..|+.+|+.|+|++||++|.++++..|+.+.++.+++.||...|++++.++ ......+.+|..+
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vie--------d~TkALEl~P~Y~ 183 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIE--------DCTKALELNPDYV 183 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHH--------HHHHHhhcCcHHH
Confidence 56678899999999999999999999999999999999999999999999999999999 6777788899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH------------------HHHHh--------------CCCCH--------------
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFD------------------QILKE--------------DPMYP-------------- 415 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~------------------~al~~--------------~p~~~-------------- 415 (741)
.+++.++.++...|++++|+.... +.++. .|.-|
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 999999999999999999976542 22210 01101
Q ss_pred -------------HHHHHHHHHHHHcc---cHHHHHHHHHHHHHhC----CCc---------HHHHHHHHHHHHHcCChH
Q 004622 416 -------------EALIGRGTARAFQR---ELEAAISDFTEAIQSN----PSA---------GEAWKRRGQARAALGESV 466 (741)
Q Consensus 416 -------------~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~~~~~ 466 (741)
++...-+.-+...+ .|.+|...+.+..... ..+ ..++...|..++-.|++-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 00001111111112 4555555555543221 112 567888899999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (741)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 546 (741)
.|...++.+|.++|.+...|+.+|.+|...++.++..+.|.++..++|+++.+|+..|.+++-++++++|+..|++++.+
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC------chH
Q 004622 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP------HLI 620 (741)
Q Consensus 547 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~ 620 (741)
+|++..++..++.+.+++++++++...|+.+....|..++++...|.++..++++++|++.|.+++++.|. + +
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~-~ 502 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN-A 502 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc-c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 4 2
Q ss_pred HHHHHHHHHHHH-hCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCCchhHhhhHHHHHhh
Q 004622 621 WNLTRWRNLCFN-AWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSRNIGAKDCIPRMYVK 681 (741)
Q Consensus 621 ~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (741)
.. +...|.+.. -.+++..|+...+...+.+| .++.+|+.+.+.+|+.++|++.|+....-
T Consensus 503 ~p-lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 503 AP-LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hh-hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33 444444333 34889999977777666666 57889999999999999999999887553
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=9.2e-27 Score=264.39 Aligned_cols=405 Identities=11% Similarity=-0.011 Sum_probs=339.3
Q ss_pred CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 004622 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146 (741)
Q Consensus 67 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 146 (741)
-++....-...+....|++++|+..|.+++..+|....++..+|.++...|++++|+..|+++++++|+++. +..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-a~~---- 87 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-YQR---- 87 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHH----
Confidence 344445666788899999999999999999999999999999999999999999999999999999999977 211
Q ss_pred HHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcc
Q 004622 147 EELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSD 226 (741)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (741)
T Consensus 88 -------------------------------------------------------------------------------- 87 (765)
T PRK10049 88 -------------------------------------------------------------------------------- 87 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchH
Q 004622 227 EAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHD 306 (741)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (741)
T Consensus 88 -------------------------------------------------------------------------------- 87 (765)
T PRK10049 88 -------------------------------------------------------------------------------- 87 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHH
Q 004622 307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLS 386 (741)
Q Consensus 307 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (741)
.+|..+...|++++|+..+++++...|++.. +..++.++...|++++|+. .+..+....|.+..+++.
T Consensus 88 ---~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~--------~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 88 ---GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR--------AMTQALPRAPQTQQYPTE 155 (765)
T ss_pred ---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCCCHHHHHH
Confidence 1344556678999999999999999999999 9999999999999999999 888888899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH-----HcccH---HHHHHHHHHHHHhCCCcHHH--
Q 004622 387 RGIAQVNEGKYASAISIFDQILKEDPMYPE-----ALIGRGTARA-----FQREL---EAAISDFTEAIQSNPSAGEA-- 451 (741)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~~~~---~~A~~~~~~~l~~~~~~~~~-- 451 (741)
+|.++...|..++|+..++++.. .|.... ....+..... ..+++ ++|+..++.+++..|.++..
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 99999999999999999987775 554211 1122222222 22345 78999999999764443322
Q ss_pred -----HHH-HHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHH
Q 004622 452 -----WKR-RGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAY 520 (741)
Q Consensus 452 -----~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~ 520 (741)
... ++ .+...|++++|+..|+++++..|.. ..+...+|.+|...|++++|+.+|++++..+|.+ ....
T Consensus 235 ~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 222 33 3467799999999999999986543 2344557999999999999999999999988776 3567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRN---------------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (741)
Q Consensus 521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 585 (741)
..++.++...|++++|+..++++....|. ...++..++.++...|++++|+..+++++...|+++
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 77888889999999999999999998763 245778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc
Q 004622 586 KAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS 652 (741)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 652 (741)
.++..+|.++...|++++|++.+++++.++|++ .. +++.+|.++...|++++|...++.+....|
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-~~-l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRN-IN-LEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998 44 499999999999999999988877766555
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7e-27 Score=237.80 Aligned_cols=290 Identities=18% Similarity=0.160 Sum_probs=143.3
Q ss_pred ChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHH
Q 004622 320 DSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYAS 399 (741)
Q Consensus 320 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 399 (741)
+..+|+..|.+.-...++...++..+|..||++++|+++.. ++..+-...|..++..-....+++...+--+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~--------~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAER--------IFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence 44455555555334444444444455555555555555544 3444333344333333333333333333333
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479 (741)
Q Consensus 400 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 479 (741)
--.+.+..+..+|+.|++|..+|.||..+++.+.|+++|+++++++|....+|..+|.=+....+++.|..+|++++..+
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33333444444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 004622 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (741)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (741)
|.+-.+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.++++|+.++|.++-..+..|.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP 617 (741)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 617 (741)
+++..+++++|+..+++..++.|++..+++.+|.+|.++|+.+.|+..|.-|..++|.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5555555555555555555555555555555555555555555555555555555444
No 21
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-25 Score=221.56 Aligned_cols=429 Identities=15% Similarity=0.119 Sum_probs=276.0
Q ss_pred HHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHH------HHhCCCC-----------------
Q 004622 46 LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKA------LQLDPTL----------------- 102 (741)
Q Consensus 46 ~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~p~~----------------- 102 (741)
++-.|+|.+|....+.-.-...+..+.+..+.|+.++++|++|+..+.++ +.-+|.+
T Consensus 59 l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~ 138 (611)
T KOG1173|consen 59 LYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMIN 138 (611)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccccccc
Confidence 57889999998887776333367777888899999999999999887722 2222222
Q ss_pred --hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccc
Q 004622 103 --LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLN 180 (741)
Q Consensus 103 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (741)
...++.+|.+|..+.+.++|...|..|+..|+.+.+ +...+-..........-. +...+.
T Consensus 139 ~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E-a~~~lvs~~mlt~~Ee~~-----------------ll~~l~ 200 (611)
T KOG1173|consen 139 LESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE-AFEKLVSAHMLTAQEEFE-----------------LLESLD 200 (611)
T ss_pred chhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH-HHHHHHHHHhcchhHHHH-----------------HHhccc
Confidence 115788999999999999999999999999999999 555555555555322110 000000
Q ss_pred cC---ccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCC
Q 004622 181 AN---DKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGS 257 (741)
Q Consensus 181 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (741)
-. ......+. .+++.. -+...+... ..
T Consensus 201 ~a~~~~ed~e~l~-----~lyel~---------------~~k~~n~~~-~~----------------------------- 230 (611)
T KOG1173|consen 201 LAMLTKEDVERLE-----ILYELK---------------LCKNRNEES-LT----------------------------- 230 (611)
T ss_pred HHhhhhhHHHHHH-----HHHHhh---------------hhhhccccc-cc-----------------------------
Confidence 00 00000000 000000 000000000 00
Q ss_pred CCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCC
Q 004622 258 SDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNK 337 (741)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 337 (741)
..++...-......+.....+..+|..++|.+..++.+..++.+|-
T Consensus 231 ----------------------------------r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf 276 (611)
T KOG1173|consen 231 ----------------------------------RNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF 276 (611)
T ss_pred ----------------------------------cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC
Confidence 0000001111233444555555555555555555555555555555
Q ss_pred CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622 338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA 417 (741)
Q Consensus 338 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 417 (741)
+...+..... ++...|+..+-..+-.+.++.+|+.+..
T Consensus 277 h~~~~~~~ia------------------------------------------~l~el~~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 277 HLPCLPLHIA------------------------------------------CLYELGKSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred CcchHHHHHH------------------------------------------HHHHhcccchHHHHHHHHHHhCCCCCcc
Confidence 5444333222 4455555555555555666677777777
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (741)
Q Consensus 418 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (741)
|+.+|..|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|..++
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777666777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----c---cHHHHHHHHHHHHHcCChHHH
Q 004622 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR----N---FLEAWGHLTQFYQDLANSEKA 570 (741)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~---~~~~~~~la~~~~~~~~~~~A 570 (741)
+++-|.++|.+++.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-+ + -...+.+||.++.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 777777777777777777777777777777777777777777777763321 1 234577788888888888888
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 571 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 888888888888888888888888888888888888888888888877
No 22
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.5e-26 Score=219.69 Aligned_cols=471 Identities=15% Similarity=0.109 Sum_probs=334.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC------hhhHHHHHHHHHhhhcHHHH
Q 004622 15 KTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE------IQDICNRAFCYSQLELHKHV 88 (741)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~------~~~~~~~a~~~~~~g~~~~A 88 (741)
++.+++.....+++-.-++.+-+.--..++=+|++.+|.+||.+|..|+.+-|+ ...+.|.|..+.+.|+|+.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 344555554444444322222121113455679999999999999999985532 22367899999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC------------ChHHHHHHHHHHHHHHHHh
Q 004622 89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA--LH------------QSADLKQFLELEELLTAAK 154 (741)
Q Consensus 89 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~------------~~~~~~~~l~~~~~~~~~~ 154 (741)
+..|+.+++..|+... -+.+-.|++..|+-+...+.|++.+.+- |+ +.. +.+.+..-......+
T Consensus 296 insfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l-l~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL-LNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH-HHHHHhhHHHHHHHH
Confidence 9999999999997764 4556688899999999999999998652 11 111 222222111111000
Q ss_pred hhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCC
Q 004622 155 QDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSV 234 (741)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (741)
.+ -.++-..+......+. |.. .|.|........
T Consensus 374 ~~--------ka~aek~i~ta~kiia--pvi-------------------------------~~~fa~g~dwcl------ 406 (840)
T KOG2003|consen 374 EN--------KADAEKAIITAAKIIA--PVI-------------------------------APDFAAGCDWCL------ 406 (840)
T ss_pred hh--------hhhHHHHHHHHHHHhc--ccc-------------------------------ccchhcccHHHH------
Confidence 00 0000000000000000 000 011111100000
Q ss_pred CccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhH
Q 004622 235 PVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSD 314 (741)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 314 (741)
..+.. ..-.+-.-+.....+-.
T Consensus 407 -------e~lk~---------------------------------------------------s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 407 -------ESLKA---------------------------------------------------SQHAELAIDLEINKAGE 428 (840)
T ss_pred -------HHHHH---------------------------------------------------hhhhhhhhhhhhhHHHH
Confidence 00000 00000111233344667
Q ss_pred HHhcCChhhHHHHHHHhhccCCCCc-hhHHHHHHHHHchh--cHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHH
Q 004622 315 SASLNDSNTNSESYSKSSISDNKSS-DSTESRSKLSFKWD--MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391 (741)
Q Consensus 315 ~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 391 (741)
+.++|+++.|++++.-.-..+.+.. .+.+++..+++.+| ++..|.. +.......+..++.++...|.+.
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq--------yad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ--------YADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH--------HHHHHhcccccCHHHhhcCCcee
Confidence 8899999999998876655554332 34566777776654 3444444 55666677778888888999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 004622 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 471 (741)
+..|++++|...|++++..+....++++++|..+..+|+.++|+++|-+.-.+--++..+++.++.+|..+.+..+|+++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 99999999999999999988888899999999999999999999999988888788889999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (741)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 551 (741)
+.++..+-|+++.++..+|.+|-+.|+-.+|..++-...+..|.+.....++|..|....-+++|+.+|+++--+.|+..
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889877
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCC
Q 004622 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (741)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 600 (741)
.....++.|+.+.|+|.+|...|+..-...|.+.+.+..+..+.-.+|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 7777888899999999999999999999999988888888887777664
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.5e-24 Score=210.69 Aligned_cols=467 Identities=13% Similarity=0.062 Sum_probs=370.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004622 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (741)
Q Consensus 39 ~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 118 (741)
-|.....+..+..|+-|+-+-++...+..++...+-.|.++.-.|+|+.|.-..+.- .++-.+..+++..+.++.++.+
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHH
Confidence 344455889999999999999998888888888888999999999999998776655 6677788899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccc-hhhhhccCCCcc
Q 004622 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM-SETSENHNKSDI 197 (741)
Q Consensus 119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 197 (741)
+++|+..+.++ |-... .+...+.. ...+.
T Consensus 98 ~~~al~vl~~~----~~~~~---------------------------------------~f~yy~~~~~~~l~------- 127 (611)
T KOG1173|consen 98 WDQALLVLGRG----HVETN---------------------------------------PFSYYEKDAANTLE------- 127 (611)
T ss_pred HHHHHHHhccc----chhhc---------------------------------------chhhcchhhhceec-------
Confidence 99999877764 10000 00000000 00000
Q ss_pred cccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCC
Q 004622 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (741)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (741)
. +..
T Consensus 128 ---------------~---n~~---------------------------------------------------------- 131 (611)
T KOG1173|consen 128 ---------------L---NSA---------------------------------------------------------- 131 (611)
T ss_pred ---------------c---Ccc----------------------------------------------------------
Confidence 0 000
Q ss_pred CCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc---
Q 004622 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM--- 354 (741)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--- 354 (741)
.+....+.++..+..-|..+...+++++|...|.+++..++..-++...+....+-...
T Consensus 132 ------------------~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~ 193 (611)
T KOG1173|consen 132 ------------------GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEF 193 (611)
T ss_pred ------------------cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHH
Confidence 00011123334455568888889999999999999999998887776666554442220
Q ss_pred -------HHHHHHHHHHhHHHHHHH-----------------hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 355 -------LKETSNEAKRNKKFCVTR-----------------ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE 410 (741)
Q Consensus 355 -------~~~a~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 410 (741)
+..-..+-.......++. ....-..+.+.....+..++..++|.+..++++..++.
T Consensus 194 ~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~ 273 (611)
T KOG1173|consen 194 ELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK 273 (611)
T ss_pred HHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh
Confidence 000000000001111110 01122356678889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004622 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490 (741)
Q Consensus 411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 490 (741)
+|-++..+-..-.++...|+..+-...-.+.++..|+.+..|+..|..|...|++.+|.++|.++..++|....+|...|
T Consensus 274 dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fg 353 (611)
T KOG1173|consen 274 DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFG 353 (611)
T ss_pred CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHh
Confidence 99998877665559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Q 004622 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570 (741)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 570 (741)
..+...|..++|+.+|..|-++-|........+|.-|.++++++-|..+|.+++.+.|.+|-++..+|.+.+..+.|.+|
T Consensus 354 hsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 354 HSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred HHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCc----c---cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHH
Q 004622 571 LECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLC 643 (741)
Q Consensus 571 ~~~~~~al~~~p----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 643 (741)
..+|+.++..-+ . -...+.++|.++.+++.+++|+..|++++.+.|.+ ... +..+|.+|..+|+++.|+..
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~-~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-AST-HASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhH-HHHHHHHHHHhcChHHHHHH
Confidence 999999994322 1 24568999999999999999999999999999998 444 99999999999999999977
Q ss_pred HHhhccCCc
Q 004622 644 TRLLKSTVS 652 (741)
Q Consensus 644 ~~~~~~~~~ 652 (741)
|.......|
T Consensus 512 fhKaL~l~p 520 (611)
T KOG1173|consen 512 FHKALALKP 520 (611)
T ss_pred HHHHHhcCC
Confidence 766544444
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8.9e-26 Score=229.79 Aligned_cols=283 Identities=16% Similarity=0.146 Sum_probs=256.9
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (741)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 448 (741)
.+..+....+....++..+|..|+..++|++|..+|+.+-+..|-..+..-....+++.+.+--+---..+..+..+|+.
T Consensus 341 ~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s 420 (638)
T KOG1126|consen 341 LFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS 420 (638)
T ss_pred HHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC
Confidence 55666667777778889999999999999999999999999999877777777778887777666556667788899999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004622 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (741)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 528 (741)
|+.|..+|+||..+++.+.|++.|+++++++|....+|..+|.-+.....++.|..+|++++..+|.+..+|+.+|.+|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 529 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (741)
++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..+
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcc
Q 004622 609 SSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSF 653 (741)
Q Consensus 609 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 653 (741)
++..++-|++ ..+++.+|.+|.+.|+.+.|+.-|......+|.
T Consensus 581 EeLk~~vP~e--s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 581 EELKELVPQE--SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhCcch--HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999997 444999999999999999999877777666663
No 25
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=9.2e-24 Score=197.09 Aligned_cols=336 Identities=15% Similarity=0.108 Sum_probs=247.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
..+.++|..|++..|+..|-.|++.+ ++..+++.||.+|+.+|+-..|+.++.++|++.|++..|+..+|.+++++|++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 45667789999999999999999999 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (741)
++|...|..+|..+|++.. ....-..+.....
T Consensus 123 e~A~~DF~~vl~~~~s~~~-~~eaqskl~~~~e----------------------------------------------- 154 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGL-VLEAQSKLALIQE----------------------------------------------- 154 (504)
T ss_pred HHHHHHHHHHHhcCCCcch-hHHHHHHHHhHHH-----------------------------------------------
Confidence 9999999999999998766 2221111111110
Q ss_pred cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (741)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (741)
T Consensus 155 -------------------------------------------------------------------------------- 154 (504)
T KOG0624|consen 155 -------------------------------------------------------------------------------- 154 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (741)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~ 359 (741)
...+......++..|++..|+....+.+++.|-+...+...+.||...|+...|+
T Consensus 155 -------------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 155 -------------------------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred -------------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence 0111122334556788899999999999999999988888888888888888888
Q ss_pred HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (741)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 439 (741)
. .+..+.+....+.+.++.++..++..|+.+.++...++.++.+|++-..+-. |-+.....+.++..
T Consensus 210 ~--------Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----YKklkKv~K~les~- 276 (504)
T KOG0624|consen 210 H--------DLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----YKKLKKVVKSLESA- 276 (504)
T ss_pred H--------HHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----HHHHHHHHHHHHHH-
Confidence 8 5555666667778888888888888888888888888888888876443321 11112222222221
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004622 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (741)
Q Consensus 440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 515 (741)
.-....++|.++++..++.++.+|..+. ....+..|+..-|++.+|+..+.+++..+|+
T Consensus 277 -----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 277 -----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred -----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 1223456677777777777777776433 3344556666777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 004622 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (741)
Q Consensus 516 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 559 (741)
+..++...+.+|.....|+.|+..|+++.+.++++..+...+-.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 77777777777777777777777777777777777665554443
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.2e-23 Score=199.39 Aligned_cols=295 Identities=16% Similarity=0.111 Sum_probs=235.0
Q ss_pred HHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004622 345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA 424 (741)
Q Consensus 345 la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 424 (741)
+..++.+....+++... ........-|.+.-.-...|.+.+.+.|+++|+..|+.+.+.+|-..+-.-....+
T Consensus 233 ~~~a~~el~q~~e~~~k-------~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQK-------KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 44455555555555553 22233334566666677788888888999999999999999888776666666666
Q ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (741)
Q Consensus 425 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (741)
++-..+-.+-.-..+.+..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+.
T Consensus 306 LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 306 LYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 66666555555555666777777778888888888888899999999999999999989999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (741)
Q Consensus 505 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 584 (741)
.|++|++++|.+..+|+.+|..|.-++.+.=|+-+|++++...|.++..|..||.+|.+.++.++|+++|.+++.....+
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHhhhhc-------CCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhc
Q 004622 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM-------MPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLK 648 (741)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 648 (741)
..++..+|.+|.++++.++|..+|++.++.. |.. ..+ ...++..+.+.+++++|-.+...+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t-~ka-~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET-IKA-RLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH-HHH-HHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8889999999999999999999999888732 322 444 6678888899999999875444433
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.5e-23 Score=200.87 Aligned_cols=285 Identities=14% Similarity=0.112 Sum_probs=245.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRG 456 (741)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la 456 (741)
..+.-+..+..++.+|+++.|++++.-.-+.+... ..+-.++..+++.+| ++..|..+...++..+..++.++.+.|
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg 497 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG 497 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC
Confidence 33455677888899999999999987665554443 344556666666643 788999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 536 (741)
++-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+...+--++..+++.++.+|..+.+..+|
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 99999999999999999999999889999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM 616 (741)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 616 (741)
++++.++..+-|++|.++..||.+|-+.|+-.+|..++-......|.+.+....+|..|....-+++|+.+|+++--+.|
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcc---cchhhHHHHhcCC
Q 004622 617 PHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSF---AGLTLMEILIPSS 666 (741)
Q Consensus 617 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g 666 (741)
+...| ...++.|+.+.|+|..|...|+.+....|. +...|.++.-..|
T Consensus 658 ~~~kw--qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 658 NQSKW--QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cHHHH--HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 86333 466789999999999999999998887773 3444455544444
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=3.2e-23 Score=220.22 Aligned_cols=298 Identities=15% Similarity=0.057 Sum_probs=194.3
Q ss_pred HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc----cH
Q 004622 306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI----SV 381 (741)
Q Consensus 306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~ 381 (741)
......|..+...|++++|+..|.+++..+|++..++..++.++...|++++|+.. +..+....+. ..
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~--------~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRI--------HQNLLSRPDLTREQRL 107 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHH--------HHHHhcCCCCCHHHHH
Confidence 34445677888888888888888888888888877777777777777777777773 3333222111 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRG 456 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la 456 (741)
..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|++.+.++++..|.+. ..+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45666677777777777777777777776666667777777777777777777777777776665432 2344566
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKK 535 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~ 535 (741)
.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 666666777777777777766666666666666666666777777777777666666654 2445566666666666666
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH--CCChHHHHHHHHHhh
Q 004622 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGS 612 (741)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 612 (741)
|+..++++++..|+... +..++.++...|++++|+..++++++..|++......++..... .|+..+|+..+++.+
T Consensus 268 A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 268 GLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 66666666666665433 35666666666666666666666666666655443333332221 345666666655554
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.8e-23 Score=198.35 Aligned_cols=358 Identities=13% Similarity=-0.018 Sum_probs=304.8
Q ss_pred CchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCC--cc
Q 004622 303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKS--IS 380 (741)
Q Consensus 303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~ 380 (741)
..+..+...|..+-+.|..+.|+..+..++...|-+..++..++.+..... ........-| ..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e---------------~~~~l~~~l~~~~h 226 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE---------------ILSILVVGLPSDMH 226 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH---------------HHHHHHhcCcccch
Confidence 446677788999999999999999999999999999999988887763221 1122222222 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 459 (741)
.-.-+.++.++....+.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-..+-.-...+++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 334456677777777999999999999887 7888888899999999999999999999999999998777777777777
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (741)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 539 (741)
+-.++-.+-.-....+..++.-.++....+|+.|.-.++.++|+.+|+++++++|+...+|..+|.-|..+++...|+..
T Consensus 307 Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 307 YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 77776555555666777888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch
Q 004622 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL 619 (741)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 619 (741)
|++|++++|.+..+|+.+|++|..++...=|+-+|+++....|.++..|..+|.+|.++++.++|+++|++++.....+
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte- 465 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE- 465 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhhccC-------Cc---ccchhhHHHHhcCCCchhHhhhHHH
Q 004622 620 IWNLTRWRNLCFNAWPFIRRRLLCTRLLKST-------VS---FAGLTLMEILIPSSRNIGAKDCIPR 677 (741)
Q Consensus 620 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (741)
..++..+|.+|.++++..+|..+|...... .+ .+...|+..+...+++++|-.+-..
T Consensus 466 -~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 466 -GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred -hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344999999999999999999877664221 11 3555688888999999998665433
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.6e-23 Score=218.29 Aligned_cols=301 Identities=15% Similarity=0.054 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRG 456 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la 456 (741)
....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44566779999999999999999999999999999999999999999999999999999998754332 35688999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIG 531 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~ 531 (741)
.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999887753 35667899999999
Q ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (741)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (741)
++++|+..|+++++..|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 46688899999999999999999999
Q ss_pred hhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcc--cchhhHHHHhc---CCCchhHhhhHHHHHhhhhh
Q 004622 611 GSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSF--AGLTLMEILIP---SSRNIGAKDCIPRMYVKRFT 684 (741)
Q Consensus 611 al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 684 (741)
++...|+. .. +..++.++...|++++|+..++......|. ....+...+.. .|+..+++..++.+..+.+.
T Consensus 275 ~~~~~p~~--~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEEYPGA--DL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHhCCCc--hH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 99999875 44 578999999999999999877765444452 22333434332 56899999999988876643
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=4.7e-21 Score=212.94 Aligned_cols=436 Identities=10% Similarity=-0.024 Sum_probs=326.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCh-hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHH--HHHHH
Q 004622 38 TARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK--GCAFS 114 (741)
Q Consensus 38 ~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~--g~~~~ 114 (741)
..+..+-..+.+|+|..|++.|.++++.+|+. .....++.++...|++++|+..|++++ +|.+...+..+ |.++.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHH
Confidence 33466666899999999999999999999554 333488889999999999999999999 55555555555 88999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCC
Q 004622 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (741)
Q Consensus 115 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 194 (741)
.+|++++|+..|+++++.+|+++. +..++....... . +...++ ..+......+|
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~-~l~gLa~~y~~~--~---------q~~eAl---~~l~~l~~~dp----------- 167 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPD-LISGMIMTQADA--G---------RGGVVL---KQATELAERDP----------- 167 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHhhc--C---------CHHHHH---HHHHHhcccCc-----------
Confidence 999999999999999999999988 554442222222 0 000000 00000000000
Q ss_pred CcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccc
Q 004622 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (741)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (741)
T Consensus 168 -------------------------------------------------------------------------------- 167 (822)
T PRK14574 168 -------------------------------------------------------------------------------- 167 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc
Q 004622 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (741)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 354 (741)
. ......++..+...++..+|+..|+++++.+|++..++..+..++...|-
T Consensus 168 ----------------------------~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 168 ----------------------------T-VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred ----------------------------c-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 0 01112334444446777779999999999999999999999999988888
Q ss_pred HHHHHHHHHHhHHHHHHHhhccCCccH--HHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCH-----
Q 004622 355 LKETSNEAKRNKKFCVTRISKSKSISV--DFRLSRGIAQVNEG------------KYASAISIFDQILKEDPMYP----- 415 (741)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~g------------~~~~A~~~~~~al~~~p~~~----- 415 (741)
...|.+ ....-........ ......+....+.+ -.+.|+..++..+...+..|
T Consensus 219 ~~~a~~--------l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~ 290 (822)
T PRK14574 219 VEPALR--------LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQAD 290 (822)
T ss_pred cHHHHH--------HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchH
Confidence 877777 3332221111111 22222232233222 23557777777777433322
Q ss_pred --HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCHHHH
Q 004622 416 --EALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADIL 486 (741)
Q Consensus 416 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~ 486 (741)
.+..-.-.++...|++.+++..|+.+.... |-...+....|..|...+++++|+.+|..++.-.| .+....
T Consensus 291 ~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~ 370 (822)
T PRK14574 291 YQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDA 370 (822)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHH
Confidence 334455567778899999999999987554 33455778899999999999999999999988653 233345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622 487 HERGIVNFKFKDFNAAVEDLSACVKLDK---------------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (741)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 551 (741)
..|...|...+++++|..++++..+..| +...+...++.++...|++.+|.+.+++.+...|.++
T Consensus 371 ~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 371 DDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 7788899999999999999999988544 2246677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
..+..+|.++...|.+.+|...++.+..++|++..+...+|.++..++++.+|.......++..|++
T Consensus 451 ~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 451 NLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=4e-21 Score=213.55 Aligned_cols=441 Identities=12% Similarity=-0.034 Sum_probs=319.8
Q ss_pred HHHhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHH
Q 004622 10 RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHV 88 (741)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A 88 (741)
.+|.++...++..+.++++.++..+.+.. -.+.-+...|++++|+.++++++.-. .....+...|.+|..+|+|++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 46777778888888888888888754443 22222557899999999999999322 3333344457899999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCc
Q 004622 89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNS 168 (741)
Q Consensus 89 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 168 (741)
+..++++++.+|+++.++..++.++...|+.++|+..++++...+|.+.. . ..+ ......... .
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~-l~l--ayL~~~~~~---------~--- 185 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-Y-MTL--SYLNRATDR---------N--- 185 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-H-HHH--HHHHHhcch---------H---
Confidence 99999999999999999999999999999999999999999999999666 2 222 222210000 0
Q ss_pred cchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccc
Q 004622 169 MSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLR 248 (741)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (741)
...+......+.
T Consensus 186 ~~AL~~~ekll~-------------------------------------------------------------------- 197 (822)
T PRK14574 186 YDALQASSEAVR-------------------------------------------------------------------- 197 (822)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 000000000111
Q ss_pred cccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHH
Q 004622 249 EVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY 328 (741)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 328 (741)
..+...+....+-..+-+.|-...|.+..
T Consensus 198 ---------------------------------------------------~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 198 ---------------------------------------------------LAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred ---------------------------------------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 11233455566677777788888888766
Q ss_pred HHhhccCCCCch--hHHHHHHHHHchhcHHHH-H----HHHHHhHHHHHHHhhc---cCCcc----HHHHHHHHHHHHHc
Q 004622 329 SKSSISDNKSSD--STESRSKLSFKWDMLKET-S----NEAKRNKKFCVTRISK---SKSIS----VDFRLSRGIAQVNE 394 (741)
Q Consensus 329 ~~a~~~~p~~~~--~~~~la~~~~~~g~~~~a-~----~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~a~~~~~~ 394 (741)
.+--........ .....+.-..+.+..... . ....++... .+.+.. ..|.. ..+.+..-.++...
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~-~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD-YQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH-HHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 653322211111 111222222222211110 0 111122211 112221 22322 33455666677889
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCChHH
Q 004622 395 GKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVE 467 (741)
Q Consensus 395 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~ 467 (741)
|++.+++..|+.+.... |--..+....|..|...+++++|+.+|..++...| ........|...+...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 99999999999887654 33456888899999999999999999999988653 233335678888999999999
Q ss_pred HHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622 468 AIQDLSKALEFEP---------------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (741)
Q Consensus 468 A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 532 (741)
|..++++..+..| +-.+....++.++...|++.+|.+.+++.+...|.+..++..+|.++...|.
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999988555 2246778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHH
Q 004622 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (741)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 588 (741)
+.+|...++.+...+|++..+...+|.++..++++.+|......+++..|+++.+.
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999999999999999999999999999999999999999999987543
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.93 E-value=3.7e-23 Score=193.09 Aligned_cols=307 Identities=18% Similarity=0.204 Sum_probs=277.3
Q ss_pred chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622 304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383 (741)
Q Consensus 304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (741)
..+...++|..++..|++..|+..|..+++.+|++-.+++..+.+|..+|+...++. .+.++....|....+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~--------Dl~rVlelKpDF~~A 108 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQ--------DLSRVLELKPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchh--------hHHHHHhcCccHHHH
Confidence 455667899999999999999999999999999999999999999999999999999 788888899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EAL------------IGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~------------~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 448 (741)
.+..|.+++.+|.+++|+..|+.+++.+|++. ++. ......++-.|+...|+++....++..|.+
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999652 222 233445566789999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------
Q 004622 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT------- 521 (741)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------- 521 (741)
...+...+.||...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854321
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHH
Q 004622 522 -----YLGLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (741)
Q Consensus 522 -----~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 592 (741)
.-+......++|.++++..++.++.+|..+. ....+..|+..-+++.+|+..+.+++.++|++..++...|
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 1234456788999999999999999998544 4456788899999999999999999999999999999999
Q ss_pred HHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 593 LLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
.+|.....|+.|+..|+++.+.++++
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999988
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=7.4e-21 Score=199.92 Aligned_cols=362 Identities=13% Similarity=0.019 Sum_probs=235.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
.+++-+|-.|++++|..++.++|.++ .++..|+.+|.+|.++|+.++|+..+-.|-.++|++.+-|..++....++|++
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 56778899999999999999999999 78888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (741)
+.|.-+|.+|++.+|.+....+..............+ +....+.+...| ...+..
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~A---------------m~~f~~l~~~~p-~~d~er--------- 278 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRA---------------METFLQLLQLDP-PVDIER--------- 278 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHH---------------HHHHHHHHhhCC-chhHHH---------
Confidence 9999999999999999988443333333222211111 111111111111 000000
Q ss_pred cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (741)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (741)
+..........+.......++++.+.. ...
T Consensus 279 --------------------~~d~i~~~~~~~~~~~~~e~a~~~le~---~~s--------------------------- 308 (895)
T KOG2076|consen 279 --------------------IEDLIRRVAHYFITHNERERAAKALEG---ALS--------------------------- 308 (895)
T ss_pred --------------------HHHHHHHHHHHHHHhhHHHHHHHHHHH---HHh---------------------------
Confidence 000000000000000000000000000 000
Q ss_pred ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhcc------------------------C
Q 004622 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS------------------------D 335 (741)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------------~ 335 (741)
........+....+...+.+...++.|+......... .
T Consensus 309 ------------------~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 309 ------------------KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred ------------------hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 0000011223335566666667777776666554430 1
Q ss_pred CCCch--hHH-HHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 336 NKSSD--STE-SRSKLSFKWDMLKETSNEAKRNKKFCVTRISK---SKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409 (741)
Q Consensus 336 p~~~~--~~~-~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 409 (741)
|++.. ... .+..++......+.... ....+.. .....++.++.++..+...|++.+|+.+|..+..
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~--------ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEA--------LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHH--------HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 11111 112 22222323222221111 1111111 1345668899999999999999999999999988
Q ss_pred hCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 004622 410 EDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ 482 (741)
Q Consensus 410 ~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 482 (741)
..+. +..+|+.+|.||..+|.+++|+++|.+++...|++.++...++.++..+|+.++|.+.+.....-++.+
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 7654 367999999999999999999999999999999999999999999999999999999999887544332
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHH
Q 004622 483 ---ADILHERGIVNFKFKDFNAAV 503 (741)
Q Consensus 483 ---~~~~~~la~~~~~~~~~~~A~ 503 (741)
.........++.+.|+.++=+
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHH
Confidence 235566777777777776633
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.9e-22 Score=198.44 Aligned_cols=382 Identities=17% Similarity=0.120 Sum_probs=262.8
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 004622 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (741)
Q Consensus 74 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 153 (741)
..+.+.+..|+|+.|+..|..++.++|.|--.|..+..+|..+|+|++|+..-.+..++.|+=+.
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k--------------- 71 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK--------------- 71 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh---------------
Confidence 45778889999999999999999999999889999999999999999999999998888876333
Q ss_pred hhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCC
Q 004622 154 KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSS 233 (741)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (741)
T Consensus 72 -------------------------------------------------------------------------------- 71 (539)
T KOG0548|consen 72 -------------------------------------------------------------------------------- 71 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhh
Q 004622 234 VPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSS 313 (741)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 313 (741)
.+..+|.
T Consensus 72 -------------------------------------------------------------------------gy~r~Ga 78 (539)
T KOG0548|consen 72 -------------------------------------------------------------------------GYSRKGA 78 (539)
T ss_pred -------------------------------------------------------------------------HHHHhHH
Confidence 2345678
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHH-------------HhHHHHH---HHhhccC
Q 004622 314 DSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK-------------RNKKFCV---TRISKSK 377 (741)
Q Consensus 314 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~-------------~~~~~~~---~~~~~~~ 377 (741)
.++-.|+|++|+..|.+.++.+|++...+..++.++.......+...... ...+-++ .......
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 88889999999999999999999999999999988832211000000000 0000000 0000111
Q ss_pred CccH--------------------------------------------------------------HHHHHHHHHHHHcC
Q 004622 378 SISV--------------------------------------------------------------DFRLSRGIAQVNEG 395 (741)
Q Consensus 378 ~~~~--------------------------------------------------------------~~~~~~a~~~~~~g 395 (741)
|.+. .-.-.+|...+...
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111 12234555555555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCChHHH
Q 004622 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEA 468 (741)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~la~~~~~~~~~~~A 468 (741)
++..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++...... .+...+|..+...++++.|
T Consensus 239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 5555555555555555 4455555555555555555555555555444332211 1222334444445555555
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (741)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 548 (741)
+.+|.+++.-..+ ..+.-+....+++++......-.+|.-..--..-|..++..|+|..|+..|.+++..+|
T Consensus 318 i~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 318 IKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 5555554443322 23333344445555555544445555555566679999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHH
Q 004622 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRN 628 (741)
Q Consensus 549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la 628 (741)
+++..|.+.|.+|...|.+..|+...+.+++++|+....|...|.++..+.+|++|++.|+++++.+|++ .+. ...+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~-~~~~~ 467 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEA-IDGYR 467 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 444 66777
Q ss_pred HHHHhC
Q 004622 629 LCFNAW 634 (741)
Q Consensus 629 ~~~~~~ 634 (741)
+|...+
T Consensus 468 rc~~a~ 473 (539)
T KOG0548|consen 468 RCVEAQ 473 (539)
T ss_pred HHHHHh
Confidence 777653
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=3.9e-20 Score=186.85 Aligned_cols=335 Identities=12% Similarity=0.006 Sum_probs=284.1
Q ss_pred chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622 304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383 (741)
Q Consensus 304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (741)
....+..-+..+-+.+-++-|...|..++...|.....+...+..--..|..++-.. .+.++....|.....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A--------llqkav~~~pkae~l 586 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA--------LLQKAVEQCPKAEIL 586 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH--------HHHHHHHhCCcchhH
Confidence 344556667788888999999999999999999999999888888777787776666 777777888888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
|+..+..+...|+...|..++.++++.+|++.+.|+....+.....+++.|...|.++....| ...+|+.-+.....++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999988766 4678888899999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 543 (741)
+.++|++.++++++.+|.....|..+|+++.++++.+.|...|...++..|..+..|..++.+-...|+.-.|..+++++
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH------------------------------HHHHHH
Q 004622 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA------------------------------YHLRGL 593 (741)
Q Consensus 544 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------~~~la~ 593 (741)
.-.+|.+...|.....+-.+.|+.+.|.....++++..|++... +...|.
T Consensus 746 rlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 746 RLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred HhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 99999999999999999999999999999999999988776443 444555
Q ss_pred HHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc
Q 004622 594 LLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS 649 (741)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 649 (741)
++....++++|.++|.+++..+|++ ... |.+.-..+...|.-++-...+.....
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~-GD~-wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDN-GDA-WAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcc-chH-HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 5666666666666666666666655 333 44555555555554444444444333
No 37
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=1.4e-19 Score=205.48 Aligned_cols=453 Identities=11% Similarity=-0.038 Sum_probs=313.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc---CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHc
Q 004622 42 ELAKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSAL 116 (741)
Q Consensus 42 ~~~~~~~~g~~~~Ai~~~~~al~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~ 116 (741)
.+..+...|++++|++.|....... ++...|..+..++.+.++++.|...+..++.. .|+ ...+..+..+|.+.
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~ 171 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcC
Confidence 3555788999999999999987643 56777888888999999999999999888764 464 66888889999999
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCc
Q 004622 117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD 196 (741)
Q Consensus 117 g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 196 (741)
|++++|...|++..+ |+..
T Consensus 172 g~~~~A~~lf~~m~~--~~~~----------------------------------------------------------- 190 (697)
T PLN03081 172 GMLIDARRLFDEMPE--RNLA----------------------------------------------------------- 190 (697)
T ss_pred CCHHHHHHHHhcCCC--CCee-----------------------------------------------------------
Confidence 999999999887521 1111
Q ss_pred ccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccC
Q 004622 197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ 276 (741)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (741)
T Consensus 191 -------------------------------------------------------------------------------- 190 (697)
T PLN03081 191 -------------------------------------------------------------------------------- 190 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCC-CchhHHHHHHHHHchhcH
Q 004622 277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNK-SSDSTESRSKLSFKWDML 355 (741)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~ 355 (741)
.+..+...+.+.|++++|+..|+++.+..+. +...+..+...+...|..
T Consensus 191 ------------------------------t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 191 ------------------------------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred ------------------------------eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 1122344456667778888888887765432 334555556666666666
Q ss_pred HHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 004622 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435 (741)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 435 (741)
..+... ...........+..++..+...|.+.|++++|...|++. .+.+..+|..+...|.+.|++++|+
T Consensus 241 ~~~~~l-------~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 241 RAGQQL-------HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHHH-------HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHH
Confidence 655442 111112222334455666777777888888888887765 3445677778888888888888888
Q ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622 436 SDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (741)
Q Consensus 436 ~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (741)
+.|++..+.. .-+...+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 8887776542 2244567777777778888888888887777765 44666777778888888888888888877643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--ccHHHHHH
Q 004622 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHL 590 (741)
Q Consensus 514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 590 (741)
.+...|..+...|.+.|+.++|+..|+++.+.. ..+...+..+...+...|..++|..+|+.+.+..+ .+...|..
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 345677777778888888888888888776643 22355666777777778888888888887765322 22456777
Q ss_pred HHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc---ccchhhHHHHhcCCC
Q 004622 591 RGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSSR 667 (741)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 667 (741)
+..++.+.|++++|.+.+++.- ..|+. .. |..+...+...|+++.|....+.+....| ..+..|+..|...|+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~-~~p~~--~~-~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAP-FKPTV--NM-WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCC-CCCCH--HH-HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 7778888888888887777642 33332 33 66777777778888877765555433333 466777778888888
Q ss_pred chhHhhhHHHHHhhhh
Q 004622 668 NIGAKDCIPRMYVKRF 683 (741)
Q Consensus 668 ~~~A~~~~~~~~~~~~ 683 (741)
+++|...++.+-...+
T Consensus 544 ~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 544 QAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8888888877766554
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=5.6e-20 Score=193.37 Aligned_cols=368 Identities=11% Similarity=0.016 Sum_probs=291.4
Q ss_pred hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHH
Q 004622 305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR 384 (741)
Q Consensus 305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (741)
.......++.++..|++++|+.++.+++..+|.++.++..+|.+|-..|+.+++.. +.-.+.-.+|.+.+.|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~--------~~llAAHL~p~d~e~W 210 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALN--------FWLLAAHLNPKDYELW 210 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHH--------HHHHHHhcCCCChHHH
Confidence 34555668889999999999999999999999999999999999999999999999 6666777888889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHH
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRGQAR 459 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~ 459 (741)
..++.....+|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|... ......+..+
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999321 2334557778
Q ss_pred HHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------
Q 004622 460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE-------------------- 515 (741)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-------------------- 515 (741)
...++-+.|++.++.++... -...+.+..++.+++....++.|.......... .++
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 88888899999999999843 223456778899999999999998887765541 000
Q ss_pred ------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc-ccHH
Q 004622 516 ------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSK 586 (741)
Q Consensus 516 ------~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 586 (741)
+..+ ...++.+....++..+++..+..--...| +.+..+..++.++...|++.+|+.+|..+....+ ++..
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 1122 44445555555555566555543333224 3477889999999999999999999999887766 3467
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCC----c--------cc
Q 004622 587 AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTV----S--------FA 654 (741)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~--------~~ 654 (741)
+|+.+|.||..+|.+++|++.|++++...|.+ ..+ ...++.++.++|+.++|++....+...+ + ..
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~-~D~-Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAPDN-LDA-RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc-hhh-hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 89999999999999999999999999999998 555 8899999999999999996555432122 1 12
Q ss_pred chhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622 655 GLTLMEILIPSSRNIGAKDCIPRMYVKR 682 (741)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (741)
......++...|+.++=+..--.++..+
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3445577788888777555554444444
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.89 E-value=1.4e-19 Score=205.37 Aligned_cols=450 Identities=9% Similarity=-0.072 Sum_probs=346.0
Q ss_pred HhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--CChhhHHHHHHHHHhhhcHHHHH
Q 004622 12 RLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVI 89 (741)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~ 89 (741)
+.+...+++.....+.+-.++.|+...--..+..+...++++.|.+.+...+... ++...+..+..+|.+.|++++|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 3344445544444443322222333333455556778999999999999998866 78888888999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCcc
Q 004622 90 RDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSM 169 (741)
Q Consensus 90 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (741)
..|++... | +...|..+...|.+.|++++|+..|++.+...+........
T Consensus 179 ~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~--------------------------- 228 (697)
T PLN03081 179 RLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV--------------------------- 228 (697)
T ss_pred HHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH---------------------------
Confidence 99998754 4 44578999999999999999999999987655433220000
Q ss_pred chhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCccccc
Q 004622 170 SSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLRE 249 (741)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (741)
T Consensus 229 -------------------------------------------------------------------------------- 228 (697)
T PLN03081 229 -------------------------------------------------------------------------------- 228 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHH
Q 004622 250 VSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYS 329 (741)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 329 (741)
.+-..+.+.|+...+.+.+.
T Consensus 229 ------------------------------------------------------------~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 229 ------------------------------------------------------------VMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred ------------------------------------------------------------HHHHHHhcCCcHHHHHHHHH
Confidence 00011112233444555555
Q ss_pred HhhccC-CCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 330 KSSISD-NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL 408 (741)
Q Consensus 330 ~a~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 408 (741)
.+.+.. ..+...++.+...|.+.|+.++|.. .+..+. +.+...|..+...|...|++++|+.+|++..
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~--------vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARC--------VFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHH--------HHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444432 2366677888888999999988888 444443 3456788889999999999999999999987
Q ss_pred HhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 004622 409 KED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486 (741)
Q Consensus 409 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 486 (741)
... ..+..++..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~ 394 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISW 394 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeH
Confidence 643 2247788899999999999999999999998875 55667888999999999999999999998754 366789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH
Q 004622 487 HERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD 563 (741)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~ 563 (741)
..+...|.+.|+.++|++.|++..+.. .-+..++..+...+...|..++|..+|+.+.+..+ .+...|..+..++.+
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999988753 23456677888889999999999999999986432 235678899999999
Q ss_pred cCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHH
Q 004622 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLC 643 (741)
Q Consensus 564 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 643 (741)
.|+.++|.+.+++. ...|+ ..+|..+...+...|+.+.|...+++.+.+.|++ ... |..++.+|...|++++|...
T Consensus 475 ~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~-y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 475 EGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNN-YVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred cCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-Ccc-hHHHHHHHHhCCCHHHHHHH
Confidence 99999999998764 23443 6779999999999999999999999999999987 455 88999999999999999988
Q ss_pred HHhhcc
Q 004622 644 TRLLKS 649 (741)
Q Consensus 644 ~~~~~~ 649 (741)
++.+..
T Consensus 551 ~~~m~~ 556 (697)
T PLN03081 551 VETLKR 556 (697)
T ss_pred HHHHHH
Confidence 877643
No 40
>PLN03077 Protein ECB2; Provisional
Probab=99.89 E-value=4.4e-19 Score=206.47 Aligned_cols=486 Identities=10% Similarity=-0.062 Sum_probs=299.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH
Q 004622 38 TARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSA 115 (741)
Q Consensus 38 ~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~ 115 (741)
..-..+.-|.+.|+++.|...|.+..+ ++...|..+...|.+.|++++|+..+++.... .|+.. .+..+..++..
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~-ty~~ll~a~~~ 300 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM-TITSVISACEL 300 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHh
Confidence 333455667888888888888887532 55566777888888888888888888887664 46543 56666777788
Q ss_pred cCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCC
Q 004622 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (741)
Q Consensus 116 ~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 195 (741)
.|+.+.|.+.+..+.+..-.........+....... +... .....+.
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-----------g~~~-----------------~A~~vf~----- 347 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL-----------GSWG-----------------EAEKVFS----- 347 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc-----------CCHH-----------------HHHHHHh-----
Confidence 888888888888887765322221111111111111 0000 0000000
Q ss_pred cccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCccccccc
Q 004622 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (741)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (741)
.+ .
T Consensus 348 ---------------------------~m---~----------------------------------------------- 350 (857)
T PLN03077 348 ---------------------------RM---E----------------------------------------------- 350 (857)
T ss_pred ---------------------------hC---C-----------------------------------------------
Confidence 00 0
Q ss_pred CCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhcc--CCCCchhHHHHHHHHHchh
Q 004622 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS--DNKSSDSTESRSKLSFKWD 353 (741)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g 353 (741)
......+..+...+.+.|++++|+..|++.... .|+.. .+..+...+...|
T Consensus 351 --------------------------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g 403 (857)
T PLN03077 351 --------------------------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLG 403 (857)
T ss_pred --------------------------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccc
Confidence 000112344556677777888888888876543 34443 3444444666777
Q ss_pred cHHHHHHHHHHhHHHHHHHhh-ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 004622 354 MLKETSNEAKRNKKFCVTRIS-KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432 (741)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 432 (741)
+++.+... ...+. .....+..++..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|+.+
T Consensus 404 ~~~~a~~l--------~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 404 DLDVGVKL--------HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred hHHHHHHH--------HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHH
Confidence 77777763 22222 22334455666777777788888888888776532 34567777777777888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (741)
Q Consensus 433 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (741)
+|+..|++.....+.+...+..+-..+...|+.+.+.+.+..+++... .+..+...+...|.+.|+.++|...|+..
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 888888777654444445555555566677777777777777666542 23445566667777777777777777664
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CcccHH
Q 004622 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DKRFSK 586 (741)
Q Consensus 512 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~ 586 (741)
+.+...|..+...|...|+.++|+..|++..+. .|+ ...+..+...+...|..++|..+|+.+... .|+ ..
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~ 626 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LK 626 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hH
Confidence 456667777777777777777777777776653 233 344555556677777777777777776633 233 45
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh---ccCCcccchhhHHHHh
Q 004622 587 AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL---KSTVSFAGLTLMEILI 663 (741)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~ 663 (741)
.|..+..++.+.|++++|.+.+++. ...|+. .. |..+-..+...|+.+.+....+.+ .+..+..+..|+.+|.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~--~~-~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM-PITPDP--AV-WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH--HH-HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 6777777777777777777777765 234442 22 445555556666666665433332 3333345666677777
Q ss_pred cCCCchhHhhhHHHHHhhhhh
Q 004622 664 PSSRNIGAKDCIPRMYVKRFT 684 (741)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~~~ 684 (741)
..|++++|......+-...++
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCC
Confidence 777777777777666555433
No 41
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-19 Score=171.99 Aligned_cols=287 Identities=14% Similarity=0.093 Sum_probs=180.5
Q ss_pred hHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHH
Q 004622 323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAIS 402 (741)
Q Consensus 323 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 402 (741)
-+..++-+-...-|++...+..++++++..|++++++. .++.....+|......-..|..+...|+++.-..
T Consensus 216 ~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~--------~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 216 SQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED--------IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH--------HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444455555666666666666666666666666 4455555555555555555666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (741)
Q Consensus 403 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (741)
+-...+..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|.+
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 66666666555555566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 004622 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG-LALS-SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (741)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 560 (741)
.+.|..+-.+|...|++.+|.-.-+.+++..|.+..++..+| .+++ .-.--++|...+++++.+.|....+-..++.+
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence 666666666666666666666666666666666666666554 2222 22334566666666666666666666666666
Q ss_pred HHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 561 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
+...|.+++++..+++.+...|+ ...+..+|.++...+.+++|.++|..++.++|.+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 66666666666666666666665 4456666666666666666666666666666665
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=3.9e-20 Score=171.96 Aligned_cols=233 Identities=14% Similarity=0.133 Sum_probs=221.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 464 (741)
..+|.+|+..|-+.+|.+.++..++..|. ++.+..++.+|.+..++..|+..+...++..|.+...+...+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 57899999999999999999999998886 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (741)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 544 (741)
.++|.++|+.+++.+|.+.++.-.+|..|+.-++.+-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCc---ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 545 QLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 545 ~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
.... .-.++|+++|.+....|++.-|..+|+-++..+|++.+++.++|.+-.+.|+.++|..++..+-...|.-
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 8753 2367999999999999999999999999999999999999999999999999999999999999998875
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.88 E-value=1.7e-17 Score=189.96 Aligned_cols=496 Identities=12% Similarity=-0.030 Sum_probs=308.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc---CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 117 (741)
...+++++.|++++|++.|......+ .+...+...-..+.+.|..++|...++.... | +...|..+-.++...|
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCc
Confidence 44566778899999999999987755 3333344455677788999999988877654 5 3457778888889999
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcc
Q 004622 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI 197 (741)
Q Consensus 118 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 197 (741)
++++|...|+.+.+..+.........+....... +... .....+.
