Query 004623
Match_columns 741
No_of_seqs 222 out of 961
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02925 4-hydroxy-3-methylbut 100.0 9E-213 2E-217 1753.9 63.7 733 1-741 1-733 (733)
2 PRK00694 4-hydroxy-3-methylbut 100.0 4E-195 8E-200 1587.2 56.1 602 76-738 3-606 (606)
3 PRK02048 4-hydroxy-3-methylbut 100.0 5E-193 1E-197 1580.1 56.0 608 79-735 2-611 (611)
4 PF04551 GcpE: GcpE protein; 100.0 6E-144 1E-148 1136.0 28.8 357 88-731 1-358 (359)
5 TIGR00612 ispG_gcpE 1-hydroxy- 100.0 4E-139 9E-144 1091.6 39.2 343 85-729 1-346 (346)
6 COG0821 gcpE 1-hydroxy-2-methy 100.0 1E-137 3E-142 1076.6 39.2 355 83-739 1-358 (361)
7 PRK00366 ispG 4-hydroxy-3-meth 100.0 5E-133 1E-137 1052.0 39.6 349 81-731 5-356 (360)
8 PRK00694 4-hydroxy-3-methylbut 99.8 3.2E-20 6.9E-25 206.7 10.2 96 538-639 202-297 (606)
9 PRK02048 4-hydroxy-3-methylbut 99.8 1.5E-19 3.1E-24 202.7 10.6 146 538-697 198-352 (611)
10 PLN02925 4-hydroxy-3-methylbut 99.7 4.2E-17 9.1E-22 185.2 10.1 92 538-635 267-358 (733)
11 TIGR00612 ispG_gcpE 1-hydroxy- 99.6 5.7E-16 1.2E-20 164.6 9.2 76 538-623 166-241 (346)
12 PRK00366 ispG 4-hydroxy-3-meth 99.6 4.3E-16 9.4E-21 166.6 8.3 118 538-671 175-294 (360)
13 PF04551 GcpE: GcpE protein; 99.6 3.2E-15 6.9E-20 160.1 7.2 75 538-622 175-249 (359)
14 COG0821 gcpE 1-hydroxy-2-methy 99.5 1.9E-14 4E-19 152.9 7.9 75 538-622 168-242 (361)
15 PRK04165 acetyl-CoA decarbonyl 98.2 9.5E-05 2E-09 83.0 20.1 217 78-344 51-296 (450)
16 cd00739 DHPS DHPS subgroup of 97.7 0.0028 6.1E-08 66.3 18.8 193 114-344 20-243 (257)
17 TIGR00284 dihydropteroate synt 97.5 0.012 2.6E-07 67.3 22.4 227 90-366 137-376 (499)
18 PRK13504 sulfite reductase sub 97.5 0.00062 1.3E-08 78.1 11.4 121 607-729 385-536 (569)
19 TIGR01496 DHPS dihydropteroate 97.4 0.009 2E-07 62.6 17.9 202 115-362 20-252 (257)
20 PRK14989 nitrite reductase sub 97.4 0.0041 8.8E-08 74.8 17.0 119 612-733 603-745 (847)
21 cd00423 Pterin_binding Pterin 97.4 0.021 4.6E-07 59.4 19.7 207 115-357 21-253 (258)
22 PLN00178 sulfite reductase 97.4 0.0013 2.9E-08 76.6 11.9 121 607-729 433-585 (623)
23 TIGR02042 sir ferredoxin-sulfi 97.2 0.0023 5E-08 73.9 12.2 121 607-729 395-546 (577)
24 TIGR02435 CobG precorrin-3B sy 97.2 0.0024 5.2E-08 70.1 10.8 105 627-733 70-201 (390)
25 TIGR02374 nitri_red_nirB nitri 97.0 0.0036 7.8E-08 74.4 11.5 117 614-733 595-733 (785)
26 PRK09566 nirA ferredoxin-nitri 97.0 0.017 3.6E-07 65.8 15.9 92 641-733 140-261 (513)
27 PRK04452 acetyl-CoA decarbonyl 97.0 0.08 1.7E-06 57.7 19.9 184 87-314 13-249 (319)
28 PF01077 NIR_SIR: Nitrite and 96.9 0.0028 6.2E-08 60.5 7.8 88 641-729 7-119 (157)
29 TIGR00381 cdhD CO dehydrogenas 96.9 0.039 8.5E-07 61.4 17.4 192 87-325 74-325 (389)
30 PRK07535 methyltetrahydrofolat 96.9 0.045 9.8E-07 57.7 17.0 168 115-320 22-203 (261)
31 TIGR02041 CysI sulfite reducta 96.9 0.0031 6.7E-08 72.2 8.9 120 608-729 370-519 (541)
32 COG0155 CysI Sulfite reductase 96.7 0.0083 1.8E-07 68.7 10.6 121 608-730 336-482 (510)
33 PRK09566 nirA ferredoxin-nitri 96.7 0.0064 1.4E-07 69.1 9.6 91 640-731 392-505 (513)
34 PRK09567 nirA ferredoxin-nitri 96.5 0.013 2.9E-07 68.0 10.7 102 627-729 428-557 (593)
35 PLN02431 ferredoxin--nitrite r 96.4 0.023 5E-07 66.1 11.4 89 640-729 466-578 (587)
36 PRK12595 bifunctional 3-deoxy- 96.1 0.25 5.4E-06 54.6 16.9 178 86-317 102-298 (360)
37 PRK11613 folP dihydropteroate 96.1 0.46 1E-05 51.1 18.4 207 115-363 35-268 (282)
38 PRK13398 3-deoxy-7-phosphohept 96.0 0.68 1.5E-05 49.3 19.4 150 86-281 11-169 (266)
39 PRK13504 sulfite reductase sub 95.9 0.051 1.1E-06 62.8 11.0 90 641-732 149-295 (569)
40 TIGR02082 metH 5-methyltetrahy 95.7 0.48 1E-05 59.5 19.1 211 115-361 365-607 (1178)
41 PRK08673 3-deoxy-7-phosphohept 95.7 0.74 1.6E-05 50.7 18.4 146 87-281 78-235 (335)
42 TIGR00542 hxl6Piso_put hexulos 95.6 2.1 4.6E-05 44.3 20.5 226 101-361 2-268 (279)
43 TIGR01361 DAHP_synth_Bsub phos 95.5 0.65 1.4E-05 49.1 16.6 163 88-299 11-192 (260)
44 PF00809 Pterin_bind: Pterin b 95.5 0.23 5E-06 50.4 12.8 169 115-313 16-203 (210)
45 PRK09490 metH B12-dependent me 95.3 0.41 8.9E-06 60.3 16.5 211 115-361 381-623 (1229)
46 TIGR02435 CobG precorrin-3B sy 95.2 0.076 1.7E-06 58.5 8.9 73 627-700 310-389 (390)
47 cd07939 DRE_TIM_NifV Streptomy 95.0 1.1 2.5E-05 46.5 16.5 142 114-284 16-161 (259)
48 PRK13753 dihydropteroate synth 95.0 2.5 5.5E-05 45.6 19.1 209 115-362 22-258 (279)
49 PLN02431 ferredoxin--nitrite r 94.7 0.21 4.5E-06 58.4 11.0 105 627-732 191-331 (587)
50 cd07948 DRE_TIM_HCS Saccharomy 94.6 1.9 4.2E-05 45.5 17.0 149 115-299 19-182 (262)
51 PRK02412 aroD 3-dehydroquinate 94.4 7.6 0.00017 40.8 21.2 195 90-325 3-212 (253)
52 TIGR02912 sulfite_red_C sulfit 94.4 0.32 6.9E-06 52.2 11.0 57 641-698 102-162 (314)
53 TIGR02041 CysI sulfite reducta 94.4 0.16 3.5E-06 58.5 9.2 87 645-733 141-280 (541)
54 PRK07028 bifunctional hexulose 93.9 1.4 2.9E-05 49.3 14.8 153 111-315 9-173 (430)
55 cd03174 DRE_TIM_metallolyase D 93.8 2.2 4.9E-05 43.3 15.1 162 112-299 13-187 (265)
56 cd07940 DRE_TIM_IPMS 2-isoprop 93.7 4.6 0.0001 42.3 17.6 156 115-299 17-184 (268)
57 cd00958 DhnA Class I fructose- 93.6 2.6 5.7E-05 42.8 15.3 143 114-297 72-234 (235)
58 PRK00979 tetrahydromethanopter 93.5 11 0.00024 41.5 20.4 186 86-316 6-229 (308)
59 TIGR01302 IMP_dehydrog inosine 93.4 0.61 1.3E-05 52.6 11.2 102 118-234 223-330 (450)
60 PRK04180 pyridoxal biosynthesi 93.3 1.7 3.7E-05 47.3 13.8 159 121-310 86-262 (293)
61 PF00682 HMGL-like: HMGL-like 93.3 1 2.2E-05 45.6 11.6 157 116-299 12-178 (237)
62 cd00740 MeTr MeTr subgroup of 93.0 4.9 0.00011 42.5 16.4 164 115-314 23-205 (252)
63 cd07943 DRE_TIM_HOA 4-hydroxy- 92.9 7.4 0.00016 40.7 17.6 148 112-299 16-182 (263)
64 TIGR02631 xylA_Arthro xylose i 92.8 1.6 3.5E-05 48.6 13.3 152 114-281 28-214 (382)
65 TIGR02066 dsrB sulfite reducta 92.8 0.63 1.4E-05 51.1 10.0 70 627-697 83-168 (341)
66 PRK13397 3-deoxy-7-phosphohept 92.3 16 0.00035 39.1 19.2 168 89-316 4-194 (250)
67 PRK13210 putative L-xylulose 5 92.3 3.5 7.6E-05 42.3 14.0 147 105-281 6-181 (284)
68 PTZ00314 inosine-5'-monophosph 92.2 1.2 2.5E-05 51.3 11.4 100 119-234 241-347 (495)
69 PRK13396 3-deoxy-7-phosphohept 92.1 7.5 0.00016 43.4 17.1 177 87-317 81-282 (352)
70 cd07941 DRE_TIM_LeuA3 Desulfob 92.1 7.7 0.00017 41.0 16.6 160 114-299 16-192 (273)
71 PF01261 AP_endonuc_2: Xylose 92.1 1.6 3.4E-05 41.7 10.6 152 125-299 2-185 (213)
72 TIGR02090 LEU1_arch isopropylm 91.8 6.8 0.00015 43.2 16.4 157 114-299 18-182 (363)
73 PRK15129 L-Ala-D/L-Glu epimera 91.7 2.6 5.6E-05 45.4 12.7 138 98-240 111-277 (321)
74 PRK11858 aksA trans-homoaconit 91.5 7 0.00015 43.4 16.2 159 114-299 22-186 (378)
75 PRK09567 nirA ferredoxin-nitri 91.4 0.61 1.3E-05 54.6 8.3 91 641-732 190-310 (593)
76 PRK09856 fructoselysine 3-epim 91.2 2.6 5.6E-05 43.2 11.7 141 120-285 15-184 (275)
77 TIGR01502 B_methylAsp_ase meth 90.8 3.1 6.7E-05 47.0 12.8 106 115-243 245-362 (408)
78 cd04729 NanE N-acetylmannosami 90.7 13 0.00028 37.7 16.0 109 100-238 9-130 (219)
79 cd03315 MLE_like Muconate lact 90.7 2.3 4.9E-05 44.1 10.8 110 98-238 126-238 (265)
80 COG1410 MetH Methionine syntha 90.6 7.7 0.00017 47.1 16.1 211 115-359 51-284 (842)
81 TIGR02660 nifV_homocitr homoci 90.6 15 0.00034 40.4 17.7 156 115-299 20-183 (365)
82 cd03316 MR_like Mandelate race 90.4 2 4.4E-05 46.1 10.5 110 98-238 186-298 (357)
83 PLN02746 hydroxymethylglutaryl 90.3 8.5 0.00018 42.8 15.3 159 115-299 65-238 (347)
84 PRK12457 2-dehydro-3-deoxyphos 90.0 2.6 5.7E-05 45.7 10.8 138 94-280 7-164 (281)
85 PRK09997 hydroxypyruvate isome 89.9 25 0.00055 36.1 17.6 204 116-359 16-252 (258)
86 cd07944 DRE_TIM_HOA_like 4-hyd 89.9 10 0.00023 40.1 15.1 146 115-299 17-179 (266)
87 cd04727 pdxS PdxS is a subunit 89.9 11 0.00024 41.0 15.4 166 121-320 77-261 (283)
88 cd00452 KDPG_aldolase KDPG and 89.8 4 8.6E-05 40.6 11.3 89 115-238 13-104 (190)
89 PRK13209 L-xylulose 5-phosphat 89.7 4.1 8.9E-05 42.0 11.7 139 121-285 24-190 (283)
90 TIGR03234 OH-pyruv-isom hydrox 89.5 7.5 0.00016 39.6 13.3 145 115-287 14-182 (254)
91 PRK09989 hypothetical protein; 89.2 6.8 0.00015 40.3 12.8 135 122-281 19-177 (258)
92 cd00502 DHQase_I Type I 3-dehy 89.1 1.9 4.2E-05 43.9 8.7 66 100-166 112-179 (225)
93 cd07938 DRE_TIM_HMGL 3-hydroxy 88.3 9.1 0.0002 40.7 13.4 158 114-299 16-190 (274)
94 PF04131 NanE: Putative N-acet 87.7 0.75 1.6E-05 47.3 4.7 66 118-186 51-117 (192)
95 cd00381 IMPDH IMPDH: The catal 87.6 8 0.00017 42.2 12.7 102 118-234 93-200 (325)
96 cd00019 AP2Ec AP endonuclease 87.5 8.3 0.00018 39.9 12.2 142 120-285 12-179 (279)
97 PRK02412 aroD 3-dehydroquinate 87.4 2.8 6E-05 44.0 8.8 64 102-166 136-202 (253)
98 PRK09389 (R)-citramalate synth 87.2 26 0.00057 40.5 17.1 157 114-299 20-184 (488)
99 COG2221 DsrA Dissimilatory sul 87.2 0.79 1.7E-05 50.2 4.8 56 641-697 103-164 (317)
100 TIGR01093 aroD 3-dehydroquinat 87.1 3 6.5E-05 42.8 8.7 54 112-166 129-184 (228)
101 cd00945 Aldolase_Class_I Class 86.9 17 0.00038 34.7 13.3 130 116-281 11-150 (201)
102 PRK06843 inosine 5-monophospha 86.9 5.5 0.00012 45.2 11.3 69 118-191 152-227 (404)
103 TIGR00343 pyridoxal 5'-phospha 86.9 17 0.00038 39.7 14.5 159 121-311 79-257 (287)
104 PRK13523 NADPH dehydrogenase N 86.9 23 0.00049 39.0 15.7 202 90-307 6-243 (337)
105 TIGR02064 dsrA sulfite reducta 86.6 1 2.2E-05 50.7 5.4 56 641-697 156-222 (402)
106 PRK05692 hydroxymethylglutaryl 86.5 25 0.00055 37.8 15.5 158 115-299 23-196 (287)
107 cd03319 L-Ala-DL-Glu_epimerase 86.1 5.1 0.00011 42.6 10.1 93 117-237 190-285 (316)
108 PRK12344 putative alpha-isopro 86.0 28 0.00061 40.6 16.6 160 114-299 23-199 (524)
109 PRK07807 inosine 5-monophospha 85.9 1.3 2.9E-05 50.7 6.0 66 119-187 277-358 (479)
110 cd07947 DRE_TIM_Re_CS Clostrid 85.9 53 0.0011 35.4 17.5 145 116-284 19-172 (279)
111 PLN02274 inosine-5'-monophosph 85.7 4.5 9.7E-05 46.9 10.1 70 119-194 248-325 (505)
112 cd04733 OYE_like_2_FMN Old yel 85.0 26 0.00057 38.0 15.0 183 90-284 4-224 (338)
113 cd02803 OYE_like_FMN_family Ol 84.9 29 0.00063 37.0 15.0 210 90-311 3-247 (327)
114 cd07945 DRE_TIM_CMS Leptospira 84.5 40 0.00087 36.2 15.8 159 115-298 16-187 (280)
115 TIGR00035 asp_race aspartate r 84.0 18 0.00038 37.1 12.5 41 118-165 62-102 (229)
116 PF01487 DHquinase_I: Type I 3 82.8 3.8 8.2E-05 41.6 7.1 65 101-166 113-179 (224)
117 PRK01130 N-acetylmannosamine-6 82.8 58 0.0013 33.0 16.8 178 100-344 5-201 (221)
118 cd04747 OYE_like_5_FMN Old yel 82.6 37 0.00081 37.9 15.1 212 90-311 4-254 (361)
119 PRK01261 aroD 3-dehydroquinate 82.2 5.5 0.00012 41.8 8.1 75 89-168 7-83 (229)
120 PF00478 IMPDH: IMP dehydrogen 82.1 9.2 0.0002 42.7 10.2 93 119-234 108-214 (352)
121 PF13913 zf-C2HC_2: zinc-finge 81.5 1.2 2.6E-05 31.6 2.1 18 641-659 1-18 (25)
122 cd04729 NanE N-acetylmannosami 81.0 4.3 9.4E-05 41.0 6.7 71 120-192 81-154 (219)
123 cd04734 OYE_like_3_FMN Old yel 81.0 90 0.0019 34.4 17.2 206 90-307 4-245 (343)
124 cd00308 enolase_like Enolase-s 81.0 14 0.0003 37.5 10.4 110 99-239 92-204 (229)
125 PF05853 DUF849: Prokaryotic p 80.7 4.4 9.6E-05 43.2 6.9 191 116-345 24-234 (272)
126 PF03599 CdhD: CO dehydrogenas 80.4 7.3 0.00016 44.0 8.7 152 116-316 44-218 (386)
127 cd04722 TIM_phosphate_binding 80.2 12 0.00025 35.1 8.9 77 108-192 5-95 (200)
128 PRK09432 metF 5,10-methylenete 80.1 71 0.0015 34.7 15.8 145 128-280 79-275 (296)
129 cd00945 Aldolase_Class_I Class 79.9 48 0.001 31.7 13.1 89 101-192 48-153 (201)
130 PLN00178 sulfite reductase 79.6 12 0.00027 44.5 10.7 91 641-733 183-348 (623)
131 PRK07379 coproporphyrinogen II 79.5 25 0.00053 39.3 12.5 119 117-281 50-172 (400)
132 PRK08446 coproporphyrinogen II 79.5 35 0.00075 37.4 13.4 135 115-297 31-175 (350)
133 cd03321 mandelate_racemase Man 79.4 10 0.00022 41.3 9.4 106 98-234 183-291 (355)
134 cd06556 ICL_KPHMT Members of t 79.2 47 0.001 35.2 13.8 151 125-325 26-208 (240)
135 PLN02274 inosine-5'-monophosph 79.2 4.1 9E-05 47.1 6.6 62 120-186 299-378 (505)
136 TIGR01928 menC_lowGC/arch o-su 79.1 30 0.00064 37.5 12.6 119 115-238 131-281 (324)
137 cd02932 OYE_YqiM_FMN Old yello 79.0 78 0.0017 34.4 15.8 209 90-307 4-257 (336)
138 PRK05799 coproporphyrinogen II 79.0 38 0.00083 37.0 13.6 135 116-297 35-176 (374)
139 PRK13111 trpA tryptophan synth 78.9 39 0.00085 36.0 13.2 98 116-238 24-149 (258)
140 PRK14017 galactonate dehydrata 78.9 9.6 0.00021 42.0 9.1 67 146-239 218-287 (382)
141 TIGR00492 alr alanine racemase 78.8 37 0.00079 37.1 13.3 92 124-257 46-139 (367)
142 TIGR01303 IMP_DH_rel_1 IMP deh 78.7 3.6 7.8E-05 47.3 5.8 66 119-187 275-356 (475)
143 KOG2367 Alpha-isopropylmalate 78.5 32 0.00068 40.3 13.0 135 113-298 74-212 (560)
144 PRK00311 panB 3-methyl-2-oxobu 78.2 82 0.0018 34.0 15.4 154 125-324 29-212 (264)
145 TIGR01093 aroD 3-dehydroquinat 78.1 88 0.0019 32.3 17.2 167 115-325 9-194 (228)
146 PRK09249 coproporphyrinogen II 78.1 33 0.00072 38.8 13.1 151 115-314 81-238 (453)
147 TIGR03128 RuMP_HxlA 3-hexulose 77.5 17 0.00037 36.1 9.5 96 113-237 7-108 (206)
148 PRK05567 inosine 5'-monophosph 77.5 13 0.00029 42.6 9.9 67 120-190 229-301 (486)
149 cd04727 pdxS PdxS is a subunit 77.2 8.1 0.00018 42.1 7.6 115 119-245 120-275 (283)
150 TIGR03128 RuMP_HxlA 3-hexulose 77.2 81 0.0018 31.4 14.3 65 123-193 68-138 (206)
151 PRK06245 cofG FO synthase subu 77.1 64 0.0014 34.9 14.4 145 114-278 40-205 (336)
152 TIGR01182 eda Entner-Doudoroff 76.9 28 0.00062 36.1 11.2 112 115-281 17-129 (204)
153 PRK05096 guanosine 5'-monophos 76.7 5.3 0.00012 44.5 6.2 66 119-187 160-241 (346)
154 cd02931 ER_like_FMN Enoate red 76.6 70 0.0015 35.7 14.9 186 90-284 4-226 (382)
155 TIGR01303 IMP_DH_rel_1 IMP deh 76.5 11 0.00025 43.3 9.1 99 121-234 227-331 (475)
156 PTZ00314 inosine-5'-monophosph 75.8 7.3 0.00016 45.0 7.3 66 120-187 292-372 (495)
157 PF00478 IMPDH: IMP dehydrogen 75.7 5.1 0.00011 44.7 5.8 63 119-187 158-239 (352)
158 cd02930 DCR_FMN 2,4-dienoyl-Co 75.5 83 0.0018 34.5 14.9 180 90-284 4-212 (353)
159 PRK06843 inosine 5-monophospha 75.5 7 0.00015 44.3 6.9 67 119-187 203-284 (404)
160 PRK00915 2-isopropylmalate syn 75.4 1.1E+02 0.0023 35.8 16.4 115 114-242 22-144 (513)
161 TIGR01163 rpe ribulose-phospha 74.9 36 0.00078 33.5 11.0 95 115-239 8-112 (210)
162 PRK13303 L-aspartate dehydroge 74.8 28 0.0006 36.8 10.7 127 172-351 75-212 (265)
163 PRK08255 salicylyl-CoA 5-hydro 74.6 64 0.0014 39.2 15.0 210 90-307 402-654 (765)
164 PRK00208 thiG thiazole synthas 74.5 32 0.0007 37.1 11.0 138 70-229 65-229 (250)
165 PRK01130 N-acetylmannosamine-6 74.3 13 0.00028 37.7 7.9 71 120-192 77-150 (221)
166 cd03323 D-glucarate_dehydratas 74.0 20 0.00044 40.0 9.9 92 116-238 225-319 (395)
167 cd03325 D-galactonate_dehydrat 73.7 17 0.00037 39.7 9.1 96 116-238 158-285 (352)
168 PRK08208 coproporphyrinogen II 73.7 56 0.0012 36.9 13.4 137 116-297 72-218 (430)
169 TIGR01302 IMP_dehydrog inosine 73.4 8.7 0.00019 43.6 7.1 65 120-187 275-355 (450)
170 COG1902 NemA NADH:flavin oxido 73.2 89 0.0019 35.1 14.6 204 90-307 9-254 (363)
171 TIGR00262 trpA tryptophan synt 72.9 1.3E+02 0.0029 31.9 16.4 102 116-242 22-151 (256)
172 cd03322 rpsA The starvation se 72.2 26 0.00057 38.4 10.2 110 98-238 160-272 (361)
173 cd03317 NAAAR N-acylamino acid 72.2 15 0.00033 39.7 8.2 65 146-237 218-285 (354)
174 PRK02227 hypothetical protein; 72.2 23 0.00049 37.9 9.2 123 108-247 56-193 (238)
175 TIGR03586 PseI pseudaminic aci 72.1 1.2E+02 0.0027 33.6 15.2 138 114-299 13-191 (327)
176 PRK12677 xylose isomerase; Pro 71.6 32 0.00069 38.6 10.8 150 113-281 29-213 (384)
177 PRK05198 2-dehydro-3-deoxyphos 71.5 35 0.00076 37.0 10.6 136 95-279 2-157 (264)
178 cd03316 MR_like Mandelate race 71.3 1.6E+02 0.0034 31.9 17.5 67 116-185 139-215 (357)
179 cd04728 ThiG Thiazole synthase 71.3 32 0.0007 37.0 10.2 118 70-193 65-209 (248)
180 PRK05105 O-succinylbenzoate sy 71.3 30 0.00065 37.6 10.2 57 160-238 208-265 (322)
181 cd04731 HisF The cyclase subun 71.3 51 0.0011 33.8 11.5 171 119-338 28-217 (243)
182 cd04724 Tryptophan_synthase_al 71.3 72 0.0016 33.3 12.7 103 115-243 11-141 (242)
183 PRK07807 inosine 5-monophospha 71.2 22 0.00048 41.1 9.6 97 121-234 229-333 (479)
184 cd03329 MR_like_4 Mandelate ra 70.1 52 0.0011 36.1 11.9 94 116-237 201-298 (368)
185 cd03320 OSBS o-Succinylbenzoat 70.1 27 0.00058 36.5 9.3 58 160-239 175-235 (263)
186 PRK05458 guanosine 5'-monophos 70.0 11 0.00025 41.5 6.8 63 120-188 150-230 (326)
187 TIGR00973 leuA_bact 2-isopropy 70.0 1.3E+02 0.0029 35.0 15.5 147 114-284 19-168 (494)
188 PRK07534 methionine synthase I 69.9 26 0.00056 38.7 9.5 82 118-242 131-214 (336)
189 PRK05660 HemN family oxidoredu 69.8 43 0.00092 37.1 11.2 121 117-283 40-166 (378)
190 PRK09722 allulose-6-phosphate 69.8 1.6E+02 0.0034 31.3 16.4 152 102-299 60-221 (229)
191 cd01137 PsaA Metal binding pro 69.5 27 0.00059 37.2 9.3 140 98-252 34-195 (287)
192 PRK12653 fructose-6-phosphate 69.5 61 0.0013 34.0 11.6 81 98-188 50-131 (220)
193 PRK05718 keto-hydroxyglutarate 69.5 56 0.0012 34.0 11.3 112 114-279 23-134 (212)
194 TIGR02042 sir ferredoxin-sulfi 69.5 14 0.00031 43.5 7.8 64 668-733 218-306 (577)
195 PRK06552 keto-hydroxyglutarate 69.3 53 0.0012 34.1 11.1 114 115-279 22-135 (213)
196 cd04722 TIM_phosphate_binding 69.2 25 0.00054 32.9 8.0 88 101-195 57-150 (200)
197 cd03319 L-Ala-DL-Glu_epimerase 68.6 94 0.002 33.2 13.1 82 99-184 117-202 (316)
198 PRK02901 O-succinylbenzoate sy 68.6 44 0.00094 36.8 10.8 90 115-237 145-238 (327)
199 PF02591 DUF164: Putative zinc 68.4 2.6 5.6E-05 34.7 1.1 13 640-652 44-56 (56)
200 COG2877 KdsA 3-deoxy-D-manno-o 68.4 12 0.00027 40.2 6.4 179 89-322 3-206 (279)
201 PRK13813 orotidine 5'-phosphat 68.2 1.4E+02 0.003 30.1 14.1 127 113-280 11-146 (215)
202 PRK07107 inosine 5-monophospha 68.1 9.5 0.00021 44.3 6.0 69 119-187 293-380 (502)
203 PRK08745 ribulose-phosphate 3- 68.1 85 0.0018 32.9 12.3 114 101-246 62-183 (223)
204 PRK07107 inosine 5-monophospha 68.1 29 0.00062 40.5 9.8 69 119-190 242-316 (502)
205 TIGR01927 menC_gamma/gm+ o-suc 67.7 43 0.00092 36.1 10.4 57 160-238 205-264 (307)
206 cd07937 DRE_TIM_PC_TC_5S Pyruv 67.5 1.8E+02 0.0038 31.1 16.2 143 116-299 19-190 (275)
207 cd03321 mandelate_racemase Man 67.2 38 0.00082 37.0 10.0 83 98-184 124-211 (355)
208 PF04131 NanE: Putative N-acet 66.6 9.5 0.00021 39.5 5.0 67 119-188 100-173 (192)
209 PRK04180 pyridoxal biosynthesi 66.6 28 0.00061 38.2 8.8 115 119-245 129-284 (293)
210 PF04476 DUF556: Protein of un 66.5 68 0.0015 34.4 11.3 110 123-249 72-195 (235)
211 cd03314 MAL Methylaspartate am 66.5 55 0.0012 36.8 11.2 117 98-238 189-319 (369)
212 PRK05826 pyruvate kinase; Prov 66.3 30 0.00064 40.1 9.3 153 118-302 173-338 (465)
213 PRK13347 coproporphyrinogen II 66.2 79 0.0017 36.0 12.6 136 116-298 83-230 (453)
214 cd03318 MLE Muconate Lactonizi 66.0 40 0.00088 36.7 10.0 93 116-237 200-296 (365)
215 TIGR00510 lipA lipoate synthas 66.0 1.1E+02 0.0024 33.5 13.2 158 116-299 92-272 (302)
216 cd04732 HisA HisA. Phosphorib 65.9 77 0.0017 32.0 11.3 153 119-309 30-193 (234)
217 cd06830 PLPDE_III_ADC Type III 65.8 81 0.0018 35.3 12.4 111 122-274 99-223 (409)
218 PRK07114 keto-hydroxyglutarate 65.7 67 0.0015 33.8 11.0 117 114-280 23-139 (222)
219 PRK08091 ribulose-phosphate 3- 65.7 23 0.0005 37.4 7.7 116 101-246 68-191 (228)
220 PF07476 MAAL_C: Methylasparta 65.4 28 0.00061 37.3 8.2 100 116-237 87-195 (248)
221 PTZ00300 pyruvate kinase; Prov 65.3 36 0.00079 39.3 9.8 154 118-302 147-311 (454)
222 cd06557 KPHMT-like Ketopantoat 65.3 1.7E+02 0.0037 31.4 14.2 152 125-324 26-209 (254)
223 PF00793 DAHP_synth_1: DAHP sy 64.7 29 0.00063 37.3 8.4 131 90-264 2-153 (270)
224 PRK07094 biotin synthase; Prov 64.6 1.9E+02 0.0041 31.0 14.4 132 115-298 70-206 (323)
225 PRK06464 phosphoenolpyruvate s 64.6 87 0.0019 38.6 13.3 157 119-299 621-790 (795)
226 PRK06294 coproporphyrinogen II 64.5 37 0.0008 37.5 9.4 78 223-304 105-183 (370)
227 COG0800 Eda 2-keto-3-deoxy-6-p 64.4 56 0.0012 34.5 10.1 159 115-340 22-182 (211)
228 PLN02623 pyruvate kinase 64.4 71 0.0015 38.2 12.0 152 121-302 281-442 (581)
229 PTZ00081 enolase; Provisional 64.3 26 0.00057 40.2 8.4 79 142-245 308-390 (439)
230 TIGR03471 HpnJ hopanoid biosyn 63.9 2.2E+02 0.0048 32.3 15.6 72 223-297 289-363 (472)
231 PRK08207 coproporphyrinogen II 63.9 29 0.00063 40.2 8.7 72 223-297 271-346 (488)
232 TIGR01949 AroFGH_arch predicte 63.5 1.2E+02 0.0026 31.9 12.5 145 113-309 34-195 (258)
233 cd03313 enolase Enolase: Enola 63.5 24 0.00052 39.8 7.8 69 144-237 290-362 (408)
234 PRK07998 gatY putative fructos 63.3 62 0.0013 35.3 10.6 154 115-309 26-202 (283)
235 TIGR00538 hemN oxygen-independ 63.3 1.7E+02 0.0037 33.3 14.5 136 116-298 82-229 (455)
236 cd00377 ICL_PEPM Members of th 63.0 2E+02 0.0044 30.2 14.8 157 125-317 23-207 (243)
237 TIGR01305 GMP_reduct_1 guanosi 63.0 16 0.00034 40.9 6.2 68 119-188 159-241 (343)
238 PF05690 ThiG: Thiazole biosyn 62.9 14 0.00031 39.5 5.6 89 98-191 88-207 (247)
239 cd03324 rTSbeta_L-fuconate_deh 62.8 41 0.0009 38.0 9.5 52 161-234 294-348 (415)
240 cd03329 MR_like_4 Mandelate ra 62.7 36 0.00078 37.4 8.8 68 115-185 142-215 (368)
241 PLN03033 2-dehydro-3-deoxyphos 62.6 54 0.0012 36.1 9.9 113 118-279 33-163 (290)
242 PLN03228 methylthioalkylmalate 62.5 3.2E+02 0.0069 32.3 16.8 127 114-281 102-230 (503)
243 PRK01060 endonuclease IV; Prov 62.3 2E+02 0.0043 29.8 15.6 99 108-242 6-112 (281)
244 PRK05096 guanosine 5'-monophos 61.9 64 0.0014 36.4 10.5 102 118-234 107-216 (346)
245 cd06821 PLPDE_III_D-TA Type II 61.9 1.4E+02 0.0031 32.4 13.1 25 124-150 49-73 (361)
246 PRK14057 epimerase; Provisiona 61.7 96 0.0021 33.5 11.5 120 101-248 75-207 (254)
247 TIGR00190 thiC thiamine biosyn 61.6 1E+02 0.0023 35.5 12.2 142 110-282 69-222 (423)
248 KOG0560 Sulfite reductase (fer 61.4 21 0.00045 41.8 6.9 96 633-729 491-602 (638)
249 cd00381 IMPDH IMPDH: The catal 61.4 25 0.00054 38.5 7.3 67 119-187 144-225 (325)
250 COG1579 Zn-ribbon protein, pos 61.2 3.1 6.7E-05 44.2 0.4 20 634-654 214-233 (239)
251 PF07293 DUF1450: Protein of u 61.0 28 0.00062 31.3 6.3 65 657-734 14-78 (78)
252 PRK10605 N-ethylmaleimide redu 60.9 2.8E+02 0.006 31.0 16.7 205 90-307 6-265 (362)
253 cd00430 PLPDE_III_AR Type III 60.6 1.2E+02 0.0027 32.9 12.4 22 126-149 47-68 (367)
254 TIGR03849 arch_ComA phosphosul 60.5 17 0.00038 38.6 5.8 57 219-287 42-98 (237)
255 PRK14336 (dimethylallyl)adenos 60.4 1.7E+02 0.0038 33.0 13.8 131 113-296 151-300 (418)
256 PRK09490 metH B12-dependent me 60.3 77 0.0017 41.0 12.1 123 118-266 164-302 (1229)
257 PRK00077 eno enolase; Provisio 59.5 39 0.00084 38.4 8.6 74 144-244 290-367 (425)
258 cd03327 MR_like_2 Mandelate ra 59.5 47 0.001 36.2 8.9 54 160-235 221-277 (341)
259 PRK00043 thiE thiamine-phospha 59.5 17 0.00037 35.8 5.2 65 118-187 21-87 (212)
260 PRK08195 4-hyroxy-2-oxovalerat 59.4 2.8E+02 0.0062 30.7 15.7 145 115-299 22-185 (337)
261 smart00729 Elp3 Elongator prot 59.0 69 0.0015 30.2 9.0 50 220-287 70-124 (216)
262 TIGR00343 pyridoxal 5'-phospha 58.7 44 0.00096 36.7 8.5 115 119-245 122-278 (287)
263 PRK05567 inosine 5'-monophosph 58.5 23 0.00051 40.6 6.8 66 120-187 279-359 (486)
264 TIGR02534 mucon_cyclo muconate 58.4 69 0.0015 35.1 10.1 65 146-237 228-295 (368)
265 PRK06015 keto-hydroxyglutarate 58.2 1.2E+02 0.0027 31.5 11.2 114 114-281 12-125 (201)
266 TIGR02082 metH 5-methyltetrahy 58.2 1.2E+02 0.0025 39.3 13.2 125 117-267 147-287 (1178)
267 COG0854 PdxJ Pyridoxal phospha 58.1 56 0.0012 35.1 8.8 83 144-241 109-192 (243)
268 cd00288 Pyruvate_Kinase Pyruva 58.1 1.1E+02 0.0023 35.8 11.9 151 119-302 175-338 (480)
269 TIGR03217 4OH_2_O_val_ald 4-hy 57.9 3E+02 0.0065 30.5 15.1 143 115-299 21-184 (333)
270 cd06815 PLPDE_III_AR_like_1 Ty 57.9 2.4E+02 0.0051 31.0 14.0 119 104-272 27-147 (353)
271 cd00635 PLPDE_III_YBL036c_like 57.3 81 0.0018 32.1 9.7 22 128-151 44-65 (222)
272 cd03327 MR_like_2 Mandelate ra 56.9 66 0.0014 35.0 9.6 68 115-185 119-197 (341)
273 PRK12656 fructose-6-phosphate 56.4 1.1E+02 0.0023 32.4 10.6 108 98-236 51-164 (222)
274 TIGR02329 propionate_PrpR prop 55.9 2.5E+02 0.0053 33.2 14.4 114 114-252 36-163 (526)
275 PLN02489 homocysteine S-methyl 55.9 78 0.0017 34.9 10.0 48 120-170 169-217 (335)
276 TIGR01306 GMP_reduct_2 guanosi 55.8 19 0.00041 39.8 5.2 61 120-187 147-226 (321)
277 PRK05628 coproporphyrinogen II 55.3 65 0.0014 35.4 9.3 57 223-282 110-166 (375)
278 PLN02321 2-isopropylmalate syn 55.2 4.7E+02 0.01 31.9 17.5 140 114-298 104-251 (632)
279 TIGR01060 eno phosphopyruvate 55.0 52 0.0011 37.4 8.7 74 143-243 290-367 (425)
280 TIGR00559 pdxJ pyridoxine 5'-p 54.8 41 0.00088 36.1 7.3 81 144-242 108-189 (237)
281 COG5016 Pyruvate/oxaloacetate 54.6 1.5E+02 0.0032 34.6 11.9 124 98-227 137-279 (472)
282 PRK14016 cyanophycin synthetas 54.4 1.3E+02 0.0028 36.6 12.3 76 222-298 164-284 (727)
283 PRK08883 ribulose-phosphate 3- 54.2 2.8E+02 0.006 29.0 15.2 117 102-246 59-179 (220)
284 COG0294 FolP Dihydropteroate s 54.1 3.2E+02 0.0069 29.6 15.3 205 115-363 28-260 (274)
285 PRK15072 bifunctional D-altron 54.1 65 0.0014 36.1 9.2 66 145-237 246-314 (404)
286 cd00331 IGPS Indole-3-glycerol 54.0 1.2E+02 0.0026 30.6 10.3 95 116-238 29-128 (217)
287 PF04423 Rad50_zn_hook: Rad50 53.9 4.6 0.0001 33.0 0.2 24 644-668 22-48 (54)
288 cd03315 MLE_like Muconate lact 53.8 67 0.0015 33.4 8.7 67 115-184 84-154 (265)
289 PF00834 Ribul_P_3_epim: Ribul 53.7 17 0.00037 37.4 4.2 113 101-245 57-177 (201)
290 PRK08649 inosine 5-monophospha 53.7 48 0.001 37.3 8.0 63 119-187 142-214 (368)
291 PRK12331 oxaloacetate decarbox 53.6 40 0.00087 38.8 7.6 77 108-189 144-232 (448)
292 PRK14042 pyruvate carboxylase 53.2 41 0.00089 40.2 7.7 74 108-186 144-227 (596)
293 COG0635 HemN Coproporphyrinoge 53.0 46 0.00099 37.8 7.8 64 223-290 139-203 (416)
294 PRK10382 alkyl hydroperoxide r 52.9 54 0.0012 33.2 7.6 70 102-175 32-105 (187)
295 PF13407 Peripla_BP_4: Peripla 52.9 1.4E+02 0.003 29.6 10.4 126 148-300 17-148 (257)
296 PF00919 UPF0004: Uncharacteri 52.6 15 0.00032 33.7 3.3 48 640-687 37-85 (98)
297 PRK02083 imidazole glycerol ph 52.6 1.1E+02 0.0023 31.9 9.9 126 121-280 33-173 (253)
298 cd03328 MR_like_3 Mandelate ra 52.4 75 0.0016 34.9 9.2 69 144-237 221-292 (352)
299 PRK10550 tRNA-dihydrouridine s 52.1 90 0.0019 34.2 9.6 34 101-138 62-95 (312)
300 PF02126 PTE: Phosphotriestera 51.9 1E+02 0.0022 33.8 10.0 149 116-299 36-206 (308)
301 TIGR01304 IMP_DH_rel_2 IMP deh 51.5 51 0.0011 37.1 7.8 67 119-191 143-219 (369)
302 cd02809 alpha_hydroxyacid_oxid 51.5 2.1E+02 0.0046 30.7 12.1 79 102-188 116-200 (299)
303 PF01081 Aldolase: KDPG and KH 51.4 1.3E+02 0.0028 31.2 10.1 93 114-238 16-108 (196)
304 PF00150 Cellulase: Cellulase 51.3 21 0.00046 36.0 4.5 68 101-171 5-85 (281)
305 cd04726 KGPDC_HPS 3-Keto-L-gul 51.2 80 0.0017 31.1 8.4 95 113-238 8-108 (202)
306 TIGR01362 KDO8P_synth 3-deoxy- 51.1 76 0.0017 34.4 8.7 113 118-279 19-149 (258)
307 TIGR01306 GMP_reduct_2 guanosi 51.1 1.6E+02 0.0035 32.8 11.4 69 118-192 93-171 (321)
308 PRK08599 coproporphyrinogen II 51.1 81 0.0018 34.6 9.2 91 223-320 102-197 (377)
309 TIGR02494 PFLE_PFLC glycyl-rad 51.0 95 0.0021 32.7 9.4 91 220-356 143-236 (295)
310 cd04823 ALAD_PBGS_aspartate_ri 50.9 24 0.00052 39.2 5.0 49 115-166 135-188 (320)
311 PRK12928 lipoyl synthase; Prov 50.8 2.8E+02 0.006 30.2 12.9 160 114-299 86-269 (290)
312 TIGR01418 PEP_synth phosphoeno 50.6 1.4E+02 0.003 36.9 11.8 138 121-280 616-766 (782)
313 PRK09058 coproporphyrinogen II 50.5 1.7E+02 0.0038 33.3 11.9 69 223-294 165-233 (449)
314 TIGR01108 oadA oxaloacetate de 50.5 47 0.001 39.5 7.7 74 108-186 139-222 (582)
315 PRK09485 mmuM homocysteine met 50.5 92 0.002 33.7 9.3 47 121-170 143-190 (304)
316 cd03129 GAT1_Peptidase_E_like 50.4 1.7E+02 0.0038 29.5 10.8 169 118-317 15-188 (210)
317 cd00956 Transaldolase_FSA Tran 50.4 1.5E+02 0.0032 30.8 10.4 109 101-238 51-162 (211)
318 cd03326 MR_like_1 Mandelate ra 50.4 93 0.002 34.9 9.6 91 116-234 217-314 (385)
319 PRK07329 hypothetical protein; 50.3 95 0.0021 32.4 9.1 77 217-305 164-240 (246)
320 PRK13585 1-(5-phosphoribosyl)- 50.3 1.5E+02 0.0032 30.3 10.4 152 120-309 34-196 (241)
321 cd06810 PLPDE_III_ODC_DapDC_li 50.1 1.4E+02 0.0031 32.2 10.7 57 220-281 150-207 (368)
322 PRK14040 oxaloacetate decarbox 49.7 4.1E+02 0.0088 32.0 15.1 163 107-311 17-203 (593)
323 TIGR03551 F420_cofH 7,8-dideme 49.7 1.8E+02 0.004 31.7 11.6 50 113-166 68-123 (343)
324 PRK12330 oxaloacetate decarbox 49.6 50 0.0011 38.7 7.6 70 112-186 149-230 (499)
325 TIGR00539 hemN_rel putative ox 49.4 86 0.0019 34.4 9.0 57 223-282 102-158 (360)
326 cd07941 DRE_TIM_LeuA3 Desulfob 49.3 83 0.0018 33.4 8.6 70 102-176 133-210 (273)
327 cd02801 DUS_like_FMN Dihydrour 49.2 2.2E+02 0.0047 28.6 11.2 104 157-282 50-160 (231)
328 cd00003 PNPsynthase Pyridoxine 49.2 66 0.0014 34.4 7.8 81 144-242 108-189 (234)
329 PF07503 zf-HYPF: HypF finger; 49.2 6.8 0.00015 30.3 0.4 17 635-651 14-30 (35)
