Query 004622
Match_columns 741
No_of_seqs 974 out of 5235
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 18:36:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004622.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1919-1923//hhsearch_pdb/004622hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 321.7 49.8 382 43-636 6-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 321.7 49.5 382 73-666 3-387 (388)
3 2xpi_A Anaphase-promoting comp 1.0 1 1 321.4 45.9 483 39-681 87-579 (597)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 319.1 50.4 480 6-632 90-595 (597)
5 2gw1_A Mitochondrial precursor 1.0 1 1 302.8 45.6 458 39-622 9-485 (514)
6 3fp2_A TPR repeat-containing p 1.0 1 1 299.5 41.8 447 35-618 24-495 (537)
7 2gw1_A Mitochondrial precursor 1.0 1 1 291.1 39.2 413 68-652 5-480 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 288.4 38.4 450 54-652 5-493 (537)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 272.4 44.8 391 53-641 9-445 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 262.0 42.3 377 41-603 31-443 (450)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=321.71 Aligned_cols=382 Identities=16% Similarity=0.135 Sum_probs=273.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 999992189999999999998043-7724598799999960249999999999998499974599999999998699999
Q 004622 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (741)
Q Consensus 43 ~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 121 (741)
+..++..|+|++|+..|.+++..+ .+...+..++.++...|++++|+..+++++..+|.++.+++.+|.++...|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99998779999999999999984978899999999999986899999999999976197866999999999987799999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 99999999974599959999999999999997300000136676775410121112356685301221015887534557
Q 004622 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (741)
Q Consensus 122 A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (741)
|+..|++++.++|++..
T Consensus 86 A~~~~~~al~~~p~~~~--------------------------------------------------------------- 102 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFID--------------------------------------------------------------- 102 (388)
T ss_dssp HHHHHHHHHHHCTTCHH---------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCHHH---------------------------------------------------------------
T ss_conf 99999999874965399---------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77754200012678998987787422149998884345655676410001359999899988777775222366899866
Q 004622 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (741)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (741)
T Consensus 103 -------------------------------------------------------------------------------- 102 (388)
T 1w3b_A 103 -------------------------------------------------------------------------------- 102 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHH
Q ss_conf 55789877765422224567886478985244787249910489999986500799800699999999713308997899
Q 004622 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (741)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~ 361 (741)
.+..+|..+...|++++|+..|.+++..+|++...
T Consensus 103 -------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------- 137 (388)
T 1w3b_A 103 -------------------------GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV-------------------- 137 (388)
T ss_dssp -------------------------HHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH--------------------
T ss_pred -------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH--------------------
T ss_conf -------------------------99999999998589999999999999759896899--------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99758899987310488539999999999998199999999999999969998999999999999823699999999999
Q 004622 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (741)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 441 (741)
+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 138 ----------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 138 ----------------------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp ----------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ----------------------9999999998468999999999998729897899999999999859999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 98199909999999999998399199999999998219999999999999999759999999999999971789999999
Q 004622 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (741)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 521 (741)
+..+|+...++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++..+|.++.++.
T Consensus 196 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 85598867999999999998578999999999998529687899999999999868899999999999864999889999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999998199999999999999718040999999999999918929999999999931855299999999999988995
Q 004622 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (741)
Q Consensus 522 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 601 (741)
.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999998699799999999998649444999999999999848999999999999860987399997799999986888
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999846304984389999999999985989
Q 004622 602 KKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPF 636 (741)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~ 636 (741)
++|+..|+++++.+|++ ... +..+|.++..+|+
T Consensus 356 ~~A~~~~~~a~~~~p~~-~~a-~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 356 QEALMHYKEAIRISPTF-ADA-YSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTCTTC-HHH-HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCC-HHH-HHHHHHHHHHCCC
T ss_conf 99999999998619997-899-9859999987459
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=321.68 Aligned_cols=382 Identities=16% Similarity=0.120 Sum_probs=316.1
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 87999999602499999999999984999745999999999986999999999999997459995999999999999999
Q 004622 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152 (741)
Q Consensus 73 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 152 (741)
..+|..+++.|++++|+..+++++..+|++..++..+|.++...|++++|...++++++.+|.+..