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-----------G~vd-----------------~A~~vf~------- 496 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-----------GKVD-----------------AMFEVFH------- 496 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-----------cCHH-----------------HHHHHHH-------
Confidence 9999999999988776443221111111111000 0000 0000000
Q ss_pred cccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCC
Q 004622 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (741)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (741)
. ..
T Consensus 497 -------------------------e---M~------------------------------------------------- 499 (1060)
T PLN03218 497 -------------------------E---MV------------------------------------------------- 499 (1060)
T ss_pred -------------------------H---HH-------------------------------------------------
Confidence 0 00
Q ss_pred CCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCC-CCchhHHHHHHHHHchhcHH
Q 004622 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDN-KSSDSTESRSKLSFKWDMLK 356 (741)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~ 356 (741)
..........+..+...+.+.|++++|+..|..+....- .+...++.+...+.+.|+.+
T Consensus 500 --------------------~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 500 --------------------NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred --------------------HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 000001223555677777778888888888877765431 24566777777777888877
Q ss_pred HHHHHHHHhHHHHHHHhhc---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHH
Q 004622 357 ETSNEAKRNKKFCVTRISK---SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELE 432 (741)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 432 (741)
+|.. .+..+.. .-..+...+..+...|...|++++|.++|+.+.+.+ +.+...|..+...|.+.|+++
T Consensus 560 eA~~--------lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 560 RAFD--------VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHH--------HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence 7777 4444432 122345566667777778888888888888777765 345677777777888888888
Q ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 433 AAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (741)
Q Consensus 433 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (741)
+|...|.+..+. .|+ ...+..+...+...|++++|.+.+..+.+.. +.+...+..+...|.+.|++++|..+|+++
T Consensus 632 eAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888888777765 343 4567777777778888888888888777654 335667777788888888888888888777
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CcccH
Q 004622 510 VKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFS 585 (741)
Q Consensus 510 l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~ 585 (741)
.... ..+...|..+...|.+.|++++|++.|+++.... ..+...|..+...+.+.|++++|..++.++++. .|+ .
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~ 789 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-L 789 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-H
Confidence 6531 2345667777778888888888888888776542 223556666677777888888888888877754 333 3
Q ss_pred HHHHHHHHHHH----HC-------------------CChHHHHHHHHHhhhhc--CCchHHHHHHHHHHHHHhCCCHHHH
Q 004622 586 KAYHLRGLLLH----GL-------------------GQHKKAIKDLSSGSRTM--MPHLIWNLTRWRNLCFNAWPFIRRR 640 (741)
Q Consensus 586 ~~~~~la~~~~----~~-------------------g~~~~A~~~~~~al~~~--~~~~~~~~~~~la~~~~~~g~~~~A 640 (741)
..+..+-.++. +. +..+.|+.+|+++++.. |+. .. +..+-.|+...+....+
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~--~T-~~~vL~cl~~~~~~~~~ 866 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM--EV-LSQVLGCLQLPHDATLR 866 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH--HH-HHHHHHHhcccccHHHH
Confidence 33333322211 11 11345667777776543 332 33 33333556666667666
Q ss_pred HHHHHhhccC--Cc--ccchhhHHHHhcCCCc-hhHhhhHHHHHhhhhhccc
Q 004622 641 LLCTRLLKST--VS--FAGLTLMEILIPSSRN-IGAKDCIPRMYVKRFTDSL 687 (741)
Q Consensus 641 ~~~~~~~~~~--~~--~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 687 (741)
...+..+... .+ ..+..|...+ |++ .+|...|+.+....+....
T Consensus 867 ~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 867 NRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 6555543222 22 2344444433 333 4688888777766544333
No 44
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.88 E-value=4.5e-17 Score=186.54 Aligned_cols=490 Identities=10% Similarity=-0.025 Sum_probs=348.1
Q ss_pred hHHHHHhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHH
Q 004622 7 LDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHK 86 (741)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~ 86 (741)
+....+.....+++..++++.+-+-+.+..+.....+.-+.+.|....|...|..... ++...|..+-.++.+.|+++
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHH
Confidence 3344455666777777777766554444444444445556788999999998887654 77777888888999999999
Q ss_pred HHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhhhccccccC
Q 004622 87 HVIRDCDKALQLDP-TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH-QSADLKQFLELEELLTAAKQDRSVTCEYD 164 (741)
Q Consensus 87 ~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 164 (741)
+|...++.+.+... -+...+..+..+|.+.|+.++|...|+++.+.... +.. ....+....... +.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv-TynaLI~gy~k~-----------G~ 522 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH-TFGALIDGCARA-----------GQ 522 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHC-----------cC
Confidence 99999999988653 24567888999999999999999999999876543 222 222221111110 00
Q ss_pred cCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccC
Q 004622 165 VSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHIN 244 (741)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (741)
.. .....+. . ..
T Consensus 523 ~e-----------------eAl~lf~--------------------------------~---M~---------------- 534 (1060)
T PLN03218 523 VA-----------------KAFGAYG--------------------------------I---MR---------------- 534 (1060)
T ss_pred HH-----------------HHHHHHH--------------------------------H---HH----------------
Confidence 00 0000000 0 00
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhH
Q 004622 245 GKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTN 324 (741)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 324 (741)
.....-....+..+-..+.+.|++++|
T Consensus 535 -----------------------------------------------------~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 535 -----------------------------------------------------SKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred -----------------------------------------------------HcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 000011234677788999999999999
Q ss_pred HHHHHHhhccC---CCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhcc-CCccHHHHHHHHHHHHHcCCHHHH
Q 004622 325 SESYSKSSISD---NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKS-KSISVDFRLSRGIAQVNEGKYASA 400 (741)
Q Consensus 325 ~~~~~~a~~~~---p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A 400 (741)
.+.|.++.... ..+...+..+...|.+.|++++|.. .+..+... -+.+...|..+...|.+.|++++|
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e--------lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE--------VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 99999997631 2345678888999999999999999 55555543 366778899999999999999999
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622 401 ISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (741)
Q Consensus 401 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (741)
+.+|+++... .|+ ...|..+...+.+.|++++|.+.+..+.+.. +.+...+..+...|...|++++|...|+++..
T Consensus 634 l~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 634 LSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999876 454 7889999999999999999999999998864 34677899999999999999999999999876
Q ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHH
Q 004622 478 FE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEA 553 (741)
Q Consensus 478 ~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~ 553 (741)
.. ..+...|..+...|.+.|++++|+++|+++.... ..+...+..+...+.+.|++++|..++.++.+.. |+ ...
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~t 791 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVM 791 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHH
Confidence 42 2367889999999999999999999999987652 3356677778889999999999999999998864 43 334
Q ss_pred HHHHHHHHH----Hc-------------------CChHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622 554 WGHLTQFYQ----DL-------------------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 554 ~~~la~~~~----~~-------------------~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (741)
+..+..++. +. +..+.|+.+|++++.. .|+ ...+..+-.++...+....+...+
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~ 870 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLI 870 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHH
Confidence 443332211 11 1235688888888864 455 444554446777888888887777
Q ss_pred HHhhhh-cCCchHHHHHHHHHHHHHhCCCH-HHHHHHHHhh
Q 004622 609 SSGSRT-MMPHLIWNLTRWRNLCFNAWPFI-RRRLLCTRLL 647 (741)
Q Consensus 609 ~~al~~-~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~ 647 (741)
+..... .+.+ ...|..+-..+ |++ ++|+..+...
T Consensus 871 ~~m~~~~~~~~--~~~y~~Li~g~---~~~~~~A~~l~~em 906 (1060)
T PLN03218 871 ENLGISADSQK--QSNLSTLVDGF---GEYDPRAFSLLEEA 906 (1060)
T ss_pred HHhccCCCCcc--hhhhHHHHHhh---ccChHHHHHHHHHH
Confidence 664322 2222 22244444433 443 5788666654
No 45
>PLN03077 Protein ECB2; Provisional
Probab=99.88 E-value=1.8e-18 Score=201.35 Aligned_cols=355 Identities=9% Similarity=-0.059 Sum_probs=285.9
Q ss_pred HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc-cCCccHHHH
Q 004622 306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK-SKSISVDFR 384 (741)
Q Consensus 306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~ 384 (741)
..+..+...+.+.|++++|.+.|++... .+...++.+...|.+.|++++|... +..+.. .-..+...+
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~l--------f~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALET--------YALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHH--------HHHHHHhCCCCCceeH
Confidence 4566677888999999999999998754 5677899999999999999999994 443322 222233344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
..+-..+...|+++.|.+++..+.+.... +..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g 469 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNN 469 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCC
Confidence 44555788899999999999999887543 467888999999999999999999998643 35567889999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004622 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 542 (741)
++++|+..|+++....+.+...+..+-..+...|..+.+...+..+++.. ..+......+...|.+.|+.++|...|+.
T Consensus 470 ~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 470 RCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred CHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999987655577777888888999999999999999988863 23455667788999999999999999988
Q ss_pred HHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh---cCC
Q 004622 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT---MMP 617 (741)
Q Consensus 543 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~ 617 (741)
. +.+...|..+...|...|+.++|+..|++..+. .|+ ..++..+-..+.+.|+.++|.++|+...+. .|+
T Consensus 550 ~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 550 H----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred c----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 6 556889999999999999999999999998864 455 555666777899999999999999999843 344
Q ss_pred chHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc-CCcccchhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622 618 HLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS-TVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKR 682 (741)
Q Consensus 618 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (741)
... |..+..++.+.|++++|...++.+.- .++..+..|...+...|+.+.+....+.+....
T Consensus 625 --~~~-y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 625 --LKH-YACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred --hHH-HHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 355 89999999999999999988877632 223567788888888888888877666655443
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=3.3e-22 Score=200.91 Aligned_cols=260 Identities=17% Similarity=0.144 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622 383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (741)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 460 (741)
..+.+|..++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3346799999999999999999776554 488899999999999999999999999999999999988888888888 7
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE 538 (741)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~ 538 (741)
..+++++|+.+++++.+..+ ++..+.....++...++++++...+.++.... +.++..+..+|.++.+.|++++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999988765 56777888889999999999999999987654 6788999999999999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
.|+++++.+|+++.+...++.++...|+++++...+.......|+++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999888889889999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622 619 LIWNLTRWRNLCFNAWPFIRRRLLCTRL 646 (741)
Q Consensus 619 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 646 (741)
+.. +..+|.++...|+.++|..+++.
T Consensus 248 -~~~-~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 -PLW-LLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHH-HHHHHHHHT--------------
T ss_pred -ccc-ccccccccccccccccccccccc
Confidence 454 88999999999999999976554
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=5.5e-22 Score=199.27 Aligned_cols=269 Identities=19% Similarity=0.190 Sum_probs=125.4
Q ss_pred cCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHH-Hhhcc-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622 334 SDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVT-RISKS-KSISVDFRLSRGIAQVNEGKYASAISIFDQILKED 411 (741)
Q Consensus 334 ~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 411 (741)
..|. .....+|.+++..|++++|.. .+. .+... .|.+..+|..+|......++++.|+..|++++..+
T Consensus 5 ~~~~--~~~l~~A~~~~~~~~~~~Al~--------~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~ 74 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQRGDYEKALE--------VLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--ccccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3445 233466999999999999999 563 34444 57888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHH
Q 004622 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--PNSADILHER 489 (741)
Q Consensus 412 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 489 (741)
+.++..+..++.+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++.... +.++.++..+
T Consensus 75 ~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 75 KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred ccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999888888888 799999999999999987664 56777788888999999999999999987655 6788999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Q 004622 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (741)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 569 (741)
|.++.+.|++++|+.+++++++.+|+++.+...++.++...|+++++...+.......|+++..+..+|.++...|++++
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 570 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
|+.+|++++...|+++..+..+|.++...|+.++|..++++++..
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999988753
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-18 Score=178.12 Aligned_cols=412 Identities=15% Similarity=0.099 Sum_probs=313.1
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhC--CCChhHHHHHHH-HHHHcCCHHHH
Q 004622 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLD--PTLLQAYILKGC-AFSALGRKEEA 122 (741)
Q Consensus 47 ~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~-~~~~~g~~~~A 122 (741)
-.-|+|+.+.++|++++... .....|+..+.+|...|.-..|+...++.+... |+++..++.... |+...|..+++
T Consensus 334 ~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 46789999999999999877 778889999999999999999999999999998 888777666555 45667999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCC
Q 004622 123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS 202 (741)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (741)
+..-.+++..--...... ....+...+.--+. .......
T Consensus 414 ldYA~kai~~~~~~~~~l---~~~~~l~lGi~y~~------------------~A~~a~~-------------------- 452 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHL---KPRGYLFLGIAYGF------------------QARQANL-------------------- 452 (799)
T ss_pred HHHHHHHHHHhhhhhhhh---hhhHHHHHHHHHHh------------------HhhcCCC--------------------
Confidence 999999877442211100 00001111000000 0000000
Q ss_pred CCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccc
Q 004622 203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD 282 (741)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (741)
T Consensus 453 -------------------------------------------------------------------------------- 452 (799)
T KOG4162|consen 453 -------------------------------------------------------------------------------- 452 (799)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHH
Q 004622 283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA 362 (741)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~ 362 (741)
...+.....++++.++++++.+|+|+.+.+.++.-|..+++.+.|...
T Consensus 453 -------------------------------~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~- 500 (799)
T KOG4162|consen 453 -------------------------------KSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDY- 500 (799)
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHH-
Confidence 001112345699999999999999999999999999999999999994
Q ss_pred HHhHHHHHHHhhc-cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622 363 KRNKKFCVTRISK-SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 441 (741)
...... ....++..|..++.++-..+++.+|+.+.+.++...|+|.........+-...++.++|+..+...
T Consensus 501 -------~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 501 -------AREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred -------HHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH
Confidence 444444 477788999999999999999999999999999999998888888888888889999999998887
Q ss_pred HHhCCCcHHH---------HHHHHHHHHHcCChHHHHHHHHHHHhh---------------------CCCC-----HHHH
Q 004622 442 IQSNPSAGEA---------WKRRGQARAALGESVEAIQDLSKALEF---------------------EPNS-----ADIL 486 (741)
Q Consensus 442 l~~~~~~~~~---------~~~la~~~~~~~~~~~A~~~~~~al~~---------------------~p~~-----~~~~ 486 (741)
+..-.....+ ....+......++..+|+....++... .|.. ...|
T Consensus 574 L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 574 LALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred HHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHH
Confidence 7654322222 222223333344555555555554332 1111 2356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Q 004622 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (741)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 566 (741)
...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|.+.|..++.++|+++.+...+|.++...|+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 67788888888888888899999888888888999999999999999999999999999999999999999999999988
Q ss_pred hHHHHH--HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 567 SEKALE--CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 567 ~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
..-|.. .+..+++++|.++++|+.+|.++...|+.++|.++|+-++++++++
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 877777 8888999999999999999999999999999999999998888776
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=2.6e-19 Score=196.19 Aligned_cols=261 Identities=13% Similarity=0.004 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------cHHHHHHHHHHHHHhCCCcHH
Q 004622 383 FRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQR---------ELEAAISDFTEAIQSNPSAGE 450 (741)
Q Consensus 383 ~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~~~~~~~ 450 (741)
.++..|..++.. +++++|+.+|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 355566655443 45789999999999999999999999998877443 488999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004622 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (741)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 530 (741)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777777778889
Q ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHH
Q 004622 531 GEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (741)
Q Consensus 531 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (741)
|++++|+..+++++... |+++..+..+|.++...|++++|...+.++....|....++..++..|...|+ .|...++
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~ 497 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR 497 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence 99999999999999875 77888999999999999999999999999988888888888999999988884 7777777
Q ss_pred HhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 610 SGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 610 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
+.++..-.. ... ......++.-.|+.+.+....+..
T Consensus 498 ~ll~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 533 (553)
T PRK12370 498 EFLESEQRI-DNN-PGLLPLVLVAHGEAIAEKMWNKFK 533 (553)
T ss_pred HHHHHhhHh-hcC-chHHHHHHHHHhhhHHHHHHHHhh
Confidence 765543222 111 445788888888888887543333
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=4.6e-17 Score=164.93 Aligned_cols=366 Identities=14% Similarity=0.040 Sum_probs=279.1
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHH------------------------
Q 004622 314 DSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC------------------------ 369 (741)
Q Consensus 314 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~------------------------ 369 (741)
.+.+..-|+.|...+.++-+.-|.+...+..-+.+--..|+.+...+.........
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 34445678999999999999999999998888888777776554443322221100
Q ss_pred ---HHH-------hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622 370 ---VTR-------ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (741)
Q Consensus 370 ---~~~-------~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 439 (741)
... +.-.....-..|+.-+..+...+.++-|+..|..+++.+|.....|...+..-..-|..++-..+++
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 000 0112223334666777778888888889999999999999888888888888888888888888899
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (741)
Q Consensus 440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 519 (741)
+++...|.....|...+..+...|+...|...+..+++.+|++.++|+.-..+.....+++.|..+|.++....|. ..+
T Consensus 575 kav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv 653 (913)
T KOG0495|consen 575 KAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERV 653 (913)
T ss_pred HHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chh
Confidence 9999889888888888888888899999999999999999988888888888888888888888888887775543 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC
Q 004622 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (741)
Q Consensus 520 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 599 (741)
|+.-+.+...+++.++|+..++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 66667777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHH-HHHhh-------------------------------
Q 004622 600 QHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLL-CTRLL------------------------------- 647 (741)
Q Consensus 600 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~------------------------------- 647 (741)
+.-.|...++++.-.+|.+ ..+|.....+-.+.|+.+.|.. .-+.+
T Consensus 734 ~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred chhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 8888888888888888877 3336666777777777777762 22222
Q ss_pred -ccCCcccchhhHHHHhcCCCchhHhhhHHHHHhhh
Q 004622 648 -KSTVSFAGLTLMEILIPSSRNIGAKDCIPRMYVKR 682 (741)
Q Consensus 648 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (741)
...+|.+....+..+....+++.|..-|+++.+..
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 22344567778888888888999999998887765
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=1e-18 Score=184.59 Aligned_cols=299 Identities=10% Similarity=-0.019 Sum_probs=174.4
Q ss_pred HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH-HHH
Q 004622 306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV-DFR 384 (741)
Q Consensus 306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~ 384 (741)
......|...+..|+++.|.+.+.++.+..|.....+...+.+....|+++.+.. .+.......|... .+.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~--------~l~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQ--------HLEEAAELAGNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHhCCcCchHHH
Confidence 3344556677777777777777777777666666666666666666666666666 4444333334432 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHH
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK----RRGQARA 460 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----~la~~~~ 460 (741)
...+.++...|+++.|...++++++..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-..
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666666666666666666666666666666666655333322211 1111112
Q ss_pred HcCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHH
Q 004622 461 ALGESVEAIQDLSKALEFEP----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY--TYLGLALSSIGEYK 534 (741)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~ 534 (741)
..+..+++...+.++....| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 22333334445555555555 3566666666666666666666666666666666665321 11222223345566
Q ss_pred HHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622 535 KAEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQ--QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (741)
Q Consensus 535 ~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (741)
.++..++++++..|+++ .....+|+++.+.|++++|.++|+ .+++..|+... +..+|.++...|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666666666666 556666666666666666666666 35555555433 44666666666666666666666
Q ss_pred hhh
Q 004622 611 GSR 613 (741)
Q Consensus 611 al~ 613 (741)
++.
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 543
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.6e-18 Score=164.89 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=258.3
Q ss_pred chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622 304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383 (741)
Q Consensus 304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (741)
.......+|..++..|++.+|+..|+++.-++|..+......+.++...|+++.-.+ ....+.........-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~--------L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA--------LMDYLFAKVKYTASH 302 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH--------HHHHHHhhhhcchhh
Confidence 345677889999999999999999999999999999999999999999999988776 444455555566777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
|+--+...+..+++..|+.+-+++++.+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.|..+..+|...|
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 464 ESVEAIQDLSKALEFEPNSADILHERG-IVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 541 (741)
++.+|.-.-+.+++..|.++..+..+| .++. .-.--++|.+.+++++++.|....+...++.++...|.+..++..++
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999999999999999999999999987 4443 33445889999999999999999999999999999999999999999
Q ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC
Q 004622 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (741)
Q Consensus 542 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 599 (741)
+.+...|+ ...+..||.++...+.+++|+.+|..++.++|++..+...+-.+-....
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 99999887 5688899999999999999999999999999998877766655444333
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-19 Score=173.52 Aligned_cols=288 Identities=21% Similarity=0.247 Sum_probs=215.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 004622 36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (741)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 114 (741)
+...+.+++.++++.+|..|+..|+.||... .++..|.+||.+++..|+|++|..+.+..++++|+..+++.+.+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 3445578888999999999999999999998 678889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCC
Q 004622 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (741)
Q Consensus 115 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 194 (741)
.+++.-+|...|+. .. +.... .
T Consensus 129 a~~~~i~A~~~~~~--------~~-~~~~a---------n---------------------------------------- 150 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKS--------KQ-AYKAA---------N---------------------------------------- 150 (486)
T ss_pred hhHHHHHHHHHhhh--------hh-hhHHh---------h----------------------------------------
Confidence 99999999988872 11 00000 0
Q ss_pred CcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccc
Q 004622 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (741)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (741)
T Consensus 151 -------------------------------------------------------------------------------- 150 (486)
T KOG0550|consen 151 -------------------------------------------------------------------------------- 150 (486)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc
Q 004622 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (741)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 354 (741)
|+..+++.+..+...
T Consensus 151 -------------------------------------------------al~~~~~~~~s~s~~---------------- 165 (486)
T KOG0550|consen 151 -------------------------------------------------ALPTLEKLAPSHSRE---------------- 165 (486)
T ss_pred -------------------------------------------------hhhhhhcccccccCC----------------
Confidence 000000000000000
Q ss_pred HHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 004622 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434 (741)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 434 (741)
|....+.+..+.++...|++++|+..--.+++.++.+.++++..|.+++..++.+.|
T Consensus 166 -----------------------pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 166 -----------------------PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred -----------------------chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence 111122224455556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCcH------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCC
Q 004622 435 ISDFTEAIQSNPSAG------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKD 498 (741)
Q Consensus 435 ~~~~~~~l~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~ 498 (741)
+..|++++.++|+.. ..+...|+-.+..|++..|.+.|..+|.++|++ +..|.+++.+..++|+
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence 666666666666543 346667777888888889999999999888876 4567888888888999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 004622 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (741)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 549 (741)
..+|+..++.++.++|....++...|.|+..+++|++|++.|+++++...+
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999888889999999999999999999999998887655
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.86 E-value=2.3e-17 Score=167.70 Aligned_cols=354 Identities=14% Similarity=0.056 Sum_probs=212.3
Q ss_pred hhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHH
Q 004622 311 LSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390 (741)
Q Consensus 311 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 390 (741)
+|..+-..++|++|+++|..|+..+|+|...+..++.+-.++++++.... .........|..-..|+..+..
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~--------tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE--------TRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHhhhhhHHHHHHHHHH
Confidence 34444455677888888888888888888888888877777777777666 5555566667777777888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 004622 391 QVNEGKYASAISIFDQILKED---PMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (741)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 462 (741)
+.-.|++..|....+...+.. |.. .+.......+....|.+++|++.+..--..--+........|.++...
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHH
Confidence 888888888877777666544 221 244455566666777777777666554333333344455667777777
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHH-----------------------
Q 004622 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACVKLDKENKS----------------------- 518 (741)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~----------------------- 518 (741)
+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|....
T Consensus 233 ~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred hhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 88888888888888888877776666655554222223333 333333222222100
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hC------------cccH--HHHHHHHHHHHHcCChH
Q 004622 519 ---------AYTYLGLALSSIGEYKKAEEAHLKAIQ-------LD------------RNFL--EAWGHLTQFYQDLANSE 568 (741)
Q Consensus 519 ---------~~~~la~~~~~~~~~~~A~~~~~~al~-------~~------------~~~~--~~~~~la~~~~~~~~~~ 568 (741)
+...+-..| .+..+ ...+++.+. -. |..+ ..++.++..+...|+++
T Consensus 313 ~~l~Kg~p~vf~dl~SLy---k~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 313 PLLSKGVPSVFKDLRSLY---KDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHhhcCCCchhhhhHHHH---hchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 000000000 11111 012222111 10 1112 23455677777777777
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhc
Q 004622 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLK 648 (741)
Q Consensus 569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 648 (741)
.|..+++.++...|.-++.+...|.++...|+.++|..++..+.+++..| ..+...-|....+..+.++|.+......
T Consensus 389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD--R~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD--RAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh--HHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777655 3324456667777777777774433322
Q ss_pred cCC-c-----------ccchhhHHHHhcCCCchhHhhhHHHH
Q 004622 649 STV-S-----------FAGLTLMEILIPSSRNIGAKDCIPRM 678 (741)
Q Consensus 649 ~~~-~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (741)
... . +....-|+.|.++|++..|+.-|..+
T Consensus 467 r~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 467 REGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 111 1 12233456777777777776666443
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.85 E-value=8e-19 Score=185.36 Aligned_cols=354 Identities=14% Similarity=0.140 Sum_probs=229.2
Q ss_pred hhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhcccc
Q 004622 82 LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTC 161 (741)
Q Consensus 82 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 161 (741)
+++-+.|+..+-+++++||+..+++-.+|.+|...-+...|.++|.+|.++||.+.. +..++.........++.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdae-aaaa~adtyae~~~we~----- 544 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAE-AAAASADTYAEESTWEE----- 544 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh-hHHHHHHHhhccccHHH-----
Confidence 356788999999999999999999999999999999999999999999999999988 33333222222111100
Q ss_pred ccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCcccccc
Q 004622 162 EYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGL 241 (741)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (741)
++.-+...- .. .+.
T Consensus 545 ------a~~I~l~~~------qk--------------------------------a~a---------------------- 558 (1238)
T KOG1127|consen 545 ------AFEICLRAA------QK--------------------------------APA---------------------- 558 (1238)
T ss_pred ------HHHHHHHHh------hh--------------------------------chH----------------------
Confidence 000000000 00 000
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCCh
Q 004622 242 HINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDS 321 (741)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 321 (741)
......+...|-.+.+.+++
T Consensus 559 ------------------------------------------------------------~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 559 ------------------------------------------------------------FACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred ------------------------------------------------------------HHHHhhhhhccccccCccch
Confidence 00111222345566667777
Q ss_pred hhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHH
Q 004622 322 NTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAI 401 (741)
Q Consensus 322 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 401 (741)
..|+..|+.+++.+|++...+..++.+|.+.|++..|++ .+.++...+|.+.-..+..+......|.|.+|+
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK--------vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK--------VFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH--------hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 777777777777777777777777777777777777777 666666677777777777777777777777777
Q ss_pred HHHHHHHHhCCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHh-------C----------------------
Q 004622 402 SIFDQILKEDPMYP-------EALIGRGTARAFQRELEAAISDFTEAIQS-------N---------------------- 445 (741)
Q Consensus 402 ~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~l~~-------~---------------------- 445 (741)
..+...+....... +++...+..+...|-..+|..++++.++. .
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 77777666443332 23333333333334333444443333221 0
Q ss_pred CC-----------------------------------------cHHHHHHHHHHHHH--------cCChHHHHHHHHHHH
Q 004622 446 PS-----------------------------------------AGEAWKRRGQARAA--------LGESVEAIQDLSKAL 476 (741)
Q Consensus 446 ~~-----------------------------------------~~~~~~~la~~~~~--------~~~~~~A~~~~~~al 476 (741)
|+ ++..|+++|..|+. +.+...|+.++.+++
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 10 11235556655544 123346777777777
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 004622 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (741)
Q Consensus 477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 556 (741)
++..++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++....+++-|...|.++..++|.+...|..
T Consensus 811 ~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 811 SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 7777777777777776 555777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 004622 557 LTQFYQDLANSEKALECLQQ 576 (741)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~ 576 (741)
.+.+....|+.-++...|..
T Consensus 890 ~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHh
Confidence 66666666665555555554
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=6.6e-19 Score=176.89 Aligned_cols=235 Identities=16% Similarity=0.121 Sum_probs=190.4
Q ss_pred HcCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 004622 393 NEGKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468 (741)
Q Consensus 393 ~~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 468 (741)
..+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34577889999999997444 3 3678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (741)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 548 (741)
+..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999743222 2234557889999999988775543
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHH-------HhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622 549 NFLEAWGHLTQFYQDLANSEKALECLQQV-------LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW 621 (741)
Q Consensus 549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 621 (741)
.. .|. .+.++...|+...+ ..++.+ .++.|...++|+.+|.++...|++++|+.+|++++..+|.++++
T Consensus 197 ~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 197 KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 32 222 35555666766443 233333 35566778899999999999999999999999999999877566
Q ss_pred HHHHHHHHHHHh
Q 004622 622 NLTRWRNLCFNA 633 (741)
Q Consensus 622 ~~~~~la~~~~~ 633 (741)
. .+.+..+...
T Consensus 273 ~-~~~~~e~~~~ 283 (296)
T PRK11189 273 H-RYALLELALL 283 (296)
T ss_pred H-HHHHHHHHHH
Confidence 5 5555444443
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=4.6e-18 Score=179.61 Aligned_cols=292 Identities=11% Similarity=-0.014 Sum_probs=134.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCC
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAALGE 464 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~ 464 (741)
..|...+..|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 3444455555555555555555555554444444445555555555555555555555444443 233334555555555
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHHHHH
Q 004622 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKKAEEAH 540 (741)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~ 540 (741)
++.|...++...+..|+++.++..++.++...|++++|.+.+.+..+....++.... .........+..+++...+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 555555555555555555555555555555555555555555555544322222111 1111112223333333444
Q ss_pred HHHHHhCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHH--HHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 541 LKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 541 ~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
.++....| +++..+..++..+...|++++|...++++++..|++.... ..........++.+.+++.++++++.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44444444 2445555555555555555555555555555555443211 11122222234445555555555555
Q ss_pred cCCchHH-HHHHHHHHHHHhCCCHHHHHHHHH--hhccCCc--ccchhhHHHHhcCCCchhHhhhHHHH
Q 004622 615 MMPHLIW-NLTRWRNLCFNAWPFIRRRLLCTR--LLKSTVS--FAGLTLMEILIPSSRNIGAKDCIPRM 678 (741)
Q Consensus 615 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (741)
.|++ +. .+...+|.++.+.|++++|..+++ ......| .....++.++...|+.++|..++++.
T Consensus 329 ~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5554 20 224455555555555555554444 1211111 22334555555555555555554443
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1e-15 Score=149.70 Aligned_cols=439 Identities=13% Similarity=0.050 Sum_probs=288.1
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 004622 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (741)
Q Consensus 47 ~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 125 (741)
-.++++.+|..+|++||..+ .+...|..-+.+-++.++...|...+++++.+-|.--+-++..-..-..+|+...|.+.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46889999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCc
Q 004622 126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR 205 (741)
Q Consensus 126 ~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (741)
|++-+...|+... +...+.--...
T Consensus 164 ferW~~w~P~eqa-W~sfI~fElRy------------------------------------------------------- 187 (677)
T KOG1915|consen 164 FERWMEWEPDEQA-WLSFIKFELRY------------------------------------------------------- 187 (677)
T ss_pred HHHHHcCCCcHHH-HHHHHHHHHHh-------------------------------------------------------
Confidence 9999999998766 44433211111
Q ss_pred ccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCC
Q 004622 206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN 285 (741)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (741)
T Consensus 188 -------------------------------------------------------------------------------- 187 (677)
T KOG1915|consen 188 -------------------------------------------------------------------------------- 187 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHh
Q 004622 286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN 365 (741)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~ 365 (741)
+..+.|..+|++-+-.+|+ +..+...+..-.+.|+..-+......+
T Consensus 188 ---------------------------------keieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 188 ---------------------------------KEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred ---------------------------------hHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1223344444444443322 222333333333334333333322222
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccH---HHHHH----
Q 004622 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQREL---EAAIS---- 436 (741)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~---~~A~~---- 436 (741)
....-. +......+...|..-..+..++.|..+|+-++..-|.+- ..+......--+-|+. ++++.
T Consensus 234 ie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 234 IEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 111110 111122333444444556677777777777777777662 2222222222233432 22322
Q ss_pred -HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHH---HHcCCHHHHHHH
Q 004622 437 -DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD-------ILHERGIVN---FKFKDFNAAVED 505 (741)
Q Consensus 437 -~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~---~~~~~~~~A~~~ 505 (741)
-|+..++.+|.+.++|+..-.+-...|+.+.-.+.|++|+...|.... ++..+-.++ +...+.+.+.+.
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 256667777888888877777777778888888888888877665322 122222222 245677778888
Q ss_pred HHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622 506 LSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (741)
Q Consensus 506 ~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (741)
|+.++++-|.. ...|...|...+++.+...|.+.+-.++-.+|.+ ..+.....+-.++++++.....|++-+...
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88888877754 3566667777777788888888888888877773 344455566667778888888888888888
Q ss_pred cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhH
Q 004622 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLM 659 (741)
Q Consensus 582 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~ 659 (741)
|.+..+|...|.+-..+|+.+.|...|+-|+....-+.+..+|-.....-...|.++.|...|+.+....+ .++...+
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 88888888888888888888888888888777654444555555556666777888888766655433322 3444444
Q ss_pred HH
Q 004622 660 EI 661 (741)
Q Consensus 660 ~~ 661 (741)
..
T Consensus 548 ~f 549 (677)
T KOG1915|consen 548 KF 549 (677)
T ss_pred HH
Confidence 43
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=2.1e-18 Score=189.09 Aligned_cols=245 Identities=16% Similarity=0.064 Sum_probs=208.1
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 004622 369 CVTRISKSKSISVDFRLSRGIAQVN---------EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (741)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 439 (741)
.+......+|.+..++..+|.++.. .+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 283 ~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~ 362 (553)
T PRK12370 283 LLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFK 362 (553)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444555555555555555555442 3558999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 004622 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKS 518 (741)
Q Consensus 440 ~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 518 (741)
++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++.
T Consensus 363 ~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~ 442 (553)
T PRK12370 363 QANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI 442 (553)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence 99999999999999999999999999999999999999999998887777878888999999999999999875 78889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHC
Q 004622 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (741)
Q Consensus 519 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 598 (741)
++..+|.++...|++++|...+.++....|....++..++..|...|+ +|...+++.++.....+.-....+.++.-.
T Consensus 443 ~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 443 LLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 999999999999999999999999999999989999999999998884 787777776664433332333488888889
Q ss_pred CChHHHHHHHHHhhhhcC
Q 004622 599 GQHKKAIKDLSSGSRTMM 616 (741)
Q Consensus 599 g~~~~A~~~~~~al~~~~ 616 (741)
|+.+.+..+ +++.+.+.
T Consensus 521 g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 521 GEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hhhHHHHHH-HHhhccch
Confidence 998888877 77766543
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=181.36 Aligned_cols=258 Identities=18% Similarity=0.190 Sum_probs=217.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
-+..|..++..|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 004622 464 ESVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYK 534 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~ 534 (741)
.-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++.+...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999999887643211110 00001111123445567777777788 78999999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
+|+.+|+.++...|++...|+.||..+..-.+.++|+..|++|+++.|....+++++|..++.+|.|++|.++|-.++.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCc-----h---HHHHHHHHHHHHHhCCCHHHHH
Q 004622 615 MMPH-----L---IWNLTRWRNLCFNAWPFIRRRL 641 (741)
Q Consensus 615 ~~~~-----~---~~~~~~~la~~~~~~g~~~~A~ 641 (741)
.+.. . .+.+|-.|=.++...++.+-+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 6541 0 1223444445555566655443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.84 E-value=8.3e-17 Score=166.92 Aligned_cols=326 Identities=11% Similarity=-0.012 Sum_probs=230.0
Q ss_pred ChhhHHHHHHHhhccC-----CCCchhHHHHHHHHHchhcHHHHHH---HHHHhHHHHHHHhhccCCccHHHHHHHHHHH
Q 004622 320 DSNTNSESYSKSSISD-----NKSSDSTESRSKLSFKWDMLKETSN---EAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391 (741)
Q Consensus 320 ~~~~A~~~~~~a~~~~-----p~~~~~~~~la~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 391 (741)
.+++++.+-.+++... --.+..+..+|.+|..+-.-..-.. ...+..-..+++....+|.++.+.+.++..|
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~ 488 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQY 488 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4445555555555421 1134466666666655432211111 1111111244555566777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 004622 392 VNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 470 (741)
..+++.+.|.+..+++++. ..+++.+|..++.++...+++.+|+.....++...|+|.........+-...++.++|+.
T Consensus 489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence 7777777777777777777 344567777777777777777777777777777777766666666666666777777777
Q ss_pred HHHHHHhhCCCCHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHh--------C-----C--------CC----
Q 004622 471 DLSKALEFEPNSADILHER---------GIVNFKFKDFNAAVEDLSACVKL--------D-----K--------EN---- 516 (741)
Q Consensus 471 ~~~~al~~~p~~~~~~~~l---------a~~~~~~~~~~~A~~~~~~al~~--------~-----p--------~~---- 516 (741)
.+...+.+......+...+ +......++..+|++.++++... . | ..
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 7777776654332222222 22233334555555555554332 0 1 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHH
Q 004622 517 -KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (741)
Q Consensus 517 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 595 (741)
...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+.++|...|..++.++|+++.+...+|.++
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 1346677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHH--HHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 596 HGLGQHKKAIK--DLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 596 ~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
...|+..-|.. .+..+++++|.+ .++ |+.+|.++...|+.++|..||...
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n-~ea-W~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLN-HEA-WYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCC-HHH-HHHHHHHHHHccchHHHHHHHHHH
Confidence 99999888888 999999999998 677 999999999999999999988774
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.2e-19 Score=168.36 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=240.3
Q ss_pred CCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622 301 TNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS 380 (741)
Q Consensus 301 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (741)
...+++..+..|+.+++..+|.+|+..|..++...|++...+.+.+.++...|+++++.. .........+..
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~--------dar~~~r~kd~~ 116 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALG--------DARQSVRLKDGF 116 (486)
T ss_pred HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhccc--------chhhheecCCCc
Confidence 345677888999999999999999999999999999999999999999999999999988 444445556666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQIL------------KED------PMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 442 (741)
.......+.++...++..+|.+.++..- ..- |....+....+.|+...|++++|...--..+
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 6677788888888888888776665221 011 2234566778899999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD------------ILHERGIVNFKFKDFNAAVEDLSACV 510 (741)
Q Consensus 443 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~~~~~~A~~~~~~al 510 (741)
++++.+.++++..|.+++..++.+.|+..|++++.++|++.. .+..-|.-.++.|++.+|.++|..++
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 999999999999999999999999999999999999998643 46677888999999999999999999
Q ss_pred HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622 511 KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (741)
Q Consensus 511 ~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 583 (741)
.++|++. ..|.+++.+..++|+..+|+...+.++.++|....++...|.++...++|++|++.|+++++...+
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999874 568889999999999999999999999999999999999999999999999999999999987655
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=2e-17 Score=173.66 Aligned_cols=288 Identities=12% Similarity=0.019 Sum_probs=220.9
Q ss_pred HHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHH
Q 004622 346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTA 424 (741)
Q Consensus 346 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~ 424 (741)
|......|+++.|.+ .........+...-.+...+......|+++.|..+|.++.+.+|++..+. ...+.+
T Consensus 91 gl~a~~eGd~~~A~k--------~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 91 ALLKLAEGDYQQVEK--------LMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHhCCCHHHHHH--------HHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 334445677777776 33333333223333445556676899999999999999999888875433 445889
Q ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH--------HHHHHHHHc
Q 004622 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKF 496 (741)
Q Consensus 425 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~ 496 (741)
+...|+++.|...++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++.... .+.......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888887765544222 222222233
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 004622 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (741)
Q Consensus 497 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 576 (741)
.+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.+++++.+++
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~ 319 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ 319 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence 34444555555555556778999999999999999999999999999984 4455544444443 44899999999999
Q ss_pred HHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 577 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
.++..|+++..+..+|.++...|++++|.++|+++++..|++ .. +..++.++...|+.++|..+|+.-
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~--~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA--YD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886 44 678999999999999999887753
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=2.5e-17 Score=172.91 Aligned_cols=300 Identities=10% Similarity=-0.000 Sum_probs=242.9
Q ss_pred chHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH-H
Q 004622 304 THDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV-D 382 (741)
Q Consensus 304 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~ 382 (741)
.+......|...+..|+++.|.+...+.-...+.....+...+......|+++.+.. .+.......|... .
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~--------~l~~A~~~~~~~~~~ 154 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQ--------HLERAAELADNDQLP 154 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHhcCCcchHH
Confidence 345556778899999999999988888766543333344444555589999999999 6777667666664 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH--------H
Q 004622 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK--------R 454 (741)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--------~ 454 (741)
.....+..+...|+++.|...++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+.++.... .
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44556999999999999999999999999999999999999999999999999999999887765443222 2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004622 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (741)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 534 (741)
+........+.+...+.++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.+
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~ 311 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPE 311 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChH
Confidence 2222222334455555555555566789999999999999999999999999999994 4455544444443 459999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
+++..+++.++..|+++..+..+|.++...+++++|..+|+++++..|++ ..+..++.++...|+.++|.++|++++.+
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999985 45678999999999999999999999875
Q ss_pred c
Q 004622 615 M 615 (741)
Q Consensus 615 ~ 615 (741)
.
T Consensus 391 ~ 391 (398)
T PRK10747 391 T 391 (398)
T ss_pred h
Confidence 4
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=4.4e-18 Score=151.91 Aligned_cols=207 Identities=22% Similarity=0.213 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 460 (741)
..+.+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|-+.|+++++++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 35667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622 461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (741)
Q Consensus 461 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 538 (741)
.+|++++|...|++++.. .|..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888764 355677888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH
Q 004622 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (741)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 587 (741)
++++.....+-....+.....+-...|+-+.+-++=.+.....|...+.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8888777777777777777777777788777777777777777766543
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=8.2e-18 Score=168.97 Aligned_cols=219 Identities=18% Similarity=0.105 Sum_probs=178.8
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (741)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 456 (741)
.+..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 536 (741)
.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+.+.....+..... .+.+....|+...+
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~lg~~~~~ 215 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKEQWG---WNIVEFYLGKISEE 215 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCccccH---HHHHHHHccCCCHH
Confidence 99999999999999999999999998743222 234456789999999998877654332222 35555666665443
Q ss_pred --HHHHH----HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHCC
Q 004622 537 --EEAHL----KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLG 599 (741)
Q Consensus 537 --~~~~~----~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 599 (741)
+..+. ...+..|..+.+|+++|.++...|++++|+.+|++++..+| +..+..+.+..+....+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 32222 22355677788999999999999999999999999999997 66666666655554433
No 67
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.82 E-value=2e-16 Score=167.52 Aligned_cols=184 Identities=18% Similarity=0.100 Sum_probs=163.3
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (741)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 541 (741)
..+...|+..+-++++++|....++..+|.+|...-+...|.++|.++.++++.+..+.-..+..|....+++.|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34578889999999999999999999999999988899999999999999999999999999999999999999999877
Q ss_pred HHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch
Q 004622 542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL 619 (741)
Q Consensus 542 ~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 619 (741)
.+-+..|.. ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s- 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS- 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-
Confidence 777766654 34667789999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 620 IWNLTRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 620 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
+...+..+.+....|.|.+|+..+..+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444788899999999999999666554
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=1e-17 Score=164.24 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=136.7
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (741)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 458 (741)
.....++.+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 33566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622 459 RAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (741)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 536 (741)
+...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|.+..++..+|.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776643 334455666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (741)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (741)
+.++++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66666666665555566666666666666666666655555443
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=8e-18 Score=150.23 Aligned_cols=204 Identities=21% Similarity=0.186 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004622 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (741)
Q Consensus 415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (741)
..+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++++.|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Q 004622 495 KFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 572 (741)
.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++.+|+++.....++..+...|+|..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999999874 445568888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 573 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
++++.....+-..+.+.....+-...|+-+.|-++=.+.....|..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9988888777777778777888888899888888877777777876
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=7.7e-19 Score=163.42 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=242.1
Q ss_pred hhHHHhcCChhhHHHHHHHhhccC---CC-------CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH
Q 004622 312 SSDSASLNDSNTNSESYSKSSISD---NK-------SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV 381 (741)
Q Consensus 312 g~~~~~~~~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 381 (741)
-..+|..+|...|-......++.+ |. +......+++||.+.|.+.+|.+. +...... ...+
T Consensus 186 ey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekq--------lqssL~q-~~~~ 256 (478)
T KOG1129|consen 186 EYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQ--------LQSSLTQ-FPHP 256 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHH--------HHHHhhc-CCch
Confidence 446777888888776555554432 11 334567899999999999999984 4333333 3457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 461 (741)
+.+..++.+|....+...|+..|.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|+.
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY 336 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY 336 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHH
Q 004622 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLGLALSSIGEYKKAEE 538 (741)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~ 538 (741)
.++++-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++....+ -.++|+++|.+....|++.-|..
T Consensus 337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 999999999999999999999999999999999999999999999999987442 35899999999999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (741)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 594 (741)
+|+-++..++++..++++||.+-.+.|+.++|..++..+-...|+..+..++++.+
T Consensus 417 cfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 417 CFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999999999999999999999999999999887777766544
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.2e-17 Score=163.81 Aligned_cols=201 Identities=18% Similarity=0.223 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004622 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (741)
Q Consensus 415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (741)
+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 57788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Q 004622 495 KFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 572 (741)
..|++++|+..+++++... +.....+..+|.++...|++++|...+.+++..+|+++..+..+|.++...|++++|+.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888743 44566777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 573 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (741)
.+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 8888888777777777778888888888888887777665543
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=2.6e-16 Score=146.94 Aligned_cols=301 Identities=18% Similarity=0.138 Sum_probs=252.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHH
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQAR 459 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~ 459 (741)
+..|..+.-..+.++|++.|-.+++.+|...++...+|..+...|..+.|+..-+..+. .|+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999887765 4443 34788999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHH
Q 004622 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYK 534 (741)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~ 534 (741)
+..|-++.|...|.........-..++..+..+|....+|++|++.-++..++.+... ..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999998887666678999999999999999999999999999887763 55777888899999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGSR 613 (741)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (741)
.|+..+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+. +.+...+..+|..+|+.++....+.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 67888999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCHHHHH-HHHHhhccCCc-ccchhhHHHHhcC---CCchhHhhhHHHHHhhhhhccch
Q 004622 614 TMMPHLIWNLTRWRNLCFNAWPFIRRRL-LCTRLLKSTVS-FAGLTLMEILIPS---SRNIGAKDCIPRMYVKRFTDSLP 688 (741)
Q Consensus 614 ~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~ 688 (741)
..+.. .. ...++..-....-.+.|. ...+.+...+. ...+.|....... |+..+.+..+..+...+++...+
T Consensus 278 ~~~g~--~~-~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 278 TNTGA--DA-ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred ccCCc--cH-HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 88775 33 456666665555566666 55566665555 3455566555543 44566666677777777665554
Q ss_pred h
Q 004622 689 C 689 (741)
Q Consensus 689 ~ 689 (741)
+
T Consensus 355 Y 355 (389)
T COG2956 355 Y 355 (389)
T ss_pred c
Confidence 4
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=3.8e-18 Score=171.72 Aligned_cols=257 Identities=16% Similarity=0.153 Sum_probs=220.0
Q ss_pred HHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004622 342 TESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR 421 (741)
Q Consensus 342 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 421 (741)
-+..|..+++.|+..+|.- +++.....+|..+++|..+|.+....++-..|+..++++++++|++.+++..|
T Consensus 288 Pf~eG~~lm~nG~L~~A~L--------afEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaL 359 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAAL--------AFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMAL 359 (579)
T ss_pred hHHHHHHHHhcCCchHHHH--------HHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4567888899999988888 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Q 004622 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKR-------RGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIV 492 (741)
Q Consensus 422 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~ 492 (741)
|.+|...|.-.+|+.++.+.+...|.....-.. ..........+..-.+.|..+....| .++++...||.+
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 999999999999999999999887654321100 00001111124455667777777777 689999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Q 004622 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (741)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 572 (741)
|.-.|+|++|+.+|+.++...|++...|..+|-.+....+.++|+..|++|+++.|....++++||..+..+|.|++|++
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCccc----------HHHHHHHHHHHHHCCChHHHHH
Q 004622 573 CLQQVLYIDKRF----------SKAYHLRGLLLHGLGQHKKAIK 606 (741)
Q Consensus 573 ~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~ 606 (741)
+|-.++.+.+.. ..+|..|-.++..+++.+-+..
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 999999886541 2466666677777777765443
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.79 E-value=2.6e-15 Score=152.95 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
.++-+.|+.++|++.+....+.+.-. .-...+...|.....+|+-++|...++.++..||.+.-.|-.+|.++....+|
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 45667899999999999999999965 44566778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 120 EEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
++|+++|+.||.++|+|.. ++.-++.++..+
T Consensus 92 ~eaiKcy~nAl~~~~dN~q-ilrDlslLQ~Qm 122 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQ-ILRDLSLLQIQM 122 (700)
T ss_pred HHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHH
Confidence 9999999999999999999 777776666665
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=9e-16 Score=144.67 Aligned_cols=452 Identities=13% Similarity=-0.012 Sum_probs=309.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-CCh-hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 42 ~~~~~~~~g~~~~Ai~~~~~al~~~-~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
++-.++.+.||..||..++-.+..+ ... ..-.=.|.|++++|+|++|+..+.-+...+.-..+....++++++-+|.|
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 3667889999999999999999877 222 33445799999999999999999999987777788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (741)
.+|...-.+ .|+++.-.+............+ ....+..
T Consensus 108 ~eA~~~~~k----a~k~pL~~RLlfhlahklndEk-----------------------------~~~~fh~--------- 145 (557)
T KOG3785|consen 108 IEAKSIAEK----APKTPLCIRLLFHLAHKLNDEK-----------------------------RILTFHS--------- 145 (557)
T ss_pred HHHHHHHhh----CCCChHHHHHHHHHHHHhCcHH-----------------------------HHHHHHH---------
Confidence 999887776 4666662222221111111111 0000000
Q ss_pred cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (741)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (741)
.
T Consensus 146 -----------------------~-------------------------------------------------------- 146 (557)
T KOG3785|consen 146 -----------------------S-------------------------------------------------------- 146 (557)
T ss_pred -----------------------H--------------------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (741)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~ 359 (741)
-.+..+....++...|..-.|.+||..|.+++.-+|.-+.....++.||.++.-++-+.
T Consensus 147 ---------------------LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 147 ---------------------LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred ---------------------HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence 00111233456777888888999999999999988887777788888888887777666
Q ss_pred HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 004622 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDF 438 (741)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~ 438 (741)
+ .+.......|.+.-+...++...++.=+-..|.......... +...+.+-...-.-+.--.+-+.|+..+
T Consensus 206 e--------vl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 206 E--------VLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred H--------HHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhc
Confidence 6 556666677777777777777776654444444444443332 2222222221111111112335566666
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCC-
Q 004622 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC---VKLDK- 514 (741)
Q Consensus 439 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~p- 514 (741)
-..+..- |++..+++..|..+++..+|+...+ .++|..|.-+...|.+....|+--...+.++-+ +.+-.
T Consensus 278 P~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 278 PSLMKHI---PEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred hHHHhhC---hHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 5555544 4678888889999999999988775 478988988999999988888765554444433 33221
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc-ccHHHH
Q 004622 515 -----ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAY 588 (741)
Q Consensus 515 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 588 (741)
+.......++.+++-..++++.+.++...-...-++....+++++++...|+|.+|.+.|-+.-...- +.....