330 PLN02520 bifunctional 3-dehydr 49.1 4.6E+02 0.01 30.8 15.3 147 115-309 32-195 (529)
331 cd04725 OMP_decarboxylase_like 48.8 2.8E+02 0.006 28.5 12.0 139 113-283 6-152 (216)
332 COG2089 SpsE Sialic acid synth 48.7 4.6E+02 0.0099 29.9 15.0 144 91-279 2-179 (347)
333 PRK12581 oxaloacetate decarbox 48.7 56 0.0012 38.0 7.8 77 108-189 153-241 (468)
334 TIGR03239 GarL 2-dehydro-3-deo 48.7 3.5E+02 0.0076 28.8 13.1 59 216-299 188-246 (249)
335 TIGR01859 fruc_bis_ald_ fructo 48.5 3.9E+02 0.0084 29.0 14.5 158 113-309 22-203 (282)
336 PRK14041 oxaloacetate decarbox 48.3 55 0.0012 38.0 7.6 74 108-186 143-226 (467)
337 PRK05458 guanosine 5'-monophos 48.1 1.3E+02 0.0029 33.4 10.2 68 119-192 97-174 (326)
338 TIGR01305 GMP_reduct_1 guanosi 47.6 1.3E+02 0.0028 34.0 10.0 101 118-234 106-215 (343)
339 PRK09282 pyruvate carboxylase 47.5 5.2E+02 0.011 31.1 15.5 155 115-311 23-202 (592)
340 COG2108 Uncharacterized conser 47.4 2.3E+02 0.005 32.1 11.8 243 75-362 43-322 (353)
341 cd02803 OYE_like_FMN_family Ol 47.3 1.2E+02 0.0026 32.4 9.5 94 98-196 205-319 (327)
342 COG0031 CysK Cysteine synthase 47.1 4.5E+02 0.0097 29.3 14.3 170 516-736 86-263 (300)
343 cd03174 DRE_TIM_metallolyase D 47.1 79 0.0017 32.3 7.9 73 101-177 128-206 (265)
344 PLN02428 lipoic acid synthase 47.1 4.7E+02 0.01 29.6 17.2 157 115-299 130-312 (349)
345 PRK09875 putative hydrolase; P 47.0 4.2E+02 0.0091 29.0 17.0 192 111-345 27-241 (292)
346 PRK05481 lipoyl synthase; Prov 46.9 4.1E+02 0.0088 28.8 13.9 138 115-279 80-230 (289)
347 TIGR02109 PQQ_syn_pqqE coenzym 46.9 1.7E+02 0.0037 31.7 10.7 94 219-356 69-164 (358)
348 PLN02591 tryptophan synthase 46.9 2.1E+02 0.0046 30.6 11.1 98 115-238 13-138 (250)
349 cd07937 DRE_TIM_PC_TC_5S Pyruv 46.6 79 0.0017 33.7 8.0 74 108-186 139-222 (275)
350 COG0623 FabI Enoyl-[acyl-carri 46.4 1.6E+02 0.0036 32.0 10.1 152 125-292 26-196 (259)
351 cd03317 NAAAR N-acylamino acid 46.4 4.2E+02 0.0091 28.8 13.6 56 116-175 137-192 (354)
352 cd04824 eu_ALAD_PBGS_cysteine_ 46.2 25 0.00054 39.0 4.3 50 114-166 133-188 (320)
353 cd03325 D-galactonate_dehydrat 46.1 1.4E+02 0.0029 32.8 9.9 68 115-185 122-202 (352)
354 COG0036 Rpe Pentose-5-phosphat 46.0 60 0.0013 34.4 6.8 113 100-245 60-180 (220)
355 PRK00230 orotidine 5'-phosphat 45.8 3.3E+02 0.0072 28.3 12.2 138 113-280 10-155 (230)
356 PRK09250 fructose-bisphosphate 45.7 2E+02 0.0043 32.6 11.1 133 98-234 122-284 (348)
357 cd06812 PLPDE_III_DSD_D-TA_lik 45.7 4.4E+02 0.0095 28.8 14.9 40 119-167 42-81 (374)
358 TIGR00875 fsa_talC_mipB fructo 45.5 2.2E+02 0.0048 29.7 10.8 81 102-192 52-133 (213)
359 PRK09283 delta-aminolevulinic 45.3 26 0.00057 38.9 4.3 51 113-166 136-191 (323)
360 PRK07455 keto-hydroxyglutarate 45.2 1.4E+02 0.003 30.2 9.1 89 115-238 21-112 (187)
361 TIGR01125 MiaB-like tRNA modif 44.6 4.6E+02 0.0099 29.6 13.9 28 113-140 162-189 (430)
362 PF08209 Sgf11: Sgf11 (transcr 44.5 12 0.00026 28.8 1.1 12 640-651 2-13 (33)
363 cd03320 OSBS o-Succinylbenzoat 44.3 1.1E+02 0.0024 32.0 8.5 63 119-184 85-152 (263)
364 PRK13384 delta-aminolevulinic 44.2 28 0.00061 38.7 4.3 50 114-166 139-193 (322)
365 cd06826 PLPDE_III_AR2 Type III 44.2 2.9E+02 0.0063 30.5 12.1 89 125-255 46-137 (365)
366 PRK15440 L-rhamnonate dehydrat 43.8 1.4E+02 0.0029 33.8 9.6 65 145-234 248-315 (394)
367 PF08901 DUF1847: Protein of u 43.7 59 0.0013 33.0 6.1 54 219-287 42-95 (157)
368 PRK05265 pyridoxine 5'-phospha 43.7 62 0.0013 34.8 6.6 80 144-242 111-191 (239)
369 PLN02424 ketopantoate hydroxym 43.4 83 0.0018 35.3 7.7 73 84-174 91-164 (332)
370 PRK00278 trpC indole-3-glycero 43.2 1.5E+02 0.0033 31.5 9.4 86 121-234 73-163 (260)
371 TIGR00587 nfo apurinic endonuc 42.9 4.3E+02 0.0093 27.9 14.1 118 121-281 14-142 (274)
372 COG5012 Predicted cobalamin bi 42.8 40 0.00087 35.9 5.0 53 524-580 141-193 (227)
373 PRK13347 coproporphyrinogen II 42.5 84 0.0018 35.8 7.9 156 91-283 102-290 (453)
374 PLN00191 enolase 42.1 77 0.0017 36.7 7.5 94 115-237 295-394 (457)
375 PF11023 DUF2614: Protein of u 42.0 13 0.00028 35.8 1.2 22 630-651 57-78 (114)
376 TIGR02026 BchE magnesium-proto 41.9 6.1E+02 0.013 29.4 15.5 73 223-298 289-364 (497)
377 cd03145 GAT1_cyanophycinase Ty 41.9 2E+02 0.0044 29.5 9.8 111 115-243 12-128 (217)
378 PLN02540 methylenetetrahydrofo 41.8 6.9E+02 0.015 30.2 15.2 162 115-279 41-267 (565)
379 PRK14017 galactonate dehydrata 41.8 1.7E+02 0.0037 32.5 9.9 67 115-184 123-202 (382)
380 cd03016 PRX_1cys Peroxiredoxin 41.6 93 0.002 31.5 7.3 55 114-169 42-97 (203)
381 cd06808 PLPDE_III Type III Pyr 41.4 1E+02 0.0022 30.1 7.4 46 220-273 93-140 (211)
382 PRK09140 2-dehydro-3-deoxy-6-p 41.4 3.3E+02 0.0072 28.1 11.3 90 115-238 19-111 (206)
383 PRK09282 pyruvate carboxylase 41.4 76 0.0016 37.9 7.5 77 108-189 144-232 (592)
384 PRK02714 O-succinylbenzoate sy 41.3 2.2E+02 0.0048 30.9 10.5 56 159-239 215-273 (320)
385 PRK12655 fructose-6-phosphate 41.3 3.3E+02 0.0071 28.7 11.4 78 98-185 50-128 (220)
386 PRK15424 propionate catabolism 41.1 5.5E+02 0.012 30.6 14.3 113 115-252 47-173 (538)
387 TIGR00875 fsa_talC_mipB fructo 41.0 45 0.00098 34.7 5.1 74 119-192 110-189 (213)
388 COG1326 Uncharacterized archae 40.7 19 0.0004 37.6 2.2 22 639-661 3-24 (201)
389 PRK15000 peroxidase; Provision 40.7 64 0.0014 32.8 6.0 70 101-170 34-108 (200)
390 TIGR02534 mucon_cyclo muconate 40.6 5.4E+02 0.012 28.4 13.9 67 116-185 141-213 (368)
391 cd06824 PLPDE_III_Yggs_like Py 40.6 2.5E+02 0.0054 28.8 10.3 154 119-314 36-201 (224)
392 cd01335 Radical_SAM Radical SA 40.6 1.8E+02 0.004 26.8 8.6 71 219-313 60-145 (204)
393 TIGR01108 oadA oxaloacetate de 40.5 7.1E+02 0.015 30.0 15.2 153 116-311 19-197 (582)
394 PRK07328 histidinol-phosphatas 40.4 82 0.0018 33.1 6.9 77 217-305 176-252 (269)
395 PRK01362 putative translaldola 40.4 58 0.0013 34.0 5.7 92 119-214 110-210 (214)
396 TIGR01458 HAD-SF-IIA-hyp3 HAD- 40.4 70 0.0015 33.4 6.4 60 220-279 26-91 (257)
397 PRK14024 phosphoribosyl isomer 40.4 3.4E+02 0.0074 28.3 11.4 145 121-309 35-193 (241)
398 COG0646 MetH Methionine syntha 40.3 2.8E+02 0.0061 31.1 11.0 149 117-294 142-306 (311)
399 cd07942 DRE_TIM_LeuA Mycobacte 40.2 5.2E+02 0.011 28.1 13.9 112 114-233 19-135 (284)
400 PRK14334 (dimethylallyl)adenos 40.2 3.7E+02 0.0081 30.6 12.4 137 114-298 166-315 (440)
401 smart00518 AP2Ec AP endonuclea 40.1 4.4E+02 0.0095 27.2 14.8 87 122-242 14-107 (273)
402 PRK01362 putative translaldola 40.1 2.6E+02 0.0057 29.3 10.4 108 102-236 52-160 (214)
403 PRK14338 (dimethylallyl)adenos 40.0 5.1E+02 0.011 29.8 13.5 29 113-141 182-210 (459)
404 TIGR00222 panB 3-methyl-2-oxob 39.8 75 0.0016 34.4 6.6 94 116-231 158-254 (263)
405 KOG2368 Hydroxymethylglutaryl- 39.5 94 0.002 33.7 7.1 105 118-236 40-152 (316)
406 COG2876 AroA 3-deoxy-D-arabino 39.4 1.7E+02 0.0036 32.4 9.0 141 89-279 31-185 (286)
407 PRK13669 hypothetical protein; 39.4 1.1E+02 0.0023 27.9 6.4 68 654-734 11-78 (78)
408 PF01261 AP_endonuc_2: Xylose 39.3 79 0.0017 30.2 6.1 64 217-281 26-92 (213)
409 PF13192 Thioredoxin_3: Thiore 39.2 22 0.00048 30.4 2.1 65 644-726 9-76 (76)
410 cd03322 rpsA The starvation se 39.2 1.4E+02 0.003 32.9 8.7 63 115-185 125-189 (361)
411 PF02784 Orn_Arg_deC_N: Pyrido 39.2 2.5E+02 0.0053 29.0 10.1 50 220-275 143-195 (251)
412 cd00384 ALAD_PBGS Porphobilino 39.0 37 0.0008 37.7 4.2 47 117-166 136-183 (314)
413 TIGR03278 methan_mark_10 putat 39.0 74 0.0016 36.3 6.7 51 219-287 90-142 (404)
414 PRK13352 thiamine biosynthesis 38.9 4.3E+02 0.0092 30.9 12.5 145 110-282 69-225 (431)
415 TIGR03822 AblA_like_2 lysine-2 38.7 1.6E+02 0.0035 32.2 9.0 97 219-317 154-272 (321)
416 PRK14456 ribosomal RNA large s 38.5 2.1E+02 0.0046 32.2 10.1 109 120-242 220-353 (368)
417 cd07940 DRE_TIM_IPMS 2-isoprop 38.3 1.4E+02 0.003 31.5 8.2 78 103-183 129-216 (268)
418 PRK07709 fructose-bisphosphate 38.2 3.2E+02 0.0069 30.0 11.0 88 537-638 42-132 (285)
419 TIGR03470 HpnH hopanoid biosyn 38.1 1.4E+02 0.0031 32.3 8.5 78 219-298 88-189 (318)
420 CHL00194 ycf39 Ycf39; Provisio 38.1 5.1E+02 0.011 27.4 12.4 126 124-279 17-142 (317)
421 PRK05904 coproporphyrinogen II 37.9 1.8E+02 0.0039 32.3 9.3 72 223-297 105-180 (353)
422 COG2069 CdhD CO dehydrogenase/ 37.8 1.9E+02 0.0042 32.5 9.3 79 127-234 160-254 (403)
423 PRK10128 2-keto-3-deoxy-L-rham 37.7 4.5E+02 0.0097 28.5 12.0 61 216-301 195-255 (267)
424 PRK08185 hypothetical protein; 37.6 5.9E+02 0.013 27.9 14.4 164 113-309 19-201 (283)
425 PRK14862 rimO ribosomal protei 37.5 6.8E+02 0.015 28.6 14.5 30 113-142 166-195 (440)
426 cd01568 QPRTase_NadC Quinolina 37.2 1E+02 0.0023 32.9 7.2 64 120-187 190-254 (269)
427 PRK12857 fructose-1,6-bisphosp 37.2 5.9E+02 0.013 27.9 13.1 158 116-309 27-205 (284)
428 PLN02433 uroporphyrinogen deca 37.2 4.9E+02 0.011 28.5 12.5 54 240-299 279-340 (345)
429 PRK10605 N-ethylmaleimide redu 37.1 1.1E+02 0.0024 34.1 7.6 77 115-196 245-329 (362)
430 cd07939 DRE_TIM_NifV Streptomy 36.8 1.8E+02 0.004 30.4 8.8 75 103-183 125-209 (259)
431 PRK13191 putative peroxiredoxi 36.6 80 0.0017 32.6 6.0 56 113-169 49-105 (215)
432 PRK02935 hypothetical protein; 36.6 18 0.0004 34.5 1.3 20 632-651 60-79 (110)
433 PF00490 ALAD: Delta-aminolevu 36.5 33 0.00071 38.2 3.4 47 117-166 146-193 (324)
434 PRK12376 putative translaldola 36.5 2E+02 0.0043 30.8 9.0 76 98-181 55-132 (236)
435 TIGR02151 IPP_isom_2 isopenten 36.4 1.6E+02 0.0035 32.4 8.6 146 101-282 53-212 (333)
436 COG3867 Arabinogalactan endo-1 36.3 7E+02 0.015 28.5 13.6 151 127-307 72-245 (403)
437 PRK13575 3-dehydroquinate dehy 36.0 1.8E+02 0.004 30.7 8.6 54 112-166 136-191 (238)
438 cd01020 TroA_b Metal binding p 36.0 1.8E+02 0.0039 30.6 8.6 177 98-299 19-230 (264)
439 TIGR00067 glut_race glutamate 36.0 82 0.0018 33.3 6.1 42 118-165 47-89 (251)
440 cd04726 KGPDC_HPS 3-Keto-L-gul 35.8 2E+02 0.0044 28.3 8.5 79 101-191 53-136 (202)
441 PRK10200 putative racemase; Pr 35.8 74 0.0016 33.1 5.7 42 117-165 61-102 (230)
442 cd04735 OYE_like_4_FMN Old yel 35.8 1.9E+02 0.0041 31.9 9.1 160 141-307 73-251 (353)
443 cd06556 ICL_KPHMT Members of t 35.8 65 0.0014 34.1 5.3 44 115-166 153-196 (240)
444 PRK07028 bifunctional hexulose 35.6 2.7E+02 0.0059 31.4 10.4 117 121-263 121-245 (430)
445 PF13344 Hydrolase_6: Haloacid 35.2 73 0.0016 28.9 4.9 55 220-274 19-79 (101)
446 cd04747 OYE_like_5_FMN Old yel 35.0 1.8E+02 0.0039 32.7 8.8 77 115-196 232-336 (361)
447 TIGR00677 fadh2_euk methylenet 34.9 6.2E+02 0.013 27.4 15.0 167 108-279 34-259 (281)
448 PRK00865 glutamate racemase; P 34.8 91 0.002 32.9 6.2 45 118-169 54-98 (261)
449 COG4948 L-alanine-DL-glutamate 34.7 1.9E+02 0.004 31.9 8.8 87 97-186 122-215 (372)
450 TIGR00196 yjeF_cterm yjeF C-te 34.6 2.3E+02 0.0049 29.8 9.0 82 119-234 39-122 (272)
451 PRK13843 conjugal transfer pro 33.9 14 0.0003 38.7 0.1 42 279-320 45-88 (207)
452 PRK06256 biotin synthase; Vali 33.9 6.4E+02 0.014 27.3 17.2 25 114-138 90-114 (336)
453 PHA00616 hypothetical protein 33.8 28 0.00061 28.4 1.8 26 644-669 3-28 (44)
454 PRK05588 histidinol-phosphatas 33.7 1.9E+02 0.004 30.1 8.2 79 216-306 164-242 (255)
455 cd07938 DRE_TIM_HMGL 3-hydroxy 33.7 1.7E+02 0.0036 31.4 8.0 68 114-186 145-223 (274)
456 cd00439 Transaldolase Transald 33.5 5.6E+02 0.012 27.4 11.8 125 101-236 84-211 (252)
457 PRK05848 nicotinate-nucleotide 33.2 1.3E+02 0.0028 32.7 7.1 64 120-186 191-255 (273)
458 PRK05301 pyrroloquinoline quin 33.1 3.2E+02 0.0069 30.0 10.3 29 220-248 79-107 (378)
459 PRK05692 hydroxymethylglutaryl 33.1 95 0.0021 33.5 6.1 68 114-186 151-229 (287)
460 cd01016 TroA Metal binding pro 33.1 2.8E+02 0.006 29.5 9.5 168 98-280 18-217 (276)
461 PRK08645 bifunctional homocyst 33.1 1.6E+02 0.0034 35.2 8.4 136 121-289 128-278 (612)
462 TIGR01579 MiaB-like-C MiaB-lik 33.0 5.2E+02 0.011 29.0 12.0 132 113-296 165-314 (414)
463 cd03146 GAT1_Peptidase_E Type 32.9 2.1E+02 0.0046 29.2 8.3 101 124-243 24-125 (212)
464 cd02932 OYE_YqiM_FMN Old yello 32.8 1.5E+02 0.0033 32.2 7.6 94 98-196 218-328 (336)
465 smart00729 Elp3 Elongator prot 32.7 4.3E+02 0.0092 24.9 12.7 143 115-281 30-188 (216)
466 PF00215 OMPdecase: Orotidine 32.7 5.1E+02 0.011 26.5 11.1 139 113-281 8-160 (226)
467 TIGR01064 pyruv_kin pyruvate k 32.5 8.7E+02 0.019 28.4 14.1 150 124-302 177-336 (473)
468 cd07018 S49_SppA_67K_type Sign 32.4 1.9E+02 0.0041 29.8 7.9 77 114-191 28-108 (222)
469 cd03013 PRX5_like Peroxiredoxi 32.4 1.3E+02 0.0027 29.3 6.3 51 117-175 50-103 (155)
470 PRK05437 isopentenyl pyrophosp 32.4 6.8E+02 0.015 27.9 12.7 83 101-189 60-156 (352)
471 PF09538 FYDLN_acid: Protein o 32.4 17 0.00037 34.4 0.4 14 644-657 11-24 (108)
472 PF00834 Ribul_P_3_epim: Ribul 32.2 95 0.0021 32.0 5.7 100 108-242 5-116 (201)
473 PRK11320 prpB 2-methylisocitra 32.2 76 0.0017 34.7 5.3 48 115-169 163-210 (292)
474 cd01019 ZnuA Zinc binding prot 32.2 1.7E+02 0.0037 31.2 7.8 138 98-252 20-197 (286)
475 COG0856 Orotate phosphoribosyl 32.0 2.5E+02 0.0055 29.5 8.5 115 200-327 15-135 (203)
476 PRK00115 hemE uroporphyrinogen 32.0 6.1E+02 0.013 27.7 12.1 32 240-274 286-317 (346)
477 TIGR02317 prpB methylisocitrat 31.9 75 0.0016 34.6 5.1 48 115-169 158-205 (285)
478 cd00331 IGPS Indole-3-glycerol 31.9 2.8E+02 0.0062 27.9 9.0 64 122-189 85-149 (217)
479 PF01936 NYN: NYN domain; Int 31.8 1E+02 0.0022 28.3 5.4 108 116-250 21-138 (146)
480 PRK08610 fructose-bisphosphate 31.8 4.2E+02 0.0091 29.1 10.7 126 496-641 1-135 (286)
481 cd02933 OYE_like_FMN Old yello 31.7 2.2E+02 0.0048 31.4 8.8 95 210-307 144-257 (338)
482 cd02809 alpha_hydroxyacid_oxid 31.6 1.4E+02 0.0029 32.2 7.0 65 120-187 182-255 (299)
483 PRK11840 bifunctional sulfur c 31.4 6.9E+02 0.015 28.3 12.4 35 265-299 263-300 (326)
484 PRK00208 thiG thiazole synthas 31.4 7.2E+02 0.016 27.2 14.3 145 109-299 66-226 (250)
485 PRK14335 (dimethylallyl)adenos 31.4 8.5E+02 0.018 28.0 14.1 77 223-307 257-341 (455)
486 cd06557 KPHMT-like Ketopantoat 31.3 1E+02 0.0022 33.1 5.9 89 117-231 157-252 (254)
487 PTZ00170 D-ribulose-5-phosphat 31.2 4E+02 0.0087 27.7 10.1 132 115-280 16-157 (228)
488 PRK13190 putative peroxiredoxi 31.1 1.8E+02 0.0039 29.5 7.4 67 102-169 28-99 (202)
489 PRK06801 hypothetical protein; 31.1 5.1E+02 0.011 28.4 11.2 168 113-309 24-206 (286)
490 COG2051 RPS27A Ribosomal prote 31.1 19 0.00042 31.8 0.5 14 640-653 36-49 (67)
491 COG4359 Uncharacterized conser 31.0 54 0.0012 34.5 3.7 21 220-241 78-98 (220)
492 PRK06354 pyruvate kinase; Prov 31.0 2.6E+02 0.0057 33.6 9.7 153 118-302 178-343 (590)
493 PRK15072 bifunctional D-altron 30.9 3E+02 0.0066 30.9 9.8 67 115-184 126-231 (404)
494 PF07745 Glyco_hydro_53: Glyco 30.9 5.1E+02 0.011 29.1 11.3 150 125-307 31-199 (332)
495 PRK03170 dihydrodipicolinate s 30.6 4.6E+02 0.0099 27.9 10.6 106 162-299 11-125 (292)
496 PRK13189 peroxiredoxin; Provis 30.6 1E+02 0.0022 31.9 5.7 67 102-169 36-107 (222)
497 PRK13599 putative peroxiredoxi 30.5 1.1E+02 0.0024 31.6 5.9 55 115-170 46-101 (215)
498 PRK00311 panB 3-methyl-2-oxobu 30.5 1.1E+02 0.0024 33.0 6.1 90 117-232 160-256 (264)
499 PRK06382 threonine dehydratase 30.4 5.4E+02 0.012 29.0 11.7 166 516-738 97-282 (406)
500 PLN02537 diaminopimelate decar 30.4 6.4E+02 0.014 28.2 12.1 30 122-154 100-129 (410)
No 1
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=100.00 E-value=9.2e-213 Score=1753.87 Aligned_cols=733 Identities=88% Similarity=1.359 Sum_probs=698.9
Q ss_pred CCCCCCCcccCCcccccCCCcccccccceeecceeeeccccceeeeeccCCCCcccccccccCCCCCCCccCcccccccc
Q 004623 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESI 80 (741)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YC~s~ 80 (741)
||+|.+|+++.+++.+..+.+|.++.+|.+. +++++.++.++. ++.+++.++++++++++++.|.++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 72 (733)
T PLN02925 1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRI-------CDVRSVSVIRNS-NTGPDLVELQPASEGSPLLVPRQKYCESI 72 (733)
T ss_pred CCcCcCCccccceeccccccccccccchhhh-------hhhhhhhhhhcc-cccchhhcccccCCCCcccchhhhcCcch
Confidence 8999999999999999999999999999666 233445555553 56788999999999999999999999999
Q ss_pred ccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc
Q 004623 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY 160 (741)
Q Consensus 81 ~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~ 160 (741)
|+|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|++|++|+++|+++|+
T Consensus 73 ~~~~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~ 152 (733)
T PLN02925 73 HKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY 152 (733)
T ss_pred hccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeecc
Q 004623 161 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240 (741)
Q Consensus 161 ~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 240 (741)
++||||||||||++|++|++++|||||||||||+++|+|+.++||||||++||++|+++|.+||++||++|+||||||||
T Consensus 153 ~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~ 232 (733)
T PLN02925 153 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232 (733)
T ss_pred CCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCC
Q 004623 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (741)
Q Consensus 241 GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~ 320 (741)
|||+++++++|||||+|||||||||+++||++||+|||||||||||++||+|||+|+++|+++|++|||||||||||+++
T Consensus 233 GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~e 312 (733)
T PLN02925 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGE 312 (733)
T ss_pred cCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccC
Q 004623 321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 400 (741)
Q Consensus 321 ~G~IKSaiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~g 400 (741)
+|+||||+|||+||.||||||||||||+||++||+||++|+++.......+..++.|++..+||++|.||.+..+...+|
T Consensus 313 dg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~~~~~~~~~~~i~~~~~~~~d~~~~~RR~~~~~~~igg 392 (733)
T PLN02925 313 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEG 392 (733)
T ss_pred CceehhHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHHHHhcccccccCCccccCCCCCCCcccccCCcccccCc
Confidence 99999999999999999999999999999999999999999988774334445788999999999999999999999999
Q ss_pred CccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccccc
Q 004623 401 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480 (741)
Q Consensus 401 ~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~k~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~l~~~~~~~ 480 (741)
+.+|++.++|++|+|++.+++++|+.++.+|+.+++++++|||+++.+++|+||++++|+..+.+.+.+|++++++++|+
T Consensus 393 ~~~p~~vi~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~l~~~~~~~~~~~~~~~~~~~d~~~~~ 472 (733)
T PLN02925 393 EEVDYRNVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472 (733)
T ss_pred ccCCeeEEEeccccccccccHhhhccchhhhhccchhhccCcccccccCcceEeecccCCccchhhhhhhheeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999988878888899999999999999
Q ss_pred cccccccccCCCccchhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHH
Q 004623 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 560 (741)
Q Consensus 481 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R 560 (741)
+.|.++....|+++++|+++..++....+..+++..+|+++.++++++|.+..++..+.+++++..|...++.++|+++|
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~e~l~~~~~~~~~~~il~s~~~~~~~~~v~~~R 552 (733)
T PLN02925 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDATMLLHDVPFTEDKVSRVHAAR 552 (733)
T ss_pred ccccchhcccccccceeeeehhhhcccccccccccceeEEeccCCccHHHHHHhhcCCceEEEEeccccccccchHHHHH
Confidence 98866666778899999999988876666677788999999999999999999999999999999444458899999999
Q ss_pred HHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhcccCcc
Q 004623 561 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT 640 (741)
Q Consensus 561 ~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~rlR~~kt 640 (741)
+||++|+++|+++|||||..|++..+.++.+|+||+++|+||+|||||||||+.++.+..+...++|+|||++|+|++||
T Consensus 553 rl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~kt 632 (733)
T PLN02925 553 RLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKT 632 (733)
T ss_pred HHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999999999768899999999999999999999999999998889999999999999999999999
Q ss_pred eeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHH
Q 004623 641 EYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQA 720 (741)
Q Consensus 641 e~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ipeeea 720 (741)
|||||||||||+||||+++++|+++|+||||+||||||||||||||||||||||||++||||+||+|||||+||||+|+|
T Consensus 633 e~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~gpgKI~LYvgKecV~~nIpeeeA 712 (733)
T PLN02925 633 EYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVKRGIAMEEA 712 (733)
T ss_pred eEEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceeccCCCeeEEEecceehhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCC
Q 004623 721 TDALIQLIKDHGRWAEPPAEE 741 (741)
Q Consensus 721 vd~Li~lIk~~g~W~dp~~~~ 741 (741)
||+||+|||+||+|+||+++|
T Consensus 713 vd~LIeLIKe~G~Wvdp~~~~ 733 (733)
T PLN02925 713 TDALIQLIKDHGRWVDPEVEE 733 (733)
T ss_pred HHHHHHHHHHcCcccCCCCCC
Confidence 999999999999999998765
No 2
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=100.00 E-value=3.8e-195 Score=1587.16 Aligned_cols=602 Identities=44% Similarity=0.742 Sum_probs=529.5
Q ss_pred cccccccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhh
Q 004623 76 YCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSL 155 (741)
Q Consensus 76 YC~s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L 155 (741)
-|+++++|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|++|++|+++|
T Consensus 3 ~c~~~~~y~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L 82 (606)
T PRK00694 3 ATPCIQNAFRRKTHPVRIGNLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERL 82 (606)
T ss_pred ccccccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE
Q 004623 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (741)
Q Consensus 156 ~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 235 (741)
++.|+++||||||||||++|++|++++|||||||||||+++|+|+.++||||||++||++|+++|.+||++||++|+|||
T Consensus 83 ~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IR 162 (606)
T PRK00694 83 IQQGISIPLVADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMR 162 (606)
T ss_pred hccCCCCCEEeecCCChHHHHHHHHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccc
Q 004623 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 315 (741)
Q Consensus 236 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTE 315 (741)
||||||||+++++++||+||+|||||||||+++||++||+|||||||||||++||+|||+|+++|+++||+|||||||||
T Consensus 163 IGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d~eg~~YPLHLGVTE 242 (606)
T PRK00694 163 IGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDARGWLYPLHLGVTE 242 (606)
T ss_pred EecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhhccCCCcCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCC
Q 004623 316 AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLP 395 (741)
Q Consensus 316 AG~~~~G~IKSaiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~ 395 (741)
||+|++|+||||+|||+||.||||||||||||+||++||+||++|+++......++.. +++|+|.||.+..+
T Consensus 243 AG~g~~G~IKSavGIG~LL~dGIGDTIRVSLT~dP~~Ev~va~~ll~~~~~~~~~~~~--------~~pf~~~rR~~~~~ 314 (606)
T PRK00694 243 AGSGTDGIIKSAVGIGTLLSEGLGDTIRCSLTGCPTNEIPVCISLLKHTTEYLELPEK--------DNPFALHHSEQFVS 314 (606)
T ss_pred CcCCCCceeHHHHHHHHHHHhCCCCeEEEECCCChHHHHHHHHHHHHHHHHhhccCCC--------CCCCCccccccccc
Confidence 9999999999999999999999999999999999999999999999977666554433 35555666655411
Q ss_pred c-cccCCccccccccccCCceeeeccccccc-chhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHH
Q 004623 396 I-QKEGEEVDYRGVLHRDGSVLMSVSLDQLK-APELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRL 473 (741)
Q Consensus 396 ~-~~~g~~~~~~~~l~~~~~v~~~~~~~~l~-~~~~~~~~~~~k~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~l 473 (741)
. .+.-+..++.+++ +++...++..++. .++.+|+.++.+...|+ +|..++|.+.+...|...+.
T Consensus 315 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~d~~~~~~~~~~~~~~~~~~--------- 380 (606)
T PRK00694 315 ATRKTLKTTPWGNVY---GVFIKLTDVHLLTAEPEELLECLGIDPTTGK--KDFTTPEGVVVPKAMRSSPI--------- 380 (606)
T ss_pred cceeecccCcccccc---chhhccccchhcccchhhhhhhcccccccCC--cccCCccceEEeccccchhh---------
Confidence 1 1111234444444 5665556665555 67888888888877776 56888887776543322211
Q ss_pred hhccccccccccccccCCCccchhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCcc
Q 004623 474 VDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKI 553 (741)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~ 553 (741)
| .+.++.+|+++..++. ...+++++....+.....++ ++. +.+.
T Consensus 381 -----~----------~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~-v~~----~~~~ 424 (606)
T PRK00694 381 -----V----------SELEKHLLVFHHHDVP----------------CLYEMNEEIWLSEEVLSAPF-VHF----HATD 424 (606)
T ss_pred -----c----------cccccceeeechhhcc----------------ccccccHhhhhhhhhhccee-Eec----ccCc
Confidence 1 1122445566554431 01122222222222223333 333 6668
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHh
Q 004623 554 GRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGC 633 (741)
Q Consensus 554 ~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~ 633 (741)
++++++|+||+.|+++ ++|||||..|++. +.++.+|+||+++|+||+|||||+||++.++.+.++++.++|+|||++
T Consensus 425 ~~v~~~R~l~~~l~~~--~~Pvi~~~~~~~~-~~~~~~i~aa~~~G~Ll~DGlGDgi~l~~~~~~~~~~~~laf~ILQaa 501 (606)
T PRK00694 425 PFIHTARRFFSKRQHS--TQPVKLVFSLDPD-SKNEAAIDIATEFGALLLDGLGECVLLDLPNIKLSDVRTIAFGTLQSA 501 (606)
T ss_pred chHHHHHHHHHHHHhc--CCCEEEEEecCCC-chhHHHHHHHHHhhHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999888 7899999999985 788999999999999999999999999999888889999999999999
Q ss_pred hcccCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeee
Q 004623 634 RMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKR 713 (741)
Q Consensus 634 rlR~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r 713 (741)
|+|++|||||||||||||+||||+|+++|+++|+||||+||||||||||||||||||||||||++||||+||+|||||+|
T Consensus 502 R~R~sKte~isCP~CgRtlfdlq~t~~~i~~~t~Hl~g~kIaiMGCiVNGpGEmadAd~GyVG~gpgkI~LY~gKecV~~ 581 (606)
T PRK00694 502 GVRLVKTEYISCPGCGRTLFDLLEVTQRIRERTQHLPGLKIAVMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKA 581 (606)
T ss_pred ccccccceEEECCCCCceeehHHHHHHHHHHHhccCCCceEEEEEeEecCCccccccccceecCCCCeEEEEecceehhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhccccCCCC
Q 004623 714 GIAMEQATDALIQLIKDHGRWAEPP 738 (741)
Q Consensus 714 ~Ipeeeavd~Li~lIk~~g~W~dp~ 738 (741)
|||+|+|+|+||+|||+||+|+||+
T Consensus 582 nIPee~Avd~LI~LIke~G~W~dp~ 606 (606)
T PRK00694 582 HIPMENAEEELVQLLKEHGVWKDPE 606 (606)
T ss_pred CCCHHHHHHHHHHHHHHcCCcCCCC
Confidence 9999999999999999999999994
No 3
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=100.00 E-value=5.5e-193 Score=1580.08 Aligned_cols=608 Identities=43% Similarity=0.692 Sum_probs=551.2
Q ss_pred ccccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC
Q 004623 79 SIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK 158 (741)
Q Consensus 79 s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~ 158 (741)
|+|+|+||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|++|++|+++|+++
T Consensus 2 ~~~~y~Rr~Tr~V~vG~v~iGg~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~ 81 (611)
T PRK02048 2 DLFNYSRRKTSVVNIGATPLGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQ 81 (611)
T ss_pred CccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 159 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 159 ~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
|+++||||||||||++|++|++++|||||||||||+++|+|+.++||||||++||++|+++|++||++||++|+||||||
T Consensus 82 G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGv 161 (611)
T PRK02048 82 GYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGV 161 (611)
T ss_pred CCCCCEEEecCCCcHHHHHHHHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCC
Q 004623 239 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 318 (741)
Q Consensus 239 N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~ 318 (741)
|||||+++++++||+||+|||||||||+++||++||+||||||||||+..||+|||+|+++|+++||+|||||||||||+
T Consensus 162 N~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEAG~ 241 (611)
T PRK02048 162 NHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEAGD 241 (611)
T ss_pred CCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccc
Q 004623 319 GEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQK 398 (741)
Q Consensus 319 ~~~G~IKSaiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~ 398 (741)
+++|+||||+|||+||.||||||||||||++|++|+++|+.|||....+..+. .++..+...+||++|.||.+......