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~-------------- 68 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE-------------- 68 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH--------------
T ss_conf 557999987799999999999999849788999999999999868999999999999761978669--------------
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 73000001366767754101211123566853012210158875345577775420001267899898778742214999
Q 004622 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGS 232 (741)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (741)
T Consensus 69 -------------------------------------------------------------------------------- 68 (388)
T 1w3b_A 69 -------------------------------------------------------------------------------- 68 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88843456556764100013599998999887777752223668998665578987776542222456788647898524
Q 004622 233 SVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLS 312 (741)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 312 (741)
.+..+|
T Consensus 69 --------------------------------------------------------------------------~~~~lg 74 (388)
T 1w3b_A 69 --------------------------------------------------------------------------AYSNLG 74 (388)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
T ss_conf --------------------------------------------------------------------------999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 47872499104899999865007998006999999997133089978999975889998731048853999999999999
Q 004622 313 SDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV 392 (741)
Q Consensus 313 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 392 (741)
..+...|++++|+..|++++..+|++ ...+..+|..+.
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------------~~~~~~l~~~~~ 112 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPDF------------------------------------------IDGYINLAAALV 112 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTC------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCH------------------------------------------HHHHHHHHHHHH
T ss_conf 99987799999999999998749653------------------------------------------999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 81999999999999999699989999999999998236999999999999819990999999999999839919999999
Q 004622 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472 (741)
Q Consensus 393 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (741)
..|++++|+..|++++..+|+...++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 85899999999999997598968999999999998468999999999998729897899999999999859999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99982199999999999999997599999999999999717899999999999999819999999999999971804099
Q 004622 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (741)
Q Consensus 473 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 552 (741)
++++..+|++..++..+|.++...|++++|+..+.+++..+|++..++..+|.++...|++++|+..+++++...|.++.
T Consensus 193 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 272 (388)
T 1w3b_A 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99985598867999999999998578999999999998529687899999999999868899999999999864999889
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999189299999999999318552999999999999889959999999984630498438999999999998
Q 004622 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFN 632 (741)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 632 (741)
++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++ ... +..+|.++.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~-~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAA-HSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHH-HHHHHHHHH
T ss_conf 999999999986997999999999986494449999999999998489999999999998609873-999-977999999
Q ss_pred HCCCHHHHHHHHHHHCCCCC---CCCHHHHHHHHCCC
Q ss_conf 59898999998884015775---21103689871089
Q 004622 633 AWPFIRRRLLCTRLLKSTVS---FAGLTLMEILIPSS 666 (741)
Q Consensus 633 ~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g 666 (741)
..|++++|+..++......| .++..++..+...|
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 8688899999999998619997899985999998745
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=321.40 Aligned_cols=483 Identities=11% Similarity=-0.021 Sum_probs=270.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999921899999999999980437724598799999960249999999999998499974599999999998699
Q 004622 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (741)
Q Consensus 39 ~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 118 (741)
-...+..++..|++++|+..|.+++...++...+..++.+|...|++++|+..+++++.. |.++.++..+|.+|...|+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 999999998745834799999999960899357999999999747699999999987335-4565089999999998866
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 99999999999974599959999999999999997300000136676775410121112356685301221015887534
Q 004622 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (741)
Q Consensus 119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (741)
+++|+..|++ ..|.... .... ..
T Consensus 166 ~~~A~~~~~~---~~~~~~~-~~~~---------------------------------------------~~-------- 188 (597)
T 2xpi_A 166 WQGALNLLGE---TNPFRKD-EKNA---------------------------------------------NK-------- 188 (597)
T ss_dssp HHHHHHHHCS---SCTTC--------------------------------------------------------------
T ss_pred HHHHHHHHHC---CCCCCCC-CCCC---------------------------------------------CC--------
T ss_conf 9999999842---4886322-3234---------------------------------------------33--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55777754200012678998987787422149998884345655676410001359999899988777775222366899
Q 004622 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (741)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (741)
. .
T Consensus 189 ------------------------~----~-------------------------------------------------- 190 (597)
T 2xpi_A 189 ------------------------L----L-------------------------------------------------- 190 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------C----C--------------------------------------------------
T ss_conf ------------------------4----3--------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHH
Q ss_conf 86655789877765422224567886478985244787249910489999986500799800699999999713308997
Q 004622 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (741)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a 358 (741)
............+..+|..+.+.|++++|+..|++++..+|.+...+..++.++...+.....
T Consensus 191 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 191 -----------------MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp -----------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred -----------------CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf -----------------211235125899999889999839989999999999972932569999999850346156789
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 89999758899987310488-53999999999999819999999999999996999899999999999982369999999
Q 004622 359 SNEAKRNKKFCVTRISKSKS-ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD 437 (741)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 437 (741)
... .+.+.......+ .....+..++..+...|++++|+..|++++.. |.+..++..++.++...|++++|+..