T Consensus 352 Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~ 431 (557)
T KOG3785|consen 352 SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYK 431 (557)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHH
Confidence 22344566788888888999999998888888888888889999999999999999998877654442 234445
Q ss_pred HHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc
Q 004622 589 HLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS 652 (741)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 652 (741)
..+|.+|...++++.|...+-+.- .|.+ .-.++..++......+.+--|.+.+..+...+|
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~--t~~e-~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTN--TPSE-RFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcC--Cchh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 678999999999999887765431 2333 445466677777778887777766666655555
No 76
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=9e-17 Score=160.38 Aligned_cols=209 Identities=16% Similarity=0.166 Sum_probs=189.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh--H
Q 004622 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES--V 466 (741)
Q Consensus 390 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~--~ 466 (741)
++...+.+++|+..+.+++..+|.+..+|..++.++..+| ++++++..+.++++.+|++..+|...+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3556789999999999999999999999999999999998 689999999999999999999999999999888874 7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHH
Q 004622 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY----KKAEEA 539 (741)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~ 539 (741)
+++..+.++++.+|++..+|..++.++...|+++++++++.++++.+|.+..+|+.++.+.... |.+ ++++.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999988776 333 578888
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHC
Q 004622 540 HLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (741)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 598 (741)
..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.+|...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 889999999999999999999987 45667899999999998999999999999999863
No 77
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.5e-18 Score=161.73 Aligned_cols=119 Identities=29% Similarity=0.390 Sum_probs=111.7
Q ss_pred HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004622 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110 (741)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 110 (741)
...-+..-|.+++++++.++|++|++.|++||+++ .|+.+|+|||.+|.++|.|+.|+++|+++|.+||++.++|.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 34556677899999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 111 CAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
.+|..+|++++|+..|+++|.++|+|.. ++..|..+....
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~-~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNES-YKSNLKIAEQKL 196 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHH-HHHHHHHHHHHh
Confidence 9999999999999999999999999998 888887776666
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.2e-15 Score=142.64 Aligned_cols=264 Identities=16% Similarity=0.093 Sum_probs=165.8
Q ss_pred hhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccC----CccHHHHHHH
Q 004622 312 SSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSK----SISVDFRLSR 387 (741)
Q Consensus 312 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 387 (741)
|..+.-.++-++|+..|-.+++.+|...++...+|.++.+.|..+.|+. .-..+.... .....+...+
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIR--------iHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIR--------IHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHH--------HHHHHhcCCCCchHHHHHHHHHH
Confidence 5555556777777777777777777777777777777777777777766 222222211 1223356666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc
Q 004622 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARAAL 462 (741)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~ 462 (741)
|.-|+..|-++.|...|....+...--..++-.+..+|....+|++|++..++..++.+.. ...+..+|..+...
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 7777777777777777766665444445666666777777777777777777666665543 23455566666666
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHL 541 (741)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~ 541 (741)
.+.+.|+..+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+|... .+...+..+|..+|+.++.+..+.
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666653 455556666666666666666666
Q ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (741)
Q Consensus 542 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 584 (741)
++.+..++ +.+-..++..-....-.+.|..++.+-+...|+.
T Consensus 274 ~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 274 RAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 66666555 3334444444444455566666666666666653
No 79
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=9.8e-17 Score=160.10 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=195.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 004622 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLS 473 (741)
Q Consensus 395 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~ 473 (741)
++|.+|..+|+.++. ..+++++|+..+.++++++|.+..+|...+.++...| ++++++..+.
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 566666666666554 4567889999999999999999999999999999998 6899999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622 474 KALEFEPNSADILHERGIVNFKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (741)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 551 (741)
++++.+|++..+|...+.++...|+. ++++.++.++++.+|++..+|...+.++...|++++++.++.++++.+|.+.
T Consensus 97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 99999999999999999999999874 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc---CCh----HHHHHHHHHHHhhCcccHHHHHHHHHHHHH----CCChHHHHHHHHHhhhhcCCchH
Q 004622 552 EAWGHLTQFYQDL---ANS----EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGSRTMMPHLI 620 (741)
Q Consensus 552 ~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 620 (741)
.+|+..+.+.... |.+ ++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|.+ .
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~ 255 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-V 255 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-H
Confidence 9999999998776 333 478889999999999999999999999988 456678999999999988887 5
Q ss_pred HHHHHHHHHHHHh
Q 004622 621 WNLTRWRNLCFNA 633 (741)
Q Consensus 621 ~~~~~~la~~~~~ 633 (741)
.+ +..++.+|..
T Consensus 256 ~a-l~~l~d~~~~ 267 (320)
T PLN02789 256 FA-LSDLLDLLCE 267 (320)
T ss_pred HH-HHHHHHHHHh
Confidence 55 7888888875
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.2e-14 Score=142.73 Aligned_cols=424 Identities=12% Similarity=0.061 Sum_probs=281.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
..++++..+|+|++|++...+.+.+. .+..++..--.|.++++.|++|+...++-..+.-.+. ..|..+.|++++|+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccH
Confidence 56888999999999999999999988 5566677777899999999999955444333322222 127899999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccc
Q 004622 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (741)
|+|+..++. +++.+..
T Consensus 96 Dealk~~~~---~~~~~~~------------------------------------------------------------- 111 (652)
T KOG2376|consen 96 DEALKTLKG---LDRLDDK------------------------------------------------------------- 111 (652)
T ss_pred HHHHHHHhc---ccccchH-------------------------------------------------------------
Confidence 999988883 2332221
Q ss_pred cCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCC
Q 004622 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (741)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (741)
T Consensus 112 -------------------------------------------------------------------------------- 111 (652)
T KOG2376|consen 112 -------------------------------------------------------------------------------- 111 (652)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHH
Q 004622 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (741)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~ 359 (741)
.....+..+|+.++|++|+.+|+..++.+.++.+......... .. .+.
T Consensus 112 ---------------------------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a-~~----a~l 159 (652)
T KOG2376|consen 112 ---------------------------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA-VA----AAL 159 (652)
T ss_pred ---------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HH----Hhh
Confidence 1112366789999999999999999987766554322111110 00 000
Q ss_pred HHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC-------HHHHHHHHHH
Q 004622 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED--------PMY-------PEALIGRGTA 424 (741)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~~~~~la~~ 424 (741)
. .+ ...........+.+.+|+.|.++...|+|.+|++.+++++.+. .+. ..+...++.+
T Consensus 160 ~-----~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 160 Q-----VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred h-----HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0 00 1222233334477899999999999999999999999995431 111 2456789999
Q ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHH-------------------------------------------------HHHH
Q 004622 425 RAFQRELEAAISDFTEAIQSNPSAGEA-------------------------------------------------WKRR 455 (741)
Q Consensus 425 ~~~~~~~~~A~~~~~~~l~~~~~~~~~-------------------------------------------------~~~l 455 (741)
+..+|+.++|...|...++.+|.+... +.+.
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887754321 1112
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHH
Q 004622 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYK 534 (741)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~ 534 (741)
+.+.+..+.-+.+.+.....-...|..............+...+.+|..++....+.+|.. ..+...++.+.+.+|+++
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 2222222222222222222222222222222222333333347888999999999999988 577888899999999999
Q ss_pred HHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CcccHHHHHHHHHHHHHCCC
Q 004622 535 KAEEAHLKAIQLD-------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHGLGQ 600 (741)
Q Consensus 535 ~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~ 600 (741)
.|+..+...+... ...|.+-..+-..+...++...|...+.+++.- .+.....+...+.+..+.|+
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 9999998433211 122444455556677777766676666666653 22334456677888888899
Q ss_pred hHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccC
Q 004622 601 HKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKST 650 (741)
Q Consensus 601 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 650 (741)
-++|...+++.++.+|++ ... +..+..+|... +.+.|..+-+.+.+.
T Consensus 474 ~~ea~s~leel~k~n~~d-~~~-l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 474 EEEASSLLEELVKFNPND-TDL-LVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred hHHHHHHHHHHHHhCCch-HHH-HHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 999999999999999998 444 55665555544 577777666665443
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=6.5e-16 Score=160.58 Aligned_cols=240 Identities=18% Similarity=0.155 Sum_probs=124.4
Q ss_pred hhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (741)
Q Consensus 373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 444 (741)
.....|....+...+|..|...|+|+.|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34445555555555666666666666666666666665 3332333334566666666666666666666543
Q ss_pred --------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004622 445 --------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSA 508 (741)
Q Consensus 445 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (741)
+|.-..++.+||.+|...|++++|..++++++++... -...+..++.++..++++++|..++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 2222344555666666666666666666655554211 123344555555555555555555555
Q ss_pred HHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCChHHHHH
Q 004622 509 CVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALE 572 (741)
Q Consensus 509 al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~ 572 (741)
++++. |.-...+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|..
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 55431 1112344555555555555555555555555443 1112344455555555555555555
Q ss_pred HHHHHHhh-------CcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 573 CLQQVLYI-------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 573 ~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
.|.++..+ .|+....+.+||.+|..+|++++|+++.++++
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55555443 12223345555555555555555555555544
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=6.1e-15 Score=153.39 Aligned_cols=237 Identities=18% Similarity=0.149 Sum_probs=183.1
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 004622 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--- 479 (741)
Q Consensus 411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 479 (741)
+|.-..+...++..|...|++++|+..++.+++. .|.-......+|.+|...+++.+|+..|++++.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555667777999999999999999999999887 44444556668899999999999999999998763
Q ss_pred --CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 480 --PNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (741)
Q Consensus 480 --p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 546 (741)
+++ ..++.+||.+|...|++++|..++++++++. |.-...+..++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 333 4578889999999999999999999888762 222356777888888899999999999888876
Q ss_pred C--------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622 547 D--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (741)
Q Consensus 547 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (741)
. +.-+..+.++|.+|..+|++++|.+.|++++++. +.....+..+|..+.+.+++.+|.+.|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3 2235678889999999999999999999998764 22345677888888888998888888888
Q ss_pred hhhhc----CCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 611 GSRTM----MPH-LIWNLTRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 611 al~~~----~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
+..+. |++ .....+.+|+.+|..+|+++.|+++...+
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 86543 322 13344888888999999999888765554
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.6e-13 Score=134.24 Aligned_cols=417 Identities=14% Similarity=0.110 Sum_probs=266.3
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHH
Q 004622 14 NKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93 (741)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 93 (741)
.++.++....+.++.+.+....++.+++.. +++.+.|+.|+..-+.-.....+....+..|.|.++++..++|+..++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvVa--lIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVA--LIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhh--hhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 456677777888888866678888888776 899999999984433322222233444799999999999999999998
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhh
Q 004622 94 KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLT 173 (741)
Q Consensus 94 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (741)
..++.........|++++.+|+|++|.+.|+..++-+-++.+ ............... +
T Consensus 104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d-~~~r~nl~a~~a~l~-~----------------- 161 (652)
T KOG2376|consen 104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD-EERRANLLAVAAALQ-V----------------- 161 (652)
T ss_pred ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHhhh-H-----------------
Confidence 567777789999999999999999999999998877766555 111111110000000 0
Q ss_pred hhccccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCccccccccc
Q 004622 174 VSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN 253 (741)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (741)
T Consensus 162 -------------------------------------------------------------------------------- 161 (652)
T KOG2376|consen 162 -------------------------------------------------------------------------------- 161 (652)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhc
Q 004622 254 HNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSI 333 (741)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 333 (741)
. ..+...
T Consensus 162 ------------------------------------------------------------------------~-~~q~v~ 168 (652)
T KOG2376|consen 162 ------------------------------------------------------------------------Q-LLQSVP 168 (652)
T ss_pred ------------------------------------------------------------------------H-HHHhcc
Confidence 0 000000
Q ss_pred cCC-CCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 334 SDN-KSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS-------VDFRLSRGIAQVNEGKYASAISIFD 405 (741)
Q Consensus 334 ~~p-~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~g~~~~A~~~~~ 405 (741)
..| ++-+.+++.+.++...|+|.+|++.+..+.+.|.+.+...+... .-+...++.++...|+..+|..+|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 001 23334445555555555555555555555555555554433331 2356788999999999999999999
Q ss_pred HHHHhCCCCHHHHH-------------------------------------------------HHHHHHHHcccHHHHHH
Q 004622 406 QILKEDPMYPEALI-------------------------------------------------GRGTARAFQRELEAAIS 436 (741)
Q Consensus 406 ~al~~~p~~~~~~~-------------------------------------------------~la~~~~~~~~~~~A~~ 436 (741)
..++.+|.+..... +.+...+..+..+.+.+
T Consensus 249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99998775432111 11111111111122211
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q 004622 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACV----- 510 (741)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al----- 510 (741)
...+.-...|....-.............+.+|..++....+.+|.+ ..+...++.+.+.+|+++.|++.+...+
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 1111111122222222223333333447889999999999999987 6788899999999999999999999433
Q ss_pred ---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622 511 ---KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (741)
Q Consensus 511 ---~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (741)
+.. ..+.+.-.+-..++..++-+.|...+.+++.- .+.....+...+..-.+.|+-++|...+++.++.
T Consensus 409 s~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 221 12333334445566666655566655555543 3333446667788888889999999999999999
Q ss_pred CcccHHHHHHHHHHHHHCCChHHHHHHHH
Q 004622 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (741)
Q Consensus 581 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (741)
+|++.+++..+...|... +.+.|..+=+
T Consensus 488 n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 488 NPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred CCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999998888877765 4566655443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=3.1e-14 Score=149.13 Aligned_cols=164 Identities=9% Similarity=-0.026 Sum_probs=114.4
Q ss_pred hhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHH
Q 004622 312 SSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391 (741)
Q Consensus 312 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 391 (741)
|..++..|++++|+..++++++.+|.+...+.. +..++..|.+......... .........|........+|.++
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVAR----VLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHH----HHhccCcCCCCcHHHHHHHHHHH
Confidence 556677889999999999999999999876664 5555555544433332111 22223455566666667777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHH
Q 004622 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVE 467 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~ 467 (741)
...|++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++...|..+ ..+..+|.++...|++++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 7788888888888888887777777777777777777888888887777777665332 234567777777777777
Q ss_pred HHHHHHHHHhhCC
Q 004622 468 AIQDLSKALEFEP 480 (741)
Q Consensus 468 A~~~~~~al~~~p 480 (741)
|+..+++++...|
T Consensus 205 A~~~~~~~~~~~~ 217 (355)
T cd05804 205 ALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHhcccc
Confidence 7777777765554
No 85
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3e-11 Score=118.86 Aligned_cols=445 Identities=12% Similarity=0.054 Sum_probs=342.8
Q ss_pred HHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622 57 RILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (741)
Q Consensus 57 ~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 135 (741)
.-|+-.|.-+ -+...|..-|.--.+++++..|...+++||..|-.+...++..+.+-++.....-|...+.+|+.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 3455555555 556667778888888889999999999999999888889999999999999999999999998888876
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccCCCCcccccccccCC
Q 004622 136 QSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSS 215 (741)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (741)
-...+...+
T Consensus 140 VdqlWyKY~----------------------------------------------------------------------- 148 (677)
T KOG1915|consen 140 VDQLWYKYI----------------------------------------------------------------------- 148 (677)
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 444111110
Q ss_pred CCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccc
Q 004622 216 HDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNE 295 (741)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (741)
T Consensus 149 -------------------------------------------------------------------------------- 148 (677)
T KOG1915|consen 149 -------------------------------------------------------------------------------- 148 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc
Q 004622 296 RHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK 375 (741)
Q Consensus 296 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (741)
..--..|+..-|.++|++-+...|+ ..++......-.+....+.|.. .+++..-
T Consensus 149 -----------------ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~--------IYerfV~ 202 (677)
T KOG1915|consen 149 -----------------YMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARS--------IYERFVL 202 (677)
T ss_pred -----------------HHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhe
Confidence 0011235566688999999988865 4556666666667777777776 5566555
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HH
Q 004622 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA--GE 450 (741)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~ 450 (741)
.. ..+..|+..+..-...|+...|...|+++++.-.++. ..+...|..-..+..++.|.-.|.-++..-|.+ ..
T Consensus 203 ~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 203 VH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred ec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 55 4577899999999999999999999999998765543 334455566667788999999999999998887 33
Q ss_pred HHHHHHHHHHHcCCh---HHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----
Q 004622 451 AWKRRGQARAALGES---VEAI-----QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---- 518 (741)
Q Consensus 451 ~~~~la~~~~~~~~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---- 518 (741)
.+..+-..--+-|+. ++++ -.|++.++.+|.+-++|+..-.+-...|+.+.-.+.|++++...|....
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W 361 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW 361 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence 444444444445553 3333 3577888999999999999999999999999999999999998776431
Q ss_pred ---HHHHHHHHH---HHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHH
Q 004622 519 ---AYTYLGLAL---SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (741)
Q Consensus 519 ---~~~~la~~~---~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 588 (741)
.+..+-.++ +...+.+.+.+.|+.++++-|.. ...|...|.....+.+...|.+.+-.++...|. ....
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlF 440 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHH
Confidence 222222222 34789999999999999998864 668888999999999999999999999999998 4556
Q ss_pred HHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc-----ccchhhHHHHh
Q 004622 589 HLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS-----FAGLTLMEILI 663 (741)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~ 663 (741)
-....+-.++++++.....|++.++..|++ ... |...|.+-..+|+.+.|...|....+.+. ..+-.....-.
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~-c~~-W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPEN-CYA-WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHh-hHH-HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence 666777889999999999999999999998 555 88999999999999999988888755543 34455556677
Q ss_pred cCCCchhHhhhHHHHHhhh
Q 004622 664 PSSRNIGAKDCIPRMYVKR 682 (741)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~ 682 (741)
..|.++.|...|++.+...
T Consensus 519 ~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcchHHHHHHHHHHHHHhc
Confidence 8899999999999887754
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=1.9e-13 Score=143.19 Aligned_cols=305 Identities=12% Similarity=-0.029 Sum_probs=225.2
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (741)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 453 (741)
+|..+..+..+|..+...|+.+.+...+.++....|.+ .+.....+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 57788889999999999999999999999998887754 466778899999999999999999999999999987776
Q ss_pred HHHHHHHHcCC----hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004622 454 RRGQARAALGE----SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (741)
Q Consensus 454 ~la~~~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (741)
. +..+...|+ ...+...+.......|.....+..+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 555555444 44444444443356677778888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc--cHHHHH---HHHHHHHHCCC
Q 004622 530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYH---LRGLLLHGLGQ 600 (741)
Q Consensus 530 ~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~ 600 (741)
.|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ...... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999999876432 35668999999999999999999999876662 221111 22333344454
Q ss_pred hHHHHHH--H-HHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc---C---Cc------ccchhhHHHHhcC
Q 004622 601 HKKAIKD--L-SSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS---T---VS------FAGLTLMEILIPS 665 (741)
Q Consensus 601 ~~~A~~~--~-~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~---~~------~~~~~l~~~~~~~ 665 (741)
...+..+ . .......|...........+.++...|+.+.|......+.. . .. ......+..+...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333333 1 11111112121112134688888999999998855544322 1 11 2334456777899
Q ss_pred CCchhHhhhHHHHHhhh
Q 004622 666 SRNIGAKDCIPRMYVKR 682 (741)
Q Consensus 666 g~~~~A~~~~~~~~~~~ 682 (741)
|++.+|+..+..+...-
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999987776543
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=3.3e-13 Score=127.61 Aligned_cols=368 Identities=13% Similarity=0.057 Sum_probs=269.9
Q ss_pred hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHH--HHH----H------
Q 004622 305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKF--CVT----R------ 372 (741)
Q Consensus 305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~--~~~----~------ 372 (741)
.+....+|.++|+.|+|++|+..|+-+...+..+.....+++.+++-.|.|.+|.....++.+- +.. .
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 4667789999999999999999999999988778889999999999999999998753333211 000 0
Q ss_pred ---h---hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 004622 373 ---I---SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (741)
Q Consensus 373 ---~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 446 (741)
+ -..-....+-.+.+|.+++..-.|++|++.|.+++..+|+....-..++.||+++.-++-+.+.+.-.++..|
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 0 0011122244567888888899999999999999999999888888999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHH----------------------------HhhCCC----CHHHHHHHHHHHH
Q 004622 447 SAGEAWKRRGQARAALGESVEAIQDLSKA----------------------------LEFEPN----SADILHERGIVNF 494 (741)
Q Consensus 447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------------------l~~~p~----~~~~~~~la~~~~ 494 (741)
+.+.+....+..+++.=+-..|....... ++.-|. -|++..++...|.
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL 296 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL 296 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec
Confidence 99888777776665532222222221111 111121 3677888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC------cccHHHHHHHHHHHHHcC
Q 004622 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LD------RNFLEAWGHLTQFYQDLA 565 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~------~~~~~~~~~la~~~~~~~ 565 (741)
++++..+|+..++. ++|..+.-+...|.++...|+--...+.++-+-+ +- -+.......++.+++-..
T Consensus 297 ~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 297 NQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF 373 (557)
T ss_pred ccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence 99999999888764 5899999999999999998886665555544432 21 122345667788888889
Q ss_pred ChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004622 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTR 645 (741)
Q Consensus 566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 645 (741)
++++.+.++...-...-++....+++|.++...|++.+|.+.|-+.-..+-.+.... ...+++||...+..+-|+..+-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y-~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILY-KSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHH-HHHHHHHHHhcCCchHHHHHHH
Confidence 999999999888887778888899999999999999999999988766554442222 5688999999999999996543
Q ss_pred hhc-cCCcccch-hhHHHHhcCCCchhHhhhHH
Q 004622 646 LLK-STVSFAGL-TLMEILIPSSRNIGAKDCIP 676 (741)
Q Consensus 646 ~~~-~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 676 (741)
... +....+.+ -++...+.++.+--|-..|.
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 322 22222222 23455556666555544443
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.65 E-value=1.9e-12 Score=136.81 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 461 (741)
.+++.+|..|-..|++++|+.+.++++...|..++.+...|.++-+.|++.+|.+.++.+..+++.+--.....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred cCChHHHHHHHHHHHhhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 462 LGESVEAIQDLSKALEFEPN--S-------ADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
.|+.++|...+....+.+.+ . .......|.+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999998877665421 1 223456789999999999999999988775
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=4.2e-14 Score=138.36 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=158.2
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--
Q 004622 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-- 450 (741)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-- 450 (741)
..+..++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4567788999999999999999999999999999999876 67899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622 451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (741)
Q Consensus 451 -~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (741)
+++.+|.++... |++++|++.+++++..+|++......+..+....+ . ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence 688999999876 78999999999999999998765533332211100 0 012235
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc
Q 004622 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (741)
Q Consensus 522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 582 (741)
.+|.++...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..+++......|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 78888999999999999999999987654 57999999999999999999998888776665
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.62 E-value=5.8e-14 Score=137.39 Aligned_cols=189 Identities=15% Similarity=0.060 Sum_probs=158.7
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---
Q 004622 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD--- 484 (741)
Q Consensus 411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 484 (741)
++..+..++.+|..+...|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455688999999999999999999999999999999876 57899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 004622 485 ILHERGIVNFKF--------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (741)
Q Consensus 485 ~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 556 (741)
+++.+|.++... |++++|++.+++++..+|++..++..+..+....+ ........
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-----------------~~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-----------------RLAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----------------HHHHHHHH
Confidence 688999999876 78999999999999999998766543332211100 01223457
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622 557 LTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM 616 (741)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 616 (741)
+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..+++......|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8899999999999999999999997754 68999999999999999999999888776655
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.61 E-value=2e-12 Score=136.72 Aligned_cols=293 Identities=14% Similarity=0.064 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 460 (741)
.++++..+.++...|++++|+++++.....-.+....+-..|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677888899999999999999999888888888999999999999999999999999999999999999999888873
Q ss_pred HcC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004622 461 ALG-----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA-AVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (741)
Q Consensus 461 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 534 (741)
... +.+.-...|++.....|....+.. +...+..-..|.. +..++...+.. .-|.+...+-.+|....+..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 333 467778888888888876432211 1111111111221 22222222221 22333333333332222111
Q ss_pred HHHHHHHHHHHh---------------Cccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 004622 535 KAEEAHLKAIQL---------------DRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (741)
Q Consensus 535 ~A~~~~~~al~~---------------~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (741)
-....+...... .|.. ..+++.++..|...|++++|+.++++++...|..++.+...|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 111111111110 0111 12345555666566666666666666666666666666666666666
Q ss_pred CCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCC--c----------ccchhhHHHHhcC
Q 004622 598 LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTV--S----------FAGLTLMEILIPS 665 (741)
Q Consensus 598 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~----------~~~~~l~~~~~~~ 665 (741)
.|++.+|.+.++.+-.+++.+ ..+....+..+.+.|+.++|........... | +.....|+.+.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLAD--RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655554 3324444555555666666654444432211 1 1223345555556
Q ss_pred CCchhHhhhHHHH
Q 004622 666 SRNIGAKDCIPRM 678 (741)
Q Consensus 666 g~~~~A~~~~~~~ 678 (741)
|++..|+..|..+
T Consensus 319 ~~~~~ALk~~~~v 331 (517)
T PF12569_consen 319 GDYGLALKRFHAV 331 (517)
T ss_pred hhHHHHHHHHHHH
Confidence 6665555555443
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=5.9e-12 Score=122.10 Aligned_cols=297 Identities=12% Similarity=0.023 Sum_probs=199.5
Q ss_pred hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhcc-CCccHHH
Q 004622 305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKS-KSISVDF 383 (741)
Q Consensus 305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ 383 (741)
+......|..-+..|+|..|.+...+.-+..+.....+..-+.+.-.+|+.+.+-. ++.++.+. .......
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~--------yL~eaae~~~~~~l~v 155 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANR--------YLAEAAELAGDDTLAV 155 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHH--------HHHHHhccCCCchHHH
Confidence 34444557777778888888888888887777777777777777777787777766 45444443 4445566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HH--HHHHHHH--
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EA--WKRRGQA-- 458 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~--~~~la~~-- 458 (741)
.+.++......|+++.|..-..++++..|.++.++.....+|...|++.+...++.+..+..--+. +. +-..+..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 777888888888888888888888888888888888888888888888888877777665432221 11 1111111
Q ss_pred HHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622 459 RAALGE---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (741)
Q Consensus 459 ~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 535 (741)
+.+..+ .+.-..+++..-..-.+++.+...++.-+...|+.++|.+....+++..-+.. .... .-...-++...
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~ 312 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEP 312 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchH
Confidence 111222 22222234433333345567777777777788888888888887777543322 1111 12335667777
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSR 613 (741)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (741)
=++..++.++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+.++.++.
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 777777777777777777778888888888888888888877777765 56677777888888888888777777764
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=7.7e-14 Score=123.38 Aligned_cols=101 Identities=21% Similarity=0.138 Sum_probs=39.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (741)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 535 (741)
|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHhCcccHHHHHH
Q 004622 536 AEEAHLKAIQLDRNFLEAWGH 556 (741)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~ 556 (741)
|+..|++++...|+++..+.+
T Consensus 111 Ai~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 111 AREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred HHHHHHHHHHhCCCChHHHHH
Confidence 333333333333333333333
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=5.8e-14 Score=124.16 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=92.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 004622 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (741)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 549 (741)
..++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4667777777653 4556777777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 004622 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (741)
Q Consensus 550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (741)
++.+++++|.++...|++++|+..|++++...|+++..+..+|.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777766665543
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=1.6e-12 Score=119.46 Aligned_cols=177 Identities=20% Similarity=0.189 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (741)
Q Consensus 434 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (741)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555556667777777 7777777777777777777777777777777777667777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHH
Q 004622 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (741)
Q Consensus 514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 593 (741)
|+++.+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777666666777777777
Q ss_pred HHHHCCChHHHHHHHHHh
Q 004622 594 LLHGLGQHKKAIKDLSSG 611 (741)
Q Consensus 594 ~~~~~g~~~~A~~~~~~a 611 (741)
+....|++.+|...-.+-
T Consensus 211 ~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 211 VVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHhhcCChHHHHhhcccc
Confidence 777777777776655443
No 96
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.52 E-value=2.2e-14 Score=134.87 Aligned_cols=109 Identities=21% Similarity=0.183 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 004622 39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (741)
Q Consensus 39 ~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 117 (741)
-+..+++||++|.|++||+||++++..+ .|+..+.|||.+|++++.|..|..+|+.++.+|..+.+||.++|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999 599999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 004622 118 RKEEALSVWEKGYEHALHQSADLKQFLELEE 148 (741)
Q Consensus 118 ~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 148 (741)
...+|...++.+|.+.|++.+ ++..++.+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E-LkK~~a~i~ 209 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE-LKKSLARIN 209 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH-HHHHHHHhc
Confidence 999999999999999999988 555554433
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=8.6e-13 Score=123.23 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCC--hHHHHH
Q 004622 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLAN--SEKALE 572 (741)
Q Consensus 496 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 572 (741)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++.+.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 556677777777777777777777777777777777777777777777777777777777777764 56566 477777
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 573 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
.++++++.+|+++.+++.+|..+...|++++|+.+|+++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8888887777777777778888888888888888888877777766
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=4.2e-12 Score=115.31 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=133.3
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004622 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (741)
Q Consensus 445 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 524 (741)
.++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+...-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34444455556666667777888888888777777877777777788888888888888888888888888777777776
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC---Ch
Q 004622 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QH 601 (741)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~ 601 (741)
.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++.+| +.
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 777777777788888888888888888888888888888888888888888888888887777777887777766 45
Q ss_pred HHHHHHHHHhhhhcCCc
Q 004622 602 KKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 602 ~~A~~~~~~al~~~~~~ 618 (741)
.-|.++|.++++++|.+
T Consensus 208 ~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHHhChHh
Confidence 66778888888888755
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.52 E-value=2.1e-12 Score=142.24 Aligned_cols=209 Identities=17% Similarity=0.085 Sum_probs=178.2
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---
Q 004622 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--- 448 (741)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--- 448 (741)
.+..-.|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence 345567888999999999999999999999999999999999999999999999999988776655 555544444
Q ss_pred ----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 449 ----------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 449 ----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
..+++.+|.||-.+|+.++|...|+++++.+|+++.+++++|..|... +.++|+.++.+++..
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999988 999999999998876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH--------HHH------------HHHHHcCChHHHHH
Q 004622 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG--------HLT------------QFYQDLANSEKALE 572 (741)
Q Consensus 513 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~la------------~~~~~~~~~~~A~~ 572 (741)
+...+++.++..++.+.+..+|.+.+.+. .++ ..|...++|++++.
T Consensus 179 --------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 179 --------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred --------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 66667888888888888888888755422 122 56777888999999
Q ss_pred HHHHHHhhCcccHHHHHHHHHHHHH
Q 004622 573 CLQQVLYIDKRFSKAYHLRGLLLHG 597 (741)
Q Consensus 573 ~~~~al~~~p~~~~~~~~la~~~~~ 597 (741)
+++.+++.+|.+..+...++.+|..
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHHH
Confidence 9999999999999999999888873
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.3e-10 Score=112.92 Aligned_cols=282 Identities=12% Similarity=-0.012 Sum_probs=173.7
Q ss_pred chhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc
Q 004622 351 KWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQR 429 (741)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~ 429 (741)
..|++..|.. ...+..+..+...-.++.-+.+.-..||++.|-.++.++-+..+++ ..+...++.+....|
T Consensus 96 ~eG~~~qAEk--------l~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 96 FEGDFQQAEK--------LLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred hcCcHHHHHH--------HHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4455555555 3333334444444455555555666666666666666665552222 344555566666666
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHH--HHHHHH--HHHHcCCHHHHH-
Q 004622 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADI--LHERGI--VNFKFKDFNAAV- 503 (741)
Q Consensus 430 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~--~~~la~--~~~~~~~~~~A~- 503 (741)
++..|.....++++..|.++.+......+|...|++......+.+.-+..--+ .+. +-..+. ++.+.++-..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 66666666666666666666666666666666666666666555554432211 111 111110 011111111111
Q ss_pred --HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622 504 --EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (741)
Q Consensus 504 --~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (741)
.+++..-..-..++.....++.-+...|++++|.++.+++++..-+.. ....++ ...-+++..=++..++.++..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhC
Confidence 123222222334566677778888889999999999999888765432 211111 234578888888888889999
Q ss_pred cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRL 646 (741)
Q Consensus 582 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 646 (741)
|+++..+..+|.++.+.+.|.+|..+|+.+++..|+. .. +..+|.++.++|+..+|-.+++.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~-~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SD-YAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hh-HHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999999999999999888874 55 78899999999999988866554
No 101
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=2e-13 Score=118.77 Aligned_cols=114 Identities=21% Similarity=0.206 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC------ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004622 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSY------EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110 (741)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 110 (741)
-..+.+++++|.+|+|++|..-|+.||++.| ...+|.|||.|.++++.++.|+.+|.++|+++|.+.+|+.+++
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 4457999999999999999999999999662 2344899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 111 CAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
.+|.++.++++|+..|.+.++++|.+.. +..++..+...+
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~e-ar~~i~rl~~~i 215 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRRE-AREAIARLPPKI 215 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHH-HHHHHHhcCHHH
Confidence 9999999999999999999999999998 887777666555
No 102
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=3.6e-13 Score=129.82 Aligned_cols=294 Identities=16% Similarity=0.140 Sum_probs=216.4
Q ss_pred HHhhhhHHHhcCChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622 308 HDKLSSDSASLNDSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383 (741)
Q Consensus 308 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (741)
+...|..+++.|++..-+..|+.+++....+.. .+..++.+|+-.++|.+|++. ....+.+.+.....-..+..
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y--H~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY--HTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh--hhhhHHHHHHhcchhccccc
Confidence 344589999999999999999999998877655 566789999999999999884 22333555666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccc--------------------HHHHHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM------YPEALIGRGTARAFQRE--------------------LEAAISD 437 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~ 437 (741)
--++|..+-..|.|++|+.++.+-+..... ...+++++|.+|...|+ ++.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 678999999999999999999988765322 25789999999988774 3345555
Q ss_pred HHHHHHhCCC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 004622 438 FTEAIQSNPS------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVED 505 (741)
Q Consensus 438 ~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~ 505 (741)
|..-+++... ...++-++|+.|+-.|+|+.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 5554444322 23467788888888999999988877666654322 34788889999999999999999
Q ss_pred HHHHHHhC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHH
Q 004622 506 LSACVKLD----KE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALEC 573 (741)
Q Consensus 506 ~~~al~~~----p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~ 573 (741)
|+..+.+. .. .....+.+|..|.-..++++||.++.+-+.+..+ ...+++.||..+...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 98876542 22 2456778899999999999999998887766432 356788889999999999999888
Q ss_pred HHHHHhhC-----cc-cHHHHHHHHHHHHHCCChHH
Q 004622 574 LQQVLYID-----KR-FSKAYHLRGLLLHGLGQHKK 603 (741)
Q Consensus 574 ~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~ 603 (741)
.++.++.. |. ...+..++...-..+|..+.
T Consensus 338 ae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 338 AELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 88777642 21 23455666666666665443
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=2.3e-12 Score=120.31 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=91.4
Q ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 004622 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVE 504 (741)
Q Consensus 428 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~ 504 (741)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 556677777777777777777777777777777777777777777777777777777777777753 55565 477777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (741)
Q Consensus 505 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 551 (741)
.++++++.+|+++.+++.+|..+...|++++|+.+++++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777777777777777777777777777777777777766543
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=7.6e-11 Score=107.27 Aligned_cols=180 Identities=19% Similarity=0.148 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 460 (741)
...+-....+.+..|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+...+...-.+..
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 34444556667778888888888888888888888888888888888888888888888888888888888887777778
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 004622 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAE 537 (741)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~ 537 (741)
.+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-..|.++..+..+|.+++-+| ++.-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877665 466788
Q ss_pred HHHHHHHHhCcccHHHHHHHHHH
Q 004622 538 EAHLKAIQLDRNFLEAWGHLTQF 560 (741)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~ 560 (741)
++|.++++++|.+..+++.+-.+
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHH
Confidence 88888888888777776655444
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.51 E-value=3.2e-12 Score=117.59 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004622 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL 476 (741)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 476 (741)
...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666666777788998888 8999999999999999999999888899998888889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 004622 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (741)
Q Consensus 477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 556 (741)
...|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 004622 557 LTQFYQDLANSEKALECLQQVL 578 (741)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~al 578 (741)
++.+....|++.+|.....+-+
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhhcCChHHHHhhccccc
Confidence 9999999999999987765443
No 106
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.49 E-value=2.8e-13 Score=130.59 Aligned_cols=283 Identities=18% Similarity=0.142 Sum_probs=212.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHH
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGEAWKRR 455 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~l 455 (741)
.-|.-+++.|++...+.+|+.+++...++ ..+|..+|..|+.+++|++|+++-..-+-+ .-......-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 34777889999999999999999987776 356788999999999999999885443322 22234456789
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 004622 456 GQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSAC 509 (741)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a 509 (741)
|+.+...|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887765422 35789999999987764 34456666665
Q ss_pred HHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622 510 VKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577 (741)
Q Consensus 510 l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (741)
+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+.... ..++.++|.++.-.|+++.|+++|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 5553322 2567788999999999999999888877765443 358899999999999999999999998
Q ss_pred HhhCc------ccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC--c---hHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622 578 LYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP--H---LIWNLTRWRNLCFNAWPFIRRRLLCTRL 646 (741)
Q Consensus 578 l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 646 (741)
+.+.- ..+...+.+|..|.-..++++|+.++++-+.+..+ + ...+ ++.+|..+..+|..++|+.+...
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra-cwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA-CWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhhhhHHHHHHHHHH
Confidence 76532 23566889999999999999999999998765321 1 1234 88999999999999999965544
Q ss_pred hc-----cCCc----ccchhhHHHHhcCCCch
Q 004622 647 LK-----STVS----FAGLTLMEILIPSSRNI 669 (741)
Q Consensus 647 ~~-----~~~~----~~~~~l~~~~~~~g~~~ 669 (741)
.. -.++ ....+|.......|..+
T Consensus 341 hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 341 HLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 21 1111 24455555555555533
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=4.9e-12 Score=139.44 Aligned_cols=206 Identities=11% Similarity=-0.095 Sum_probs=179.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----
Q 004622 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----- 483 (741)
Q Consensus 409 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----- 483 (741)
..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 357888999999999999999999999999999999999999999999999999887777665 5555555444
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 004622 484 --------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (741)
Q Consensus 484 --------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 549 (741)
.+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+++..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 89999999999999999999999999999999999999999999999 999999999999876
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHH--------------------HHHHHHHHHHCCChHHHHHHHH
Q 004622 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------YHLRGLLLHGLGQHKKAIKDLS 609 (741)
Q Consensus 550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~ 609 (741)
+...++|..+..++.+.+..+|++.+. +.-+=..|...++|++++..++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 566678899999999999888876443 2223377888899999999999
Q ss_pred HhhhhcCCchHHHHHHHHHHHHHh
Q 004622 610 SGSRTMMPHLIWNLTRWRNLCFNA 633 (741)
Q Consensus 610 ~al~~~~~~~~~~~~~~la~~~~~ 633 (741)
.+++.+|.| .++ ...++.||..
T Consensus 248 ~iL~~~~~n-~~a-~~~l~~~y~~ 269 (906)
T PRK14720 248 KILEHDNKN-NKA-REELIRFYKE 269 (906)
T ss_pred HHHhcCCcc-hhh-HHHHHHHHHH
Confidence 999999999 666 8888888863
No 108
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=5.6e-09 Score=107.03 Aligned_cols=523 Identities=14% Similarity=0.109 Sum_probs=286.9
Q ss_pred hhhhhhhHHHHHHHhHHHHHHHHHHH--hcCCHHHHHHHHHHHHh-ccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 004622 22 EIDELVRVDSVMASAITARIELAKLC--SLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL 98 (741)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~Ai~~~~~al~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 98 (741)
.+.++++-.++--.+...|....+-. -..-|..=-.+|++++. +..-++.|..-....+++|+...-...|+++|..
T Consensus 52 al~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALra 131 (835)
T KOG2047|consen 52 ALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRA 131 (835)
T ss_pred HHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 34456666666555555554433321 22334444467777766 4466788888888889999999999999999988
Q ss_pred CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhc
Q 004622 99 DPTL--LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSE 176 (741)
Q Consensus 99 ~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (741)
-|-- ...+-..-.-...-|-++-++..|++-|+++|...+.....|........+.+...
T Consensus 132 LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la------------------ 193 (835)
T KOG2047|consen 132 LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA------------------ 193 (835)
T ss_pred CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH------------------
Confidence 7733 22343444455666778899999999999999886644444433333332222111
Q ss_pred cccccCccchhhhhccCCCcccccCCCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCC
Q 004622 177 SGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNG 256 (741)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (741)
.+.+++....-. ..+...-|.+.+......|.....+. .+.- +.+
T Consensus 194 -~vln~d~f~sk~----------gkSn~qlw~elcdlis~~p~~~~sln----------vdai-------iR~------- 238 (835)
T KOG2047|consen 194 -TVLNQDEFVSKK----------GKSNHQLWLELCDLISQNPDKVQSLN----------VDAI-------IRG------- 238 (835)
T ss_pred -HhcCchhhhhhc----------ccchhhHHHHHHHHHHhCcchhcccC----------HHHH-------HHh-------
Confidence 000000000000 00000001111111111111111000 0000 000
Q ss_pred CCCCCCCCCCCCcccccccCCCCccccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCC
Q 004622 257 SSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDN 336 (741)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 336 (741)
...+-.......+-.|+..|.+.|.|++|...|++++..--
T Consensus 239 ---------------------------------------gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~ 279 (835)
T KOG2047|consen 239 ---------------------------------------GIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM 279 (835)
T ss_pred ---------------------------------------hcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence 00001112334666789999999999999999999997542
Q ss_pred CCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 004622 337 KSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE 416 (741)
Q Consensus 337 ~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 416 (741)
. ..-...+-..|. .+++..-.+... .............+.-+.++..-.-...... -.=.-++..+|++..
T Consensus 280 t-vrDFt~ifd~Ya---~FEE~~~~~~me---~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~--~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 280 T-VRDFTQIFDAYA---QFEESCVAAKME---LADEESGNEEDDVDLELHMARFESLMNRRPL--LLNSVLLRQNPHNVE 350 (835)
T ss_pred e-hhhHHHHHHHHH---HHHHHHHHHHHh---hhhhcccChhhhhhHHHHHHHHHHHHhccch--HHHHHHHhcCCccHH
Confidence 2 111222222222 222221110000 0000001111122222222222111111110 011223456777777
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHH
Q 004622 417 ALIGRGTARAFQRELEAAISDFTEAIQS-NPS-----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADIL 486 (741)
Q Consensus 417 ~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~ 486 (741)
.|.....+ ..|+..+-+..|..++.. +|. ....|..+|..|...|+.+.|...|+++.+..-.. ..+|
T Consensus 351 eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 351 EWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred HHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 76655444 356677777777777653 443 23567777888888888888888888877764222 4567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622 487 HERGIVNFKFKDFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (741)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 548 (741)
..-|..-.+..+++.|+++.+.+...-.. +..+|..++......|-++.....|++++++.-
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 77777777777788888877777653111 123455566666667777777777777777776
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--ccHHHHHH---HHHHHHHCCChHHHHHHHHHhhhhcCCchHHHH
Q 004622 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHL---RGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNL 623 (741)
Q Consensus 549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 623 (741)
-.|....+.|..+....-++++.+.|++.+.+.+ .-.++|.. ....-+.-...+.|...|++|++..|......+
T Consensus 509 aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 509 ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6677777777777777777888888888777653 33333332 222223334667788888888877776555565
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 624 TRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 624 ~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
+...+..-...|--..|+..|+..
T Consensus 589 yLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666677777777777777555543
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.47 E-value=2.1e-12 Score=133.95 Aligned_cols=224 Identities=16% Similarity=0.119 Sum_probs=199.3
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (741)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 456 (741)
-|........++..+...|-..+|+.+|++ +..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 344455667899999999999999999997 56778889999999999999999999998 677788888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 536 (741)
.+.....-|++|.++.+.. +..+...+|......++|.++.++++..++++|-....|+.+|.+..+.+++..|
T Consensus 465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 8876665566666655442 4557778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (741)
..+|..++..+|++..+|++++.+|...++-.+|...++++++.+-++..+|.+.-.+....|.+++|++.+.+.+...
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999997653
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=2.3e-11 Score=133.68 Aligned_cols=198 Identities=10% Similarity=-0.026 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622 338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA 417 (741)
Q Consensus 338 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 417 (741)
++..+..+-.+....|..+++..+.-....... -.-|.+ ....+++.-.......+|.++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 88 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQVL--------------ERHAAV----HKPAAALPELLDYVRRYPHTELF 88 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHHHH--------------HHhhhh----cchHhhHHHHHHHHHhccccHHH
Confidence 455555555566666766666654222111111 111222 22333344444445567888888
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (741)
Q Consensus 418 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (741)
+..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..++.+|.++...|
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 004622 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553 (741)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 553 (741)
++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+-...
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 88888888888888888888888888888888888888888888888876443333
No 111
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.1e-12 Score=126.25 Aligned_cols=118 Identities=22% Similarity=0.235 Sum_probs=101.8
Q ss_pred HHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cc-C--------------ChhhHHHHHHHHHhhhcHHHHHHHHHHHH
Q 004622 33 MASAITARIELAKLCSLRNWSKAIRILDSLLA-QS-Y--------------EIQDICNRAFCYSQLELHKHVIRDCDKAL 96 (741)
Q Consensus 33 ~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~-~~-~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al 96 (741)
.+.+-..|..++.+|+.|+|..|+..|++|+. ++ . -..++.|+|.||++++.|.+|+..|+++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556677889999999999999999999986 22 0 11226899999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 97 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
.++|+|.+|+|++|.++..+|+++.|+..|+++++++|+|.. +..-+..+....
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka-~~~el~~l~~k~ 338 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA-ARAELIKLKQKI 338 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 666665554444
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.43 E-value=3.4e-12 Score=126.10 Aligned_cols=256 Identities=16% Similarity=0.073 Sum_probs=192.7
Q ss_pred HHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004622 347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426 (741)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 426 (741)
+-+|-.|+|..++++ .. ......+......+.+.++++..|+++..+..... ..+....+...++..+.
T Consensus 9 rn~fy~G~Y~~~i~e-------~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~ 77 (290)
T PF04733_consen 9 RNQFYLGNYQQCINE-------AS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLS 77 (290)
T ss_dssp HHHHCTT-HHHHCHH-------HH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHH-------hh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHh
Confidence 356688999999974 22 22233334556777889999999998877655533 22333456666776665
Q ss_pred HcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622 427 FQRELEAAISDFTEAIQSN--PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (741)
Q Consensus 427 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (741)
..++.+.++..+...+... +.++......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHH
Confidence 5556677777666554332 235566677788888899999999988754 568888888999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc
Q 004622 505 DLSACVKLDKENKSAYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (741)
Q Consensus 505 ~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 582 (741)
.++.+-+.+.+..-+...-+++.+..| .+.+|...|++..+..+.++..++.++.++..+|++++|...+.+++..+|
T Consensus 153 ~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 153 ELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 999998888777766666677777666 589999999998888888899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHCCCh-HHHHHHHHHhhhhcCCc
Q 004622 583 RFSKAYHLRGLLLHGLGQH-KKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~ 618 (741)
++++++.+++.+...+|+. +.+.+++.+....+|++
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 9999999999999999998 66778888888888987
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.42 E-value=4e-11 Score=131.79 Aligned_cols=144 Identities=12% Similarity=-0.002 Sum_probs=107.1
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (741)
Q Consensus 442 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (741)
....|.+++++..+|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..+++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34466677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (741)
Q Consensus 522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 585 (741)
.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 7777777777777777777777777777777777777777777777777777777776654433
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.42 E-value=3.9e-12 Score=125.69 Aligned_cols=257 Identities=14% Similarity=0.053 Sum_probs=195.3
Q ss_pred HHHhcCChhhHHHHHHHhhccCC-CCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHH
Q 004622 314 DSASLNDSNTNSESYSKSSISDN-KSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV 392 (741)
Q Consensus 314 ~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 392 (741)
..|-.|+|..++..++ ....+| ........+.+++..+|++...+.+ +....+....+...++..+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e-----------i~~~~~~~l~av~~la~y~~ 77 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE-----------IKKSSSPELQAVRLLAEYLS 77 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH-----------S-TTSSCCCHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH-----------hccCCChhHHHHHHHHHHHh
Confidence 4566899999998777 333332 2444667788888889988766653 22333444555566666665
Q ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 004622 393 NEGKYASAISIFDQILKED--PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (741)
Q Consensus 393 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 470 (741)
..++-+.++..++..+... +.++......|.++...|++++|++.+.+. .+.++......++..+++++.|.+
T Consensus 78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHH
Confidence 5567777777776655332 234566677788888999999999988764 567888888999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 004622 471 DLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (741)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 548 (741)
.++.+.+.+.+..-+....+++.+..| .+.+|...|++.....+.++..+..++.++..+|+|++|...+.+++..+|
T Consensus 153 ~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 153 ELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 999999988777666666666766666 699999999999888888999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCcccHHH
Q 004622 549 NFLEAWGHLTQFYQDLANS-EKALECLQQVLYIDKRFSKA 587 (741)
Q Consensus 549 ~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~ 587 (741)
.++.++.+++.+....|+. +.+.+++.+....+|+++.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999998 66778888888889987654
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.4e-09 Score=101.05 Aligned_cols=419 Identities=14% Similarity=0.050 Sum_probs=260.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (741)
Q Consensus 43 ~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 121 (741)
+-.+++..+|..||++.+.-.+.+ .+-..+..+|.||.+..+|..|-..++..-.+.|...+..+..+..+.+.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 556788999999999999999988 4777799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhhccccccCcCCccchhhhhccccccCccchhhhhccCCCcccccC
Q 004622 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (741)
Q Consensus 122 A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (741)
|+........ ++. +..-.-.+...+... +++. +.....+.
T Consensus 97 ALrV~~~~~D----~~~-L~~~~lqLqaAIkYs-------e~Dl-----------------~g~rsLve----------- 136 (459)
T KOG4340|consen 97 ALRVAFLLLD----NPA-LHSRVLQLQAAIKYS-------EGDL-----------------PGSRSLVE----------- 136 (459)
T ss_pred HHHHHHHhcC----CHH-HHHHHHHHHHHHhcc-------cccC-----------------cchHHHHH-----------
Confidence 9987766532 233 221111111111000 0000 00000000
Q ss_pred CCCcccccccccCCCCCCCCCCCcccccCCCCCCccccccccCcccccccccCCCCCCCCCCCCCCCcccccccCCCCcc
Q 004622 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (741)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (741)
T Consensus 137 -------------------------------------------------------------------------------- 136 (459)
T KOG4340|consen 137 -------------------------------------------------------------------------------- 136 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCccccccccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHH
Q 004622 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (741)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 361 (741)
....+..++.....|-..|+.|++++|++-|+.+++...-++...++++.++++.+++..|.+.
T Consensus 137 ----------------Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 137 ----------------QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred ----------------hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 0001245566777888999999999999999999999988999999999999999999998884
Q ss_pred HHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 441 (741)
...+. ++-....|.-.-....-|.--...|+ -+..-..++ .+++...+.++++.++++.|.+.+...
T Consensus 201 iSEIi----eRG~r~HPElgIGm~tegiDvrsvgN---t~~lh~Sal------~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 201 ISEII----ERGIRQHPELGIGMTTEGIDVRSVGN---TLVLHQSAL------VEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHHHH----HhhhhcCCccCccceeccCchhcccc---hHHHHHHHH------HHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 22211 11122222211000000000001111 111111121 456677788888999998887765432
Q ss_pred HHhC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 004622 442 IQSN--PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-- 517 (741)
Q Consensus 442 l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-- 517 (741)
--.. .-+|..+.+++..- ..+++.+...-+.-.+.++|-..+.+-++-.+|.+..-|+-|-..+.+ +|...