T Consensus 242 ~edg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Ev~vAf~ILQa~r~R~~~~-~~~~~~~~~f~~~~~~rR~~~~~~~i 320 (611)
T PRK02048 242 GEDGRIKSAVGIGALLADGIGDTIRVSLSEEPEAEIPVARKLVDYIRSRENHP-YIPGMEAPGFDYLSPSRRKTRAVRNI 320 (611)
T ss_pred CcCceehhHHHHHHHHhcCCccEEEEeCCCChHHHHHHHHHHHHHHHhhccCC-CCCcccCCCCCCCCcccccccceecc
Confidence 99999999999999999999999999999999999999999999665544322 12223333469999999998733222
Q ss_pred cCCccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhc-CCCCCCchhHHHHHHHHhhcc
Q 004623 399 EGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLR-ELPSVDDHDARLALKRLVDIS 477 (741)
Q Consensus 399 ~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~k~~~g~~~~~~~~~D~i~~~-~~~~~~~~~~~~~l~~l~~~~ 477 (741)
+ |+++..+..+.++.. ...++..++|+||++ ++|...+. ..+++++++
T Consensus 321 g-------------g~~~~~V~~~~~~~~--------------~~~~~~~~~D~i~~~~~~~~~~~~----~~~~~~~~~ 369 (611)
T PRK02048 321 G-------------GDHLPVVIADRMDGD--------------FEFDPQFLPDYIYAGRELPEQREP----GVQYILDAD 369 (611)
T ss_pred C-------------CcccceEEeeccccc--------------cccccCCCCceEeecccccccccc----cceEeeccc
Confidence 2 333334444433321 112677899999998 76644433 234677777
Q ss_pred ccccccccccccCCCccchhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhH
Q 004623 478 MGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQ 557 (741)
Q Consensus 478 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~ 557 (741)
+| .+.++.+|+++.+++... .. ..+..+|+++..++++++.+..++..+.+++++. +++.++++
T Consensus 370 ~~----------~~~~~~~~~~~~~~~~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~ 433 (611)
T PRK02048 370 VW----------KEEPNTWPAFNYAQLELM-ET-CAAELKFLFLPYMALTDEVLACLKAHPEVVVILQ----SNHPNRVG 433 (611)
T ss_pred cc----------cccccceeeeehhhcccc-cc-cccccceEEeccCcccHHHHHHhhcCCceEEEEe----cCCcchHH
Confidence 66 235567778887766422 22 2234699999999999999999999999999988 78899999
Q ss_pred HHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCC-CChhhhhHHHHHHHHHhhcc
Q 004623 558 AARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPG-QDFDFLRDTSFNLLQGCRMR 636 (741)
Q Consensus 558 ~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~-~~~~ei~~~~~~ILQa~rlR 636 (741)
++|+||+.|+++|+++|||||..|++ .+.++.+|+||+++|+||+|||||+||++.++ .+.++++.++|+|||++|+|
T Consensus 434 ~~R~l~~~l~~~g~~~Pvi~~~~~~~-~~~~~~~i~aa~~~G~Ll~DGlgDgi~l~~~~~~~~~~~~~laf~ILQa~r~R 512 (611)
T PRK02048 434 EHRALAHQLMVAGLENPVIFFQHYAE-TTAEDLQLKAAADMGALIFDGLCDGIFLFNQGKLSHVVVDATAFGILQAGRLR 512 (611)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCC-CchHHHHHHHHHhhhHHHhCcccceEEEecCCCccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998 67889999999999999999999999999986 66788899999999999999
Q ss_pred cCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCC
Q 004623 637 NTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIA 716 (741)
Q Consensus 637 ~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ip 716 (741)
++||||||||||||||||||+|+++||++|+||||+||||||||||||||||||||||||++||||+||+|||||+||||
T Consensus 513 ~sKTEyISCPsCGRTLfDLq~tta~Ik~~t~HLkGlkI~IMGCIVNGPGEMADADfGYVG~gpgkI~LY~gke~V~~nIp 592 (611)
T PRK02048 513 TSKTEYISCPGCGRTLYDLQSTIARIKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECVEKNIP 592 (611)
T ss_pred cccceEEECCCCCcchhhHHHHHHHHHHHhCCCCCceEEEEEeEecCCchhhhcccceecCCCCeEEEEeccEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccccC
Q 004623 717 MEQATDALIQLIKDHGRWA 735 (741)
Q Consensus 717 eeeavd~Li~lIk~~g~W~ 735 (741)
+|+|||+|++|||+||+|+
T Consensus 593 ~e~Avd~Li~LIk~~g~W~ 611 (611)
T PRK02048 593 EEEAVERLIELIKANGDWE 611 (611)
T ss_pred HHHHHHHHHHHHHHcCCcC
Confidence 9999999999999999996
No 4
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=100.00 E-value=5.7e-144 Score=1136.01 Aligned_cols=357 Identities=52% Similarity=0.818 Sum_probs=309.1
Q ss_pred ceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeec
Q 004623 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVAD 167 (741)
Q Consensus 88 Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVAD 167 (741)
||+|+||+|+|||+|||+|||||||+|.|+++|++||++|++||||||||||||+++|++|++|+++|+++|+++|||||
T Consensus 1 Tr~V~VG~v~IGG~~PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVAD 80 (359)
T PF04551_consen 1 TRQVRVGNVPIGGGAPISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVAD 80 (359)
T ss_dssp ---EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEE
T ss_pred CcEEEEcCEeecCCCCEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHH
Q 004623 168 IHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI 247 (741)
Q Consensus 168 IHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~i 247 (741)
|||||++||+|++++||||||||||++ +|++++..++++|++||++||++|+|||||||||||++++
T Consensus 81 IHFd~~lAl~a~~~v~kiRINPGNi~~-------------~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~ 147 (359)
T PF04551_consen 81 IHFDYRLALEAIEAVDKIRINPGNIVD-------------EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDI 147 (359)
T ss_dssp ESTTCHHHHHHHHC-SEEEE-TTTSS-----------------SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHH
T ss_pred cCCCHHHHHHHHHHhCeEEECCCcccc-------------cccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHH
Confidence 999999999999999999999999985 6888999999999999999999999999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhH
Q 004623 248 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 327 (741)
Q Consensus 248 l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IKSa 327 (741)
++|||+||+||||||++|+++||++||+||+||+||||++.|++|||+|+++ +||||||||||||++.+|+||||
T Consensus 148 ~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~-----~dyPLHLGvTEAG~~~~g~IkSs 222 (359)
T PF04551_consen 148 LEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDVPETIEAYRLLAER-----MDYPLHLGVTEAGTGEDGTIKSS 222 (359)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH-------S-EEEEBSSEESCHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHh-----cCCCeEEeecCCCCcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccCCcccccc
Q 004623 328 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRG 407 (741)
Q Consensus 328 iGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~g~~~~~~~ 407 (741)
+|||+||.||||||||||||+||++||++||
T Consensus 223 igiG~LL~~GIGDTIRVSLt~~p~~EV~va~------------------------------------------------- 253 (359)
T PF04551_consen 223 IGIGALLLDGIGDTIRVSLTGDPVEEVKVAF------------------------------------------------- 253 (359)
T ss_dssp HHHHHHHHTT--SEEEE-ECSSCCCHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHcCCCCEEEEECCCCchHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999999988763
Q ss_pred ccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhcccccccccccc
Q 004623 408 VLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQ 487 (741)
Q Consensus 408 ~l~~~~~v~~~~~~~~l~~~~~~~~~~~~k~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~ 487 (741)
T Consensus 254 -------------------------------------------------------------------------------- 253 (359)
T PF04551_consen 254 -------------------------------------------------------------------------------- 253 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccchhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHHHH
Q 004623 488 LTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLS 567 (741)
Q Consensus 488 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~ 567 (741)
T Consensus 254 -------------------------------------------------------------------------------- 253 (359)
T PF04551_consen 254 -------------------------------------------------------------------------------- 253 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhcccCcceeecCCC
Q 004623 568 ENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPS 647 (741)
Q Consensus 568 ~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~rlR~~kte~ISCPs 647 (741)
+|||++|+|.++++||||||
T Consensus 254 ------------------------------------------------------------~IL~al~lR~~g~~~ISCPt 273 (359)
T PF04551_consen 254 ------------------------------------------------------------EILQALGLRKRGPEIISCPT 273 (359)
T ss_dssp ------------------------------------------------------------HHHHHTTSS-SS-EEEE---
T ss_pred ------------------------------------------------------------HHHHHhCcCcCCceeeeCCC
Confidence 34778899999999999999
Q ss_pred CccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHHHH
Q 004623 648 CGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 726 (741)
Q Consensus 648 CGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ipeeeavd~Li~ 726 (741)
||||+||||+++++|+++|.|+| |+|||||||||||||||+||||||+||++|++.||++|++|++.+|+++++|+|++
T Consensus 274 CGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~L~~ 353 (359)
T PF04551_consen 274 CGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDELIE 353 (359)
T ss_dssp -TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999998889999999999999987799999999999
Q ss_pred HHHhc
Q 004623 727 LIKDH 731 (741)
Q Consensus 727 lIk~~ 731 (741)
+|+++
T Consensus 354 ~I~~~ 358 (359)
T PF04551_consen 354 LIEEH 358 (359)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99986
No 5
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=100.00 E-value=4.1e-139 Score=1091.63 Aligned_cols=343 Identities=46% Similarity=0.730 Sum_probs=332.5
Q ss_pred CCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccce
Q 004623 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPL 164 (741)
Q Consensus 85 Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPL 164 (741)
||+||+|+||+|+|||+|||+|||||||+|+|+++|++||++|++|||||||+||||+++|++|++|++ ++++||
T Consensus 1 Rr~tr~V~VG~v~IGG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~-----~~~iPl 75 (346)
T TIGR00612 1 RRKTRSVRVGAVPVGGDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE-----GTNVPL 75 (346)
T ss_pred CCcceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh-----CCCCCE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 599999
Q ss_pred eeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCC
Q 004623 165 VADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (741)
Q Consensus 165 VADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL 243 (741)
||||||||++|++|++. +|||||||||||+. ++|++||++||++|+|||||||||||
T Consensus 76 VADIHFd~~lAl~a~~~g~dkiRINPGNig~~----------------------e~v~~vv~~ak~~~ipIRIGVN~GSL 133 (346)
T TIGR00612 76 VADIHFDYRLAALAMAKGVAKVRINPGNIGFR----------------------ERVRDVVEKARDHGKAMRIGVNHGSL 133 (346)
T ss_pred EEeeCCCcHHHHHHHHhccCeEEECCCCCCCH----------------------HHHHHHHHHHHHCCCCEEEecCCCCC
Confidence 99999999999999998 99999999999984 37999999999999999999999999
Q ss_pred cHHHHhhcC-CCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCC
Q 004623 244 SDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322 (741)
Q Consensus 244 ~~~il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G 322 (741)
+++++++|| +||+||||||++|+++||++||+||+||||||||++|++|||+|+++ +||||||||||||++.+|
T Consensus 134 ~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~-----~dyPLHlGVTEAG~~~~G 208 (346)
T TIGR00612 134 ERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAER-----SDYPLHLGVTEAGMGVKG 208 (346)
T ss_pred cHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhh-----CCCCceeccccCCCCCCc
Confidence 999999999 79999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred chhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccCCc
Q 004623 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEE 402 (741)
Q Consensus 323 ~IKSaiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~g~~ 402 (741)
+||||+|||+||.+|||||||||||+||++||+|||+|
T Consensus 209 ~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV~va~~I------------------------------------------ 246 (346)
T TIGR00612 209 IVKSSAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEI------------------------------------------ 246 (346)
T ss_pred hhHHHHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHH------------------------------------------
Confidence 99999999999999999999999999999999998555
Q ss_pred cccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccccccc
Q 004623 403 VDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVIT 482 (741)
Q Consensus 403 ~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~k~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 482 (741)
T Consensus 247 -------------------------------------------------------------------------------- 246 (346)
T TIGR00612 247 -------------------------------------------------------------------------------- 246 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCccchhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHH
Q 004623 483 PLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRL 562 (741)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l 562 (741)
T Consensus 247 -------------------------------------------------------------------------------- 246 (346)
T TIGR00612 247 -------------------------------------------------------------------------------- 246 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhcccCccee
Q 004623 563 FEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEY 642 (741)
Q Consensus 563 ~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~rlR~~kte~ 642 (741)
||++++|.+++++
T Consensus 247 -------------------------------------------------------------------L~slglr~~g~~i 259 (346)
T TIGR00612 247 -------------------------------------------------------------------LQSLGLRARGVEI 259 (346)
T ss_pred -------------------------------------------------------------------HHHcCCCcCCCeE
Confidence 5667889999999
Q ss_pred ecCCCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHH
Q 004623 643 VSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQAT 721 (741)
Q Consensus 643 ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ipeeeav 721 (741)
|||||||||.|||+++++++++++.|++ ++|||||||+||||||++||||||+||++|...||+++++++ ++|+++++
T Consensus 260 iSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~-kv~~~~~~ 338 (346)
T TIGR00612 260 VACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKA-KQPETDMA 338 (346)
T ss_pred EECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeE-ecCHHHHH
Confidence 9999999999999999999999999998 899999999999999999999999998899999999999988 59999999
Q ss_pred HHHHHHHH
Q 004623 722 DALIQLIK 729 (741)
Q Consensus 722 d~Li~lIk 729 (741)
|+|+++|+
T Consensus 339 ~~l~~~i~ 346 (346)
T TIGR00612 339 DELIRLIQ 346 (346)
T ss_pred HHHHHhcC
Confidence 99999874
No 6
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=100.00 E-value=1.2e-137 Score=1076.63 Aligned_cols=355 Identities=45% Similarity=0.737 Sum_probs=344.2
Q ss_pred ccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCccc
Q 004623 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNI 162 (741)
Q Consensus 83 ~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~i 162 (741)
.+|||||+|+||+|+|||+|||+|||||||+|.|+++|++||++|+++||||||||||++++|+|+++|+++ .++
T Consensus 1 ~~Rrktr~v~VG~V~vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~-----~~v 75 (361)
T COG0821 1 IPRRKTRQVKVGNVPVGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQR-----LNV 75 (361)
T ss_pred CCcccceeEEECCEeecCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh-----CCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999998 699
Q ss_pred ceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccC
Q 004623 163 PLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 241 (741)
Q Consensus 163 PLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G 241 (741)
||||||||||++|+.++++ +||+||||||||+++ +|++||++||++|+|||||||||
T Consensus 76 PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~----------------------~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 76 PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKD----------------------RVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHH----------------------HHHHHHHHHHHcCCCEEEecccC
Confidence 9999999999999999999 999999999999844 69999999999999999999999
Q ss_pred CCcHHHHhhcC-CCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCC
Q 004623 242 SLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (741)
Q Consensus 242 SL~~~il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~ 320 (741)
||++++++||| +||||||||||+|+++||++||+||+||||+|||++||+|||+||++ +||||||||||||+++
T Consensus 134 SLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~~-----~dyPLHLGvTEAG~~~ 208 (361)
T COG0821 134 SLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAKR-----CDYPLHLGVTEAGMGF 208 (361)
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHh-----cCCCcccceecccCcc
Confidence 99999999996 89999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccC
Q 004623 321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 400 (741)
Q Consensus 321 ~G~IKSaiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~g 400 (741)
+|+||||+|||.||++|||||||||||++|++||+||++|
T Consensus 209 ~G~VkSa~alg~LL~eGIGDTIRVSLt~~P~~EV~V~~eI---------------------------------------- 248 (361)
T COG0821 209 KGIVKSAAALGALLSEGIGDTIRVSLTADPVEEVKVAQEI---------------------------------------- 248 (361)
T ss_pred cceehHHHHHHHHHHhcCCceEEEecCCCchhhhHHHHHH----------------------------------------
Confidence 9999999999999999999999999999999999998555
Q ss_pred CccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccccc
Q 004623 401 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480 (741)
Q Consensus 401 ~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~k~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~l~~~~~~~ 480 (741)
T Consensus 249 -------------------------------------------------------------------------------- 248 (361)
T COG0821 249 -------------------------------------------------------------------------------- 248 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCccchhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHH
Q 004623 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 560 (741)
Q Consensus 481 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R 560 (741)
T Consensus 249 -------------------------------------------------------------------------------- 248 (361)
T COG0821 249 -------------------------------------------------------------------------------- 248 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhcccCcc
Q 004623 561 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT 640 (741)
Q Consensus 561 ~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~rlR~~kt 640 (741)
||++|+|.+++
T Consensus 249 ---------------------------------------------------------------------LqslglR~~~v 259 (361)
T COG0821 249 ---------------------------------------------------------------------LQSLGLRSRGV 259 (361)
T ss_pred ---------------------------------------------------------------------HHHhCccccCc
Confidence 66678899999
Q ss_pred eeecCCCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhH
Q 004623 641 EYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQ 719 (741)
Q Consensus 641 e~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ipeee 719 (741)
+|||||+||||+||+.++++++++++.|++ |++||||||||||||||+|||+||+|++++...+|++++++++ +|+++
T Consensus 260 ~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~-~~~~~ 338 (361)
T COG0821 260 EVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKK-LPEED 338 (361)
T ss_pred eEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEe-cChhh
Confidence 999999999999999999999999999998 8999999999999999999999999998999999999999996 99999
Q ss_pred HHHHHHHHHHhccccCCCCC
Q 004623 720 ATDALIQLIKDHGRWAEPPA 739 (741)
Q Consensus 720 avd~Li~lIk~~g~W~dp~~ 739 (741)
++|+|+++|+++.+|.++..
T Consensus 339 ~~eel~~~i~~~~~~~~~~~ 358 (361)
T COG0821 339 IVEELEALIEAYAEERDGEL 358 (361)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999998764
No 7
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=100.00 E-value=5.5e-133 Score=1051.98 Aligned_cols=349 Identities=45% Similarity=0.740 Sum_probs=334.7
Q ss_pred ccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc
Q 004623 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY 160 (741)
Q Consensus 81 ~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~ 160 (741)
..++||+||+|+||+|+|||+|||+|||||||+|+|+++|++||++|++|||||||+||||+++|++|++|+++ +
T Consensus 5 ~~~~Rr~tr~V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~-----~ 79 (360)
T PRK00366 5 TPIPRRKTRQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQ-----L 79 (360)
T ss_pred cccccccceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHc-----C
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred ccceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec
Q 004623 161 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (741)
Q Consensus 161 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 239 (741)
++||||||||||++|++|+++ +|||||||||||+. +++|++||++||++|+|||||||
T Consensus 80 ~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~---------------------~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 80 PVPLVADIHFDYRLALAAAEAGADALRINPGNIGKR---------------------DERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred CCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCch---------------------HHHHHHHHHHHHHCCCCEEEecC
Confidence 999999999999999999998 99999999999872 34799999999999999999999
Q ss_pred cCCCcHHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCC
Q 004623 240 HGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 318 (741)
Q Consensus 240 ~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~ 318 (741)
||||+++++++||+ ||+||||||++|+++||++||+||+||||||||++||+|||+|+++ +||||||||||||+
T Consensus 139 ~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~-----~dyPLHlGvTEAG~ 213 (360)
T PRK00366 139 AGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKR-----CDYPLHLGVTEAGM 213 (360)
T ss_pred CccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhc-----CCCCceecccCCCC
Confidence 99999999999995 9999999999999999999999999999999999999999999999 89999999999999
Q ss_pred CCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccc
Q 004623 319 GEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQK 398 (741)
Q Consensus 319 ~~~G~IKSaiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~ 398 (741)
+.+|+||||+|||+||.+|||||||||||+||++||+|||+|
T Consensus 214 ~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~va~~I-------------------------------------- 255 (360)
T PRK00366 214 GFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKVGQEI-------------------------------------- 255 (360)
T ss_pred CCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHH--------------------------------------
Confidence 999999999999999999999999999999999999998655
Q ss_pred cCCccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccc
Q 004623 399 EGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISM 478 (741)
Q Consensus 399 ~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~k~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~l~~~~~ 478 (741)
T Consensus 256 -------------------------------------------------------------------------------- 255 (360)
T PRK00366 256 -------------------------------------------------------------------------------- 255 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCccchhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHH
Q 004623 479 GVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQA 558 (741)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~ 558 (741)
T Consensus 256 -------------------------------------------------------------------------------- 255 (360)
T PRK00366 256 -------------------------------------------------------------------------------- 255 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhcccC
Q 004623 559 ARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNT 638 (741)
Q Consensus 559 ~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~rlR~~ 638 (741)
||++++|.+
T Consensus 256 -----------------------------------------------------------------------L~slglr~~ 264 (360)
T PRK00366 256 -----------------------------------------------------------------------LQSLGLRSR 264 (360)
T ss_pred -----------------------------------------------------------------------HHHcCCccC
Confidence 556788999
Q ss_pred cceeecCCCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCCh
Q 004623 639 KTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAM 717 (741)
Q Consensus 639 kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ipe 717 (741)
+++++|||+|||+.+|++.+++++++++.+++ |+|||||||+||||||+++||||++|+ +++..+|+++++|+ ++|+
T Consensus 265 g~~IisCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~-~~~~~vf~~Gk~v~-kv~~ 342 (360)
T PRK00366 265 GPEVISCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGG-NPKGPVFVDGEKIK-TLPE 342 (360)
T ss_pred CCeEEECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecC-CCceEEEECCEEee-eeCh
Confidence 99999999999999999999999999999998 899999999999999999999999997 55678999999999 5999
Q ss_pred hHHHHHHHHHHHhc
Q 004623 718 EQATDALIQLIKDH 731 (741)
Q Consensus 718 eeavd~Li~lIk~~ 731 (741)
++++|+|+++|++.
T Consensus 343 ~~~~~~l~~~i~~~ 356 (360)
T PRK00366 343 ENIVEELEAEIEAY 356 (360)
T ss_pred HhHHHHHHHHHHHH
Confidence 99999999999864
No 8
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=99.81 E-value=3.2e-20 Score=206.74 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=92.0
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004623 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 617 (741)
.+++|||| +||...|+++||+|++++.++|++||| ||||||||++++|+||||+|||+||.|||||||||||+++
T Consensus 202 ~diviS~K---sSnv~~mi~AyrlLa~~~d~eg~~YPL--HLGVTEAG~g~~G~IKSavGIG~LL~dGIGDTIRVSLT~d 276 (606)
T PRK00694 202 RDVVFSMK---SSNPKVMVAAYRQLAKDLDARGWLYPL--HLGVTEAGSGTDGIIKSAVGIGTLLSEGLGDTIRCSLTGC 276 (606)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHHHhhccCCCcCc--eeccccCcCCCCceeHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 48999999 999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhHHHHHHHHHhhcccCc
Q 004623 618 DFDFLRDTSFNLLQGCRMRNTK 639 (741)
Q Consensus 618 ~~~ei~~~~~~ILQa~rlR~~k 639 (741)
|++|+ ++|+.||+...-|...
T Consensus 277 P~~Ev-~va~~ll~~~~~~~~~ 297 (606)
T PRK00694 277 PTNEI-PVCISLLKHTTEYLEL 297 (606)
T ss_pred hHHHH-HHHHHHHHHHHHhhcc
Confidence 99998 7999999999877644
No 9
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=99.79 E-value=1.5e-19 Score=202.72 Aligned_cols=146 Identities=21% Similarity=0.290 Sum_probs=113.5
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004623 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 617 (741)
.+++|||| +|+..++|++||+|+++|.++|++||| ||++||+|++++++||||+|+|+||+||||||||||++++
T Consensus 198 ~diviS~K---sS~~~~~V~AyRlLa~~l~~~g~dyPL--HLGvTEAG~~edg~IKSAigiGaLL~DGIGDTIRVSlt~d 272 (611)
T PRK02048 198 TDVVISIK---ASNTVVMVRTVRLLVAVMEAEGMHYPL--HLGVTEAGDGEDGRIKSAVGIGALLADGIGDTIRVSLSEE 272 (611)
T ss_pred CcEEEEEE---eCCcHHHHHHHHHHHHHHHhcCCCCce--EEEEecCCCCcCceehhHHHHHHHHhcCCccEEEEeCCCC
Confidence 48999999 999999999999999999999999999 9999999999999999999999999999999999999988
Q ss_pred ChhhhhHHHHHHHHHhhcccCcc--eeecCCCCccccccHHHHHHHHHHHh----cCCCCcEEEEeeeeecC-C--CCCC
Q 004623 618 DFDFLRDTSFNLLQGCRMRNTKT--EYVSCPSCGRTLFDLQEISAEIREKT----SHLPGVSIAIMGCIVNG-P--GEMA 688 (741)
Q Consensus 618 ~~~ei~~~~~~ILQa~rlR~~kt--e~ISCPsCGRTlfDLq~~~~~Ik~~t----~hLkgvkIAVMGCIVNG-P--GEma 688 (741)
|++++ ++||+|||+.|.|.... .....|. ||.....+|..... ++.+++.+.-+ -++ + -..+
T Consensus 273 P~~Ev-~vAf~ILQa~r~R~~~~~~~~~~~~~-----f~~~~~~rR~~~~~~~igg~~~~~V~~~~---~~~~~~~~~~~ 343 (611)
T PRK02048 273 PEAEI-PVARKLVDYIRSRENHPYIPGMEAPG-----FDYLSPSRRKTRAVRNIGGDHLPVVIADR---MDGDFEFDPQF 343 (611)
T ss_pred hHHHH-HHHHHHHHHHHhhccCCCCCcccCCC-----CCCCCcccccccceeccCCcccceEEeec---cccccccccCC
Confidence 88776 89999999999998643 1111121 67666665544433 33333433332 111 1 1223
Q ss_pred CCceeeecC
Q 004623 689 DADFGYVGG 697 (741)
Q Consensus 689 DAD~GyvGg 697 (741)
-+||-|.|.
T Consensus 344 ~~D~i~~~~ 352 (611)
T PRK02048 344 LPDYIYAGR 352 (611)
T ss_pred CCceEeecc
Confidence 578888874
No 10
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=99.69 E-value=4.2e-17 Score=185.20 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=87.9
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004623 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 617 (741)
.+++|||| +||...+|+++|+|+++|.++|++||| ||++||+|++++++||||+++|+||+||||||||||++++
T Consensus 267 ~diviS~K---sSn~~~~V~AyR~La~~L~~~g~~yPL--hLgvTEAG~~edg~IKSAigiGaLL~DGIGDTIRVSlt~d 341 (733)
T PLN02925 267 HNFVFSMK---ASNPVVMVQAYRLLVAEMYVLGWDYPL--HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEP 341 (733)
T ss_pred CcEEEEEE---cCChHHHHHHHHHHHHHHHhcCCCCce--EEEEecCCCCcCceehhHHHHHHHHhcCCccEEEEECCCC
Confidence 48999999 999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhHHHHHHHHHhhc
Q 004623 618 DFDFLRDTSFNLLQGCRM 635 (741)
Q Consensus 618 ~~~ei~~~~~~ILQa~rl 635 (741)
|++|+ ++|+.|+....-
T Consensus 342 P~~Ev-pva~~Lv~~~~~ 358 (733)
T PLN02925 342 PEEEI-DPCRRLANLGMK 358 (733)
T ss_pred chhhc-hHHHHHHHHHHh
Confidence 99998 899999887644
No 11
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=99.63 E-value=5.7e-16 Score=164.65 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=71.7
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004623 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 617 (741)
+++++|+| +|+...++.+||+|.++ ++||| |||+||||.+.+|+||||+|||+||.|||||||||||+++
T Consensus 166 ~diviS~K---sSdv~~~i~ayr~la~~-----~dyPL--HlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~d 235 (346)
T TIGR00612 166 RNVVLSMK---ASDVAETVAAYRLLAER-----SDYPL--HLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDD 235 (346)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHhh-----CCCCc--eeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 48999999 99999999999999874 57999 9999999999999999999999999999999999999999
Q ss_pred Chhhhh
Q 004623 618 DFDFLR 623 (741)
Q Consensus 618 ~~~ei~ 623 (741)
|++|+.
T Consensus 236 P~~EV~ 241 (346)
T TIGR00612 236 PTHEVP 241 (346)
T ss_pred cHHHHH
Confidence 998873
No 12
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=99.63 E-value=4.3e-16 Score=166.58 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=89.4
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004623 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 617 (741)
+++++|+| +|+...++++||+|.++ ++||| |||+||||.+.+|+||||+|||+||.|||||||||||+++
T Consensus 175 ~~iviS~K---sS~v~~~i~ayrlla~~-----~dyPL--HlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~ 244 (360)
T PRK00366 175 DDIKISVK---ASDVQDLIAAYRLLAKR-----CDYPL--HLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTAD 244 (360)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHhc-----CCCCc--eecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCC
Confidence 58999999 99999999999999875 48999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhHHHHHHHHHhhcccCcc--eeecCCCCccccccHHHHHHHHHHHhcCCCC
Q 004623 618 DFDFLRDTSFNLLQGCRMRNTKT--EYVSCPSCGRTLFDLQEISAEIREKTSHLPG 671 (741)
Q Consensus 618 ~~~ei~~~~~~ILQa~rlR~~kt--e~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkg 671 (741)
|++|++ .-.-=++.-+. .-+.=-+|--+-.-.+++..-.++.-..+.+
T Consensus 245 P~~EV~------va~~IL~slglr~~g~~IisCPgCgR~~~D~~~la~~vee~~~~ 294 (360)
T PRK00366 245 PVEEVK------VGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVEQRLEH 294 (360)
T ss_pred CHHHHH------HHHHHHHHcCCccCCCeEEECCCCCCCcccHHHHHHHHHHHhcC
Confidence 998874 11212222222 2234444555444455555555554455553
No 13
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=99.56 E-value=3.2e-15 Score=160.07 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=66.2
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004623 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 617 (741)
+++++|+| +|+...++++||+|.+++. ||| |+|+||||..++++||||+++|+||.||||||||||++++
T Consensus 175 ~~iviSlK---sSdv~~~i~ayr~la~~~d-----yPL--HLGvTEAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~ 244 (359)
T PF04551_consen 175 DDIVISLK---SSDVPETIEAYRLLAERMD-----YPL--HLGVTEAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGD 244 (359)
T ss_dssp GGEEEEEE---BSSHHHHHHHHHHHHHH-------S-E--EEEBSSEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSS
T ss_pred CcEEEEEE---eCChHHHHHHHHHHHHhcC-----CCe--EEeecCCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCC
Confidence 48999999 9999999999999999764 998 9999999999999999999999999999999999999999
Q ss_pred Chhhh
Q 004623 618 DFDFL 622 (741)
Q Consensus 618 ~~~ei 622 (741)
|++|+
T Consensus 245 p~~EV 249 (359)
T PF04551_consen 245 PVEEV 249 (359)
T ss_dssp CCCHH
T ss_pred chHHH
Confidence 99876
No 14
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=99.51 E-value=1.9e-14 Score=152.91 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=71.3
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004623 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (741)
Q Consensus 538 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 617 (741)
+++++|+| .|+...+|.+||.|.++ ++||| |||+||||.+..|.||||+++|.||.+||||||||||+++
T Consensus 168 ~~i~iS~K---~Sdv~~~v~aYr~lA~~-----~dyPL--HLGvTEAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~~ 237 (361)
T COG0821 168 DDIKVSVK---ASDVQLMVAAYRLLAKR-----CDYPL--HLGVTEAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTAD 237 (361)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHHh-----cCCCc--ccceecccCcccceehHHHHHHHHHHhcCCceEEEecCCC
Confidence 48999999 99999999999999874 57999 9999999999999999999999999999999999999999
Q ss_pred Chhhh
Q 004623 618 DFDFL 622 (741)
Q Consensus 618 ~~~ei 622 (741)
|++|+
T Consensus 238 P~~EV 242 (361)
T COG0821 238 PVEEV 242 (361)
T ss_pred chhhh
Confidence 99887
No 15
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=98.21 E-value=9.5e-05 Score=83.02 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=151.6
Q ss_pred cccccccCCCceeEEEce----eecCCC-----------CceEEEeccCCCCCCHHHHHHHHHHH-----HHcC----CC
Q 004623 78 ESIHKTVRRKTRTVMVGN----VAIGSE-----------HPIRVQTMTTNDTKDVAGTVEEVMRI-----ADQG----AD 133 (741)
Q Consensus 78 ~s~~~~~Rr~Tr~V~VG~----V~IGG~-----------~PI~VQSMt~t~T~Dv~atv~Qi~~L-----~~aG----ce 133 (741)
+.+.....-+-|+|.+|. +.|||+ ||.+|=-.- .|+.+-+.-.+.++.+ ++.| +|
T Consensus 51 ~~l~~~~~ppi~~V~iG~G~~~~~iGGEtvL~rhe~tf~np~~Ia~eI-~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD 129 (450)
T PRK04165 51 EKLEEASAPPIREVKIGTGERAVKIGGETVLYRHEKTFFNPTGIAVDV-SDTMDDEEIDARLKKINNFQFERVGEILKLD 129 (450)
T ss_pred HHHHHHhCCCceeeeecCCCeEEEECCcceeeecCcCCCCCCEEEEEE-eCCCChHHHHHHHHHhhcchHhhhcccccCC
Confidence 345555566778899984 889995 566665555 7888888888888888 7777 99
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCcee--eCCCCCCchhhhccccccchHHHHH
Q 004623 134 LVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIR--VNPGNFADRRAQFEQLEYTDDEYQK 211 (741)
Q Consensus 134 iVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ 211 (741)
+|-+-..+. +.+.+..+.+.+.+ .+++||+-|- ||+..+.+|++.....| ||.-|.
T Consensus 130 ~IaL~~~s~-dp~~v~~~Vk~V~~-~~dvPLSIDT-~dpevleaAleagad~~plI~Sat~------------------- 187 (450)
T PRK04165 130 MVALRNASG-DPEKFAKAVKKVAE-TTDLPLILCS-EDPAVLKAALEVVADRKPLLYAATK------------------- 187 (450)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHH-hcCCCEEEeC-CCHHHHHHHHHhcCCCCceEEecCc-------------------
Confidence 999987665 33344444444443 2689999998 99999999999853333 555543
Q ss_pred HHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHH
Q 004623 212 ELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQ 291 (741)
Q Consensus 212 ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~ 291 (741)
+++.++.+.|+++|.|+ |... . . ++++.+.++.|+++|+.||++.-=..+...+++
T Consensus 188 ------dN~~~m~~la~~yg~pv-Vv~~-----~----------d--l~~L~~lv~~~~~~GI~dIILDPg~ggf~ksl~ 243 (450)
T PRK04165 188 ------ENYEEMAELAKEYNCPL-VVKA-----P----------N--LEELKELVEKLQAAGIKDLVLDPGTENIKETLD 243 (450)
T ss_pred ------chHHHHHHHHHHcCCcE-EEEc-----h----------h--HHHHHHHHHHHHHcCCCcEEECCCCchhhhhHH
Confidence 14667899999999999 2211 0 1 788899999999999999999876666777777
Q ss_pred HHHHHHHH---hhcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEE
Q 004623 292 AYRLLVAE---MYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRV 344 (741)
Q Consensus 292 Ayrlla~~---m~~~g~dyPLHLGVTEAG~~~~G~IKSaiGIG~LL~~GIGDTIRV 344 (741)
-|.++.+. ..-+-..||+=.|++++-. .+...=++--.+++..| ||-+-+
T Consensus 244 ~~~~iRr~Al~~~~~~lgyPil~~~s~k~~--~~~~~E~~~As~~~~ky-a~i~Vl 296 (450)
T PRK04165 244 DFVQIRRAAIKKGDRPLGYPIIAFPIEAWM--SDPMKEAAIASTLIAKY-ADILVL 296 (450)
T ss_pred HHHHHHhhhhhcccccCCCCEEEcchhhcc--cchHHHHHHHHHHHHhC-CcEEEE
Confidence 77766655 3444567999999998765 34444444333444433 344433
No 16
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=97.71 E-value=0.0028 Score=66.34 Aligned_cols=193 Identities=16% Similarity=0.241 Sum_probs=131.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec----C------CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-c
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITV----Q------GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-F 182 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvav----p------~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-v 182 (741)
+.|.+..++++.++.++||+|+=|-. | -.++.+.+..+.+.|++ .+++||.-|. |++..+.+|++. +
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~-~~~~plSIDT-~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRG-ELDVLISVDT-FRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCcEEEeC-CCHHHHHHHHHhCC
Confidence 46899999999999999999999942 2 23455555555555553 3589999997 779999999987 3
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHH--HhhcCCCchHHHH
Q 004623 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVE 260 (741)
Q Consensus 183 dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~i--l~~yg~t~~amVe 260 (741)
+ + ||-=+-...+ .++.+.++++|.++=+ ......++.. ...|.+..+.+++
T Consensus 98 ~-i-INdisg~~~~------------------------~~~~~l~~~~~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~ 150 (257)
T cd00739 98 D-I-INDVSGGSDD------------------------PAMLEVAAEYGAPLVL-MHMRGTPKTMQENPYYEDVVDEVLS 150 (257)
T ss_pred C-E-EEeCCCCCCC------------------------hHHHHHHHHcCCCEEE-ECCCCCCcccccCCCcccHHHHHHH
Confidence 3 2 5543332211 2467888899999855 4333354432 1235566789999
Q ss_pred HHHHHHHHHHHCCCC--ceEEE-----Eec-CChhHHHHHHHHHHHHhhcCCCCccccccc---------cccCCCCCCc
Q 004623 261 SAFEFARICRKLDFH--NFLFS-----MKA-SNPVVMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGR 323 (741)
Q Consensus 261 SAle~~~i~e~~~F~--diviS-----~Ka-Snv~~~i~Ayrlla~~m~~~g~dyPLHLGV---------TEAG~~~~G~ 323 (741)
.+.+.++.|++.|+. +|++- .|+ ..-..++++++.|.+. ++|+-+|+ ||- ....+
T Consensus 151 ~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~------~~pil~G~SrkSfig~~~~~--~~~~r 222 (257)
T cd00739 151 FLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQL------GLPVLVGASRKSFIGALLGR--EPKDR 222 (257)
T ss_pred HHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhC------CCcEEEEecccHHHHHhcCC--Ccccc
Confidence 999999999999995 77753 233 1124567777777764 89999998 653 33456
Q ss_pred hhhHHHHHH-HhhcCCCceeEE
Q 004623 324 MKSAIGIGT-LLQDGLGDTIRV 344 (741)
Q Consensus 324 IKSaiGIG~-LL~~GIGDTIRV 344 (741)
.-.++++.. +...| .|=|||
T Consensus 223 ~~~t~~~~~~~~~~G-a~iiRv 243 (257)
T cd00739 223 DWGTLALSALAAANG-ADIVRV 243 (257)
T ss_pred chhHHHHHHHHHHcC-CCEEEe
Confidence 665666655 55556 478886
No 17
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=97.55 E-value=0.012 Score=67.26 Aligned_cols=227 Identities=15% Similarity=0.141 Sum_probs=150.1
Q ss_pred eEEEceeecCCCC-ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhhccCCcccceeec
Q 004623 90 TVMVGNVAIGSEH-PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVAD 167 (741)
Q Consensus 90 ~V~VG~V~IGG~~-PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~-~~A~al~~I~~~L~~~~~~iPLVAD 167 (741)
...||++.||+.. |++|=..-..-+. .+..+++..++.++|||||=|-..+. ..++.+..+.+.|++. +++|+.-|
T Consensus 137 ~~~i~~~~i~~~~p~~~v~aEI~~a~~-l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~-~~~pISID 214 (499)
T TIGR00284 137 DFRIGSLKIPLKPPPLRVVAEIPPTVA-EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDA-LDSPVIAD 214 (499)
T ss_pred hhhccCcCCCCCCCCeEEEEEEcCCcc-hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhh-CCCcEEEe
Confidence 4788999999999 6999988754332 28899999999999999999976533 3444455555555543 47999999
Q ss_pred cCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHH
Q 004623 168 IHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (741)
Q Consensus 168 IHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 246 (741)
- |++..+.+|+++ ++ =||--+-+ ++.++...|+++|.++ |.+ |-.-
T Consensus 215 T-~~~~v~eaAL~aGAd--iINsVs~~-------------------------~~d~~~~l~a~~g~~v-Vlm-~~~~--- 261 (499)
T TIGR00284 215 T-PTLDELYEALKAGAS--GVIMPDVE-------------------------NAVELASEKKLPEDAF-VVV-PGNQ--- 261 (499)
T ss_pred C-CCHHHHHHHHHcCCC--EEEECCcc-------------------------chhHHHHHHHHcCCeE-EEE-cCCC---
Confidence 7 578999999987 44 26622211 2345778899999998 554 2110
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEe----cCChhHHHHHHHHHHHHhhcCCCCccccccccccCCC--C
Q 004623 247 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK----ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEG--E 320 (741)
Q Consensus 247 il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K----aSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~--~ 320 (741)
+.-.++..+.++.|++.|+.+|++--= .......+++|+.+.++ +++|+=+|+..-... .
T Consensus 262 ---------~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~l~~sL~~l~~~r~~-----~~~Pil~GvSNvtel~da 327 (499)
T TIGR00284 262 ---------PTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLGLLESIIRFRRASRL-----LNVPLVFGAANVTELVDA 327 (499)
T ss_pred ---------CchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHHHHHHHHHHHHHHHh-----cCCcEEEeeccccCCCcc
Confidence 111278888999999999988776321 22345567788888777 679999998533221 1
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEec----CCCCcccchHHHHHHHhhhh
Q 004623 321 DGRMKSAIGIGTLLQDGLGDTIRVSL----TEPPEKEIDPCRRLANLGMR 366 (741)
Q Consensus 321 ~G~IKSaiGIG~LL~~GIGDTIRVSL----T~dP~~EV~v~~~il~~~~~ 366 (741)
+-.--+++-.+.....|+ +-|||.= |--.+.|...|.++.....+
T Consensus 328 Ds~g~naal~~~a~e~Ga-~ilrvhd~S~k~r~sV~E~~~A~~m~~~~~~ 376 (499)
T TIGR00284 328 DSHGVNALLAAIALEAGA-SILYVVEDSYKSYRSTAEAAEAAKMASAARK 376 (499)
T ss_pred chhHHHHHHHHHHHHcCC-CEEEEcCCcccccccHHHHHHHHHHHHHHHh
Confidence 111123443344455565 6777643 11247788888777665443
No 18
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=97.49 E-value=0.00062 Score=78.14 Aligned_cols=121 Identities=23% Similarity=0.367 Sum_probs=86.1
Q ss_pred CCeEEeeCC------CCChhhhhHHHHHHHHHhhcccC------cceeecCCC---CccccccHHHH----HHHHHHHhc
Q 004623 607 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNT------KTEYVSCPS---CGRTLFDLQEI----SAEIREKTS 667 (741)
Q Consensus 607 GDtIrvsl~------~~~~~ei~~~~~~ILQa~rlR~~------kte~ISCPs---CGRTlfDLq~~----~~~Ik~~t~ 667 (741)
|..||++.. +.+.+.+ .-....|+..++... -...+|||+ |+-.+.|-+.. +.++++.+.
T Consensus 385 g~~irlT~~Qnl~l~~i~~~~~-~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~ 463 (569)
T PRK13504 385 KGDFRLTANQNLIIANVPPSDK-AKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLA 463 (569)
T ss_pred CCEEEEeCCCCEEEcCCCHHHH-HHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHh
Confidence 346887754 2334433 223567888888532 235699986 98888887764 455555543
Q ss_pred C--C-C-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeeccee--------eeecCChhHHHHHHHHHHH
Q 004623 668 H--L-P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTV--------VKRGIAMEQATDALIQLIK 729 (741)
Q Consensus 668 h--L-k-gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~--------V~r~Ipeeeavd~Li~lIk 729 (741)
. + | +++|.|-||. ||=|...-||+|++|..++.+.+|.|+.. +...||.+++.+.+..+++
T Consensus 464 ~~~l~~~~i~I~vSGCp-n~Ca~~~iaDIG~vG~~~~~y~i~lGG~~~~~~~~~~~~~~v~~~~v~~~l~~ll~ 536 (569)
T PRK13504 464 KHGLSDEHIVIRMTGCP-NGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEILATLDPLLG 536 (569)
T ss_pred hcCCCCCceEEEEeCCc-ccccccccCcEEEEecCCCeEEEEECCCCCCCccchHhhcCCCHHHHHHHHHHHHH
Confidence 3 4 4 7899999996 88889999999999988889999999854 2246999997776655554
No 19
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=97.42 E-value=0.009 Score=62.57 Aligned_cols=202 Identities=18% Similarity=0.293 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CC------HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITV----QG------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvav----p~------~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vd 183 (741)
.|.++.+++++++.++||+++=|-. |+ .++.+.+..+.+.+++ .+++||..|-+ ++..+.+|++. ++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~-~~~~plsiDT~-~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRD-QPDVPISVDTY-RAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEeCC-CHHHHHHHHHcCCC
Confidence 5789999999999999999999942 32 2355556666665553 24799999986 57888888886 33
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHH--HhhcCCCchHHHHH
Q 004623 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVES 261 (741)
Q Consensus 184 kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~i--l~~yg~t~~amVeS 261 (741)
=||-.+... . .++.+.++++|.++=+--+.| .++.. +..|.+..+.+.+.
T Consensus 98 --iINsis~~~-~------------------------~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~ 149 (257)
T TIGR01496 98 --IINDVSGGQ-D------------------------PAMLEVAAEYGVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRF 149 (257)
T ss_pred --EEEECCCCC-C------------------------chhHHHHHHcCCcEEEEeCCC-CCcccccCCCcccHHHHHHHH
Confidence 277776642 1 235667889999985533334 43331 12354556788999
Q ss_pred HHHHHHHHHHCCC--CceEEEE-----ecC-ChhHHHHHHHHHHHHhhcCCCCccccccc---------cccCCCCCCch
Q 004623 262 AFEFARICRKLDF--HNFLFSM-----KAS-NPVVMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGRM 324 (741)
Q Consensus 262 Ale~~~i~e~~~F--~diviS~-----KaS-nv~~~i~Ayrlla~~m~~~g~dyPLHLGV---------TEAG~~~~G~I 324 (741)
+.+.++.|++.|+ +||+|.- |+. .-..++++++.|.+ ..+|+-+|+ ||- ...-+.
T Consensus 150 ~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~------~~~p~l~G~SrkSfig~v~~~--~~~~r~ 221 (257)
T TIGR01496 150 LEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVA------LGYPLLVGASRKSFIGALLGT--PPEERL 221 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHh------CCCcEEEEecccHHHHhhcCC--Chhhhh
Confidence 9999999999999 6887752 321 12345667766654 369999998 553 233455
Q ss_pred hhHHHHHH-HhhcCCCceeEEecCCCCcccchHHHHHHH
Q 004623 325 KSAIGIGT-LLQDGLGDTIRVSLTEPPEKEIDPCRRLAN 362 (741)
Q Consensus 325 KSaiGIG~-LL~~GIGDTIRVSLT~dP~~EV~v~~~il~ 362 (741)
-.++++.. ....|. |-||| ++|+-+++.++
T Consensus 222 ~~t~~~~~~a~~~Ga-~iiR~-------Hdv~~~~~~~~ 252 (257)
T TIGR01496 222 EGTLAASAYAVQKGA-DIVRV-------HDVKETRDALK 252 (257)
T ss_pred HHHHHHHHHHHHcCC-CEEEe-------CCHHHHHHHHH
Confidence 55555544 555565 78885 45666655544
No 20
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.39 E-value=0.0041 Score=74.80 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=86.0
Q ss_pred eeCCCCChhhhhHHHHHHHHHhhcccCc------ceeecCCC---CccccccHHHHHHHHHHHhcC--CC-CcEEEEeee
Q 004623 612 LEAPGQDFDFLRDTSFNLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQEISAEIREKTSH--LP-GVSIAIMGC 679 (741)
Q Consensus 612 vsl~~~~~~ei~~~~~~ILQa~rlR~~k------te~ISCPs---CGRTlfDLq~~~~~Ik~~t~h--Lk-gvkIAVMGC 679 (741)
|.+.+.+.+.+..+ +.=|+.+|+.... ...+|||+ |..-+.|-+.++.+++++... +| .+||+|-||
T Consensus 603 i~L~~i~~~~l~~v-~~~L~~~Gl~~~~~~g~~vr~v~aC~G~~~C~~g~~dt~~la~~l~~~~~~~~~P~k~ki~vSGC 681 (847)
T PRK14989 603 IGLFGAQKDDLPEI-WRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGC 681 (847)
T ss_pred eEeCCCCHHHHHHH-HHHHHHCCCCcCCCCCCCcCceeeCCCCCccccccccHHHHHHHHHHHhccCCCCCceEEEEeCC
Confidence 44555555555333 3334555665543 25899997 777788888899999999754 46 789999999
Q ss_pred eecCCCCCCCCceeeecCCCceeEeeecc---------eeeeecCChhHHHHH---HHHHHHhccc
Q 004623 680 IVNGPGEMADADFGYVGGAPGKIDLYVGK---------TVVKRGIAMEQATDA---LIQLIKDHGR 733 (741)
Q Consensus 680 IVNGPGEmaDAD~GyvGg~pGki~LY~gk---------e~V~r~Ipeeeavd~---Li~lIk~~g~ 733 (741)
. |.=++..-+|+|++|. .....+|.|+ ..+.+.+|++++.+- +++.-+++++
T Consensus 682 ~-~~C~~~~i~DiG~i~~-~~G~~v~vGG~~G~~~~~g~~l~~~~~~~~v~~~i~~~l~~y~~~~~ 745 (847)
T PRK14989 682 T-RECAEAQGKDVGIIAT-EKGWNLYVCGNGGMKPRHADLLAADLDRETLIKYLDRFMMFYIRTAD 745 (847)
T ss_pred c-ccccccccccEEEEEe-cCceEEEECCCCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 5 8889999999999996 4558999987 235557999988775 4454556664
No 21
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=97.36 E-value=0.021 Score=59.40 Aligned_cols=207 Identities=21% Similarity=0.263 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~----------~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdk 184 (741)
.|.++.++++.++.++||+||=|-..+ .++.+.+..+.+.|++ .+++||.-|- |++..+.+|++....
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~-~~~~piSIDT-~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAG-EPDVPISVDT-FNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHh-cCCCeEEEeC-CcHHHHHHHHHhCCC
Confidence 589999999999999999999886433 3556666666666653 3479998886 789999999987422
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCc-HHHHhhcCCCchHHHHHHH
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~-~~il~~yg~t~~amVeSAl 263 (741)
+ ||-=+-...+ .++++.++++|.|+=+-.+.|.=. ..-...|.++.+.+.+.+.