T Consensus 254 ~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 254 LVL-----KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHH-----HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHH-----HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 998-----657742344308899999999999980731399999999876438-83099999999999984689999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 99999819990999999999999839919999999999821999999999999999975999999999999997178999
Q 004622 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (741)
Q Consensus 438 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 517 (741)
|++++...|.+..++..++.++...|++++|+..+++++...|.+..++..+|.+|...|++++|+..|+++++..|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 407 (597)
T 2xpi_A 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG 407 (597)
T ss_dssp HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999729553799999999999827777999999999851835479999999999983569999999999987297778
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999819999999999999971804099999999999991892999999999993185529999999999998
Q 004622 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (741)
Q Consensus 518 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (741)
.++..++.++...|++++|+..|++++...|.+...+..++.++...|++++|+..|++++...|.++.++..+|.++..
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999757779999999999986813438999999999985799999999999998488876799999999998
Q ss_pred CCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC---CCCCCCHHHHHHHHCCCCC
Q ss_conf 89959999999984630------49843899999999999859898999998884015---7752110368987108990
Q 004622 598 LGQHKKAIKDLSSGSRT------MMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKS---TVSFAGLTLMEILIPSSRN 668 (741)
Q Consensus 598 ~g~~~~A~~~~~~al~~------~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 668 (741)
.|++++|+..|+++++. +|.+.... +..+|.++...|++++|+..++.+.. ..+..+..++..+...|++
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAAT-WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH
T ss_conf 1899999999999998532345453549999-999999999804799999999999973899738999999999981789
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1375367898764
Q 004622 669 IGAKDCIPRMYVK 681 (741)
Q Consensus 669 ~~A~~~~~~~~~~ 681 (741)
++|...++.+...
T Consensus 567 ~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 567 GLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999720
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=319.06 Aligned_cols=480 Identities=14% Similarity=0.095 Sum_probs=393.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCH
Q ss_conf 53788774221033443333410989999739999999999921899999999999980437724598799999960249
Q 004622 6 LLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELH 85 (741)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~ 85 (741)
+.....+.+...+++....++.++.+.. ...-..+.-++..|++++|+..|.+++...++...+..++.+|.+.|++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDITGNP---NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999987458347999999999608993---5799999999974769999999998733545650899999999988669
Q ss_pred HHHHHHHHHHHHHCCCC-------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999999849997-------------------45999999999986999999999999997459995999999999
Q 004622 86 KHVIRDCDKALQLDPTL-------------------LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146 (741)
Q Consensus 86 ~~A~~~~~~al~~~p~~-------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 146 (741)
++|+..+++ ..|.. ..+++.+|.+|...|++++|+..|+++++.+|++.. +...+..
T Consensus 167 ~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~ 242 (597)
T 2xpi_A 167 QGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE-AFDQLVS 242 (597)
T ss_dssp HHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHH
T ss_pred HHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_conf 999999842---488632232343343211235125899999889999839989999999999972932569-9999998
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999973000001366767754101211123566853012210158875345577775420001267899898778742
Q 004622 147 EELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSD 226 (741)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (741)
.......... .....+.. .. .
T Consensus 243 ~~~~~~~~~~-----------------~~~~~l~~-------~~--------------------------------~--- 263 (597)
T 2xpi_A 243 NHLLTADEEW-----------------DLVLKLNY-------ST--------------------------------Y--- 263 (597)
T ss_dssp TTCSCHHHHH-----------------HHHHHSCT-------HH--------------------------------H---
T ss_pred HHCCCCHHHH-----------------HHHHHCCC-------CC--------------------------------C---
T ss_conf 5034615678-----------------99986577-------42--------------------------------3---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 21499988843456556764100013599998999887777752223668998665578987776542222456788647
Q 004622 227 EAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHD 306 (741)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (741)
. .........
T Consensus 264 -~---------------------------------------------------------------------~~~~~~~~~ 273 (597)
T 2xpi_A 264 -S---------------------------------------------------------------------KEDAAFLRS 273 (597)
T ss_dssp -H---------------------------------------------------------------------GGGHHHHHH
T ss_pred -C---------------------------------------------------------------------CCHHHHHHH
T ss_conf -4---------------------------------------------------------------------430889999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 89852447872499104899999865007998006999999997133089978999975889998731048853999999
Q 004622 307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLS 386 (741)
Q Consensus 307 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (741)
....++..+.+.|++++|+..|++++.. |.+...+..++..+...|++++|.. .+..+....|.+...+..
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~~~~ 344 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLA--------ITTKILEIDPYNLDVYPL 344 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCCTTHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHH--------HHHHHHHCCCCCHHHHHH
T ss_conf 9999999980731399999999876438-8309999999999998468999999--------999999729553799999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999981999999999999999699989999999999998236999999999999819990999999999999839919
Q 004622 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (741)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (741)
++.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999982777799999999985183547999999999998356999999999998729777899999999999757779
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999982199999999999999997599999999999999717899999999999999819999999999999971
Q 004622 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (741)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 546 (741)
+|+..+++++...|.+..++..++.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++.
T Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999998681343899999999998579999999999999848887679999999999818999999999999985
Q ss_pred ------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf ------8040-999999999999918929999999999931855299999999999988995999999998463049843
Q 004622 547 ------DRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHL 619 (741)
Q Consensus 547 ------~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (741)
.|+. ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|...|+++++++|++
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~- 583 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE- 583 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC-
T ss_conf 3234545354999999999999980479999999999997389973899999999998178999999999997208887-
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999998
Q 004622 620 IWNLTRWRNLCFN 632 (741)
Q Consensus 620 ~~~~~~~la~~~~ 632 (741)
... +..++.+|.
T Consensus 584 ~~~-~~~l~~~~~ 595 (597)
T 2xpi_A 584 IMA-SDLLKRALE 595 (597)
T ss_dssp HHH-HHHHHHTTC
T ss_pred HHH-HHHHHHHHH
T ss_conf 489-999999874
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=302.78 Aligned_cols=458 Identities=14% Similarity=0.102 Sum_probs=353.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999921899999999999980437724598799999960249999999999998499974599999999998699
Q 004622 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (741)
Q Consensus 39 ~~~~~~~~~~~g~~~~Ai~~~~~al~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 118 (741)
-...+..++..|+|++|+..|++++..+|++..+.++|.++.++|++++|+..++++++.+|+++.+++.+|.++..+|+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99987899986027899999999985592278998688999988549999999987760693789999988899998766
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 99999999999974599959999999999999997300000136676775410121112356685301221015887534
Q 004622 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (741)
Q Consensus 119 ~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (741)
+++|+..|++++..+|.+.......+.............. .+..+... ...+......
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~----~~~~~~~~~~--------- 146 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKE---------KFGDIDTA----TATPTELSTQ--------- 146 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTT---------C------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH----HHHHHHCCCC---------
T ss_conf 8889999999995598751137899999999999999999---------99989999----8766512677---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55777754200012678998987787422149998884345655676410001359999899988777775222366899
Q 004622 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (741)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (741)
+. .. .. ......|....+. ...+..
T Consensus 147 -------------------~~--~~---~~---~~~~~~~~~~~~~-~~~~~~--------------------------- 171 (514)
T 2gw1_A 147 -------------------PA--KE---RK---DKQENLPSVTSMA-SFFGIF--------------------------- 171 (514)
T ss_dssp -------------------------------------CCCCHHHHH-HHHTTS---------------------------
T ss_pred -------------------HH--HH---HH---HHCCCCCHHHHHH-HHHHHC---------------------------
T ss_conf -------------------24--67---88---6344786158999-998625---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHC-----C--CCCCCHHHHHHHHH
Q ss_conf 866557898777654222245678864789852447872---4991048999998650-----0--79980069999999
Q 004622 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSAS---LNDSNTNSESYSKSSI-----S--DNKSSDSTESRSKL 348 (741)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~a~~-----~--~p~~~~~~~~la~~ 348 (741)
...+ .. ..-............|..++. .|++++|+..|++++. . .|.+..
T Consensus 172 -~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------- 231 (514)
T 2gw1_A 172 -KPEL--------TF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK-------- 231 (514)
T ss_dssp -CCCC--------CC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH--------
T ss_pred -CHHH--------HH---HHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC--------
T ss_conf -8788--------88---872599588899998999987623322999999999999886654223810011--------
Q ss_pred HHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 97133089978999975889998731048853999999999999819999999999999996999899999999999982
Q 004622 349 SFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428 (741)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 428 (741)
..|.....++.+|.++...|++++|+..+++++..+|. ..++..+|.++...
T Consensus 232 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 232 ---------------------------LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADR 283 (514)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS
T ss_pred ---------------------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHC
T ss_conf ---------------------------48278999999999999878999999999999863864-89999999999988
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 36999999999999819990999999999999839919999999999821999999999999999975999999999999
Q 004622 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (741)
Q Consensus 429 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (741)
|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++
T Consensus 284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 88999999999986138677899999999999807799999999999873850289999999999986899999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf 99717899999999999999819999999999999971804099------99999999999---1892999999999993
Q 004622 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQD---LANSEKALECLQQVLY 579 (741)
Q Consensus 509 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~ 579 (741)
++...|.+..++..+|.++...|++++|+..+++++...|.+.. ++..+|.++.. .|++++|+..+++++.