T Consensus 268 PPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk 342 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYK 342 (459)
T ss_pred CCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHH
Confidence 1111 12345566666543 346677778888888888998788888888889888877777666543 44332
Q ss_pred ---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHH--HcC---ChHHHHHHHHHHHhhCcccHHH
Q 004622 518 ---SAYTYLGLALS-SIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQ--DLA---NSEKALECLQQVLYIDKRFSKA 587 (741)
Q Consensus 518 ---~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~--~~~---~~~~A~~~~~~al~~~p~~~~~ 587 (741)
...+.+-..++ ..-..++|.+-+...-....+ -+..++ .+.. ..+ ....|++.|+.++++. ..+
T Consensus 343 ~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~---kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPV 416 (459)
T KOG4340|consen 343 FLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE---KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPV 416 (459)
T ss_pred HhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHH
Confidence 22233322222 234455555554443322111 111111 1111 111 1234555555555542 456
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622 588 YHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW 621 (741)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 621 (741)
....++++....+|..+.+.|....+.-.++..|
T Consensus 417 lMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 417 LMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 7778888999999999999998888876665444
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=1.1e-11 Score=109.47 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=46.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (741)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 551 (741)
+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+++
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (741)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 583 (741)
..++.+|.++...|++++|+..|+++++.+|+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 44444444444444444444444444444443
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.4e-10 Score=107.63 Aligned_cols=286 Identities=12% Similarity=0.070 Sum_probs=219.3
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHH
Q 004622 314 DSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN 393 (741)
Q Consensus 314 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 393 (741)
.+.+..+|..||+++..-.+..|.+...+..++.||+...++..|.. |++.+....|......+..+..+++
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~--------CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAE--------CYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhChHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 004622 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473 (741)
Q Consensus 394 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 473 (741)
.+.+..|+.....+...+.-...++-..+.+.+..+++..+....++.- ..+..+...+.|.+.++.|+++.|++-|+
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHH
Confidence 9999999988876654322223555566667777777777766555431 12567788889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------------------------HHHHHHHH
Q 004622 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----DKEN-------------------------KSAYTYLG 524 (741)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~la 524 (741)
.+++...-++-+-++++.++++.|++..|+++..+.++. +|.- ..+....+
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 999998888888999999999999999999988877654 3321 13345567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChH
Q 004622 525 LALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (741)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 602 (741)
-++++.|+++.|.+.+...--... -+|..+.+++..-. .+++-+...-+.-.+.++|--++...++-.+|++..-|+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 778888888888776654322211 13556666665432 356667777777778888877788888888888887777
Q ss_pred HHHHHHHH
Q 004622 603 KAIKDLSS 610 (741)
Q Consensus 603 ~A~~~~~~ 610 (741)
-|...+-+
T Consensus 328 lAADvLAE 335 (459)
T KOG4340|consen 328 LAADVLAE 335 (459)
T ss_pred HHHHHHhh
Confidence 77665543
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.38 E-value=1.6e-11 Score=108.50 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (741)
Q Consensus 403 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (741)
.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (741)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (741)
+..++.+|.++...|++++|+..++++++.+|++.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 55555555555555555555555555555555544
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=2.4e-11 Score=126.21 Aligned_cols=221 Identities=17% Similarity=0.152 Sum_probs=196.1
Q ss_pred CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 004622 338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA 417 (741)
Q Consensus 338 ~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 417 (741)
.......++..+...|-...|.. .+++ ...|-....+|...|+..+|..+..+-++ .|+++..
T Consensus 397 ~Wq~q~~laell~slGitksAl~--------I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~l 459 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALV--------IFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRL 459 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHH--------HHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchh
Confidence 44466788899999999999988 3333 33455778899999999999999999998 5666899
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (741)
Q Consensus 418 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (741)
|..+|.+.....-|++|.++.+.. +..+...+|......++|.++..+++..++++|-....|+.+|.+..+.+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh
Confidence 999999988887788887777664 34477778888888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (741)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (741)
+++.|.++|..++.++|++..+|.+++..|...++-.+|...+.++++.+-++..+|-+...+..+.|.+++|++.|.+.
T Consensus 534 k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HhhC
Q 004622 578 LYID 581 (741)
Q Consensus 578 l~~~ 581 (741)
+.+.
T Consensus 614 l~~~ 617 (777)
T KOG1128|consen 614 LDLR 617 (777)
T ss_pred HHhh
Confidence 8763
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=2.2e-09 Score=127.31 Aligned_cols=374 Identities=12% Similarity=0.026 Sum_probs=261.8
Q ss_pred hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc-cCCccHHH
Q 004622 305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK-SKSISVDF 383 (741)
Q Consensus 305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~ 383 (741)
.......+..+...|++.+|+..+..+-... .-.......+......|++..... ....+.. .....+..
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~-~~~~ll~~~a~~l~~~g~~~~l~~--------~l~~lp~~~~~~~~~l 411 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDAQ-LLRDILLQHGWSLFNQGELSLLEE--------CLNALPWEVLLENPRL 411 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHhHHHHHhcCChHHHHH--------HHHhCCHHHHhcCcch
Confidence 4455667788888999999988766553221 112233344555556666655444 2222211 11222334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----- 449 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----- 449 (741)
....+..+...|++++|...+..+....+. .......++.++...|++++|...+++++...+...
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 567788889999999999999988764321 134455678888999999999999999988544322
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q 004622 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-------- 515 (741)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 515 (741)
.+...+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+.+++.....
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 356778889999999999999999998764321 245677899999999999999999999885221
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc---HHH
Q 004622 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKA 587 (741)
Q Consensus 516 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 587 (741)
....+..+|.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+.. ...
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 1234567888999999999999999999876321 34566778999999999999999999997753321 111
Q ss_pred H----HHHHHHHHHCCChHHHHHHHHHhhhhcCCc--hHHHHHHHHHHHHHhCCCHHHHHHHHHhhcc-----CCc----
Q 004622 588 Y----HLRGLLLHGLGQHKKAIKDLSSGSRTMMPH--LIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS-----TVS---- 652 (741)
Q Consensus 588 ~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-----~~~---- 652 (741)
. ......+...|+.+.|..++.......+.. .....+..++.++...|++++|...+..... +.+
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 1 112244556899999999988776533222 1112246789999999999999866555322 111
Q ss_pred ccchhhHHHHhcCCCchhHhhhHHHHHhhhhhccc
Q 004622 653 FAGLTLMEILIPSSRNIGAKDCIPRMYVKRFTDSL 687 (741)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (741)
.....++..+...|+..+|...+..+........+
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 25667789999999999999999998876644444
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.37 E-value=1.1e-11 Score=127.48 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 004622 40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (741)
Q Consensus 40 ~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 118 (741)
..++..+|..|+|++|+..|++||+++ .+..+++++|.+|.++|++++|+.++++++.++|+++.+++++|.++..+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 467889999999999999999999999 7788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
+++|+..|++++.++|++.. +...+..+....
T Consensus 86 ~~eA~~~~~~al~l~P~~~~-~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSR-FTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHH
Confidence 99999999999999999999 766666665444
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=6.4e-09 Score=123.29 Aligned_cols=268 Identities=15% Similarity=0.020 Sum_probs=128.6
Q ss_pred hhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHH
Q 004622 311 LSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390 (741)
Q Consensus 311 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 390 (741)
+|..+...|++++|...+++++...|....... ......+|.+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------------~~a~~~lg~~ 500 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSR-------------------------------------IVATSVLGEV 500 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH-------------------------------------HHHHHHHHHH
Confidence 466677789999999999999875443221000 0011234444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------CcHHHHHHHH
Q 004622 391 QVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAWKRRG 456 (741)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~la 456 (741)
+...|++++|...+++++...... ..++..+|.++...|++++|...+++++.... .....+..+|
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 555555555555555554432111 12334445555555555555555555444311 0112233445
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH----HHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPN-----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYT----YLG 524 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~----~la 524 (741)
.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.++....+.. ..... ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 5555555555555555555443211 12234445555555555555555555554432111 00000 011
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCc------ccHHHHHHHHHH
Q 004622 525 LALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLL 594 (741)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~ 594 (741)
..+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++.... ....++..+|.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 233335555555555544333221111 1133455556666666666666666554321 123345556666
Q ss_pred HHHCCChHHHHHHHHHhhhhc
Q 004622 595 LHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~ 615 (741)
+...|+.++|...+.+++++.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 123
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=1.9e-07 Score=96.13 Aligned_cols=323 Identities=10% Similarity=-0.007 Sum_probs=212.3
Q ss_pred ccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 333 ISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI-----SVDFRLSRGIAQVNEGKYASAISIFDQI 407 (741)
Q Consensus 333 ~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~a 407 (741)
..+|+++.-+.....++ .|+..+.+.. ..+.+...+|. -...|...|..|...|+.+.|..+|+++
T Consensus 343 RQn~~nV~eW~kRV~l~--e~~~~~~i~t-------yteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLY--EGNAAEQINT-------YTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred hcCCccHHHHHhhhhhh--cCChHHHHHH-------HHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 44566666555554443 4444444443 22222222222 2357788888888888899998888888
Q ss_pred HHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCh
Q 004622 408 LKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------------------AGEAWKRRGQARAALGES 465 (741)
Q Consensus 408 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~------------------~~~~~~~la~~~~~~~~~ 465 (741)
++..-.. ..+|..-|..-.+..+++.|+++.+++...-.. ...+|..++......|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 8754322 467777787777888888888888887653211 224577777777788888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHH---HHHHHHcCCHHHHHHHH
Q 004622 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYL---GLALSSIGEYKKAEEAH 540 (741)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l---a~~~~~~~~~~~A~~~~ 540 (741)
+.-...|++.+.+.--.|....+.|..+....-++++.+.|++.+.+.+ .-.+.|... ...-+.....+.|...|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888888888888777888888888888888888888888888888753 333444432 22233445688888889
Q ss_pred HHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHH-----HCCChHHHHHHHHHhhh
Q 004622 541 LKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH-----GLGQHKKAIKDLSSGSR 613 (741)
Q Consensus 541 ~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~ 613 (741)
+++++..|.. ...+...+.+-..-|--..|+..|+++-..-+.. -.+.+=.+|. ..| ...-...|++|++
T Consensus 574 EqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yG-v~~TR~iYekaIe 650 (835)
T KOG2047|consen 574 EQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIE 650 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH
Confidence 9998888743 2345556666667788888888888876543321 1111111221 112 2234567888888
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccC-Cc----ccchhhHHHHhcCCC
Q 004622 614 TMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKST-VS----FAGLTLMEILIPSSR 667 (741)
Q Consensus 614 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~l~~~~~~~g~ 667 (741)
.-|+.....+....+..-.++|..+.|..+|.....- +| ..+-+--++-.+.|+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 8887755666778889999999999998766654322 23 244444556667777
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.33 E-value=5.8e-11 Score=102.23 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=91.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (741)
Q Consensus 43 ~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 121 (741)
+..++..|+++.|...|+-...++ .+...|+++|.|+-.+|+|++|+..|.+++.++|+++.+++..|.|++.+|+.+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 677899999999999999999999 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChH
Q 004622 122 ALSVWEKGYEHALHQSA 138 (741)
Q Consensus 122 A~~~~~~al~l~p~~~~ 138 (741)
|+..|+.++...-+++.
T Consensus 122 A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 122 AIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHHhccChh
Confidence 99999999999855555
No 125
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.8e-11 Score=113.58 Aligned_cols=118 Identities=26% Similarity=0.362 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Q 004622 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (741)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 564 (741)
-+..-|.-+++.++|.+|+..|.++|+++|+++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34555666666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChH
Q 004622 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (741)
Q Consensus 565 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 602 (741)
|++++|++.|++++.++|++...+.+|..+-.++++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 77777777777777777777766666666666655554
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.31 E-value=9.2e-11 Score=101.03 Aligned_cols=102 Identities=15% Similarity=0.059 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHH
Q 004622 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (741)
Q Consensus 514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 593 (741)
++.....+.+|..+...|++++|...|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45556666666666677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHCCChHHHHHHHHHhhhhc
Q 004622 594 LLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~ 615 (741)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777666654
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=2.3e-09 Score=107.32 Aligned_cols=156 Identities=22% Similarity=0.168 Sum_probs=130.9
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004622 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (741)
Q Consensus 446 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 525 (741)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.+++..++.++|.+.+++++.++|..+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHH
Q 004622 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605 (741)
Q Consensus 526 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 605 (741)
.+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|.. ..+..+...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 88888888888888888888888888888888888888887665543 4556677788888888
Q ss_pred HHHHHhhhhcCCc
Q 004622 606 KDLSSGSRTMMPH 618 (741)
Q Consensus 606 ~~~~~al~~~~~~ 618 (741)
..+.++.+....+
T Consensus 446 ~~l~~A~~~~~~~ 458 (484)
T COG4783 446 IFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHhccCC
Confidence 8888887765333
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.22 E-value=4.5e-09 Score=105.26 Aligned_cols=154 Identities=20% Similarity=0.158 Sum_probs=141.2
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004622 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490 (741)
Q Consensus 411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 490 (741)
.|....+++..+..++..|++++|...++..+...|+|+..+...+.++...|+..+|.+.+++++.++|..+....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 37778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Q 004622 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570 (741)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 570 (741)
..|++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|... .+..+...|++++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999999999999987766543 45667778999999
Q ss_pred HHHHHHHHhhC
Q 004622 571 LECLQQVLYID 581 (741)
Q Consensus 571 ~~~~~~al~~~ 581 (741)
+..+..+.+..
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99999888765
No 129
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.17 E-value=1.3e-10 Score=88.54 Aligned_cols=67 Identities=30% Similarity=0.335 Sum_probs=64.7
Q ss_pred ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 004622 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL 134 (741)
Q Consensus 68 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p 134 (741)
++..|.++|.+++..|+|++|+..|+++++++|+++.+++.+|.++..+| ++++|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999999999999999999999999999999999999999999 79999999999999998
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.16 E-value=1.1e-08 Score=98.90 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=132.7
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHH
Q 004622 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW 452 (741)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~ 452 (741)
..+..++..|...+..|+|++|+..|++++..+|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467778899999999999999999999999999988644 48999999999999999999999999988764 568
Q ss_pred HHHHHHHHHcC---------------C---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004622 453 KRRGQARAALG---------------E---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (741)
Q Consensus 453 ~~la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 514 (741)
+.+|.++...+ + ..+|+..++..++..|++.-+ .+|...+..+-.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence 88888764443 1 346788899999999977432 111111111100
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQV 577 (741)
Q Consensus 515 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (741)
.-..--+.+|..|.+.|.|..|+.-++.+++..|+. .+++..++.+|...|..++|.......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011122356777777788888888888888777664 457777778888888877777665443
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.15 E-value=7.3e-09 Score=97.77 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=115.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHH
Q 004622 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW 452 (741)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~ 452 (741)
.....++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 346778899999999999999999999999998876 58899999999999999999999999999988764 578
Q ss_pred HHHHHHHHHcC-----------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004622 453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (741)
Q Consensus 453 ~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (741)
+.+|.++.... ...+|+..|+..+...|++..+- +|...+..+-. .-..--+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~ 145 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHH
Confidence 88888765542 24477788888888888763221 11111111000 0011123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCChHHH
Q 004622 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKA 570 (741)
Q Consensus 522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A 570 (741)
.+|..|.+.|.+..|+..++.+++..|+.+ .++..++.+|..+|..+.|
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 456666677777777777777777666653 4566666677777766633
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.15 E-value=1e-09 Score=113.01 Aligned_cols=113 Identities=22% Similarity=0.284 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
+...|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 004622 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (741)
++++|+..|++++.++|++..+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888888887777775544
No 133
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.11 E-value=1.9e-10 Score=91.52 Aligned_cols=81 Identities=30% Similarity=0.349 Sum_probs=73.0
Q ss_pred hcCCHHHHHHHHHHHHhccC---ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 004622 48 SLRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALS 124 (741)
Q Consensus 48 ~~g~~~~Ai~~~~~al~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 124 (741)
.+|+|+.|+..|+++++..+ +...++.+|.||+++|+|++|+..+++ +..+|.++..++.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 37999999999999999885 456688899999999999999999999 99999999999999999999999999999
Q ss_pred HHHHH
Q 004622 125 VWEKG 129 (741)
Q Consensus 125 ~~~~a 129 (741)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.11 E-value=2.6e-08 Score=96.19 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 004622 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT 521 (741)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 521 (741)
.+..++..|......|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45566677777777777777777777777777766443 36777777777777777777777777766653 5566
Q ss_pred HHHHHHHHcCC------------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622 522 YLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (741)
Q Consensus 522 ~la~~~~~~~~------------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 583 (741)
.+|.++...+. ..+|+..|++.++..|++..+ .+|...+..+- ..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~~ 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---DR 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---HH
Confidence 67766544431 235566666666666665321 11111111110 00
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH-LIWNLTRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
-..--+..|..|.+.|.|..|+.-++.+++..|+. .....+..++..|..+|..++|....+.+
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11223356777888888888888888888877765 22333778888888888888887655544
No 135
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.10 E-value=3.4e-08 Score=94.56 Aligned_cols=308 Identities=13% Similarity=0.047 Sum_probs=211.5
Q ss_pred hHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCc---hhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccH
Q 004622 305 HDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSS---DSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISV 381 (741)
Q Consensus 305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 381 (741)
+......|..+|...++++|+..+.+.+....+.. ..+-.+..+..++|.|+++....-..... ..-.++.....
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~--a~~~~ds~~~~ 83 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT--ARELEDSDFLL 83 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 44556678999999999999999999997653322 24445667778889888887753222221 11122333345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------H
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------E 450 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------~ 450 (741)
.++.++++.+...-++.+++.+....+..-... ..+...+|..+..++.++++++.|+++++...++. .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 677788888888888888888887777643222 25666788888888889999999998887644332 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 004622 451 AWKRRGQARAALGESVEAIQDLSKALEFEPN----S------ADILHERGIVNFKFKDFNAAVEDLSACVKLD------K 514 (741)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p 514 (741)
++..+|..+....++++|+-+..++.++... + .-+++.++..+...|...+|.++.+++.++. +
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6778888888888999988888888776422 1 2356778888888888888888888887652 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChH-----HHHHHHHHHHhhCcc
Q 004622 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSE-----KALECLQQVLYIDKR 583 (741)
Q Consensus 515 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~-----~A~~~~~~al~~~p~ 583 (741)
-.......+|.+|...|+.+.|..-|+++...... ...++...+.++....-.. .|++.-++++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 22355667888888888888888888888765322 2345555555554433323 377777777765432
Q ss_pred c------HHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 584 F------SKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 584 ~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
- ...+..++.+|..+|.-++-...+.++-+.
T Consensus 324 IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 324 IGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 1 345677888888888777776666665444
No 136
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.4e-10 Score=102.89 Aligned_cols=100 Identities=26% Similarity=0.321 Sum_probs=91.5
Q ss_pred HHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 004622 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (741)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 112 (741)
+++..-+..++++|..+.|..||.+|++||.++|. +..|.|||.||+++++|+.+..+|+++++++|+..++++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34445557799999999999999999999999955 57789999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhc
Q 004622 113 FSALGRKEEALSVWEKGYEHA 133 (741)
Q Consensus 113 ~~~~g~~~~A~~~~~~al~l~ 133 (741)
++....+++|+..+++++.+.
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHhhccccHHHHHHHHHHHHH
Confidence 999999999999999997654
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.09 E-value=1.4e-08 Score=95.87 Aligned_cols=52 Identities=8% Similarity=-0.112 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCChHHHHHHHHHhhhhcCCc-hHHHHHHHHHHHHHhCCCHHHH
Q 004622 589 HLRGLLLHGLGQHKKAIKDLSSGSRTMMPH-LIWNLTRWRNLCFNAWPFIRRR 640 (741)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A 640 (741)
+..|..|.+.|.+..|+..++.+++..|+. .....+..++.+|..+|..+.|
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 345566666666666666666666665554 1122355666666666666533
No 138
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.08 E-value=2e-10 Score=114.79 Aligned_cols=119 Identities=23% Similarity=0.248 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (741)
Q Consensus 35 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 113 (741)
++..-+.+++++|+.++|+.|+..|++||+++ +++..+.+||.++++.++|..|+.++.++++++|.+.++|+++|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 34555688999999999999999999999999 67888999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 004622 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK 154 (741)
Q Consensus 114 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 154 (741)
+.++++.+|+..|++...+.|+.+. ++..+..+.......
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~-~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPD-ATRKIDECNKIVSEE 122 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999998888887653
No 139
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=7e-10 Score=83.32 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q 004622 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (741)
Q Consensus 73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 137 (741)
+.+|..+++.|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999985
No 140
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7.2e-10 Score=104.79 Aligned_cols=103 Identities=24% Similarity=0.245 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CC----hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004622 36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YE----IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110 (741)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 110 (741)
+..-|-+++++|+.++|+.|+..|+++|... ++ ..+|.|||.|.+.+|||..|+.+|.+++.++|.+.+|+++=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3455789999999999999999999999966 33 445899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 111 CAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
.|++.+.++++|....+..+.++-+...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999999999999999988877765544
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-08 Score=97.18 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 004622 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG---ESVEAIQDLS 473 (741)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~ 473 (741)
.+.-+.-++.-+..+|++++.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4444555555566666666666666666666666666666666666666666666666665554433 2445556666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004622 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (741)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (741)
+++..+|.+..+...+|..++..|+|.+|+..++..++..|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6666666666666666666666666666666666666655444
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=1.1e-08 Score=94.06 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 004622 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (741)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 558 (741)
....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.++++++...|.+...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34456666666666666666666666666654442 346666667777777777777777777776666666666667
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 559 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
.++...|+...+...+..++. .+++|++.+++++..+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 766666666555544444432 2566677777777777766
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=3.2e-08 Score=87.99 Aligned_cols=198 Identities=18% Similarity=0.145 Sum_probs=133.8
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (741)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 458 (741)
..+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|...-++.+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34567788888888888889999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (741)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 538 (741)
++.-|++.-|.+.+.+-.+.+|++|---..+-..- ..-++.+|..-+.+-.+...+....|+..+.. +|+..+ ..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e~ 217 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-ET 217 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-HH
Confidence 88889999999998888888888875333222221 22356666655544333333333333322222 222211 12
Q ss_pred HHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622 539 AHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (741)
Q Consensus 539 ~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (741)
.++++.....++ .+.++.+|..+...|+.++|...|+-++..+
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 233333222222 3456667777777777777777777666543
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=1e-08 Score=88.18 Aligned_cols=104 Identities=24% Similarity=0.331 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR 455 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l 455 (741)
+.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445666666666666666766666666666654 3566666666666666666666666666665553 4556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 004622 456 GQARAALGESVEAIQDLSKALEFEPNSADI 485 (741)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 485 (741)
|.++...|++++|+..+++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666666665443
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.8e-08 Score=95.77 Aligned_cols=123 Identities=19% Similarity=0.119 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 004622 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---NSEKALECLQ 575 (741)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~ 575 (741)
.+.-+.-++..+..+|++..-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4455566666777788888888888888888888888888888888888888888888887766553 3567778888
Q ss_pred HHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW 621 (741)
Q Consensus 576 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 621 (741)
+++..+|.+..+.+.+|..++..|+|.+|...++..+...|.+.++
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 8888888888888888888888888888888888888877776443
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=9.1e-09 Score=94.37 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 004622 465 SVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEA 539 (741)
Q Consensus 465 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~ 539 (741)
+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444433333333 3344555555555555555555555555544332 23455555555555555555555
Q ss_pred HHHHHHhCcccHHHHHHHHHHHH
Q 004622 540 HLKAIQLDRNFLEAWGHLTQFYQ 562 (741)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~ 562 (741)
+++++.+.|.....+..+|.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 55555555555555555555554
No 147
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.9e-09 Score=93.47 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------c---CC----------hhhHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 004622 38 TARIELAKLCSLRNWSKAIRILDSLLAQ------S---YE----------IQDICNRAFCYSQLELHKHVIRDCDKALQL 98 (741)
Q Consensus 38 ~~~~~~~~~~~~g~~~~Ai~~~~~al~~------~---~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 98 (741)
.-+-+++++|+.|+|++|+..|..||.. . .+ ...+.|.+.|++..|+|-+++..|..+|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999641 1 12 223689999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 004622 99 DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK 154 (741)
Q Consensus 99 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 154 (741)
+|.|.+|+|++|.++...=+.++|...|.++|+++|.-......-+..+......+
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987765555565555555444
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.99 E-value=1.1e-08 Score=87.96 Aligned_cols=99 Identities=25% Similarity=0.266 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHH
Q 004622 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQ 559 (741)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~ 559 (741)
++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444444444444444444444444444333 2334444444444444444444444444443332 233444444
Q ss_pred HHHHcCChHHHHHHHHHHHhhCccc
Q 004622 560 FYQDLANSEKALECLQQVLYIDKRF 584 (741)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~p~~ 584 (741)
++...|++++|+..+++++...|++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4444444444444444444444433
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=4.5e-08 Score=87.06 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004622 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (741)
Q Consensus 415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (741)
+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH
Q 004622 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH-LKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 573 (741)
--|++.-|...+.+..+.+|+++.--..+=.. ...-+..+|..-+ +++...+.+ ...|+..+.. .|+..+ ...
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---LgkiS~-e~l 218 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LGKISE-ETL 218 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---HhhccH-HHH
Confidence 99999999999999999999998433222222 2234566666544 444443322 3333332222 222211 122
Q ss_pred HHHHHhhCccc-------HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHH
Q 004622 574 LQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIW 621 (741)
Q Consensus 574 ~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 621 (741)
++++.....++ .++++.+|..+...|+.++|...|+-++..+.-++++
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE 273 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVE 273 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHH
Confidence 33333332222 5679999999999999999999999998876555443
No 150
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.97 E-value=1.5e-06 Score=85.27 Aligned_cols=224 Identities=27% Similarity=0.310 Sum_probs=187.3
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCChHHHH
Q 004622 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI 469 (741)
Q Consensus 394 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~ 469 (741)
.+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 56778888888888887776 367888888999999999999999998887 67788888889999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (741)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 545 (741)
..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999888777555666666 88899999999999999988766 3456666667777888899999999999999
Q ss_pred hCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622 546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP 617 (741)
Q Consensus 546 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 617 (741)
..+. ....+..++..+...+++..|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888 68888899999999999999999999999888886777777777777777789999999998888875
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.96 E-value=2.9e-08 Score=91.28 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=80.8
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 004622 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (741)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 452 (741)
..+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 344555667777777777888888888888877765543 35677777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 004622 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (741)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (741)
..+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 7777777777666555544444332 2455666666666666554
No 152
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.96 E-value=3.4e-06 Score=82.71 Aligned_cols=204 Identities=27% Similarity=0.341 Sum_probs=179.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004622 380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (741)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 457 (741)
........+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 356777888899999999999999999987 678888999999999999999999999999999988877665666666
Q ss_pred -HHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Q 004622 458 -ARAALGESVEAIQDLSKALEFEP---NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLALSSIGE 532 (741)
Q Consensus 458 -~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 532 (741)
++...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+. ....+..++..+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 89999999999999999988776 35566777777788899999999999999999999 68999999999999999
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (741)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 583 (741)
++.|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999987778888888888778899999999999999887
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.95 E-value=5.2e-08 Score=86.69 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHH
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQAR 459 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~ 459 (741)
..+......++...+...++..+..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+...+|.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 34444456788888888888888888877 4566778888888888888888888888776554 34667778888
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (741)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (741)
...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 96 ~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888888888755 33334456677778888888888888888887763
No 154
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.95 E-value=2e-07 Score=89.38 Aligned_cols=295 Identities=15% Similarity=0.155 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC----C--cHHHHH
Q 004622 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNP----S--AGEAWK 453 (741)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~--~~~~~~ 453 (741)
-....|.-++...++++|+....+.+..-.+. ...+-.+..+...+|.+++++...-..+.... . ..+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999999999888764443 24455567788888888887766544443221 1 235788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 004622 454 RRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTY 522 (741)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~ 522 (741)
+++..+....++.+++.+-.-.+.+.... ..+...+|..+..++.++++++.|+.+++...++. .++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 88999988889999999888887765433 35677789999999999999999999998743332 56788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------cccHH
Q 004622 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRFSK 586 (741)
Q Consensus 523 la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~ 586 (741)
+|..+....++++|.-+..++.++.... .-+++.++..+..+|..-.|.++.+++.++. +-...
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar 247 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR 247 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999999988764321 3467788999999999999999999988763 22355
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHhhhhcCC--c---hHHHHHHHHHHHHHhCCCHHH-----HHHHHHhhcc-------
Q 004622 587 AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP--H---LIWNLTRWRNLCFNAWPFIRR-----RLLCTRLLKS------- 649 (741)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~---~~~~~~~~la~~~~~~g~~~~-----A~~~~~~~~~------- 649 (741)
....+|.+|...|+.+.|..-|+++...... + ...+ +...+.+.....-... |++..+.+.+
T Consensus 248 c~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~a-l~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 248 CLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEA-LDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 6778999999999999999999999765321 1 1222 4445555544333322 4433322211
Q ss_pred CCc--ccchhhHHHHhcCCCchhHhhhHHHH
Q 004622 650 TVS--FAGLTLMEILIPSSRNIGAKDCIPRM 678 (741)
Q Consensus 650 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (741)
... .....++.+|...|..++-...+..+
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 111 35667788888888877776666553
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=6.7e-08 Score=97.78 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=121.7
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCCc
Q 004622 384 RLSRGIAQVNEG---KYASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSA 448 (741)
Q Consensus 384 ~~~~a~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~ 448 (741)
++..|...+..+ ....|..+|.+++ ..+|....++..++.|++.. ....+|.+..+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 366777776554 4567888999999 88899899999999888765 23556777888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H
Q 004622 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-L 527 (741)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~ 527 (741)
+.++..+|.+....++++.|...|++++.++|+.+.+++..|.+..-.|+.++|+..++++++++|....+-...-.+ .
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888765444333333 3
Q ss_pred HHcCCHHHHHHHHHHH
Q 004622 528 SSIGEYKKAEEAHLKA 543 (741)
Q Consensus 528 ~~~~~~~~A~~~~~~a 543 (741)
+-..-.++|+..|-+-
T Consensus 418 ~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 418 YVPNPLKNNIKLYYKE 433 (458)
T ss_pred HcCCchhhhHHHHhhc
Confidence 3445566777666553
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=98.93 E-value=2.6e-08 Score=86.31 Aligned_cols=97 Identities=10% Similarity=0.011 Sum_probs=90.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
.-+-.+|.+|+|++|...|+-....+ .|+..+..+|.|+..+|+|++|+..|-.+..++++++...+..|.|++.+|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44667899999999999999998888 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChH
Q 004622 120 EEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~~ 138 (741)
+.|+..|+.++. .|.+..
T Consensus 122 ~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 122 AKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHHHHHh-CcchHH
Confidence 999999999998 576666
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=4.9e-09 Score=79.85 Aligned_cols=66 Identities=29% Similarity=0.423 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC-ChHHHHHHHHHhhhhcC
Q 004622 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGSRTMM 616 (741)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 616 (741)
+..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555554
No 158
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.92 E-value=9.8e-10 Score=104.00 Aligned_cols=225 Identities=17% Similarity=0.096 Sum_probs=176.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 464 (741)
-..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.+..|++...+..|...+..++.++.....+|...+.+....|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------HHHHHHHHHHcCCHHH
Q 004622 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---------YTYLGLALSSIGEYKK 535 (741)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~~~~~~ 535 (741)
..+|.+.++.++++.|++.+..-.++.+-. ..++ +-+.+..|....+ ...-|..+...|.++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhcccc
Confidence 999999999999999998766555444322 1111 1111222222111 1223666777888888
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (741)
++.++.+-+.....+...-.+ +..+.+..+++.++....+++..+|.........+.+-.-.|...++...++.++.+.
T Consensus 253 ~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 253 PVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred ceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence 888887766655544433333 6677788899999999999888888766666666666666778888889999999888
Q ss_pred CCc
Q 004622 616 MPH 618 (741)
Q Consensus 616 ~~~ 618 (741)
|.+
T Consensus 332 P~~ 334 (536)
T KOG4648|consen 332 PAV 334 (536)
T ss_pred ccc
Confidence 876
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.5e-06 Score=80.40 Aligned_cols=253 Identities=15% Similarity=0.072 Sum_probs=178.5
Q ss_pred HHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004622 347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426 (741)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 426 (741)
+-++-.|+|..++++ ....... +......+.+.+.|+..|.+..-+......- .....+...++....
T Consensus 16 Rn~fY~Gnyq~~ine--------~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINE--------AEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHhhHHHHHHHH--------HHhhccc-cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhh
Confidence 346678888888884 2222222 2556666777888888888876655443322 122355556666665
Q ss_pred HcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622 427 FQRELEAAISDFTEAIQSN--PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (741)
Q Consensus 427 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (741)
.-++.++-+.-....+... ..+......-|.++...|++++|+...... .+.++...-..++.++.+.+-|.+
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666555555544332 223345556677888999999999888762 356666666778888899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622 505 DLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (741)
Q Consensus 505 ~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (741)
.++++.+.+.+. .+..+|..+.. .+++.+|.-+|+..-+..|..+.....++.++..+|+|++|...++.++..
T Consensus 159 ~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 159 ELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999988876543 33344444433 456888999999988878888889999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHCCChHHHHH-HHHHhhhhcCCc
Q 004622 581 DKRFSKAYHLRGLLLHGLGQHKKAIK-DLSSGSRTMMPH 618 (741)
Q Consensus 581 ~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~ 618 (741)
++++++++.++..+-...|...++.+ .+.+.....|++
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999999999998888888876654 445555566766
No 160
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.92 E-value=8.5e-08 Score=85.32 Aligned_cols=117 Identities=21% Similarity=0.076 Sum_probs=69.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChH
Q 004622 495 KFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSE 568 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~ 568 (741)
..++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. +.+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3555666666666666666665 3445556666666666666666666666655433 235556666666666666
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
+|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 666666442 2223334556666666666666666666666553
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.91 E-value=1.8e-07 Score=93.48 Aligned_cols=98 Identities=21% Similarity=0.126 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc-------c
Q 004622 519 AYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------F 584 (741)
Q Consensus 519 ~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~ 584 (741)
.+..+|.+|... |++++|+.+|+++++..... ...+..+|.++...|+|++|+..|+++....-+ -
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444555555555 66666666666665543211 234455666666666666666666666543211 1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM 616 (741)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 616 (741)
...++..+.++...|++..|...+++....+|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12344555566666666666666666665554
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.91 E-value=6.9e-08 Score=103.47 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHh--CCCcH
Q 004622 383 FRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQR--------ELEAAISDFTEAIQS--NPSAG 449 (741)
Q Consensus 383 ~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~l~~--~~~~~ 449 (741)
-++..|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. +|.++
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence 34667777766554 778888888888888888888888777765432 123333344443332 44445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (741)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (741)
.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 5555555555555555555555555555555 345555555555555555555555555555555554
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=4.5e-08 Score=89.75 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (741)
Q Consensus 518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 594 (741)
..++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.+.|.....+..+|.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 444555555555566666666666655554432 23555556666666666666666666665555555555555555
Q ss_pred HH-------HCCChH-------HHHHHHHHhhhhcCCc
Q 004622 595 LH-------GLGQHK-------KAIKDLSSGSRTMMPH 618 (741)
Q Consensus 595 ~~-------~~g~~~-------~A~~~~~~al~~~~~~ 618 (741)
+. ..|+++ +|+..|++++..+|++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 55 444433 5556666666666655
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.90 E-value=2.1e-08 Score=82.20 Aligned_cols=89 Identities=31% Similarity=0.465 Sum_probs=33.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Q 004622 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (741)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 568 (741)
+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+...+..+|.++...|+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHH
Q 004622 569 KALECLQQV 577 (741)
Q Consensus 569 ~A~~~~~~a 577 (741)
+|...+.++
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 333333333
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.2e-08 Score=97.44 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=115.8
Q ss_pred CCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622 301 TNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS 380 (741)
Q Consensus 301 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (741)
.-..+...+.-|+.+|+.|+|..|...|++++..-+..-..- .++... . ....
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~------------~ee~~~--------~-------~~~k 256 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFD------------EEEQKK--------A-------EALK 256 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCC------------HHHHHH--------H-------HHHH
Confidence 446677888899999999999999999999987543211100 011000 0 0011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 460 (741)
.-++++++.++...++|..|+..+.++|..+|+|..+++..|.++...|+++.|+..|++++++.|.|..+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999888888888776
Q ss_pred HcCChHHH-HHHHHHHHhhCC
Q 004622 461 ALGESVEA-IQDLSKALEFEP 480 (741)
Q Consensus 461 ~~~~~~~A-~~~~~~al~~~p 480 (741)
....+.+. .+.|.+++..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 66555443 667777766543
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.89 E-value=2.5e-08 Score=81.73 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
++.+|..+...|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655666666666666666666666666666666665556666666666666
Q ss_pred ChHHHHHHHHHHHhhCC
Q 004622 464 ESVEAIQDLSKALEFEP 480 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p 480 (741)
+++.|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666555544
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.89 E-value=1.6e-07 Score=95.07 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622 465 SVEAIQDLSKAL---EFEPNSADILHERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (741)
Q Consensus 465 ~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 532 (741)
.+.|+..|.+++ .++|..+.++..++.+++.. ....+|....+++++++|.++.++..+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 344555566666 55565566655555555432 123445555556666666666666666666655566
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH-HHHCCChHHHHHHHHH
Q 004622 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQHKKAIKDLSS 610 (741)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 610 (741)
++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|....+-...-++ .+.....++|+..|-+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 66666666666666666666666666666666666666666666666666543333222222 3333444555555444
No 168
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=3.3e-07 Score=102.23 Aligned_cols=218 Identities=13% Similarity=0.036 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCChHHHHHH
Q 004622 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQD 471 (741)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~----~~~~~~la~~~~~~~~~~~A~~~ 471 (741)
-.+..+.|++.+..+|+....|...-..+.+.++.++|.+.+++++.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 345567788999999999999999999999999999999999999864 3332 23455555555566777778888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Q 004622 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-- 549 (741)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-- 549 (741)
|++|.+... ...++..|..+|...+.+++|.++++..++...+....|..+|..++.+.+-+.|...+.+|++.-|.
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 999888753 46788999999999999999999999999998888999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (741)
+.......|++-++.|+.+.+...|+..+..+|.-.+.|..+...-.+.|+.+.+...|++++.+.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 788888999999999999999999999999999999999999999999999999999999998765
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.88 E-value=8.9e-08 Score=102.60 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=76.2
Q ss_pred hCCCCHHHH--HHHHHHHHHccc---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------hHHHHHHHHHHH
Q 004622 410 EDPMYPEAL--IGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--------SVEAIQDLSKAL 476 (741)
Q Consensus 410 ~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al 476 (741)
.-|.++.+| +..|..+...+. ...|+.+|+++++++|++..++..++.++..... ...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345555444 455555555433 6678888888888888887777777766644321 223333333333
Q ss_pred hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 004622 477 EF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (741)
Q Consensus 477 ~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 551 (741)
.+ +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 32 344444555555555555555555555555555555 244555555555555555555555555555555543
No 170
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.8e-06 Score=79.98 Aligned_cols=262 Identities=13% Similarity=0.024 Sum_probs=194.9
Q ss_pred HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622 306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL 385 (741)
Q Consensus 306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (741)
+.+..+-+. |-.|+|..++..-.+.-... .+......+...|...|.+...+.+ +.........+..
T Consensus 10 d~LF~iRn~-fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~e-----------I~~~~~~~lqAvr 76 (299)
T KOG3081|consen 10 DELFNIRNY-FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISE-----------IKEGKATPLQAVR 76 (299)
T ss_pred hhHHHHHHH-HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccc-----------cccccCChHHHHH
Confidence 344444444 44789999988887776654 6777777888888888887766553 2222233344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
..+...-.-++.++-+....+.+.. +..+......-|.++...|++++|+....+. .+.++...-..++.+..
T Consensus 77 ~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 77 LLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHH
Confidence 5666666666666666665555443 2333455666778999999999999888773 34556666677888999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 539 (741)
+++-|.+.++++.+++. ...+..||..+.. .+++.+|.-+|++.-+..|..+......+.++..+|+|++|...
T Consensus 152 r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 99999999999998874 3445555555543 34789999999999998888999999999999999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCcccHHH
Q 004622 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL-ECLQQVLYIDKRFSKA 587 (741)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~ 587 (741)
++.++..++++++++.++..+-...|...++. +.+.+....+|.++.+
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999887765 4556666677876543
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.87 E-value=1e-08 Score=81.39 Aligned_cols=79 Identities=30% Similarity=0.307 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622 531 GEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 531 ~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (741)
|+++.|+.+++++++..|. +...++.+|.+++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|++.|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4445555555555544442 233444445555555555555555544 4444444444444455555555555555544
Q ss_pred HH
Q 004622 609 SS 610 (741)
Q Consensus 609 ~~ 610 (741)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.87 E-value=3.3e-05 Score=83.38 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=105.9
Q ss_pred HHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHc
Q 004622 315 SASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNE 394 (741)
Q Consensus 315 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 394 (741)
....++|.+|+....+.++.+|+..-+....|-.++++|+.++|.. +++......+.+...+-.+-.+|...
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~--------~Le~~~~~~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALK--------LLEALYGLKGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHH--------HHhhhccCCCCchHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999999999997 88888888888888888889999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 004622 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (741)
Q Consensus 395 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 447 (741)
|++++|..+|++++..+|+ .+.+..+-.+|.+.+.|.+=.+.--+..+..|.
T Consensus 91 ~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999 888888888888888776644443333334443
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=98.84 E-value=7.5e-08 Score=83.50 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=97.8
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (741)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 453 (741)
....+...+..+..|..++..|++++|..+|+-+...+|.+++.+..||.|+..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34455556778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 004622 454 RRGQARAALGESVEAIQDLSKALEFEPNSA 483 (741)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 483 (741)
..|.|+...|+.+.|...|..++. .|.+.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 999999999999999999999988 45443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.82 E-value=1.9e-07 Score=93.41 Aligned_cols=193 Identities=17% Similarity=0.121 Sum_probs=117.3
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHH
Q 004622 422 GTARAFQRELEAAISDFTEAIQSNP--S----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHER 489 (741)
Q Consensus 422 a~~~~~~~~~~~A~~~~~~~l~~~~--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l 489 (741)
|.+|...+++++|.+.|.++....- + ....+...+.++... ++++|+.++++++.+.-. + ...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444444555555555554433211 0 112344445554443 677777777777665311 1 4467778
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------cHHHHH
Q 004622 490 GIVNFKF-KDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-------FLEAWG 555 (741)
Q Consensus 490 a~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~ 555 (741)
|.+|... |++++|+++|++++..... . ...+..+|.++...|+|++|+..|+++....-+ -...+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 8888888 8899999999988876322 1 245677888899999999999999988765321 123556
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCccc-----HHHHHHHHHHHHH--CCChHHHHHHHHHhhhhc
Q 004622 556 HLTQFYQDLANSEKALECLQQVLYIDKRF-----SKAYHLRGLLLHG--LGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 615 (741)
..+.++...|++..|...+++....+|.. ......+-.++.. ...++.|+..|.+...++
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 77788888999999999999988888743 2333444444433 346777777777776665
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.81 E-value=1.6e-08 Score=75.83 Aligned_cols=63 Identities=30% Similarity=0.433 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 448 (741)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345566666666666666666666666666666666666666666666666666666666654
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.79 E-value=2.3e-06 Score=79.89 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=126.2
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---H
Q 004622 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---A 451 (741)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~ 451 (741)
...+..++..|...+..|++++|+..|+.+...+|.. ..+...++.++++.+++++|+..+++-+.+.|+++. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4457889999999999999999999999999988876 478899999999999999999999999999988754 5
Q ss_pred HHHHHHHHHHcC--------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004622 452 WKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (741)
Q Consensus 452 ~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 523 (741)
++..|.++...= -...|+..++..+...|++.-+-.....+ ..+...+ ..--..+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~I 173 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAI 173 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHH
Confidence 677777765432 24567788888888888763221110000 0000000 1111335
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622 524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (741)
Q Consensus 524 a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 584 (741)
|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 566666666666666666666655443 3455566666666666666655443333333443
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.78 E-value=2.8e-07 Score=89.59 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=86.3
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHH
Q 004622 381 VDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGEAWK 453 (741)
Q Consensus 381 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~ 453 (741)
....+..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|++++...|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555666655 55789999999999999999887 578899999999999999999999999888776 467788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 004622 454 RRGQARAALGESVEAIQDLSKALEFEPNSADI 485 (741)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 485 (741)
.+|.++...|++++|...|+++++.+|++..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 88888888888888988888888888877644
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.78 E-value=1.8e-07 Score=76.09 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=102.2
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHH
Q 004622 14 NKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDC 92 (741)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~ 92 (741)
+....++..-||.+-...+-.|-..++ ++--+-+.|+.+.|++.|+++|.+- .++.+|.|||.++--.|+.++|+.++
T Consensus 22 ~~~~aE~~lede~~~~~~~e~S~~LEl-~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDL 100 (175)
T KOG4555|consen 22 NLIPAESDLKDEEPDTQAIKASRELEL-KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDL 100 (175)
T ss_pred cccchhhhhcccCCchHHHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHH
Confidence 444556666777777776655555444 3334678999999999999999988 88999999999999999999999999
Q ss_pred HHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 93 DKALQLDPTLLQ----AYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 93 ~~al~~~p~~~~----a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
++++++.-+-.. ++..+|.+|..+|+.+.|...|+.+-++......
T Consensus 101 n~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 101 NKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 999999754433 8999999999999999999999999988765433
No 179
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=5e-06 Score=93.22 Aligned_cols=209 Identities=12% Similarity=0.000 Sum_probs=113.5
Q ss_pred HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 004622 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSN 445 (741)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 445 (741)
.+....+|++.-.|+..-..++..++.+.|.+.+++++.. ++... ..|..+-.....-|.-+...+.|+++.+..
T Consensus 1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence 3344445555555555555555555566666666665542 22221 222222222222344444455555555432
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 004622 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYL 523 (741)
Q Consensus 446 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l 523 (741)
+...++..|..+|...+++++|.++++.+++...+...+|..+|..+++.++-+.|...+.+|++.-|. +.......
T Consensus 1528 -d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1528 -DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred -chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 223455555556666666666666666666655555556666666666666666666666666665555 44555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (741)
Q Consensus 524 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (741)
|.+-++.|+.+.+...|+..+..+|.-.+.|.-+...-.+.|+.+.+...|++++.+
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555666666666666666666666666666666666666666666666666666543
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.76 E-value=3.3e-07 Score=89.08 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Q 004622 484 DILHERGIVN-FKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGH 556 (741)
Q Consensus 484 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~ 556 (741)
...+..+..+ ...|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444433 34455666666666666655555 3455556666666666666666666665555443 445555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622 557 LTQFYQDLANSEKALECLQQVLYIDKRFS 585 (741)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~al~~~p~~~ 585 (741)
+|.++...|++++|...|+++++..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56666556666666666666665555543
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=6.7e-08 Score=74.51 Aligned_cols=63 Identities=27% Similarity=0.332 Sum_probs=58.8
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
..+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++.+|+..|+++++.+|+++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 568899999999999999999999999999999999999999999999999999999998887
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=6.7e-08 Score=73.27 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=53.0
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 004622 80 SQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFL 144 (741)
Q Consensus 80 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 144 (741)
++.|+|++|+..+++++..+|++.++++.+|.+|...|++++|...+++++..+|+++. +...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE-YQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH-HHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH-HHHHH
Confidence 56788888998898888888988888888899999999999999999888888888766 44444
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=5.8e-07 Score=91.93 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=81.5
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (741)
Q Consensus 422 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 501 (741)
-.++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34444556677777777776666653 444566666666777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (741)
Q Consensus 502 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 543 (741)
|+.+.++++...|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777777777777777777777777777777777777666543
No 184
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=2.5e-05 Score=78.37 Aligned_cols=322 Identities=15% Similarity=0.058 Sum_probs=194.2
Q ss_pred HhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc--------cHHHHHHH
Q 004622 316 ASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI--------SVDFRLSR 387 (741)
Q Consensus 316 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 387 (741)
....+...+....+.+.....+.+.++...+..++-.|++..|.+. ....-....+. ..-+|.++
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~Kl-------L~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKL-------LLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHH-------HHhcccccccCccccchhhhheeecCc
Confidence 3445556666666777777777888888999999999999999884 22222222222 22345789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 004622 388 GIAQVNEGKYASAISIFDQILK-E--------DP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (741)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 449 (741)
|.+++..|.|.-+..+|.++++ . .| ...+.+++.|..|...|++-.|.++|.+++.....+|
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999996 1 11 2357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHH--------------HHhh----CCCC------HHHHHHHHHHHHHcC-----
Q 004622 450 EAWKRRGQARAALGE---SVEAIQDLSK--------------ALEF----EPNS------ADILHERGIVNFKFK----- 497 (741)
Q Consensus 450 ~~~~~la~~~~~~~~---~~~A~~~~~~--------------al~~----~p~~------~~~~~~la~~~~~~~----- 497 (741)
..|..+|.|.+...+ .++......+ .+-+ .+.. +..-..++.++.+.+
T Consensus 370 rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~ 449 (696)
T KOG2471|consen 370 RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLN 449 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCc
Confidence 999999999865321 1111000000 0000 0000 111111222211111
Q ss_pred CHHHHHHHHHHHHHh----------------------------CC-CCH-----------HHHHHHHHHHHHcCCHHHHH
Q 004622 498 DFNAAVEDLSACVKL----------------------------DK-ENK-----------SAYTYLGLALSSIGEYKKAE 537 (741)
Q Consensus 498 ~~~~A~~~~~~al~~----------------------------~p-~~~-----------~~~~~la~~~~~~~~~~~A~ 537 (741)
.-..--..+.-+... .| ..+ ..+-+.+.+-..+|+.-.|+
T Consensus 450 e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL 529 (696)
T KOG2471|consen 450 EKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKAL 529 (696)
T ss_pred hhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 000000000000000 01 110 23445666677778888888
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHH-----HHcCChHHHHHHHHHH---------------------------------Hh
Q 004622 538 EAHLKAIQLDRNFLEAWGHLTQFY-----QDLANSEKALECLQQV---------------------------------LY 579 (741)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~la~~~-----~~~~~~~~A~~~~~~a---------------------------------l~ 579 (741)
..-++.++. |+-..++..+|.+| .-+.+..+|...+.-- -+
T Consensus 530 ~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q 608 (696)
T KOG2471|consen 530 SAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQ 608 (696)
T ss_pred HHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcc
Confidence 777777654 33344555554443 4456666666554331 11
Q ss_pred hCccc-----HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch-HHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622 580 IDKRF-----SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL-IWNLTRWRNLCFNAWPFIRRRLLCTRL 646 (741)
Q Consensus 580 ~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 646 (741)
..|.. ...++++|.++.-+|++++|...+..+..+-+... +.+ ....-.+-..+|+...|+...+.
T Consensus 609 ~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A-~~lavyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 609 SVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQA-TVLAVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred cccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHH-HHHHHHHHHhcCCCcchHHHHHh
Confidence 11222 34578899999999999999999988887766321 233 44444555788888888855544
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.69 E-value=6.6e-06 Score=76.83 Aligned_cols=189 Identities=14% Similarity=0.039 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 004622 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTY 522 (741)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 522 (741)
+..++.-|....+.|++++|+..|+.+....|.. ..+...++..+++.+++++|+...++.+.+.|+++ .+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4556667777777777777777777777666654 34666677777777777777777777777766654 34555
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622 523 LGLALSSIG--------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (741)
Q Consensus 523 la~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 594 (741)
.|.+++..= -..+|+..|+..+...|++..+-.....+ ..+...+ ..--...|..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHHH
Confidence 555544321 12345555555566555543211100000 0000000 1112346777
Q ss_pred HHHCCChHHHHHHHHHhhhhcCCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCccc
Q 004622 595 LHGLGQHKKAIKDLSSGSRTMMPH-LIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFA 654 (741)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 654 (741)
|.+.|.+-.|+..++.+++..|+. .....+..+..+|..+|-.++|-..-+.+....|..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 888888888888888887765544 122237777788888888888887777776666644
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=3.8e-05 Score=82.94 Aligned_cols=227 Identities=14% Similarity=0.027 Sum_probs=172.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 004622 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (741)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 470 (741)
....+++..|.....+.++..|+.+.+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+++.++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678999999999999999999999999999999999999999988888877888888889999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHH---------HHHHHH
Q 004622 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIGEYK---------KAEEAH 540 (741)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~---------~A~~~~ 540 (741)
.|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+++.. |..+..+.......+ -|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999998 8888888899999999988887777777788888744 333444433333332 344455
Q ss_pred HHHHHhC-ccc-HHHHHHHHHHHHHcCChHHHHHHHHHHH-h-hCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622 541 LKAIQLD-RNF-LEAWGHLTQFYQDLANSEKALECLQQVL-Y-IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM 616 (741)
Q Consensus 541 ~~al~~~-~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al-~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 616 (741)
++.++.. +-. ..-....-.++..+|++++|...+..-+ + ..+.+...-......+...+++.+-.+...+.+..++
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 5555554 211 1112223345677889999999884333 3 3344444445667778888999999888889988888
Q ss_pred Cc
Q 004622 617 PH 618 (741)
Q Consensus 617 ~~ 618 (741)
++
T Consensus 258 Dd 259 (932)
T KOG2053|consen 258 DD 259 (932)
T ss_pred cc
Confidence 86
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=6.3e-07 Score=91.63 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=61.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 004622 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (741)
..++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+...
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344555555555555444433 23334555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHh
Q 004622 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (741)
Q Consensus 575 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (741)
++++...|++...|+.|+.+|...|+++.|+..+..+
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555555555555555555555555554433
No 188
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=5.1e-05 Score=80.77 Aligned_cols=338 Identities=13% Similarity=0.037 Sum_probs=206.9
Q ss_pred hcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHH---HhHHH-HHHHhhccCCccHHHHHHHHHHHH
Q 004622 317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK---RNKKF-CVTRISKSKSISVDFRLSRGIAQV 392 (741)
Q Consensus 317 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~ 392 (741)
..|+.+.|.+..+-. ++...|.+++....+..+++-|.--.- .+... .+.+..+ ++. +.-...|....