T Consensus 99 i-INdis~~~~~------------------------~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T cd00423 99 I-INDVSGGRGD------------------------PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLE 153 (258)
T ss_pred E-EEeCCCCCCC------------------------hHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHH
Confidence 2 6654332211 347788999999985555444210 0112346677899999999
Q ss_pred HHHHHHHHCCC--CceEE-----EEecCChhHHHHHHHHHHHHhhcCCCCcccccccc---ccCCC----CCCch-hhHH
Q 004623 264 EFARICRKLDF--HNFLF-----SMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT---EAGEG----EDGRM-KSAI 328 (741)
Q Consensus 264 e~~~i~e~~~F--~divi-----S~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVT---EAG~~----~~G~I-KSai 328 (741)
+.++.|.+.|+ ++|++ -.| +...-....+.+..- .+. ..||+-+|+. +-+.. ...|. -+++
T Consensus 154 ~~i~~~~~~Gi~~~~IilDPg~g~~k--~~~~~~~~l~~i~~~-~~~-~g~Pil~G~Snksf~~~~~~~~~~~R~~~t~a 229 (258)
T cd00423 154 ERVEAATEAGIPPEDIILDPGIGFGK--TEEHNLELLRRLDAF-REL-PGLPLLLGVSRKSFLGDLLSVGPKDRLAGTAA 229 (258)
T ss_pred HHHHHHHHcCCCHHHEEEeCCCCccC--CHHHHHHHHHHHHHH-Hhc-CCCcEEEEeccchhhcccCCCChHHhhHHHHH
Confidence 99999999995 68887 345 333333444444322 111 3799999964 33321 12232 2555
Q ss_pred HHHHHhhcCCCceeEEecCCCCcccchHH
Q 004623 329 GIGTLLQDGLGDTIRVSLTEPPEKEIDPC 357 (741)
Q Consensus 329 GIG~LL~~GIGDTIRVSLT~dP~~EV~v~ 357 (741)
........| -|-+||- |+.|..-+
T Consensus 230 ~~~~a~~~G-~~~~rvh----~v~~~~~a 253 (258)
T cd00423 230 FLAAAILNG-ADIVRVH----DVKELRDA 253 (258)
T ss_pred HHHHHHHcC-CCEEEEC----CCHHHHHH
Confidence 566677778 6777763 35554443
No 22
>PLN00178 sulfite reductase
Probab=97.35 E-value=0.0013 Score=76.58 Aligned_cols=121 Identities=18% Similarity=0.320 Sum_probs=82.4
Q ss_pred CCeEEeeCC------CCChhhhhHHHHHHHHHhhcccCcc------eeecCC---CCccccccHHHHHHHH----HHHhc
Q 004623 607 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTKT------EYVSCP---SCGRTLFDLQEISAEI----REKTS 667 (741)
Q Consensus 607 GDtIrvsl~------~~~~~ei~~~~~~ILQa~rlR~~kt------e~ISCP---sCGRTlfDLq~~~~~I----k~~t~ 667 (741)
|..||++.. +.+.+.+ .-...+|+..++..... ..++|| +|+-.+.|-+..+..+ ++.+.
T Consensus 433 g~~iRlT~~Qnlil~~I~~~~~-~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~~~ 511 (623)
T PLN00178 433 NLPVRLTPNQNLILCDIRPAWK-EPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAMFN 511 (623)
T ss_pred CCcEEEeCCCCEEEcCCCHHHH-HHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 346777643 3333332 22356788888864321 346896 5998888776655444 44332
Q ss_pred --CC--C-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecce--------eeeecCChhHHHHHHHHHHH
Q 004623 668 --HL--P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT--------VVKRGIAMEQATDALIQLIK 729 (741)
Q Consensus 668 --hL--k-gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke--------~V~r~Ipeeeavd~Li~lIk 729 (741)
.+ + .++|.|-||. ||=|.-.-||+|++|.+++++++|.|+. .+.++||++++.+.|..+++
T Consensus 512 ~~~l~~~~~i~I~vSGCp-NgCarp~iaDIGlvG~~~~~Y~I~lGG~~~~~~la~~~~~~V~~eei~~~le~ll~ 585 (623)
T PLN00178 512 KVGLKYDESVVVRMTGCP-NGCARPYMAELGFVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFY 585 (623)
T ss_pred hcCCCCCCceEEEEeCCC-ccccccccCcEEEEcCCCCeEEEEECCCCCcccccchhhcCcCHHHHHHHHHHHHH
Confidence 23 2 5899999995 8889999999999998888999999873 23357999997776655553
No 23
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=97.24 E-value=0.0023 Score=73.90 Aligned_cols=121 Identities=20% Similarity=0.340 Sum_probs=85.3
Q ss_pred CCeEEeeCC------CCChhhhhHHHHHHHHHhhcccCc------ceeecCCC---CccccccHHH----HHHHHHHHhc
Q 004623 607 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQE----ISAEIREKTS 667 (741)
Q Consensus 607 GDtIrvsl~------~~~~~ei~~~~~~ILQa~rlR~~k------te~ISCPs---CGRTlfDLq~----~~~~Ik~~t~ 667 (741)
|.++|++.. ..+.+.+ +-...+|+..++.... -..++||+ |+..+.|-+. +++++++.+.
T Consensus 395 g~~irlT~~Qnl~l~~V~~~~~-~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~~ 473 (577)
T TIGR02042 395 NLPVRLTPNQNIILYDIQPEWK-RAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLE 473 (577)
T ss_pred CCCEEEcCCCCeEECCCCHHHH-HHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 446887643 3344433 2235678888875421 13689997 9988777663 5566666553
Q ss_pred --CCC--CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeeccee--------eeecCChhHHHHHHHHHHH
Q 004623 668 --HLP--GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTV--------VKRGIAMEQATDALIQLIK 729 (741)
Q Consensus 668 --hLk--gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~--------V~r~Ipeeeavd~Li~lIk 729 (741)
.++ ++||+|-||. ||=|.-.-||+|++|..+++++||.|+.. +.+.||++++.+.|..+++
T Consensus 474 ~~~l~~~~i~I~vSGCp-n~Ca~p~iaDIG~vG~~~~~y~l~lGG~~~~~rla~~~~~~vp~~ei~~vl~~ll~ 546 (577)
T TIGR02042 474 KVGLPDEHFVVRMTGCP-NGCARPYMAELGFVGSAPNSYQVWLGGSPNQTRLARPFIDKLKDGDLEKVLEPLFV 546 (577)
T ss_pred hcCCCCCCcEEEEECCC-ccccCCCcCcEEEECCCCCcEEEEECCCCCcccchhHHhcCcCHHHHHHHHHHHHH
Confidence 343 6999999995 88899999999999988888999998743 2246999998887655554
No 24
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=97.17 E-value=0.0024 Score=70.06 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=77.1
Q ss_pred HHHHHHhhccc------CcceeecCCCCc---cccccHHHHHHHHHHHhc------CCC-CcEEEEeeeeecCCCCCCCC
Q 004623 627 FNLLQGCRMRN------TKTEYVSCPSCG---RTLFDLQEISAEIREKTS------HLP-GVSIAIMGCIVNGPGEMADA 690 (741)
Q Consensus 627 ~~ILQa~rlR~------~kte~ISCPsCG---RTlfDLq~~~~~Ik~~t~------hLk-gvkIAVMGCIVNGPGEmaDA 690 (741)
+..|+..++-. +-.+.++||.|| .-++|...++.++.+.+. .|| .+||+|-||- |+-+..--+
T Consensus 70 ~~~l~~~GL~~~~~~g~~~Rnv~~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~LPrKfki~vsgc~-~~c~~~~~~ 148 (390)
T TIGR02435 70 SQALLAAGLGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALENERALLELPPKFSVAIDGGG-RLVLLGDTA 148 (390)
T ss_pred HHHHHHCCCCCccccCCcccccccCccccCCCccccchHHHHHHHHHHHhcChhhhcCCCceEEEEECCC-ccccCCCCC
Confidence 44566556543 234799999998 447899999999998763 467 7899999997 888888999
Q ss_pred ceeeecCCCce---eEeeecc-----eeeeecCChhHHHHHHHHHHH---hccc
Q 004623 691 DFGYVGGAPGK---IDLYVGK-----TVVKRGIAMEQATDALIQLIK---DHGR 733 (741)
Q Consensus 691 D~GyvGg~pGk---i~LY~gk-----e~V~r~Ipeeeavd~Li~lIk---~~g~ 733 (741)
|+|+++...+. +.+|.|+ ..+. .||.+++++.+..+++ ++|.
T Consensus 149 DIG~~~~~~~~~~gf~v~vGG~~~~~~~~~-~v~~~~v~~~v~av~~~~~~~g~ 201 (390)
T TIGR02435 149 DVRLQALTTGAGVAWVVSLAGISTSARSLV-TVAPDAAVPVAVALLRVFVELGG 201 (390)
T ss_pred CEEEEEEecCCEEEEEEEEecCCCCCCceE-EeCHHHHHHHHHHHHHHHHHhCc
Confidence 99999864444 7888876 2233 3899998886655554 5553
No 25
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.05 E-value=0.0036 Score=74.40 Aligned_cols=117 Identities=18% Similarity=0.269 Sum_probs=82.0
Q ss_pred CCCCChhhhhHHHHHHHHHhhcc----cCcceeecCCC---CccccccHHHHHHHHHHHhcC--CC-CcEEEEeeeeecC
Q 004623 614 APGQDFDFLRDTSFNLLQGCRMR----NTKTEYVSCPS---CGRTLFDLQEISAEIREKTSH--LP-GVSIAIMGCIVNG 683 (741)
Q Consensus 614 l~~~~~~ei~~~~~~ILQa~rlR----~~kte~ISCPs---CGRTlfDLq~~~~~Ik~~t~h--Lk-gvkIAVMGCIVNG 683 (741)
+.+.+.+.+.. .+.-|+..++- .+--..+|||+ |..-.+|-+.++.+++++... +| .+||+|-||. |.
T Consensus 595 l~gi~~~~l~~-i~~~L~~~gl~~~~g~~~r~v~aC~G~~~C~~g~~ds~~la~~l~~~~~~~~~p~k~ki~vSGC~-~~ 672 (785)
T TIGR02374 595 LFGAKKDDLPN-IWKDLKMPGYEHAYGKALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEGLRTPHKIKIGVSGCE-RE 672 (785)
T ss_pred ECCCCHHHHHH-HHHHHHhCCCCCCCCCCccCcccCCCccccCcchhhHHHHHHHHHHHhcccCCCCceEEEEECCc-cc
Confidence 44455555533 24456666663 12236789985 666677888889999988864 45 7899999999 88
Q ss_pred CCCCCCCceeeecCCCceeEeeecce---------eeeecCChhHHHHHH---HHHHHhccc
Q 004623 684 PGEMADADFGYVGGAPGKIDLYVGKT---------VVKRGIAMEQATDAL---IQLIKDHGR 733 (741)
Q Consensus 684 PGEmaDAD~GyvGg~pGki~LY~gke---------~V~r~Ipeeeavd~L---i~lIk~~g~ 733 (741)
=++..-+|+|++|. ++..++|.|+. .+...+|+|++++-+ ++.-+++++
T Consensus 673 C~~~~~~DiG~i~~-~~g~~v~vGG~~g~~~~~a~~l~~~~~~e~v~~~i~~~l~~y~~~~~ 733 (785)
T TIGR02374 673 CAEAAGKDVGVIAT-EKGWNLYVGGNGGTHPRHGDLLAVDEDEETLIGYIDRFLQYYRETAD 733 (785)
T ss_pred cchhhhCcEEEEEe-cCCeEEEECCcCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 89999999999996 45689999873 344457888777654 444456654
No 26
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=97.00 E-value=0.017 Score=65.81 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=69.3
Q ss_pred eeecCCCCccc---cccHHHHHHHHHHHh----------cCCC-CcEEEEeeeeecCCCCCCCCceeeecC-CCc--eeE
Q 004623 641 EYVSCPSCGRT---LFDLQEISAEIREKT----------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGG-APG--KID 703 (741)
Q Consensus 641 e~ISCPsCGRT---lfDLq~~~~~Ik~~t----------~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg-~pG--ki~ 703 (741)
+.++||.||.. ++|.+.++.++.+.+ .+|| .+||+|-||. |.-+...-+|+|+++. ..| .+.
T Consensus 140 nv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~-~~c~~~~i~DiG~~~~~~~~~~gf~ 218 (513)
T PRK09566 140 NITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGR-DNSVHAEINDIAFVPAYKDGVLGFN 218 (513)
T ss_pred CccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEEECCC-CCcccccccceEEEEEEECCeeEEE
Confidence 68899998875 799999999999876 3688 7899999997 6668888899999985 222 477
Q ss_pred eeeccee----------eeecCChhHHHHHHH---HHHHhccc
Q 004623 704 LYVGKTV----------VKRGIAMEQATDALI---QLIKDHGR 733 (741)
Q Consensus 704 LY~gke~----------V~r~Ipeeeavd~Li---~lIk~~g~ 733 (741)
+|.|+.. +..-||++++++-+. +.-+++|.
T Consensus 219 v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~ 261 (513)
T PRK09566 219 VLVGGFFSSQRCAYAIPLNAWVKPDEVVRLCRAILEVYRDNGL 261 (513)
T ss_pred EEEecccCCCCCcCceeeeeecCHHHHHHHHHHHHHHHHHhCC
Confidence 8887642 122488888877544 44467763
No 27
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=96.97 E-value=0.08 Score=57.75 Aligned_cols=184 Identities=18% Similarity=0.264 Sum_probs=118.8
Q ss_pred CceeEEE-c----eeecCCCCce--E----------EEeccCCCCC------CHHHHHHHH--------HHHH-HcCCCE
Q 004623 87 KTRTVMV-G----NVAIGSEHPI--R----------VQTMTTNDTK------DVAGTVEEV--------MRIA-DQGADL 134 (741)
Q Consensus 87 ~Tr~V~V-G----~V~IGG~~PI--~----------VQSMt~t~T~------Dv~atv~Qi--------~~L~-~aGcei 134 (741)
+-|+|.+ | .|+|||+.-. - +=.|.=.|+. .+++-++.+ ++.. ++|+|+
T Consensus 13 ~I~eV~igG~g~~~v~iGGe~vlpf~r~e~~~~n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~ 92 (319)
T PRK04452 13 KIREVTLGGTGPKTVKLGGETALPFYHFEGPMPNPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADM 92 (319)
T ss_pred ceEEEEEeeecceeEEECCcccccccccCCCCCCCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCE
Confidence 4578888 5 3789996543 0 0122223332 255555554 3444 999999
Q ss_pred EEEec----CCH--HHHHHHHHHHHhhccCCcccceeeccCC----CHHHHHHHhhhcCcee--eCCCCCCchhhhcccc
Q 004623 135 VRITV----QGK--READACFEIKNSLVQKNYNIPLVADIHF----APSVALRVAECFDKIR--VNPGNFADRRAQFEQL 202 (741)
Q Consensus 135 VRvav----p~~--~~A~al~~I~~~L~~~~~~iPLVADIHF----~~~lAl~a~~~vdkiR--INPGNig~~~k~f~~~ 202 (741)
|-|-. |+. ++.+.+....+.+. ..+++||+-|.=+ |+....+|++.+..=| ||+=|.
T Consensus 93 Idl~~~s~dp~~~d~~~~e~~~~Vk~V~-eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~---------- 161 (319)
T PRK04452 93 ITLHLISTDPNGKDKSPEEAAKTVEEVL-QAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE---------- 161 (319)
T ss_pred EEEECCCCCcccccchHHHHHHHHHHHH-HhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH----------
Confidence 98874 431 12222333333321 2489999999998 7888888888765322 555442
Q ss_pred ccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CceEEE
Q 004623 203 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFS 280 (741)
Q Consensus 203 ~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS 280 (741)
++++++...||+||.++ .+ +.+.+ ++-|.+-.+.|.++|+ +||+|-
T Consensus 162 ---------------en~~~i~~lA~~y~~~V--va---~s~~D------------ln~ak~L~~~l~~~Gi~~edIviD 209 (319)
T PRK04452 162 ---------------DNYKKIAAAAMAYGHAV--IA---WSPLD------------INLAKQLNILLTELGVPRERIVMD 209 (319)
T ss_pred ---------------HHHHHHHHHHHHhCCeE--EE---EcHHH------------HHHHHHHHHHHHHcCCCHHHEEEe
Confidence 24788999999999987 33 11122 7788889999999999 999985
Q ss_pred EecC-------ChhHHHHHHHHHHHHhhcCCCCcccccccc
Q 004623 281 MKAS-------NPVVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (741)
Q Consensus 281 ~KaS-------nv~~~i~Ayrlla~~m~~~g~dyPLHLGVT 314 (741)
-=.. ....+++.-|++|=+ ..+-.-||.=-+++
T Consensus 210 P~~~~lg~g~e~~~~~~e~IR~aAl~-~d~~l~~P~i~~~~ 249 (319)
T PRK04452 210 PTTGALGYGIEYSYSVMERIRLAALK-GDEMLQMPMISGVG 249 (319)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhc-CCCcCCCCeEecch
Confidence 5443 334556777777765 55556799888888
No 28
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=96.94 E-value=0.0028 Score=60.46 Aligned_cols=88 Identities=25% Similarity=0.519 Sum_probs=61.8
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCCCCCceeeecCCC-c---eeEeee
Q 004623 641 EYVSCPS---CGRTLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAP-G---KIDLYV 706 (741)
Q Consensus 641 e~ISCPs---CGRTlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~p-G---ki~LY~ 706 (741)
+.++||+ |.--++|-..++.+|.+++ ..+| .+||+|-||. |+=+...-+|+|++|... + .+.+|.
T Consensus 7 nv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp~k~kI~isGCp-n~C~~~~i~DIG~~g~~~~~~~~g~~v~v 85 (157)
T PF01077_consen 7 NVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLPRKFKIAISGCP-NSCARPQINDIGFIGVKKPNGEEGFDVYV 85 (157)
T ss_dssp HEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSSS-BEEEEESST-TSTTSGGGSSEEEEEEEESTCEEEEEEEE
T ss_pred ccccCCChhhCchHHhCHHHHhhHhhhcccccccccccccccccceeecc-cccccccccccccceeeeccccceeeeee
Confidence 6789998 5577788888999999443 3566 7999999998 567778888999999622 2 689999
Q ss_pred ccee---------ee--ecCChhHHHHHHHHHHH
Q 004623 707 GKTV---------VK--RGIAMEQATDALIQLIK 729 (741)
Q Consensus 707 gke~---------V~--r~Ipeeeavd~Li~lIk 729 (741)
|+.. +. .-+|+|++++-+..+++
T Consensus 86 GG~~g~~~~~~~~~~~~~~~~~ee~~~~i~~il~ 119 (157)
T PF01077_consen 86 GGGLGRHPRLGRELALAGFVPEEEVLEVIEAILE 119 (157)
T ss_dssp S-BESTSTBEBEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred cccccCCCCccceeeccccccHHHHHHHHHHHHH
Confidence 7643 22 24788877665444443
No 29
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=96.94 E-value=0.039 Score=61.43 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=128.2
Q ss_pred CceeEEEc----------eeecCCCCceEE----------EeccCCCC--CC----HHHHHHHHH---------HHHHcC
Q 004623 87 KTRTVMVG----------NVAIGSEHPIRV----------QTMTTNDT--KD----VAGTVEEVM---------RIADQG 131 (741)
Q Consensus 87 ~Tr~V~VG----------~V~IGG~~PI~V----------QSMt~t~T--~D----v~atv~Qi~---------~L~~aG 131 (741)
+-|+|.+| .|.|||+.|.-- =.|.=+|+ .| +++-++.+. +....|
T Consensus 74 ~I~eV~iGat~~~G~~~kav~iGGEtvfyrhE~~~~npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~~V~~~~ 153 (389)
T TIGR00381 74 KIEEVVLGATKAEGTREKTVTLGGQRALYRFEEPQPNPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARKCVKEFG 153 (389)
T ss_pred eeEEEEEccccCCCCcceeEEECCcccceecCcCCCCCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 45789996 588999886431 12222344 34 555555555 336899
Q ss_pred CCEEEEe--cCCH--------HHHHHHHHHHHhhccCCcccceeec----cCCCHHHHHHHhhhcCc--eeeCCCCCCch
Q 004623 132 ADLVRIT--VQGK--------READACFEIKNSLVQKNYNIPLVAD----IHFAPSVALRVAECFDK--IRVNPGNFADR 195 (741)
Q Consensus 132 ceiVRva--vp~~--------~~A~al~~I~~~L~~~~~~iPLVAD----IHF~~~lAl~a~~~vdk--iRINPGNig~~ 195 (741)
+|+|.+- ..|. +.|+.++++.+ .+++|||=| --+|+.+..+|++.+.. .=||.=|..+
T Consensus 154 aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~-----av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~- 227 (389)
T TIGR00381 154 ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQ-----AVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL- 227 (389)
T ss_pred CCEEEEEecCCCccccccCHHHHHHHHHHHHH-----hCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh-
Confidence 9998765 3333 36677777766 489999988 35889999999998654 4477777632
Q ss_pred hhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCC
Q 004623 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH 275 (741)
Q Consensus 196 ~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~ 275 (741)
+|+++.+.||+||.|+ ++ .+..+ +..|-...+.|.++||.
T Consensus 228 -----------------------Ny~~ia~lAk~yg~~V--vv-~s~~D--------------in~ak~Ln~kL~~~Gv~ 267 (389)
T TIGR00381 228 -----------------------DYEKIANAAKKYGHVV--LS-WTIMD--------------INMQKTLNRYLLKRGLM 267 (389)
T ss_pred -----------------------hHHHHHHHHHHhCCeE--EE-EcCCc--------------HHHHHHHHHHHHHcCCC
Confidence 4788999999999988 44 22222 22333344457799998
Q ss_pred --ceEEEEec----CC---hhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchh
Q 004623 276 --NFLFSMKA----SN---PVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMK 325 (741)
Q Consensus 276 --diviS~Ka----Sn---v~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IK 325 (741)
|||+--=. .. ...++.+-|+.|=+ ..+-..||.--++|||-.-..-..+
T Consensus 268 ~eDIVlDP~t~alG~Gieya~s~~erIRraALk-gD~~L~~Pii~~~~~~w~~kEa~~~ 325 (389)
T TIGR00381 268 PRDIVMDPTTCALGYGIEFSITNMERIRLSGLK-GDTDLNMPMSSGTTNAWGAREAWMV 325 (389)
T ss_pred HHHEEEcCCCccccCCHHHHHHHHHHHHHHHhc-CCcCCCCCeeccchhhhhheeeccC
Confidence 99996644 22 34456666766653 4445679999999998776665554
No 30
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=96.91 E-value=0.045 Score=57.66 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCc-eeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~--~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdk-iRINPGN 191 (741)
.|.+..+++.+++.++||+|+=|-+.. .++.+.+..+.+.|++ .+++||.-|. +++..+.+|++++.. -=||-=|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~-~~~~plsIDT-~~~~v~eaaL~~~~G~~iINsIs 99 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQE-VVDVPLCIDS-PNPAAIEAGLKVAKGPPLINSVS 99 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHH-hCCCCEEEeC-CCHHHHHHHHHhCCCCCEEEeCC
Confidence 688999999999999999999987533 4567767777776654 3589999997 678999899987432 2255444
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeecc-CCCcHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH-GSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~-GSL~~~il~~yg~t~~amVeSAle~~~i~e 270 (741)
-.. +++.++++.++++|.++=+=.++ -..+ .|++..++.+.+.++.|+
T Consensus 100 ~~~-----------------------~~~~~~~~l~~~~g~~vv~m~~~~~g~P--------~t~~~~~~~l~~~v~~a~ 148 (261)
T PRK07535 100 AEG-----------------------EKLEVVLPLVKKYNAPVVALTMDDTGIP--------KDAEDRLAVAKELVEKAD 148 (261)
T ss_pred CCC-----------------------ccCHHHHHHHHHhCCCEEEEecCCCCCC--------CCHHHHHHHHHHHHHHHH
Confidence 321 12456788999999998443332 1121 245666888899999999
Q ss_pred HCCC--CceEEE-----E-ecC-ChhHHHHHHHHHHHHhhcCCC-CccccccccccCCCC
Q 004623 271 KLDF--HNFLFS-----M-KAS-NPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGE 320 (741)
Q Consensus 271 ~~~F--~diviS-----~-KaS-nv~~~i~Ayrlla~~m~~~g~-dyPLHLGVTEAG~~~ 320 (741)
+.|+ ++|+|- . |.. ....++++++.|.+. + .||+=+|+.=--.|.
T Consensus 149 ~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~-----~pg~p~l~G~Sn~Sfgl 203 (261)
T PRK07535 149 EYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKEL-----YPKVHTTCGLSNISFGL 203 (261)
T ss_pred HcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHh-----CCCCCEEEEeCCCccCC
Confidence 9999 688874 2 221 245679999999988 6 699999987655554
No 31
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=96.89 E-value=0.0031 Score=72.18 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=84.0
Q ss_pred CeEEeeCC------CCChhhhhHHHHHHHHHhhcccCc-----ceeecCCC---CccccccHHHHHHHHH----HHhcC-
Q 004623 608 DGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK-----TEYVSCPS---CGRTLFDLQEISAEIR----EKTSH- 668 (741)
Q Consensus 608 DtIrvsl~------~~~~~ei~~~~~~ILQa~rlR~~k-----te~ISCPs---CGRTlfDLq~~~~~Ik----~~t~h- 668 (741)
..||++.. +.+.+.+. -...+|+.+++.... ...+|||+ |...+.|-+..+.++. +.+..
T Consensus 370 ~~irlT~~Qnl~l~~v~~~~~~-~l~~~l~~~gl~~~~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~ 448 (541)
T TIGR02041 370 GDFRITPNQNLIIANVPEGGKA-KIEALARQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKH 448 (541)
T ss_pred CeEEEeCCCCEEEcCCCHHHHH-HHHHHHHHcCCCCCCCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777643 34444332 235678888875521 23689976 7888888777665444 44421
Q ss_pred --CC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecce--------eeeecCChhHHHHHHHHHHH
Q 004623 669 --LP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT--------VVKRGIAMEQATDALIQLIK 729 (741)
Q Consensus 669 --Lk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke--------~V~r~Ipeeeavd~Li~lIk 729 (741)
.| ++||.|-||. ||=|...-||+|++|..++.+.+|.|+. .+.++||++++.+.+..+++
T Consensus 449 ~~~~~~~~I~iSGCp-n~Ca~~~~adIG~~G~~~~~y~l~lGG~~~~~~~g~~~~~~v~~~~v~~~v~~ll~ 519 (541)
T TIGR02041 449 GLADEEIVLRMTGCP-NGCGRPYLAEIGLVGKAPGRYNLMLGGNRRGQRLPRLYRENITEPEILAELDELLG 519 (541)
T ss_pred CCCCCceEEEEecCC-ccccccccCcEEEEEeccceEEEEECCCCCCCchhHHHHcCCCHHHHHHHHHHHHH
Confidence 23 6899999995 8999999999999998788899999874 34557999999887765555
No 32
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0083 Score=68.73 Aligned_cols=121 Identities=22% Similarity=0.380 Sum_probs=89.2
Q ss_pred CeEEeeCCC------CChhhhhHHHHHHHHHhhccc----CcceeecCCC---CccccccHHH----HHHHHHHHhcCCC
Q 004623 608 DGLLLEAPG------QDFDFLRDTSFNLLQGCRMRN----TKTEYVSCPS---CGRTLFDLQE----ISAEIREKTSHLP 670 (741)
Q Consensus 608 DtIrvsl~~------~~~~ei~~~~~~ILQa~rlR~----~kte~ISCPs---CGRTlfDLq~----~~~~Ik~~t~hLk 670 (741)
+-||++... -+.++. .....+|+..++-. -..+.++||+ |+-.+-+=+. ++++.++.+....
T Consensus 336 ~eiRlT~~QnLii~~v~~~~~-~~i~~~l~~~Gl~t~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~ 414 (510)
T COG0155 336 GEIRLTPNQNLIIPNVPEAEL-EAILRILAALGLVTAPSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHG 414 (510)
T ss_pred ccEEeccCcceEecCCCHHHH-HHHHHHHHHcCCCCCCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccC
Confidence 567877542 233333 45678899988887 3457899965 9987777544 4555555544332
Q ss_pred -CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecc--------eeeeecCChhHHHHHHHHHHHh
Q 004623 671 -GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGK--------TVVKRGIAMEQATDALIQLIKD 730 (741)
Q Consensus 671 -gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gk--------e~V~r~Ipeeeavd~Li~lIk~ 730 (741)
+++|-+-||. ||=|--.-|++|++|..+|.+++|.|+ +..+.+++.+++.|.+-.++..
T Consensus 415 ~~i~i~isGCp-n~Ca~~~~a~Igl~G~~~~~y~v~lGG~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 482 (510)
T COG0155 415 LPITLHISGCP-NGCGRPHLAEIGLVGKAKGGYQVYLGGGADGTRGGKLYGENVPAEEILDAIDRLIGR 482 (510)
T ss_pred CceeEEeccCc-chhcCcccCceeEeeccCcceEEEecCCCCCCccceeecCCCCHHHHHHHHHHHHHH
Confidence 6899999996 999999999999999999999999986 5667789999977766666554
No 33
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=96.71 E-value=0.0064 Score=69.15 Aligned_cols=91 Identities=29% Similarity=0.522 Sum_probs=66.7
Q ss_pred ceeecCCC---CccccccHHHHHHHHHHHh---cCCC-CcEEEEeeeeecCCCCCCCCceeeecCC-------CceeEee
Q 004623 640 TEYVSCPS---CGRTLFDLQEISAEIREKT---SHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA-------PGKIDLY 705 (741)
Q Consensus 640 te~ISCPs---CGRTlfDLq~~~~~Ik~~t---~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~-------pGki~LY 705 (741)
...+|||+ |.-.+.|-+..+.++-+.+ .++| ++||.+-||. |+=|-..-||+|++|.. ...+++|
T Consensus 392 ~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~ 470 (513)
T PRK09566 392 RGLVSCTGNQYCNFALIETKNRALALAKELDAELDLPQPVRIHWTGCP-NSCGQPQVADIGLMGTKARKNGKTVEGVDIY 470 (513)
T ss_pred cCceeCcCcccccccHhhHHHHHHHHHHHHHHhcCCCCceEEEEECCh-hhhhchhhCCEEEEEEEeecCCcccceEEEE
Confidence 36889985 7777777666555554444 3566 7999999996 66677789999999962 1358899
Q ss_pred ecce---------eeeecCChhHHHHHHHHHHHhc
Q 004623 706 VGKT---------VVKRGIAMEQATDALIQLIKDH 731 (741)
Q Consensus 706 ~gke---------~V~r~Ipeeeavd~Li~lIk~~ 731 (741)
.|+. .+...||.+|+.+.+..++.++
T Consensus 471 lGG~~g~~~~~g~~~~~~v~~~ev~~~i~~l~~~~ 505 (513)
T PRK09566 471 MGGKVGKDAKLGECVQKGIPCEDLKPVLKDLLIEQ 505 (513)
T ss_pred eCCccCccccccchhhcCcCHHHHHHHHHHHHHHH
Confidence 9863 3556799999999888866643
No 34
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=96.53 E-value=0.013 Score=67.98 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=74.2
Q ss_pred HHHHHHhhcccCc----ceeecCC---CCccccccHHHHHHHHHHHhc---CCC-CcEEEEeeeeecCCCCCCCCceeee
Q 004623 627 FNLLQGCRMRNTK----TEYVSCP---SCGRTLFDLQEISAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYV 695 (741)
Q Consensus 627 ~~ILQa~rlR~~k----te~ISCP---sCGRTlfDLq~~~~~Ik~~t~---hLk-gvkIAVMGCIVNGPGEmaDAD~Gyv 695 (741)
...|+..++-... ...++|| +|+--++|-+..+.++.+++. .|+ ++||.+-|| -||=|-..-||+|++
T Consensus 428 ~~~L~~~Gl~~~~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~l~~~ikI~vSGC-pn~Ca~~~iaDIGfv 506 (593)
T PRK09567 428 EAAIEALGLTTEASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPRVALDQPVNIHLTGC-HHSCAQHYIGDIGLI 506 (593)
T ss_pred HHHHHHcCCCCCCcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHhcCCCCCcEEEEECC-CccccccccCCEEEE
Confidence 4456666664322 2468997 698888888776666655443 466 899999999 498899999999999
Q ss_pred cCC--------CceeEeeeccee---------eeecCChhHHHHHHHHHHH
Q 004623 696 GGA--------PGKIDLYVGKTV---------VKRGIAMEQATDALIQLIK 729 (741)
Q Consensus 696 Gg~--------pGki~LY~gke~---------V~r~Ipeeeavd~Li~lIk 729 (741)
|.. .+++++|.|+.. +...||.+++.+.+..+++
T Consensus 507 G~~~~~~~g~~~~gy~v~lGG~~g~~~~lg~~~~~~vp~eev~~~l~~ll~ 557 (593)
T PRK09567 507 GAKVAVSEGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAEDAPRLVERLLR 557 (593)
T ss_pred eeEeccCCCCccceEEEEECCCCCCCCCcchHhhcCCCHHHHHHHHHHHHH
Confidence 952 357899998742 2346999998876666654
No 35
>PLN02431 ferredoxin--nitrite reductase
Probab=96.36 E-value=0.023 Score=66.10 Aligned_cols=89 Identities=24% Similarity=0.572 Sum_probs=66.0
Q ss_pred ceeecCCC---CccccccHHHHHHHHHHHhc---CCC-CcEEEEeeeeecCCCCCCCCceeeecCC----Cc----eeEe
Q 004623 640 TEYVSCPS---CGRTLFDLQEISAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA----PG----KIDL 704 (741)
Q Consensus 640 te~ISCPs---CGRTlfDLq~~~~~Ik~~t~---hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~----pG----ki~L 704 (741)
.+.++||+ |+..+.|-...+.++.+.+. ++| ++||+|-||. |+=|-..-||+|++|.. .| .+++
T Consensus 466 r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~~~~lp~k~kI~vSGCp-n~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V 544 (587)
T PLN02431 466 KGLVACTGNQFCGQAIIETKARALKVTEELERLVEVPRPVRMHWTGCP-NSCGQVQVADIGFMGCMARDENGKAVEGADI 544 (587)
T ss_pred cceeECCCccccCccHHHHHHHHHHHHHHHHHhhcCCCCeEEEEECCc-ccccccccccEEEEeeeeecCCCccceEEEE
Confidence 36899965 88888886666666655542 466 7999999996 66688889999999841 12 4788
Q ss_pred eecce---------eeeecCChhHHHHHHHHHHH
Q 004623 705 YVGKT---------VVKRGIAMEQATDALIQLIK 729 (741)
Q Consensus 705 Y~gke---------~V~r~Ipeeeavd~Li~lIk 729 (741)
|.|+. .+.+.||.+|+.+-+.+++.
T Consensus 545 ~lGG~~G~~~~~g~~l~~~Vp~eel~~~v~~il~ 578 (587)
T PLN02431 545 FVGGRVGSDSHLAEEYKKGVPCDELVPVVADILI 578 (587)
T ss_pred EECCcCCCCCccchhhhcCCCHHHHHHHHHHHHH
Confidence 88753 35557999999998888444
No 36
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.07 E-value=0.25 Score=54.61 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=119.0
Q ss_pred CCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec------------CCHHHHHHHHHHHH
Q 004623 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV------------QGKREADACFEIKN 153 (741)
Q Consensus 86 r~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav------------p~~~~A~al~~I~~ 153 (741)
..+..|.+|++.|||++|..|- --..-.+-+..++...+|.++|..++|-.. ++.+.-+.|.+.++
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~ia--Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~ 179 (360)
T PRK12595 102 PEDTIVDVKGEVIGDGNQSFIF--GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVAD 179 (360)
T ss_pred CCCCEEEECCEEecCCCeeeEE--ecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHH
Confidence 3467799999999999998875 222234567788888889999999999652 34456666767666
Q ss_pred hhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCe
Q 004623 154 SLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 233 (741)
Q Consensus 154 ~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 233 (741)
+ ..+|+++++|--..+. .+.+.+|-+-|--+|+-+ .++++.+-+.|+|
T Consensus 180 ~-----~Gl~~~t~v~d~~~~~-~l~~~vd~lkI~s~~~~n--------------------------~~LL~~~a~~gkP 227 (360)
T PRK12595 180 E-----YGLAVISEIVNPADVE-VALDYVDVIQIGARNMQN--------------------------FELLKAAGRVNKP 227 (360)
T ss_pred H-----cCCCEEEeeCCHHHHH-HHHHhCCeEEECcccccC--------------------------HHHHHHHHccCCc
Confidence 4 7899999998755444 445669999999999965 3588888899999
Q ss_pred EEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEE--EecC-----ChhHHHHHHHHHHHHhhcCCCC
Q 004623 234 VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS--MKAS-----NPVVMVQAYRLLVAEMYVHGWD 306 (741)
Q Consensus 234 IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS--~KaS-----nv~~~i~Ayrlla~~m~~~g~d 306 (741)
|=+-..-. .+++ -++.|.+++ .+.|-++|++- +=++ .-..-..+-..|.++ ++
T Consensus 228 Vilk~G~~-----------~t~~-e~~~Ave~i---~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~-----~~ 287 (360)
T PRK12595 228 VLLKRGLS-----------ATIE-EFIYAAEYI---MSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQE-----TH 287 (360)
T ss_pred EEEeCCCC-----------CCHH-HHHHHHHHH---HHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH-----hC
Confidence 94433211 1332 334455544 56777777765 2121 111235666667766 67
Q ss_pred ccccccccccC
Q 004623 307 YPLHLGVTEAG 317 (741)
Q Consensus 307 yPLHLGVTEAG 317 (741)
+|.=++.|-++
T Consensus 288 ~PV~~d~~Hs~ 298 (360)
T PRK12595 288 LPVMVDVTHST 298 (360)
T ss_pred CCEEEeCCCCC
Confidence 78544446664
No 37
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.07 E-value=0.46 Score=51.08 Aligned_cols=207 Identities=16% Similarity=0.265 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCH------HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITV----QGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvav----p~~------~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vd 183 (741)
.|.++.++++.++.+.||+|+=|-. |+. ++.+-+..+.+.|++ ..++||.-|. |++..|.+|+++ ++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~-~~~~~ISIDT-~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQ-RFEVWISVDT-SKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEC-CCHHHHHHHHHcCCC
Confidence 5899999999999999999999873 332 233333333344443 2479999996 779999999987 55
Q ss_pred ceeeCCC-CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHH--hhcCCCchHHHH
Q 004623 184 KIRVNPG-NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM--SYYGDSPRGMVE 260 (741)
Q Consensus 184 kiRINPG-Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il--~~yg~t~~amVe 260 (741)
= ||== .+.+ .++.+.|+++|.++=+--+.| .++.+- ..|.+--+.+..
T Consensus 113 i--INDI~g~~d--------------------------~~~~~~~a~~~~~vVlmh~~g-~p~~~~~~~~y~dv~~~v~~ 163 (282)
T PRK11613 113 I--INDIRSLSE--------------------------PGALEAAAETGLPVCLMHMQG-NPKTMQEAPKYDDVFAEVNR 163 (282)
T ss_pred E--EEECCCCCC--------------------------HHHHHHHHHcCCCEEEEcCCC-CCCccccCCCcccHHHHHHH
Confidence 3 3311 1111 124455788999986654444 333321 224444456677
Q ss_pred HHHHHHHHHHHCCCC--ceEEEEe---cCChhHHHHHHHHHHHHhhc-CCCCcccccccc------c-cCCCCCCchhhH
Q 004623 261 SAFEFARICRKLDFH--NFLFSMK---ASNPVVMVQAYRLLVAEMYV-HGWDYPLHLGVT------E-AGEGEDGRMKSA 327 (741)
Q Consensus 261 SAle~~~i~e~~~F~--diviS~K---aSnv~~~i~Ayrlla~~m~~-~g~dyPLHLGVT------E-AG~~~~G~IKSa 327 (741)
...+.++.|++.|+. +|++--= +.+.. +.+++|..- .. ....||+=+|+. + .|....-|+-.+
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~---~n~~ll~~l-~~l~~lg~Pilvg~SRKsfig~~~~~~~~~r~~~T 239 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFGFGKNLS---HNYQLLARL-AEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGS 239 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCcCCCHH---HHHHHHHHH-HHHHhCCCCEEEEecccHHHHhhcCCChhhhhHHH
Confidence 888889999999996 8886421 11222 334443321 11 125799999965 1 122344566666
Q ss_pred HHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHh
Q 004623 328 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANL 363 (741)
Q Consensus 328 iGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~ 363 (741)
++...++...=.|-||| +.|..+++.++.
T Consensus 240 ~a~~~~a~~~ga~iiRv-------HdV~~~~~a~~~ 268 (282)
T PRK11613 240 LACAVIAAMQGAQIIRV-------HDVKETVEAMRV 268 (282)
T ss_pred HHHHHHHHHCCCCEEEc-------CCHHHHHHHHHH
Confidence 66655444433478885 556666555543
No 38
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.05 E-value=0.68 Score=49.25 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=102.0
Q ss_pred CCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------CHH--HHHHHHHHHHhhc
Q 004623 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-------GKR--EADACFEIKNSLV 156 (741)
Q Consensus 86 r~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp-------~~~--~A~al~~I~~~L~ 156 (741)
.+...|.+|++.||++..+.|-=.+.- .|.+++.+-.++|.++|..++|...- +.+ -.+.++.+++..+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~ 88 (266)
T PRK13398 11 GEKTIVKVGDVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD 88 (266)
T ss_pred CCCcEEEECCEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH
Confidence 345679999999999966677665554 47889999999999999999999832 111 2344444444333
Q ss_pred cCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 157 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 157 ~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
...+|+++++|-...+- .+.+.++-+-|--+|+-+ .++++.+-..|+||
T Consensus 89 --~~Gl~~~te~~d~~~~~-~l~~~vd~~kIga~~~~n--------------------------~~LL~~~a~~gkPV-- 137 (266)
T PRK13398 89 --KYNLPVVTEVMDTRDVE-EVADYADMLQIGSRNMQN--------------------------FELLKEVGKTKKPI-- 137 (266)
T ss_pred --HcCCCEEEeeCChhhHH-HHHHhCCEEEECcccccC--------------------------HHHHHHHhcCCCcE--
Confidence 36799999998754444 444668889998888855 34778888899998
Q ss_pred eeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE
Q 004623 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 237 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 281 (741)
++-.|-- .+.+.+..+ ++.++..|=+++.+-.
T Consensus 138 ~lk~G~~---------~s~~e~~~A----~e~i~~~Gn~~i~L~~ 169 (266)
T PRK13398 138 LLKRGMS---------ATLEEWLYA----AEYIMSEGNENVVLCE 169 (266)
T ss_pred EEeCCCC---------CCHHHHHHH----HHHHHhcCCCeEEEEE
Confidence 4433310 133333333 3556788888887743
No 39
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=95.87 E-value=0.051 Score=62.77 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=67.5
Q ss_pred eeecCC--CCccccccHHHHHHHHHHHhc-------------------------------CCC-CcEEEEeeeeecCCCC
Q 004623 641 EYVSCP--SCGRTLFDLQEISAEIREKTS-------------------------------HLP-GVSIAIMGCIVNGPGE 686 (741)
Q Consensus 641 e~ISCP--sCGRTlfDLq~~~~~Ik~~t~-------------------------------hLk-gvkIAVMGCIVNGPGE 686 (741)
+.++|| .|+..++|.+.++.+|...+. .|| -.||||-||. |.-+.