T Consensus 364 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99875467789999999998788999999999999976123321789999999999998663325888999999999987
Q ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 1855299999999999988995999999998463049843899
Q 004622 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPHLIWN 622 (741)
Q Consensus 580 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (741)
..|+++.++..+|.++...|++++|+..|++++.++|++ ...
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~ 485 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEK 485 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-HHH
T ss_conf 585558999999999998257999999999998766146-889
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=299.48 Aligned_cols=447 Identities=15% Similarity=0.098 Sum_probs=330.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 73999999999992189999999999998043-77245987999999602499999999999984999745999999999
Q 004622 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (741)
Q Consensus 35 ~~~~~~~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 113 (741)
.+..-...+..++..|+|++|+..|++++..+ .++..+.++|.+|.++|++++|+..+++++.++|+++.+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999999999998642999999999998638998489999999999868999999999999860986289999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCC
Q ss_conf 98699999999999999745999599999999999999973000001366767754101211123566853012210158
Q 004622 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193 (741)
Q Consensus 114 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 193 (741)
..+|++++|+..|+ ++.++|+........+............ ....+...|.......
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~------------------~~~~l~~~~~~~~~~~--- 161 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKV------------------LNENLSKDEGRGSQVL--- 161 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHH------------------HHHHCC-------CCC---
T ss_pred HHCCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHH------------------HHHHHHHCCCCCCCCC---
T ss_conf 98389999999999-9864878785889999987789889999------------------9999974745454345---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87534557777542000126789989877874221499988843456556764100013599998999887777752223
Q 004622 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273 (741)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (741)
+...... ...+.. + .....
T Consensus 162 -----------------------------------------~~~~~~~----~~~~~~----~------------~~~~~ 180 (537)
T 3fp2_A 162 -----------------------------------------PSNTSLA----SFFGIF----D------------SHLEV 180 (537)
T ss_dssp -----------------------------------------CCHHHHH----HHHHTS----C------------HHHHH
T ss_pred -----------------------------------------CHHHHHH----HHHHHC----C------------HHHHH
T ss_conf -----------------------------------------0675799----999744----7------------49999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--------HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 66899866557898777654222245678864789852--------4478724991048999998650079980069999
Q 004622 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKL--------SSDSASLNDSNTNSESYSKSSISDNKSSDSTESR 345 (741)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 345 (741)
...................+ |......+++++|+..|++++...|.+...+..+
T Consensus 181 ------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 242 (537)
T 3fp2_A 181 ------------------SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242 (537)
T ss_dssp ------------------HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred ------------------HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf ------------------98763256461789999999878876402068888799999999999998787740445999
Q ss_pred HHHHHCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99997133089978999975889998731048853999999999999819999999999999996999899999999999
Q 004622 346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425 (741)
Q Consensus 346 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 425 (741)
+ ..+..+|..+...|++++|+..|++++..+|. ..++..+|.++
T Consensus 243 ~-----------------------------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 286 (537)
T 3fp2_A 243 A-----------------------------------LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTL 286 (537)
T ss_dssp H-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHT
T ss_pred H-----------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHH
T ss_conf 9-----------------------------------99999999987545578999999999866987-46999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 98236999999999999819990999999999999839919999999999821999999999999999975999999999
Q 004622 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (741)
Q Consensus 426 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 505 (741)
...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98037999999999975459998799999999998668999999999999985999779999999999984779999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHC----------CCHHH
Q ss_conf 99999717899999999999999819999999999999971804099------999999999991----------89299
Q 004622 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDL----------ANSEK 569 (741)
Q Consensus 506 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~----------~~~~~ 569 (741)
+++++...|.+..++..+|.++...|++++|+..+++++...|.+.. .+..+|.++... |++++
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99998739998599999999998837889999999999870976244688899999889999997640100224757999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999993185529999999999998899599999999846304984
Q 004622 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGSRTMMPH 618 (741)
Q Consensus 570 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (741)
|+..+++++...|++..++..+|.++...|++++|+..|++++.+.|..