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence 357777776654432 355678888888887777776644211 11100 2222222 222 22234566777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 004622 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472 (741)
Q Consensus 393 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 472 (741)
..|-.++|..+|++.-. +-.+-..|...|.+++|.+..+.--.+ .....|++.|..+...++.+.|+++|
T Consensus 812 eLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 88999999999988654 334556777788888887766542221 12346777888888888888888888
Q ss_pred HHH----------HhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Q 004622 473 SKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKL-------------------- 512 (741)
Q Consensus 473 ~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------- 512 (741)
+++ +.-+| .++..|.+-|..+...|+.+.|+.+|..+-..
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 865 22233 24556777888888888888888888876432
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Cccc--HH------------HHHHHHHHHHHcC-ChHHH
Q 004622 513 -DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNF--LE------------AWGHLTQFYQDLA-NSEKA 570 (741)
Q Consensus 513 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~--~~------------~~~~la~~~~~~~-~~~~A 570 (741)
...+..+.+.+|+.|...|++.+|+..|.++-.. ..++ .+ -....+..|...| +...|
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~A 1041 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKA 1041 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHH
Confidence 2345567888999999999999999888776432 2221 11 1112233344444 45555
Q ss_pred HHHHHHH------Hh-----------------hCc-ccHHHHHHHHHHHHHCCChHHHHHHHHH------hhhhc-----
Q 004622 571 LECLQQV------LY-----------------IDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSS------GSRTM----- 615 (741)
Q Consensus 571 ~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~----- 615 (741)
+..|.++ ++ ++| .++..+...+..+....+|++|...+-. ++.+-
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5554432 11 233 3577788888888888888888765433 33321
Q ss_pred -----------CCc-------hHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcccchhhHHHHhcCCCchhHhhhHHH
Q 004622 616 -----------MPH-------LIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILIPSSRNIGAKDCIPR 677 (741)
Q Consensus 616 -----------~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (741)
|.. ....++..+|.+..++|.|..|.+-|.... ....-.+.++..|+.++- .+|..
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG-----dKl~AMraLLKSGdt~KI-~FFAn 1195 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG-----DKLSAMRALLKSGDTQKI-RFFAN 1195 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh-----hHHHHHHHHHhcCCcceE-EEEee
Confidence 110 122347788888899999988885444322 123445777888887653 34433
Q ss_pred H
Q 004622 678 M 678 (741)
Q Consensus 678 ~ 678 (741)
+
T Consensus 1196 ~ 1196 (1416)
T KOG3617|consen 1196 T 1196 (1416)
T ss_pred c
Confidence 3
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.67 E-value=7.4e-07 Score=74.70 Aligned_cols=94 Identities=24% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 004622 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLG 524 (741)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la 524 (741)
+++.+|.++-..|+.++|+..|++++...... ..+++.+|..+...|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34445555555555555555555555443222 234445555555555555555555555554444 334444445
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 004622 525 LALSSIGEYKKAEEAHLKAI 544 (741)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~al 544 (741)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555544443
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.65 E-value=0.00012 Score=71.71 Aligned_cols=257 Identities=18% Similarity=0.075 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 459 (741)
+-+++.-+....-.|+++.|.+-|+.++. +|.. .-.+..|-.-....|..+.|..+.+++....|.-+.++...-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34455566667778888888888877664 3331 112222222334668888888888888888888888777777777
Q ss_pred HHcCChHHHHHHHHHHHhh---CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004622 460 AALGESVEAIQDLSKALEF---EPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (741)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 531 (741)
+..|+++.|++..+..... .++-. -.+...+.... .-+...|...-.+++++.|+...+-..-+..++..|
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 7888888888887766543 22211 11222222222 235777888888888888888888788888888888
Q ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH---HHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ---VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (741)
+..++-.+++.+.+..|. +.++ .+|....--+.++.-+++ ...+.|++.+..+..+..-..-|++..|..--
T Consensus 278 ~~rKg~~ilE~aWK~ePH-P~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 278 NLRKGSKILETAWKAEPH-PDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred chhhhhhHHHHHHhcCCC-hHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 888888888888887765 3332 233333333334443433 34567888888888888888888888888888
Q ss_pred HHhhhhcCCchHHHHHHHHHHHHHhC-CCHHHHH-HHHHhh
Q 004622 609 SSGSRTMMPHLIWNLTRWRNLCFNAW-PFIRRRL-LCTRLL 647 (741)
Q Consensus 609 ~~al~~~~~~~~~~~~~~la~~~~~~-g~~~~A~-~~~~~~ 647 (741)
+.+....|.. .++..++.+-... |+-.+.. +.-+.+
T Consensus 353 eaa~r~~pre---s~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 353 EAAAREAPRE---SAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHhhhCchh---hHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 8888887763 3377778877554 8887777 444444
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.63 E-value=5.7e-06 Score=72.15 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=99.8
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004622 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (741)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 540 (741)
.=+++.......+.+...|. ..-.+.+|..+...|++.+|...|++++. ....++..+..++...+..+++..|...+
T Consensus 69 ~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 69 KLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred hcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33455555555555555553 34456677777777777777777777765 35566677777777777777777777777
Q ss_pred HHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 541 LKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 541 ~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
++..+.+|. .++....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|...+....
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777776654 3556666777777777777777777777777776 5666667777777777666665554443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.62 E-value=1e-06 Score=73.80 Aligned_cols=94 Identities=23% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 004622 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERG 490 (741)
Q Consensus 417 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la 490 (741)
+++.+|.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34444444444444444444444444432221 234444455555555555555555555444444 334444444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 004622 491 IVNFKFKDFNAAVEDLSACV 510 (741)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al 510 (741)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44455555555554444433
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.62 E-value=0.00018 Score=70.50 Aligned_cols=286 Identities=14% Similarity=0.036 Sum_probs=203.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHc
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAAL 462 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~ 462 (741)
..|.+....||-..|.+.-.+.-+.-..+ +-++..-++.-.-.|+++.|.+-|+..+. +|..- -.+..|-.--...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 45777778899999998888876543333 45556667777888999999999988764 33321 1222222333567
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---H--HHHHHHHHHHHcCCHH
Q 004622 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---DKENK---S--AYTYLGLALSSIGEYK 534 (741)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~---~--~~~~la~~~~~~~~~~ 534 (741)
|..+.|..+-+.+-...|.-+.++...-...+..|+|+.|+++.+..... .++.. . .+...+.... .-+..
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChH
Confidence 99999999999999999998888888888888999999999998876543 22221 1 2222222222 34578
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHh---
Q 004622 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG--- 611 (741)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a--- 611 (741)
.|...-.++.++.|+...+-..-+..++..|+..++-.+++.+.+..|. +.+ +.+|....--+.++.-++++
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHH
Confidence 8899999999999999998888999999999999999999999998886 443 33344433334455555555
Q ss_pred hhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCc--ccchhhHHHHhcC-CCchhHhhhHHHHHh
Q 004622 612 SRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS--FAGLTLMEILIPS-SRNIGAKDCIPRMYV 680 (741)
Q Consensus 612 l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 680 (741)
..+.|++ .+. ...++..-..-|++..|..--+......| ..+.-|+.+-... |+..++...+.+..+
T Consensus 322 ~slk~nn-aes-~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLKPNN-AES-SLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcCccc-hHH-HHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3456777 666 88888999999999988855555555555 3556666666655 888888777766654
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.61 E-value=6e-07 Score=76.23 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccC----ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChh---HHHHHHHHH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQSY----EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ---AYILKGCAF 113 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~ 113 (741)
.++-+.+++|+|++|++.|+.....-| ...+...++-+|++.|+|++|+..+++-++++|+++. +++.+|.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 345568999999999999999887542 3445789999999999999999999999999999987 899999999
Q ss_pred HHcCC---------------HHHHHHHHHHHHHhcCCChH
Q 004622 114 SALGR---------------KEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 114 ~~~g~---------------~~~A~~~~~~al~l~p~~~~ 138 (741)
+.+.. ...|...|++.+..-|+++-
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 99987 88999999999999999876
No 195
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.60 E-value=0.00024 Score=74.79 Aligned_cols=287 Identities=15% Similarity=0.100 Sum_probs=155.9
Q ss_pred hHHHHhhhhHHHhcCChhhHHHHHHHh------hcc----CCCCc-hhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHh
Q 004622 305 HDVHDKLSSDSASLNDSNTNSESYSKS------SIS----DNKSS-DSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRI 373 (741)
Q Consensus 305 ~~~~~~lg~~~~~~~~~~~A~~~~~~a------~~~----~p~~~-~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~ 373 (741)
.+.+...|..+-+..+|++|+++|++. +++ .|..+ ..-...+.-+...|+++.|++.+-.
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie--------- 731 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE--------- 731 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH---------
Confidence 345566788888889999999988763 222 12211 1223344445556666666663211
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (741)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 453 (741)
+...............+.+|+.+++.+-..... ...|-..+.-|...|+++.|.+.|.++-. ..
T Consensus 732 -------a~~~~kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~ 795 (1636)
T KOG3616|consen 732 -------ANCLIKAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADL--------FK 795 (1636)
T ss_pred -------hhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcch--------hH
Confidence 122233334445566777777776655433222 33455567777788888888877766421 12
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------------CHHHHHHHHHHH------HH--
Q 004622 454 RRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------------DFNAAVEDLSAC------VK-- 511 (741)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------------~~~~A~~~~~~a------l~-- 511 (741)
.-...|.+.|+|+.|.+.-.+... |.. ...|...+.-+-..| .++.|+..|.+. ++
T Consensus 796 dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH
Confidence 223456667777777766655432 322 223333343333333 444455555442 11
Q ss_pred --hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Ccc-----------------cHH--HHHHH------
Q 004622 512 --LDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRN-----------------FLE--AWGHL------ 557 (741)
Q Consensus 512 --~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~-----------------~~~--~~~~l------ 557 (741)
.+|+. ...+..+|.-+...|+...|...|-++-.. ... +.. +.+..
T Consensus 874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGG 953 (1636)
T ss_pred HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCc
Confidence 12332 245666777777778777777766554221 110 000 00100
Q ss_pred ---HHHHHHcCChHHHHHH------HHHHHh-----hCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 558 ---TQFYQDLANSEKALEC------LQQVLY-----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 558 ---a~~~~~~~~~~~A~~~------~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
..++.+.|-.+.|+.. |+-++. .....+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus 954 daavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 954 DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 1122333444444332 111111 122346778889999999999999999999999987655
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.59 E-value=2.1e-07 Score=70.56 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=48.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 004622 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 457 (741)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666665554
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=1.4e-06 Score=82.10 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ 457 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~ 457 (741)
.+..|.-++..|+|..|...|..-++..|++ +.++++||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6788888999999999999999999999886 6889999999999999999999999999887654 678999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 004622 458 ARAALGESVEAIQDLSKALEFEPNSADILHE 488 (741)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 488 (741)
+....|+.++|..+|+++++.+|....+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999987765443
No 198
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.55 E-value=5e-08 Score=93.28 Aligned_cols=102 Identities=21% Similarity=0.287 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004622 37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (741)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 115 (741)
...|+...+++..|+++.||+.|+.+|+++ +....+..|+.++++++.+..|+.+|..+++++|+..+.|-.+|.+...
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 456788999999999999999999999999 8888899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChH
Q 004622 116 LGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 116 ~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
+|++++|...+..+.+++-+-..
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHH
Confidence 99999999999999999865433
No 199
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=0.00059 Score=73.04 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=61.9
Q ss_pred HHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622 306 DVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL 385 (741)
Q Consensus 306 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (741)
..++.-|..+-..|+.+.|+..|..+-. +..+..+..-+|+.++|... .....+..+.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~i-------------A~esgd~AAcY 971 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARI-------------AEESGDKAACY 971 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHH-------------HHhcccHHHHH
Confidence 4677788888889999999999988765 33445556677887777662 12334456777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 386 SRGIAQVNEGKYASAISIFDQILK 409 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~ 409 (741)
.+|+.|.+.|++.+|+.+|.++-.
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 899999999999999999887643
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=3.1e-06 Score=72.00 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHH
Q 004622 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW 452 (741)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~ 452 (741)
.....++..|...+..|+|.+|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|+++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 446678889999999999999999999999988865 57888999999999999999999999999998875 467
Q ss_pred HHHHHHHHHcCC
Q 004622 453 KRRGQARAALGE 464 (741)
Q Consensus 453 ~~la~~~~~~~~ 464 (741)
+..|.+++.+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888888777654
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=2.5e-06 Score=80.44 Aligned_cols=102 Identities=20% Similarity=0.126 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 004622 452 WKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGL 525 (741)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~ 525 (741)
.+..|.-++..|+|..|...|...++.+|++ ++++++||.+++.+|+|++|...|..+++..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4555555666666666666666666666654 4556666666666666666666666666554443 355666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 004622 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEA 553 (741)
Q Consensus 526 ~~~~~~~~~~A~~~~~~al~~~~~~~~~ 553 (741)
+...+|+.++|...|+++++..|+...+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666666666666666666666655443
No 202
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=3.1e-06 Score=74.60 Aligned_cols=111 Identities=27% Similarity=0.333 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 456 (741)
+-+-.-|.-++..|+|.+|..-|..++...|..+ ..|.+.|.++++++.++.|+..+.++++++|.+..++...|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3344668889999999999999999999998753 56778899999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (741)
.+|..+..+++|+..|.+.++.+|....+.-....+
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999876655544443
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00022 Score=66.08 Aligned_cols=225 Identities=15% Similarity=0.112 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------H-HHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------------------P-EALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~~~~~~A~~~~~~~ 441 (741)
...|...-.++.+...+++|...+...-+.|..+ | ......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3455555566667777777776665554433211 1 12233455556667666666555444
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Q 004622 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAY 520 (741)
Q Consensus 442 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 520 (741)
...- ..+-.........+..++.+++=+ ..+.+.+..++...|.|.-.+..+.+.++.+ |.++...
T Consensus 149 ~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 149 KTVV-------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred HHHH-------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 3211 111222222333355555555533 4567788889999999999999999999987 6677888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 004622 521 TYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (741)
Q Consensus 521 ~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 594 (741)
..+|.+..+.|+.+.|..+|+++-+.. .....+..+.+.++.-.+++..|...+.+++..+|.++.+-.+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 889999999999999999998655432 22345667788888999999999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHhhhhcCCc
Q 004622 595 LHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
....|+..+|++.++.++...|..
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999876
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.45 E-value=1.1e-06 Score=67.67 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=24.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 004622 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (741)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 550 (741)
+|...+++++|++++++++..+|+++..+..+|.++..+|++.+|+..++++++..|++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 33344444444444444444444444444444444444444444444444444444433
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.42 E-value=5.2e-05 Score=66.34 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=105.7
Q ss_pred HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVED 505 (741)
Q Consensus 427 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~ 505 (741)
+.=+++....-..+.+...|.. .-.+.+|......|++.+|...|++++. +.-.++..+..+++..+..+++..|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 3334555555555555555543 3355677777788888888888877775 4556777777888888888888888888
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004622 506 LSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (741)
Q Consensus 506 ~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 578 (741)
+++..+.+|. .+.....+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+..+|..-+....
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8887777664 3566677788888888888888888888887776 6666677777778887777665555444
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.36 E-value=1.5e-06 Score=88.08 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=62.8
Q ss_pred CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEHA 133 (741)
Q Consensus 67 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~al~l~ 133 (741)
+.+..++|+|.+|.++|+|++|+..|+++|+++|++..+ |+.+|.+|..+|++++|+.+|++|+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456679999999999999999999999999999999865 9999999999999999999999999983
No 207
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.34 E-value=5.7e-06 Score=72.58 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcc-CChhhHHHHHHHHHhh----------hcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--
Q 004622 52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQL----------ELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-- 118 (741)
Q Consensus 52 ~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-- 118 (741)
|+.|.+.++.....+ .++..+++-|.+++.+ ..+++|+.-++.||.++|+..+|++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 678999999998888 7788888888888776 446789999999999999999999999999988765
Q ss_pred ---------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004622 119 ---------KEEALSVWEKGYEHALHQSADLKQFLELEEL 149 (741)
Q Consensus 119 ---------~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 149 (741)
++.|...|++|...+|+|.. .+..|.....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~-Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL-YRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH-HHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHh
Confidence 77889999999999999999 7777765543
No 208
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=4.7e-05 Score=76.46 Aligned_cols=288 Identities=10% Similarity=0.037 Sum_probs=193.9
Q ss_pred HhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHH-HHchhcHHHHHHHHHHhHHH--HHHHhh-----ccCCcc
Q 004622 309 DKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKL-SFKWDMLKETSNEAKRNKKF--CVTRIS-----KSKSIS 380 (741)
Q Consensus 309 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~a~~~~~~~~~~--~~~~~~-----~~~~~~ 380 (741)
.-.+...+..+.|+..++.+...-.++..+..++.+.+.+ |++.|..+...- .+....+ +..... -+....
T Consensus 21 ~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~l-l~el~aL~~~~~~~~~~~~gld~~~~ 99 (696)
T KOG2471|consen 21 LCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVL-LKELEALTADADAPGDVSSGLSLKQG 99 (696)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHH-HHHHHHHHHhhccccchhcchhhhcc
Confidence 3346667788999999999998888776666655555544 444444332211 1111100 111110 011222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CC--C
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQS------NP--S 447 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~--~ 447 (741)
.-..+..|.+++....+.+|++.....+..-... ...-+..-..+....+-++|+.++.-.-++ .+ +
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3467788888888899999998877766532211 122233444555566667776654432211 11 0
Q ss_pred c-------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004622 448 A-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (741)
Q Consensus 448 ~-------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 502 (741)
+ ..+.......+.+..+...+....+.++.+..+.+......+..++..|++.+|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 0 012333344556677777888888888888888899999999999999999999
Q ss_pred HHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--------c---------ccHHHHH
Q 004622 503 VEDLSAC-VKLDKE--------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-D--------R---------NFLEAWG 555 (741)
Q Consensus 503 ~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--------~---------~~~~~~~ 555 (741)
.+.+... +...|. ....|.++|.++++.|.|.-+..+|.++++. + | ....+++
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 9988664 222332 2245789999999999999999999999961 1 1 1356889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 004622 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (741)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (741)
+.|..|...|+.-.|.++|.++......+|..|..+|.+...
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 209
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.26 E-value=0.0083 Score=61.80 Aligned_cols=116 Identities=11% Similarity=-0.101 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH-HHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 530 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (741)
..-...|...|.++-+.......++..-|.+ |...++.+-|...|+-.+...++.+..-......+...|+-..|...|
T Consensus 379 ~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 379 AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHH
Confidence 3334555556666554332222333322222 456788999999999999999999888888888889999999999999
Q ss_pred HHhhhh--cCCchHHHHHHHHHHHHHhCCCHHHHHHHHHh
Q 004622 609 SSGSRT--MMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRL 646 (741)
Q Consensus 609 ~~al~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 646 (741)
++++.. .|+. ...+|...-..-...|+....+...+.
T Consensus 459 Er~l~s~l~~~k-s~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 459 ERVLTSVLSADK-SKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHhccCChhh-hHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999876 4444 334477777778888998888755444
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00048 Score=63.90 Aligned_cols=186 Identities=11% Similarity=0.104 Sum_probs=134.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 465 (741)
.-|.+....|+..+.+.-+...... ..............+..++.+++-+ ..+.+.+..++...|.|
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy 193 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEY 193 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhh
Confidence 4455556667777666655544321 1111222222233355566665543 24566777888888888
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 004622 466 VEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEE 538 (741)
Q Consensus 466 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~ 538 (741)
.-.+..+.+.++.+ |.++.....+|.+.++.|+.+.|..+++..-+.. .....+..+.+.++...+++..|..
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHH
Confidence 88889999988887 5667788888999999999988888888654432 2334566777888888889999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (741)
Q Consensus 539 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 584 (741)
.+.+++..+|.++.+.++.|.|+.-.|+..+|++.++.++...|..
T Consensus 274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999888863
No 211
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00074 Score=62.08 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----CCcH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG 449 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~~~~ 449 (741)
...+..-+..+...++|++|..++.++.+...++ ..++-..+........+.++..+++++..+. |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4456666777778888999988888888655543 2344445555556666777777777765542 2222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004622 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSA 508 (741)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (741)
..-...+--.....++++|++.|++++.+...+ .+.+...++++.+...|.+|-..+.+
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 222222222334445555555555555443221 12333444455555555554444443
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.21 E-value=3.7e-05 Score=62.91 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc----HHHHHHHHHHHH
Q 004622 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLH 596 (741)
Q Consensus 521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 596 (741)
-..|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456677777888888888888888888888888888888888888888888888888775432 345777888888
Q ss_pred HCCChHHHHHHHHHhhhhcCC
Q 004622 597 GLGQHKKAIKDLSSGSRTMMP 617 (741)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~~~ 617 (741)
..|+.+.|...|+.+-++...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888888888888776543
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.19 E-value=4.8e-06 Score=65.00 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
...++.++|.+|..+|++++|+.+|++++++. |....++.++|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455555555555566666665555555431 112344556666666666666666666666544
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=7.1e-06 Score=83.27 Aligned_cols=70 Identities=27% Similarity=0.232 Sum_probs=64.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA---WGHLTQFYQDLANSEKALECLQQVLYID 581 (741)
Q Consensus 512 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (741)
.+|+++.+++++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478889999999999999999999999999999999998854 9999999999999999999999999873
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0004 Score=63.30 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=47.6
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH-------HH
Q 004622 522 YLGLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KA 587 (741)
Q Consensus 522 ~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~ 587 (741)
.+|.+|... .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|++.....-+++ ..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444432 55555555555554443221 12334444445555666666666666554333321 22
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622 588 YHLRGLLLHGLGQHKKAIKDLSSGSRTMMP 617 (741)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 617 (741)
++.-|.+++...+.-.+...+++..+++|.
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 344455555555555555556666566554
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.14 E-value=5.3e-06 Score=64.75 Aligned_cols=64 Identities=28% Similarity=0.417 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (741)
Q Consensus 517 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (741)
..++.++|.+|..+|++++|+.+|++++++. |....++.++|.++...|++++|+.++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666666666666666665441 112445666666666666666666666666654
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.14 E-value=0.013 Score=59.19 Aligned_cols=126 Identities=7% Similarity=-0.091 Sum_probs=87.3
Q ss_pred hhhhHHHhcCChhhHHHHHHHhhccCCCCchhHH------HHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHH
Q 004622 310 KLSSDSASLNDSNTNSESYSKSSISDNKSSDSTE------SRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383 (741)
Q Consensus 310 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (741)
-.|..+-+++++.+|.+.|.+......+.+..+. .+..+| -..+.+.... .........+.....
T Consensus 11 ~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~--------~l~~l~~~~~~s~~l 81 (549)
T PF07079_consen 11 FQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEK--------QLMELRQQFGKSAYL 81 (549)
T ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHH--------HHHHHHHhcCCchHH
Confidence 3588899999999999999999877655543222 222333 2333332222 455556667777888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---------------PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 444 (741)
.+..|...++.+.|.+|++.+......-... ...-...+.++...|++.++...+++.+..
T Consensus 82 ~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 82 PLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8899999999999999999887665541111 111235688999999999999999887753
No 218
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.08 E-value=5.5e-05 Score=66.53 Aligned_cols=87 Identities=26% Similarity=0.332 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Q 004622 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-- 464 (741)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-- 464 (741)
|+.|.+.++.....+|.+++.++.-|.++..+.+ +++|+.-|+.++.++|+..+++..+|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5677888888888888888888888877776643 3456666777777777777777777777765542
Q ss_pred ---------hHHHHHHHHHHHhhCCCCH
Q 004622 465 ---------SVEAIQDLSKALEFEPNSA 483 (741)
Q Consensus 465 ---------~~~A~~~~~~al~~~p~~~ 483 (741)
|++|..+|+++...+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3444444444444555443
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00061 Score=65.45 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=120.9
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHH
Q 004622 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNF 494 (741)
Q Consensus 419 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~ 494 (741)
..-+.+....|+..+|.....+.++..|.+.-++..--.+++..|+...-...+++.+-. +|+- ..+.-.++..+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 334555667788888888888888888888888777778888888888888888888776 5544 344455667778
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHHH
Q 004622 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA 570 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A 570 (741)
..|-|++|.+..+++++++|.+..+....+.++...|++.++.+...+.-..-... ..-|...+.++...+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 88889999999999999999888888888888888899888888776643322211 12344567777778888888
Q ss_pred HHHHHHHH
Q 004622 571 LECLQQVL 578 (741)
Q Consensus 571 ~~~~~~al 578 (741)
+..|.+-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 88887655
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00037 Score=66.89 Aligned_cols=158 Identities=14% Similarity=0.050 Sum_probs=133.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHc
Q 004622 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-DKEN---KSAYTYLGLALSSI 530 (741)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~ 530 (741)
-+.+....|++.+|....++.++..|.+.-++..--..++.+|+.......+++.+.. +|+- ..+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455667899999999999999999999988888888999999999999999999877 6665 34455567788889
Q ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHCCChHHHHH
Q 004622 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIK 606 (741)
Q Consensus 531 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~ 606 (741)
|-|++|.+...++++++|.+..+...++.++...|++.++.++..+--...... ..-|..-|.++...+.|+.|++
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999999999999999999999999999999999999988765433221 2236667888888999999999
Q ss_pred HHHHhh
Q 004622 607 DLSSGS 612 (741)
Q Consensus 607 ~~~~al 612 (741)
.|.+-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998764
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=7.7e-06 Score=51.26 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=30.6
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 004622 92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (741)
Q Consensus 92 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~ 123 (741)
|+++|+++|+++.+++.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999996
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.00 E-value=0.012 Score=63.15 Aligned_cols=115 Identities=19% Similarity=0.070 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHHHHHH
Q 004622 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALEC 573 (741)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~ 573 (741)
..+.|.+++....+..|+....++..|+++...|+.++|+..|++++.....- .-.++.++.++..+.+|++|..+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 44555566666666666666556666666666666666666666555322221 12445556666666666666666
Q ss_pred HHHHHhhCccc-HHHHHHHHHHHHHCCCh-------HHHHHHHHHhh
Q 004622 574 LQQVLYIDKRF-SKAYHLRGLLLHGLGQH-------KKAIKDLSSGS 612 (741)
Q Consensus 574 ~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al 612 (741)
+.+..+.+.-. .-..+..|.++...|+. ++|.+.|.++-
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66655543322 22334455555555555 55555555543
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=1.7e-05 Score=53.48 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004622 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (741)
Q Consensus 70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~ 111 (741)
..+..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345666777777777777777777777777777777766664
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.95 E-value=0.0067 Score=61.44 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=79.0
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cccHHHHHHHHHH-
Q 004622 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTE- 440 (741)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~- 440 (741)
...++....-.+++....+-..|....+|+.-+.+.+.+-.. .++.+.+.+.+|.++.+ .|+.++|+..+..
T Consensus 129 i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~ 208 (374)
T PF13281_consen 129 IRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV 208 (374)
T ss_pred HHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 333444444455566666666777778888777777766554 34456667777777777 7788888888777
Q ss_pred HHHhCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622 441 AIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (741)
Q Consensus 441 ~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (741)
.....+.+++.+..+|.+|-.. ...++|+..|.++.+..|+ ...-.+++.++...|
T Consensus 209 l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 209 LESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAG 273 (374)
T ss_pred HhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcC
Confidence 4445566777777777776432 1255666666666666642 233334444444444
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0011 Score=60.58 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------H
Q 004622 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------K 517 (741)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~ 517 (741)
.+...+.+|. .+++++|+.++++++++..+.. ..+..+|.+|..- .++++|+.+|+++-+..... .
T Consensus 76 ~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3444444443 3466777777777766654332 2344677777654 77778888887776653322 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccH
Q 004622 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (741)
Q Consensus 518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 585 (741)
..+...+..-...++|.+|+..|+++....-+++ ..++.-|.+++...+.-.+...+++..+++|...
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 3445556666677888888888887766554442 2345567777777777777777777777888543
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.93 E-value=0.0013 Score=67.25 Aligned_cols=188 Identities=13% Similarity=0.033 Sum_probs=110.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 004622 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (741)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 467 (741)
........+.+.-++.-++|++++|+.+.+|..++.- ......+|.++++++++...... .........|..-+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~e 248 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchhh
Confidence 3344667899999999999999999999999888753 23346788888888876432211 01111111111111
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 468 AIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (741)
Q Consensus 468 A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 543 (741)
.....+. ...+...+|.+..+.|+.++|++.++..++.+|. +..++.++..++...+.|.++...+.+.
T Consensus 249 -------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 249 -------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred -------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1111111 1334556777777777777777777777766654 3356677777777777777777776665
Q ss_pred HHh-CcccHHHHHHHHHHHHHc-CC---------------hHHHHHHHHHHHhhCcccHHHH
Q 004622 544 IQL-DRNFLEAWGHLTQFYQDL-AN---------------SEKALECLQQVLYIDKRFSKAY 588 (741)
Q Consensus 544 l~~-~~~~~~~~~~la~~~~~~-~~---------------~~~A~~~~~~al~~~p~~~~~~ 588 (741)
-++ -|.++...+.-+.+..+. ++ -..|++.+.+|++.+|.-+..+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 433 244444444433332221 11 1245677777877777655443
No 227
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.037 Score=56.40 Aligned_cols=206 Identities=14% Similarity=0.071 Sum_probs=134.0
Q ss_pred HcccHHHHHHHHHHHHHhCCC------cH--------HHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------C
Q 004622 427 FQRELEAAISDFTEAIQSNPS------AG--------EAWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S 482 (741)
Q Consensus 427 ~~~~~~~A~~~~~~~l~~~~~------~~--------~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~ 482 (741)
..|-+++|.++-++++..... .. ..+-.++.|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 446677787777777654211 11 12345566667789999988888777654 343 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------
Q 004622 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--------- 550 (741)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------- 550 (741)
+.+...+|......+.++.|...|..+.+.... +. ....++|..|...|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 456777888888888899999998888876433 22 3455678888887775544444333 33332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc---CCchH
Q 004622 551 -LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM---MPHLI 620 (741)
Q Consensus 551 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~ 620 (741)
..+++..|...+.++++.+|...+.+.+++... ..-.+..+|.+....|+..++.+...-++.+. |+. +
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di-~ 522 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI-P 522 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc-h
Confidence 346667777788888999999888888876521 12345667888888888888888777776543 332 2
Q ss_pred HHH--HHHHHHHHHhCCC
Q 004622 621 WNL--TRWRNLCFNAWPF 636 (741)
Q Consensus 621 ~~~--~~~la~~~~~~g~ 636 (741)
..+ ...+-.++...|+
T Consensus 523 vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 523 VQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 221 2234456666666
No 228
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.91 E-value=0.014 Score=62.03 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 004622 485 ILHERGIVNFKFKDFNAAVEDLSAC------VKL----DKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQL------- 546 (741)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 546 (741)
.|-.-|.++.+..++++|+++|++. +++ .|... ..-...|.-+...|+++.|+..|-.+-..
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 3445567777777777777766552 222 23222 22233455555666666666555432110
Q ss_pred -----------------Ccc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHH
Q 004622 547 -----------------DRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 547 -----------------~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (741)
+.. -...|-.++.-|...|+|+.|.+.|.++-. ...-...|-+.|++.+|.+.-
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHH
Confidence 000 012334566677777888888777766421 222334566777777776665
Q ss_pred HHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHH
Q 004622 609 SSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCT 644 (741)
Q Consensus 609 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 644 (741)
.++.. |+. ...+|...+.-+...|+|.+|...|
T Consensus 815 ~e~~~--~e~-t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECHG--PEA-TISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhcC--chh-HHHHHHHhHHhHHhhcchhhhhhee
Confidence 55532 333 2233555566666666666665433
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.88 E-value=0.00094 Score=68.23 Aligned_cols=184 Identities=16% Similarity=0.098 Sum_probs=127.7
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (741)
Q Consensus 422 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 501 (741)
..-..+..+.+.-++..+++++++|+.++++..+|.- ......+|..+++++++...... .........|..-
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~- 247 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW- 247 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh-
Confidence 3334566778888999999999999999999888753 23447889999999887653221 1111111112111
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622 502 AVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQV 577 (741)
Q Consensus 502 A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (741)
......+.+ ..+...+|.|..++|+.++|++.++..++..|. +..+..+|..++...+.|.++...+.+.
T Consensus 248 ------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 248 ------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 111111122 355677999999999999999999999988775 4568999999999999999999999886
Q ss_pred Hhh-CcccHHHHHHHHHHHHH-CCC---------------hHHHHHHHHHhhhhcCCc
Q 004622 578 LYI-DKRFSKAYHLRGLLLHG-LGQ---------------HKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 578 l~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~ 618 (741)
-++ -|+.+...+..|.+..+ .++ -..|.+.+.+|++.+|--
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 443 35666666665554433 111 234778999999998765
No 230
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.3e-05 Score=69.10 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 464 (741)
-..|..++....|..|+.+|.+++..+|..+..+.+.+.|+++..+++.+.....+++++.|+....++.+|.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34566777777888888888888888888778888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhh
Q 004622 465 SVEAIQDLSKALEF 478 (741)
Q Consensus 465 ~~~A~~~~~~al~~ 478 (741)
+++|+..+.++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888887554
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00056 Score=68.10 Aligned_cols=131 Identities=10% Similarity=0.001 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004622 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (741)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 531 (741)
..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|.++|+.+++..|.+...|......+...+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 3333344444444455555555543333344444444444333 233333555555555555555554444444445555
Q ss_pred CHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622 532 EYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (741)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 583 (741)
+.+.|...|++++..-|... .+|......-...|+.+...++.+++.+..|.
T Consensus 85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 55555555555544433322 34444455555555555555555555555544
No 232
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.85 E-value=2.8e-05 Score=49.14 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 135 (741)
.+++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 233
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.0006 Score=67.89 Aligned_cols=136 Identities=15% Similarity=0.035 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 004622 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (741)
Q Consensus 417 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (741)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777778888888888886656667788888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 004622 496 FKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (741)
Q Consensus 496 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 552 (741)
.|+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+..|+...
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888888888888887766544 56777777777888888888888888888777443
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.82 E-value=3.3e-05 Score=48.79 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (741)
Q Consensus 70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 102 (741)
..|+++|.+|..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 568999999999999999999999999999975
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.78 E-value=0.021 Score=59.66 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc------
Q 004622 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RN------ 549 (741)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~------ 549 (741)
.....+...+.+..+.|.++.|...+.++...++. .+.+.+..+.++...|+..+|+..++..+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34566777777777777777777777777665421 35566666777777777777777777666511 00
Q ss_pred ---------------------------cHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Q 004622 550 ---------------------------FLEAWGHLTQFYQDL------ANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (741)
Q Consensus 550 ---------------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 596 (741)
...++..+|...... +..++++..|.++++..|....+|+..|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 123445555555555 66777777777777777777777777776655
Q ss_pred H
Q 004622 597 G 597 (741)
Q Consensus 597 ~ 597 (741)
.
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 4
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0075 Score=55.71 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622 416 EALIGRGTARAFQRELEAAISDFTEAIQS 444 (741)
Q Consensus 416 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 444 (741)
..|..-+.+|....++++|..++.++.+-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 34445555555666666666666666543
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.74 E-value=7.4e-05 Score=47.17 Aligned_cols=33 Identities=33% Similarity=0.478 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 136 (741)
.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666654
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.73 E-value=8.4e-05 Score=50.10 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004622 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRG 422 (741)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 422 (741)
.++.+|..+...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555555554
No 239
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.70 E-value=0.088 Score=54.64 Aligned_cols=217 Identities=11% Similarity=-0.009 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcC-
Q 004622 400 AISIFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNP-SAGEAWKRRGQARAALG- 463 (741)
Q Consensus 400 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~- 463 (741)
-.-.|++++..-+-.+++|+..+..+...++ .+++..+|++++..-. .+...++.++..-...-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3345777887778888888887777776666 7788888998886432 23344445544433322
Q ss_pred --ChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHH
Q 004622 464 --ESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEA 539 (741)
Q Consensus 464 --~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~ 539 (741)
+++.....+++++.+...++ -++..+-..-.+..-...|...|.++-+..-....++..-|. -|...++..-|..+
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrI 423 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRI 423 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHH
Confidence 36777788888887654443 345555556666667788999999987754333344433333 35568999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--Ccc-cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcC
Q 004622 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMM 616 (741)
Q Consensus 540 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 616 (741)
|+-.++..++.+..-......+...++-..|...|++++.. .|+ ...+|..+-..-..-|+....++.=++-....|
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999999998888899999999999999999999976 433 357788888888888999988888777665555
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00034 Score=64.16 Aligned_cols=120 Identities=16% Similarity=0.063 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 004622 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (741)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 562 (741)
..++...|+-+++.|+|.+|...|+.++..- -.+..+.+-.+ .+.++++......+.++++|+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l----------~~L~lkEkP~e------~eW~eLdk~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICL----------RNLQLKEKPGE------PEWLELDKMITPLLLNYCQCLL 241 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHH----------HHHHhccCCCC------hHHHHHHHhhhHHHHhHHHHHh
Confidence 5577778888888888888888888776421 00000000000 0112223333557788888899
Q ss_pred HcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 563 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
..|+|-++++.....+..+|.+..+++..|.++...-+..+|...|.++++++|.-
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 99999999999999999999999999999999988889999999999999988875
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.68 E-value=0.034 Score=58.04 Aligned_cols=120 Identities=17% Similarity=0.264 Sum_probs=90.4
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC----
Q 004622 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKL-DKE---- 515 (741)
Q Consensus 445 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~---- 515 (741)
.......+...+.+....|.++.|...+.++....+. .+.+.+..+.++...|+..+|+..++..+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3345667888888888888888888888888776521 4677778888888888888888888877761 110
Q ss_pred ----------------------C-------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 004622 516 ----------------------N-------KSAYTYLGLALSSI------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (741)
Q Consensus 516 ----------------------~-------~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 560 (741)
. ..++..+|...... +..++++..|.++++.+|....+|+.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 13455566666666 888999999999999999999999998887
Q ss_pred HHHc
Q 004622 561 YQDL 564 (741)
Q Consensus 561 ~~~~ 564 (741)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
No 242
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.00011 Score=74.49 Aligned_cols=110 Identities=22% Similarity=0.070 Sum_probs=95.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhh---hcHHHHHHHHHHHHHhCCCChh
Q 004622 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQ 104 (741)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~ 104 (741)
...+++....-+.+++..|..+.+..||..|.+++... ....++.|||.++++. |+.-.|+.+|-.++++||...+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 34445545555688999999999999999999999877 6778899999999987 7888999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
|+++++.++..++++.+|+.....+....|.+..
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 9999999999999999999988887777776655
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.65 E-value=0.0077 Score=60.99 Aligned_cols=181 Identities=14% Similarity=-0.003 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCChHHHHHHHHH-HHhhCCCCHHHH
Q 004622 415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA---LGESVEAIQDLSK-ALEFEPNSADIL 486 (741)
Q Consensus 415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~ 486 (741)
+++...+-.+|....+|+.-++..+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 566777778888999999888888877665 44566677788888888 8899999999988 445566778888
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 004622 487 HERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557 (741)
Q Consensus 487 ~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 557 (741)
..+|.+|-.. ...++|+..|.++.+.+|+. ..-.+++.++...|...+...-+++.. ..+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l 289 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG----------VKL 289 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH----------HHH
Confidence 8888887532 12445555555555555322 222223333333332111111111110 001
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 558 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
.....+.|..+ .-.+-+.+..++.+..-.|++++|++++++++...|+.
T Consensus 290 ~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 290 SSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11111111100 11223444556666677778888888888877777665
No 244
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0093 Score=55.72 Aligned_cols=204 Identities=17% Similarity=0.202 Sum_probs=155.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH-HHH
Q 004622 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-~A~ 469 (741)
.....-..|+.+-..++..+|.+..+|...-.++..++ +..+-++++...++.+|.+..+|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34456678889999999999999988888777776654 6778889999999999999999999988888889888 888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHH
Q 004622 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG-----EYKKAEEAHLKA 543 (741)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~-----~~~~A~~~~~~a 543 (741)
+..+.++..+..+-.+|...-.+....+.|+.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~ 213 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK 213 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877766666543222211 11 234456677888
Q ss_pred HHhCcccHHHHHHHHHHHHH-cC--ChHHHHHHHHHHH-hhCcccHHHHHHHHHHH
Q 004622 544 IQLDRNFLEAWGHLTQFYQD-LA--NSEKALECLQQVL-YIDKRFSKAYHLRGLLL 595 (741)
Q Consensus 544 l~~~~~~~~~~~~la~~~~~-~~--~~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 595 (741)
+...|++..+|..|.-++.. .| .+.+-.......+ ......|..+-.+..+|
T Consensus 214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 88999999999999888876 44 2444555555544 22334455555555555
No 245
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.60 E-value=0.00011 Score=74.60 Aligned_cols=107 Identities=24% Similarity=0.352 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 465 (741)
..+...+..++|+.|+..|.++++++|+++..+...+..+.+.+++..|+..+.++++.+|....+|+..|.+....+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 55677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 004622 466 VEAIQDLSKALEFEPNSADILHERGIV 492 (741)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (741)
.+|...|+....+.|+++.+...+..+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 999999999999999998887666554
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0004 Score=66.79 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=88.1
Q ss_pred cCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCc
Q 004622 300 QTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSI 379 (741)
Q Consensus 300 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 379 (741)
...+.+..++.-|+.+|+.++|..|+..|.+.+.....|+..
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-------------------------------------- 117 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-------------------------------------- 117 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH--------------------------------------
Confidence 334578889999999999999999999999999876555441
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 004622 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (741)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 446 (741)
++..|.++|-+.+..|+|..|+..+.+++..+|.+..+++.-+.|++.+.++++|..+++..+..+.
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 2334556777778888899999999999999999999999999999999999999988888766543
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.58 E-value=0.00015 Score=45.66 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (741)
Q Consensus 70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 102 (741)
..++.+|.++.++|++++|+..+++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 568899999999999999999999999999986
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.55 E-value=0.0039 Score=64.56 Aligned_cols=111 Identities=15% Similarity=0.011 Sum_probs=90.1
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 004622 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (741)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 449 (741)
...+..+.+...+..-+..+...|+..+|..++..++-..|... .++..+|.++.+.|...+|--.+..++...|...
T Consensus 204 ~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t 283 (886)
T KOG4507|consen 204 EGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFT 283 (886)
T ss_pred HhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence 33445556666666556666678999999999999998877653 5778899999999999999999988888777766
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (741)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (741)
.-++.++.++...+++......|..+.+..|..
T Consensus 284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred ccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 678899999999999999999999888888753
No 249
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.54 E-value=8.9e-05 Score=46.44 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=15.4
Q ss_pred HHHHHhhCcccHHHHHHHHHHHHHCCChHHH
Q 004622 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604 (741)
Q Consensus 574 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 604 (741)
|+++++++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444455555555555555555555555444
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.011 Score=56.82 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=102.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH--H
Q 004622 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG--Q 457 (741)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la--~ 457 (741)
..+.-+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+...-....+. ......+ .
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ 211 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIE 211 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHH
Confidence 344556677788899999999999999999999999999999999999999999988776643222221 1111111 2
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 004622 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG 531 (741)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~ 531 (741)
.+.+.....+. ..+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+.. +..+...+-.++...|
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 22222222221 2345556678888888888888888888888888888887776443 3344444444444444
No 251
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.52 E-value=0.27 Score=55.27 Aligned_cols=290 Identities=11% Similarity=0.003 Sum_probs=188.3
Q ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cH
Q 004622 380 SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AG 449 (741)
Q Consensus 380 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~ 449 (741)
.+.+.+.+|.+++ ...+++.|..++++++.....+ ..+.+.++.++.+.+... |...+++.++...+ ..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3457889999988 6899999999999998876432 234567788888888777 99999999886544 22
Q ss_pred H-HHHHH--HHHHHHcCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 004622 450 E-AWKRR--GQARAALGESVEAIQDLSKALEFE--PNSADI----LHERGIVNFKFKDFNAAVEDLSACVKLDK------ 514 (741)
Q Consensus 450 ~-~~~~l--a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p------ 514 (741)
. ..+.+ .......+++..|++.++...... +.++.+ ....+.+....+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 2 12222 333333479999999999998876 344433 33446677778888889988888854321
Q ss_pred C----CHHHHHHH--HHHHHHcCCHHHHHHHHHHHH---Hh---Cc---c---c-----------------H--------
Q 004622 515 E----NKSAYTYL--GLALSSIGEYKKAEEAHLKAI---QL---DR---N---F-----------------L-------- 551 (741)
Q Consensus 515 ~----~~~~~~~l--a~~~~~~~~~~~A~~~~~~al---~~---~~---~---~-----------------~-------- 551 (741)
+ ...++..+ -.++...|+++.+...+++.- .. .+ . + +
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 1 12333333 234566788777766554432 11 11 0 0 0
Q ss_pred -----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc--------------------------HHHHHHHHHHHHHCCC
Q 004622 552 -----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--------------------------SKAYHLRGLLLHGLGQ 600 (741)
Q Consensus 552 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------~~~~~~la~~~~~~g~ 600 (741)
-++..-|......+..++|.++++++++.-.+. ....+..+.+..-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 122333455566677778888888887541110 1235667888888999
Q ss_pred hHHHHHHHHHhhhhc---CC----chHHHHHHHHHHHHHhCCCHHHHHHHHH--------hhccCCc------ccchhhH
Q 004622 601 HKKAIKDLSSGSRTM---MP----HLIWNLTRWRNLCFNAWPFIRRRLLCTR--------LLKSTVS------FAGLTLM 659 (741)
Q Consensus 601 ~~~A~~~~~~al~~~---~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~~~~~~~------~~~~~l~ 659 (741)
+..|...++.+.... |. .....+++..|..+...|+.+.|...|. ......+ .+..++.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 999999988876542 22 1223448889999999999999998886 3333333 3556666
Q ss_pred HHHhcCCCchh
Q 004622 660 EILIPSSRNIG 670 (741)
Q Consensus 660 ~~~~~~g~~~~ 670 (741)
-++...+.-.+
T Consensus 457 ~I~~~~~~~~~ 467 (608)
T PF10345_consen 457 IILQYESSRDD 467 (608)
T ss_pred HHhHhhcccch
Confidence 66666655433
No 252
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.081 Score=49.71 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=60.6
Q ss_pred CChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhc-HHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCH
Q 004622 319 NDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM-LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKY 397 (741)
Q Consensus 319 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 397 (741)
..-..|+.+-..++..+|.+-+++...-.++..++. ..+.++ .+..+...+|.+..+|...-.+....|++
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~--------~l~eI~e~npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELE--------YLDEIIEDNPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence 344455555666666666655555555444433322 222222 44444455555555555444444444544
Q ss_pred H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 004622 398 A-SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (741)
Q Consensus 398 ~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 448 (741)
. .-+++.+.++..+.++..+|...-.+....+.++.-+.+....++.+-.+
T Consensus 129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N 180 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN 180 (318)
T ss_pred ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 4 44455555555555555555555555555555555555555555444333
No 253
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.081 Score=58.82 Aligned_cols=144 Identities=21% Similarity=0.103 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 004622 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (741)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 459 (741)
.+..|..+|.+.+..|...+|++.|-++ ++|..|.....+..+.|.|++-+.++.-+.+... .+.+-..+..+|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence 3455666666666666666666665443 3355555555666666666666666555544321 111222233334
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (741)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 539 (741)
...++..+-.+.+ ..|+.+. ....|.-++..|.|+.|.-+|.. ..-|..++..+..+|+|..|...
T Consensus 1177 Akt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332222 2333322 33455556666666666555543 23345566666677777777766
Q ss_pred HHHH
Q 004622 540 HLKA 543 (741)
Q Consensus 540 ~~~a 543 (741)
.+++
T Consensus 1243 aRKA 1246 (1666)
T KOG0985|consen 1243 ARKA 1246 (1666)
T ss_pred hhhc
Confidence 6655
No 254
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.2 Score=51.37 Aligned_cols=354 Identities=12% Similarity=0.033 Sum_probs=203.4
Q ss_pred hhhHHHhcC-ChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHh-hccCCc---cH
Q 004622 311 LSSDSASLN-DSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRI-SKSKSI---SV 381 (741)
Q Consensus 311 lg~~~~~~~-~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~---~~ 381 (741)
++..+.... .+..|...+.+++++....+- ....++.+..-..++..|.+. +..- ...++. ..
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el--------Lavga~sAd~~~~~yl 165 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL--------LAVGAESADHICFPYL 165 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH--------HhccccccchhhhHHH
Confidence 344444333 667788888888888766553 344566666666666666662 1111 111111 11
Q ss_pred HHHH--HHHHHHHHcCCHH---HHHHHHHHHHHhCCCCH-------HHHHHHHHHH-HHcccHHHHHHHHHHH---HHh-
Q 004622 382 DFRL--SRGIAQVNEGKYA---SAISIFDQILKEDPMYP-------EALIGRGTAR-AFQRELEAAISDFTEA---IQS- 444 (741)
Q Consensus 382 ~~~~--~~a~~~~~~g~~~---~A~~~~~~al~~~p~~~-------~~~~~la~~~-~~~~~~~~A~~~~~~~---l~~- 444 (741)
..++ ..+..+....+.. .+...+.++.+....++ ..+..+-.+| ...|+...+...+++. +..
T Consensus 166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence 2222 3333444444433 44444444444333332 2233333333 3456666555555433 221
Q ss_pred CCC------------cH-----------HHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCC------CHH--------H
Q 004622 445 NPS------------AG-----------EAWKRRGQA--RAALGESVEAIQDLSKALEFEPN------SAD--------I 485 (741)
Q Consensus 445 ~~~------------~~-----------~~~~~la~~--~~~~~~~~~A~~~~~~al~~~p~------~~~--------~ 485 (741)
.+. .+ .++..+-.+ -+..|-+++|.++-++++..... ... .
T Consensus 246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 110 00 111111111 12346678888888877765311 112 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-c--HH
Q 004622 486 LHERGIVNFKFKDFNAAVEDLSACVKL---DKE-------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-F--LE 552 (741)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~ 552 (741)
+-.+..+-.-.|++.+|++....+.+. .|. .+..++.+|......+.++.|...|..+.+.... + ..
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 445566777889999999888877664 444 2356777888888899999999999999887533 2 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCccc----------HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc----
Q 004622 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----------SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH---- 618 (741)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---- 618 (741)
...++|.+|...|+-+.--+.++ .+.|.+ ..+++..|...+..+++.+|...+.+.++.....
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence 45678999999887654444333 344432 4567888999999999999999999999875322
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHh---hccCCc------ccchhhHHHHhcCCC--chhHhhhH
Q 004622 619 LIWNLTRWRNLCFNAWPFIRRRLLCTRL---LKSTVS------FAGLTLMEILIPSSR--NIGAKDCI 675 (741)
Q Consensus 619 ~~~~~~~~la~~~~~~g~~~~A~~~~~~---~~~~~~------~~~~~l~~~~~~~g~--~~~A~~~~ 675 (741)
.....+..++.+....|+..++...-+- +....| ++..-+-.++...|. .....+.|
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 1222366789999999999998743322 122222 122233456666776 44444443
No 255
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0028 Score=56.60 Aligned_cols=100 Identities=26% Similarity=0.212 Sum_probs=78.1
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhccCChhh----HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChh-HHHHHH
Q 004622 37 ITARIELAK-LCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-AYILKG 110 (741)
Q Consensus 37 ~~~~~~~~~-~~~~g~~~~Ai~~~~~al~~~~~~~~----~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~~g 110 (741)
.....++++ +++.|++++|+..++.++....+... -.++|++.+..|.+++|+..++.... +++.. .--.+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 333444444 56999999999999999986633322 47899999999999999998877543 33322 366799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 111 CAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 111 ~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
.++...|+-++|+..|++++..++++..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 9999999999999999999999866544
No 256
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.39 E-value=0.078 Score=58.44 Aligned_cols=260 Identities=15% Similarity=0.011 Sum_probs=173.2
Q ss_pred cHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHh
Q 004622 380 SVDFRLSRGIAQVN-----EGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQS 444 (741)
Q Consensus 380 ~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~ 444 (741)
+......+|.++.. ..|.+.|+.+|+.+... ...++.+.+.+|.+|.+.. +...|+.++.++.+.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 34455566766664 36899999999998771 1114667888999998853 678899999998776
Q ss_pred CCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCH
Q 004622 445 NPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENK 517 (741)
Q Consensus 445 ~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~ 517 (741)
. ++.+.+.+|.++.... ++..|..+|..+.... +..+.+.++.+|..- .+...|..++.++.+.+ ++
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~ 396 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NP 396 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Ch
Confidence 4 5677888899887655 5689999999888765 688888899888643 47889999999999887 45
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHH---HHH-HHHHHHHH----cCChHHHHHHHHHHHhhCcccHHHH
Q 004622 518 SAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQD----LANSEKALECLQQVLYIDKRFSKAY 588 (741)
Q Consensus 518 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~---~~~-~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 588 (741)
.+...++..+... +.++.+...+....+..-..+. ++. ........ ..+...+...+.++.. ..+..+.