T Consensus 149 NV~~~p~~~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKiavsgc~-~~c~~ 227 (569)
T PRK13504 149 NVMCTPNPYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATFSGTEEEPIYGKTYLPRKFKIAVAVPP-DNDVD 227 (569)
T ss_pred ceecCCCcccccchHHHHHHHHHHHHHhccccchhHHhhhcCcccccccccccCcccccCCCCCceEEEEEcCC-ccccC
Confidence 578998 788889999999999987542 477 7899999998 55678
Q ss_pred CCCCceeeecCC-Cc---eeEeeecce----------------eeeecCChhHHHHHHHHHH---Hhcc
Q 004623 687 MADADFGYVGGA-PG---KIDLYVGKT----------------VVKRGIAMEQATDALIQLI---KDHG 732 (741)
Q Consensus 687 maDAD~GyvGg~-pG---ki~LY~gke----------------~V~r~Ipeeeavd~Li~lI---k~~g 732 (741)
.--+|+|+++.. .| ..++|.|+. .+. -||++++++-+..++ +++|
T Consensus 228 ~~~~DiG~~~~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~G 295 (569)
T PRK13504 228 VYANDLGFVAIAENGKLVGFNVLVGGGMGMTHGDKETYPRLADELG-YVPPEDVLDVAEAVVTTQRDYG 295 (569)
T ss_pred ceecceEEEEEecCCcEEEEEEEEEccccCCCCCCCCCCccccccC-ccCHHHHHHHHHHHHHHHHHhC
Confidence 888999999852 33 367888873 223 489998887554444 4665
No 40
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=95.71 E-value=0.48 Score=59.55 Aligned_cols=211 Identities=19% Similarity=0.228 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccC--CcccceeeccCCCHHHHHHHhhhc-CceeeCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQK--NYNIPLVADIHFAPSVALRVAECF-DKIRVNP 189 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~--~~~A~al~~I~~~L~~~--~~~iPLVADIHF~~~lAl~a~~~v-dkiRINP 189 (741)
.|.+..+++.+++.++||+|+=|-+-. ..+.+.+.++...|.+. -+++||.-|- +++..+.+|++.+ .+==||=
T Consensus 365 ~d~~~a~~~A~~qve~GA~iIDVn~~~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~v~eaaLk~~~G~~IINs 443 (1178)
T TIGR02082 365 EDYDEALDIAKQQVENGAQILDINVDYGMLDGVAAMKRFLNLLASEPDISTVPLMLDS-SEWAVLEAGLKCIQGKCIVNS 443 (1178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCCCCeEEEeC-CcHHHHHHHHHhcCCCCEEEe
Confidence 899999999999999999999987643 36667778888877654 2489999996 6789998888874 3334776
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCchHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 267 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~ 267 (741)
=|..+++ ++|.++...|+++|.++=+... ++ -| .|.+.-++-|.+.++
T Consensus 444 Is~~~g~---------------------~~~~~~~~l~~~yga~vV~m~~----de-----~G~p~t~e~r~~i~~~~~~ 493 (1178)
T TIGR02082 444 ISLKDGE---------------------ERFIETAKLIKEYGAAVVVMAF----DE-----EGQARTADRKIEICKRAYN 493 (1178)
T ss_pred CCCCCCC---------------------ccHHHHHHHHHHhCCCEEEEec----CC-----CCCCCCHHHHHHHHHHHHH
Confidence 5553211 2467899999999999966552 21 14 366777889999999
Q ss_pred HHHH-CCC--CceEEE-----EecCC------hhHHHHHHHHHHHHhhcCCC-CccccccccccCCCCCC------chhh
Q 004623 268 ICRK-LDF--HNFLFS-----MKASN------PVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGEDG------RMKS 326 (741)
Q Consensus 268 i~e~-~~F--~diviS-----~KaSn------v~~~i~Ayrlla~~m~~~g~-dyPLHLGVTEAG~~~~G------~IKS 326 (741)
.|.+ .|| +||+|- +-+.. ...++++.|.+.++ + .+|.-+|+.==-.|..| .+.|
T Consensus 494 ~~~~~~Gi~~edIi~DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~-----~pg~~~~~GlSN~SFglp~~~~~R~~ln~ 568 (1178)
T TIGR02082 494 ILTEKVGFPPEDIIFDPNILTIATGIEEHRRYAINFIEAIRWIKEE-----LPDAKISGGVSNVSFSFRGNPAAREAMHS 568 (1178)
T ss_pred HHHHHcCCCHHHEEEeCCccccccCchHHHHHHHHHHHHHHHHHHh-----CCCCceEEEecccccCCCCCchHHHHHHH
Confidence 9887 999 688763 22222 45778888888888 6 79999999988888865 3333
Q ss_pred H---HHHHHHhhcCCCceeEEecCCC-CcccchHHHHHH
Q 004623 327 A---IGIGTLLQDGLGDTIRVSLTEP-PEKEIDPCRRLA 361 (741)
Q Consensus 327 a---iGIG~LL~~GIGDTIRVSLT~d-P~~EV~v~~~il 361 (741)
+ .+|..=|-.+|=|.--..+-++ |.++..+|..++
T Consensus 569 ~FL~~a~~~Gld~aIvnp~~~~~~~~i~~~~~~~~~~~l 607 (1178)
T TIGR02082 569 VFLYHAIRAGMDMGIVNAGKILPYDDIDPELRQVVEDLI 607 (1178)
T ss_pred HHHHHHHHcCCchhhcChhhhhHHHhhCHHHHHHHHHHH
Confidence 2 3444445555655544432222 334455566554
No 41
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.70 E-value=0.74 Score=50.66 Aligned_cols=146 Identities=20% Similarity=0.276 Sum_probs=101.2
Q ss_pred CceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE----------ecCC--HHHHHHHHHHHHh
Q 004623 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRI----------TVQG--KREADACFEIKNS 154 (741)
Q Consensus 87 ~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRv----------avp~--~~~A~al~~I~~~ 154 (741)
....|.||++.|||++++.|-= ...-.+-+..++..++|.++||+++|. +.++ .+.-+.|.+.+++
T Consensus 78 ~~t~v~~~~~~ig~~~~~~IAG--PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 78 EPTVVKVGDVEIGGGKPVVIAG--PCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCCEEEECCEEECCCceEEEEe--cCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH
Confidence 3456899999999988777644 344557888999999999999999996 3333 4555556665554
Q ss_pred hccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 155 LVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 155 L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
..+|++.++|-...+- .+.+.+|-+-|--+|+-+ .++++.+-+.|+||
T Consensus 156 -----~Gl~v~tev~d~~~~~-~l~~~vd~lqIgAr~~~N--------------------------~~LL~~va~~~kPV 203 (335)
T PRK08673 156 -----TGLPIVTEVMDPRDVE-LVAEYVDILQIGARNMQN--------------------------FDLLKEVGKTNKPV 203 (335)
T ss_pred -----cCCcEEEeeCCHHHHH-HHHHhCCeEEECcccccC--------------------------HHHHHHHHcCCCcE
Confidence 7799999998755554 444679999999999965 34778888889998
Q ss_pred EEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE
Q 004623 235 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 235 RIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 281 (741)
.+-.|-- .|.+.+. .|.| .+...|=+++++--
T Consensus 204 --iLk~G~~---------~ti~E~l-~A~e---~i~~~GN~~viL~e 235 (335)
T PRK08673 204 --LLKRGMS---------ATIEEWL-MAAE---YILAEGNPNVILCE 235 (335)
T ss_pred --EEeCCCC---------CCHHHHH-HHHH---HHHHcCCCeEEEEE
Confidence 3322200 1333333 3333 35677878887744
No 42
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=95.60 E-value=2.1 Score=44.31 Aligned_cols=226 Identities=13% Similarity=0.142 Sum_probs=129.5
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcccceee------
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA------ 166 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~--------~A~al~~I~~~L~~~~~~iPLVA------ 166 (741)
.||+.||+-...+-...+..+ ..++++|-+-|=+.+.+.. ....+.++++.|.+.|..|.-++
T Consensus 2 ~~~~~~~~~~~~~~~~~~e~l---~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~ 78 (279)
T TIGR00542 2 KHPLGIYEKALPKGECWLERL---QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRR 78 (279)
T ss_pred CcccceehhhCCCCCCHHHHH---HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCcc
Confidence 367888887777656665554 4556789999888765532 25667888888889998876554
Q ss_pred -cc-CCCH----------HHHHHHhh-h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCC
Q 004623 167 -DI-HFAP----------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 232 (741)
Q Consensus 167 -DI-HF~~----------~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 232 (741)
.+ +.++ +-+++.++ . +..|+++++.... ++...+.++++.+.++++++.|+++|+
T Consensus 79 ~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 79 FPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYY-----------EEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred CcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCccccc-----------CcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 2233 22233333 3 8889886543321 112355677888889999999999998
Q ss_pred eEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhH----HHHHHHHHHHHhhcCCCCcc
Q 004623 233 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV----MVQAYRLLVAEMYVHGWDYP 308 (741)
Q Consensus 233 ~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~----~i~Ayrlla~~m~~~g~dyP 308 (741)
.|-+= |+++ ..+.+.-+.+++++..|-.++.+-+=..+... ..+..++...++ +=
T Consensus 148 ~l~lE-~~~~--------------~~~~t~~~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~~i------~~ 206 (279)
T TIGR00542 148 TLAVE-IMDT--------------PFMSSISKWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQMELQLGIDKI------VA 206 (279)
T ss_pred EEEEe-eCCC--------------chhcCHHHHHHHHHHcCCCceEEEeCcChhhhccCCHHHHHHHhhhhE------EE
Confidence 66332 3321 12333345566778888888888775544321 122233333321 12
Q ss_pred cccc-----ccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC----CCcccchHHHHHH
Q 004623 309 LHLG-----VTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE----PPEKEIDPCRRLA 361 (741)
Q Consensus 309 LHLG-----VTEAG~~~~G~IKSaiGIG~LL~~GIGDTIRVSLT~----dP~~EV~v~~~il 361 (741)
+|+. +.+=-+.-+|.|.=.-=+..|-..|---.+-+-... +|.++++.+.+-+
T Consensus 207 vHikD~~~~~~~~~p~G~G~id~~~~~~aL~~~gy~G~l~iE~~~~~~~~~~~~~~~~~~~l 268 (279)
T TIGR00542 207 IHLKDTKPGQFKDVPFGEGCVDFERCFKTLKQLNYRGPFLIEMWSEKAEEPVAEIIQARDWI 268 (279)
T ss_pred EEeCCCCCCccCCcCCCCCccCHHHHHHHHHHhCCceeEEEEecCCcccChHHHHHHHHHHH
Confidence 3331 111112245666666566677777765566554433 3444454444433
No 43
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.51 E-value=0.65 Score=49.09 Aligned_cols=163 Identities=19% Similarity=0.237 Sum_probs=111.4
Q ss_pred ceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE------ec------CCHHHHHHHHHHHHhh
Q 004623 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRI------TV------QGKREADACFEIKNSL 155 (741)
Q Consensus 88 Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRv------av------p~~~~A~al~~I~~~L 155 (741)
..+|.+|++.||+++++.|-= ...-.|.+.+++...+|.++|..+.|- |. ++.+.-+.|.+++++
T Consensus 11 ~s~i~~~~~~~g~~~~~~IAG--pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~- 87 (260)
T TIGR01361 11 KTVVDVGGVKIGEGSPIVIAG--PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADE- 87 (260)
T ss_pred CCEEEECCEEEcCCcEEEEEe--CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHH-
Confidence 456999999999999887654 445567888999999999999998884 11 245566666666664
Q ss_pred ccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE
Q 004623 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (741)
Q Consensus 156 ~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 235 (741)
..+|.++++|-...+.+. .+.+|-+-|--+++-+ .++++++...|+||=
T Consensus 88 ----~Gl~~~t~~~d~~~~~~l-~~~~d~lkI~s~~~~n--------------------------~~LL~~~a~~gkPVi 136 (260)
T TIGR01361 88 ----HGLPVVTEVMDPRDVEIV-AEYADILQIGARNMQN--------------------------FELLKEVGKQGKPVL 136 (260)
T ss_pred ----hCCCEEEeeCChhhHHHH-HhhCCEEEECcccccC--------------------------HHHHHHHhcCCCcEE
Confidence 779999999876666544 4669999999988865 348888889999994
Q ss_pred EeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEe-cCC------hhHHHHHHHHHHHH
Q 004623 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK-ASN------PVVMVQAYRLLVAE 299 (741)
Q Consensus 236 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K-aSn------v~~~i~Ayrlla~~ 299 (741)
+=..-. .+++ -++.|. +.+.+.|-++|++--= .|. ...-..+-..|.++
T Consensus 137 lk~G~~-----------~t~~-e~~~Av---e~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~ 192 (260)
T TIGR01361 137 LKRGMG-----------NTIE-EWLYAA---EYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKE 192 (260)
T ss_pred EeCCCC-----------CCHH-HHHHHH---HHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh
Confidence 333211 1332 334444 4456788888888332 332 23445566666665
No 44
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=95.47 E-value=0.23 Score=50.41 Aligned_cols=169 Identities=18% Similarity=0.284 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~----------~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdk 184 (741)
.+.+..++++.++.++||+|+=|-..+ .++.+.+..+.+.+++...++||.=|- |++..+.+|+++-.+
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT-~~~~v~~~aL~~g~~ 94 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT-FNPEVAEAALKAGAD 94 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-SSHHHHHHHHHHTSS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC-CCHHHHHHHHHcCcc
Confidence 345778899999999999999997544 556666666666666555789999996 789999999998334
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccC---CCcHHHHhhcC-CCchHHHH
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG---SLSDRIMSYYG-DSPRGMVE 260 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G---SL~~~il~~yg-~t~~amVe 260 (741)
+=+|-.++-. ..+++..|+++|.++=+=.+.| ..++. ..|. +-.+.+++
T Consensus 95 ~ind~~~~~~-------------------------~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~--~~~~~~~~~~i~~ 147 (210)
T PF00809_consen 95 IINDISGFED-------------------------DPEMLPLAAEYGAPVVLMHSDGNPKGMPET--ADYRLDIAEEIIE 147 (210)
T ss_dssp EEEETTTTSS-------------------------STTHHHHHHHHTSEEEEESESSETTTTTSS--HHHSHSHHHHHHH
T ss_pred eEEecccccc-------------------------cchhhhhhhcCCCEEEEEeccccccccccc--chhhhhHHHHHHH
Confidence 4455555431 1347899999999884433332 12222 1222 44578899
Q ss_pred HHHHHHHHHHHCCC--CceEEEEe---cCChhHHHHHHHHHHHHhhcCCCCccccccc
Q 004623 261 SAFEFARICRKLDF--HNFLFSMK---ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGV 313 (741)
Q Consensus 261 SAle~~~i~e~~~F--~diviS~K---aSnv~~~i~Ayrlla~~m~~~g~dyPLHLGV 313 (741)
-+.+.++.|++.|+ ++|+|--= +.+...-.+..+.+..-.. -+.+|+=+|+
T Consensus 148 ~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~--~~~~p~l~~~ 203 (210)
T PF00809_consen 148 FLEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKE--LFGYPILVGG 203 (210)
T ss_dssp HHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHT--TSSSEBEEEE
T ss_pred HHHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHH--hCCCCEEEEE
Confidence 99999999999999 88887421 3333334444444443211 1477876654
No 45
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=95.30 E-value=0.41 Score=60.33 Aligned_cols=211 Identities=16% Similarity=0.225 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccC--CcccceeeccCCCHHHHHHHhhhc-CceeeCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQK--NYNIPLVADIHFAPSVALRVAECF-DKIRVNP 189 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvav--p~~~~A~al~~I~~~L~~~--~~~iPLVADIHF~~~lAl~a~~~v-dkiRINP 189 (741)
.|.+..+++.++..++||+|+=|-+ +...+.+.+.++...+... -+++||+-|- +++..+.+|++++ .|==||-
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~ViEaaLk~~~G~~IINS 459 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDS-SKWEVIEAGLKCIQGKGIVNS 459 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeC-CcHHHHHHHHhhcCCCCEEEe
Confidence 8999999999999999999998875 3356666677777766542 3579999996 6788888888873 3334776
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCchHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 267 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~ 267 (741)
=|..+++ ++|.+++..||++|.++=+... ++ -| +|.+.=++-|.+.++
T Consensus 460 Is~~~~~---------------------~~~~~~~~l~~kyga~vV~m~~----de-----~G~~~t~e~r~~ia~r~~~ 509 (1229)
T PRK09490 460 ISLKEGE---------------------EKFIEHARLVRRYGAAVVVMAF----DE-----QGQADTRERKIEICKRAYD 509 (1229)
T ss_pred CCCCCCC---------------------ccHHHHHHHHHHhCCCEEEEec----CC-----CCCCCCHHHHHHHHHHHHH
Confidence 6663322 2577899999999999966652 21 24 478888999999999
Q ss_pred HHHH-CCC--CceE-----EEEecC------ChhHHHHHHHHHHHHhhcCCC-CccccccccccCCCCC------Cchhh
Q 004623 268 ICRK-LDF--HNFL-----FSMKAS------NPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGED------GRMKS 326 (741)
Q Consensus 268 i~e~-~~F--~div-----iS~KaS------nv~~~i~Ayrlla~~m~~~g~-dyPLHLGVTEAG~~~~------G~IKS 326 (741)
++.+ +|| +||+ +.+++. ...++++|-|++.+. + .....+||.==--|.. -.+.|
T Consensus 510 ~~~~~~Gi~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~-----~P~~~~~~GlSNiSFgl~g~~~~R~~lns 584 (1229)
T PRK09490 510 ILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQN-----LPHAKISGGVSNVSFSFRGNNPVREAIHA 584 (1229)
T ss_pred HHHHHcCCCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHH-----CCCCcEEEeeccccccCCCCCchHHHHHH
Confidence 8865 999 5555 466654 468899999999988 3 2348888887666662 22333
Q ss_pred H---HHHHHHhhcCCCceeEEecCCC-CcccchHHHHHH
Q 004623 327 A---IGIGTLLQDGLGDTIRVSLTEP-PEKEIDPCRRLA 361 (741)
Q Consensus 327 a---iGIG~LL~~GIGDTIRVSLT~d-P~~EV~v~~~il 361 (741)
+ .++..=|-.+|=|.--...-++ |.++..+|..++
T Consensus 585 ~FL~~a~~aGld~aIvnp~~~~~~~~i~~e~~~~~~~~l 623 (1229)
T PRK09490 585 VFLYHAIKAGMDMGIVNAGQLAIYDDIPPELREAVEDVV 623 (1229)
T ss_pred HHHHHHHHcCcchhhcCccccccccccCHHHHHHHHHHH
Confidence 2 3455556666766655444433 345556666654
No 46
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=95.20 E-value=0.076 Score=58.49 Aligned_cols=73 Identities=15% Similarity=0.342 Sum_probs=57.8
Q ss_pred HHHHHHhhcccC----cceeecCCC---CccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCC
Q 004623 627 FNLLQGCRMRNT----KTEYVSCPS---CGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAP 699 (741)
Q Consensus 627 ~~ILQa~rlR~~----kte~ISCPs---CGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmaDAD~GyvGg~p 699 (741)
...|+.+++-.. ....++||+ |...+.|-++.+.++.+.+....++||.|-||. ||=|.-.-||+|++|..+
T Consensus 310 ~~~l~~~gl~~~~~~~~~~v~aC~G~~~C~~~~~~t~~~a~~l~~~~~~~~~~~i~vSGC~-n~C~~~~~adiG~~G~~~ 388 (390)
T TIGR02435 310 QRALAALGLVTSASDPRARIIACTGAPGCASALADTRADAEALAAYCEPTAPITVHLSGCA-KGCAHPGPAAITLVAAGA 388 (390)
T ss_pred HHHHHHCCCCcCCCCCeeeEEECCCccccccchhhHHHHHHHHHHHhcccCCcEEEEeCCc-ccccCCCCCCEEEEecCC
Confidence 455666655422 235789975 999999999999999988876556999999995 889999999999999754
Q ss_pred c
Q 004623 700 G 700 (741)
Q Consensus 700 G 700 (741)
|
T Consensus 389 g 389 (390)
T TIGR02435 389 G 389 (390)
T ss_pred C
Confidence 4
No 47
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=95.03 E-value=1.1 Score=46.50 Aligned_cols=142 Identities=14% Similarity=0.198 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeC-C
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-P 189 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~--~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN-P 189 (741)
.-.++..++=+..|.++|.+.+-+..|.+ .+.+.+..|++. +.+..+.|=...+++-...|.++ ++.||+- |
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~----~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVAL----GLPARLIVWCRAVKEDIEAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhc----CCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEe
Confidence 34567777778889999999999999966 444567777663 33455665555777766677776 8888872 2
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~ 269 (741)
-+=-...++ +..-.+.+-+++.+.++.||++|..++++.-..+- .+++-+ .+.++.+
T Consensus 92 ~s~~~~~~~----------~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---------~~~~~~----~~~~~~~ 148 (259)
T cd07939 92 VSDIHLAHK----------LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR---------ADPDFL----IEFAEVA 148 (259)
T ss_pred cCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC---------CCHHHH----HHHHHHH
Confidence 221110111 11123344556788999999999999887643321 234333 4455566
Q ss_pred HHCCCCceEEEEecC
Q 004623 270 RKLDFHNFLFSMKAS 284 (741)
Q Consensus 270 e~~~F~diviS~KaS 284 (741)
.+.|-+. |+++-|
T Consensus 149 ~~~G~~~--i~l~DT 161 (259)
T cd07939 149 QEAGADR--LRFADT 161 (259)
T ss_pred HHCCCCE--EEeCCC
Confidence 6677664 566655
No 48
>PRK13753 dihydropteroate synthase; Provisional
Probab=94.95 E-value=2.5 Score=45.63 Aligned_cols=209 Identities=13% Similarity=0.089 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCH------HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITV----QGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvav----p~~------~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vd 183 (741)
.|.+..++++.++.+.|+|||=|-. |+. ++.+-+..+.+.|++. .+|+--|- |++..|.+|+++ ++
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~ISIDT-~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRVSIDS-FQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcEEEEC-CCHHHHHHHHHcCCC
Confidence 5889999999999999999999864 432 3555454555556654 47877775 889999999987 66
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC--CcHH-HHhhcCCCchHHHH
Q 004623 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS--LSDR-IMSYYGDSPRGMVE 260 (741)
Q Consensus 184 kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS--L~~~-il~~yg~t~~amVe 260 (741)
= ||-=+=.. . ..+.+.+.++++|+=+==+.|. -+.. ....|.+--+.+..
T Consensus 99 i--INDVsg~~-d------------------------~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~ 151 (279)
T PRK13753 99 Y--LNDIQGFP-D------------------------PALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVR 151 (279)
T ss_pred E--EEeCCCCC-c------------------------hHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHH
Confidence 3 44321111 1 2255667788888866554331 1111 11223222234555
Q ss_pred HHHHHHHHHHHCCC--CceEEE-----EecCChhHHHHHHHHHHHHhhcCCCCcccccccc------cc-CCCCCCchhh
Q 004623 261 SAFEFARICRKLDF--HNFLFS-----MKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT------EA-GEGEDGRMKS 326 (741)
Q Consensus 261 SAle~~~i~e~~~F--~diviS-----~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVT------EA-G~~~~G~IKS 326 (741)
.-.+.++.|++.|. ++|++- -|+.+...-.+-.+.|.+-. ..+.||+=+|+. +. |....-|.-.
T Consensus 152 ~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~--~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~ 229 (279)
T PRK13753 152 FFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLK--SALGLPLLVSVSRKSFLGATVGLPVKDLGPA 229 (279)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHH--HhCCCceEEEccHhHHHHHHcCCChhhhhHh
Confidence 55566888999998 678875 45445444444333332221 016899988842 11 2233455666
Q ss_pred HHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHH
Q 004623 327 AIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN 362 (741)
Q Consensus 327 aiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~ 362 (741)
+++...++...=.|-||| +.|+..++.++
T Consensus 230 T~a~~~~a~~~Ga~ivRv-------HdV~~~~~a~~ 258 (279)
T PRK13753 230 SLAAELHAIGNGADYVRT-------HAPGDLRSAIT 258 (279)
T ss_pred HHHHHHHHHHcCCCEEEe-------CCHHHHHHHHH
Confidence 666666555555677775 34555444444
No 49
>PLN02431 ferredoxin--nitrite reductase
Probab=94.65 E-value=0.21 Score=58.43 Aligned_cols=105 Identities=15% Similarity=0.246 Sum_probs=72.0
Q ss_pred HHHHHHhhcccCcc------eeecCCCCcc---ccccHHHHHHHHHHHh----------cCCC-CcEEEEeeeeecCCCC
Q 004623 627 FNLLQGCRMRNTKT------EYVSCPSCGR---TLFDLQEISAEIREKT----------SHLP-GVSIAIMGCIVNGPGE 686 (741)
Q Consensus 627 ~~ILQa~rlR~~kt------e~ISCPsCGR---TlfDLq~~~~~Ik~~t----------~hLk-gvkIAVMGCIVNGPGE 686 (741)
+.-|+++||-...+ +.+.||.-|. -++|...++.++.+.+ .+|| -.||||-||.-|. ..
T Consensus 191 ~~~L~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkiavsG~~~~~-~~ 269 (587)
T PLN02431 191 LKGLEEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVCVVGSHDLF-EH 269 (587)
T ss_pred HHHHHHcCCCchhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEEEecCcccc-cc
Confidence 34466666664433 4889998665 4789999999998875 3688 6899999998554 45
Q ss_pred CCCCceeeecCC-Cc--eeEeeecceee----------eecCChhHHHHHHHHH---HHhcc
Q 004623 687 MADADFGYVGGA-PG--KIDLYVGKTVV----------KRGIAMEQATDALIQL---IKDHG 732 (741)
Q Consensus 687 maDAD~GyvGg~-pG--ki~LY~gke~V----------~r~Ipeeeavd~Li~l---Ik~~g 732 (741)
..-.|+|+++.. .| .+++|+|+..= ..-|+++++++-+... -+++|
T Consensus 270 ~~~nDigf~~~~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G 331 (587)
T PLN02431 270 PHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPADDVVPLCKAILEAFRDLG 331 (587)
T ss_pred ccccceEEEEEEECCceEEEEEEeCCcCCCCccccchhhcccCHHHHHHHHHHHHHHHHHhC
Confidence 556899999853 22 47899987321 1127888888754444 44555
No 50
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.60 E-value=1.9 Score=45.53 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceee-CC-
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP- 189 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI-NP- 189 (741)
-.++.-++=+..|.++|.+.+-+..| +.++++++..+.+. +....+.+=.=-+++-...|+++ ++.||| -|
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~----~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~ 94 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKL----GLKAKILTHIRCHMDDARIAVETGVDGVDLVFGT 94 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhC----CCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEec
Confidence 45677788889999999999999755 45677778777653 22233333333445555567776 999997 23
Q ss_pred ------CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 190 ------GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 190 ------GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAl 263 (741)
.|++. ..+..-+++.++++.||++|..++++.-..+ + +| .+-..
T Consensus 95 S~~~~~~~~~~-----------------~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~---------r-~~---~~~l~ 144 (262)
T cd07948 95 SPFLREASHGK-----------------SITEIIESAVEVIEFVKSKGIEVRFSSEDSF---------R-SD---LVDLL 144 (262)
T ss_pred CHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC---------C-CC---HHHHH
Confidence 33332 1234455678899999999999999873222 2 22 22344
Q ss_pred HHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 264 EFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 264 e~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
+.++.+.+.|-+. |+++-| +|..+-+-++.+.++
T Consensus 145 ~~~~~~~~~g~~~--i~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 145 RVYRAVDKLGVNR--VGIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred HHHHHHHHcCCCE--EEECCcCCCCCHHHHHHHHHHHHHh
Confidence 6777777888774 566655 455555555555544
No 51
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.44 E-value=7.6 Score=40.80 Aligned_cols=195 Identities=19% Similarity=0.260 Sum_probs=112.8
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcccceee
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~---~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
.|.|+++.+|++.|..+=+.+- .+.+..++|+.++...|||+|=+-+--. .+.+.+..+...|++.-.++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~i~v~l~~---~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~ 79 (253)
T PRK02412 3 TVTVKNLVIGEGAPKIIVPIMG---KTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLF 79 (253)
T ss_pred eeEEeceEeCCCCcEEEEEeCC---CCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 5789999999999988877753 4577888899999999999985554322 223444444444444333589998
Q ss_pred ccCCCH-------H--HHHHHhhhcCceeeC-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 167 DIHFAP-------S--VALRVAECFDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 167 DIHF~~-------~--lAl~a~~~vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
-+=-.. . .=++.++.+ +|.+ | .+-| .+++ .=++.++++++.+++.++.+ |
T Consensus 80 T~R~~~eGG~~~~~~~~~~~ll~~~--~~~~~~-d~vD-------iEl~---------~~~~~~~~l~~~~~~~~~kv-I 139 (253)
T PRK02412 80 TFRTAKEGGEIALSDEEYLALIKAV--IKSGLP-DYID-------VELF---------SGKDVVKEMVAFAHEHGVKV-V 139 (253)
T ss_pred EECChhhCCCCCCCHHHHHHHHHHH--HhcCCC-CEEE-------Eecc---------CChHHHHHHHHHHHHcCCEE-E
Confidence 542111 1 001111111 2222 2 2222 1111 11245778999999888875 4
Q ss_pred eeccCCCcHHHHhhcCCCc--hHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccccc
Q 004623 237 GTNHGSLSDRIMSYYGDSP--RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (741)
Q Consensus 237 GvN~GSL~~~il~~yg~t~--~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVT 314 (741)
+-.| .+..|| +.| .+.++-+++.|.+=++|-..+.+..+..+-.+...+ ..+.+.+.|+ +++
T Consensus 140 ~S~H---------~f~~tP~~~~l----~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~-~~~~~~~~P~-i~~- 203 (253)
T PRK02412 140 LSYH---------DFEKTPPKEEI----VERLRKMESLGADIVKIAVMPQSEQDVLTLLNATRE-MKELYADQPL-ITM- 203 (253)
T ss_pred EeeC---------CCCCCcCHHHH----HHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHH-HHhcCCCCCE-EEE-
Confidence 4433 122355 333 457778889999999999988877665554433322 1222345674 222
Q ss_pred ccCCCCCCchh
Q 004623 315 EAGEGEDGRMK 325 (741)
Q Consensus 315 EAG~~~~G~IK 325 (741)
++|.-|++-
T Consensus 204 --~MG~~G~~S 212 (253)
T PRK02412 204 --SMGKLGRIS 212 (253)
T ss_pred --eCCCCchHH
Confidence 367777664
No 52
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=94.44 E-value=0.32 Score=52.16 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=48.3
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCC
Q 004623 641 EYVSCPS---CGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA 698 (741)
Q Consensus 641 e~ISCPs---CGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~ 698 (741)
+.++||+ |.--.+|.+++++++.+.+...| .+||+|.||. |+.+...-+|+|++|..
T Consensus 102 ~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~~~~~k~ki~iSGCp-~~C~~~~~~DiG~~g~~ 162 (314)
T TIGR02912 102 NITACIGNRVCPFANYDTTKFAKRIEKAVFPNDYHVKIALTGCP-NDCAKARMHDFGIIGMT 162 (314)
T ss_pred ceeeCCCCCCCCCCcccHHHHHHHHHHHhhcCCceEEEEEeCCC-chhhHHHHhhccccccc
Confidence 5789996 77778999999999999886666 7999999998 67777778999999853
No 53
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=94.41 E-value=0.16 Score=58.51 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=62.4
Q ss_pred CCCCccccccHHHHHHHHHHHh-----------------------------cCCC-CcEEEEeeeeecCCCCCCCCceee
Q 004623 645 CPSCGRTLFDLQEISAEIREKT-----------------------------SHLP-GVSIAIMGCIVNGPGEMADADFGY 694 (741)
Q Consensus 645 CPsCGRTlfDLq~~~~~Ik~~t-----------------------------~hLk-gvkIAVMGCIVNGPGEmaDAD~Gy 694 (741)
||.||-...|.++++.++.+.+ ..|| -.||||=||.-|. ....-+|+|+
T Consensus 141 ~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKi~isg~~~~~-~~~~~~DiG~ 219 (541)
T TIGR02041 141 NPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTYLPRKFKTGVVIPPIND-VDVYANDLGF 219 (541)
T ss_pred CcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccccCCcccCccccccCCCCCcEEEEECCCCcc-ccccccceEE
Confidence 4578888888888888886531 2488 7899999999774 5667899999
Q ss_pred ecCCC-c---eeEeeecce----------------eeeecCChhHHHHHHHHHHH---hccc
Q 004623 695 VGGAP-G---KIDLYVGKT----------------VVKRGIAMEQATDALIQLIK---DHGR 733 (741)
Q Consensus 695 vGg~p-G---ki~LY~gke----------------~V~r~Ipeeeavd~Li~lIk---~~g~ 733 (741)
++... | ..++|.|+. .+. -||++++++-+..+++ ++|+
T Consensus 220 ~a~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~g~ 280 (541)
T TIGR02041 220 VAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLANEIG-FIPPEHTLAVAEAIVTTQRDFGN 280 (541)
T ss_pred EEEEeCCcEEEEEEEEeccccCCCCCcCCCCccccccC-CCCHHHHHHHHHHHHHHHHHhCC
Confidence 98532 2 367888763 333 5899998886555554 4553
No 54
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=93.85 E-value=1.4 Score=49.30 Aligned_cols=153 Identities=17% Similarity=0.150 Sum_probs=93.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcccceeeccCCC---HHHHHHHhhh-cCc
Q 004623 111 TNDTKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFA---PSVALRVAEC-FDK 184 (741)
Q Consensus 111 ~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~--~~~A~al~~I~~~L~~~~~~iPLVADIHF~---~~lAl~a~~~-vdk 184 (741)
--|..+.+..++.+.++.+.|.+++=+..|. ...++.+++|++. .-..-+++|+|+- -..+..|+++ ++-
T Consensus 9 alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~----~~~~~ii~D~kl~d~g~~~v~~a~~aGAdg 84 (430)
T PRK07028 9 ALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKN----FPDHTIVADMKTMDTGAIEVEMAAKAGADI 84 (430)
T ss_pred EeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHH----CCCCEEEEEeeeccchHHHHHHHHHcCCCE
Confidence 4567788999999999999999999876554 3456677777764 2234578999995 2233345555 776
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee-ccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAl 263 (741)
|-+- |- .+ . ..+.++++.|+++|..+-+|+ |.. ++ .
T Consensus 85 V~v~-g~-~~-~---------------------~~~~~~i~~a~~~G~~~~~g~~s~~------------t~-------~ 121 (430)
T PRK07028 85 VCIL-GL-AD-D---------------------STIEDAVRAARKYGVRLMADLINVP------------DP-------V 121 (430)
T ss_pred EEEe-cC-CC-h---------------------HHHHHHHHHHHHcCCEEEEEecCCC------------CH-------H
Confidence 6653 21 01 0 124678999999999987773 211 11 2
Q ss_pred HHHHHHHHCCCCceEEEE---ecCChhHHHHHHHHHHHHhhcCCCCccc--cccccc
Q 004623 264 EFARICRKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYVHGWDYPL--HLGVTE 315 (741)
Q Consensus 264 e~~~i~e~~~F~diviS~---KaSnv~~~i~Ayrlla~~m~~~g~dyPL--HLGVTE 315 (741)
+.++.+.++|.+-|.+.. +.+......+..+.+.+. +++|+ |=|||.
T Consensus 122 e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-----~~iPI~a~GGI~~ 173 (430)
T PRK07028 122 KRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEE-----VSIPIAVAGGLDA 173 (430)
T ss_pred HHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhh-----CCCcEEEECCCCH
Confidence 234556677887776653 111112234455555555 45665 445543
No 55
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.77 E-value=2.2 Score=43.34 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCH--------HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-c
Q 004623 112 NDTKDVAGTVEEVMRIADQGADLVRITVQGK--------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-F 182 (741)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~--------~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-v 182 (741)
....+.+..++=+..|.++|+++|=+..|.. ...+.++.+++. +-++++.+...=..+.+..+.++ +
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~----~~~~~~~~l~~~~~~~i~~a~~~g~ 88 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKL----VPNVKLQALVRNREKGIERALEAGV 88 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhc----cCCcEEEEEccCchhhHHHHHhCCc
Confidence 3445778888889999999999999998764 455566666664 43577777665446667777777 8
Q ss_pred Cceee-CCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee-ccCCCcHHHHhhcCCCchHHHH
Q 004623 183 DKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVE 260 (741)
Q Consensus 183 dkiRI-NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVe 260 (741)
+-||| -+++=....+ .+....+...++..+.++.||++|..+++.+ ....- ..+++-
T Consensus 89 ~~i~i~~~~s~~~~~~----------~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~--------~~~~~~--- 147 (265)
T cd03174 89 DEVRIFDSASETHSRK----------NLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC--------KTDPEY--- 147 (265)
T ss_pred CEEEEEEecCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC--------CCCHHH---
Confidence 88885 3333100000 0112222334557778999999999999887 33320 012222
Q ss_pred HHHHHHHHHHHCCCCceEE--EEecCChhHHHHHHHHHHHH
Q 004623 261 SAFEFARICRKLDFHNFLF--SMKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 261 SAle~~~i~e~~~F~divi--S~KaSnv~~~i~Ayrlla~~ 299 (741)
..+.++.+.++|.+.|.+ +.=...+..+-+-++.+.++
T Consensus 148 -l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 148 -VLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred -HHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 234566667778776554 23334566666666666655
No 56
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.71 E-value=4.6 Score=42.30 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeecc---CCCHHHHHHHhhh--cCceee
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADI---HFAPSVALRVAEC--FDKIRV 187 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVADI---HF~~~lAl~a~~~--vdkiRI 187 (741)
-..+..++=+..|.++|.+.|-+..| +.++.+.+..+.+. .-+.++.|=. ..+-+.|.++-.. ++.|||
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~----~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i 92 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIARE----VLNAEICGLARAVKKDIDAAAEALKPAKVDRIHT 92 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHh----CCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEE
Confidence 45667777788999999999999987 46778777777764 2235555433 2334455554322 788887
Q ss_pred C-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHH
Q 004623 188 N-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFA 266 (741)
Q Consensus 188 N-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~ 266 (741)
- |-|=....++|. .-.+..-+.+.+.++.||++|..++++.-.++- .+++ -..+.+
T Consensus 93 ~~~~s~~~~~~~~~----------~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---------~~~~----~~~~~~ 149 (268)
T cd07940 93 FIATSDIHLKYKLK----------KTREEVLERAVEAVEYAKSHGLDVEFSAEDATR---------TDLD----FLIEVV 149 (268)
T ss_pred EecCCHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCC---------CCHH----HHHHHH
Confidence 3 322111111111 111223355788999999999988876533221 1332 233455
Q ss_pred HHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 267 RICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 267 ~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
+.+.+.|-+ .|++|-| .|..+-+-++.+.+.
T Consensus 150 ~~~~~~G~~--~i~l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 150 EAAIEAGAT--TINIPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHcCCC--EEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 555666765 4677776 666666666666655
No 57
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.63 E-value=2.6 Score=42.79 Aligned_cols=143 Identities=22% Similarity=0.234 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEE--EEecCCHHHHHHHHHHHHhhc-cCCcccceeeccCC----------CHHH---HHH
Q 004623 114 TKDVAGTVEEVMRIADQGADLV--RITVQGKREADACFEIKNSLV-QKNYNIPLVADIHF----------APSV---ALR 177 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiV--Rvavp~~~~A~al~~I~~~L~-~~~~~iPLVADIHF----------~~~l---Al~ 177 (741)
..+.+..+.|+.+..++||+.| -+...+....+.+.++++-.. .+++.+|+|.|.|. ...+ +..
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 4677888889999999999965 444444443333333333111 12478999999876 2222 334
Q ss_pred Hhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCch
Q 004623 178 VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (741)
Q Consensus 178 a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~ 256 (741)
|.+. +|=|-+++.. +. +.++++++. ..+|+ +-.|+... .|+
T Consensus 152 a~~~GaD~Ik~~~~~--~~----------------------~~~~~i~~~---~~~pv---v~~GG~~~-------~~~- 193 (235)
T cd00958 152 GAELGADIVKTKYTG--DA----------------------ESFKEVVEG---CPVPV---VIAGGPKK-------DSE- 193 (235)
T ss_pred HHHHCCCEEEecCCC--CH----------------------HHHHHHHhc---CCCCE---EEeCCCCC-------CCH-
Confidence 5555 7777775321 10 124444443 34665 44565411 232
Q ss_pred HHHHHHHHHHHHHHHCCCCceEEE---EecCChhHHHHHHHHHH
Q 004623 257 GMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLV 297 (741)
Q Consensus 257 amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~i~Ayrlla 297 (741)
+.+++.++.+.+.|.+-+.++ +++.|+..++++++.+.
T Consensus 194 ---~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 194 ---EEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred ---HHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 446778888888999888776 78889988888887653
No 58
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=93.53 E-value=11 Score=41.53 Aligned_cols=186 Identities=15% Similarity=0.206 Sum_probs=118.8
Q ss_pred CCceeEEEceeecCCC---Cc-eEEEec----------cCCCCCCHHHH---HHHHHHHHH-cCCC-EEEEecCCHHHHH
Q 004623 86 RKTRTVMVGNVAIGSE---HP-IRVQTM----------TTNDTKDVAGT---VEEVMRIAD-QGAD-LVRITVQGKREAD 146 (741)
Q Consensus 86 r~Tr~V~VG~V~IGG~---~P-I~VQSM----------t~t~T~Dv~at---v~Qi~~L~~-aGce-iVRvavp~~~~A~ 146 (741)
++.+.+.||+|+|||. +| +-+=|| ..+-.-|=++. ++|..+|.+ .|.- ++-|-..+.++
T Consensus 6 ~~q~v~~i~g~kiGGqpGe~ptvL~gsiFY~~h~iV~D~~~G~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~~~ea-- 83 (308)
T PRK00979 6 KEQKVYDIGGVKIGGQPGEYPTVLIGSIFYAGHKIVSDEKKGIFDKEKAEALINRQEELSDKTGNPALLDVVGESPEA-- 83 (308)
T ss_pred cccEEEEECCEEECCCCCCCCceEEEEeeecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHH--
Confidence 3567899999999964 44 566677 33334555544 555555543 4665 55555554444
Q ss_pred HHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhc------CceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhH
Q 004623 147 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECF------DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (741)
Q Consensus 147 al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~v------dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~ 220 (741)
+.+..+.+.+ -+++||+=|.- ++....+|++.+ ++.=||-=|.-..+
T Consensus 84 -m~k~I~~v~~-~~d~Pl~IDSt-~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~------------------------ 136 (308)
T PRK00979 84 -MEKYIDFVSE-ITDLPFLIDST-SPEARIAAAKYATELGLADRAIYNSINPSIEE------------------------ 136 (308)
T ss_pred -HHHHHHHHHh-cCCCCEEEeCC-CHHHHHHHHHHhhhcCCCCceEEEeccCCCCH------------------------
Confidence 3333333322 48899999975 466666666664 35557776663211
Q ss_pred HHHHHHHHhcCCeEEEe--eccCCCcHHHHhhcCCCchHHHHHHHH--------HHHHHHHCCCCceEEEEec---CChh
Q 004623 221 SPLVEKCKKYGRAVRIG--TNHGSLSDRIMSYYGDSPRGMVESAFE--------FARICRKLDFHNFLFSMKA---SNPV 287 (741)
Q Consensus 221 ~~vv~~ake~g~~IRIG--vN~GSL~~~il~~yg~t~~amVeSAle--------~~~i~e~~~F~diviS~Ka---Snv~ 287 (741)
+.++.+|++|++.=|+ .|-| ++|+++=++-+.+ .++++++.|+.|+.|-.=+ |...