T Consensus 447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999997499978999999999998514999999999999868993
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=291.10 Aligned_cols=413 Identities=15% Similarity=0.110 Sum_probs=351.8
Q ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 72459879999996024999999999999849997459999999999869999999999999974599959999999999
Q 004622 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147 (741)
Q Consensus 68 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 147 (741)
+...+..+|.++++.|+|++|+..+++++..+| ++.+++.+|.++..+|++++|+..++++++++|++.. +
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~------- 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK-V------- 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHH-H-------
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-H-------
T ss_conf 579999987899986027899999999985592-2789986889999885499999999877606937899-9-------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999730000013667677541012111235668530122101588753455777754200012678998987787422
Q 004622 148 ELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDE 227 (741)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (741)
T Consensus 76 -------------------------------------------------------------------------------- 75 (514)
T 2gw1_A 76 -------------------------------------------------------------------------------- 75 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 14999888434565567641000135999989998877777522236689986655789877765422224567886478
Q 004622 228 AKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDV 307 (741)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (741)
T Consensus 76 -------------------------------------------------------------------------------- 75 (514)
T 2gw1_A 76 -------------------------------------------------------------------------------- 75 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHHHHHHHH---HHH-------------------
Q ss_conf 9852447872499104899999865007998006999999997133089978999---975-------------------
Q 004622 308 HDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA---KRN------------------- 365 (741)
Q Consensus 308 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~a~~~~---~~~------------------- 365 (741)
+..+|..+...|++++|+..|++++...|.+........................ ...
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 99888999987668889999999995598751137899999999999999999999899998766512677246788634
Q ss_pred --------HHHHHHHH-------HCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CC
Q ss_conf --------88999873-------10488539999999999998---1999999999999999-----6--9-------99
Q 004622 366 --------KKFCVTRI-------SKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PM 413 (741)
Q Consensus 366 --------~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~ 413 (741)
........ .-..|.+...++..|..++. .|++++|+..|++++. . . |.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 47861589999986258788888725995888999989999876233229999999999998866542238100114827
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 89999999999998236999999999999819990999999999999839919999999999821999999999999999
Q 004622 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (741)
Q Consensus 414 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (741)
.+.++..+|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8999999999999878999999999999863864-899999999999888899999999998613867789999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 97599999999999999717899999999999999819999999999999971804099999999999991892999999
Q 004622 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (741)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 573 (741)
...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98077999999999998738502899999999999868999999999999987546778999999999878899999999
Q ss_pred HHHHHHHCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999931855299------99999999998---89959999999984630498438999999999998598989999988
Q 004622 574 LQQVLYIDKRFSK------AYHLRGLLLHG---LGQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCT 644 (741)
Q Consensus 574 ~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~ 644 (741)
+++++...|.+.. ++..+|.++.. .|++++|+..+++++...|.+ ... +..+|.++...|++++|+..+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~-~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQA-KIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHH-HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHH-HHHHHHHHHHHCCHHHHHHHH
T ss_conf 999997612332178999999999999866332588899999999998758555-899-999999999825799999999
Q ss_pred HHHCCCCC
Q ss_conf 84015775
Q 004622 645 RLLKSTVS 652 (741)
Q Consensus 645 ~~~~~~~~ 652 (741)
+......|
T Consensus 473 ~~a~~~~~ 480 (514)
T 2gw1_A 473 EESADLAR 480 (514)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHCC
T ss_conf 99987661
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=288.41 Aligned_cols=450 Identities=14% Similarity=0.073 Sum_probs=340.7
Q ss_pred HHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999998043-----77245987999999602499999999999984999745999999999986999999999999
Q 004622 54 KAIRILDSLLAQS-----YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128 (741)
Q Consensus 54 ~Ai~~~~~al~~~-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 128 (741)
.+...++...... .....+..+|.++.+.|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp ---CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89960776638995140788999999999999864299999999999863899848999999999986899999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99745999599999999999999973000001366767754101211123566853012210158875345577775420
Q 004622 129 GYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVS 208 (741)
Q Consensus 129 al~l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (741)
+++++|++.. +...++.+....... ..+...+ ..+..+|...
T Consensus 85 al~~~p~~~~-~~~~la~~~~~~g~~-----------~~A~~~~----~~~~~~~~~~---------------------- 126 (537)
T 3fp2_A 85 ALEIKPDHSK-ALLRRASANESLGNF-----------TDAMFDL----SVLSLNGDFD---------------------- 126 (537)
T ss_dssp HHHHCTTCHH-HHHHHHHHHHHHTCH-----------HHHHHHH----HHHC----------------------------
T ss_pred HHHCCCCHHH-HHHHHHHHHHHCCCH-----------HHHHHHH----HHHHCCCCCC----------------------
T ss_conf 9860986289-999999999983899-----------9999999----9986487878----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00126789989877874221499988843456556764100013599998999887777752223668998665578987
Q 004622 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPI 288 (741)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (741)
..
T Consensus 127 -------------~~----------------------------------------------------------------- 128 (537)
T 3fp2_A 127 -------------GA----------------------------------------------------------------- 128 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HH-----------------------------------------------------------------
T ss_conf -------------58-----------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHCHHCHHHHHHHHHHH
Q ss_conf 7765422224567886478985244787249910489999986500799800---6999999997133089978999975
Q 004622 289 DKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSD---STESRSKLSFKWDMLKETSNEAKRN 365 (741)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~g~~~~a~~~~~~~ 365 (741)
....+...+...+|+..+.+++...|.... ........++...+...+..