T Consensus 397 ~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~ 474 (552)
T KOG1550|consen 397 SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAI 474 (552)
T ss_pred hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHH
Confidence 5555555554432 7777776666555444322211 111 11101111 1244556666665543 4557778
Q ss_pred HHHHHHHHHC----CChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhC-C--CHHHHHHHHHhhccCCc
Q 004622 589 HLRGLLLHGL----GQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAW-P--FIRRRLLCTRLLKSTVS 652 (741)
Q Consensus 589 ~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~~~~~~~ 652 (741)
..+|.+|..- .+++.|...|.++.... ... .+.+|.++..- | ....|..++........
T Consensus 475 ~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~-~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 475 LKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQA-LFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred hhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHH-HhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 8888888765 45888999998887776 244 77888888532 2 14666666666555444
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.014 Score=55.97 Aligned_cols=125 Identities=18% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCChH
Q 004622 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-EAWGHLTQFYQDLANSE 568 (741)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~ 568 (741)
+.-....|++.+|...+..++...|++..+...++.++...|+.+.|...+...-....... .........+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 33344445555555555555555555555555555555555555544444433211111110 00000111122222221
Q ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (741)
+. ..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 11 12333444556666666666666666666666666555555543
No 258
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.35 E-value=0.26 Score=54.69 Aligned_cols=232 Identities=15% Similarity=0.032 Sum_probs=138.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--
Q 004622 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--Y-------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-- 448 (741)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-- 448 (741)
++...+..++......++.+|..+..++...-+. . .......|.+....|+++.|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455667788888888888888888887664433 1 2444556777788888888888888888876654
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----hC
Q 004622 449 ---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--FNAAVEDLSACVK----LD 513 (741)
Q Consensus 449 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--~~~A~~~~~~al~----~~ 513 (741)
..+...+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+ +.+....+...-. ..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456677888888888888888888877763221 2234445677777773 3333333333222 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc--
Q 004622 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-- 584 (741)
Q Consensus 514 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-- 584 (741)
|.+.......+.++...-+++.+..-....++.. |... -.++.++.+.+..|++++|...+..........
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3333232223333222222555555444444432 2221 123478888888888888888887776542221
Q ss_pred -----HHHHHHHHHHHHHCCChHHHHHHHHHh
Q 004622 585 -----SKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (741)
Q Consensus 585 -----~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (741)
..++..........|+...|.....+.
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111222233344567888877777764
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.34 E-value=0.00044 Score=43.52 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 136 (741)
++++.+|.+|..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467777777777777777777777777777743
No 260
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.34 E-value=0.4 Score=53.24 Aligned_cols=231 Identities=14% Similarity=0.010 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 004622 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS--- 482 (741)
Q Consensus 415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 482 (741)
|......+.......++.+|..++.++...-+. ........|.+....|++++|++..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 455566777788888888888888887654333 12344556777788899999999999998887765
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----hCc
Q 004622 483 --ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--YKKAEEAHLKAIQ----LDR 548 (741)
Q Consensus 483 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--~~~A~~~~~~al~----~~~ 548 (741)
..++..+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+ +.+....+...-. ..|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3467778888888899999998888887763322 2334445777777883 2333333333222 223
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----Cccc--HH-HHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc---
Q 004622 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYI----DKRF--SK-AYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH--- 618 (741)
Q Consensus 549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 618 (741)
-+.......+.++...-+++.+.......++. .|.. .. ++..++.+....|+.++|...+.+...+....
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 33233333333333322355555444444433 2322 22 23478888999999999988888876543211
Q ss_pred --hHHHHHHHHHHHHHhCCCHHHHH-HHHH
Q 004622 619 --LIWNLTRWRNLCFNAWPFIRRRL-LCTR 645 (741)
Q Consensus 619 --~~~~~~~~la~~~~~~g~~~~A~-~~~~ 645 (741)
....++.-........|+...|. +.++
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11221222333446778888877 4444
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.32 E-value=0.012 Score=63.27 Aligned_cols=152 Identities=11% Similarity=-0.069 Sum_probs=113.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 004622 495 KFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (741)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 563 (741)
-.|+-+.++..+.++.+...-. +.+ ++.....+. .....+.|...+.......|+..-.++..|+++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4577788888888876632111 111 111111111 24567889999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCH--
Q 004622 564 LANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFI-- 637 (741)
Q Consensus 564 ~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~-- 637 (741)
.|+.++|++.|++++...... .-.++.+++++..+.+|++|..+|.+..+.+.-. .....|..|.|+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccchh
Confidence 999999999999988543332 3457889999999999999999999999876544 333366778999999999
Q ss_pred -----HHHHHHHHhh
Q 004622 638 -----RRRLLCTRLL 647 (741)
Q Consensus 638 -----~~A~~~~~~~ 647 (741)
++|..+++.+
T Consensus 359 ~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 359 AKEHKKEAEELFRKV 373 (468)
T ss_pred hhhhHHHHHHHHHHH
Confidence 7777666654
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.29 E-value=0.23 Score=49.51 Aligned_cols=123 Identities=12% Similarity=0.004 Sum_probs=84.6
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhC----C---C-------c
Q 004622 392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----P---S-------A 448 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~----~---~-------~ 448 (741)
...|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.+.- + . .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56788999999998886644 222 356677777778888 8889988888887762 1 1 1
Q ss_pred HHHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004622 449 GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (741)
Q Consensus 449 ~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 514 (741)
..++..++.++...+.++ +|...++.+-...|+.+.++...-.+..+.++.+.+.+.+.+++...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 235667777787776644 455555566666677777765555555567788888888888877543
No 263
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.041 Score=49.43 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHH
Q 004622 501 AAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECL 574 (741)
Q Consensus 501 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~ 574 (741)
+......+....+|.+. .+...++..+...+++++|+..++.++....+. .-+-.+++.+....|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444555555555554 334557888888899999999999888654432 335678899999999999998877
Q ss_pred HHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 575 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
....... -.+..-...|.++...|+.++|...|++++..+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 6543211 113345678999999999999999999999887554
No 264
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.16 E-value=0.011 Score=47.80 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CChh----------hHHHHHHHHHhhhcHHHHHHHHHHHHHh----
Q 004622 36 AITARIELAKLCSLRNWSKAIRILDSLLAQS---YEIQ----------DICNRAFCYSQLELHKHVIRDCDKALQL---- 98 (741)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~---~~~~----------~~~~~a~~~~~~g~~~~A~~~~~~al~~---- 98 (741)
+|-.-.++-+-+..|-|++|..-|.+|+++. |... ++..++.++..+|+|++++...+++|.-
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 4555577778899999999999999998844 2222 2467888999999999999888888753
Q ss_pred ---CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 99 ---DPT----LLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (741)
Q Consensus 99 ---~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 131 (741)
+.+ |+.+.+.+|.++..+|+.++|+..|+.+-+
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 333 355889999999999999999999999643
No 265
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.15 E-value=0.29 Score=49.43 Aligned_cols=166 Identities=20% Similarity=0.066 Sum_probs=95.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----c
Q 004622 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----L 462 (741)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~ 462 (741)
....+++..|...+..+-.. ..+.....++.+|... .+..+|..+|+.+. ...++.+.+.+|.+|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence 34567778888887776652 2235666677766644 35677777777443 34556677777777765 3
Q ss_pred CChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 004622 463 GESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----I 530 (741)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 530 (741)
.+..+|..+|+++....-.. ....+.+|..|..-. +...|...|.++-... ++.+.+.+|.+|.. .
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 36777777777777765333 233666666665431 1224555555555443 45555555555533 2
Q ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Q 004622 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (741)
Q Consensus 531 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 565 (741)
.++.+|..+|.++-+... ....+.++ ++...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 355566666666555444 44555555 444333
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=0.55 Score=57.78 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=92.1
Q ss_pred hhhhhHHHHHhhh-hhhhhhhhhhhhhHHHH--HHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHH
Q 004622 3 KRKLLDSRYRLNK-THKTICEIDELVRVDSV--MASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFC 78 (741)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~ 78 (741)
++-+.++.+.+.+ .+-.|++.|.+-.+-++ ......+.+. ..-..|+|+.|..+|++++..+ ++...+...-.+
T Consensus 1415 ~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil--~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~s 1492 (2382)
T KOG0890|consen 1415 EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQIL--EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKS 1492 (2382)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHH--HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHh
Confidence 3456778888888 99999999999998884 3333333344 3557899999999999999998 556667777788
Q ss_pred HHhhhcHHHHHHHHHHHHHhCCCChhHHHHHH-HHHHHcCCHHHHHHHH
Q 004622 79 YSQLELHKHVIRDCDKALQLDPTLLQAYILKG-CAFSALGRKEEALSVW 126 (741)
Q Consensus 79 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g-~~~~~~g~~~~A~~~~ 126 (741)
-+..|.+...+...+-.....++..+-++.+| .+-..++++|.-....
T Consensus 1493 ml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1493 MLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 89999999999988888777777777555544 3447788887665443
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.11 E-value=0.13 Score=56.86 Aligned_cols=175 Identities=21% Similarity=0.071 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC---
Q 004622 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG--- 463 (741)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~--- 463 (741)
...|..+++.+... .+..+...+|.+|..- .+.+.|+.+++.+... .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677777766543 3456666777776644 4777788888777651 1113445666777776632
Q ss_pred --ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 004622 464 --ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYK 534 (741)
Q Consensus 464 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~ 534 (741)
+...|+.++.++-... ++++.+.+|.++..-. ++..|.++|..+... .+..+.+.++.+|.. ..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 4566777777666654 4556666666665544 456677777766653 456666666666654 34566
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 004622 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLY 579 (741)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~ 579 (741)
.|..++.++.+.. .+.+...++.++..- +.+..+...+.....
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 7777777776665 344444444444332 555555544444433
No 268
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.10 E-value=0.16 Score=51.27 Aligned_cols=184 Identities=22% Similarity=0.150 Sum_probs=127.7
Q ss_pred HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cC
Q 004622 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FK 497 (741)
Q Consensus 426 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~ 497 (741)
...+.+..|...+..+-.. .++.....++.+|... .+..+|..+|..+. ...++...+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 4556778888888877652 2336677777777653 35788999998444 44567888889988887 45
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cC
Q 004622 498 DFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIG-------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LA 565 (741)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~~ 565 (741)
+..+|..+|.++....-.. ..+.+.+|..|..-. +...|...|.++-... ++.+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 8899999999998874433 344777777776642 2336788888877665 56777888877755 34
Q ss_pred ChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCC---------------ChHHHHHHHHHhhhhcCCc
Q 004622 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---------------QHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~~ 618 (741)
++.+|..+|.++-+... ....+.++ ++...| +...|..++..+....+..
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 78888888888887665 67777777 666555 5555666666665554443
No 269
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.04 E-value=0.48 Score=48.41 Aligned_cols=84 Identities=10% Similarity=-0.041 Sum_probs=59.1
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCh-h-----hHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 004622 46 LCSLRNWSKAIRILDSLLAQSYEI-Q-----DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 46 ~~~~g~~~~Ai~~~~~al~~~~~~-~-----~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
+=++|++++|..+|++...-..+. . .+.+|-.--+=+.+.+.--...-..-+..|+.+...+..|....+.|++
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 447899999999999987755333 2 2344443223334454444444455556788888899999999999999
Q ss_pred HHHHHHHHHH
Q 004622 120 EEALSVWEKG 129 (741)
Q Consensus 120 ~~A~~~~~~a 129 (741)
+.|++.+..-
T Consensus 96 ~kal~~ls~w 105 (549)
T PF07079_consen 96 RKALQALSVW 105 (549)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.03 E-value=0.016 Score=51.48 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (741)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (741)
+...++..+...|++++|+..+.+++..+|.+..++..+..+|...|+..+|+..|+++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555554
No 271
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.025 Score=50.24 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (741)
Q Consensus 521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (741)
..++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555555444
No 272
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.00 E-value=0.003 Score=43.91 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHH
Q 004622 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108 (741)
Q Consensus 72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 108 (741)
++.+|..+.++|+|++|...++.+|+.+|+|.+|...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3444555555555555555555555555555544433
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.97 E-value=0.0013 Score=41.29 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (741)
Q Consensus 70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 102 (741)
..|+.+|.+|..+|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 468899999999999999999999999999964
No 274
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.75 Score=56.66 Aligned_cols=334 Identities=12% Similarity=-0.005 Sum_probs=190.9
Q ss_pred hhhhHHHhcCChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHH
Q 004622 310 KLSSDSASLNDSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL 385 (741)
Q Consensus 310 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (741)
.++...++.+.|.+|+.++++- ...+.... .+..+-.+|...++.+..... ... .... ..+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv--------~~~-r~a~----~sl~ 1453 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGV--------SAR-RFAD----PSLY 1453 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhH--------HHH-hhcC----ccHH
Confidence 5788889999999999999985 22222111 222333366666665554331 111 0001 1233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCC
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG-QARAALGE 464 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~~~~~ 464 (741)
..-..+...|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+..++ .+-+..++
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc
Confidence 44556677899999999999999999998888888888888888888888877766655555444444433 22355566
Q ss_pred hHHHHHHHH-------------H-HHhhCCCCHHHH-HHHHHH----------HHHcCCHHHHHHHHHHHHHh-------
Q 004622 465 SVEAIQDLS-------------K-ALEFEPNSADIL-HERGIV----------NFKFKDFNAAVEDLSACVKL------- 512 (741)
Q Consensus 465 ~~~A~~~~~-------------~-al~~~p~~~~~~-~~la~~----------~~~~~~~~~A~~~~~~al~~------- 512 (741)
++.-..+.. + .+.....+.-.. ..+... ....|-|..+.++.-++...
T Consensus 1534 wD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1534 WDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 555444422 0 011111111100 011000 00111333333333332211
Q ss_pred ------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC----cccHHHHHHHHHHHHHcCChHHHHHHH
Q 004622 513 ------DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LD----RNFLEAWGHLTQFYQDLANSEKALECL 574 (741)
Q Consensus 513 ------~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~----~~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (741)
.+++ ..-|.+....-....+..+-+-.+++++- .+ ..-...|...|++....|+++.|..++
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111 12222222221112223444444555432 12 234679999999999999999999998
Q ss_pred HHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc-CC----------c----hHHHHHHHHHHHHHhCCCHH-
Q 004622 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM-MP----------H----LIWNLTRWRNLCFNAWPFIR- 638 (741)
Q Consensus 575 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~----------~----~~~~~~~~la~~~~~~g~~~- 638 (741)
-.|.+.. -+.++...|..+...|+-..|+..+++.++.+ |+ . ....+.+..+......|+++
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence 8887766 46888999999999999999999999998654 22 1 01112444555556666653
Q ss_pred HHH-HHHHhhccCCc---ccchhhH
Q 004622 639 RRL-LCTRLLKSTVS---FAGLTLM 659 (741)
Q Consensus 639 ~A~-~~~~~~~~~~~---~~~~~l~ 659 (741)
.++ .+|+.+....| ..++.+|
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHH
Confidence 333 67777665555 3445555
No 275
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.89 E-value=0.00093 Score=64.76 Aligned_cols=94 Identities=28% Similarity=0.392 Sum_probs=84.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 004622 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (741)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 466 (741)
.+.-.+..|.+++|++.|..++..+|.....+...+.++..+++...|+..+..++.++|+....+...+.....+|+|+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 45556778899999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHhhCC
Q 004622 467 EAIQDLSKALEFEP 480 (741)
Q Consensus 467 ~A~~~~~~al~~~p 480 (741)
+|...+..+.+++-
T Consensus 200 ~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 200 EAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999988764
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.88 E-value=0.83 Score=48.60 Aligned_cols=169 Identities=10% Similarity=-0.076 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Q 004622 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQ 562 (741)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 562 (741)
..|......-...|+++...-.|++++--.......|...+......|+.+-|-..+..+.++. |..+.....-+.+-.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 3455566666777888888888888877777777777777777777788877777777776664 555666666677777
Q ss_pred HcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHH---HHHHHhhhhcCCc-hHHHHHHHHHHHH-HhCCCH
Q 004622 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI---KDLSSGSRTMMPH-LIWNLTRWRNLCF-NAWPFI 637 (741)
Q Consensus 563 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~-~~~~~~~~la~~~-~~~g~~ 637 (741)
..|++..|...+++..+..|+...+-..........|+.+.+. +.+.....-..+. ....++...++.. .-.++.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 7778888888888887766777777666666777777777776 3333332211111 1223344444433 344556
Q ss_pred HHHHHHHHhhccCCc
Q 004622 638 RRRLLCTRLLKSTVS 652 (741)
Q Consensus 638 ~~A~~~~~~~~~~~~ 652 (741)
+.|........+..|
T Consensus 458 ~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 458 DLARIILLEANDILP 472 (577)
T ss_pred HHHHHHHHHhhhcCC
Confidence 666654444444433
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.83 E-value=0.61 Score=46.48 Aligned_cols=130 Identities=14% Similarity=0.020 Sum_probs=90.2
Q ss_pred HhcCChhhHHHHHHHhhccC-CCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHc
Q 004622 316 ASLNDSNTNSESYSKSSISD-NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNE 394 (741)
Q Consensus 316 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 394 (741)
.++|+++.|..++.++-... ..++.....++ +.++..|......
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La-----------------------------------~~~yn~G~~l~~~ 48 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELA-----------------------------------RVCYNIGKSLLSK 48 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHH-----------------------------------HHHHHHHHHHHHc
Confidence 45788888888888877655 33444333333 3455677778888
Q ss_pred C-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHcccHH---HHHHHHHHHHHhCCCcHHHHHHHH
Q 004622 395 G-KYASAISIFDQILKE----DPM---Y-------PEALIGRGTARAFQRELE---AAISDFTEAIQSNPSAGEAWKRRG 456 (741)
Q Consensus 395 g-~~~~A~~~~~~al~~----~p~---~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la 456 (741)
+ +++.|...++++.+. .+. . ..++..++.+|...+.++ +|...++.+-...|+.+..+...-
T Consensus 49 ~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l 128 (278)
T PF08631_consen 49 KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKL 128 (278)
T ss_pred CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 8 999999999988876 211 1 356778888888877654 455556666666788777775555
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCC
Q 004622 457 QARAALGESVEAIQDLSKALEFEP 480 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p 480 (741)
.+....++.+.+.+.+.+++...+
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcc
Confidence 555558889999999999887654
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.80 E-value=0.13 Score=52.37 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cCChHHHHHHHHHH
Q 004622 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD---LANSEKALECLQQV 577 (741)
Q Consensus 501 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a 577 (741)
.-+.+|++|++.+|++...+..+-.+..+..+.++...-+++++..+|+++..|...-..... .-.+......|.++
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 344455555555555555555444444445555555555555555555555544433322221 12334444444444
Q ss_pred HhhC------------------cccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622 578 LYID------------------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 578 l~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (741)
+..- .....++..+.......|..+.|+..++-.++.+
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 4321 0113456677778888899999999999888875
No 279
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.80 E-value=0.0078 Score=62.41 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=84.1
Q ss_pred hcCCHHHHHHHHHHHHhcc--CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 004622 48 SLRNWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (741)
Q Consensus 48 ~~g~~~~Ai~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 125 (741)
-.|+-..|+.++..|+... .......++|...++.|..-.|-..+..+|.++...+-.++.+|.+++.+.+.+.|+++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4689999999999999877 34445899999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHhcCCChH
Q 004622 126 WEKGYEHALHQSA 138 (741)
Q Consensus 126 ~~~al~l~p~~~~ 138 (741)
|+.|++++|+++.
T Consensus 699 ~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 699 FRQALKLTTKCPE 711 (886)
T ss_pred HHHHHhcCCCChh
Confidence 9999999999998
No 280
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.79 E-value=0.21 Score=50.86 Aligned_cols=164 Identities=14% Similarity=0.112 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 004622 402 SIFDQILKEDPMYPEALIGRGTARAFQRE------------LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469 (741)
Q Consensus 402 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 469 (741)
.-|++.++.+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34667777777777777776655443321 334455566666666666665555555555555556666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 470 QDLSKALEFEPNSADILHERGIVNFK---FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (741)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 546 (741)
+.+++++..+|++...|...-..... .-.++.....|.+++..-....... .........+
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~----------~~~~~~~~~~------ 149 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR----------MTSHPDLPEL------ 149 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc----------cccccchhhH------
Confidence 66666666666655555444333222 2234555555555544211000000 0000000000
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 004622 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (741)
Q Consensus 547 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (741)
......++..+.....+.|..+.|+..++-.++.+
T Consensus 150 e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 150 EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 00113355566667777788888888777777764
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.74 E-value=1.1 Score=47.87 Aligned_cols=122 Identities=10% Similarity=-0.019 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Q 004622 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLH 596 (741)
Q Consensus 518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~ 596 (741)
..|..........|+++...-.|++++--.......|...+......|+.+-|...+..+.++ .|..+.+...-+.+-.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 456666677778999999999999999888888999999999999999999998888888876 4566777888888888
Q ss_pred HCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHH
Q 004622 597 GLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRL 641 (741)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 641 (741)
..|++..|...+++..+.-|.. ... -........+.|+.+.+.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~-v~~-~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGL-VEV-VLRKINWERRKGNLEDAN 420 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCch-hhh-HHHHHhHHHHhcchhhhh
Confidence 8999999999999998877765 444 455566677788888877
No 282
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.70 E-value=0.013 Score=40.72 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
+.++.++..+.++|+|++|+...+.+|+++|+|.+ +......+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q-a~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ-AQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHH
Confidence 35788999999999999999999999999999999 666555554444
No 283
>PRK10941 hypothetical protein; Provisional
Probab=96.67 E-value=0.019 Score=55.93 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
..|+-.+|++.++++.|+..++.++.++|+++.-+--+|.+|.++|.+..|...++.-++..|+++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4677889999999999999999999999999988888999999999999999999999999999998
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.66 E-value=0.0033 Score=39.10 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622 105 AYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (741)
Q Consensus 105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 135 (741)
|++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 285
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.64 E-value=0.078 Score=54.59 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=96.3
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HH
Q 004622 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GE 450 (741)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~ 450 (741)
....|..++.++.++.++..+|++..|.+++++++-.........+..-..-...|.-. --| ..+.| ..
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r---L~~-----~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR---LDY-----RRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc---cCC-----ccccchHHHH
Confidence 34567777777777777777777777777777765321111000000000000000000 000 01112 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHH
Q 004622 451 AWKRRGQARAALGESVEAIQDLSKALEFEPN-SAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYTYL 523 (741)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l 523 (741)
+.+.....+.+.|-+..|+++.+-.+.++|. |+- +++.+-....+.++|+--+..++........ -+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4556666777788888888888888888887 543 4444455556777777777777665542111 23455666
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHHhCccc
Q 004622 524 GLALSSIGEY---------------KKAEEAHLKAIQLDRNF 550 (741)
Q Consensus 524 a~~~~~~~~~---------------~~A~~~~~~al~~~~~~ 550 (741)
+.+++..++- +.|...+.+|+...|.-
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 7777777776 77888888888877764
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.43 E-value=0.18 Score=51.90 Aligned_cols=169 Identities=14% Similarity=0.015 Sum_probs=100.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---H
Q 004622 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---D 484 (741)
Q Consensus 408 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~ 484 (741)
+..+|-+.+++..++.++..+|+...|.+.+++++-.........+..-..-...|.- +.--..+.|- .
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~--------rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC--------RLDYRRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc--------ccCCccccchHHHH
Confidence 3557777777777777777777777777777776532211000000000000000000 0000012232 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-c----cHHHHHHH
Q 004622 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-N----FLEAWGHL 557 (741)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~----~~~~~~~l 557 (741)
+++.....+.+.|-+..|.++.+-.+.++|. |+. +.+.+-....+.++++--+..++....... + -|..-+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4555667778889999999999999999998 663 444455555677888777777766554211 1 23456667
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHhhCccc
Q 004622 558 TQFYQDLANS---------------EKALECLQQVLYIDKRF 584 (741)
Q Consensus 558 a~~~~~~~~~---------------~~A~~~~~~al~~~p~~ 584 (741)
+.++...++. +.|...+.+|+...|.-
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 7777777777 78888888888887753
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.38 E-value=0.0074 Score=37.42 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (741)
Q Consensus 71 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 102 (741)
+++++|.++.+.|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999975
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.35 E-value=0.15 Score=44.75 Aligned_cols=80 Identities=20% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCC
Q 004622 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (741)
Q Consensus 521 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 600 (741)
..+..+-...++.+++...+.-..-+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..+|+
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33344444444444444444444444455444444445555555555555555555444444444444444444444444
No 289
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.32 E-value=0.0096 Score=56.76 Aligned_cols=66 Identities=20% Similarity=0.016 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
.+.|.-..+.|+.++|...|+.++.++|.+++++...|.....-++.-+|-++|-+||.++|.|+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 344455566799999999999999999999999999999999999999999999999999999998
No 290
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0052 Score=60.08 Aligned_cols=110 Identities=17% Similarity=0.046 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-----------CC---------hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-----------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 100 (741)
-..++.|++++|+.|..-|.+++.-- +| ...+.+.+.+-++.+.+..|+..+..++..+|
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 34678899999999999999987511 11 01146788999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 101 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
+..++++++|..+..+.++++|+..++.+....|++.. +...+.......
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~-i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA-IEEELENVRQKK 356 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH-HHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999 766666555444
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.30 E-value=0.0092 Score=37.96 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622 105 AYILKGCAFSALGRKEEALSVWEKGYEHA 133 (741)
Q Consensus 105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 133 (741)
++..+|.+|..+|++++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46677777888888888888887755443
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=0.33 Score=51.95 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCChHH
Q 004622 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---------EAWKRRGQARAALGESVE 467 (741)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---------~~~~~la~~~~~~~~~~~ 467 (741)
.++|+++. +.+|. +..|..++......-.++-|...|-++-.. |.-. .--...|.+-..-|+|++
T Consensus 679 ledA~qfi----EdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred hHHHHHHH----hcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 44444443 34554 888888888888777777777777665321 1110 001223444444578888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (741)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 545 (741)
|.+.|-.+-+.+ .-..++.+.|+|-....+++..-.-+. .-..++.++|..+..+..|++|.++|.+.-.
T Consensus 753 aek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 753 AEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 887775442221 111234455665555544443211111 1135667777777777777777777765422
Q ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (741)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (741)
.-++..++....+|++-. .....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 825 --------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 --------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred --------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 123344444444444322 22233355555555556666655655555555433
No 293
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.22 E-value=2.9 Score=47.02 Aligned_cols=90 Identities=14% Similarity=-0.054 Sum_probs=53.6
Q ss_pred hcCCHHHHHHHHHHHHhccCChhh-------HHHHHHHHHhhhcHHHHHHHHHHHHHhCCC----ChhHHHHH--HHHHH
Q 004622 48 SLRNWSKAIRILDSLLAQSYEIQD-------ICNRAFCYSQLELHKHVIRDCDKALQLDPT----LLQAYILK--GCAFS 114 (741)
Q Consensus 48 ~~g~~~~Ai~~~~~al~~~~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~~--g~~~~ 114 (741)
+..|++.|..++++++.+...... .+-++.++.+.+... |+..++++++.--+ .+.-.+++ ...+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 777888888888888776522221 234566666666666 88888877776544 12222222 22333
Q ss_pred HcCCHHHHHHHHHHHHHhc--CCChH
Q 004622 115 ALGRKEEALSVWEKGYEHA--LHQSA 138 (741)
Q Consensus 115 ~~g~~~~A~~~~~~al~l~--p~~~~ 138 (741)
..+++..|+..++....+. ++++.
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 3367777888877777665 34444
No 294
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.19 E-value=1.1 Score=45.64 Aligned_cols=214 Identities=11% Similarity=-0.011 Sum_probs=142.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---
Q 004622 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--- 478 (741)
Q Consensus 402 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 478 (741)
-.+++++..-|-.++.|+.........++-+.|+...++++...|. ....++.+|...++.+....+|+++++.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 3567778888888899998888888899999999888888776665 5667777777777766666666665432
Q ss_pred ---------------CCC-CHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc
Q 004622 479 ---------------EPN-SADI-----------LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG-LALSSI 530 (741)
Q Consensus 479 ---------------~p~-~~~~-----------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~ 530 (741)
+|. .++. +..+-..-.+..-.+.|...|-++-+..-....++..-| .-+...
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT 445 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence 010 0111 111122222334456677777776554322223332222 234567
Q ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHCCChHHHHHHH
Q 004622 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 531 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~ 608 (741)
|++..|-.+|+-.+...|+++......-..+...++-..|...|++++..-.+. ..+|-.+-..-..-|+...+...=
T Consensus 446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 888888888888888888887766666677778888888888888777543332 455666666666778888888777
Q ss_pred HHhhhhcCCc
Q 004622 609 SSGSRTMMPH 618 (741)
Q Consensus 609 ~~al~~~~~~ 618 (741)
++..+..|..
T Consensus 526 ~rf~e~~pQe 535 (660)
T COG5107 526 ERFRELVPQE 535 (660)
T ss_pred HHHHHHcCcH
Confidence 7777777765
No 295
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.18 E-value=0.0069 Score=55.34 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=57.0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
....+.++.+.|.+.+.+++.+-|.+...|+++|....+.|+++.|.+.|++.|+++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34567789999999999999999999999999999999999999999999999999998866
No 296
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.02 Score=62.20 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=102.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-----ChhhHHHHHHHHHhh--hcHHHHHHHHHHHHHhC
Q 004622 27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-----EIQDICNRAFCYSQL--ELHKHVIRDCDKALQLD 99 (741)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~-----~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~ 99 (741)
..+.-+..-+...+.|.+.+|.+++|..|.--|..++.+-| ....+.+.+.||+.+ |+|.+++.+|.-++...
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 44455566667788999999999999999888888887552 222367888888765 89999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004622 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (741)
Q Consensus 100 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 151 (741)
|....+.+.++.+|..+++++-|.+...-....+|.+.. +...........
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~-~~eif~elk~ll 174 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS-ASEIFEELKGLL 174 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999977 555555555444
No 297
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.42 Score=50.54 Aligned_cols=125 Identities=19% Similarity=0.128 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 004622 468 AIQDLSKALEFEPNSADILHE--RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK-AI 544 (741)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-al 544 (741)
++..+...+.++|.++..+.. ++..+...+....+.-....++..+|++..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555555555554322 244555555555666666666666666666666666555555444444433333 55
Q ss_pred HhCcccHHHHHHH------HHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHH
Q 004622 545 QLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (741)
Q Consensus 545 ~~~~~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 592 (741)
...|.+......+ +.....+|+..++...++++....|.++.+...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 5555555443333 55555555556666666666666665544443333
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.94 E-value=0.15 Score=44.73 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 461 (741)
..++.....-...++.+++...+..+--..|..++.-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34445555556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCh
Q 004622 462 LGES 465 (741)
Q Consensus 462 ~~~~ 465 (741)
.|+.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 6553
No 299
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.89 E-value=2.9 Score=48.56 Aligned_cols=93 Identities=8% Similarity=0.053 Sum_probs=74.8
Q ss_pred HHHhcCCHHHHHHHHHHHHh-cc---CChhhHHHHHHHHHhh-------hcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622 45 KLCSLRNWSKAIRILDSLLA-QS---YEIQDICNRAFCYSQL-------ELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (741)
Q Consensus 45 ~~~~~g~~~~Ai~~~~~al~-~~---~~~~~~~~~a~~~~~~-------g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 113 (741)
.++..+.|++|+..|++.-. .+ ....+.+..|.+.+.. ..+++|+..|++ |.-.|.-|--|...|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHH
Confidence 35678899999999999766 22 2344456677666554 368888888876 445688888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 114 SALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 114 ~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
..+|+++|=+++|.-|++.-|++|.
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999988
No 300
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.85 E-value=0.015 Score=35.53 Aligned_cols=31 Identities=35% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 004622 105 AYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (741)
Q Consensus 105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 135 (741)
+++.+|.++..+|++++|...|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555555555555555555555555443
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.82 E-value=2.7 Score=43.30 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=41.8
Q ss_pred hHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHH
Q 004622 313 SDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (741)
Q Consensus 313 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 361 (741)
......|+.-.|-+....++...|.++......+.+....|.|+.+...
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~ 345 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQD 345 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHH
Confidence 3455678888899999999999999999888889999999999988774
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.80 E-value=0.14 Score=41.60 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=63.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 387 RGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
+|..++..|++-+|+++.+..+..++++. ..+...|.++..+. ......+....+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH--------
Confidence 46678889999999999999998887765 34445555554332 12211122222222
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
.+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3456666666677766666777766666666666666666666653
No 303
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.70 E-value=0.052 Score=54.34 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhh-------------------HHHHHHHHHhhhcHHHHHHHHHHHHHhCCC
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD-------------------ICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~-------------------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 101 (741)
.++...|.+|+|..|+.-|.-||++.....+ -..+..||+++++.+-|+.-.-+.+.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 5677789999999999999999884311111 146788999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 102 LLQAYILKGCAFSALGRKEEALSVWEKG 129 (741)
Q Consensus 102 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a 129 (741)
++-.|++.+.++..+.+|.+|-..+--+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865544
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.67 E-value=0.022 Score=36.14 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=13.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 588 YHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
+..+|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666666666666666666643
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.62 E-value=0.023 Score=34.62 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 004622 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (741)
Q Consensus 70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 102 (741)
..+.++|.++..+|++++|+..++++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 457889999999999999999999999998864
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.59 E-value=0.14 Score=41.55 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (741)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 579 (741)
+++++.++..+.|..+..++.+|.-+.....|++++...++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44555555555555555555555544444445555555555443
No 307
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.55 E-value=0.89 Score=48.44 Aligned_cols=85 Identities=8% Similarity=-0.112 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhhccCCcccchhhHHHHh
Q 004622 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVSFAGLTLMEILI 663 (741)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 663 (741)
..+.+..++..+..+..+.-|-+.|++.- + ...+...+...+++.+|...-...-+-.+.+++..++.+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~g-----D-----~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMG-----D-----LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhc-----c-----HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 34445555555555555555555555431 1 2234455566666666665555544445556666666666
Q ss_pred cCCCchhHhhhHHHH
Q 004622 664 PSSRNIGAKDCIPRM 678 (741)
Q Consensus 664 ~~g~~~~A~~~~~~~ 678 (741)
...++++|-..|.++
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 666666666655444
No 308
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.54 E-value=6.6 Score=45.73 Aligned_cols=351 Identities=11% Similarity=-0.087 Sum_probs=173.1
Q ss_pred HHhhhhHHHhcCChhhHHHHHHHhhccCCCCch---hHHHHHHHHHchh-------cHHHHHHHHHHhHHHHHHHhhccC
Q 004622 308 HDKLSSDSASLNDSNTNSESYSKSSISDNKSSD---STESRSKLSFKWD-------MLKETSNEAKRNKKFCVTRISKSK 377 (741)
Q Consensus 308 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~ 377 (741)
+......+...+.|+.|+..|++.-...|...+ +....|....++- .+.+|+.+ ++. .-..
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~ 548 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSE--------FSY-LHGG 548 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHH--------HHH-hcCC
Confidence 344567888899999999999999999988655 4444444443322 23333332 222 2345
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCCCcHHHH
Q 004622 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQSNPSAGEAW 452 (741)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~ 452 (741)
+..+--++..|.+|...|++++-+++|.-+++..|.+|..-...-.+-+++. +-..|....--++...|.....-
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (932)
T PRK13184 549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR 628 (932)
T ss_pred CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch
Confidence 5666778889999999999999999999999999988754433333222221 12233344444444444322110
Q ss_pred --------------------------------HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 004622 453 --------------------------------KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (741)
Q Consensus 453 --------------------------------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (741)
+.+-. -+-.|..---.+.++++....| ..++...-.+...+|.++
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 705 (932)
T PRK13184 629 EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFL-SFWSGFTPFLPELFQRAWDLRD--YRALADIFYVACDLGNWE 705 (932)
T ss_pred HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHH-HHHhcCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhccHH
Confidence 00000 1112333333344445444433 244444555566777777
Q ss_pred HHHHHHHHHHHh-----CCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHcCC
Q 004622 501 AAVEDLSACVKL-----DKENKS--------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE-AWGHLTQFYQDLAN 566 (741)
Q Consensus 501 ~A~~~~~~al~~-----~p~~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~ 566 (741)
-+.......-.. .|.+.. .+..-..+......++++...+. ..+|.... +....+.-....++
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 782 (932)
T PRK13184 706 FFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPTLILYAFDLFAIQALLDEE 782 (932)
T ss_pred HHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHHHHHHHHHHHHHHHHHhcc
Confidence 655544433221 111110 11111222233345555554322 22333221 11111221222222
Q ss_pred hHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHCCChHHHHHHHHHhhh-hcCCchHHHHHHHHHHHHHhCCCHHHHHH
Q 004622 567 SEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGSR-TMMPHLIWNLTRWRNLCFNAWPFIRRRLL 642 (741)
Q Consensus 567 ~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 642 (741)
.+.-....+..-...+ ...........+|....++++|-+.+...-. .-..+..+. ....|..+.-.++-+-|..
T Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 861 (932)
T PRK13184 783 GESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEA-FVLYGCYLALTEDREAAKA 861 (932)
T ss_pred chHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchH-HHHHHHHHHhcCchhHHHH
Confidence 2222222222211111 1233344556677778888888887754421 111221233 5555666666777776666
Q ss_pred HHHhhccCCcccchhhHHHHhcCCCchhHhhh
Q 004622 643 CTRLLKSTVSFAGLTLMEILIPSSRNIGAKDC 674 (741)
Q Consensus 643 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 674 (741)
.+....+..+......+..+.-.|...+....
T Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (932)
T PRK13184 862 HFSGCREDALFPRSLDGDIFDYLGKISDNLSW 893 (932)
T ss_pred HHhhccccccCcchhhccccchhccccccccH
Confidence 55555544443333344444455555554443
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=4.5 Score=43.82 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 461 (741)
+++..+|..+.....+++|.++|.+.-. .-.+..|+++...|++-. .+...-|++...+-.+|..+..
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHh
Confidence 3444555555555555555555543211 122333444444443322 2222234444444555555555
Q ss_pred cCChHHHHHHH
Q 004622 462 LGESVEAIQDL 472 (741)
Q Consensus 462 ~~~~~~A~~~~ 472 (741)
.|--++|.+.|
T Consensus 865 vGMC~qAV~a~ 875 (1189)
T KOG2041|consen 865 VGMCDQAVEAY 875 (1189)
T ss_pred hchHHHHHHHH
Confidence 55555555544
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.51 E-value=1.6 Score=41.42 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 004622 394 EGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQ 443 (741)
Q Consensus 394 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~ 443 (741)
..+.++|+..|+++++..+... .++-.+..++++++++++-.+.|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4477888888888888776642 4556666777777887777777777653
No 311
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.91 Score=47.68 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC---cc----cHHHHHHHHHHHHHCCC-hHHHHHHHHHhhhhcCCc
Q 004622 553 AWGHLTQFYQDLANSEKALECLQQVLYID---KR----FSKAYHLRGLLLHGLGQ-HKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 618 (741)
-+..+|.++..+|+...|..+|..+++.. .. .|.+++.+|.++..+|. ..++..++.+|-+...+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 45667888899999999998888887431 11 26788899999999888 889999999987776444
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.40 E-value=0.12 Score=40.91 Aligned_cols=48 Identities=27% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622 89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (741)
Q Consensus 89 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 136 (741)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344555555555555555555555555555555555555555555443
No 313
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.37 E-value=4.2 Score=42.44 Aligned_cols=94 Identities=11% Similarity=-0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc
Q 004622 56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEHA 133 (741)
Q Consensus 56 i~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~ 133 (741)
+..|..|...- .+...|.+-....-+.+.+.+--..|..++..+|++++.|+.-+.-.+.-|. .+.|...|.++|..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 46788887644 6889998888888888889999999999999999999999999998888887 999999999999999
Q ss_pred CCChHHHHHHHHHHHHH
Q 004622 134 LHQSADLKQFLELEELL 150 (741)
Q Consensus 134 p~~~~~~~~~l~~~~~~ 150 (741)
|+++. ++...-.....
T Consensus 171 pdsp~-Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 171 PDSPK-LWKEYFRMELM 186 (568)
T ss_pred CCChH-HHHHHHHHHHH
Confidence 99999 55544443333
No 314
>PRK10941 hypothetical protein; Provisional
Probab=95.35 E-value=0.21 Score=48.81 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 004622 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557 (741)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 557 (741)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3445556677777777777777777777777777777777777777777777777777777777766654433
No 315
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.24 E-value=0.071 Score=51.08 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 458 (741)
+..|.-....|+.++|..+|+.++..+|.+++++...|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34555667789999999999999999999999999999998888889999999999999999988887766543
No 316
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.20 E-value=0.25 Score=39.17 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=16.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (741)
Q Consensus 506 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 547 (741)
+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333333444444444444444444444444444444444333
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.20 E-value=1.8 Score=41.13 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=119.1
Q ss_pred cCChhhHHHHHHHhhccCCCCch----hHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc-HHHHHHHHHHHH
Q 004622 318 LNDSNTNSESYSKSSISDNKSSD----STESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS-VDFRLSRGIAQV 392 (741)
Q Consensus 318 ~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~ 392 (741)
..+.++|+..|++++++.|...+ ++.....++++++++++.+........+....+....+.. ....+... .
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyi---S 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYI---S 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH---h
Confidence 34778899999999999876544 6777889999999999999987777665555444332221 11111111 1
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHcccHHHHHHHHHHHHHhCCC------------cHHHHHH
Q 004622 393 NEGKYASAISIFDQILKE--DPMYPEAL----IGRGTARAFQRELEAAISDFTEAIQSNPS------------AGEAWKR 454 (741)
Q Consensus 393 ~~g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~ 454 (741)
...+.+--..+|+..+.. +..+...| ..+|.+|+..++|.+-.+.+.+.-..... ..+++..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 223333334444443331 22333333 46888899888888877777665443211 1234555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 455 RGQARAALGESVEAIQDLSKALEFEPN--SADILH----ERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~----~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
-...|..+.+-.+-...|++++.+... +|.+.- .=|..+.+.|+|++|-..|-++++.
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 566777777777777788888776432 222221 2245677788888888888887775
No 318
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=3.7 Score=40.56 Aligned_cols=273 Identities=12% Similarity=-0.005 Sum_probs=165.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCCCc--H
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAI---QSNPSA--G 449 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~l---~~~~~~--~ 449 (741)
+..+.......++++++..|..++.. .|.+ ..+...+|..+.+.|+.++-........ ..-+.. .
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45566667778889999999998874 2221 3567789999999998887655554432 222211 1
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--C
Q 004622 450 EAWKRRGQAR-AALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKL----DKE--N 516 (741)
Q Consensus 450 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~--~ 516 (741)
.....+-... ...+....-+..+..+++....... .-..+..+|...++|.+|+......+.- +.. -
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 1122222222 2233455556666666654432222 2345678899999999999887776652 222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cccHH--HHHHHHHHHHHcCChHHHHHHHHHHHhhCc---ccHH
Q 004622 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLE--AWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSK 586 (741)
Q Consensus 517 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~ 586 (741)
..++..-..+|+...+..+|...+..+-... |.... .-..-|.++....+|.-|..+|-++++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 3556666788888889999988887765432 33222 223346667777899999999999987532 1223
Q ss_pred H---HHHHHHHHHHCCChHHHHHHH--HHhhhhcCCchHHHHHHHHHHHHH--hCCCHHHHHHHHHhhccCCcccchhhH
Q 004622 587 A---YHLRGLLLHGLGQHKKAIKDL--SSGSRTMMPHLIWNLTRWRNLCFN--AWPFIRRRLLCTRLLKSTVSFAGLTLM 659 (741)
Q Consensus 587 ~---~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~l~ 659 (741)
+ +-.+-.+-...+..++--..+ +.+++....+ ..+ ....+.++. .+.+|+.|+.-|+.-...+|.+...+.
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~-i~A-mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~ 325 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRD-IDA-MKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQ 325 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcc-hHH-HHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHH
Confidence 3 333444444556666544433 4455554444 566 777777774 467899999777776666664443333
No 319
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.63 Score=49.53 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CCh------hhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 113 (741)
..+.+.|+-.+|..+++.|...+.-- .+. ....+++.||+.+.+.+.|.+.++.|-+.||.++-..+..-++.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 35677899999999999999998732 211 11457788999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhc
Q 004622 114 SALGRKEEALSVWEKGYEHA 133 (741)
Q Consensus 114 ~~~g~~~~A~~~~~~al~l~ 133 (741)
...|+-++|+.+..+.....
T Consensus 439 ~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHhcchHHHHHHHHHHHhhh
Confidence 99999999999988866544
No 320
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=6 Score=41.88 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLS 507 (741)
Q Consensus 432 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~ 507 (741)
+...+.+.......|+++......+..+...|+.+.|+..++..+. +.- .-.++.+|.++.-+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444444555666666666666666666666666666665555 111 2235556666666666777766666
Q ss_pred HHHHhCC
Q 004622 508 ACVKLDK 514 (741)
Q Consensus 508 ~al~~~p 514 (741)
...+.+.
T Consensus 328 ~L~desd 334 (546)
T KOG3783|consen 328 LLRDESD 334 (546)
T ss_pred HHHhhhh
Confidence 6655443
No 321
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=3.8 Score=39.39 Aligned_cols=265 Identities=12% Similarity=0.012 Sum_probs=151.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcccHHHHHHHHHH---HHHhC--CCcHHH
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE---AIQSN--PSAGEA 451 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~---~l~~~--~~~~~~ 451 (741)
+.+|+.....+++++|+..|.+++..... ...+...++.+|...|++..--+.... +.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 46777888899999999999999875211 235678899999999987654444333 22221 111222
Q ss_pred HHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 004622 452 WKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKS 518 (741)
Q Consensus 452 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 518 (741)
...+..-+ .....++.-+..+...++...... ..-..+..++++.|.|.+|+......+.. .|.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22221111 123345556666666655432222 22334667888999999999887766542 233346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCc---ccHHH-
Q 004622 519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA- 587 (741)
Q Consensus 519 ~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~- 587 (741)
++..-..+|....+..++...+..+... +|....+- ..-|..++.-.+|.-|..+|-++++-.. .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6666778888888888887777666443 34433222 2335566777889999999988886533 22333
Q ss_pred ----HHHHHHHHHHCCChHHHHHHHH--HhhhhcCCchHHHHHHHHHHHH--HhCCCHHHHHHHHHhhccCCc
Q 004622 588 ----YHLRGLLLHGLGQHKKAIKDLS--SGSRTMMPHLIWNLTRWRNLCF--NAWPFIRRRLLCTRLLKSTVS 652 (741)
Q Consensus 588 ----~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~~~~~~~ 652 (741)
|..+..+. .+..++-...+. ..++...+..+++ ....+..+ ..+.+|..|+..|.--...++
T Consensus 247 ~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~a-m~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRA-MLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHH-HHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 22233332 233333322222 2233222222444 55666666 345678888855554433444
No 322
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=1.4 Score=46.69 Aligned_cols=133 Identities=20% Similarity=0.069 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 004622 400 AISIFDQILKEDPMYPEALIG--RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK-AL 476 (741)
Q Consensus 400 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al 476 (741)
++..+...+..+|.++..+.. +...+...+....+.-.+...+..+|.+..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666666677877766433 466666778888888888888888999888888888888777766666555554 77
Q ss_pred hhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004622 477 EFEPNSADILHER------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (741)
Q Consensus 477 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 532 (741)
...|.+......+ +.....+|+..++.....++....|.++.....+........+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 7788887665555 7777788888888888888888888887665555444333333
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.61 E-value=0.21 Score=51.02 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=67.2
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004622 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (741)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 540 (741)
..|+.-.|-+-+..++...|.++......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 34555555555556666666666655556666666666666665555544443333344444445555566666666555
Q ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc
Q 004622 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (741)
Q Consensus 541 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 582 (741)
+-.+...-+++++...-+......|-++++..++++.+.++|
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 555554444444444444444555555666666666665554
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.50 E-value=1.2 Score=38.48 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=40.7
Q ss_pred HcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHH
Q 004622 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLL 642 (741)
Q Consensus 563 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 642 (741)
..++.+++...+...--+.|+.+..-..-|+++...|++.+|+..|+...+-.+.. +.. --.++.|+..+||..--..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~-kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYG-KALLALCLNAKGDAEWHVH 99 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHH-HHHHHHHHHhcCChHHHHH
Confidence 34555555555554444555555555555555555555555555555554443332 222 3344555555555544443
Q ss_pred HHHhhcc
Q 004622 643 CTRLLKS 649 (741)
Q Consensus 643 ~~~~~~~ 649 (741)
....+..
T Consensus 100 A~~~le~ 106 (153)
T TIGR02561 100 ADEVLAR 106 (153)
T ss_pred HHHHHHh
Confidence 3333333
No 325
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=11 Score=42.93 Aligned_cols=240 Identities=16% Similarity=0.106 Sum_probs=125.5
Q ss_pred CchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHH
Q 004622 303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD 382 (741)
Q Consensus 303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 382 (741)
.++.++..+|......+...+|++.|-++ +|+..+.....+..+.|.|++-+..+..+.+ +......+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-------k~~E~~id 1169 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-------KVREPYID 1169 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-------hhcCccch
Confidence 34567888888888899999999988664 5777788888888888888888774222221 11111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 004622 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (741)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 462 (741)
. .+..+|...++..+-.++. ..|+.+ -.-..|.-++..+.|+.|.-+|... .-|..++..+...
T Consensus 1170 ~--eLi~AyAkt~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 S--ELIFAYAKTNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYL 1233 (1666)
T ss_pred H--HHHHHHHHhchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHH
Confidence 1 2223344445544433322 234432 2334555555666666655555432 2344555666666
Q ss_pred CChHHHHHHHHHHHhhC---------------------C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622 463 GESVEAIQDLSKALEFE---------------------P----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (741)
Q Consensus 463 ~~~~~A~~~~~~al~~~---------------------p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (741)
|+|+.|...-+++-... . -+++-+-.+...|...|-|++-+..++.++-+...+.
T Consensus 1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 66666666555542110 0 0123334445555566666666666666665555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Q 004622 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKAL 571 (741)
Q Consensus 518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~ 571 (741)
..+..+|.+|.+- ++++-.++++-.... .-+....|..+..+|.+-..|+.|.
T Consensus 1314 gmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5555555555432 233333333322111 0112334555555555555555443
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.43 E-value=0.62 Score=40.19 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 463 (741)
++.........++.+++...+..+--..|+.++.-..-|.++...|++.+|+..++...+..+..+.+.-.++.|+...|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444456777777777776666777777777777777777777777777777776666666666666666666666
Q ss_pred Ch
Q 004622 464 ES 465 (741)
Q Consensus 464 ~~ 465 (741)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 53
No 327
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=5.2 Score=38.51 Aligned_cols=201 Identities=8% Similarity=-0.013 Sum_probs=105.1
Q ss_pred HhhhhHHHhcCChhhHHHHHHHhhccCCC--------CchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622 309 DKLSSDSASLNDSNTNSESYSKSSISDNK--------SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS 380 (741)
Q Consensus 309 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (741)
.++++...+.+++++|+..|.+.+..... .......++.+|...|++..-.+......... . .-..|..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~--~ftk~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-E--DFTKPKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-H--HhcchhH
Confidence 35678888999999999999999976211 23367788899999988776555311111100 0 0011111
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCC
Q 004622 381 VDFRLSRGIA-QVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQS------NPS 447 (741)
Q Consensus 381 ~~~~~~~a~~-~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~ 447 (741)
..+...+-.. -.....++.-+..+...++-.... ...-..+...+++.|+|.+|+......+.. .|.