T Consensus 137 -eel~llk~yg~aavIvLa~d~~----------~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~ 205 (308)
T PRK00979 137 -EEIEALKESDIKAAIVLAFDPM----------DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSG 205 (308)
T ss_pred -HHHHHHHHhCCceEEEEEcCCC----------CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHH
Confidence 2258899999774444 3332 1367777777777 7888899999888774211 2267
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccccccc
Q 004623 288 VMVQAYRLLVAEMYVHGWDYPLHLGVTEA 316 (741)
Q Consensus 288 ~~i~Ayrlla~~m~~~g~dyPLHLGVTEA 316 (741)
.++++-+++.++ +.||.=+|+.=.
T Consensus 206 ~tl~aI~~iK~~-----~G~pt~~GlSNi 229 (308)
T PRK00979 206 AAIRAIFAVKAK-----FGYPVGCAPHNA 229 (308)
T ss_pred HHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence 889999998888 678877776543
No 59
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.36 E-value=0.61 Score=52.63 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeC--CCC
Q 004623 118 AGTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN--PGN 191 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvav---p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN--PGN 191 (741)
+.+.+++..|.++|+|++=|.+ .+....+.+++||+. -.++|++|=-=.++.-|..++++ +|.|++- ||-
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~----~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~ 298 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKT----YPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGS 298 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHh----CCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCc
Confidence 4567889999999999999999 667777788888875 12699999445678899999998 9999954 774
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
+...+. +...-+. . -..+.++.+.|+++++||
T Consensus 299 ~~~t~~-~~~~g~p---------~-~~~i~~~~~~~~~~~vpv 330 (450)
T TIGR01302 299 ICTTRI-VAGVGVP---------Q-ITAVYDVAEYAAQSGIPV 330 (450)
T ss_pred CCccce-ecCCCcc---------H-HHHHHHHHHHHhhcCCeE
Confidence 432110 0000000 0 124566888899999987
No 60
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=93.27 E-value=1.7 Score=47.28 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=100.2
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeC----CCCCCc
Q 004623 121 VEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFAD 194 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRva-vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN----PGNig~ 194 (741)
..++..|+++|||+|=-| ++.. +.+.+..+|++ +++|+|||+- +..=|+.+++. +|-||-- -||+..
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrp-ad~~~~~~K~~-----f~~~fmad~~-~l~EAlrai~~GadmI~Ttge~gtg~v~~ 158 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTP-ADEEYHIDKWD-----FTVPFVCGAR-NLGEALRRIAEGAAMIRTKGEAGTGNVVE 158 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc-hHHHHHHHHHH-----cCCCEEccCC-CHHHHHHHHHCCCCeeeccCCCCCccHHH
Confidence 889999999999999432 2222 34566677775 7999999996 46667778776 9999977 677754
Q ss_pred hhhhc--------cccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE-EeeccCCCcHHHHhhcCCCchHHHHHHHHH
Q 004623 195 RRAQF--------EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (741)
Q Consensus 195 ~~k~f--------~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR-IGvN~GSL~~~il~~yg~t~~amVeSAle~ 265 (741)
--+.. .-.-||+++-...-....--|.-+-+.++..++|+= |. -|-+ .||+ .
T Consensus 159 av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~A--eGGI---------~TPe--------d 219 (293)
T PRK04180 159 AVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFA--AGGI---------ATPA--------D 219 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEE--eCCC---------CCHH--------H
Confidence 21111 133578766222111112223333334444567761 12 1222 2552 4
Q ss_pred HHHHHHCCCCceEEE---EecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004623 266 ARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPLH 310 (741)
Q Consensus 266 ~~i~e~~~F~diviS---~KaSnv~~~i~Ayrlla~~m~~~g~dyPLH 310 (741)
+..+-++|.+-+.+. +|+.|+..+.++++..... |+-|=-
T Consensus 220 aa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~~~ 262 (293)
T PRK04180 220 AALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH-----YDDPEV 262 (293)
T ss_pred HHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH-----cCCHHH
Confidence 444556888888775 6889999999999998888 776643
No 61
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.27 E-value=1 Score=45.59 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHh-hh-cCceee-CC
Q 004623 116 DVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVA-EC-FDKIRV-NP 189 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRva--vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~-~~-vdkiRI-NP 189 (741)
..+.-++=+..|.++|-++|-+. .-+.++.+.++.+.+.+.. ..+......+.. -+.|++++ +. ++-||| .|
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 34455555678999999999999 4567888899999887665 223333332222 22333322 34 888884 23
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~ 269 (741)
.|=....++ +....+.+-+++.++++.||++|..++++.-..|- + ++ +-.++.++.+
T Consensus 90 ~s~~~~~~~----------~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~-------~--~~----~~~~~~~~~~ 146 (237)
T PF00682_consen 90 VSDLHIRKN----------LNKSREEALERIEEAVKYAKELGYEVAFGCEDASR-------T--DP----EELLELAEAL 146 (237)
T ss_dssp TSHHHHHHH----------TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG-------S--SH----HHHHHHHHHH
T ss_pred ccHHHHHHh----------hcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccc-------c--cH----HHHHHHHHHH
Confidence 332111111 12233444556777999999999999888754432 1 23 3445667777
Q ss_pred HHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 270 RKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 270 e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
.+.|.+.| +++-| .|..+-+-++.+.+.
T Consensus 147 ~~~g~~~i--~l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 147 AEAGADII--YLADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp HHHT-SEE--EEEETTS-S-HHHHHHHHHHHHHH
T ss_pred HHcCCeEE--EeeCccCCcCHHHHHHHHHHHHHh
Confidence 77788764 66644 344444444555544
No 62
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=92.97 E-value=4.9 Score=42.47 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CC-HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhc-CceeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITV-QG-KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECF-DKIRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvav-p~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~v-dkiRINPGN 191 (741)
.|.+..+++++++.++||+|+=|-. |+ ..+.+.+.++...+.+. +++|+.-|- |++..+.+|++.+ ..-=||-=+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~-~~~piSIDT-~~~~v~e~aL~~~~G~~iINsIs 100 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATE-PTVPLMLDS-TNWEVIEAGLKCCQGKCVVNSIN 100 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-cCCcEEeeC-CcHHHHHHHHhhCCCCcEEEeCC
Confidence 7889999999999999999998875 22 23344566665545432 489999997 5899999999864 222255444
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccC-CCcHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFEFARICR 270 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G-SL~~~il~~yg~t~~amVeSAle~~~i~e 270 (741)
-... ++++.++++.++++|.++=+=.+.. ..+ .|++.-.+.+.+.++.+.
T Consensus 101 ~~~~---------------------~e~~~~~~~~~~~~~~~vV~m~~~~~g~p--------~t~~~~~~~~~~~~~~~~ 151 (252)
T cd00740 101 LEDG---------------------EERFLKVARLAKEHGAAVVVLAFDEQGQA--------KTRDKKVEIAERAYEALT 151 (252)
T ss_pred CCCC---------------------ccccHHHHHHHHHhCCCEEEeccCCCCCC--------CCHHHHHHHHHHHHHHHH
Confidence 2110 1235667788999998884433210 011 133444566666666665
Q ss_pred H-CCC--CceEE-----EEecCC------hhHHHHHHHHHHHHhhcCCC-Ccccccccc
Q 004623 271 K-LDF--HNFLF-----SMKASN------PVVMVQAYRLLVAEMYVHGW-DYPLHLGVT 314 (741)
Q Consensus 271 ~-~~F--~divi-----S~KaSn------v~~~i~Ayrlla~~m~~~g~-dyPLHLGVT 314 (741)
+ .|. ++|++ -.|+.+ ....+++++.+.++ + .||+-+|+.
T Consensus 152 ~~~gi~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~-----~p~~pil~G~S 205 (252)
T cd00740 152 EFVGFPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKER-----LPAVKISLGVS 205 (252)
T ss_pred HHcCCCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhh-----CCCCCEEEEec
Confidence 4 453 56665 346432 34457888888777 5 699999985
No 63
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=92.91 E-value=7.4 Score=40.68 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe-------------cCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHHH
Q 004623 112 NDTKDVAGTVEEVMRIADQGADLVRIT-------------VQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALR 177 (741)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRva-------------vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 177 (741)
.-.-+.+..++-+..|.++|.+.+=+. -|...+.+.++.+++... ++.+-...+-+. +++-...
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~--~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK--QAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc--CCEEEEEecCCccCHHHHHH
Confidence 334567778888899999999999998 344556677788876532 233222222112 2333445
Q ss_pred Hhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCch
Q 004623 178 VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (741)
Q Consensus 178 a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~ 256 (741)
|+++ ++.|||- -. .. +. ..+.+.++.||++|..+++.+-.. +..+|
T Consensus 94 a~~~g~~~iri~----~~-~s--------------~~----~~~~~~i~~ak~~G~~v~~~~~~~---------~~~~~- 140 (263)
T cd07943 94 AADLGVDVVRVA----TH-CT--------------EA----DVSEQHIGAARKLGMDVVGFLMMS---------HMASP- 140 (263)
T ss_pred HHHcCCCEEEEE----ec-hh--------------hH----HHHHHHHHHHHHCCCeEEEEEEec---------cCCCH-
Confidence 6666 9999971 11 00 00 146779999999999888876222 11244
Q ss_pred HHHHHHHHHHHHHHHCCCCceEEEEec----CChhHHHHHHHHHHHH
Q 004623 257 GMVESAFEFARICRKLDFHNFLFSMKA----SNPVVMVQAYRLLVAE 299 (741)
Q Consensus 257 amVeSAle~~~i~e~~~F~diviS~Ka----Snv~~~i~Ayrlla~~ 299 (741)
+..++.++.+.+.|-+. |+++- ..|..+-+-++.+.+.
T Consensus 141 ---~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 141 ---EELAEQAKLMESYGADC--VYVTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred ---HHHHHHHHHHHHcCCCE--EEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 33455667778888774 57784 4566555555555555
No 64
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=92.84 E-value=1.6 Score=48.56 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCC--------HHHHHHHHHHHHhhccCCcccceeecc-------------CCCH
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQG--------KREADACFEIKNSLVQKNYNIPLVADI-------------HFAP 172 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~--------~~~A~al~~I~~~L~~~~~~iPLVADI-------------HF~~ 172 (741)
|+......+.+.+++++|.+-|=+..++ .+....+.+|++.|.+.|..++.|+=- +-|+
T Consensus 28 ~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~ 107 (382)
T TIGR02631 28 TRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDR 107 (382)
T ss_pred CCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCH
Confidence 4444567788889999999999776322 233455889999999999998765521 2234
Q ss_pred ---HHHH----HHh----hh-cCceeeCCCCCCchhhhccccccc-hHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec
Q 004623 173 ---SVAL----RVA----EC-FDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (741)
Q Consensus 173 ---~lAl----~a~----~~-vdkiRINPGNig~~~k~f~~~~Yt-deey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 239 (741)
+.|+ .++ +. +..|-+.||-.|. .|+ ..+|.+.+++..+.+.++.+.|+++|.-|+|++=
T Consensus 108 ~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~--------~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLE 179 (382)
T TIGR02631 108 SVRRYALRKVLRNMDLGAELGAETYVVWGGREGA--------EYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALE 179 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCC--------cCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEc
Confidence 2222 222 23 7788999996654 133 2347888999999999999999998877788872
Q ss_pred cCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCc-eEEEE
Q 004623 240 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FLFSM 281 (741)
Q Consensus 240 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~d-iviS~ 281 (741)
. ++.+ +.+.-++.++-+.++++++.|-.+ +.+-+
T Consensus 180 p--~p~~------~~~~~ll~T~~~al~li~~v~~pn~vgl~l 214 (382)
T TIGR02631 180 P--KPNE------PRGDILLPTVGHALAFIETLERPELFGLNP 214 (382)
T ss_pred c--CCCC------CCcceecCCHHHHHHHHHHcCCccceeEEE
Confidence 2 1110 112235666666777778888766 45654
No 65
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=92.82 E-value=0.63 Score=51.10 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=48.8
Q ss_pred HHHHHHhhcccCc--c----eeecCC---CCccccccHHHHHHHHH----HHhc--CCC-CcEEEEeeeeecCCCCCCCC
Q 004623 627 FNLLQGCRMRNTK--T----EYVSCP---SCGRTLFDLQEISAEIR----EKTS--HLP-GVSIAIMGCIVNGPGEMADA 690 (741)
Q Consensus 627 ~~ILQa~rlR~~k--t----e~ISCP---sCGRTlfDLq~~~~~Ik----~~t~--hLk-gvkIAVMGCIVNGPGEmaDA 690 (741)
+..|+..++-... . +.++|| +|...++|-++++..+. ++.. .|| .+||+|-||..|- +...-+
T Consensus 83 ~~~L~~~Gl~~~~~G~~vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP~KfKI~vSGC~~~C-~~~~~~ 161 (341)
T TIGR02066 83 IDELEEVGFPVGGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCANMC-GGVHAS 161 (341)
T ss_pred HHHHHhccCCCCCCCCccccccccCcCCCCCCcchhchHHHHHHHHHHHHHHHhcccccccceeccccccccc-cchhhc
Confidence 4455655543321 1 578999 78888999988775444 4432 367 7899999999665 444579
Q ss_pred ceeeecC
Q 004623 691 DFGYVGG 697 (741)
Q Consensus 691 D~GyvGg 697 (741)
|+|++|.
T Consensus 162 Dig~~g~ 168 (341)
T TIGR02066 162 DIAIVGI 168 (341)
T ss_pred ccccccc
Confidence 9999984
No 66
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.34 E-value=16 Score=39.11 Aligned_cols=168 Identities=11% Similarity=0.153 Sum_probs=108.2
Q ss_pred eeEEEceeecCCCC----ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec------------CCHHHHHHHHHHH
Q 004623 89 RTVMVGNVAIGSEH----PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV------------QGKREADACFEIK 152 (741)
Q Consensus 89 r~V~VG~V~IGG~~----PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav------------p~~~~A~al~~I~ 152 (741)
..|.++++.+||+. |-+|.|- +-+.+-.+.+.++|..++|=.+ ++.+.-+.|.+.+
T Consensus 4 ~~~~~~~~~~~~~~~iaGPC~vEs~--------e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~ 75 (250)
T PRK13397 4 IMSDFQNKTCSKNNFIVGPCSIESY--------DHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVC 75 (250)
T ss_pred ceEEecCccCCCCcEEeccCccCCH--------HHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHH
Confidence 35788999888775 4455543 3344444558899999999654 3556666677777
Q ss_pred HhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCC
Q 004623 153 NSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 232 (741)
Q Consensus 153 ~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 232 (741)
++ ..+|+++|+|-...+.+ +.+.+|-+-|--+|+-+ .++++++.+.|+
T Consensus 76 ~~-----~Gl~~~Tev~d~~~v~~-~~e~vdilqIgs~~~~n--------------------------~~LL~~va~tgk 123 (250)
T PRK13397 76 QE-----FGLLSVSEIMSERQLEE-AYDYLDVIQVGARNMQN--------------------------FEFLKTLSHIDK 123 (250)
T ss_pred HH-----cCCCEEEeeCCHHHHHH-HHhcCCEEEECcccccC--------------------------HHHHHHHHccCC
Confidence 65 78999999997665554 45579999999999955 348888888899
Q ss_pred eEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE-------ecCChhHHHHHHHHHHHHhhcCCC
Q 004623 233 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-------KASNPVVMVQAYRLLVAEMYVHGW 305 (741)
Q Consensus 233 ~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-------KaSnv~~~i~Ayrlla~~m~~~g~ 305 (741)
||=|=. |- +.|++.| +.|.|+ +.+.|-++|++== ...+-..-+.+...|.++ +
T Consensus 124 PVilk~--G~---------~~t~~e~-~~A~e~---i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~-----~ 183 (250)
T PRK13397 124 PILFKR--GL---------MATIEEY-LGALSY---LQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQK-----T 183 (250)
T ss_pred eEEEeC--CC---------CCCHHHH-HHHHHH---HHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHH-----h
Confidence 993322 20 1244333 344444 4466666766643 111102234555566666 6
Q ss_pred Ccccccccccc
Q 004623 306 DYPLHLGVTEA 316 (741)
Q Consensus 306 dyPLHLGVTEA 316 (741)
++|.=+|.|-+
T Consensus 184 ~lPVivd~SHs 194 (250)
T PRK13397 184 DLPIIVDVSHS 194 (250)
T ss_pred CCCeEECCCCC
Confidence 78877887866
No 67
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=92.27 E-value=3.5 Score=42.30 Aligned_cols=147 Identities=12% Similarity=0.134 Sum_probs=85.1
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcccceee-ccC------
Q 004623 105 RVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIH------ 169 (741)
Q Consensus 105 ~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~--------~A~al~~I~~~L~~~~~~iPLVA-DIH------ 169 (741)
-|++-+-....+.+. .+..++++|.+-|=+.+.+.. ....+.++++.|.+.|..++-++ +-|
T Consensus 6 g~~~~~~~~~~~~~e---~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~ 82 (284)
T PRK13210 6 GIYEKALPKHLSWEE---RLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFG 82 (284)
T ss_pred chhhhhcCCCCCHHH---HHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCC
Confidence 344444444445554 455667789988887754321 23457888889999999888653 333
Q ss_pred -CCH----------HHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 170 -FAP----------SVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 170 -F~~----------~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
.++ +-++++++. ++.||+.++...... ...+..+++.+.++++++.|+++|+. |
T Consensus 83 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv~--l 149 (284)
T PRK13210 83 SRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEE-----------KSEETRQRFIEGLAWAVEQAAAAQVM--L 149 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCccccccc-----------ccHHHHHHHHHHHHHHHHHHHHhCCE--E
Confidence 232 233344443 888888433211100 01234577778888899999999964 4
Q ss_pred ee-ccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE
Q 004623 237 GT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 237 Gv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 281 (741)
++ |++. ..+.+.-+.+++++..+-.++.+-+
T Consensus 150 ~lE~~~~--------------~~~~~~~~~~~l~~~v~~~~~~~~~ 181 (284)
T PRK13210 150 AVEIMDT--------------PFMNSISKWKKWDKEIDSPWLTVYP 181 (284)
T ss_pred EEEecCc--------------cccCCHHHHHHHHHHcCCCceeEEe
Confidence 65 3321 1233334455666666666665554
No 68
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.17 E-value=1.2 Score=51.31 Aligned_cols=100 Identities=12% Similarity=0.237 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCc-ccceeeccCCCHHHHHHHhhh-cCceee--CCCC
Q 004623 119 GTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FDKIRV--NPGN 191 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvav---p~~~~A~al~~I~~~L~~~~~-~iPLVADIHF~~~lAl~a~~~-vdkiRI--NPGN 191 (741)
...+.+.+|.++|+++|=|.. .+....+.+++||+. + ++||+|=-=.++.-|..++++ +|.|++ -||-
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~-----~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN-----YPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh-----CCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 458999999999999999998 555667788888885 4 599999444668888899998 999995 5884
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
+...+.. ...- .-. -..+.++.+.|+++|+|+
T Consensus 316 ~~~t~~~-~~~g---------~p~-~~ai~~~~~~~~~~~v~v 347 (495)
T PTZ00314 316 ICITQEV-CAVG---------RPQ-ASAVYHVARYARERGVPC 347 (495)
T ss_pred ccccchh-ccCC---------CCh-HHHHHHHHHHHhhcCCeE
Confidence 4321100 0000 000 124566888999999887
No 69
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.12 E-value=7.5 Score=43.41 Aligned_cols=177 Identities=18% Similarity=0.245 Sum_probs=113.6
Q ss_pred CceeEEE----ceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----------cC--CHHHHHHHHH
Q 004623 87 KTRTVMV----GNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----------VQ--GKREADACFE 150 (741)
Q Consensus 87 ~Tr~V~V----G~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva----------vp--~~~~A~al~~ 150 (741)
....|.| |++.|||++|+.|=.= ..+-.+-+..++-..+|.++|+.++|=. .+ +.+.-+.|.+
T Consensus 81 ~~~~v~v~~~~~~v~iGg~~~l~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~ 159 (352)
T PRK13396 81 EASEVVVPTPNGPVPFGENHPVVVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAA 159 (352)
T ss_pred CCceEEEecCcCCeEecCCCeEEEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHH
Confidence 3445766 7999999998433211 4556677888888899999999999933 22 3455566666
Q ss_pred HHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhc
Q 004623 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (741)
Q Consensus 151 I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~ 230 (741)
++++ ..+|++.++|-...+- .+.+.+|-+-|--+|+-+ .++++++-+.
T Consensus 160 ~~~e-----~Gl~~~tev~d~~~v~-~~~~~~d~lqIga~~~~n--------------------------~~LL~~va~t 207 (352)
T PRK13396 160 AREA-----TGLGIITEVMDAADLE-KIAEVADVIQVGARNMQN--------------------------FSLLKKVGAQ 207 (352)
T ss_pred HHHH-----cCCcEEEeeCCHHHHH-HHHhhCCeEEECcccccC--------------------------HHHHHHHHcc
Confidence 6664 7899999998755544 445679999999999965 2378888888
Q ss_pred CCeEEEeeccCCCcHHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCceEEEE------ec--CChhHHHHHHHHHHHHhh
Q 004623 231 GRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM------KA--SNPVVMVQAYRLLVAEMY 301 (741)
Q Consensus 231 g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~------Ka--Snv~~~i~Ayrlla~~m~ 301 (741)
|+||=+ ++=.. |++.+.. |.|+ +.+.|-++|++== .+ .+-..-+.+...|.++
T Consensus 208 ~kPVll------------k~G~~~t~ee~~~-A~e~---i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~-- 269 (352)
T PRK13396 208 DKPVLL------------KRGMAATIDEWLM-AAEY---ILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSL-- 269 (352)
T ss_pred CCeEEE------------eCCCCCCHHHHHH-HHHH---HHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHh--
Confidence 999833 32112 5544433 3333 4466666666532 11 2222235555566555
Q ss_pred cCCCCccccccccccC
Q 004623 302 VHGWDYPLHLGVTEAG 317 (741)
Q Consensus 302 ~~g~dyPLHLGVTEAG 317 (741)
+++|.=.=.|-|.
T Consensus 270 ---~~lPVi~DpsH~~ 282 (352)
T PRK13396 270 ---THLPIMIDPSHGT 282 (352)
T ss_pred ---hCCCEEECCcccC
Confidence 6777744445444
No 70
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.09 E-value=7.7 Score=41.03 Aligned_cols=160 Identities=12% Similarity=0.117 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCc-ccceee-------ccCCCHHHHH-HHhhh-
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNY-NIPLVA-------DIHFAPSVAL-RVAEC- 181 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~-~iPLVA-------DIHF~~~lAl-~a~~~- 181 (741)
....+.-++=+..|.++|.+.+-+..| +.++.+.++.+++. +. +.++++ ||.......+ .|+++
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g 91 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKL----KLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAG 91 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHc----CCCCcEEEEEecccccCCCccchHHHHHHHhCC
Confidence 345677777788899999999999765 56666667666653 21 233333 4443222233 35555
Q ss_pred cCceeeC-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHH
Q 004623 182 FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (741)
Q Consensus 182 vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVe 260 (741)
++.|||- |..=....+.| ....++.-+++.+.++.||++|..++++.= .+ ...+-.++ +
T Consensus 92 ~~~i~i~~~~sd~~~~~~~----------~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~--~~----~d~~~~~~----~ 151 (273)
T cd07941 92 TPVVTIFGKSWDLHVTEAL----------GTTLEENLAMIRDSVAYLKSHGREVIFDAE--HF----FDGYKANP----E 151 (273)
T ss_pred CCEEEEEEcCCHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHcCCeEEEeEE--ec----cccCCCCH----H
Confidence 8889863 32211101110 011233445677899999999988766421 11 11111123 4
Q ss_pred HHHHHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 261 SAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 261 SAle~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
-.++.++.+.+.|.+. |+++-| .|..+-+-++.+.+.
T Consensus 152 ~~~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 152 YALATLKAAAEAGADW--LVLCDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred HHHHHHHHHHhCCCCE--EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 4556677778889885 456633 455555555555544
No 71
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=92.08 E-value=1.6 Score=41.70 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=94.9
Q ss_pred HHHHHcCCCEEEEecCCHHHH----HHHHHHHHhhccCCcccceee-ccCCCH-------------------HHHHHHhh
Q 004623 125 MRIADQGADLVRITVQGKREA----DACFEIKNSLVQKNYNIPLVA-DIHFAP-------------------SVALRVAE 180 (741)
Q Consensus 125 ~~L~~aGceiVRvavp~~~~A----~al~~I~~~L~~~~~~iPLVA-DIHF~~-------------------~lAl~a~~ 180 (741)
..++++|++-|=+........ .-+.++++.+++.|..++-+. ..++.+ +-+++.++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 567889999998887776555 468888888888888744322 222111 11223333
Q ss_pred -h-cCceeeCCCC--CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCch
Q 004623 181 -C-FDKIRVNPGN--FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (741)
Q Consensus 181 -~-vdkiRINPGN--ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~ 256 (741)
. ++.+++.||. ..... ...+.++++.+.++++++.|+++|+.|-+=...+...... .+
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~-----~~-- 143 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPED-----------DTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETP-----FS-- 143 (213)
T ss_dssp HHTBSEEEEECTTESSSTTS-----------SHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEE-----SS--
T ss_pred HhCCCceeecCcccccccCC-----------CHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccch-----hh--
Confidence 3 8899999994 32211 2347788888999999999999997776654333332110 01
Q ss_pred HHHHHHHHHHHHHHHCCCCceEEEEecCChh----HHHHHHHHHHHH
Q 004623 257 GMVESAFEFARICRKLDFHNFLFSMKASNPV----VMVQAYRLLVAE 299 (741)
Q Consensus 257 amVeSAle~~~i~e~~~F~diviS~KaSnv~----~~i~Ayrlla~~ 299 (741)
+-+..++|++.+-.++.+.+=.++.. ...++.+.+..+
T Consensus 144 -----~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 144 -----VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR 185 (213)
T ss_dssp -----HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG
T ss_pred -----HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhhcc
Confidence 34567778888887788887444433 223444444444
No 72
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.82 E-value=6.8 Score=43.24 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceee-CC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP 189 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI-NP 189 (741)
.-..+.-++=+..|.++|.+.+=+..| +.++.+.++.|.+. +.+..+++=+--+.+-...|+++ ++.||| .|
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~----~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQE----GLNAEICSLARALKKDIDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhc----CCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEc
Confidence 345677778888999999999999765 45677777777764 45666776555555555566776 888997 24
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~ 269 (741)
-|=....++ +....+..-+++.+.++.||++|..++++.-..+ + .+++ -.++.++.+
T Consensus 94 ~Sd~~~~~~----------~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~-------r--~~~~----~l~~~~~~~ 150 (363)
T TIGR02090 94 TSPIHLKYK----------LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT-------R--TDID----FLIKVFKRA 150 (363)
T ss_pred CCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecC-------C--CCHH----HHHHHHHHH
Confidence 321111111 1111233345677899999999999988863221 1 2333 334455666
Q ss_pred HHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 270 RKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 270 e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
.+.|-+. |+++-| .|..+-+.++.+.+.
T Consensus 151 ~~~g~~~--i~l~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 151 EEAGADR--INIADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred HhCCCCE--EEEeCCCCccCHHHHHHHHHHHhcc
Confidence 7788875 455544 456555555555544
No 73
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=91.67 E-value=2.6 Score=45.37 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=80.7
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccC--CCHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH--FAPSVA 175 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIH--F~~~lA 175 (741)
+||..+=+|++-.+....+.+..++|+.++.+.|...+.+-+....+.+.+..|++.+ + ++.|..|-| |+..-|
T Consensus 111 lGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~~~~d~~~v~avr~~~---~-~~~l~vDaN~~w~~~~A 186 (321)
T PRK15129 111 IGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLDNHLISERMVAIRSAV---P-DATLIVDANESWRAEGL 186 (321)
T ss_pred cCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhC---C-CCeEEEECCCCCCHHHH
Confidence 6775443444433333456788999999999999999999885555677788888753 2 577888887 445555
Q ss_pred HHHhhhcCceee-------CCCCCCchhhhcc--ccccchHHH--HHHHHhH----------------HHhHHHHHHHHH
Q 004623 176 LRVAECFDKIRV-------NPGNFADRRAQFE--QLEYTDDEY--QKELQHI----------------EEVFSPLVEKCK 228 (741)
Q Consensus 176 l~a~~~vdkiRI-------NPGNig~~~k~f~--~~~Ytdeey--~~ele~I----------------~e~~~~vv~~ak 228 (741)
++.++.++...| .|.++..-. ... .-+..||+. ...+.++ -....++++.|+
T Consensus 187 ~~~~~~l~~~~i~~iEqP~~~~~~~~l~-~~~~~~pia~dEs~~~~~d~~~~~~~~d~v~~k~~~~GGi~~a~~i~~~a~ 265 (321)
T PRK15129 187 AARCQLLADLGVAMLEQPLPAQDDAALE-NFIHPLPICADESCHTRSSLKALKGRYEMVNIKLDKTGGLTEALALATEAR 265 (321)
T ss_pred HHHHHHHHhcCceEEECCCCCCcHHHHH-HhccCCCEecCCCCCCHHHHHHHHhhCCEEEeCchhhCCHHHHHHHHHHHH
Confidence 544444444332 344442211 111 112334431 0111111 113557888888
Q ss_pred hcCCeEEEeecc
Q 004623 229 KYGRAVRIGTNH 240 (741)
Q Consensus 229 e~g~~IRIGvN~ 240 (741)
++|+++=+|-..
T Consensus 266 ~~gi~~~~g~~~ 277 (321)
T PRK15129 266 AQGFALMLGCML 277 (321)
T ss_pred HcCCcEEEecch
Confidence 888888777643
No 74
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.55 E-value=7 Score=43.39 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH--HHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeC-C
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREA--DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-P 189 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A--~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN-P 189 (741)
.-.++.-++=+..|.++|.+.+=+..|...+. +.+..|.+. +.+..+++-..-..+-...|+++ ++.|||- |
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~----~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKL----GLNASILALNRAVKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhc----CCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEc
Confidence 34566777778889999999999999866544 477777663 55556666655545555556666 8888862 2
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~ 269 (741)
-+=...++ .+..-.+..-+++.+.++.||++|..++++.-.++- .++ +-.++.++.+
T Consensus 98 ~Sd~h~~~----------~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r---------~~~----~~l~~~~~~~ 154 (378)
T PRK11858 98 TSDIHIKH----------KLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR---------TDL----DFLIEFAKAA 154 (378)
T ss_pred CCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC---------CCH----HHHHHHHHHH
Confidence 22111011 111223455566778999999999999887322211 122 3445566667
Q ss_pred HHCCCCceEEE--EecCChhHHHHHHHHHHHH
Q 004623 270 RKLDFHNFLFS--MKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 270 e~~~F~diviS--~KaSnv~~~i~Ayrlla~~ 299 (741)
.+.|-+.|.|. +=...|..+-+..+.+.+.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 77787754432 1123455555555555555
No 75
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=91.40 E-value=0.61 Score=54.56 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=63.2
Q ss_pred eeecCCCCcc---ccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCCCCCceeeecCC--Cc-------e
Q 004623 641 EYVSCPSCGR---TLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA--PG-------K 701 (741)
Q Consensus 641 e~ISCPsCGR---TlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg~--pG-------k 701 (741)
+.++||..|. .+||.+.+++++.+.+ ..|| -.||||-||..|- ....-.|+|++... .| .
T Consensus 190 NV~~~P~ag~~~~e~~D~~~~a~~l~~~~~~~~~~~~LPrKfkiaisg~~~~~-~~~~~nDigf~a~~~~~g~~~~~g~g 268 (593)
T PRK09567 190 NVTGSPTAGIDPQELLDTRPYAREWHHHILNDRSLYGLPRKFNVAFDGGGRIA-TLEDTNDIGFQAVRVLEGAGVAPGVY 268 (593)
T ss_pred CcCCCCCCCCChhhccchHHHHHHHHHHHhCCchhcCCCCCeEEEEECCCccc-ccccccceeeEEEEecCCccccccce
Confidence 6789997665 5799999999998775 2588 7899999997654 44446899998631 12 3
Q ss_pred eEeeecce--------eeeecCChhHHHHHHHH---HHHhcc
Q 004623 702 IDLYVGKT--------VVKRGIAMEQATDALIQ---LIKDHG 732 (741)
Q Consensus 702 i~LY~gke--------~V~r~Ipeeeavd~Li~---lIk~~g 732 (741)
+.+|.|+- .+..-|+.|++++-... .-+++|
T Consensus 269 f~v~vGG~~g~~~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G 310 (593)
T PRK09567 269 FRLVLGGITGHKDFARDTGVLLRPEEATAVADAIVRVFIENG 310 (593)
T ss_pred EEEEEecccCCCcchhhhhccCCHHHHHHHHHHHHHHHHHhC
Confidence 77887652 22323788888875444 445666
No 76
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.21 E-value=2.6 Score=43.22 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCEEEEec-------CCHHHHHHHHHHHHhhccCCcccceeeccC----CC-----HH---H------
Q 004623 120 TVEEVMRIADQGADLVRITV-------QGKREADACFEIKNSLVQKNYNIPLVADIH----FA-----PS---V------ 174 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvav-------p~~~~A~al~~I~~~L~~~~~~iPLVADIH----F~-----~~---l------ 174 (741)
..+.+..++++|-+-|=+.. ++. ....++++++.+.+.|..+..+.-.| |+ .. .
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~-~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDL-KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcccccccc-CchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 34455566677777666542 121 23456777888888888766554222 11 11 1
Q ss_pred -HHH-Hhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec-cCCCcHHHHhh
Q 004623 175 -ALR-VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSY 250 (741)
Q Consensus 175 -Al~-a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN-~GSL~~~il~~ 250 (741)
+++ |... +..|++.||..+... .+.+..+++.+.++++.+.|+++|+ ||++= ++--.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv--~l~iE~~~~~~------ 154 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYLT-----------PPNVIWGRLAENLSELCEYAENIGM--DLILEPLTPYE------ 154 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHcCC--EEEEecCCCCc------
Confidence 112 3333 889999999764311 1344556777888999999999986 55652 22111
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCC
Q 004623 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 285 (741)
Q Consensus 251 yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSn 285 (741)
...+.++-+.+++++..+-.++.+-+-..+
T Consensus 155 -----~~~~~t~~~~~~l~~~~~~~~v~~~~D~~h 184 (275)
T PRK09856 155 -----SNVVCNANDVLHALALVPSPRLFSMVDICA 184 (275)
T ss_pred -----ccccCCHHHHHHHHHHcCCCcceeEEeecc
Confidence 122445566777788877767766665554
No 77
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=90.83 E-value=3.1 Score=46.99 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecCCH-----HHHHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhh--hcCc
Q 004623 115 KDVAGTVEEVMRIADQ--GADLVRITVQGK-----READACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~a--GceiVRvavp~~-----~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdk 184 (741)
-|.+.+++-+.+|+++ +..+ .+-=|=. +.-+.+.+++++++++|+++||++|=.. ++.-+...++ ++|-
T Consensus 245 ~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~ 323 (408)
T TIGR01502 245 VDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHM 323 (408)
T ss_pred CCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCE
Confidence 4777888888888875 3354 7764442 3478899999999899999999999764 4666666665 4999
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee--ccCCC
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT--NHGSL 243 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv--N~GSL 243 (741)
|.|-+...|.-. ...++++.|+++|+++=+|- |.+++
T Consensus 324 v~iK~~k~GGIt----------------------~a~kia~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 324 VQIKTPDVGGVN----------------------NIARAIMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred EEeCccccCCHH----------------------HHHHHHHHHHHcCCEEEEeCCCCCCHH
Confidence 999999999844 35779999999999998874 34444
No 78
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.73 E-value=13 Score=37.71 Aligned_cols=109 Identities=11% Similarity=0.132 Sum_probs=71.7
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceee--ccCCC------
Q 004623 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA--DIHFA------ 171 (741)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVA--DIHF~------ 171 (741)
++--|+-|.-...+.+|-....+-.+++.++|+..+.+ .+. +.++.|++. .++|+++ =-||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~~~---~~~~~i~~~-----~~iPil~~~~~~~~~~~~~i 78 (219)
T cd04729 9 GGLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--NGV---EDIRAIRAR-----VDLPIIGLIKRDYPDSEVYI 78 (219)
T ss_pred CCeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--CCH---HHHHHHHHh-----CCCCEEEEEecCCCCCCcee
Confidence 34457888888888999999999999999999998775 444 566666663 6799985 12332
Q ss_pred ---HHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC-CeEEEee
Q 004623 172 ---PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGT 238 (741)
Q Consensus 172 ---~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g-~~IRIGv 238 (741)
...+..|+++ ++-|=++-.+..... .+...++++.+++++ +++-.++
T Consensus 79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~--------------------~~~~~~~i~~~~~~g~~~iiv~v 130 (219)
T cd04729 79 TPTIEEVDALAAAGADIIALDATDRPRPD--------------------GETLAELIKRIHEEYNCLLMADI 130 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCC--------------------CcCHHHHHHHHHHHhCCeEEEEC
Confidence 1244556665 776766533332111 013567888888888 6665443
No 79
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=90.67 E-value=2.3 Score=44.11 Aligned_cols=110 Identities=15% Similarity=0.280 Sum_probs=79.0
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl 176 (741)
+|.+.+++|=- | ..-+.+.+++-+++|++.|.+.+=--++. .+.+.+.++++. +++|+.+|=++ ++.-+.
T Consensus 126 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEeP~~~-~d~~~~~~l~~~-----~~ipia~dE~~~~~~~~~ 196 (265)
T cd03315 126 VGDDAELRVDA--N-RGWTPKQAIRALRALEDLGLDYVEQPLPA-DDLEGRAALARA-----TDTPIMADESAFTPHDAF 196 (265)
T ss_pred cCCCCEEEEeC--C-CCcCHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhh-----CCCCEEECCCCCCHHHHH
Confidence 45555555432 2 22357778888888888888777544432 345677778875 88999999775 455565
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 177 ~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
..++ .+|-|.+-|...|.-. .+.++++.|+++|+++=+|.
T Consensus 197 ~~i~~~~~d~v~~k~~~~GGi~----------------------~~~~~~~~A~~~gi~~~~~~ 238 (265)
T cd03315 197 RELALGAADAVNIKTAKTGGLT----------------------KAQRVLAVAEALGLPVMVGS 238 (265)
T ss_pred HHHHhCCCCEEEEecccccCHH----------------------HHHHHHHHHHHcCCcEEecC
Confidence 6655 4999999999999843 36789999999999998773
No 80
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=90.60 E-value=7.7 Score=47.10 Aligned_cols=211 Identities=20% Similarity=0.270 Sum_probs=150.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvav--p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGN 191 (741)
.|.+.+++-.+.=.+.|++|+=|-+ ...+.-+...++...| ....++||+=|.-- +.+-..++++ -.|-=+|-=|
T Consensus 51 ~~y~~~l~iAr~Qv~~GA~ilDvn~d~~~~D~~~~m~~~l~~~-a~~~~vPlMIDSs~-~eviEagLk~~qGk~ivNSis 128 (842)
T COG1410 51 EDYDEALDVARQQVENGAQILDVNVDYVGRDGVADMVELLNLL-ANEPTVPLMIDSSE-WEVIEAGLKCAQGKCIVNSIN 128 (842)
T ss_pred ccHHHHHHHHHHHHhcCCEEEEeeccccccccHHHHHHHHHHh-ccCCCCceEEehhH-HHHHHHHHhhccCceeeeeee
Confidence 6889999999999999999998874 3445555566666643 33567999999753 3444455555 4455578777
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~ 271 (741)
+-++ +++|...++.||+||.++.++.+ ++. ..++|++-=++=|-+-..++++
T Consensus 129 ~eeg---------------------e~~f~~~~~LvkkYGaaVVvma~----DE~---GqA~t~eRK~eIakR~y~l~~~ 180 (842)
T COG1410 129 YEEG---------------------EERFEKVAELVKKYGAAVVVMTI----DEE---GQARTAERKFEIAKRAYILTEE 180 (842)
T ss_pred eccc---------------------HHHHHHHHHHHHHhCCcEEEEee----ccc---cccccHHHHHHHHHHHHHHHHh
Confidence 7553 35789999999999999999983 222 1125777777777777789999
Q ss_pred CCC--CceEEEEec-----------CChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHH-------HH
Q 004623 272 LDF--HNFLFSMKA-----------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIG-------IG 331 (741)
Q Consensus 272 ~~F--~diviS~Ka-----------Snv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IKSaiG-------IG 331 (741)
.|| +||+|-.=. .+...+|+|-|.+.+++. ..=.-+||..-.-+..|.++.++. |+
T Consensus 181 ~gfpp~dIIfDPnvf~iaTgiEEh~~~gvd~Ieair~Ik~~LP----~~~tt~GvSNvSFslrg~~Re~lnavFLy~~i~ 256 (842)
T COG1410 181 VGFPPEDIIFDPNVFPIATGIEEHRNYGVDTIEAIRRIKKELP----HVLTTLGLSNVSFGLRGAVREVLNSVFLYEAIS 256 (842)
T ss_pred cCCCchheeeccceeeeccchhhhhhhHHHHHHHHHHHHHhCc----cceeccccccccCCCChHHHHhhhHHHHHHHHh
Confidence 999 777764321 245678999999999831 344678999999999998888764 55
Q ss_pred HHhhcCCCceeEEecCCCCcccchHHHH
Q 004623 332 TLLQDGLGDTIRVSLTEPPEKEIDPCRR 359 (741)
Q Consensus 332 ~LL~~GIGDTIRVSLT~dP~~EV~v~~~ 359 (741)
.=|-.||=+..+.-+-+++..|.+-+.+
T Consensus 257 aGmD~aIVNa~kl~~yd~I~~elrea~e 284 (842)
T COG1410 257 AGLDMAIVNAGKLLIYDNITAELREAVE 284 (842)
T ss_pred cCCchhhccccchhhhhccCHHHHHHHH
Confidence 5566777777777777777777754433
No 81
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=90.60 E-value=15 Score=40.43 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeC-CC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-PG 190 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~--A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN-PG 190 (741)
..++..++=+..|.++|.+.+=+..|...+ .+.++.|.+. +-+..+++=..-+.+-...|+++ ++.|||- |-
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~----~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVAL----GLPARLMAWCRARDADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHc----CCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEcc
Confidence 556777778888999999999999886544 5677888764 22344444333445555556666 8888863 22
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e 270 (741)
+=....++ +..-.+..-+++.+.|+.||++|..++++.-.++- .++ +-.++.++.+.
T Consensus 96 Sd~~~~~~----------~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r---------~~~----~~l~~~~~~~~ 152 (365)
T TIGR02660 96 SDLQIEAK----------LRKDRAWVLERLARLVSFARDRGLFVSVGGEDASR---------ADP----DFLVELAEVAA 152 (365)
T ss_pred CHHHHHHH----------hCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCC---------CCH----HHHHHHHHHHH
Confidence 11010111 11223344555778999999999998876532221 123 33445555666
Q ss_pred HCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 271 KLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 271 ~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
+.|-+. |+++.| .|..+-+-.+.+.+.
T Consensus 153 ~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 153 EAGADR--FRFADTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred HcCcCE--EEEcccCCCCCHHHHHHHHHHHHHh
Confidence 777765 445544 444444444444443
No 82
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=90.43 E-value=2 Score=46.14 Aligned_cols=110 Identities=11% Similarity=0.114 Sum_probs=78.9
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl 176 (741)
+|.+.+++|=- | ..-+.+.+++-+++|++.|.+.+==-+|. .+.+.++.++++ +++|+++|=++ ++.-+.