T Consensus 129 ----------------------~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 181 (537)
T 3fp2_A 129 ----------------------SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS----- 181 (537)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH-----
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHH-----
T ss_conf ----------------------89999987789889999999997474545434506757999997447499999-----
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--------HHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHCCC
Q ss_conf 8899987310488539999999--------99999819999999999999996999899-------99999999998236
Q 004622 366 KKFCVTRISKSKSISVDFRLSR--------GIAQVNEGKYASAISIFDQILKEDPMYPE-------ALIGRGTARAFQRE 430 (741)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~--------a~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~ 430 (741)
.+.......+........+ +......|++++|+..|++++..+|+++. ++..+|.++...|+
T Consensus 182 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 182 ---SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp ---TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---87632564617899999998788764020688887999999999999987877404459999999999999875455
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999981999099999999999983991999999999982199999999999999997599999999999999
Q 004622 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (741)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (741)
+++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++
T Consensus 259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 78999999999866987-46999999999980379999999999754599987999999999986689999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-----
Q ss_conf 717899999999999999819999999999999971804099999999999991892999999999993185529-----
Q 004622 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS----- 585 (741)
Q Consensus 511 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----- 585 (741)
...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+.
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 85999779999999999984779999999999987399985999999999988378899999999998709762446888
Q ss_pred -HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf -9999999999988----------995999999998463049843899999999999859898999998884015775
Q 004622 586 -KAYHLRGLLLHGL----------GQHKKAIKDLSSGSRTMMPHLIWNLTRWRNLCFNAWPFIRRRLLCTRLLKSTVS 652 (741)
Q Consensus 586 -~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 652 (741)
..+..+|.++... |++++|+..|++++..+|++ ... +..+|.++...|++++|+.+++......|
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS-EQA-KIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC-HHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-HHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 99999889999997640100224757999999999999749997-899-99999999985149999999999998689
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=272.41 Aligned_cols=391 Identities=14% Similarity=0.072 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999998043-77245987999999602499999999999984999745999999999986999999999999997
Q 004622 53 SKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (741)
Q Consensus 53 ~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 131 (741)
..+...+.+++..+ .+...+..+|.++.+.|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 44465642356653789999999999999879999999999999984971689999999999987997999999999984
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45999599999999999999973000001366767754101211123566853012210158875345577775420001
Q 004622 132 HALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETC 211 (741)
Q Consensus 132 l~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (741)
++|++..
T Consensus 89 ~~p~~~~------------------------------------------------------------------------- 95 (450)
T 2y4t_A 89 LKMDFTA------------------------------------------------------------------------- 95 (450)
T ss_dssp HCTTCHH-------------------------------------------------------------------------
T ss_pred CCCCCHH-------------------------------------------------------------------------
T ss_conf 4987489-------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26789989877874221499988843456556764100013599998999887777752223668998665578987776
Q 004622 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKA 291 (741)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (741)
T Consensus 96 -------------------------------------------------------------------------------- 95 (450)
T 2y4t_A 96 -------------------------------------------------------------------------------- 95 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHCHHCHHHHHHHHHHHHHH
Q ss_conf 542222456788647898524478724991048999998650079980---06999999997133089978999975889
Q 004622 292 SVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSS---DSTESRSKLSFKWDMLKETSNEAKRNKKF 368 (741)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~a~~~~~~~~~~ 368 (741)
....+|..+...|++++|+..|++++...|.+. ..+..++..+.
T Consensus 96 ---------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------ 142 (450)
T 2y4t_A 96 ---------------ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE------------------ 142 (450)
T ss_dssp ---------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------
T ss_pred ---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH------------------
T ss_conf ---------------99999999998699999999999997249997016889999999999------------------
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99873104885399999999999981999999999999999699989999999999998236999999999999819990
Q 004622 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (741)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 448 (741)
...++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+
T Consensus 143 ------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 143 ------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp ------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf ------------99999999999986899999999999998688976999999999987799999999999999868898
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999983991999999999982199999999999------------999997599999999999999717899
Q 004622 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER------------GIVNFKFKDFNAAVEDLSACVKLDKEN 516 (741)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~ 516 (741)
+.++..+|.++...|++++|+..+++++...|++...+..+ |.++...|++++|+..+++++...|.+
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 79999999999975999999999999987599808999999999999999999999987179999999999998508733
Q ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9----999999999998199999999999999718040999999999999918929999999999931855299999999
Q 004622 517 K----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (741)
Q Consensus 517 ~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 592 (741)
+ ..+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|+++.++..++
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 68999999999999998788999999999998848454899999999998703799999999999885935299999999
Q ss_pred HH------------HHHCC-----CHHHHHHHHHH-HHHHCCCCH--------HHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99------------99889-----95999999998-463049843--------8999999999998598989999
Q 004622 593 LL------------LHGLG-----QHKKAIKDLSS-GSRTMMPHL--------IWNLTRWRNLCFNAWPFIRRRL 641 (741)
Q Consensus 593 ~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~~--------~~~~~~~la~~~~~~g~~~~A~ 641 (741)
.+ |..+| +.+++.+.|++ ++...|++. ....+..++.+|..+++.+.+.