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 1111111111 112233444444444444322111 112234566677777777777766555432 233
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 448 AGEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNSADI--LHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
-..++..-..+|....+..++...+..+-.. .|....+ -..-|.....-.+|..|..+|-++++-
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 3445555566666666666655555444322 2222111 222244555666777777777777664
No 328
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.18 E-value=0.23 Score=41.69 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=62.6
Q ss_pred cCChhhHHHHHHHHHhhh---cHHHHHHHHHHHHH-hCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHH
Q 004622 66 SYEIQDICNRAFCYSQLE---LHKHVIRDCDKALQ-LDPTL-LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL 140 (741)
Q Consensus 66 ~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 140 (741)
+......+++|.+..+.. +-.+.+..++..++ -.|.. -+..|.++..+.++|+|+.++......|+.+|+|.+ +
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q-a 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ-A 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH-H
Confidence 455666788888888774 45577788888886 44433 347778888888889999999999999999998888 6
Q ss_pred HHHHHHHHHHH
Q 004622 141 KQFLELEELLT 151 (741)
Q Consensus 141 ~~~l~~~~~~~ 151 (741)
..+-......+
T Consensus 108 ~~Lk~~ied~i 118 (149)
T KOG3364|consen 108 LELKETIEDKI 118 (149)
T ss_pred HHHHHHHHHHH
Confidence 66555555554
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.16 E-value=3.9 Score=36.31 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=59.3
Q ss_pred HcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHH
Q 004622 427 FQRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFN 500 (741)
Q Consensus 427 ~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~ 500 (741)
+.+..++|+..|..+-+..-.. .-+.+..+.+..+.|+...|+..|..+-...|-. ..+...-+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3445555555555544332221 2234555556666666666666666554443211 112334445555666666
Q ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 501 AAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (741)
Q Consensus 501 ~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 545 (741)
+-....+..-. .+|-...+...||..-++.|++.+|..+|.+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55444433211 2333344555566666666666666666666554
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.12 E-value=0.95 Score=38.17 Aligned_cols=66 Identities=23% Similarity=0.174 Sum_probs=54.0
Q ss_pred hcCCHHHHHHHHHHHHh-cc--CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 004622 48 SLRNWSKAIRILDSLLA-QS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (741)
Q Consensus 48 ~~g~~~~Ai~~~~~al~-~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 113 (741)
...|.++-|.+++..++ -. ..-.+.+.+|..+.++|+|++++..++..++.+|+|.+|.-..-.+.
T Consensus 47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 45577888999999997 22 33445789999999999999999999999999999998876654443
No 331
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.11 E-value=2.8 Score=34.49 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hCC
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------SNP 446 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-------~~~ 446 (741)
..|.-.+..|-|++|...++++.+.... +..++..|+..+..+|+|++++....+++. ++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 3345556678888888888888875432 134566777777888888777666555553 333
Q ss_pred CcHH----HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622 447 SAGE----AWKRRGQARAALGESVEAIQDLSKALE 477 (741)
Q Consensus 447 ~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (741)
+... +.+..+..+...|+.++|+..|+.+-+
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3322 234455555556666666666655543
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.08 E-value=1.1 Score=42.46 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622 379 ISVDFRLSRGIAQVNEGKYASAIS-------IFDQILKEDPM------YPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (741)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~-------~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 444 (741)
..+..++.+|+.|...|+-+.... .|.+++..... .....+.+|.+..+.|++++|..+|.+++..
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 335667788888888888544444 44444433221 1356667777777777777777777777764
No 333
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.91 E-value=0.29 Score=50.75 Aligned_cols=86 Identities=15% Similarity=-0.009 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHH
Q 004622 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (741)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (741)
...|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-...++.++|....+++.|+.++..++++.+|++...
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 34455555555555555555555555544443 333444555555555555555555555555555555555555555
Q ss_pred HhhhhcCCc
Q 004622 610 SGSRTMMPH 618 (741)
Q Consensus 610 ~al~~~~~~ 618 (741)
.+....|.+
T Consensus 470 alq~~~Ptd 478 (758)
T KOG1310|consen 470 ALQMSFPTD 478 (758)
T ss_pred HHhhcCchh
Confidence 444444433
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.79 E-value=0.98 Score=41.30 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCc--cc----HHHH
Q 004622 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RF----SKAY 588 (741)
Q Consensus 518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~ 588 (741)
.++..+|..|.+.|+.++|++.|.++.+..... .+.+..+..+....+++.....++.++-..-. .+ ....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 445556666666666666666666655543221 34555556666666666666666666554321 11 1123
Q ss_pred HHHHHHHHHCCChHHHHHHHHHhhhhc
Q 004622 589 HLRGLLLHGLGQHKKAIKDLSSGSRTM 615 (741)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (741)
...|..+...++|..|.+.|-.+....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 344555666677777777776665443
No 335
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.60 E-value=6.7 Score=42.19 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Q 004622 386 SRGIAQVNEGKYASAISIFDQI------LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQ 457 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~ 457 (741)
.+|..+.-.|++.+|.++|.+. ++...+ .-.+..+.-++..|..++-....++-.+ .+-+.|. .-|.
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAE 711 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAE 711 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHH
Confidence 4677777788888888888653 222111 1234455555666665554444443221 1122222 2355
Q ss_pred HHHHcCChHHHHHHH----------HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004622 458 ARAALGESVEAIQDL----------SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (741)
Q Consensus 458 ~~~~~~~~~~A~~~~----------~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 527 (741)
.+...|+.++|+... +-+-+++..+.+.+..++..+.....+.-|-+.|.+.-.. ..+...+
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlH 783 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLH 783 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhhe
Confidence 666777777776533 2222334444555666666666666666666666654221 1234455
Q ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (741)
Q Consensus 528 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (741)
...++|++|....++--+.-| .+++-.|+.+....++++|.+.|.++
T Consensus 784 ve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 667777777766655433332 35555666666666666666555544
No 336
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.55 E-value=1.4 Score=40.34 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHH
Q 004622 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENK----SAYT 521 (741)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~ 521 (741)
++..+|..|...|+.+.|++.|.++....... .+.+..+..+.+..+++.....++.++-.... .+. ....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44555555555555555555555554433211 23444455555555555555555555544311 111 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 004622 522 YLGLALSSIGEYKKAEEAHLKAI 544 (741)
Q Consensus 522 ~la~~~~~~~~~~~A~~~~~~al 544 (741)
.-|..+...++|.+|...|-.+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 23444555556666555555443
No 337
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.54 E-value=1 Score=42.54 Aligned_cols=67 Identities=24% Similarity=0.191 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhC--c----ccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCC
Q 004622 551 LEAWGHLTQFYQDLANSE-------KALECLQQVLYID--K----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMP 617 (741)
Q Consensus 551 ~~~~~~la~~~~~~~~~~-------~A~~~~~~al~~~--p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 617 (741)
+..+..+|++|...|+.+ .|...|.+++... | +...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 345566777777777643 3444444444332 1 12456777888888888888888888888765433
No 338
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.45 E-value=0.15 Score=47.03 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=39.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCccc
Q 004622 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (741)
Q Consensus 527 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 584 (741)
....++.+.|.+.|.+++...|+....|+.+|....+.|+.+.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666667777777766666667777776666677777777777777666654
No 339
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=5.8 Score=42.21 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=29.2
Q ss_pred hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL 408 (741)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 408 (741)
....|..++.++.++.+...+|+.+.|....++++
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34568889999999999999999988888887776
No 340
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.19 E-value=0.64 Score=54.07 Aligned_cols=175 Identities=10% Similarity=0.044 Sum_probs=123.6
Q ss_pred CchHHHHhhhhHHHhcCChhhHHH------HHHHh-hccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc
Q 004622 303 GTHDVHDKLSSDSASLNDSNTNSE------SYSKS-SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK 375 (741)
Q Consensus 303 ~~~~~~~~lg~~~~~~~~~~~A~~------~~~~a-~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (741)
..++.....|......+.+.+|.+ .+... -..+|.....+..++.++.+.|++++|+....++....-.....
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 455566667777777888887777 66633 34577888899999999999999999999766665544455566
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-
Q 004622 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP- 446 (741)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~- 446 (741)
..+.....+..++...+..++...|...+.++... .|.-.....+++.++...++++.|+.+.+.++....
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 77777788888888888888888888888888763 344344556777777777888888888888876432
Q ss_pred -------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622 447 -------SAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (741)
Q Consensus 447 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (741)
.....+..++..+...+++..|+...+....
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 1233455556666666666655555554443
No 341
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=1.2 Score=47.54 Aligned_cols=97 Identities=16% Similarity=0.045 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 455 (741)
..+.+.|.-++...+|..+++.|...+...|.+ ......++.||..+.+.+.|.++++.+-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345677888899999999999999999887765 35667889999999999999999999999999999888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhh
Q 004622 456 GQARAALGESVEAIQDLSKALEF 478 (741)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~ 478 (741)
-.+....|.-++|+.........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888999999999988877654
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=6.6 Score=34.94 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQ 457 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~ 457 (741)
-|..+.-+.+.+..++|+.-|..+-+..-.. .-+....+.+..+.|+...|+..|..+-...|-. ..+...-+.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3455666677899999999998877654443 3566778899999999999999999987654422 124555677
Q ss_pred HHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004622 458 ARAALGESVEAIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (741)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 527 (741)
++...|.|+.-....+..-. .+|-...+.-.||..-++.|++.+|.+.|..... +...+....+.+.+.
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 78889999887766654322 2344466788899999999999999999999876 444454444444443
No 343
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.84 E-value=1.3 Score=51.61 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------C
Q 004622 381 VDFRLSRGIAQVNEGKYASAIS------IFDQI-LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------N 445 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~ 445 (741)
..-....|......|.+.+|.+ .+... -...|.....+..++.++...|++++|+..-.++.-+ .
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3445667777777778877777 44422 2245666777888888888888888888776665422 2
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 446 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
|+....+.+++......++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.++..
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344556666776666666777777766666543 2333444556666666666666676666666653
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.81 E-value=4.6 Score=42.97 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 441 (741)
.+.|+.+.|.+..++ .+++..|..+|.....+|+++-|.++|+++
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344555555443321 223455555555555555555555555543
No 345
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.85 E-value=0.59 Score=29.50 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCCC
Q 004622 104 QAYILKGCAFSALGRKEEALSV--WEKGYEHALHQ 136 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~--~~~al~l~p~~ 136 (741)
+.++.+|..+...|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566777788888888888888 44776676654
No 346
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.66 E-value=0.35 Score=46.72 Aligned_cols=84 Identities=7% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (741)
Q Consensus 439 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (741)
.++-...|+++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++.+|+++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33344455566666666655555566666666666666666666666554 33445555666666666666666666666
Q ss_pred HHHHH
Q 004622 518 SAYTY 522 (741)
Q Consensus 518 ~~~~~ 522 (741)
..|..
T Consensus 177 ~iw~e 181 (435)
T COG5191 177 RIWIE 181 (435)
T ss_pred hHHHH
Confidence 55543
No 347
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.64 E-value=17 Score=38.98 Aligned_cols=155 Identities=16% Similarity=0.058 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----C-----------
Q 004622 394 EGKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-----N----------- 445 (741)
Q Consensus 394 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~----------- 445 (741)
..-|++|...|.-++.. .|-+.+.+..++.+...+|+.+.|.....+++=. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45677888777777654 2445677778888888888888888887777621 1
Q ss_pred -----CCcHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH----
Q 004622 446 -----PSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN-FKFKDFNAAVEDLSACVK---- 511 (741)
Q Consensus 446 -----~~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al~---- 511 (741)
|.+-. +++..-..+.+.|-+..|.++++-.++++|. ++-+...+-.+| .+..+|.--+..++..-.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11211 2222333445567777777777777777776 555444444333 345556555555554422
Q ss_pred -hCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcc
Q 004622 512 -LDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDRN 549 (741)
Q Consensus 512 -~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~ 549 (741)
.-|+-. .-..+|..|..... -..|...+.+|+...|.
T Consensus 411 ~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 223322 12234444544443 45566667777766664
No 348
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.36 E-value=2.9 Score=40.92 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (741)
Q Consensus 72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 132 (741)
+..++..+...|+++.++..+++.+..+|.+-++|..+-.+|...|+...|+..|++.-++
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999999999999999999999999997653
No 349
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=17 Score=36.20 Aligned_cols=269 Identities=13% Similarity=0.048 Sum_probs=139.5
Q ss_pred hhhHHHhcCChhhHHHHHHHhhcc--CCCC--------chhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCcc
Q 004622 311 LSSDSASLNDSNTNSESYSKSSIS--DNKS--------SDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSIS 380 (741)
Q Consensus 311 lg~~~~~~~~~~~A~~~~~~a~~~--~p~~--------~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (741)
..+.....+++++++..|...+.. .|.+ ......++..+.+.|+..+-.........+... +. .+..
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~-v~--Kaka 86 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSS-VS--KAKA 86 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH-hh--hHHH
Confidence 445556667788999999998873 2221 236678888898888887766643333332211 10 0111
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----C--CC
Q 004622 381 VDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQS----N--PS 447 (741)
Q Consensus 381 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~--~~ 447 (741)
+...-.+-... ...+....-+..+...++-.... ...-..+...|...++|.+|+......+.. + +.
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 11111111111 11233334444444444322111 112235667777778888877776655432 2 12
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCH
Q 004622 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFE-----PNSA--DILHERGIVNFKFKDFNAAVEDLSACVKLDK---ENK 517 (741)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~ 517 (741)
-.+++..-..+|....+..+|...+..|-... |... ..-..-|.++....+|..|..+|-++++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 23455555666777777777766666554321 2111 1222234555556777777777777776421 112
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCcccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCc
Q 004622 518 ---SAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQDL--ANSEKALECLQQVLYIDK 582 (741)
Q Consensus 518 ---~~~~~la~~~~~~~~~~~A~~~--~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p 582 (741)
..+..+-.|-...+..++--.. -..+++....+..++...+.++... .+|+.|+..|..-+..+|
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 2233334444455555543333 2344555555566666666666443 456666666666555444
No 350
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.26 E-value=0.5 Score=30.83 Aligned_cols=30 Identities=37% Similarity=0.354 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622 104 QAYILKGCAFSALGRKEEALSVWEKGYEHA 133 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 133 (741)
.++..+|.+|...|++++|+..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456778888888888888888888877553
No 351
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=8.3 Score=39.40 Aligned_cols=147 Identities=19% Similarity=0.197 Sum_probs=68.4
Q ss_pred HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 004622 393 NEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (741)
Q Consensus 393 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 471 (741)
..|.+ .+++..=.+.+..+|+...+|...-.++...-... +..|.. ...-.++-+.+
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~~e------------k~~~ld~eL~~ 97 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEPLE------------KQALLDEELKY 97 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCHHH------------HHHhhHHHHHH
Confidence 34444 46667777777788887777665544433221100 111100 01123444444
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 004622 472 LSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLALSSI----GEYKKAEEAHLKAIQ 545 (741)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~ 545 (741)
...+++.+|+...+|+.+..++.+.+ ++..=+.+++++++.+|.+..+|...=.+.... ....+=+.+..+++.
T Consensus 98 ~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~ 177 (421)
T KOG0529|consen 98 VESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN 177 (421)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence 55555555555555555555554443 234445555555555555544443332222211 113344445555555
Q ss_pred hCcccHHHHHHHHHHH
Q 004622 546 LDRNFLEAWGHLTQFY 561 (741)
Q Consensus 546 ~~~~~~~~~~~la~~~ 561 (741)
.++.+..+|.....++
T Consensus 178 ~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 178 DNFSNYSAWHYRSLLL 193 (421)
T ss_pred ccchhhhHHHHHHHHH
Confidence 5555555555444443
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.93 E-value=5 Score=42.69 Aligned_cols=133 Identities=19% Similarity=0.104 Sum_probs=81.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 535 (741)
......++++++.+..... ++-|.- ......++..+.+.|-++.|+... .++...+.+ ..+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHH
Confidence 3344578999988777522 122222 455677788888889888887654 345555554 457799988
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 536 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
|.+..++ .+++..|..||......|+++-|..+|+++-. +..+..+|...|+.+.=.+..+.+...
T Consensus 337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8776433 34678999999999999999999999887632 345666777777765555555444433
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.90 E-value=0.37 Score=27.81 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Q 004622 104 QAYILKGCAFSALGRKEEALSVWE 127 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~~~ 127 (741)
.+++.+|.++...|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777777777777777664
No 354
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.76 E-value=0.5 Score=30.84 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHHHHHhC
Q 004622 70 QDICNRAFCYSQLELHKHVIRDCDKALQLD 99 (741)
Q Consensus 70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 99 (741)
..+.++|.+|...|++++|+..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 457899999999999999999999998763
No 355
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.73 E-value=0.55 Score=45.42 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=66.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 004622 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR-RGQARAALGESVEAIQDLSKALEFEPNS 482 (741)
Q Consensus 404 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (741)
|.++....|+++..|...+......|.+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555667778888888877778888888888888888888888887766 4445667788888888888888888888
Q ss_pred HHHHHHH
Q 004622 483 ADILHER 489 (741)
Q Consensus 483 ~~~~~~l 489 (741)
+.+|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 8776654
No 356
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=1.9 Score=41.59 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 72 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
..++=.+++..++++.|....++.+.++|+++-.+--+|.+|.++|-+.-|+.+++..++..|+.+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3455668999999999999999999999999999999999999999999999999999999999988
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.70 E-value=0.57 Score=29.97 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 004622 104 QAYILKGCAFSALGRKEEALSVWEKGYEHA 133 (741)
Q Consensus 104 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 133 (741)
+.+..+|.+-+..++|++|+..|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888887664
No 358
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=11 Score=38.70 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHH
Q 004622 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVE 504 (741)
Q Consensus 431 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~ 504 (741)
.++-+.+...+++.+|+...+|+.+..++.+.+. +..-++..+++++.+|.+-.+|...=.+.... ....+=+.
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 3444555555555555555555555555554432 44555555555555555544443332222211 12344455
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q 004622 505 DLSACVKLDKENKSAYTYLGLAL 527 (741)
Q Consensus 505 ~~~~al~~~p~~~~~~~~la~~~ 527 (741)
+..+++..++.+..+|.....++
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHH
Confidence 55555555555555555544443
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.59 E-value=1.8 Score=32.72 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCC-hhh---HHHHHHHHHhhhcHHHHHHHHHHHHH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQSYE-IQD---ICNRAFCYSQLELHKHVIRDCDKALQ 97 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~~-~~~---~~~~a~~~~~~g~~~~A~~~~~~al~ 97 (741)
-++.++|.+.+.++|+..++++++..++ +.. +..+..+|...|+|++.+...-.=+.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999986632 222 34566788888999988877655443
No 360
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=21 Score=36.43 Aligned_cols=124 Identities=15% Similarity=-0.009 Sum_probs=58.9
Q ss_pred HHcCChHHHHHHHHHHHhhC-CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-CHHHHHHHH
Q 004622 460 AALGESVEAIQDLSKALEFE-PNS--------ADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKE-NKSAYTYLG 524 (741)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~-p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~la 524 (741)
+..+++.+|...-+..+..- -.+ +..|+.+..+|...|+...-...+...+.. +.. -....+.+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 34466666666655544321 111 234555555555555544444444433332 111 122334445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcc
Q 004622 525 LALSSIGEYKKAEEAHLKAIQL----DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (741)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 583 (741)
..|...+.|+.|.....+..-- +...+..++.+|.+..-+++|..|.+++-+|+...|.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 5555555666655554444311 0112334455566666666666666666666665554
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.24 E-value=27 Score=36.86 Aligned_cols=202 Identities=11% Similarity=-0.027 Sum_probs=127.4
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 004622 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (741)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 456 (741)
.+.+..++..+-.++-..-.+.-...++.+++....+ -.+++.++.||... ..++-...+++.++.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3444445555555565666666677788888876554 78889999999888 567778888999998888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhC-CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH-HHHHHHHHH
Q 004622 457 QARAALGESVEAIQDLSKALEFE-PN--S---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA-YTYLGLALS 528 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~-p~--~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~-~~~la~~~~ 528 (741)
..|.. ++...+...|.+++... |. + .++|..+-. +--.+.+.-+....+.-...... ..+ +..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 88866 88888999999887653 21 1 122222211 11223333333333332222111 122 222234455
Q ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--------------------cCChHHHHHHHHHHHhhCcc
Q 004622 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------------------LANSEKALECLQQVLYIDKR 583 (741)
Q Consensus 529 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~al~~~p~ 583 (741)
...++++|+..+...++.+..+..+.-++...+.. -.++.+++.-|++.+..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 67788888888888888887777666665554444 34567777777777765543
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.97 E-value=1.6 Score=35.10 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred HHhhhcHHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 79 YSQLELHKHVIRDCDKALQLDP---------TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 79 ~~~~g~~~~A~~~~~~al~~~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
.++.|+|.+|++.+.+...... ...-+.+.+|.++...|++++|+..++.++++...+.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 3455666666555555444321 12346788888999999999999999999887655444
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.76 E-value=2 Score=34.53 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=47.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcc-----CC-----hhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCh
Q 004622 44 AKLCSLRNWSKAIRILDSLLAQS-----YE-----IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103 (741)
Q Consensus 44 ~~~~~~g~~~~Ai~~~~~al~~~-----~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 103 (741)
......|||..|++.+.+..... .. ..+..++|.++...|++++|+..+++++.+-....
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 45678999999988877776522 11 23368899999999999999999999999865443
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.63 E-value=23 Score=35.05 Aligned_cols=140 Identities=16% Similarity=0.041 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 465 (741)
.+-.......+..+-++.-..+++++|....++..++.- ...-..+|...++++++... ..++........|..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccc
Confidence 344445566777778888888888888888888777653 23345677777777776432 112222222222222
Q ss_pred HHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 004622 466 VEAIQDLSKALEFEPNSA--DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEE 538 (741)
Q Consensus 466 ~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~ 538 (741)
.+|. .+.+ .+. .+-..++.+..++|+..+|++.++...+..|-.. ..+-++-..+....-|.+...
T Consensus 263 ~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 263 HEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred hhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1111 122 2345677888888888888888888777666322 233344444444444443333
No 365
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.18 E-value=30 Score=35.89 Aligned_cols=206 Identities=9% Similarity=-0.025 Sum_probs=142.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 004622 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---- 512 (741)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 512 (741)
.+++++...|-.+++|+.........++-+.|+...++++...|. ....++.+|...++-+....+|+++.+.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ 366 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK 366 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence 467778888888999999999999999999999999999888775 6667778887777777766777666532
Q ss_pred --------------CCCC-HH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH-HHHHcC
Q 004622 513 --------------DKEN-KS-----------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ-FYQDLA 565 (741)
Q Consensus 513 --------------~p~~-~~-----------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~~~~ 565 (741)
+|.. .. ++...-..-.+..-.+.|...|.++-+..--...++..-|. -+...|
T Consensus 367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC
Confidence 1110 11 11112222233444667777777776543222333333232 245679
Q ss_pred ChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004622 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTR 645 (741)
Q Consensus 566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 645 (741)
++.-|...|+-.+...|+.+..-...-..+...++-..|...|+.++..-.......+|..+...-..-|+...++...+
T Consensus 447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~ 526 (660)
T COG5107 447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEE 526 (660)
T ss_pred CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence 99999999999999999988777777778888999999999999887643322233446666677777888877764433
No 366
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.47 E-value=3 Score=42.31 Aligned_cols=91 Identities=20% Similarity=0.058 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDP--------MY----------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 447 (741)
.-|..++.+++|..|.--|..+++... .. ..+--.+..||.++++.+.|+....+.+.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 334556666666666666666665421 11 123456888999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 004622 448 AGEAWKRRGQARAALGESVEAIQDLSKAL 476 (741)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al 476 (741)
...-+...|.++....+|.+|-+.+--+.
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999988877655443
No 367
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.37 E-value=1 Score=28.80 Aligned_cols=30 Identities=20% Similarity=0.096 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHHHHHhC
Q 004622 70 QDICNRAFCYSQLELHKHVIRDCDKALQLD 99 (741)
Q Consensus 70 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 99 (741)
..+..+|.+.+..++|++|+.+++++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999874
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.33 E-value=9.7 Score=35.08 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 004622 430 ELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN----SADILHERGIVNFKFKDFNAAV 503 (741)
Q Consensus 430 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~ 503 (741)
.-+.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+. +++++..|+.++.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345566555544322 1245677777777665 56778888888888877543 4778888888888888888774
No 369
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=3.3 Score=39.98 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 004622 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554 (741)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 554 (741)
+=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 334555666666666666666666666666666666666666666666666666666666655543
No 370
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=34 Score=35.06 Aligned_cols=129 Identities=13% Similarity=0.034 Sum_probs=84.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----C-CcHHHHH
Q 004622 389 IAQVNEGKYASAISIFDQILKEDP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQSN-----P-SAGEAWK 453 (741)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~-~~~~~~~ 453 (741)
..++.++++.+|..+-+..+..-. -.+..|+.+..+|...|+...-...+...+... . .......
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 344456888888887776654211 124567778888888888666555555444321 1 1223445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 004622 454 RRGQARAALGESVEAIQDLSKALEFE--P--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (741)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~--p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (741)
.+-..|...+.|+.|-....+..--. . .-+..++.+|.+..-+++|..|.+++-.++...|.+.
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 56667777888888888776654111 1 1245677888888889999999999999999988753
No 371
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.94 E-value=29 Score=34.11 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004622 482 SADILHERGIVNFKFKDFNAAVEDL 506 (741)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~ 506 (741)
++..+..+|..+++.|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4666666677776666666665554
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.83 E-value=40 Score=35.67 Aligned_cols=202 Identities=12% Similarity=-0.078 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 004622 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (741)
Q Consensus 412 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (741)
|-+-..+..+-.++.....+.-....+.+.+... .+.-+++.++.+|... ..++-...+++.++.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 4344455556666666666777777788888765 4567888999999887 6677888999999999888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHH-HHHHHHHHH
Q 004622 492 VNFKFKDFNAAVEDLSACVKL-DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAW-GHLTQFYQD 563 (741)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~-~~la~~~~~ 563 (741)
.|.+ ++-..+..+|.+++.. -|.. ..+|..+-. +--.+.+.-+....+.-.... ....+. ..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 8877 8889999999998864 2311 122322211 112233333333333222211 112222 222244566
Q ss_pred cCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHH--------------------CCChHHHHHHHHHhhhhcCCc
Q 004622 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--------------------LGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 564 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~~~~ 618 (741)
..++.+|+..+...++.+..+..+.-.+...+.. -.++.+++..|++.+..+..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 7889999999999998888777766665555444 456778888888887766555
No 373
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.38 E-value=56 Score=36.85 Aligned_cols=258 Identities=11% Similarity=0.048 Sum_probs=143.9
Q ss_pred CChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHH---HcC
Q 004622 319 NDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV---NEG 395 (741)
Q Consensus 319 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~g 395 (741)
+.-+.-+..++.-+.+++.+......+..++...|++++... ....+....|..+..|.....-.. ..+
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~--------ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~ 164 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQ--------ARLEMSEIAPLPPHLWLEWLKDELSMTQSE 164 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHH--------HHHHHHHhcCCChHHHHHHHHHHHhhccCc
Confidence 344556777788888888899999999999999999887766 555555666667766665544333 347
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcccHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHH
Q 004622 396 KYASAISIFDQILKEDPMYPEALIGRGTA-------RAFQRELEAAISDFTEAIQSNPS-------AGEAWKRRGQARAA 461 (741)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~-------~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~ 461 (741)
+..++...|++++... +++..|...+.. +...++++.-...|.+++..-.. ....+..+-..|..
T Consensus 165 ~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~ 243 (881)
T KOG0128|consen 165 ERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLC 243 (881)
T ss_pred chhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 8888999999998643 334444444433 34456677777788887764221 22334444444544
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHH----HHHHH---HHHHHcCCHHHHHHHHHH-------HHHhCCCCHHHHHHHHHHH
Q 004622 462 LGESVEAIQDLSKALEFEPNSADI----LHERG---IVNFKFKDFNAAVEDLSA-------CVKLDKENKSAYTYLGLAL 527 (741)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~----~~~la---~~~~~~~~~~~A~~~~~~-------al~~~p~~~~~~~~la~~~ 527 (741)
.-..++-+.++...+... -+.++ +.... .......+++.|..-+.+ .++..|.-...|..+-...
T Consensus 244 n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe 322 (881)
T KOG0128|consen 244 NVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFE 322 (881)
T ss_pred hHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 444455666666655544 22211 11111 011122333333333222 2222333334444444555
Q ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCcccHH
Q 004622 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFSK 586 (741)
Q Consensus 528 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~ 586 (741)
...|+.-.-...+++++.-.+.+...|...+...- .++-.+.+...+.+++...|-...
T Consensus 323 ~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd 382 (881)
T KOG0128|consen 323 KKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD 382 (881)
T ss_pred HhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH
Confidence 55666665566666666666666666655554332 223334445555555555554333
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.83 E-value=8 Score=29.39 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcccHHHHHHHHHHHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL---IGRGTARAFQRELEAAISDFTEAIQ 443 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l~ 443 (741)
.+..|.-++...+.++|+..++++++..++.+.-+ -.+..+|...|++.+.+.+..+-+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888888888888888777765443 4445566777777777776554443
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.14 E-value=36 Score=33.41 Aligned_cols=199 Identities=14% Similarity=0.048 Sum_probs=91.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcccHH-HHHHHHHHHHHh------CCCcHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQRELE-AAISDFTEAIQS------NPSAGEA 451 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~------~~~~~~~ 451 (741)
++.=+..+.+.|++..|.++..-.++. .+.+......++.+....+.-+ +-....+++++- .-.++..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 344456666777777666655554442 2333444455665555554222 222333333332 2346889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc
Q 004622 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL-ALSSI 530 (741)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~ 530 (741)
+..+|..+...|++.+|..+|-.. +++......- -...-..+..|.....+...+. .|...
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~-------------ll~~~~~~~~~~e~dlfi~RaVL~yL~l 154 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVM-------------LLEEWSTKGYPSEADLFIARAVLQYLCL 154 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHH-------------HHHHHHHHTSS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHH-------------HHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 999999999999998888777432 1222211100 0011112234444444444433 35556
Q ss_pred CCHHHHHHHHHHHHHh----Cc----------ccHHHHH--HHHHHHHHcCC---hHHHHHHHHHHHhhCcccHHHHHHH
Q 004622 531 GEYKKAEEAHLKAIQL----DR----------NFLEAWG--HLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAYHLR 591 (741)
Q Consensus 531 ~~~~~A~~~~~~al~~----~~----------~~~~~~~--~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 591 (741)
++...|...+....+. .| .....++ .+-..-++.++ +..-.+.|+..++.+|.....+..+
T Consensus 155 ~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~I 234 (260)
T PF04190_consen 155 GNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKI 234 (260)
T ss_dssp TBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 7777777766555544 22 1111111 11111223333 3333445556666677777778888
Q ss_pred HHHHHHCCC
Q 004622 592 GLLLHGLGQ 600 (741)
Q Consensus 592 a~~~~~~g~ 600 (741)
|..|+....
T Consensus 235 G~~yFgi~~ 243 (260)
T PF04190_consen 235 GQLYFGIQP 243 (260)
T ss_dssp HHHHH---S
T ss_pred HHHHCCCCC
Confidence 888877543
No 376
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=86.12 E-value=1 Score=44.66 Aligned_cols=133 Identities=15% Similarity=0.160 Sum_probs=85.5
Q ss_pred CchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHH
Q 004622 303 GTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD 382 (741)
Q Consensus 303 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 382 (741)
...+..+..|+..++.++++.|..-|.++...-... ...+-.+..+ ++.........
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~------------s~~~~~e~~~-----------~~~~~~~~r~~ 276 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQ------------SRDREKEQEN-----------RIPPLRELRFS 276 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccc------------cccccccccc-----------ccccccccccc
Confidence 334556678999999999999999999988643110 0000000000 01111222223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (741)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 458 (741)
.....+.+-+..+.+..|+.....++..++....+++..+..+....++++|++.+..+....|++......+...
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 3344667777777888887777777777777777888888888888888888888888888888777655444443
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.99 E-value=2.9 Score=26.38 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=6.9
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 004622 386 SRGIAQVNEGKYASAISI 403 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~ 403 (741)
.+|..+...|++++|+..
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333344444444444444
No 378
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.68 E-value=1.2 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=9.5
Q ss_pred HHHHHHHHHHCCChHHHHHHH
Q 004622 588 YHLRGLLLHGLGQHKKAIKDL 608 (741)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~ 608 (741)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444443
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.44 E-value=5 Score=39.34 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 444 (741)
..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3455677888888888888888888888888888888888888888888888888888877653
No 380
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.19 E-value=3.7 Score=35.67 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 004622 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (741)
Q Consensus 68 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 121 (741)
.......+|...+..|+|.-|...++.++..+|++..++..++.+|.++|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 344456778888888999999999999999999999999999999988876543
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.04 E-value=6.5 Score=36.20 Aligned_cols=71 Identities=17% Similarity=0.049 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcc--CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHcCCHHHH
Q 004622 51 NWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL----LQAYILKGCAFSALGRKEEA 122 (741)
Q Consensus 51 ~~~~Ai~~~~~al~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A 122 (741)
+-+.|...|-++-..+ .++...+.+|..|. ..+.++|+..+.++|++.+.. ++.+..++.++.++|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3456666666655444 55555566665555 578888888888888875433 66788888888888888776
No 382
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.93 E-value=40 Score=32.84 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 004622 522 YLGLALSSIGEYKKAEEAHLKAI 544 (741)
Q Consensus 522 ~la~~~~~~~~~~~A~~~~~~al 544 (741)
.+|..|+..|++++|+.+|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555555543
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.81 E-value=2.8 Score=40.47 Aligned_cols=57 Identities=23% Similarity=0.196 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (741)
Q Consensus 73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 129 (741)
...+..|...|.+.+|+..+++++.+||-+-.-+..+-.+|..+|+-=+|...|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455678999999999999999999999999999999999999999988999988884
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.70 E-value=37 Score=33.09 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 385 LSRGIAQVNEGKYASAISIFDQILK 409 (741)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~ 409 (741)
+.+..+++..|+..+|+.-|++-+.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555677777777777777766554
No 385
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.97 E-value=82 Score=35.65 Aligned_cols=246 Identities=10% Similarity=-0.045 Sum_probs=109.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 004622 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 471 (741)
...+++..-+.++. ..|.+.......+......|+.++|.....++.......+.....+-..+...|........
T Consensus 110 a~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 110 ARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHH
Confidence 34566666655332 24777777777788888889888887777777654433333333332333222322221111
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH-----------H-HcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 004622 472 LSKALEFEPNSADILHERGIVN-----------F-KFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEE 538 (741)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~-----------~-~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~ 538 (741)
-+--+.+...+......+...+ . -..+...+...+.. ..|... .....++..-....+.+.|..
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 1111111111111111111111 0 00111111111110 011111 112223333344556677777
Q ss_pred HHHHHHHhCccc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 539 AHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 539 ~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
.+.+.....+-+ ..++..+|.-....+...+|..++..+..... +.........+....++++.+..++...-..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 776543333211 22333444333333225566666665443221 2233333333444667776666666654322
Q ss_pred cCCchHHHHHHHHHHHHHhCCCHHHHHHHHHhh
Q 004622 615 MMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLL 647 (741)
Q Consensus 615 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 647 (741)
..+. ....|++|+.+...|+.++|...|+.+
T Consensus 342 ~~~~--~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 342 AKEK--DEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred hccC--HhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 222677777777777777777666655
No 386
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.86 E-value=12 Score=37.17 Aligned_cols=92 Identities=16% Similarity=0.106 Sum_probs=76.6
Q ss_pred HhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHH
Q 004622 47 CSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSALGRKEEALS 124 (741)
Q Consensus 47 ~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~ 124 (741)
-+.-||..=..+|.-...+.+++..-.|||.+..+.-=.+.++...+-.... -..+...+-.+|..+.++|+.++|..
T Consensus 307 aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ 386 (415)
T COG4941 307 AEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARA 386 (415)
T ss_pred cCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHH
Confidence 4667887777777776667799999999999999888888888887665554 23555688889999999999999999
Q ss_pred HHHHHHHhcCCChH
Q 004622 125 VWEKGYEHALHQSA 138 (741)
Q Consensus 125 ~~~~al~l~p~~~~ 138 (741)
.|++++.+.++..+
T Consensus 387 aydrAi~La~~~ae 400 (415)
T COG4941 387 AYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhcCChHH
Confidence 99999999998877
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.39 E-value=2.1 Score=28.46 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHH
Q 004622 73 CNRAFCYSQLELHKHVIRDCDKALQ 97 (741)
Q Consensus 73 ~~~a~~~~~~g~~~~A~~~~~~al~ 97 (741)
+++|.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566677777777777777777663
No 388
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.22 E-value=88 Score=35.42 Aligned_cols=262 Identities=10% Similarity=-0.056 Sum_probs=139.2
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------------HHHHHHHHHHHHcccHHHHHHH
Q 004622 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------------------EALIGRGTARAFQRELEAAISD 437 (741)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------------------~~~~~la~~~~~~~~~~~A~~~ 437 (741)
..|.+.......+......|+-++|.....++-......+ .-+.......+..|+...|...
T Consensus 124 ~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l 203 (644)
T PRK11619 124 EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYL 203 (644)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3466666667777778888888777776666544332211 1222223333444444444333
Q ss_pred HHHH-------------HHhCCC-----------cH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHH
Q 004622 438 FTEA-------------IQSNPS-----------AG--EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----DILH 487 (741)
Q Consensus 438 ~~~~-------------l~~~~~-----------~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~ 487 (741)
...+ +..+|. +. .....++.......+.+.|...+.+.....+-+. .++.
T Consensus 204 ~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~ 283 (644)
T PRK11619 204 AKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRD 283 (644)
T ss_pred HHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2211 111111 00 1112223333344556666666665444333222 2233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Q 004622 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567 (741)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 567 (741)
.+|.-....+...+|...+..+.... .+..............++++....++...-..........+.+|..+...|+.
T Consensus 284 ~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~ 362 (644)
T PRK11619 284 IVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRK 362 (644)
T ss_pred HHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCH
Confidence 34433333322455666666544322 23333444444555788888777777765443344566778888888888999
Q ss_pred HHHHHHHHHHHhhCccc----------------------H------HHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch
Q 004622 568 EKALECLQQVLYIDKRF----------------------S------KAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL 619 (741)
Q Consensus 568 ~~A~~~~~~al~~~p~~----------------------~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 619 (741)
++|...|+++.... +. . ......+..+...|....|...+..++.. .+
T Consensus 363 ~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~-- 438 (644)
T PRK11619 363 AEAEEILRQLMQQR-GFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-RS-- 438 (644)
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC--
Confidence 99988888875421 10 0 01233455566667777777776666554 22
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Q 004622 620 IWNLTRWRNLCFNAWPFIRRRLLC 643 (741)
Q Consensus 620 ~~~~~~~la~~~~~~g~~~~A~~~ 643 (741)
... ...++.+....|.++.++..
T Consensus 439 ~~~-~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 439 KTE-QAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HHH-HHHHHHHHHHCCCHHHHHHH
Confidence 233 56666777777777777643
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.96 E-value=12 Score=34.67 Aligned_cols=63 Identities=11% Similarity=-0.034 Sum_probs=54.1
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHH
Q 004622 77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD 139 (741)
Q Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 139 (741)
..+++.+...+|+...+.-++.+|.+...+..+-..|.-.|+|+.|...++-+-.++|+....
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 356777888889999998899999998888888888999999999999999999999888773
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.44 E-value=27 Score=36.49 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHH--HHHHHHHcccHHHHHHHHHHHHHh
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALIG--RGTARAFQRELEAAISDFTEAIQS 444 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~l~~ 444 (741)
....+..+++.++|..|...|+.+...-|.... .+.. .|..+...-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 346677888999999999999999886344333 3333 345556778899999999988765
No 391
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=82.24 E-value=38 Score=30.57 Aligned_cols=184 Identities=16% Similarity=0.116 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHhCCCcHHHHH
Q 004622 380 SVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARA-----FQRELEAAISDFTEAIQSNPSAGEAWK 453 (741)
Q Consensus 380 ~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~~~~~~A~~~~~~~l~~~~~~~~~~~ 453 (741)
.++....+|..+.. +.+|++|..+|..--..+. .+..-+.+|..+. ..++...|++.+..+-. .+.+.+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 34455556655543 5678888888876554333 2566666665554 23578889999988765 55677888
Q ss_pred HHHHHHHHc-----C--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004622 454 RRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (741)
Q Consensus 454 ~la~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 526 (741)
.+|.++..- + +..+|.+++.++-.+. +..+.+.|...|+.-.+ + +....|..... ...+..
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~~~ 177 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRAEL 177 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchhhh
Confidence 888777643 2 3678999999887765 56666667666654321 1 11123311100 012334
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CChHHHHHHHHHHHhh
Q 004622 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYI 580 (741)
Q Consensus 527 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~ 580 (741)
+.-..+.+.|.++--++-++. ++.+..++.+.|..- ++-++|..+-.++.++
T Consensus 178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 445678888988888887764 456666777666432 3567777777777665
No 392
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.99 E-value=75 Score=33.75 Aligned_cols=90 Identities=13% Similarity=0.009 Sum_probs=73.6
Q ss_pred hHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCC-HHHHH
Q 004622 323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAI 401 (741)
Q Consensus 323 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~ 401 (741)
.-...|+.+....+.|+..+........+.+.+.+..+ .+..+...+|.+++.|..-|.-.+..+. .+.|.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~k--------i~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saR 160 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKK--------IFAAMLAKHPNNPDLWIYAAKWEFEINLNIESAR 160 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHH--------HHHHHHHhCCCCchhHHhhhhhHHhhccchHHHH
Confidence 35778889998888899988888777766666766666 7777888899999999998888877665 89999
Q ss_pred HHHHHHHHhCCCCHHHHHH
Q 004622 402 SIFDQILKEDPMYPEALIG 420 (741)
Q Consensus 402 ~~~~~al~~~p~~~~~~~~ 420 (741)
.+|.+.++.+|+++..|..
T Consensus 161 alflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 161 ALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHhhcCCCChHHHHH
Confidence 9999999999999877643
No 393
>PF13041 PPR_2: PPR repeat family
Probab=81.79 E-value=4.3 Score=27.80 Aligned_cols=37 Identities=5% Similarity=0.136 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc--CChhhHHHHHH
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICNRAF 77 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~--~~~~~~~~~a~ 77 (741)
..+.-+++.|++++|.++|++..+.+ |+...|.-+-.
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555788888888888888888766 66655544433
No 394
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.12 E-value=6.8 Score=38.99 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 004622 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (741)
Q Consensus 502 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 563 (741)
|..+|.+|..+.|.+...++.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777677766666665554446666666666655
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.00 E-value=28 Score=34.02 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 441 (741)
+...+..|...|.+.+|+++.++++..+|-+...+..+-.++...|+--.+++.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3345556666666666666666666666666666666666666666666666555543
No 396
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=79.56 E-value=87 Score=33.29 Aligned_cols=29 Identities=14% Similarity=-0.028 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDP 412 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p 412 (741)
.-.+|+.++..|||+-|...|+.+.+...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 45789999999999999999998877543
No 397
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.19 E-value=75 Score=36.00 Aligned_cols=112 Identities=10% Similarity=0.067 Sum_probs=63.6
Q ss_pred HHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Q 004622 342 TESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIG 420 (741)
Q Consensus 342 ~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 420 (741)
+......+++...|+-|+. ..............++...|..++..|++++|...|-+.+.. +|.. +.
T Consensus 337 le~kL~iL~kK~ly~~Ai~--------LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--Vi-- 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAIN--------LAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--VI-- 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHH--------HHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--HH--
Confidence 3444556667777777777 333333333344567788999999999999999999988764 2321 11
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 004622 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (741)
Q Consensus 421 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 467 (741)
.-+....+..+-..+++...+..-.+.+--..|-.+|...++.++
T Consensus 405 --~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 405 --KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred --HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHH
Confidence 111222333333444444444433333334445556666655443
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.98 E-value=8.2 Score=40.10 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHH-------H-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 73 CNRAFCYSQLELHKHVIRDCDKAL-------Q-LDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (741)
Q Consensus 73 ~~~a~~~~~~g~~~~A~~~~~~al-------~-~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 130 (741)
..+.+++.-+|||..|++.++.+- . .-+-+...++..|-+|+.+++|.+|++.|...|
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999876531 1 113345589999999999999999999999965
No 399
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.88 E-value=91 Score=33.16 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC
Q 004622 417 ALIGRGTARAFQRELEAAISDFTEAIQSN 445 (741)
Q Consensus 417 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 445 (741)
....+|...+..++|+-|...|+.+.+..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 44568888888888888888888776643
No 400
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.75 E-value=7.7 Score=38.61 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004622 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (741)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (741)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999887655557777787777766
No 401
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.07 E-value=68 Score=30.94 Aligned_cols=46 Identities=24% Similarity=0.166 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhh-----CcccH---HHHHHHHHHH-HHCCChHHHHHHHHHhhh
Q 004622 568 EKALECLQQVLYI-----DKRFS---KAYHLRGLLL-HGLGQHKKAIKDLSSGSR 613 (741)
Q Consensus 568 ~~A~~~~~~al~~-----~p~~~---~~~~~la~~~-~~~g~~~~A~~~~~~al~ 613 (741)
+.|...|++|+.+ .|.+| ....+.+..| ..+|+.++|++..++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4455555555532 34333 2233344444 347777777777766654
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.87 E-value=1.5e+02 Score=34.62 Aligned_cols=110 Identities=12% Similarity=-0.045 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcccH--HHHHHHHHHHHHhCCCcHHH------
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQREL--EAAISDFTEAIQSNPSAGEA------ 451 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~------ 451 (741)
+..++..|...|++++|++.+.+..... +.....+-..-..+...+.. +-..++-.-.++.+|....-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5578888999999999999999888743 22233333333333344433 44555555555544432110
Q ss_pred -------HHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 004622 452 -------WKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN 493 (741)
Q Consensus 452 -------~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 493 (741)
-.....-+.......-++.+++.++..... +...+..+...|
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 001112234455666677777777766544 333444444443
No 403
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=66 Score=36.39 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=59.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHH
Q 004622 457 QARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKL-DKENKSAYTYLGLALSSIGEYK 534 (741)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~ 534 (741)
.++.+..-|+-|+...+.- ..+++. ..++...|..++..|++++|...|-+++.. +|....- -+....+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~------kfLdaq~Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK------KFLDAQRIK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH------HhcCHHHHH
Confidence 3444555566666654432 222221 346666777777778888888777777764 2222111 112333344
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 004622 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (741)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (741)
+-..+++...+..-.+..--..|-.+|.++++.++-.++.
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHH
Confidence 4445555555554444444555666777777766544443
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.60 E-value=26 Score=36.51 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-------H-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 488 ERGIVNFKFKDFNAAVEDLSACV-------K-LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (741)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al-------~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 545 (741)
.+.+++.-+|+|..|++.++..- . ..+-+..+++.+|.+|..+++|.+|++.|..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544321 0 1122335566677777777777777777766553
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.55 E-value=72 Score=33.41 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 453 KRRGQARAALGESVEAIQDLSKALEFEPNSAD--ILHE--RGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~--la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
...+.-.+..++|..|.+.+..+...-|.... .+.. .|..++..-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455556666677777766666664222222 2222 233344555666666666665543
No 406
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.51 E-value=1.6e+02 Score=33.48 Aligned_cols=235 Identities=12% Similarity=0.040 Sum_probs=124.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCC
Q 004622 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR-AALGESVEAIQDLSKALEFEPNS 482 (741)
Q Consensus 404 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~ 482 (741)
+++.+...|.....|..+.......|..-.-...+++++...+.+...|...+... ...+-.+.+...+.+++...|-.
T Consensus 301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t 380 (881)
T KOG0128|consen 301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT 380 (881)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchH
Confidence 33334444444455566666666778877777788888887777777777666544 23344445556666666666654
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHHh-
Q 004622 483 ADILHERGIVNFKFKDF-NAAVEDLSACVKLDKENKSAYTYLGLALSS--------------IGEYKKAEEAHLKAIQL- 546 (741)
Q Consensus 483 ~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------~~~~~~A~~~~~~al~~- 546 (741)
...|-..-..+.+.+.. ..-...+.+.+.. ...+++....+.+ ...+..|...|......
T Consensus 381 gdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~ 456 (881)
T KOG0128|consen 381 GDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQ 456 (881)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44433222222222211 1111112222111 0001111111111 11233344444443332
Q ss_pred CcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCcccHH-HHHHHHHHHHHCCChHHHHHHHHHhhhh--cCCchHHH
Q 004622 547 DRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSK-AYHLRGLLLHGLGQHKKAIKDLSSGSRT--MMPHLIWN 622 (741)
Q Consensus 547 ~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 622 (741)
-......+...|.+... .++.+.+...++..+.....+.. .|+....+-...|+...+..++++++.. +|++ ...
T Consensus 457 ~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~-~~e 535 (881)
T KOG0128|consen 457 LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPED-ALE 535 (881)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchh-HHH
Confidence 11123344455555443 46777888887777665554444 6777777777888888888888888653 3443 333
Q ss_pred HHHHHHHHHHhCCCHHHHHHH
Q 004622 623 LTRWRNLCFNAWPFIRRRLLC 643 (741)
Q Consensus 623 ~~~~la~~~~~~g~~~~A~~~ 643 (741)
++...-......|.++....+
T Consensus 536 v~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 536 VLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHHHHHHhccccHHHHhhh
Confidence 355556666677777776643
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.26 E-value=5.5 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622 106 YILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (741)
Q Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 136 (741)
.+.++.+|..+|+.+.|...++.++. .++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~~ 31 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE-EGDE 31 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH-cCCH
Confidence 46789999999999999999999994 4443
No 408
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=73.16 E-value=73 Score=28.88 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhhCCCCHHHH
Q 004622 413 MYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-----LGESVEAIQDLSKALEFEPNSADIL 486 (741)
Q Consensus 413 ~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~ 486 (741)
..|++-..||..+.- +.++++|...|..--..+. .+...+.+|..+.. .++...|++.+..+-. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 345566666655443 3456666665555433222 23333444443321 2345666666665554 3345555
Q ss_pred HHHHHHHHHc-----C--CHHHHHHHHHHHHHh
Q 004622 487 HERGIVNFKF-----K--DFNAAVEDLSACVKL 512 (741)
Q Consensus 487 ~~la~~~~~~-----~--~~~~A~~~~~~al~~ 512 (741)
..+|.++..- + +.++|..++.++-.+
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 5666555432 1 245566666665544
No 409
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.15 E-value=11 Score=22.46 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004622 395 GKYASAISIFDQILKEDPMYPEALIGRG 422 (741)
Q Consensus 395 g~~~~A~~~~~~al~~~p~~~~~~~~la 422 (741)
|+.+.|...|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3455666666666666666666655444
No 410
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.65 E-value=1.1e+02 Score=33.32 Aligned_cols=45 Identities=20% Similarity=0.095 Sum_probs=22.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 004622 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 441 (741)
.+.|+++.|.++..+ .++..-|..||......+++..|.+++.++
T Consensus 648 l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344555555443332 223444555555555555555555555554
No 411
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.59 E-value=10 Score=22.62 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHH
Q 004622 533 YKKAEEAHLKAIQLDRNFLEAWGH 556 (741)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~ 556 (741)
.+.+...|++++...|.++..|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 334444444444444444444433
No 412
>PF12854 PPR_1: PPR repeat
Probab=71.43 E-value=9.5 Score=23.61 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHH
Q 004622 551 LEAWGHLTQFYQDLANSEKALECLQ 575 (741)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~ 575 (741)
...|..+...+.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444444445555555444444
No 413
>PF13041 PPR_2: PPR repeat family
Probab=70.57 E-value=19 Score=24.44 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=9.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 004622 554 WGHLTQFYQDLANSEKALECLQQVL 578 (741)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al 578 (741)
|..+-..+.+.|++++|.+.|++..
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3333333444444444444444333
No 414
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.21 E-value=20 Score=31.26 Aligned_cols=52 Identities=25% Similarity=0.226 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 004622 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432 (741)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 432 (741)
.+..+..+...+..|++.-|..+.+.++..+|++..+...++.++.++|.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4566678888999999999999999999999999999999999888777433
No 415
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=70.18 E-value=1.2e+02 Score=30.22 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 004622 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490 (741)
Q Consensus 411 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 490 (741)
+.+....-+.+-....+..+..+-++....+++++|....++..++.-- ..-..+|.+.++++++... ..+...