T Consensus 186 ~g~~~~l~vDa--N-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~-~~~~~~~~l~~~-----~~ipi~~dE~~~~~~~~~ 256 (357)
T cd03316 186 VGPDVDLMVDA--N-GRWDLAEAIRLARALEEYDLFWFEEPVPP-DDLEGLARLRQA-----TSVPIAAGENLYTRWEFR 256 (357)
T ss_pred hCCCCEEEEEC--C-CCCCHHHHHHHHHHhCccCCCeEcCCCCc-cCHHHHHHHHHh-----CCCCEEeccccccHHHHH
Confidence 45666777621 2 23467777777788888887665333332 245667777775 78999999764 677777
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 177 ~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
.+++ .+|-|.|-|...|.-. ...++.+.|+++|+++=+|.
T Consensus 257 ~~i~~~~~d~v~~k~~~~GGi~----------------------~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 257 DLLEAGAVDIIQPDVTKVGGIT----------------------EAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeEeccC
Confidence 7776 4999999999999844 35789999999999986664
No 83
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.33 E-value=8.5 Score=42.80 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHHH-HHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCce
Q 004623 115 KDVAGTVEEVMRIADQGADLVRIT-------VQGKREA-DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKI 185 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRva-------vp~~~~A-~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdki 185 (741)
-.++.-++=+.+|.++|.+.+-++ +|.+.++ +.+..|++ +. +..++.++ . +.+=+..|+++ ++.|
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~-~~--~~~~~~l~--~-n~~die~A~~~g~~~v 138 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN-LE--GARFPVLT--P-NLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh-cc--CCceeEEc--C-CHHHHHHHHHcCcCEE
Confidence 456888888999999999999998 4544443 45667765 22 34455443 2 66666677777 8888
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee--ccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT--NHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 186 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv--N~GSL~~~il~~yg~t~~amVeSAl 263 (741)
.|-..- -+ .|.. ..+..-.+.+-+++.++|+.||++|..+|..+ -.|.- .+|.++ ++-.+
T Consensus 139 ~i~~s~-Sd---~h~~-----~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p------~~~r~~---~~~l~ 200 (347)
T PLN02746 139 AVFASA-SE---SFSK-----SNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP------IEGPVP---PSKVA 200 (347)
T ss_pred EEEEec-CH---HHHH-----HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC------ccCCCC---HHHHH
Confidence 875321 00 0000 01112234555667789999999999998444 33321 112222 44556
Q ss_pred HHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 264 EFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 264 e~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
+.++.+.+.|-+. |+++-+ +|..+.+-++.|.++
T Consensus 201 ~~~~~~~~~Gad~--I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 201 YVAKELYDMGCYE--ISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHcCCCE--EEecCCcCCcCHHHHHHHHHHHHHh
Confidence 6777788889885 455544 455555555555444
No 84
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.01 E-value=2.6 Score=45.67 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=89.4
Q ss_pred ceeecCCCCceEEEe-ccCCCCCCH-HHHHHHHHH-HHHcCCCEEEEecC--------------C-HHHHHHHHHHHHhh
Q 004623 94 GNVAIGSEHPIRVQT-MTTNDTKDV-AGTVEEVMR-IADQGADLVRITVQ--------------G-KREADACFEIKNSL 155 (741)
Q Consensus 94 G~V~IGG~~PI~VQS-Mt~t~T~Dv-~atv~Qi~~-L~~aGceiVRvavp--------------~-~~~A~al~~I~~~L 155 (741)
|++.|||+.|..|=. =+.-.+.|. -.+.+++++ ..++|+.++|=+.- + .+--+-|.+++++
T Consensus 7 ~~~~ig~~~~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~- 85 (281)
T PRK12457 7 PGITVGNDLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKAR- 85 (281)
T ss_pred CCeEEcCCCceEEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-
Confidence 458888887654322 122222222 333444554 35699999988533 3 5677888899986
Q ss_pred ccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE
Q 004623 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (741)
Q Consensus 156 ~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 235 (741)
+.+|+|.|||-...+ ..+++.+|=+-|--=|.-. ..++++|.+.|+||=
T Consensus 86 ----~GlpvvTeV~~~~~~-~~~ae~vDilQIgAr~~rn--------------------------tdLL~a~~~t~kpV~ 134 (281)
T PRK12457 86 ----FGVPVITDVHEVEQA-APVAEVADVLQVPAFLARQ--------------------------TDLVVAIAKTGKPVN 134 (281)
T ss_pred ----HCCceEEEeCCHHHH-HHHhhhCeEEeeCchhhch--------------------------HHHHHHHhccCCeEE
Confidence 999999999976554 4777889999997666622 358888888899882
Q ss_pred EeeccCCCcHHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCceEEE
Q 004623 236 IGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLFS 280 (741)
Q Consensus 236 IGvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~diviS 280 (741)
++| | -+|+.|.-+| +.+...|=++|++-
T Consensus 135 ------------lKr-Gqf~s~~e~~~aa----e~i~~~Gn~~vilc 164 (281)
T PRK12457 135 ------------IKK-PQFMSPTQMKHVV----SKCREAGNDRVILC 164 (281)
T ss_pred ------------ecC-CCcCCHHHHHHHH----HHHHHcCCCeEEEE
Confidence 222 4 4676665443 34455565666553
No 85
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=89.94 E-value=25 Score=36.11 Aligned_cols=204 Identities=14% Similarity=0.103 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceee----cc---CC-----C---------HHH
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA----DI---HF-----A---------PSV 174 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVA----DI---HF-----~---------~~l 174 (741)
|.+.+ +.+++++|-+-|=+..|.. ..+.++++.|.+.|..++..+ |. ++ . .+-
T Consensus 16 ~l~~~---l~~~a~~Gf~~VEl~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (258)
T PRK09997 16 DFLAR---FEKAAQCGFRGVEFMFPYD---YDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAA 89 (258)
T ss_pred CHHHH---HHHHHHhCCCEEEEcCCCC---CCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHH
Confidence 44444 5566777877777665543 246777777888888876532 21 10 0 122
Q ss_pred HHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee---ccCCCcHHHHh
Q 004623 175 ALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT---NHGSLSDRIMS 249 (741)
Q Consensus 175 Al~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv---N~GSL~~~il~ 249 (741)
+++.++. +..|++.+|..... +++++ ..+...+.+.++.+.|+++|+. |++ ||-..
T Consensus 90 ~i~~a~~lga~~i~~~~g~~~~~--------~~~~~---~~~~~~~~l~~l~~~a~~~Gv~--l~lE~~n~~~~------ 150 (258)
T PRK09997 90 AIRYARALGNKKINCLVGKTPAG--------FSSEQ---IHATLVENLRYAANMLMKEDIL--LLIEPINHFDI------ 150 (258)
T ss_pred HHHHHHHhCCCEEEECCCCCCCC--------CCHHH---HHHHHHHHHHHHHHHHHHcCCE--EEEEeCCCcCC------
Confidence 2233332 77889888865321 22222 2456667788899999999855 576 55111
Q ss_pred hcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhH----HHHHHHHHHHHhhcCCCCcccccccccc---CCCCCC
Q 004623 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV----MVQAYRLLVAEMYVHGWDYPLHLGVTEA---GEGEDG 322 (741)
Q Consensus 250 ~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~----~i~Ayrlla~~m~~~g~dyPLHLGVTEA---G~~~~G 322 (741)
+..++.++-+.++++++.+-.++.+-+=..+... ..++++.+.. +=.|+=+.+. +..-+|
T Consensus 151 -----~~~~~~~~~~~~~ll~~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~~~--------ri~~vHikD~~~~~~~G~G 217 (258)
T PRK09997 151 -----PGFHLTGTRQALKLIDDVGCCNLKIQYDIYHMQRMEGELTNTMTQWAD--------KIGHLQIADNPHRGEPGTG 217 (258)
T ss_pred -----CCCccCCHHHHHHHHHHhCCCCEEEEeEHHHhhhcCCcHHHHHHHhhC--------cccEEEeCCCCCCCCCCCC
Confidence 1113344555677888888888888885555432 2333333333 3234433332 222345
Q ss_pred chhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHH
Q 004623 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR 359 (741)
Q Consensus 323 ~IKSaiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~ 359 (741)
.|-=.-=+.+|-..|.--. +|+--+|.+-+..+.+
T Consensus 218 ~id~~~i~~aL~~~Gy~G~--~~~E~~p~~~~~~s~~ 252 (258)
T PRK09997 218 EINYDYLFKVIENSDYNGW--VGCEYKPQTTTEAGLR 252 (258)
T ss_pred cCCHHHHHHHHHHhCCCeE--EEEEEecCCCcHHHHH
Confidence 5554444445555453222 3444456555554433
No 86
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=89.91 E-value=10 Score=40.08 Aligned_cols=146 Identities=19% Similarity=0.174 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH-----------HHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhhh-
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE-----------ADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC- 181 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~-----------A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~~- 181 (741)
.+.+..++=+..|.++|-|+|=+..|...+ .+.++.|.+.. +.+.++-..++.+. +-.....|.++
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDS-KGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhh-ccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 345566666778999999999999776532 56777777642 23466666677774 44444455666
Q ss_pred cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHH
Q 004623 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (741)
Q Consensus 182 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeS 261 (741)
++-|||- + ... . -++..+.++.||++|..++++.-.-+ +-+++-+
T Consensus 96 v~~iri~---~--~~~-----------------~-~~~~~~~i~~ak~~G~~v~~~~~~a~---------~~~~~~~--- 140 (266)
T cd07944 96 VDMIRVA---F--HKH-----------------E-FDEALPLIKAIKEKGYEVFFNLMAIS---------GYSDEEL--- 140 (266)
T ss_pred cCEEEEe---c--ccc-----------------c-HHHHHHHHHHHHHCCCeEEEEEEeec---------CCCHHHH---
Confidence 8999984 1 110 1 23467799999999998887753322 1234333
Q ss_pred HHHHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 262 AFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 262 Ale~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
++.++.+.+.|-+. |+++-| +|..+-+-++.+.+.
T Consensus 141 -~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 141 -LELLELVNEIKPDV--FYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred -HHHHHHHHhCCCCE--EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 44666677778775 455544 566666666666554
No 87
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=89.86 E-value=11 Score=41.03 Aligned_cols=166 Identities=20% Similarity=0.251 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCC----CCCCc
Q 004623 121 VEEVMRIADQGADLVRITV-QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNP----GNFAD 194 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvav-p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINP----GNig~ 194 (741)
..++..|+++|||||=-|- +.. ..+-+..||++ +++|++||+- +..=|+.|++. +|-||--= ||+..
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP-~~~~~~~iK~~-----~~~l~MAD~s-tleEal~a~~~Gad~I~TTl~gyT~~~~~ 149 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP-ADEEHHIDKHK-----FKVPFVCGAR-NLGEALRRISEGAAMIRTKGEAGTGNVVE 149 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc-HHHHHHHHHHH-----cCCcEEccCC-CHHHHHHHHHCCCCEEEecCCCCCCcHHH
Confidence 8899999999999994322 222 45567777775 7999999996 46667788886 99998542 33110
Q ss_pred hh--------hhccccccchHH-HHHHHHhHHHhHHHHHHHHHhcCCeEE-EeeccCCCcHHHHhhcCCCchHHHHHHHH
Q 004623 195 RR--------AQFEQLEYTDDE-YQKELQHIEEVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (741)
Q Consensus 195 ~~--------k~f~~~~Ytdee-y~~ele~I~e~~~~vv~~ake~g~~IR-IGvN~GSL~~~il~~yg~t~~amVeSAle 264 (741)
-- .--...-||+++ |..- ....--|.-+-+.++..++|+= |. -|-+ .|| +
T Consensus 150 ~~~~~~~i~~~i~~~~gyt~~t~~~~~-~~~~~d~elLk~l~~~~~iPVV~iA--eGGI---------~Tp--------e 209 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSMSEEELYAVA-KEIQAPYELVKETAKLGRLPVVNFA--AGGV---------ATP--------A 209 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhh-cccCCCHHHHHHHHHhcCCCeEEEE--eCCC---------CCH--------H
Confidence 00 000123577666 3221 1112223333334444567762 12 2222 244 2
Q ss_pred HHHHHHHCCCCceEEE---EecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCC
Q 004623 265 FARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (741)
Q Consensus 265 ~~~i~e~~~F~diviS---~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~ 320 (741)
.++.+-+.|-+-+.+. +++.|+..+.+.++..-++ |+-|-- +.|+-+++
T Consensus 210 na~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~-----~~~~~~--~~e~~~~~ 261 (283)
T cd04727 210 DAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH-----YDDPEI--LAEVSEGL 261 (283)
T ss_pred HHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh-----cCCHHH--HHHHHccc
Confidence 4444556788887775 6778999999988887777 665543 34554433
No 88
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=89.82 E-value=4 Score=40.64 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcc-cceee-ccCCCHHHHHHHhhh-cCceeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVA-DIHFAPSVALRVAEC-FDKIRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~-iPLVA-DIHF~~~lAl~a~~~-vdkiRINPGN 191 (741)
.|.+..++-+..|.++|..+|.++..+....+.++.|+++ ++ +++-| .+|-+.++ -.|++. .+-| .=||.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~-----~~~~~iGag~v~~~~~~-~~a~~~Ga~~i-~~p~~ 85 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKE-----FPEALIGAGTVLTPEQA-DAAIAAGAQFI-VSPGL 85 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH-----CCCCEEEEEeCCCHHHH-HHHHHcCCCEE-EcCCC
Confidence 3578888889999999999999999999999999999996 54 55555 45544443 455554 5555 33432
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
. .++++.|++++.++=+|+
T Consensus 86 ~----------------------------~~~~~~~~~~~~~~i~gv 104 (190)
T cd00452 86 D----------------------------PEVVKAANRAGIPLLPGV 104 (190)
T ss_pred C----------------------------HHHHHHHHHcCCcEECCc
Confidence 1 358999999999998888
No 89
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=89.69 E-value=4.1 Score=42.05 Aligned_cols=139 Identities=13% Similarity=0.161 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcccceee-ccCC-------CH----------HH
Q 004623 121 VEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIHF-------AP----------SV 174 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~~~--------~A~al~~I~~~L~~~~~~iPLVA-DIHF-------~~----------~l 174 (741)
.+++..++++|-+-|=+.+.+.. ..+.+..|++.|.+.|..++-++ ..|. +. +-
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 103 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRK 103 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 34566677889888888765432 34568888888889999887654 3442 22 12
Q ss_pred HHHHhh-h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC
Q 004623 175 ALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (741)
Q Consensus 175 Al~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg 252 (741)
+++.++ . +..|++.++.... +.+..+..++..+.++++.+.|+++|+.|-|= |+++
T Consensus 104 ~i~~a~~lG~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE-~~~~---------- 161 (283)
T PRK13209 104 AIQLAQDLGIRVIQLAGYDVYY-----------EQANNETRRRFIDGLKESVELASRASVTLAFE-IMDT---------- 161 (283)
T ss_pred HHHHHHHcCCCEEEECCccccc-----------cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEe-ecCC----------
Confidence 333333 3 7888886543221 11123445677788999999999999765332 2211
Q ss_pred CCchHHHHHHHHHHHHHHHCCCCceEEEEecCC
Q 004623 253 DSPRGMVESAFEFARICRKLDFHNFLFSMKASN 285 (741)
Q Consensus 253 ~t~~amVeSAle~~~i~e~~~F~diviS~KaSn 285 (741)
.++.+.-+.++++++.+-.++.+.+=..|
T Consensus 162 ----~~~~~~~~~~~ll~~v~~~~lgl~~D~~h 190 (283)
T PRK13209 162 ----PFMNSISKALGYAHYLNSPWFQLYPDIGN 190 (283)
T ss_pred ----cccCCHHHHHHHHHHhCCCccceEeccch
Confidence 12223345666777777777777764333
No 90
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=89.47 E-value=7.5 Score=39.59 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeecc--C---------CCH----------H
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI--H---------FAP----------S 173 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADI--H---------F~~----------~ 173 (741)
.+++.+++++ +++|.+-|=+..|.. ....+|++.|.+.|..++.+..- + +++ +
T Consensus 14 ~~l~e~~~~~---~e~G~~~vEl~~~~~---~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 14 LPFLERFAAA---AQAGFTGVEYLFPYD---WDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred CCHHHHHHHH---HHcCCCEEEecCCcc---CCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHH
Confidence 3566655555 567888877776653 34667777777888887766421 1 111 1
Q ss_pred HHHHHh-hh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec-cCCCcHHHHhh
Q 004623 174 VALRVA-EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSY 250 (741)
Q Consensus 174 lAl~a~-~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN-~GSL~~~il~~ 250 (741)
-++..+ +. +..||+.+|-.-.. ..+++..+...+.++++++.|+++|+.| ++- +.-
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~~-----------~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~~~-------- 146 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPAG-----------VSPEEARATLVENLRYAADALDRIGLTL--LIEPINS-------- 146 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCC-----------CCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEECCc--------
Confidence 122223 33 78889988854211 1123445666778888999999999655 551 110
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh
Q 004623 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (741)
Q Consensus 251 yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 287 (741)
+ +.|..++.++-+.++++++.+-.++.+.+=.++..
T Consensus 147 ~-~~~~~~l~t~~~~~~li~~v~~~~~~i~~D~~h~~ 182 (254)
T TIGR03234 147 F-DMPGFFLTTTEQALAVIDDVGRENLKLQYDLYHMQ 182 (254)
T ss_pred c-cCCCChhcCHHHHHHHHHHhCCCCEeEeeehhhhh
Confidence 0 22334678888889999999988888888555543
No 91
>PRK09989 hypothetical protein; Provisional
Probab=89.23 E-value=6.8 Score=40.27 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceee----ccC-------CC----------HHHHHHHhh
Q 004623 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA----DIH-------FA----------PSVALRVAE 180 (741)
Q Consensus 122 ~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVA----DIH-------F~----------~~lAl~a~~ 180 (741)
+.+.+++++|-+-|=+..+.... ..++++.|.+.|..++.+. |+- .+ .+.+++.++
T Consensus 19 ~~l~~~~~~Gfd~VEl~~~~~~~---~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~ 95 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLFPYDYS---TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYAL 95 (258)
T ss_pred HHHHHHHHcCCCEEEECCcccCC---HHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHH
Confidence 56777788898888776554333 4567777888888877653 221 10 233333333
Q ss_pred -h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe-eccCCCcHHHHhhcCCCchH
Q 004623 181 -C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG-TNHGSLSDRIMSYYGDSPRG 257 (741)
Q Consensus 181 -~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG-vN~GSL~~~il~~yg~t~~a 257 (741)
. +..|++.||.+-... + ..+..+.+.+.++++.+.|+++|+.+.+= +|.+- . +.-
T Consensus 96 ~lg~~~v~v~~g~~~~~~--------~---~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~---------~--~~~ 153 (258)
T PRK09989 96 ALNCEQVHVMAGVVPAGE--------D---AERYRAVFIDNLRYAADRFAPHGKRILVEALSPGV---------K--PHY 153 (258)
T ss_pred HhCcCEEEECccCCCCCC--------C---HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCC---------C--CCC
Confidence 3 788999999763211 1 12345667788889999999999877652 22211 0 112
Q ss_pred HHHHHHHHHHHHHHCCCCceEEEE
Q 004623 258 MVESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 258 mVeSAle~~~i~e~~~F~diviS~ 281 (741)
++.+.-+..+++++.+-.++.+-+
T Consensus 154 ~~~~~~~~~~ll~~v~~~~v~l~l 177 (258)
T PRK09989 154 LFSSQYQALAIVEEVARDNVFIQL 177 (258)
T ss_pred ccCCHHHHHHHHHHcCCCCeEEEe
Confidence 344555667888888888888877
No 92
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=89.13 E-value=1.9 Score=43.90 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=45.7
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceee
Q 004623 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
++..|.+-.-....|-+.+...+.+.++...||||+|+++. +.++...+-....++.... ++|+||
T Consensus 112 ~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~-~~p~i~ 179 (225)
T cd00502 112 GNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLY-DIPLIA 179 (225)
T ss_pred CCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcC-CCCEEE
Confidence 34445554445555668888889999999999999999976 4566666666666554433 567754
No 93
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=88.34 E-value=9.1 Score=40.73 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHHHHH-HHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCc
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRIT-------VQGKREADA-CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDK 184 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRva-------vp~~~~A~a-l~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdk 184 (741)
.-.++.-++=++.|.++|.+.+-+. +|-+.+++. +..|.+ + .+..+-..+ -+.+=...|+++ ++.
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~-~--~~~~~~~~~---~~~~dv~~A~~~g~~~ 89 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR-R--PGVRYSALV---PNLRGAERALAAGVDE 89 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc-C--CCCEEEEEC---CCHHHHHHHHHcCcCE
Confidence 3456777788888999999999998 776655543 222222 1 133332222 144444456666 777
Q ss_pred eeeC-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec--cCCCcHHHHhhcC-CCchHHHH
Q 004623 185 IRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYG-DSPRGMVE 260 (741)
Q Consensus 185 iRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN--~GSL~~~il~~yg-~t~~amVe 260 (741)
|+|= |-+=....++ +..-.+.+.++..+.++.||++|.-+++.+- .|. + |+ .+ -.+
T Consensus 90 i~i~~~~Sd~~~~~~----------~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-~------~~~~~---~~~ 149 (274)
T cd07938 90 VAVFVSASETFSQKN----------INCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-P------YEGEV---PPE 149 (274)
T ss_pred EEEEEecCHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-C------CCCCC---CHH
Confidence 7752 3321111111 1122345566777899999999999987653 221 1 11 22 244
Q ss_pred HHHHHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 261 SAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 261 SAle~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
-.++.++.+.+.|-+.| +++-| .|..+-+-.+.|.++
T Consensus 150 ~~~~~~~~~~~~Ga~~i--~l~DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 150 RVAEVAERLLDLGCDEI--SLGDTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHHHHHHHcCCCEE--EECCCCCccCHHHHHHHHHHHHHH
Confidence 55667777788898754 45543 455544444555444
No 94
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=87.74 E-value=0.75 Score=47.33 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCcee
Q 004623 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR 186 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR 186 (741)
--|++.+.+|.++|||||=+-.-+..--+.+.++.+++++++ .+++||| -++.=|+.|.+. +|-|=
T Consensus 51 TPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADi-st~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 51 TPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADI-STLEEAINAAELGFDIIG 117 (192)
T ss_dssp S-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE--SSHHHHHHHHHTT-SEEE
T ss_pred CCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeec-CCHHHHHHHHHcCCCEEE
Confidence 467899999999999999887544432244444444444444 9999999 567888888886 87764
No 95
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=87.56 E-value=8 Score=42.16 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceee--CCCC
Q 004623 118 AGTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV--NPGN 191 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvav---p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI--NPGN 191 (741)
+.+.+++..|.++|+++|=|.+ ......+.+++||+. .-++|+++.-=.++..|..++++ +|-|.+ -||.
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~----~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK----YPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH----CCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCc
Confidence 4467889999999999988865 233445667777774 22499998444888999999998 999997 4765
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
+...... .+. . .-.-..+.++.+.|+++++||
T Consensus 169 ~~~t~~~----~g~------g-~p~~~~i~~v~~~~~~~~vpV 200 (325)
T cd00381 169 ICTTRIV----TGV------G-VPQATAVADVAAAARDYGVPV 200 (325)
T ss_pred Cccccee----CCC------C-CCHHHHHHHHHHHHhhcCCcE
Confidence 4321100 000 0 000123556777888888887
No 96
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=87.45 E-value=8.3 Score=39.93 Aligned_cols=142 Identities=13% Similarity=0.158 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHhhccC-Ccccceeecc-----CCCH----------HHHH
Q 004623 120 TVEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQK-NYNIPLVADI-----HFAP----------SVAL 176 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvavp~~-------~~A~al~~I~~~L~~~-~~~iPLVADI-----HF~~----------~lAl 176 (741)
.-+.+..++++|-+.|=+.+... ...+.+.++++.+.+. +..+.+.+.. |.++ +-++
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 91 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEI 91 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHH
Confidence 44566778889998886654221 1235666777776666 5555444432 3331 2233
Q ss_pred HHhh-h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCC
Q 004623 177 RVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS 254 (741)
Q Consensus 177 ~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t 254 (741)
+.+. . +..|++.||+.... ...+..+...+.++++++.|+++|+.+-|=. ++.-
T Consensus 92 ~~A~~lG~~~v~~~~g~~~~~------------~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn-~~~~----------- 147 (279)
T cd00019 92 ERCEELGIRLLVFHPGSYLGQ------------SKEEGLKRVIEALNELIDKAETKGVVIALET-MAGQ----------- 147 (279)
T ss_pred HHHHHcCCCEEEECCCCCCCC------------CHHHHHHHHHHHHHHHHHhccCCCCEEEEeC-CCCC-----------
Confidence 3333 3 88899999976421 1233446667788889999999987554432 2211
Q ss_pred chHHHHHHHHHHHHHHHCC-CCceEEEEecCC
Q 004623 255 PRGMVESAFEFARICRKLD-FHNFLFSMKASN 285 (741)
Q Consensus 255 ~~amVeSAle~~~i~e~~~-F~diviS~KaSn 285 (741)
...++.++-+..+++++.| -.++.+-+=..|
T Consensus 148 ~~~~~~t~~~~~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 148 GNEIGSSFEELKEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCCeEEEEEhhh
Confidence 1134556667788888888 777777774444
No 97
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.39 E-value=2.8 Score=44.02 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=44.0
Q ss_pred CceEEEeccC-CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcccceee
Q 004623 102 HPIRVQTMTT-NDTKDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 102 ~PI~VQSMt~-t~T~Dv~atv~Qi~~L~~aGceiVRvav--p~~~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
..|.+ |=.+ ..|-+.+...+.+.++.+.|||||++++ .+.+++..+-....++.+...+.|+||
T Consensus 136 ~kvI~-S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~ 202 (253)
T PRK02412 136 VKVVL-SYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLIT 202 (253)
T ss_pred CEEEE-eeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 33444 4443 4455555677888899999999999997 466777666666666555556788864
No 98
>PRK09389 (R)-citramalate synthase; Provisional
Probab=87.25 E-value=26 Score=40.49 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceee-CC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP 189 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI-NP 189 (741)
..+++.-++=++.|.++|.+.+=+..| +..+.+.++.|.+. +.+..+.+-..-..+-...|+++ ++.|+| .|
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~----~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~~ 95 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE----GLNAEICSFARAVKVDIDAALECDVDSVHLVVP 95 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc----CCCcEEEeecccCHHHHHHHHhCCcCEEEEEEc
Confidence 456777788888999999999999877 77888889888863 33455555443333334445555 776774 23
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~ 269 (741)
-+=-..+. -+....+.+-+.+.+.|+.||++|..++++.-.++- .+ .+-+++.++.+
T Consensus 96 ~Sd~h~~~----------~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r---------~~----~~~l~~~~~~~ 152 (488)
T PRK09389 96 TSDLHIEY----------KLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASR---------AD----LDFLKELYKAG 152 (488)
T ss_pred cCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCC---------CC----HHHHHHHHHHH
Confidence 22111111 122234455566777899999999988886532221 12 23344555556
Q ss_pred HHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 270 RKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 270 e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
.+.|-+. |.+..+ .|..+-+-.+.|.++
T Consensus 153 ~~~Ga~~--i~l~DTvG~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 153 IEAGADR--ICFCDTVGILTPEKTYELFKRLSEL 184 (488)
T ss_pred HhCCCCE--EEEecCCCCcCHHHHHHHHHHHHhh
Confidence 6677765 444544 455554444444443
No 99
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=87.16 E-value=0.79 Score=50.23 Aligned_cols=56 Identities=32% Similarity=0.617 Sum_probs=46.0
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHhc--CCC-CcEEEEeeeeecCCCCCCCCceeeecC
Q 004623 641 EYVSCPS---CGRTLFDLQEISAEIREKTS--HLP-GVSIAIMGCIVNGPGEMADADFGYVGG 697 (741)
Q Consensus 641 e~ISCPs---CGRTlfDLq~~~~~Ik~~t~--hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg 697 (741)
+..|||+ |.--++|-.+++++|.+... -+| -+||+|-||- |.=+-....|||++|-
T Consensus 103 ~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~~~~~P~KfKI~vsGCP-n~C~r~~~~DigivGv 164 (317)
T COG2221 103 AIVACPGPRTCETALYDTTELARRLEEEFLEVPVPYKFKIAVSGCP-NDCTRPQAHDIGIVGV 164 (317)
T ss_pred hhhcCcCcccccccccChHHHHHHHHHHhhcCCCCceEEEEeecCC-cccccccccceeEEEe
Confidence 6789986 99999999999999999986 456 6899999996 4444444559999995
No 100
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=87.12 E-value=3 Score=42.81 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcccceee
Q 004623 112 NDTKDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRvav--p~~~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
..|-+.+.-.+.+.++.+.|||||++++ .+.++...|-.+..++.+. .++|+||
T Consensus 129 ~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~-~~~p~i~ 184 (228)
T TIGR01093 129 QKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEH-ADVPLIT 184 (228)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhc-CCCCEEE
Confidence 5566667788899999999999999998 4677777777776665433 5678865
No 101
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.95 E-value=17 Score=34.68 Aligned_cols=130 Identities=14% Similarity=0.152 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCH---------HHHHHHhhh-cCce
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAP---------SVALRVAEC-FDKI 185 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~---------~lAl~a~~~-vdki 185 (741)
|.++..+.+..+.++|++-+.+.- +.++.+++... +.++|+++=+=.+- ..|..|.+. +|.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g------~~i~~~~~~~~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP------GYVRLAADALA--GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH------HHHHHHHHHhC--CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 899999999999999999887774 55555555422 22589887664432 445566665 7877
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHH
Q 004623 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (741)
Q Consensus 186 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~ 265 (741)
=+-| |++.... ...+.+.+.|+++.+.| +.++|+-|-.+-+.. .+++ .-.+.
T Consensus 83 ~v~~-~~~~~~~-------------~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~---------~~~~----~~~~~ 134 (201)
T cd00945 83 DVVI-NIGSLKE-------------GDWEEVLEEIAAVVEAA-DGGLPLKVILETRGL---------KTAD----EIAKA 134 (201)
T ss_pred EEec-cHHHHhC-------------CCHHHHHHHHHHHHHHh-cCCceEEEEEECCCC---------CCHH----HHHHH
Confidence 7644 2321100 00245566677788887 789999998875543 1232 22345
Q ss_pred HHHHHHCCCCceEEEE
Q 004623 266 ARICRKLDFHNFLFSM 281 (741)
Q Consensus 266 ~~i~e~~~F~diviS~ 281 (741)
++++++.|++=|+.|.
T Consensus 135 ~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 135 ARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHhCCCEEEeCC
Confidence 6777788998887765
No 102
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.93 E-value=5.5 Score=45.16 Aligned_cols=69 Identities=26% Similarity=0.392 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEec--C-CHHHHHHHHHHHHhhccCCc-ccceeeccCCCHHHHHHHhhh-cCceee--CCC
Q 004623 118 AGTVEEVMRIADQGADLVRITV--Q-GKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FDKIRV--NPG 190 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvav--p-~~~~A~al~~I~~~L~~~~~-~iPLVADIHF~~~lAl~a~~~-vdkiRI--NPG 190 (741)
..|.+.+..|.++|||+|=|-+ + +....+.+++||++ + ++|||+=.=-.+.-|..++++ +|.|++ -||
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~-----~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G 226 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTK-----YPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG 226 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhh-----CCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4588999999999999998544 3 45666778888885 6 488877444678999999997 999884 465
Q ss_pred C
Q 004623 191 N 191 (741)
Q Consensus 191 N 191 (741)
-
T Consensus 227 s 227 (404)
T PRK06843 227 S 227 (404)
T ss_pred c
Confidence 3
No 103
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=86.87 E-value=17 Score=39.71 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeC----CCCCCc
Q 004623 121 VEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFAD 194 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRva-vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN----PGNig~ 194 (741)
..++..|+++|+|+|=-| ++.. +.+-+..+|++ +++|+|||+- +..=|+.+++. +|-||=- -||+..
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~lrP-ade~~~~~K~~-----f~vpfmad~~-~l~EAlrai~~GadmI~Tt~e~gTg~v~~ 151 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVLTP-ADWTFHIDKKK-----FKVPFVCGAR-DLGEALRRINEGAAMIRTKGEAGTGNIVE 151 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCCCc-HHHHHHHHHHH-----cCCCEEccCC-CHHHHHHHHHCCCCEEeccccCCCccHHH
Confidence 889999999999999433 1222 45566677764 7999999996 45667777775 8888854 234211
Q ss_pred hhhhccccccc-----------hHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 195 RRAQFEQLEYT-----------DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 195 ~~k~f~~~~Yt-----------deey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAl 263 (741)
--+ .-.-|| |+|...--..+.--+.-+-+.++..++|+= -.--|-+ .||
T Consensus 152 av~--hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV-~fAiGGI---------~TP-------- 211 (287)
T TIGR00343 152 AVR--HMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVV-NFAAGGV---------ATP-------- 211 (287)
T ss_pred HHH--HHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEE-EeccCCC---------CCH--------
Confidence 000 001111 112111111112222223333333345651 0012222 244
Q ss_pred HHHHHHHHCCCCceEEE---EecCChhHHHHHHHHHHHHhhcCCCCccccc
Q 004623 264 EFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (741)
Q Consensus 264 e~~~i~e~~~F~diviS---~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHL 311 (741)
+.+..+-++|-+-+.+. +|+.|+..+.+++...... |+-|--|
T Consensus 212 edAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~~~~ 257 (287)
T TIGR00343 212 ADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH-----YDNPEKL 257 (287)
T ss_pred HHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH-----cCCHHHH
Confidence 24455556888887775 6888999999988887777 6666443
No 104
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=86.87 E-value=23 Score=39.02 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=116.0
Q ss_pred eEEEceeecCCCCceEEEeccCCC--CCC---HHHHHHHHHHHHHcCCCEEEE----------------ecCCHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTND--TKD---VAGTVEEVMRIADQGADLVRI----------------TVQGKREADAC 148 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~--T~D---v~atv~Qi~~L~~aGceiVRv----------------avp~~~~A~al 148 (741)
.++||++.+ -|-|+.-.|++.. +.| .+..++--.+.++-|+-+|=. ..-+.+....+
T Consensus 6 P~~ig~~~l--kNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~ 83 (337)
T PRK13523 6 PYTIKDVTL--KNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGL 83 (337)
T ss_pred CeeECCEee--ecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHH
Confidence 467777776 7888888886532 223 567777788888888888711 12366788999
Q ss_pred HHHHHhhccCCcccceeecc-CCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHH
Q 004623 149 FEIKNSLVQKNYNIPLVADI-HFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKC 227 (741)
Q Consensus 149 ~~I~~~L~~~~~~iPLVADI-HF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~a 227 (741)
+++.+.+++.|+. +++=+ |... .+. ....-+-|-.+............| .+|++.|.+.|..-.+.|
T Consensus 84 r~l~d~vh~~G~~--i~~QL~H~G~-~~~-----~~~~~~~ps~~~~~~~~~~p~~mt----~eeI~~ii~~f~~aA~~a 151 (337)
T PRK13523 84 HKLVTFIHDHGAK--AAIQLAHAGR-KAE-----LEGDIVAPSAIPFDEKSKTPVEMT----KEQIKETVLAFKQAAVRA 151 (337)
T ss_pred HHHHHHHHhcCCE--EEEEccCCCC-CCC-----CCCCccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHH
Confidence 9999999988864 45554 4432 210 011112333332211111112333 456778888888888888
Q ss_pred HhcCCeE-EEeeccCCCcHHH--------HhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh-----HHHHHH
Q 004623 228 KKYGRAV-RIGTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV-----VMVQAY 293 (741)
Q Consensus 228 ke~g~~I-RIGvN~GSL~~~i--------l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~-----~~i~Ay 293 (741)
++.|.-. =|=.-||-|-..+ -.+||.+.+.=..=++|-++-.++.= ++.|++|-|-.. .+.+-+
T Consensus 152 ~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~--~~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 152 KEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW--DGPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred HHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CCCeEEEecccccCCCCCCHHHH
Confidence 8877653 3333455444333 44577655544455555555444431 346777776311 134445
Q ss_pred HHHHHHhhcCCCCc
Q 004623 294 RLLVAEMYVHGWDY 307 (741)
Q Consensus 294 rlla~~m~~~g~dy 307 (741)
..+++.+++.|+||
T Consensus 230 ~~i~~~l~~~gvD~ 243 (337)
T PRK13523 230 VQYAKWMKEQGVDL 243 (337)
T ss_pred HHHHHHHHHcCCCE
Confidence 55666666667765
No 105
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=86.65 E-value=1 Score=50.72 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=43.0
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHhc------CCC-CcEEEEeeeeecCCCCCC-CCceeeecC
Q 004623 641 EYVSCPS---CGRTLFDLQEISAEIREKTS------HLP-GVSIAIMGCIVNGPGEMA-DADFGYVGG 697 (741)
Q Consensus 641 e~ISCPs---CGRTlfDLq~~~~~Ik~~t~------hLk-gvkIAVMGCIVNGPGEma-DAD~GyvGg 697 (741)
..++||+ |.--.+|-+.+..++.+.+. .+| .+||+|-||. |.=+..- -+|+|++|.
T Consensus 156 ti~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP~KfKI~vSGCp-n~C~~~~~~~DIG~iG~ 222 (402)
T TIGR02064 156 TPESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYKFKFKFSGCP-NDCVAAIARSDFAVIGT 222 (402)
T ss_pred ceecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCCccccccccccc-cccccceeccCceeecc
Confidence 4789996 55557788888877777653 366 6899999997 5556554 899999985
No 106
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=86.53 E-value=25 Score=37.81 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHH-HHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCce
Q 004623 115 KDVAGTVEEVMRIADQGADLVRIT-------VQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKI 185 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRva-------vp~~~~-A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdki 185 (741)
-.++..++=+..|.++|.+.+=+. +|.+.+ .+.+..|.+. .+..+...+---.+++. |+++ ++.|
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~---~~~~~~~l~~~~~~ie~---A~~~g~~~v 96 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR---PGVTYAALTPNLKGLEA---ALAAGADEV 96 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc---CCCeEEEEecCHHHHHH---HHHcCCCEE
Confidence 456777778888999999999997 776554 3455555541 23333333322333444 4455 8888
Q ss_pred eeC-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeecc--CCCcHHHHhhcCCCchHHHHHH
Q 004623 186 RVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH--GSLSDRIMSYYGDSPRGMVESA 262 (741)
Q Consensus 186 RIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~--GSL~~~il~~yg~t~~amVeSA 262 (741)
+|= |-+=.... ..+..-.+..-+++.+.|+.||++|..++..+-. |.- ..|.++ .+-.
T Consensus 97 ~i~~~~s~~~~~----------~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~~---~~~~ 157 (287)
T PRK05692 97 AVFASASEAFSQ----------KNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEVP---PEAV 157 (287)
T ss_pred EEEEecCHHHHH----------HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCCC---HHHH
Confidence 863 11000000 0011123344456788999999999999865532 221 011222 2444
Q ss_pred HHHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 263 FEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 263 le~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
++.++.+.+.|-+ .|++|-| +|..+.+-++.|.++
T Consensus 158 ~~~~~~~~~~G~d--~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 158 ADVAERLFALGCY--EISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHHHHHHHHcCCc--EEEeccccCccCHHHHHHHHHHHHHh
Confidence 5667777888887 4666655 455555555555444
No 107
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=86.12 E-value=5.1 Score=42.61 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhh--hcCceeeCCCCCC
Q 004623 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFA 193 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig 193 (741)
.+..++-.++|++.|.+.+==-++ ..+-+.++++++. +++|+.+|=+. ++.-+...++ .+|-|.+.|..+|
T Consensus 190 ~~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~L~~~-----~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~G 263 (316)
T cd03319 190 PEEAVELLRELAELGVELIEQPVP-AGDDDGLAYLRDK-----SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTG 263 (316)
T ss_pred HHHHHHHHHHHHhcCCCEEECCCC-CCCHHHHHHHHhc-----CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccC
Confidence 344455555666666555532222 2344556666664 78999999774 4555556666 4999999999998
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
+-. ...++...|+++|+++=+|
T Consensus 264 Gi~----------------------~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 264 GLT----------------------EALRIADLARAAGLKVMVG 285 (316)
T ss_pred CHH----------------------HHHHHHHHHHHcCCCEEEE
Confidence 844 4688999999999999776
No 108
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=86.02 E-value=28 Score=40.65 Aligned_cols=160 Identities=12% Similarity=0.078 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCc-ccceee-------ccCCCHHHHHHHh-hh-
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNY-NIPLVA-------DIHFAPSVALRVA-EC- 181 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~-~iPLVA-------DIHF~~~lAl~a~-~~- 181 (741)
..+.+.-++=+..|.++|.+.|=+..| +..+.++++.|.+. +. +..+++ |+......+++++ ++
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~----~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g 98 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKEL----KLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAG 98 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHh----CCCCcEEEEEeeccccCCCcccHHHHHHHHhCC
Confidence 456677888888999999999999765 45677778878762 11 233333 5543333344444 44
Q ss_pred cCceeeC-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHH
Q 004623 182 FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (741)
Q Consensus 182 vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVe 260 (741)
++-|+|- |-+=-..+++ +....+.+-+.+.+.|+.||++|..++.+.-|-+ |....=.+
T Consensus 99 ~~~i~i~~~~Sd~h~~~~----------l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~----------Da~r~d~~ 158 (524)
T PRK12344 99 TPVVTIFGKSWDLHVTEA----------LRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFF----------DGYKANPE 158 (524)
T ss_pred CCEEEEEECCCHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccc----------ccccCCHH
Confidence 7777763 3211011111 1222345566788899999999998887653111 00001123
Q ss_pred HHHHHHHHHHHCCCCceEEEEec----CChhHHHHHHHHHHHH
Q 004623 261 SAFEFARICRKLDFHNFLFSMKA----SNPVVMVQAYRLLVAE 299 (741)
Q Consensus 261 SAle~~~i~e~~~F~diviS~Ka----Snv~~~i~Ayrlla~~ 299 (741)
-+++.++.+.+.|-+.|. ++. ..|..+-+-.+.|.+.