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999986433505699981898668989999999999997598979993478999999999999999868999997
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=262.04 Aligned_cols=377 Identities=14% Similarity=0.046 Sum_probs=187.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999992189999999999998043-77245987999999602499999999999984999745999999999986999
Q 004622 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (741)
Q Consensus 41 ~~~~~~~~~g~~~~Ai~~~~~al~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 119 (741)
..+..++..|+|++|+..|++++..+ .+...+.++|.++...|++++|+..+++++..+|++..+++.+|.++..+|++
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999998799999999999999849716899999999999879979999999999844987489999999999986999
Q ss_pred HHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 999999999997459995---99999999999999973000001366767754101211123566853012210158875
Q 004622 120 EEALSVWEKGYEHALHQS---ADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD 196 (741)
Q Consensus 120 ~~A~~~~~~al~l~p~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 196 (741)
++|+..|++++.++|++. . ....+.......
T Consensus 111 ~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------------------------------------------- 144 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPSENEEKE-AQSQLIKSDEMQ--------------------------------------------- 144 (450)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHH-HHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHH---------------------------------------------
T ss_conf 9999999999724999701688-999999999999---------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34557777542000126789989877874221499988843456556764100013599998999887777752223668
Q 004622 197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ 276 (741)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (741)
T Consensus 145 -------------------------------------------------------------------------------- 144 (450)
T 2y4t_A 145 -------------------------------------------------------------------------------- 144 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHCHH
Q ss_conf 99866557898777654222245678864789852447872499104899999865007998006999999997133089
Q 004622 277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK 356 (741)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~ 356 (741)
....+|..++..|++++|+..|++++...|.+...+..++.++...|+++
T Consensus 145 ------------------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 145 ------------------------------RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp ------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGG
T ss_pred ------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf ------------------------------99999999998689999999999999868897699999999998779999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 97899997588999873104885399999999999981999999999999999699989999999999998236999999
Q 004622 357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436 (741)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 436 (741)
+|+. .+..+....|.+...+..+|.++...|++++|+..|++++...|++...+..++.+..
T Consensus 195 ~A~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~---------- 256 (450)
T 2y4t_A 195 KAIS--------DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK---------- 256 (450)
T ss_dssp GGHH--------HHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------
T ss_pred HHHH--------HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------
T ss_conf 9999--------9999998688987999999999997599999999999998759980899999999999----------
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999981999099999999999983991999999999982199999----99999999999759999999999999971
Q 004622 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----DILHERGIVNFKFKDFNAAVEDLSACVKL 512 (741)
Q Consensus 437 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (741)
......+|.++...|++++|+..+++++...|.++ ..+..+|.++...|++++|+..+++++..
T Consensus 257 ------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 257 ------------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp ------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ------------99999999999871799999999999985087336899999999999999878899999999999884
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH------------HHHCC-----CHHHHHHHHH
Q ss_conf 789999999999999981999999999999997180409999999999------------99918-----9299999999
Q 004622 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF------------YQDLA-----NSEKALECLQ 575 (741)
Q Consensus 513 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~------------~~~~~-----~~~~A~~~~~ 575 (741)
.|.+..++..+|.++...|++++|+..++++++..|+++.++..++.+ |...| +.+++.+.|+
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~ 404 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 84548999999999987037999999999998859352999999999999864335056999818986689899999999
Q ss_pred H-HHHHCCCC----------HHHHHHHHHHHHHCCCHHH
Q ss_conf 9-99318552----------9999999999998899599
Q 004622 576 Q-VLYIDKRF----------SKAYHLRGLLLHGLGQHKK 603 (741)
Q Consensus 576 ~-al~~~p~~----------~~~~~~la~~~~~~g~~~~ 603 (741)
+ ++...|+. ...+..++.+|..+++.++
T Consensus 405 ~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 405 KLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999975989799934789999999999999998689999
Done!