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~s 253 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQS 253 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhH
Confidence 4444444455555666777788888888888999988888887777542 2345677888888876532 222222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCC
Q 004622 491 IVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLAN 566 (741)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~ 566 (741)
+.....|...+|. .+. ..+. .....++.|..++|+..+|++.++...+-.|-. ..+.-++...+....-
T Consensus 254 qq~qh~~~~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 254 QQCQHQSPQHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred HHHhhhccchhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 2222223222221 111 2222 334567889999999999999999888776632 2344556666666555
Q ss_pred hHHHHHHHHHH
Q 004622 567 SEKALECLQQV 577 (741)
Q Consensus 567 ~~~A~~~~~~a 577 (741)
|.+....+-+.
T Consensus 327 YADvqavLakY 337 (556)
T KOG3807|consen 327 YADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHhh
Confidence 55544444433
No 416
>PF12854 PPR_1: PPR repeat
Probab=69.72 E-value=12 Score=23.18 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHH
Q 004622 585 SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (741)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (741)
...|..+...|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56677777777888888888777765
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=69.30 E-value=8.9 Score=36.39 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=56.4
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CChhhH------------HHHHHHHHhhhcHHH--HHHHHHHHHH--hCCCChhHHHH-
Q 004622 47 CSLRNWSKAIRILDSLLAQS-YEIQDI------------CNRAFCYSQLELHKH--VIRDCDKALQ--LDPTLLQAYIL- 108 (741)
Q Consensus 47 ~~~g~~~~Ai~~~~~al~~~-~~~~~~------------~~~a~~~~~~g~~~~--A~~~~~~al~--~~p~~~~a~~~- 108 (741)
|--|+|+.|+++..-||+.+ +-+.-+ ..-|......|..-+ -...+..+.. --|+-+.|.+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 67899999999999999977 333322 233333444444211 1222333322 12555555544
Q ss_pred -HHHHHH---------HcCCHHHHHHHHHHHHHhcCCChH
Q 004622 109 -KGCAFS---------ALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 109 -~g~~~~---------~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
.|..++ ..++...|+..+++|+.++|+.-.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 455552 346788999999999999988644
No 418
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.08 E-value=39 Score=31.59 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 004622 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (741)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 550 (741)
+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3444555555555555555555555555555555555555555555555555555543
No 419
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.97 E-value=1e+02 Score=30.11 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHH
Q 004622 466 VEAIQDLSKALEFEPNSADILHERGIVNFKF--KDFNAAVEDLSACVKLDKENKSAYTYLGLAL------SSIGEYKKAE 537 (741)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~ 537 (741)
+.-+..+..+++-+|.+-.+|...-.++-.. .++..-....++.++.++.+...|...-.+. ..-..+..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3445556677777777777766666555443 4566666777777777777765554433332 2223333345
Q ss_pred HHHHHHHHhCcccHHHHHHH---HHHHHHcCC------hHHHHHHHHHHHhhCcccHHHHHHHHH
Q 004622 538 EAHLKAIQLDRNFLEAWGHL---TQFYQDLAN------SEKALECLQQVLYIDKRFSKAYHLRGL 593 (741)
Q Consensus 538 ~~~~~al~~~~~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~ 593 (741)
++-..++..++.+..+|... -...+..|+ +++-+.+.-.++-.+|++..+|..+-.
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 55556667777777777655 222233343 344455555556667777666654433
No 420
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=65.16 E-value=91 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 004622 463 GESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (741)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (741)
+.+...+.+++.++..++.++..+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 421
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=1.4e+02 Score=29.27 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CChHHH
Q 004622 399 SAISIFDQILKEDPMYPEALIGRGTARAF--------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL--GESVEA 468 (741)
Q Consensus 399 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--~~~~~A 468 (741)
.|++.-...+..+|....+|...-.+... ..-.+.-+..+..+++.+|.+...|...-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 34444444455555544444433333322 11234456667778888888888887777766554 557777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCC------H
Q 004622 469 IQDLSKALEFEPNSADILHERGIVN------FKFKDFNAAVEDLSACVKLDKENKSAYTYL---GLALSSIGE------Y 533 (741)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~------~ 533 (741)
+...++.+..++.+-.+|...-.+. .....+..-.++-..++..++.+..+|... -...+..|+ +
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l 209 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYL 209 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHH
Confidence 7788888888888766654433332 233344445666666777888888887765 233333443 4
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHH
Q 004622 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (741)
Q Consensus 534 ~~A~~~~~~al~~~~~~~~~~~~la~~ 560 (741)
++-+++.-.++-.+|++..+|..+-.+
T Consensus 210 ~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 210 EKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHHHHHHHhhhhcCccccchhhHHHHH
Confidence 455666666677788888777655443
No 422
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.77 E-value=95 Score=33.78 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=26.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (741)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 544 (741)
.+.|+++.|..+..++ ++..-|..||.+....+++..|.+++.++.
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4556666555544332 445556666666666666666666666654
No 423
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.73 E-value=48 Score=34.58 Aligned_cols=109 Identities=16% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 004622 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE-EAHLKAIQ 545 (741)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~ 545 (741)
+|+-.++.++...|.+......+..+|...|-...|...|...--.+-.....-+.+..-....|.+..+. ..++.+..
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~ 280 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALK 280 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHH
Q ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHH
Q 004622 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (741)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 575 (741)
....+..-.......-++.|.|.+-.+..+
T Consensus 281 fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 281 FYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 424
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=62.53 E-value=35 Score=28.70 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhH
Q 004622 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDI 72 (741)
Q Consensus 35 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~ 72 (741)
..+.+-..+-.++.+|++++|+..|-+||.+.+++..+
T Consensus 62 ~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 62 FFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 34445566666788999999999999999999776653
No 425
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=62.27 E-value=1.8e+02 Score=29.32 Aligned_cols=188 Identities=12% Similarity=-0.015 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 004622 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475 (741)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 475 (741)
-.++|+.+-+-....-|..++++-.++...++..+...=...=-..+-+...+.. .+..+-.+++...+.++
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~--------lW~r~lI~eg~all~rA 282 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS--------LWDRALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh--------hhhHHHHHHHHHHHHHH
Confidence 4578888888888899988999888877766543221100000000001111111 12223345666666666
Q ss_pred HhhCC-CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Q 004622 476 LEFEP-NSADILHERGIVNFK-----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--D 547 (741)
Q Consensus 476 l~~~p-~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 547 (741)
+.... .--...-.++-++.. .-+|..-..+|.-.....|+-. +-.+.+....+..-...++...+-.... -
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-EeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 65542 222222223333322 2356655566666555555433 3334444444444455666665555443 2
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHH
Q 004622 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (741)
Q Consensus 548 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 592 (741)
..+...+...|.++.+.|+.++|...|++++.+.++..+..+...
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 233445566777788888888888888888887776655544433
No 426
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=61.68 E-value=36 Score=30.28 Aligned_cols=65 Identities=12% Similarity=-0.057 Sum_probs=48.0
Q ss_pred HHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cc--------CChhhHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 004622 33 MASAITARIELAKLCSLRNWSKAIRILDSLLA-QS--------YEIQDICNRAFCYSQLELHKHVIRDCDKALQ 97 (741)
Q Consensus 33 ~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~-~~--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 97 (741)
.+.........++.++.|+...|++.+..+-. +. .....-.++|..++..|++.+|...+..+++
T Consensus 72 ~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 72 TPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44445556889999999999999999998833 22 2222357899999999999999999988874
No 427
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.33 E-value=1.8e+02 Score=29.12 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=72.3
Q ss_pred hHHHHHHHhHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccC---------ChhhHHHHHHHHHhhhcHHHHHHHHHHH--
Q 004622 28 RVDSVMASAITARIELAKLC-SLRNWSKAIRILDSLLAQSY---------EIQDICNRAFCYSQLELHKHVIRDCDKA-- 95 (741)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~Ai~~~~~al~~~~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~a-- 95 (741)
++-|......+.|..++..| +.++|+.|.+.+.- |..+. -...+...|..|++.++..+|-...+++
T Consensus 94 rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSi 172 (399)
T KOG1497|consen 94 RVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASI 172 (399)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444555666777777777 67899999887753 33331 1122578899999999999999988876
Q ss_pred HHhCCCChhH----HHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 004622 96 LQLDPTLLQA----YILKGCAFSALGRKEEALSVWEKGYEHAL 134 (741)
Q Consensus 96 l~~~p~~~~a----~~~~g~~~~~~g~~~~A~~~~~~al~l~p 134 (741)
+..+..|... -.+.+.++-..+++-||-+.|.+.....-
T Consensus 173 l~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki 215 (399)
T KOG1497|consen 173 LQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKI 215 (399)
T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455553 34466677777888888888887665443
No 428
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=61.22 E-value=17 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhccCChhhHHHHHH
Q 004622 51 NWSKAIRILDSLLAQSYEIQDICNRAF 77 (741)
Q Consensus 51 ~~~~Ai~~~~~al~~~~~~~~~~~~a~ 77 (741)
++++|..+|++.+...|++..|..-|.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 567888888888877777777665543
No 429
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.81 E-value=35 Score=25.88 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhCCCChh
Q 004622 88 VIRDCDKALQLDPTLLQ 104 (741)
Q Consensus 88 A~~~~~~al~~~p~~~~ 104 (741)
|+..+.+++...|+++.
T Consensus 32 aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 32 AIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHhCCChHH
Confidence 34444444455555544
No 430
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.37 E-value=2.3e+02 Score=33.14 Aligned_cols=162 Identities=19% Similarity=0.073 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH-------
Q 004622 452 WKRRGQARAALGESVEAIQDLSKALEFE----PNSADILHERGIVNFKFKDF--NAAVEDLSACVKLDKENKS------- 518 (741)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~------- 518 (741)
+..|+..|...|+.++|++.+.+...-. +...+.+-..-..+...+.. +-..++-.-.+..+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6678888888999999999998887733 22233333344444444443 4445555545555544320
Q ss_pred --H----HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHc--------CChHHHHHH--HHHHHhh-
Q 004622 519 --A----YTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFYQDL--------ANSEKALEC--LQQVLYI- 580 (741)
Q Consensus 519 --~----~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~--------~~~~~A~~~--~~~al~~- 580 (741)
. --....-++.....+-++.+++.++..... ....+..++..|... ++-+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 0 011123345667778888889888877655 333344444444321 222233333 2222221
Q ss_pred ------Ccc-------cHHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622 581 ------DKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGSR 613 (741)
Q Consensus 581 ------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (741)
+|+ ....|...+.++.++|+.++|+..|-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 221 134577788888888888888887776654
No 431
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.04 E-value=1.9e+02 Score=32.54 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=68.0
Q ss_pred HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH---HcccHHHHHHHHHHH
Q 004622 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------EALIGRGTARA---FQRELEAAISDFTEA 441 (741)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~---~~~~~~~A~~~~~~~ 441 (741)
.++....-..++.-..+-..|....+|+.-+++.+..-. -|+.. .+.+..+.++- +-|+-++|+...-.+
T Consensus 191 ~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~l 269 (1226)
T KOG4279|consen 191 TRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPL 269 (1226)
T ss_pred hhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHH
Confidence 334444555566666777777777788777776655433 34211 11112222222 236677777777666
Q ss_pred HHhC-CCcHHHHHHHHHHHHH---------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 004622 442 IQSN-PSAGEAWKRRGQARAA---------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (741)
Q Consensus 442 l~~~-~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (741)
++.. |-.++.+...|.+|-. .+..+.|+.+|+++++..|.. ..-.+++.++...|
T Consensus 270 ve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 270 VEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAG 334 (1226)
T ss_pred HHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhh
Confidence 6653 3344555555555532 344566777777777777742 33344455554444
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.36 E-value=43 Score=31.11 Aligned_cols=53 Identities=21% Similarity=0.173 Sum_probs=46.3
Q ss_pred hcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 004622 83 ELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (741)
Q Consensus 83 g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 136 (741)
+..+..+...++.++..| ++..+..++.++...|+.++|.+...++..+-|.+
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 445667788889999999 67789999999999999999999999999999944
No 433
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.13 E-value=2.6e+02 Score=29.15 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH--HHHHHHcccHHHHHHHHHH
Q 004622 386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGR--GTARAFQRELEAAISDFTE 440 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l--a~~~~~~~~~~~A~~~~~~ 440 (741)
..+..+++.++|..|...|++++...+.. ...+..+ |..+...-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45667899999999999999999875432 2333333 4445567788999999885
No 434
>PF15469 Sec5: Exocyst complex component Sec5
Probab=55.52 E-value=1.7e+02 Score=26.84 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS 66 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~ 66 (741)
..+.+++++|+|+.++..|.+|..+-
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 44777889999999999999987755
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.34 E-value=2e+02 Score=29.81 Aligned_cols=94 Identities=12% Similarity=-0.059 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c-ccHHH
Q 004622 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-------R-NFLEA 553 (741)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~-~~~~~ 553 (741)
++..+|..|...|+.+.|++.|.++-...... ...+.++-.+-...|+|..-..+..++...- + -.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45556666666666666666666644433222 2344555555555666665555555554431 0 00223
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 004622 554 WGHLTQFYQDLANSEKALECLQQVL 578 (741)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al 578 (741)
...-|.+....++|..|.+++-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4445556666678888888776654
No 436
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.75 E-value=3.8e+02 Score=30.35 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH---HH---HH
Q 004622 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ---AR---AA 461 (741)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~---~~---~~ 461 (741)
-.+++-.|+|+.|+.++-+ .+.+..--..+|.++...|-....-..-...+..++.++.. .+++. .| +.
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHh
Confidence 3456778999999988876 22222222334444444443332222224444444443221 12221 22 23
Q ss_pred cCChHHHHHHHHHH
Q 004622 462 LGESVEAIQDLSKA 475 (741)
Q Consensus 462 ~~~~~~A~~~~~~a 475 (741)
..+..+|+++|--+
T Consensus 340 ~td~~~Al~Y~~li 353 (613)
T PF04097_consen 340 ITDPREALQYLYLI 353 (613)
T ss_dssp TT-HHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHH
Confidence 55677777777543
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.21 E-value=2.8e+02 Score=28.81 Aligned_cols=95 Identities=17% Similarity=0.032 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----c----ccHH
Q 004622 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYID----K----RFSK 586 (741)
Q Consensus 518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----~~~~ 586 (741)
.++..+|.-|...|+.+.|++.|.++-..... ....+.++..+-...|+|..-..+..++.+.- . -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 56778999999999999999999997776544 35577788888888999988888877776541 0 0133
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 587 AYHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
+...-|.+...+++|+.|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566777777789999999887774
No 438
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=52.86 E-value=61 Score=27.17 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=60.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCh----------------hhHHHHHHHHHhhhcHHHHHHHHH----HHHHhCC
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQSYEI----------------QDICNRAFCYSQLELHKHVIRDCD----KALQLDP 100 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~~~~----------------~~~~~~a~~~~~~g~~~~A~~~~~----~al~~~p 100 (741)
..+..+|+.+++-.||-.|.+|+.+..+. ....|+|..+..+|+.+-.+++++ +++.+-|
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiP 85 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIP 85 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhcc
Confidence 56788999999999999999998744111 013688999999999998888876 5577777
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChH
Q 004622 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 101 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 138 (741)
..+...-. ..-..+|=-..|+-.| ++..|+..-
T Consensus 86 QCp~~~C~--afi~sLGCCk~ALl~F---~KRHPNP~i 118 (140)
T PF10952_consen 86 QCPNTECE--AFIDSLGCCKKALLDF---MKRHPNPEI 118 (140)
T ss_pred CCCCcchH--HHHHhhhccHHHHHHH---HHhCCCHHH
Confidence 76552110 0112334444555444 456676544
No 439
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=52.79 E-value=38 Score=28.53 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 004622 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFL 144 (741)
Q Consensus 105 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 144 (741)
-.+.+|..+...|++++|..+|-+|+...|+... +...+
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~-LL~i~ 103 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE-LLQIY 103 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH-HHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH-HHHHH
Confidence 3456899999999999999999999999999877 44443
No 440
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.16 E-value=22 Score=20.79 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=6.5
Q ss_pred HHHHHcCChHHHHHHHH
Q 004622 559 QFYQDLANSEKALECLQ 575 (741)
Q Consensus 559 ~~~~~~~~~~~A~~~~~ 575 (741)
..|.+.|++++|...|+
T Consensus 8 ~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFD 24 (31)
T ss_pred HHHHccchHHHHHHHHH
Confidence 33333333333333333
No 441
>PRK12798 chemotaxis protein; Reviewed
Probab=51.94 E-value=3.1e+02 Score=28.80 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=126.7
Q ss_pred HHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCC
Q 004622 406 QILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQ-ARAALGESVEAIQDLSKALEFEPNS 482 (741)
Q Consensus 406 ~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~ 482 (741)
.++..++. +.+.-..-|..-+-.|+..++.+.+...-.. .|.....+..|.. ......+...|+..|+.+--..|..
T Consensus 102 ~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGT 181 (421)
T PRK12798 102 KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGT 181 (421)
T ss_pred HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCch
Confidence 34444443 3555566677777788888888877664322 1222233333333 3345678889999999888888865
Q ss_pred H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc-cHHHH
Q 004622 483 A---DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---YTYLGLALSSIGEYKKAEEAHLKAIQL-DRN-FLEAW 554 (741)
Q Consensus 483 ~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~-~~~-~~~~~ 554 (741)
. -++..--.+....|+.++...+-.+.+.....++.+ +...+......++-. -...+...+.. +|. ....|
T Consensus 182 LvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lY 260 (421)
T PRK12798 182 LVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELY 260 (421)
T ss_pred HHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHH
Confidence 2 234444455578888888888888887776666533 333333343433222 12335555544 333 35578
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHCCChHHHHHHHHHh
Q 004622 555 GHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (741)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (741)
..++..-...|+.+-|...-++++.+... ...+.+..+....-..++++|++.+.+.
T Consensus 261 L~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 261 LRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 88888888889999888888888877532 2445555555555666777777777665
No 442
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.66 E-value=63 Score=35.92 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHH---HcCChHHHHHHHHHHHhhC-CCCH
Q 004622 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARA---ALGESVEAIQDLSKALEFE-PNSA 483 (741)
Q Consensus 414 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~---~~~~~~~A~~~~~~al~~~-p~~~ 483 (741)
.+++..++-..|....+|+.-++..+..-. -|+... +.+..+-++- .-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 367777888888888889887777666433 443222 1122222222 3467788888888777764 4446
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004622 484 DILHERGIVNFK---------FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (741)
Q Consensus 484 ~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 531 (741)
+.+...|++|-. .+..+.|+++|+++++..|..... .+++.++...|
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG 334 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence 677777777643 345567888888888877764322 33444444444
No 443
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=50.87 E-value=47 Score=19.82 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 004622 88 VIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (741)
Q Consensus 88 A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 116 (741)
.+.....++..+|++..++..+-.++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46678889999999998888776665543
No 444
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=50.81 E-value=90 Score=26.72 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhh
Q 004622 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRT 614 (741)
Q Consensus 564 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (741)
+|+-+.--+.+....+....++..+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334333333444433333334555555555555555555555555555443
No 445
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.70 E-value=32 Score=26.06 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=9.5
Q ss_pred hcCCHHHHHHHHHHHHh
Q 004622 48 SLRNWSKAIRILDSLLA 64 (741)
Q Consensus 48 ~~g~~~~Ai~~~~~al~ 64 (741)
+.|+|++|+.+|..||+
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 44555555555555554
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=2.7e+02 Score=27.49 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHH
Q 004622 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADI 485 (741)
Q Consensus 415 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~ 485 (741)
.+++.++|..|.+.++.+.+.+.+.+.++..-. ..+ ....+|.+|..+.-.++.++.....++...+- -..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 467777888888888888877777776654221 112 23455555555555556666666666654421 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 004622 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (741)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 515 (741)
-...|...+...+|.+|-..+..++.....
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 334566666677788888887777665433
No 447
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=49.11 E-value=1.7e+02 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 004622 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (741)
Q Consensus 429 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 460 (741)
+.....+.+++.++..++.++..+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 44444445555444444444444444444443
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.22 E-value=2.7e+02 Score=26.84 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cccHHHHHHHHHHHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAF-QRELEAAISDFTEAIQ 443 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~~l~ 443 (741)
++.+|....+.|+|++.+.++++++..+|.- .+-...++.+|-. .|....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4567888888899999999999998887753 3334444444432 3444555555544443
No 449
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.41 E-value=42 Score=20.04 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=10.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 004622 556 HLTQFYQDLANSEKALECLQQV 577 (741)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~a 577 (741)
.+-..|.+.|++++|.+.|.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 450
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=45.07 E-value=1.3e+02 Score=25.33 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=34.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 556 HLTQFYQDLANSEKALECLQQVLYIDKR---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
.+|....+.+++-.++-.|++|+.+..+ ..-...++|..+..+|+.+=.+++++-|-
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 3444555555555555555555543211 12345678888888888888888887664
No 451
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.99 E-value=1.3e+02 Score=22.80 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004622 384 RLSRGIAQVNEGKYASAISIFDQILK 409 (741)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~ 409 (741)
+...|.-+-..|++.+|+.+|+.+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555566666777766666665543
No 452
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=44.81 E-value=2e+02 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=16.8
Q ss_pred hhHHHhcCChhhHHHHHHHhhccCCCC
Q 004622 312 SSDSASLNDSNTNSESYSKSSISDNKS 338 (741)
Q Consensus 312 g~~~~~~~~~~~A~~~~~~a~~~~p~~ 338 (741)
+....-.|..++-++...+.....+-.
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~ 35 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIK 35 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCcc
Confidence 344555677788888888877765443
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.57 E-value=2.7e+02 Score=25.98 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=11.3
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC
Q 004622 459 RAALGESVEAIQDLSKALEFEPNS 482 (741)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~ 482 (741)
....|+++.|-+.|--.+...+-+
T Consensus 51 ~llr~d~~rA~Raf~lLiR~~~VD 74 (199)
T PF04090_consen 51 CLLRGDWDRAYRAFGLLIRCPEVD 74 (199)
T ss_pred HHHhccHHHHHHHHHHHHcCCCCC
Confidence 344455555555555444444333
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.35 E-value=3.9e+02 Score=27.85 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=10.3
Q ss_pred HcCChHHHHHHHHHHHhh
Q 004622 563 DLANSEKALECLQQVLYI 580 (741)
Q Consensus 563 ~~~~~~~A~~~~~~al~~ 580 (741)
..|+|+.|+..+-+++++
T Consensus 258 ~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 258 TQGRYDDAAARLYRALEL 275 (380)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 456666666555555543
No 455
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.15 E-value=81 Score=29.25 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 004622 399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (741)
Q Consensus 399 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 446 (741)
..++..++.+...|+ +.++..++.++...|+.++|.....++....|
T Consensus 129 ~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444555555564 66666666666666666666666666666666
No 456
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.57 E-value=19 Score=27.24 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHh
Q 004622 52 WSKAIRILDSLLA 64 (741)
Q Consensus 52 ~~~Ai~~~~~al~ 64 (741)
.++||.+.++|+.
T Consensus 3 l~kai~Lv~~A~~ 15 (75)
T cd02680 3 LERAHFLVTQAFD 15 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555553
No 457
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=42.26 E-value=40 Score=25.59 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhc
Q 004622 54 KAIRILDSLLAQ 65 (741)
Q Consensus 54 ~Ai~~~~~al~~ 65 (741)
+|+..+.+|++.
T Consensus 5 ~A~~l~~~Ave~ 16 (75)
T cd02677 5 QAAELIRLALEK 16 (75)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 458
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.16 E-value=1e+02 Score=29.44 Aligned_cols=27 Identities=7% Similarity=-0.174 Sum_probs=21.7
Q ss_pred hHHHhcCChhhHHHHHHHhhccCCCCc
Q 004622 313 SDSASLNDSNTNSESYSKSSISDNKSS 339 (741)
Q Consensus 313 ~~~~~~~~~~~A~~~~~~a~~~~p~~~ 339 (741)
...+..|+|+.|+.....+++.+-.-|
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~P 117 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMP 117 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCC
Confidence 356789999999999999998764433
No 459
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=41.77 E-value=64 Score=28.76 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=37.7
Q ss_pred hhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004622 3 KRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS 66 (741)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~ 66 (741)
|+++-|...||+-+.+-... +.+.......-..+.++++.|||+.|.++-...+...
T Consensus 64 kr~~~D~~KRL~iLfd~ln~-------g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~h 120 (157)
T PF07304_consen 64 KRVVDDIEKRLNILFDHLNN-------GKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTDH 120 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------T-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 45566777777777666432 2233333444488999999999999999988877644
No 460
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=40.03 E-value=68 Score=23.72 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 004622 46 LCSLRNWSKAIRILDSLLA 64 (741)
Q Consensus 46 ~~~~g~~~~Ai~~~~~al~ 64 (741)
+=+.|+|++|+.+|+++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3357788888888877765
No 461
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.75 E-value=50 Score=25.22 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=10.4
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 004622 46 LCSLRNWSKAIRILDSLLA 64 (741)
Q Consensus 46 ~~~~g~~~~Ai~~~~~al~ 64 (741)
+=+.|+|++|+.+|.++|+
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3345566666655555544
No 462
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.59 E-value=62 Score=24.65 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 004622 42 ELAKLCSLRNWSKAIRILDSLLA 64 (741)
Q Consensus 42 ~~~~~~~~g~~~~Ai~~~~~al~ 64 (741)
.+.++=+.|+|++|+.+|..+|+
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444456777777777777665
No 463
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.42 E-value=97 Score=34.87 Aligned_cols=108 Identities=25% Similarity=0.260 Sum_probs=83.2
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHH--cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004622 420 GRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAA--LGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (741)
Q Consensus 420 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (741)
.-+...++.+++..+.--|..++.+-|.+ .....+.+.++.. .|++..++....-++...|....++...+..|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 34778888899999888788888777743 3345566666655 46889999999999999999889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004622 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (741)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 527 (741)
...+.++-|++.+.-.....|.+..+........
T Consensus 138 ~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 138 EALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 9999999999987777788898865554444433
No 464
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.36 E-value=4.3e+02 Score=26.89 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=65.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHH
Q 004622 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605 (741)
Q Consensus 526 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 605 (741)
-+...|+...|...-.+ .++ .+...|.....++...++|++-..+... + ..|-.|.-...+....|+..+|.
T Consensus 186 ~li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s--k---KsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS--K---KSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C---CCCCChHHHHHHHHHCCCHHHHH
Confidence 34567777776665333 232 3466788888888899999876654322 2 23444566677778889999999
Q ss_pred HHHHHhhhhcCCchHHHHHHHHHHHHHhCCCHHHHHH
Q 004622 606 KDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLL 642 (741)
Q Consensus 606 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 642 (741)
.+..+ +.+ ......|...|++.+|..
T Consensus 258 ~yI~k---~~~--------~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 258 KYIPK---IPD--------EERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HHHHh---CCh--------HHHHHHHHHCCCHHHHHH
Confidence 88888 211 244567888999999884
No 465
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=39.01 E-value=3.5e+02 Score=26.81 Aligned_cols=135 Identities=11% Similarity=-0.031 Sum_probs=72.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHccc----HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 004622 388 GIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTA---RAFQRE----LEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (741)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~~~----~~~A~~~~~~~l~~~~~~~~~~~~la~~ 458 (741)
...++..++|++=...+.+......+ ..+..+..+.. ...... ...-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44567788888888888887654322 11111212111 111111 1135566677777888888888877777
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004622 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (741)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 534 (741)
+....=--.....- +.-...-+.....+ .+.|...+.+++.++|....+...+-.+-...|+.+
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~~~------~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAHQA------CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHHHH------HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 65421000000000 00112222222222 366778888888888888777777777666666654
No 466
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=38.14 E-value=76 Score=18.87 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 588 YHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
|..+..++.+.|+++.|...|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 467
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=38.07 E-value=4.3e+02 Score=26.54 Aligned_cols=184 Identities=11% Similarity=0.029 Sum_probs=93.8
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACV 510 (741)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (741)
++++++-....|+..++++..|...+..|+|..|-.++-....+.++ ...++...--.-+-+.+|+.|++-+.+.-
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444556777778888888888888888887766544443321 22222222222334567888887777765
Q ss_pred HhCCCC---H--HHHHHHH----HHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHc-CChHHHHH
Q 004622 511 KLDKEN---K--SAYTYLG----LALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDL-ANSEKALE 572 (741)
Q Consensus 511 ~~~p~~---~--~~~~~la----~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~-~~~~~A~~ 572 (741)
+.-.+. . ..+.... +.++-.=++.++...+-.++-..| ..|..+..++.+..-. .....+++
T Consensus 195 e~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lk 274 (432)
T KOG2758|consen 195 EYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLK 274 (432)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHH
Confidence 532111 1 1111111 111111122222222222221122 2244555666555544 55667777
Q ss_pred HHHHHHhhCc-ccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCc
Q 004622 573 CLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 573 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 618 (741)
.+-++++... ...+.-...-.+++-.-++++|...++++-+.-.++
T Consensus 275 dlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nD 321 (432)
T KOG2758|consen 275 DLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVND 321 (432)
T ss_pred HHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcc
Confidence 7777776532 111112233445666778889988888886654444
No 468
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=37.94 E-value=1.5e+02 Score=24.34 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 004622 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430 (741)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 430 (741)
...+..|...+..||+..|.+.+.++-+..+..+-.+..-+..-..+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3445677777888888888888888866655545555555555555543
No 469
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.50 E-value=6.7e+02 Score=28.55 Aligned_cols=178 Identities=15% Similarity=0.095 Sum_probs=79.0
Q ss_pred HcCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCh
Q 004622 393 NEGKYASAISIFDQILKED--PM----YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW-KRRGQARAALGES 465 (741)
Q Consensus 393 ~~g~~~~A~~~~~~al~~~--p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~la~~~~~~~~~ 465 (741)
..|+..+|.+++.-.+-.+ |. ..-+++.+|.++...|+- ..+++...++...+....+ ..||.-+..+|.-
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4677777777776655432 11 135667777776666554 6777777666554332221 1122222333322
Q ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622 466 VEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVE-DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (741)
Q Consensus 466 ~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 539 (741)
. .+.|++.-+.--.+ ..+-+.+|.+.....+. +|++ .+.-+-+..-+...--...|..+...|+-++|-.+
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~l 523 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPL 523 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHH
Confidence 1 12333332221111 12334445444444432 2333 22222221111112223345555556666666666
Q ss_pred HHHHHHhC-ccc-HHHHHHHHHHHHHcCChHHHHHHHH
Q 004622 540 HLKAIQLD-RNF-LEAWGHLTQFYQDLANSEKALECLQ 575 (741)
Q Consensus 540 ~~~al~~~-~~~-~~~~~~la~~~~~~~~~~~A~~~~~ 575 (741)
.++++.-. |-- ....+.++..|...|+...-...+.
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh 561 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLH 561 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhc
Confidence 66655432 110 1234556666666666443333333
No 470
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=36.86 E-value=2.2e+02 Score=25.00 Aligned_cols=38 Identities=11% Similarity=-0.091 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhhH
Q 004622 35 SAITARIELAKLCSLR-NWSKAIRILDSLLAQSYEIQDI 72 (741)
Q Consensus 35 ~~~~~~~~~~~~~~~g-~~~~Ai~~~~~al~~~~~~~~~ 72 (741)
..+.+-..+-.++..| ++.+|+..|-+||.+.+++..+
T Consensus 89 ~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 89 FFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 3444445556667777 8888888888888887666653
No 471
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=35.96 E-value=2e+02 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 004622 386 SRGIAQVNEGKYASAISIFDQIL 408 (741)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al 408 (741)
..|.-.-..|+|++|+.+|.+++
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444555555555554443
No 472
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=35.57 E-value=59 Score=24.71 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHH
Q 004622 117 GRKEEALSVWEKGY 130 (741)
Q Consensus 117 g~~~~A~~~~~~al 130 (741)
|++++|...|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666665554
No 473
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=35.12 E-value=4.4e+02 Score=25.76 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=100.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChHHHHH
Q 004622 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQ 470 (741)
Q Consensus 394 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~ 470 (741)
+-....|+..+...+......+.+....|.++-..| ......++++.. .+|.-. .+...+..+-+..+ -....
T Consensus 62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~--~~~~~ 137 (289)
T KOG0567|consen 62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDI--IDKIA 137 (289)
T ss_pred hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhc--ccccc
Confidence 344567778787777766666777778888888888 667777777777 555422 12222222211111 00000
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 004622 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (741)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 550 (741)
.-......+|.-+.. .+...+ ++..+ ++++.+......+..+.+.--.++|+..+-+.+..+ +
T Consensus 138 ~~~p~~SvdPa~p~~----------~ssv~~----lr~~l-ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--S 200 (289)
T KOG0567|consen 138 NSSPYISVDPAPPAN----------LSSVHE----LRAEL-LDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--S 200 (289)
T ss_pred ccCccccCCCCCccc----------cccHHH----HHHHH-HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--h
Confidence 001112233332200 001111 11111 122333333345555555555577777766666543 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhh
Q 004622 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSR 613 (741)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (741)
.-.....|.++-+++. ..|+..+.+.+.....++-....-+.++...++ +++++.+++.+.
T Consensus 201 alfrhEvAfVfGQl~s-~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQS-PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-EDCVEVLKEYLG 261 (289)
T ss_pred HHHHHHHHHHHhhccc-hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-HHHHHHHHHHcC
Confidence 3444445555544443 567777777776666666666666666666665 345666665543
No 474
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.91 E-value=4.1e+02 Score=29.43 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=66.5
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CChhhHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 004622 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (741)
Q Consensus 47 ~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 125 (741)
-+++..++|...-+.-+.-. ......+.+|..+-..+..++|-..|++.+..+|+ .+++..+.-+...|-..+|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34455556655555544444 44555788899999999999999999999999999 6899999999999999999888
Q ss_pred HHHHHHhcCCC
Q 004622 126 WEKGYEHALHQ 136 (741)
Q Consensus 126 ~~~al~l~p~~ 136 (741)
++ ++.|.-
T Consensus 97 ~~---~~~~~~ 104 (578)
T PRK15490 97 LK---KVSNGV 104 (578)
T ss_pred HH---HhCccH
Confidence 88 456653
No 475
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.23 E-value=4.9e+02 Score=26.04 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhcHHHHHH-HHHHHHHhC--CCC
Q 004622 26 LVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIR-DCDKALQLD--PTL 102 (741)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~--p~~ 102 (741)
++...............+..++..|||..|++.+...-..-.....+.-....-.++.+...-+. .++..+..- -=+
T Consensus 117 ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd 196 (291)
T PF10475_consen 117 LLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFD 196 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333333333555677888999999999999998886643211111111112222222222111 111111110 123
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004622 103 LQAYILKGCAFSALGRKEEALSVWEKG 129 (741)
Q Consensus 103 ~~a~~~~g~~~~~~g~~~~A~~~~~~a 129 (741)
+..|..+-.+|..+|+...+.+-+...
T Consensus 197 ~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 197 PDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456778888899999988888655554
No 476
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=34.22 E-value=5e+02 Score=26.15 Aligned_cols=169 Identities=11% Similarity=-0.038 Sum_probs=96.6
Q ss_pred cCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHHHhhc----
Q 004622 300 QTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISK---- 375 (741)
Q Consensus 300 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 375 (741)
...-.++....+-..+ ..+++.+.++..++.+...|--.+.....+.++.+.| +..+...........+.++..
T Consensus 95 L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L 172 (301)
T TIGR03362 95 LAPPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLEL 172 (301)
T ss_pred CCCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhc
Confidence 3344455555555544 6778899999999999999999999999999999988 455555444444434444322
Q ss_pred ----cCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 004622 376 ----SKSISV---DFRLSRGIAQVNEGKYASAISIFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (741)
Q Consensus 376 ----~~~~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 446 (741)
..|.-. ..|+.- ..+.-..+-. ......+ .+......-+......+..+.|+..++..+...+
T Consensus 173 ~F~DGtPFad~~T~~WL~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~ 244 (301)
T TIGR03362 173 KFSDGTPFADDETRAWLAQ-----HATRSNAASV---APVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAR 244 (301)
T ss_pred ccCCCCCCCCHHHHHHHHh-----cccccccccc---cccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCC
Confidence 111111 111110 0000000000 0000001 1122233346667778888888888887654333
Q ss_pred Cc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622 447 SA---GEAWKRRGQARAALGESVEAIQDLSKALEF 478 (741)
Q Consensus 447 ~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 478 (741)
.. ......++.++...|..+-|...|....+.
T Consensus 245 s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 245 EPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 233456788888888888888888887654
No 477
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=33.87 E-value=99 Score=27.11 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCChH
Q 004622 106 YILKGCAFSALG-RKEEALSVWEKGYEHALHQSA 138 (741)
Q Consensus 106 ~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~ 138 (741)
-+.+|..+...| +.++|..+|-+||...|+...
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 445999999999 999999999999999999877
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.98 E-value=5e+02 Score=25.73 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q 004622 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SAD---ILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SA 519 (741)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 519 (741)
.+++.++|..|.+.++.+.+.+++.+.++..-. ..+ ....+|.+|..+.-.++.++.....++...+-. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 567889999999999999999888887765421 123 345566677666666677777777776544322 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 004622 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (741)
Q Consensus 520 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 549 (741)
....|.......++.+|-..+...+.....
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 344567777788899998888887765543
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=32.54 E-value=6.2e+02 Score=26.68 Aligned_cols=232 Identities=13% Similarity=-0.011 Sum_probs=144.4
Q ss_pred hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHH
Q 004622 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILH 487 (741)
Q Consensus 410 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 487 (741)
.+|.|..+ +.+|...|-.-..+ +.++..++. +.+.-..-|..-+-.|+..++.+.+...-... |...-.+.
T Consensus 79 ~dprNv~A----a~iy~lSGGnP~vl---r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~l 151 (421)
T PRK12798 79 DDPRNVDA----ALIYLLSGGNPATL---RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYL 151 (421)
T ss_pred CCccchhH----HHhhHhcCCCHHHH---HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHH
Confidence 45555443 33444444333333 333444432 44455555666677899999998887553322 22233333
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH---HHHHHHH
Q 004622 488 ERG-IVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA---WGHLTQF 560 (741)
Q Consensus 488 ~la-~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~ 560 (741)
.|. -..+...+..+|+..|..+--..|... .++-.-..+....|+.++...+-.+.+.....++.+ +...+..
T Consensus 152 aLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 152 ALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 333 334556789999999999998889874 334444455578899999999988888887766543 3344444
Q ss_pred HHHcCChHHHHHHHHHHHhh-Ccc-cHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCch--HHHHHHHHHHHHHhCCC
Q 004622 561 YQDLANSEKALECLQQVLYI-DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL--IWNLTRWRNLCFNAWPF 636 (741)
Q Consensus 561 ~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~la~~~~~~g~ 636 (741)
....++-. -...+...+.. +|. ...+|..++..-.-.|+.+-|...-++++.+..... .....+..+-.-.-..+
T Consensus 232 ~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~ 310 (421)
T PRK12798 232 VVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD 310 (421)
T ss_pred HHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc
Confidence 44444322 22335555544 443 366889999999999999999999999988753331 12224445555566677
Q ss_pred HHHHHHHHHhhcc
Q 004622 637 IRRRLLCTRLLKS 649 (741)
Q Consensus 637 ~~~A~~~~~~~~~ 649 (741)
+++|+.....+..
T Consensus 311 ~~~al~~L~~I~~ 323 (421)
T PRK12798 311 AESALEELSQIDR 323 (421)
T ss_pred HHHHHHHHhcCCh
Confidence 8888866665543
No 480
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=32.04 E-value=95 Score=22.94 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 107 ILKGCAFSALGRKEEALSVWEKGY 130 (741)
Q Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al 130 (741)
...|.-.-..|++++|+..|..++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444555666666666666554
No 481
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=31.86 E-value=6.2e+02 Score=26.53 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 521 TYLGLALSSIGEYKKAEEAHLKAI 544 (741)
Q Consensus 521 ~~la~~~~~~~~~~~A~~~~~~al 544 (741)
+..|.+|..+++|.+|+..|..++
T Consensus 276 Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444443
No 482
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=31.63 E-value=16 Score=40.28 Aligned_cols=101 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHH--HHhCCC-cHHH
Q 004622 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILK--EDPM-YPEALIGRGTARAFQRELEAAISDFTEA--IQSNPS-AGEA 451 (741)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~--l~~~~~-~~~~ 451 (741)
+......+..+..++..|++..|...+.++-. ..|. ........+.+....|+++.|+..+... ..+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 44556777888999999999999999988762 2332 2456677888999999999999998741 111111 2334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 004622 452 WKRRGQARAALGESVEAIQDLSKALEF 478 (741)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~ 478 (741)
+...+.++...|++-+|...+-.+-.+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 566788888888888887766554443
No 483
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=31.30 E-value=5.3e+02 Score=25.55 Aligned_cols=134 Identities=13% Similarity=-0.014 Sum_probs=72.6
Q ss_pred HHHHHcccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHH---HHcCC----hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 004622 423 TARAFQRELEAAISDFTEAIQSNPS--AGEAWKRRGQAR---AALGE----SVEAIQDLSKALEFEPNSADILHERGIVN 493 (741)
Q Consensus 423 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~---~~~~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (741)
..+...++|++=-..+.+......+ ..+..+..+... ..... ...-...++.=++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3456677777777777766543221 111111111111 11111 11345566666777888888888777766
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Q 004622 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (741)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 568 (741)
....=--..... .+......+..... -.+.|...+.+++.++|....+...+-.+-...|...
T Consensus 88 ~~~Aw~~RG~~~------A~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 88 VHRAWDIRGSGY------ASTVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHccch------hcccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 542100000000 01111222222222 2478999999999999999998888888877777754
No 484
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.49 E-value=3.9e+02 Score=29.61 Aligned_cols=69 Identities=7% Similarity=0.004 Sum_probs=56.3
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 004622 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440 (741)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 440 (741)
.+.-......+....+..+..+-..+..++|-.+|++.+..+|+ ..++..+..+.+.|-...|...+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 31 IDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred HHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 33344455566677888899999999999999999999999998 6778888888999988888888773
No 485
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=30.33 E-value=94 Score=23.53 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=10.7
Q ss_pred hcCCHHHHHHHHHHHHh
Q 004622 48 SLRNWSKAIRILDSLLA 64 (741)
Q Consensus 48 ~~g~~~~Ai~~~~~al~ 64 (741)
+.|+|++|+.+|.++++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666666654
No 486
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.14 E-value=1.1e+03 Score=28.72 Aligned_cols=253 Identities=12% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 004622 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472 (741)
Q Consensus 395 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 472 (741)
.....-.+..+.++...+.+ .....+-..|.+.+ ..++|+........ .+....+-..+-.+++ +..+-..|
T Consensus 771 ~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~-~~~~~~ad~al~hll~----Lvdvn~lf 844 (1265)
T KOG1920|consen 771 NKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL-AQVAVSADEALKHLLF----LVDVNELF 844 (1265)
T ss_pred hHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh-cccchhHHHHHHHHHh----hccHHHHH
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 004622 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (741)
Q Consensus 473 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 552 (741)
+.|+..+.-+ ..+-.+...+.++.+=+.++++.-++.+. ...-.+-..+++|+.|+..+.++= ..
T Consensus 845 n~ALgtYDl~----Lal~VAq~SqkDPkEyLP~L~el~~m~~~-----~rkF~ID~~L~ry~~AL~hLs~~~------~~ 909 (1265)
T KOG1920|consen 845 NSALGTYDLD----LALLVAQKSQKDPKEYLPFLNELKKMETL-----LRKFKIDDYLKRYEDALSHLSECG------ET 909 (1265)
T ss_pred HhhhcccchH----HHHHHHHHhccChHHHHHHHHHHhhchhh-----hhheeHHHHHHHHHHHHHHHHHcC------cc
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCcccHHHHHHHHHHHHHCCChHHHHHHHHHhhhhcCCchHHHHHHHHHHHHH
Q 004622 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFN 632 (741)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 632 (741)
.+-..-..-.+.|-|.+|+.+|.--.+.. ...+...|.-+...+.+++|.-.|+++=++...- .+|.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~---k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl----------~a~~ 976 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQ---KVIYEAYADHLREELMSDEAALMYERCGKLEKAL----------KAYK 976 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHH---HHHHHHHHHHHHHhccccHHHHHHHHhccHHHHH----------HHHH
Q ss_pred hCCCHHHHHHHHHhhccCCcccc---hhhHHHHhcCCCchhHhhhHHHHHhh
Q 004622 633 AWPFIRRRLLCTRLLKSTVSFAG---LTLMEILIPSSRNIGAKDCIPRMYVK 681 (741)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (741)
..|++.+|+..-..+..+..... ..|+..+...+++-+|-..+...+..
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
No 487
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=29.91 E-value=1.1e+02 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 004622 44 AKLCSLRNWSKAIRILDSLLA 64 (741)
Q Consensus 44 ~~~~~~g~~~~Ai~~~~~al~ 64 (741)
.+.=..|+|++|+.+|.+|++
T Consensus 14 v~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333456666666666666654
No 488
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.76 E-value=1e+02 Score=32.42 Aligned_cols=28 Identities=11% Similarity=-0.142 Sum_probs=23.1
Q ss_pred HHhhhhHHHhcCChhhHHHHHHHhhccC
Q 004622 308 HDKLSSDSASLNDSNTNSESYSKSSISD 335 (741)
Q Consensus 308 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 335 (741)
..+.|..++..|+|.+|+..|+.++..-
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4456999999999999999999998753
No 489
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=29.23 E-value=1.3e+02 Score=18.09 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 004622 104 QAYILKGCAFSAL----GRKEEALSVWEKGYE 131 (741)
Q Consensus 104 ~a~~~~g~~~~~~----g~~~~A~~~~~~al~ 131 (741)
.+.+.+|..|..- .+...|...|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 4556666666532 266667766666644
No 490
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=6.2e+02 Score=25.63 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q 004622 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---S---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SA 519 (741)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 519 (741)
.+++...|..|.+.|+.+.|.+.+.+..+..-. . .-....+|..|....-..+.++-.+..++...+-. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 356667777777777777777766665543211 1 12334455555544434444444444444322211 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 004622 520 YTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (741)
Q Consensus 520 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 547 (741)
....|.......++.+|-..|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2334555556677777777777666544
No 491
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.02 E-value=2e+02 Score=29.93 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHhCCCChh-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004622 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSVWEKGY 130 (741)
Q Consensus 73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~~g~~~~~~g~~~~A~~~~~~al 130 (741)
.++-+.+.-+|++ +| -...+.++|...- .-+..|-+|+.+|++.+|++.|-.+|
T Consensus 239 ~GLlR~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4555677778994 44 4566778876543 22779999999999999999998875
No 492
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=28.92 E-value=3.8e+02 Score=23.16 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----ccCChhh--HHHHHHHHHhhhcHHHHHHHHHHHH
Q 004622 37 ITARIELAKLCSLRNWSKAIRILDSLLA----QSYEIQD--ICNRAFCYSQLELHKHVIRDCDKAL 96 (741)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~Ai~~~~~al~----~~~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al 96 (741)
+.+|.++-+.+..||.+.|++...+--. .+++... +...-.-.++.|+..+|+...++-+
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4567888899999999999999887632 2222222 2233334555699999999999855
No 493
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.74 E-value=1e+03 Score=28.07 Aligned_cols=53 Identities=11% Similarity=-0.061 Sum_probs=35.5
Q ss_pred ccccCCCchHHHHhhhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHH
Q 004622 297 HGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLS 349 (741)
Q Consensus 297 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 349 (741)
.++...+-++....+--.+..+=.-++|.++|+......|+....+.....-+
T Consensus 1067 ~k~~~e~~~eairDlqv~~l~kl~~e~~~k~~~~l~s~ypd~lpll~~~l~kl 1119 (1304)
T KOG1114|consen 1067 DKKLGEECAEAIRDLQVSWLSKLADEEAEKIYNYLKSSYPDYLPLLEVRLAKL 1119 (1304)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcccchHHHHHHHHh
Confidence 33444455566666666666666777899999999999997666555444333
No 494
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.52 E-value=2.7e+02 Score=29.20 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHhh
Q 004622 587 AYHLRGLLLHGLGQHKKAIKDLSSGS 612 (741)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al 612 (741)
.+...|.+.+..|+-++|.++++.+.
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 35566888888888888888888874
No 495
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.42 E-value=3.4e+02 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.100 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 004622 452 WKRRGQARAALGESVEAIQDLSKALE 477 (741)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~ 477 (741)
++..|.+.+....|++|+.++-.|-+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe 191 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADE 191 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44556666677777777777665543
No 496
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=28.15 E-value=19 Score=39.55 Aligned_cols=112 Identities=18% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHH--HhCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHH-
Q 004622 401 ISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI--QSNPS-AGEAWKRRGQARAALGESVEAIQDLSKA- 475 (741)
Q Consensus 401 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l--~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a- 475 (741)
..++.++-...+. ....+..-+..+...|++..|...+.+.- .+.+. ........|.+....|+++.|+..+...
T Consensus 9 ~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~ 88 (536)
T PF04348_consen 9 EQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQD 88 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCC
Confidence 3344444433332 23455666788999999999999988765 22332 2345567788888999999999998741
Q ss_pred -HhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 004622 476 -LEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 476 -l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
..+.+. ....+...+.++...|++-+|...+-..-..
T Consensus 89 ~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 89 LWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------------------
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 111111 2345666788888888888887766554443
No 497
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.04 E-value=1.1e+02 Score=23.25 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=12.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 004622 109 KGCAFSALGRKEEALSVWEKGY 130 (741)
Q Consensus 109 ~g~~~~~~g~~~~A~~~~~~al 130 (741)
.|.-+-..|++++|+..|..++
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3334445566666666666654
No 498
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.94 E-value=4.1e+02 Score=25.31 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=35.0
Q ss_pred HHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccCCh----hhHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 004622 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLA--QSYEI----QDICNRAFCYSQLELHKHVIRDCDKALQ 97 (741)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~--~~~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~ 97 (741)
...+.+.+|..+-++.+.|+.+.||+..++.-. ++.|. .....+..=..+.|..++|+..++.-+.
T Consensus 60 ~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 60 IDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred CchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 445556666666666666666666666555422 22221 1123333444555666666666655444
No 499
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.79 E-value=9e+02 Score=28.24 Aligned_cols=186 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhhHHHhcCChhhHHHHHHHhhccCCCCchhHHHHHHHHHchhcHHHHHHHHHHhHHHHHH---HhhccCCcc-------
Q 004622 311 LSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVT---RISKSKSIS------- 380 (741)
Q Consensus 311 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~------- 380 (741)
+.-.+...|.|+.|..++.+-+-.. +-.........+|.....+-.+.. +.. .........
T Consensus 912 L~adhvaAGsf~tA~~lL~dqvgvv-~f~p~Kt~fl~iy~~sR~~l~~~~--------~~~~~~~~~R~~se~~~~~~~P 982 (1202)
T KOG0292|consen 912 LAADHVAAGSFETAMRLLHDQVGVV-NFGPLKTHFLKIYAGSRTYLRATP--------CLPVSLYPVRNWSETSSKQGLP 982 (1202)
T ss_pred chhhhhhcCchHHHHHHHHhhhcce-ecccHHhhhhhhccccceeccCCC--------CcccccccccccccchhhccCC
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhCCCCHHHHHHHHHHHH------------Hccc
Q 004622 381 --------VDFRLSRGIAQVNEGKYASAISIFDQIL----------KEDPMYPEALIGRGTARA------------FQRE 430 (741)
Q Consensus 381 --------~~~~~~~a~~~~~~g~~~~A~~~~~~al----------~~~p~~~~~~~~la~~~~------------~~~~ 430 (741)
..-.+..|..+...|++.+|++.|+.++ +.+.....-+...+.-|. ..+.
T Consensus 983 ~v~~~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~ 1062 (1202)
T KOG0292|consen 983 AVGFKLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPN 1062 (1202)
T ss_pred cccccHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCch
Q ss_pred HHHH--HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004622 431 LEAA--ISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (741)
Q Consensus 431 ~~~A--~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 505 (741)
.+.+ +..|-.-..+.|-+ ..++..--..+++.+++..|.....+.+++.|..+.+-...-..-....+..+|.++
T Consensus 1063 ~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~l 1140 (1202)
T KOG0292|consen 1063 LEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYEL 1140 (1202)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCccccccc
No 500
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.67 E-value=1.2e+02 Score=23.42 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=14.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004622 110 GCAFSALGRKEEALSVWEKGYE 131 (741)
Q Consensus 110 g~~~~~~g~~~~A~~~~~~al~ 131 (741)
|..+-..|+.++|+..|++++.
T Consensus 15 aL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 15 ALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HhhhhhcCCHHHHHHHHHHHHH
Confidence 3333444778888888888753
Done!