T Consensus 159 ~l~~~~~~~~~~Gad~i~--l~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 159 YALATLKAAAEAGADWVV--LCDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred HHHHHHHHHHhCCCCeEE--EccCCCCcCHHHHHHHHHHHHHh
Confidence 445555666677777654 442 2455555555555544
No 109
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.95 E-value=1.3 Score=50.73 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCEEEE--------ecC-----CHHHHHHHHHHHHhhccCCcccceeeccC--CCHHHHHHHhhh-c
Q 004623 119 GTVEEVMRIADQGADLVRI--------TVQ-----GKREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAEC-F 182 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRv--------avp-----~~~~A~al~~I~~~L~~~~~~iPLVADIH--F~~~lAl~a~~~-v 182 (741)
+|.++.+.|.+||||.||| |+. +.-...++.++.+..+ ...+|+|||-+ +...++ +|+.+ +
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~--~~~~~via~ggi~~~~~~~-~al~~ga 353 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAR--ELGAHVWADGGVRHPRDVA-LALAAGA 353 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHH--hcCCcEEecCCCCCHHHHH-HHHHcCC
Confidence 4677778889999999993 211 2234555555555322 26799999954 444443 45554 6
Q ss_pred Cceee
Q 004623 183 DKIRV 187 (741)
Q Consensus 183 dkiRI 187 (741)
+.+=+
T Consensus 354 ~~v~~ 358 (479)
T PRK07807 354 SNVMI 358 (479)
T ss_pred Ceeec
Confidence 66544
No 110
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=85.92 E-value=53 Score=35.41 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHcC-----CCEEEEecCCHHHHHHHHHHHHhhccCCcccc-eeeccCCCHHHHHHHhhh-cCceeeC
Q 004623 116 DVAGTVEEVMRIADQG-----ADLVRITVQGKREADACFEIKNSLVQKNYNIP-LVADIHFAPSVALRVAEC-FDKIRVN 188 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aG-----ceiVRvavp~~~~A~al~~I~~~L~~~~~~iP-LVADIHF~~~lAl~a~~~-vdkiRIN 188 (741)
.++.-++=++.|.++| .+-+=+..-..++++++..+.++ +...| +.+=.==+.+=...|+++ ++.|-|-
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~~d~~~v~~~~~~----~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~ 94 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTEKDREAVEACLDR----GYKFPEVTGWIRANKEDLKLVKEMGLKETGIL 94 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEecCcChHHHHHHHHHHHc----CCCCCEEEEEecCCHHHHHHHHHcCcCEEEEE
Confidence 7788888899999999 77776766677888888887763 22112 222011122222344554 6666541
Q ss_pred -CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCc-hHHHHHHHHHH
Q 004623 189 -PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP-RGMVESAFEFA 266 (741)
Q Consensus 189 -PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~-~amVeSAle~~ 266 (741)
|-+= .|. ...+..-.+.+-+++.++|+.||++|..+|+++ .|.-.. .+ ...++=+.+.+
T Consensus 95 ~s~S~-----~~~-----~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~--------d~~~~v~~~~~~~~ 155 (279)
T cd07947 95 MSVSD-----YHI-----FKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRA--------DIYGFVLPFVNKLM 155 (279)
T ss_pred EcCCH-----HHH-----HHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCC--------CcccchHHHHHHHH
Confidence 1110 011 112334456677788899999999999999998 111110 11 33445556666
Q ss_pred HHHHHCCCCceEEEEecC
Q 004623 267 RICRKLDFHNFLFSMKAS 284 (741)
Q Consensus 267 ~i~e~~~F~diviS~KaS 284 (741)
+.+.+.|-+ +.|+++-|
T Consensus 156 ~~~~~~G~~-~~i~l~DT 172 (279)
T cd07947 156 KLSKESGIP-VKIRLCDT 172 (279)
T ss_pred HHHHHCCCC-EEEEeccC
Confidence 777777754 35666654
No 111
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=85.74 E-value=4.5 Score=46.85 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHH---HHHHHHHHhhccCCcc-cceee-ccCCCHHHHHHHhhh-cCceeeC--CC
Q 004623 119 GTVEEVMRIADQGADLVRITVQGKREA---DACFEIKNSLVQKNYN-IPLVA-DIHFAPSVALRVAEC-FDKIRVN--PG 190 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp~~~~A---~al~~I~~~L~~~~~~-iPLVA-DIHF~~~lAl~a~~~-vdkiRIN--PG 190 (741)
...+.+.+|.+||||+|=+-+++-... +.+++||+. ++ ++||+ || -.+.-|..|+++ +|.|++- ||
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~-----~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g~G 321 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKT-----YPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMGSG 321 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHh-----CCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCCCC
Confidence 346899999999999999988765444 467777774 54 89975 88 457889999998 9999874 77
Q ss_pred CCCc
Q 004623 191 NFAD 194 (741)
Q Consensus 191 Nig~ 194 (741)
-+..
T Consensus 322 ~~~~ 325 (505)
T PLN02274 322 SICT 325 (505)
T ss_pred cccc
Confidence 5544
No 112
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.98 E-value=26 Score=38.04 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=110.0
Q ss_pred eEEEce-eecCCCCceEEEeccCCC-CCC---HHHHHHHHHHHHHcCCCEEEEe----------cC---------CHHHH
Q 004623 90 TVMVGN-VAIGSEHPIRVQTMTTND-TKD---VAGTVEEVMRIADQGADLVRIT----------VQ---------GKREA 145 (741)
Q Consensus 90 ~V~VG~-V~IGG~~PI~VQSMt~t~-T~D---v~atv~Qi~~L~~aGceiVRva----------vp---------~~~~A 145 (741)
.+++|+ +.+ -|-|....|++.. +.| .+..++-..+.++.|+-+|=+. .| +.+..
T Consensus 4 P~~i~~~~~l--kNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i 81 (338)
T cd04733 4 PLTLPNGATL--PNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDL 81 (338)
T ss_pred CeEcCCCcEE--cccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHH
Confidence 456664 666 6788899997533 244 6777888888888888887211 13 56789
Q ss_pred HHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchh---hhc-cccccchHHHHHHHHhHHHhHH
Q 004623 146 DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR---AQF-EQLEYTDDEYQKELQHIEEVFS 221 (741)
Q Consensus 146 ~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~---k~f-~~~~Ytdeey~~ele~I~e~~~ 221 (741)
..++++.+..++.|+. +++=++.-.+.+-.. ....-+-|..+-... ..+ ...+.| .+|+++|.+.|.
T Consensus 82 ~~~~~l~~~vh~~G~~--~~~Ql~h~G~~~~~~---~~~~~~~ps~~~~~~~~~~~~~~p~~mt----~~eI~~~i~~~~ 152 (338)
T cd04733 82 EAFREWAAAAKANGAL--IWAQLNHPGRQSPAG---LNQNPVAPSVALDPGGLGKLFGKPRAMT----EEEIEDVIDRFA 152 (338)
T ss_pred HHHHHHHHHHHhcCCE--EEEEccCCCcCCCcc---CCCCCcCCCCCcCcccccccCCCCCcCC----HHHHHHHHHHHH
Confidence 9999999999998874 455544433332110 111112222211100 000 012233 466777778888
Q ss_pred HHHHHHHhcCC-eEEEeeccCCCcHHHHh--------hcCCCchHHHHHHHHHHHHHHH-CCCCceEEEEecC
Q 004623 222 PLVEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKAS 284 (741)
Q Consensus 222 ~vv~~ake~g~-~IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~-~~F~diviS~KaS 284 (741)
+-.+.|++.|- -|=|=.-||.|-..+++ +||.+.+.=..-.+|-++-.++ .| +++.|++|.|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris 224 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLN 224 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEc
Confidence 88888888887 45454456666555444 5776666556666666665554 34 6789999987
No 113
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.89 E-value=29 Score=36.96 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=116.4
Q ss_pred eEEEceeecCCCCceEEEeccCCCC-CC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDT-KD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADAC 148 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T-~D---v~atv~Qi~~L~~aGceiVRva-----------------vp~~~~A~al 148 (741)
.+++|++.+ -|-|+.-.|++... .| .+..++--.+.++-|+-+| ++ .-+.+..+++
T Consensus 3 p~~i~~~~l--~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~gli-i~e~~~v~~~~~~~~~~~~~~~~~~~~~~ 79 (327)
T cd02803 3 PIKIGGLTL--KNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLI-ITEAAYVDPEGKGYPGQLGIYDDEQIPGL 79 (327)
T ss_pred CcccCCEee--ccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEE-EECcEEEcCcccCCCCCcCcCCHHHHHHH
Confidence 355666665 67888889976544 24 5666777777888787777 22 2356789999
Q ss_pred HHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHH
Q 004623 149 FEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (741)
Q Consensus 149 ~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ak 228 (741)
+++.+..++.|+.+ ++=++..-+.+...... ..=+-|..+..........+.| .+|++.|.+.|..-.+.|+
T Consensus 80 ~~~~~~vh~~g~~~--~~Ql~h~G~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~mt----~~ei~~~i~~~~~aA~~a~ 151 (327)
T cd02803 80 RKLTEAVHAHGAKI--FAQLAHAGRQAQPNLTG--GPPPAPSAIPSPGGGEPPREMT----KEEIEQIIEDFAAAARRAK 151 (327)
T ss_pred HHHHHHHHhCCCHh--hHHhhCCCcCCCCcCCC--CCccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHHH
Confidence 99999998888653 32222111111000000 0001121111100000112223 3456677777777777777
Q ss_pred hcCCe-EEEeeccCCCcHHH--------HhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh-----HHHHHHH
Q 004623 229 KYGRA-VRIGTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV-----VMVQAYR 294 (741)
Q Consensus 229 e~g~~-IRIGvN~GSL~~~i--------l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~-----~~i~Ayr 294 (741)
+.|.- |=|=..||-|-..+ -.+||.+.+.-..-.+|-++-.++.==.++.|++|-|-.. .+.+-..
T Consensus 152 ~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~ 231 (327)
T cd02803 152 EAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAI 231 (327)
T ss_pred HcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHH
Confidence 76653 33444566653333 3468866666666666777766653115789999988211 1234445
Q ss_pred HHHHHhhcCCCCccccc
Q 004623 295 LLVAEMYVHGWDYPLHL 311 (741)
Q Consensus 295 lla~~m~~~g~dyPLHL 311 (741)
.+++++.+.|.|| +|+
T Consensus 232 ~la~~l~~~G~d~-i~v 247 (327)
T cd02803 232 EIAKALEEAGVDA-LHV 247 (327)
T ss_pred HHHHHHHHcCCCE-EEe
Confidence 5666666667764 443
No 114
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.55 E-value=40 Score=36.20 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHH-HHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCc--cccee--eccCCCHHHHHHHhhh-cCcee
Q 004623 115 KDVAGTVEEVMRI-ADQGADLVRITVQ--GKREADACFEIKNSLVQKNY--NIPLV--ADIHFAPSVALRVAEC-FDKIR 186 (741)
Q Consensus 115 ~Dv~atv~Qi~~L-~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~--~iPLV--ADIHF~~~lAl~a~~~-vdkiR 186 (741)
-.++.-++=++.| .++|.+.+=+..| +.++.+++++|.+.-...+. ++-++ +|. .+-+..|.++ ++.|+
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~A~~~g~~~i~ 92 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDG---DKSVDWIKSAGAKVLN 92 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCc---HHHHHHHHHCCCCEEE
Confidence 3456667777786 6669999999988 88889999999863211111 12222 233 2333344555 78887
Q ss_pred eCC-CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHH
Q 004623 187 VNP-GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (741)
Q Consensus 187 INP-GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~ 265 (741)
|-- ..=.... +.+..-.+..-+++.++++.||++|..++++.-. . -.-|-.+|+ -.++.
T Consensus 93 i~~~~S~~h~~----------~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d--~----~~~~r~~~~----~~~~~ 152 (280)
T cd07945 93 LLTKGSLKHCT----------EQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED--W----SNGMRDSPD----YVFQL 152 (280)
T ss_pred EEEeCCHHHHH----------HHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe--C----CCCCcCCHH----HHHHH
Confidence 642 1100001 1111233555566888999999999999988732 1 001111333 34456
Q ss_pred HHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHH
Q 004623 266 ARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVA 298 (741)
Q Consensus 266 ~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~ 298 (741)
++.+.+.|-+. |+++-| +|..+.+-.+.+.+
T Consensus 153 ~~~~~~~G~~~--i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 153 VDFLSDLPIKR--IMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHcCCCE--EEecCCCCCCCHHHHHHHHHHHHh
Confidence 66677788874 566654 45544444444443
No 115
>TIGR00035 asp_race aspartate racemase.
Probab=83.97 E-value=18 Score=37.14 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCccccee
Q 004623 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV 165 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLV 165 (741)
....+-+++|+++|||.+=+++++.... +.+|+++ +++|++
T Consensus 62 ~~l~~~~~~L~~~g~d~iviaCNTah~~--~~~l~~~-----~~iPii 102 (229)
T TIGR00035 62 PILIDIAVKLENAGADFIIMPCNTAHKF--AEDIQKA-----IGIPLI 102 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccHHHH--HHHHHHh-----CCCCEe
Confidence 4567778899999999999999996654 6778775 789986
No 116
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=82.81 E-value=3.8 Score=41.59 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=44.8
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceee
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
+..|.+-.---..|-+.+...+.+.++.+.|||||++++. +.++...|-.+.+++++. .+.|+|+
T Consensus 113 ~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~-~~~p~i~ 179 (224)
T PF01487_consen 113 GTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREE-PDIPVIA 179 (224)
T ss_dssp TSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHH-TSSEEEE
T ss_pred CCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhc-cCCcEEE
Confidence 3444443333344556666888899999999999999865 678888888888877766 6788876
No 117
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=82.78 E-value=58 Score=33.03 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=105.3
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCccccee---e-c-----cCC
Q 004623 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV---A-D-----IHF 170 (741)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLV---A-D-----IHF 170 (741)
|+--|+-|.--.++-++.+..++-...+.++|+--+++.. -+.+.+|++. .++|++ . | +..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~~-----~~~i~~i~~~-----~~~Pil~~~~~d~~~~~~~~ 74 (221)
T PRK01130 5 GGLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRANG-----VEDIKAIRAV-----VDVPIIGIIKRDYPDSEVYI 74 (221)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcCC-----HHHHHHHHHh-----CCCCEEEEEecCCCCCCceE
Confidence 4445778888778888888888899999999999999853 4677777774 678986 2 2 311
Q ss_pred C--HHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHh-cCCeEEEeeccCCCcHH
Q 004623 171 A--PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIGTNHGSLSDR 246 (741)
Q Consensus 171 ~--~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake-~g~~IRIGvN~GSL~~~ 246 (741)
. .+-+.+|.++ +|-|=+.-.+.-... .+...++++.|++ .++++ .+...
T Consensus 75 ~~~~~~v~~a~~aGad~I~~d~~~~~~p~--------------------~~~~~~~i~~~~~~~~i~v--i~~v~----- 127 (221)
T PRK01130 75 TPTLKEVDALAAAGADIIALDATLRPRPD--------------------GETLAELVKRIKEYPGQLL--MADCS----- 127 (221)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCC--------------------CCCHHHHHHHHHhCCCCeE--EEeCC-----
Confidence 1 2345666676 775544211110000 0125678999999 67765 43221
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEec------CChhHHHHHHHHHHHHhhcCCCCccccccccccCCCC
Q 004623 247 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (741)
Q Consensus 247 il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~Ka------Snv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~ 320 (741)
++ +.++.+++.|++=++++.-. ..........+.+.+. ++-|+- .
T Consensus 128 -------t~--------ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-----~~iPvi---------a 178 (221)
T PRK01130 128 -------TL--------EEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-----VGCPVI---------A 178 (221)
T ss_pred -------CH--------HHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-----CCCCEE---------E
Confidence 11 22356778898766653210 1112234555566555 455642 3
Q ss_pred CCchhhHHHHHHHhhcCCCceeEE
Q 004623 321 DGRMKSAIGIGTLLQDGLGDTIRV 344 (741)
Q Consensus 321 ~G~IKSaiGIG~LL~~GIGDTIRV 344 (741)
.|-|++.--+-.++..| -|-+-+
T Consensus 179 ~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 179 EGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred ECCCCCHHHHHHHHHCC-CCEEEE
Confidence 45666666666677666 455444
No 118
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.57 E-value=37 Score=37.87 Aligned_cols=212 Identities=15% Similarity=0.187 Sum_probs=122.7
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEEEEe---c--------------CCHHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLVRIT---V--------------QGKREADACF 149 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiVRva---v--------------p~~~~A~al~ 149 (741)
.++||++.+ -|-|+.-.|++....| .+..++--.+.++-|+-+|=+- | -+.+....++
T Consensus 4 Pl~ig~~~l--kNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~ 81 (361)
T cd04747 4 PFTLKGLTL--PNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWK 81 (361)
T ss_pred CeeECCEEe--eCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHH
Confidence 466777766 6777777886544434 4666777777887776665111 1 1456789999
Q ss_pred HHHHhhccCCcccceeeccCCCHHHHHHHhhhcCce-eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHH
Q 004623 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (741)
Q Consensus 150 ~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ak 228 (741)
+|.+.+++.|+. +++=++...+.+........+. -+.|..+-..... .....| .+|++.|.+.|..-.+.|+
T Consensus 82 ~l~d~vh~~Ga~--i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~-~p~~mt----~~eI~~ii~~f~~AA~~a~ 154 (361)
T cd04747 82 KVVDEVHAAGGK--IAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKP-VGREMT----EADIDDVIAAFARAAADAR 154 (361)
T ss_pred HHHHHHHhcCCE--EEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCC-CCccCC----HHHHHHHHHHHHHHHHHHH
Confidence 999999998874 5555433333322110000011 1455554321110 012233 4566777777887888888
Q ss_pred hcCCe-EEEeeccCCCcHHHH--------hhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCCh--h-------HHH
Q 004623 229 KYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP--V-------VMV 290 (741)
Q Consensus 229 e~g~~-IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv--~-------~~i 290 (741)
+.|-- |=|=.-||-|=..+| .+||.+.+.=..=++|-++-.++.==.|+.|.+|-|-- . .+.
T Consensus 155 ~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~ 234 (361)
T cd04747 155 RLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTP 234 (361)
T ss_pred HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCH
Confidence 87654 334445665544444 45886666556666666766666422567888888720 0 122
Q ss_pred HHHHHHHHHhhcCCCCccccc
Q 004623 291 QAYRLLVAEMYVHGWDYPLHL 311 (741)
Q Consensus 291 ~Ayrlla~~m~~~g~dyPLHL 311 (741)
+-...+++.+++.|+|| +|+
T Consensus 235 ~e~~~~~~~l~~~gvd~-i~v 254 (361)
T cd04747 235 DELEALLAPLVDAGVDI-FHC 254 (361)
T ss_pred HHHHHHHHHHHHcCCCE-EEe
Confidence 33345555666778899 886
No 119
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=82.15 E-value=5.5 Score=41.77 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=51.2
Q ss_pred eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCE--EEEecCCHHHHHHHHHHHHhhccCCcccceee
Q 004623 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADL--VRITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 89 r~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGcei--VRvavp~~~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
..+.|+++.||++.|..+=|.+-++ .+....|+.++...|||+ +|+-.=+..+...+.++-+.+++ .+.|+|.
T Consensus 7 ~~~~v~~~~~g~~~p~Icvpi~~~~---~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~--~~~p~I~ 81 (229)
T PRK01261 7 DKISIGKFVIGNMQPIVVESIFFKD---IKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNE--MDIDYIF 81 (229)
T ss_pred CeEEEeCeEeCCCCcEEEEEeCCCC---HHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhh--cCCCEEE
Confidence 3578999999999999999888765 455666777888899999 56653333333333444443333 3789887
Q ss_pred cc
Q 004623 167 DI 168 (741)
Q Consensus 167 DI 168 (741)
=+
T Consensus 82 T~ 83 (229)
T PRK01261 82 TY 83 (229)
T ss_pred EE
Confidence 54
No 120
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=82.13 E-value=9.2 Score=42.73 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecC---CHHHHHHHHHHHHhhccCCcc-cceeeccCCCHHHHHHHhhh-cCcee--eCCCC
Q 004623 119 GTVEEVMRIADQGADLVRITVQ---GKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIR--VNPGN 191 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp---~~~~A~al~~I~~~L~~~~~~-iPLVADIHF~~~lAl~a~~~-vdkiR--INPGN 191 (741)
...+.+..|.+||+|++=|-+. +....+.+++||+. ++ +|+||====.+..|+.-+++ +|.|| |-||-
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~-----~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGs 182 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK-----FPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGS 182 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH-----STTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSST
T ss_pred HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh-----CCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCc
Confidence 3477888899999999988644 44556677777775 54 99999877778888888887 99999 56776
Q ss_pred CCc-------hhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 192 FAD-------RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 192 ig~-------~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
+=- +..+ -..+.++.++|+++++||
T Consensus 183 iCtTr~v~GvG~PQ------------------~tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 183 ICTTREVTGVGVPQ------------------LTAVYECAEAARDYGVPI 214 (352)
T ss_dssp TBHHHHHHSBSCTH------------------HHHHHHHHHHHHCTTSEE
T ss_pred ccccccccccCCcH------------------HHHHHHHHHHhhhccCce
Confidence 632 1111 114667888899999998
No 121
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=81.48 E-value=1.2 Score=31.63 Aligned_cols=18 Identities=44% Similarity=1.088 Sum_probs=13.2
Q ss_pred eeecCCCCccccccHHHHH
Q 004623 641 EYVSCPSCGRTLFDLQEIS 659 (741)
Q Consensus 641 e~ISCPsCGRTlfDLq~~~ 659 (741)
+.+.||.|||+ |....+.
T Consensus 1 ~l~~C~~CgR~-F~~~~l~ 18 (25)
T PF13913_consen 1 ELVPCPICGRK-FNPDRLE 18 (25)
T ss_pred CCCcCCCCCCE-ECHHHHH
Confidence 45789999999 7654443
No 122
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.04 E-value=4.3 Score=41.05 Aligned_cols=71 Identities=28% Similarity=0.424 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 004623 120 TVEEVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvavp~~~--~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNi 192 (741)
+.+|+..+.++|+++|=+-.+... ..+.+.++.+.+++.+ ++|++.+.| ++.-|..+.+. ++-|-+|+..+
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~-t~~ea~~a~~~G~d~i~~~~~g~ 154 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS-TLEEALNAAKLGFDIIGTTLSGY 154 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC-CHHHHHHHHHcCCCEEEccCccc
Confidence 567999999999998877543311 1113333444444446 799999987 56777777776 88888776544
No 123
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=81.02 E-value=90 Score=34.36 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=116.5
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADACF 149 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiVRva-----------------vp~~~~A~al~ 149 (741)
.++||++.+ -|-|+.-.|+.....| .+..++-..+.++.|+-+| ++ .-+.+...+++
T Consensus 4 P~~i~~~~l--kNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlI-i~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 4 PLQLGHLTL--RNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLI-ITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CeeeCCEEe--cCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEE-EEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 466777766 6788888886555444 6788888889999888776 32 11556789999
Q ss_pred HHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHh
Q 004623 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (741)
Q Consensus 150 ~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake 229 (741)
++.+..++.|+ ++++=++...+.+.... ....-+-|..+..........+.| .+|++.|.+.|..-.+.|++
T Consensus 81 ~l~~~vh~~g~--~~~~Ql~H~G~~~~~~~--~~~~~~~ps~~~~~~~~~~~~~mt----~~eI~~ii~~f~~AA~ra~~ 152 (343)
T cd04734 81 RLAEAVHAHGA--VIMIQLTHLGRRGDGDG--SWLPPLAPSAVPEPRHRAVPKAME----EEDIEEIIAAFADAARRCQA 152 (343)
T ss_pred HHHHHHHhcCC--eEEEeccCCCcCcCccc--CCCcccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 99999998876 56666554433332100 001112333321110000112233 34566677777777777777
Q ss_pred cCC-eEEEeeccCCCcHHHHh--------hcCCCchHHHHHHHHHHHHHHHC-CCCceEEEEecCChhH-----HHHHHH
Q 004623 230 YGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKL-DFHNFLFSMKASNPVV-----MVQAYR 294 (741)
Q Consensus 230 ~g~-~IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~~-~F~diviS~KaSnv~~-----~i~Ayr 294 (741)
.|- -|=|=.-||-|=..+|+ +||...+.=..-++|-++-.++. | .++.|.+|-|-... +.+-..
T Consensus 153 aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg-~~~~v~iRl~~~~~~~~G~~~~e~~ 231 (343)
T cd04734 153 GGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG-PDFIVGIRISGDEDTEGGLSPDEAL 231 (343)
T ss_pred cCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC-CCCeEEEEeehhhccCCCCCHHHHH
Confidence 776 45455555876333332 38866655445555555555543 4 56677777663221 122233
Q ss_pred HHHHHhhcCC-CCc
Q 004623 295 LLVAEMYVHG-WDY 307 (741)
Q Consensus 295 lla~~m~~~g-~dy 307 (741)
.|++.+++.| .||
T Consensus 232 ~~~~~l~~~G~vd~ 245 (343)
T cd04734 232 EIAARLAAEGLIDY 245 (343)
T ss_pred HHHHHHHhcCCCCE
Confidence 5566666666 565
No 124
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=80.95 E-value=14 Score=37.53 Aligned_cols=110 Identities=13% Similarity=0.215 Sum_probs=72.0
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHH
Q 004623 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 177 (741)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 177 (741)
|.+-.+++=- | ..-|.+.+++=+++|++.+.+.+===+|. ++-+.+++++++ +++|+.+|=++. +.-...
T Consensus 92 g~~~~l~lDa--N-~~~~~~~a~~~~~~l~~~~i~~iEeP~~~-~d~~~~~~L~~~-----~~~pIa~dEs~~~~~~~~~ 162 (229)
T cd00308 92 GPDARLAVDA--N-GAWTPKEAIRLIRALEKYGLAWIEEPCAP-DDLEGYAALRRR-----TGIPIAADESVTTVDDALE 162 (229)
T ss_pred CCCCeEEEEC--C-CCCCHHHHHHHHHHhhhcCCCeEECCCCc-cCHHHHHHHHhh-----CCCCEEeCCCCCCHHHHHH
Confidence 4455554432 2 23456666666777777666555421221 234566677764 889999998765 333334
Q ss_pred Hhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec
Q 004623 178 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (741)
Q Consensus 178 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 239 (741)
.++ .++-+.|-|..+|.-. ...++++.|+++|+++=+|..
T Consensus 163 ~~~~~~~d~~~~k~~~~GGi~----------------------~~~~i~~~a~~~gi~~~~~~~ 204 (229)
T cd00308 163 ALELGAVDILQIKPTRVGGLT----------------------ESRRAADLAEAFGIRVMVHGT 204 (229)
T ss_pred HHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCEEeecCC
Confidence 444 4999999999998743 367899999999999977654
No 125
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=80.66 E-value=4.4 Score=43.18 Aligned_cols=191 Identities=16% Similarity=0.208 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-CH-----HHHHHHHHHHHhhccCCccccee----eccCCCHHHHHHHhhh--cC
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQ-GK-----READACFEIKNSLVQKNYNIPLV----ADIHFAPSVALRVAEC--FD 183 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp-~~-----~~A~al~~I~~~L~~~~~~iPLV----ADIHF~~~lAl~a~~~--vd 183 (741)
-.+..+++..++.+||+-+|-+-+- +. -+++.+.++.+.++++..++++= +-..+++.-=++.++. -|
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~pd 103 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWKPD 103 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH--S
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcCCC
Confidence 4688899999999999999999988 43 35566677777777666666654 3356665333334433 55
Q ss_pred ceeeCCC--CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHH
Q 004623 184 KIRVNPG--NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (741)
Q Consensus 184 kiRINPG--Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeS 261 (741)
-.=+|+| |++..+..|.+- .+.+.++++.++++|+..=|++ | + -++++.
T Consensus 104 ~asl~~gs~n~~~~~~~~~n~--------------~~~~~~~~~~~~e~Gi~pe~ev------------~--d-~~~l~~ 154 (272)
T PF05853_consen 104 MASLNPGSMNFGTRDRVYINT--------------PADARELARRMRERGIKPEIEV------------F--D-PGHLRN 154 (272)
T ss_dssp EEEEE-S-EEESGGCSEE-----------------HHHHHHHHHHHHHTT-EEEEEE------------S--S-HHHHHH
T ss_pred eEEecccccccccCCceecCC--------------HHHHHHHHHHHHHcCCeEEEEE------------E--c-HHHHHH
Confidence 5778888 444111112211 2345668999999999999988 2 1 244444
Q ss_pred HHHHHHHHHHCCC------CceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHHHHHhh
Q 004623 262 AFEFARICRKLDF------HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQ 335 (741)
Q Consensus 262 Ale~~~i~e~~~F------~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IKSaiGIG~LL~ 335 (741)
+.. +.+.|. -++++..... .+-+.+.+..+...+.. ..++.|+=.|...--....|+..|.=..
T Consensus 155 ~~~----l~~~G~l~~p~~~~~vlG~~~g-~~~~~~~l~~~l~~l~~-----~~~w~v~~~g~~~~~~~~~Ai~~GghvR 224 (272)
T PF05853_consen 155 ARR----LIEKGLLPGPLLVNFVLGVPGG-MPATPENLLAMLDMLPE-----GAPWSVCGIGRNQWPLLAAAIAMGGHVR 224 (272)
T ss_dssp HHH----HHHTTSS-SSEEEEEEES-TTS---S-HHHHHHHHHHHHH-----TEEEEEEE-GGGHHHHHHHHHHTT-EEE
T ss_pred HHH----HHHCCCCCCCeEEEEcccCCCC-CCCCHHHHHHHHHhcCC-----CCcEEEEccchhhHHHHHHHHHcCCceE
Confidence 433 333344 3455544431 22334444444444332 3444555444444444555565555556
Q ss_pred cCCCceeEEe
Q 004623 336 DGLGDTIRVS 345 (741)
Q Consensus 336 ~GIGDTIRVS 345 (741)
=|+.|++...
T Consensus 225 VGlED~~~~~ 234 (272)
T PF05853_consen 225 VGLEDNLYLP 234 (272)
T ss_dssp ESTTT-SEEE
T ss_pred EecCccccCC
Confidence 6777777663
No 126
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=80.36 E-value=7.3 Score=44.02 Aligned_cols=152 Identities=15% Similarity=0.197 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHH----------cCCCEEEE--ecCC--HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh
Q 004623 116 DVAGTVEEVMRIAD----------QGADLVRI--TVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (741)
Q Consensus 116 Dv~atv~Qi~~L~~----------aGceiVRv--avp~--~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 181 (741)
.+++-++.++.+.. .|+|+|-+ +..| .+.|+..+++.+ .+++|||=--- |+.++-+|++.
T Consensus 44 ~~~~~~~~~~~v~~dwak~rVge~~~~D~Ialr~~S~DPae~fa~~vk~V~~-----a~~~PLIL~~~-D~evl~aale~ 117 (386)
T PF03599_consen 44 EIEAKVERIKDVQFDWAKKRVGEFLGADMIALRLESGDPAEEFAKAVKKVAE-----AVDVPLILCGC-DPEVLKAALEA 117 (386)
T ss_dssp HHHHHHHHHTTTCCEHHHHCCCEEEE-SEEEEE-GGGSTHHHHHHHHHHHHH-----C-SSEEEEESS-HHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhccccEEEEEecCCChHHHHHHHHHHHHH-----hcCCCEEEEeC-CHHHHHHHHHH
Confidence 35677777776543 47888655 4555 455566666655 38899876433 99999999997
Q ss_pred cCcee--eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHH
Q 004623 182 FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (741)
Q Consensus 182 vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amV 259 (741)
+..=| |.+=|- ++++++.+.|+++|.|+ ++ +++.+ +
T Consensus 118 ~~~~kpLL~aAt~-------------------------eNyk~m~~lA~~y~~pl--~v-~sp~D--------------l 155 (386)
T PF03599_consen 118 CAGKKPLLYAATE-------------------------ENYKAMAALAKEYGHPL--IV-SSPID--------------L 155 (386)
T ss_dssp TTTS--EEEEEBT-------------------------TTHHHHHHHHHHCT-EE--EE-E-SSC--------------H
T ss_pred hCcCCcEEeEcCH-------------------------HHHHHHHHHHHHcCCeE--EE-Eeccc--------------H
Confidence 55333 433222 24577999999999997 66 33332 2
Q ss_pred HHHHHHHHHHHHCCCCceEEEEecCC----hhHH---HHHHHHHHHHhhcCCCCcccccccccc
Q 004623 260 ESAFEFARICRKLDFHNFLFSMKASN----PVVM---VQAYRLLVAEMYVHGWDYPLHLGVTEA 316 (741)
Q Consensus 260 eSAle~~~i~e~~~F~diviS~KaSn----v~~~---i~Ayrlla~~m~~~g~dyPLHLGVTEA 316 (741)
+.+-+-.+.|.++|++|||+--=+.. ...+ ...-|+.|=+- .+-+-||.=-..+||
T Consensus 156 n~lk~Ln~~l~~~Gv~dIVlDpgt~~lGyGie~t~s~~~rIRraALk~-Dr~lgyPiI~~~~~a 218 (386)
T PF03599_consen 156 NLLKQLNIKLTELGVKDIVLDPGTRALGYGIEYTYSNMERIRRAALKG-DRPLGYPIITFPTEA 218 (386)
T ss_dssp HHHHHHHHHHHTTT-GGEEEE---SSTTTTHHHHHHHHHHHHHHHHHT--GGG-S-BEECHHHC
T ss_pred HHHHHHHHHHHhcCcccEEecCCcccchhHHHHHHHHHHHHHHHHhcc-CcccCCceeecchhc
Confidence 34455677889999999999764444 3222 22334444332 333568864333443
No 127
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=80.19 E-value=12 Score=35.12 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=52.7
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHH-------HHHHHHHhhccCCcccceeeccCCCHHH------
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREAD-------ACFEIKNSLVQKNYNIPLVADIHFAPSV------ 174 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~-------al~~I~~~L~~~~~~iPLVADIHF~~~l------ 174 (741)
||+++.- +...++++.+.+.|+++|-+-..+..... .+..+++. .++|+++++=.+...
T Consensus 5 ~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 76 (200)
T cd04722 5 LLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-----TDLPLGVQLAINDAAAAVDIA 76 (200)
T ss_pred ccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-----cCCcEEEEEccCCchhhhhHH
Confidence 5666654 78899999999999999988765533322 24555553 679999887443211
Q ss_pred HHHHhhh-cCceeeCCCCC
Q 004623 175 ALRVAEC-FDKIRVNPGNF 192 (741)
Q Consensus 175 Al~a~~~-vdkiRINPGNi 192 (741)
|..+.+. +|.|=||.++.
T Consensus 77 a~~~~~~g~d~v~l~~~~~ 95 (200)
T cd04722 77 AAAARAAGADGVEIHGAVG 95 (200)
T ss_pred HHHHHHcCCCEEEEeccCC
Confidence 2355555 89998988885
No 128
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=80.06 E-value=71 Score=34.70 Aligned_cols=145 Identities=11% Similarity=0.183 Sum_probs=85.0
Q ss_pred HHcCCC-EEEEecCCHHHHHHHHHHHHhhccCCcc--------cceeeccCCCHHHHHH-HhhhcCceeeCCCCCCchhh
Q 004623 128 ADQGAD-LVRITVQGKREADACFEIKNSLVQKNYN--------IPLVADIHFAPSVALR-VAECFDKIRVNPGNFADRRA 197 (741)
Q Consensus 128 ~~aGce-iVRvavp~~~~A~al~~I~~~L~~~~~~--------iPLVADIHF~~~lAl~-a~~~vdkiRINPGNig~~~k 197 (741)
.+.|.+ |.=+|+-|. ....|..+-.++.+.|+. -|--.|-||.|..-|. -++.....+|.++-+-.+.
T Consensus 79 ~~~g~~~i~Hltcr~~-n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPegh- 156 (296)
T PRK09432 79 KRTGLEAAPHLTCIDA-TPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVH- 156 (296)
T ss_pred HHhCCCeeeecccCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCC-
Confidence 445666 556666664 555566655556666653 2444555555433321 1222344444433332110
Q ss_pred hccccccchHHHHHHHHhHHHhH------------------HHHHHHHHhcC--CeEEEee---------------ccCC
Q 004623 198 QFEQLEYTDDEYQKELQHIEEVF------------------SPLVEKCKKYG--RAVRIGT---------------NHGS 242 (741)
Q Consensus 198 ~f~~~~Ytdeey~~ele~I~e~~------------------~~vv~~ake~g--~~IRIGv---------------N~GS 242 (741)
..-..++.+++++++|+ ..+++.|++.| +||..|+ ..-+
T Consensus 157 ------p~~~~~~~dl~~Lk~K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~ 230 (296)
T PRK09432 157 ------PEAKSAQADLINLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVR 230 (296)
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCCeeecccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCC
Confidence 01112445555666555 78999999998 9999995 4566
Q ss_pred CcHHHHhhcC---CCchH----HHHHHHHHHHHHHHCCCCceEEE
Q 004623 243 LSDRIMSYYG---DSPRG----MVESAFEFARICRKLDFHNFLFS 280 (741)
Q Consensus 243 L~~~il~~yg---~t~~a----mVeSAle~~~i~e~~~F~diviS 280 (741)
+++.+++++- +.+++ =++-|.|.++-|.++|.+.|-|-
T Consensus 231 vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~GvH~y 275 (296)
T PRK09432 231 IPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREGVKDFHFY 275 (296)
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 7777766653 44443 35668888998888888877664
No 129
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=79.85 E-value=48 Score=31.68 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=58.6
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH--------HHHHHHHHHHHhhccCCcccceeeccC---
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK--------READACFEIKNSLVQKNYNIPLVADIH--- 169 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~--------~~A~al~~I~~~L~~~~~~iPLVADIH--- 169 (741)
.-||.++...++....++.+++++++..++|||.+=+..|-- .-.+-+++|.+.. +.++|++....
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~pv~iy~~p~~ 124 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA---DGGLPLKVILETRG 124 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh---cCCceEEEEEECCC
Confidence 567777777766666789999999999999999998876642 2233444555531 24789887653
Q ss_pred C-CHHHHHH----Hhhh-cCceeeCCCCC
Q 004623 170 F-APSVALR----VAEC-FDKIRVNPGNF 192 (741)
Q Consensus 170 F-~~~lAl~----a~~~-vdkiRINPGNi 192 (741)
+ .+....+ +.+. ++-|-..+|..
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~iK~~~~~~ 153 (201)
T cd00945 125 LKTADEIAKAARIAAEAGADFIKTSTGFG 153 (201)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 3 3333222 3333 88888888744
No 130
>PLN00178 sulfite reductase
Probab=79.64 E-value=12 Score=44.46 Aligned_cols=91 Identities=23% Similarity=0.299 Sum_probs=62.5
Q ss_pred eeecC--CCCccccccHHHHHHHHHHHhc------------------------------------------------CCC
Q 004623 641 EYVSC--PSCGRTLFDLQEISAEIREKTS------------------------------------------------HLP 670 (741)
Q Consensus 641 e~ISC--PsCGRTlfDLq~~~~~Ik~~t~------------------------------------------------hLk 670 (741)
+.++| |.|..-.+|.++++.+|.+.+. .||
T Consensus 183 NV~~~p~p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LP 262 (623)
T PLN00178 183 NVLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLP 262 (623)
T ss_pred CeecCCCcCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCC
Confidence 56777 4887888999999998887521 477
Q ss_pred -CcEEEEeeeeecCCCCCCCCceeeecCCC--c---eeEeeecce----------------eeeecCChhHHHHHHHHHH
Q 004623 671 -GVSIAIMGCIVNGPGEMADADFGYVGGAP--G---KIDLYVGKT----------------VVKRGIAMEQATDALIQLI 728 (741)
Q Consensus 671 -gvkIAVMGCIVNGPGEmaDAD~GyvGg~p--G---ki~LY~gke----------------~V~r~Ipeeeavd~Li~lI 728 (741)
-.||||-||--|-- ..--.|+|++.... | ..++|+|+- .+. -|+.+++++-....+
T Consensus 263 RKFKiavsg~~~n~~-~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~-~v~~e~v~~v~~av~ 340 (623)
T PLN00178 263 RKFKIAVTVPGDNSV-DILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLG-YVPKEDILYAVKAIV 340 (623)
T ss_pred CCeEEEEecCccccc-cccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccC-cCCHHHHHHHHHHHH
Confidence 68999999986654 34457999985311 1 367888763 223 388998887544444
Q ss_pred ---Hhccc
Q 004623 729 ---KDHGR 733 (741)
Q Consensus 729 ---k~~g~ 733 (741)
+++|+
T Consensus 341 ~~~rd~G~ 348 (623)
T PLN00178 341 ATQRDYGR 348 (623)
T ss_pred HHHHHhCc
Confidence 45653
No 131
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=79.53 E-value=25 Score=39.33 Aligned_cols=119 Identities=18% Similarity=0.304 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe----cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 004623 117 VAGTVEEVMRIADQGADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRva----vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNi 192 (741)
+++-+++|......+-.+=.|- +|+.=..+.+.+|.+.|++. .|+.-|. +. .+-.||+++
T Consensus 50 ~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~---~~~~~~~-----------ei--t~E~~P~~l 113 (400)
T PRK07379 50 VEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQR---FGIAPDA-----------EI--SLEIDPGTF 113 (400)
T ss_pred HHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh---CCCCCCC-----------EE--EEEeCCCcC
Confidence 4555666665443443444444 57765666777777665432 2332221 11 245799998
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHC
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~ 272 (741)
.. +.++..|+.|+- ||-+.-=|+++++++..|-.. -.+.+.+.++.+++.
T Consensus 114 t~---------------------------e~l~~l~~~Gvn-rislGvQS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~ 163 (400)
T PRK07379 114 DL---------------------------EQLQGYRSLGVN-RVSLGVQAFQDELLALCGRSH--RVKDIFAAVDLIHQA 163 (400)
T ss_pred CH---------------------------HHHHHHHHCCCC-EEEEEcccCCHHHHHHhCCCC--CHHHHHHHHHHHHHc
Confidence 32 245677888864 777767788999999998321 124556667788889
Q ss_pred CCCceEEEE
Q 004623 273 DFHNFLFSM 281 (741)
Q Consensus 273 ~F~diviS~ 281 (741)
||.++.+.+
T Consensus 164 G~~~v~~dl 172 (400)
T PRK07379 164 GIENFSLDL 172 (400)
T ss_pred CCCeEEEEe
Confidence 998766554
No 132
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=79.51 E-value=35 Score=37.38 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHc----CCCEEEEe--cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeC
Q 004623 115 KDVAGTVEEVMRIADQ----GADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~a----GceiVRva--vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRIN 188 (741)
+.+++-++||+...+. +.+-|=+. +|+.-..+.+.+|.+.+++. ++ -| ++. .+-.|
T Consensus 31 ~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~--~~-----------~ei--tiE~n 92 (350)
T PRK08446 31 EYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPY---LS--KD-----------CEI--TTEAN 92 (350)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh---cC--CC-----------ceE--EEEeC
Confidence 4678888998865432 45555554 78776677777777665432 11 00 121 25679
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHH
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i 268 (741)
|..+-. +.++..++.|+- ||-+.-=|++++.++..|-... .+.+++.++.
T Consensus 93 P~~~~~---------------------------e~l~~l~~~Gvn-RiSiGvQS~~~~~L~~lgR~~~--~~~~~~ai~~ 142 (350)
T PRK08446 93 PNSATK---------------------------AWLKGMKNLGVN-RISFGVQSFNEDKLKFLGRIHS--QKQIIKAIEN 142 (350)
T ss_pred CCCCCH---------------------------HHHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCC--HHHHHHHHHH
Confidence 998832 246777888865 6666667788899999883211 4667777888
Q ss_pred HHHCCCCceEEE----EecCChhHHHHHHHHHH
Q 004623 269 CRKLDFHNFLFS----MKASNPVVMVQAYRLLV 297 (741)
Q Consensus 269 ~e~~~F~diviS----~KaSnv~~~i~Ayrlla 297 (741)
+++.||.+|.+. +---+.....+..+.+.
T Consensus 143 lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~ 175 (350)
T PRK08446 143 AKKAGFENISIDLIYDTPLDNKKLLKEELKLAK 175 (350)
T ss_pred HHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 899999865443 33334444444444444
No 133
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.43 E-value=10 Score=41.30 Aligned_cols=106 Identities=9% Similarity=0.160 Sum_probs=70.6
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl 176 (741)
+|.+-.++|=- | ..-+.+.+++-+++|++.|-+.+==-++ ..+-+.+++++++ +++|+.+|=++ ++.-..
T Consensus 183 ~g~~~~l~vDa--N-~~~~~~~A~~~~~~l~~~~i~~iEeP~~-~~d~~~~~~l~~~-----~~ipia~~E~~~~~~~~~ 253 (355)
T cd03321 183 VGDGVGLMVDY--N-QSLTVPEAIERGQALDQEGLTWIEEPTL-QHDYEGHARIASA-----LRTPVQMGENWLGPEEMF 253 (355)
T ss_pred hCCCCEEEEeC--C-CCcCHHHHHHHHHHHHcCCCCEEECCCC-CcCHHHHHHHHHh-----cCCCEEEcCCCcCHHHHH
Confidence 34444555421 2 2345566666666776666555443232 1345667777775 88999999775 455555
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 177 ~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
..++ ++|-|++.|..+|.-. .+.++.+.|+++|+++
T Consensus 254 ~~i~~~~~d~i~~~~~~~GGit----------------------~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 254 KALSAGACDLVMPDLMKIGGVT----------------------GWLRASALAEQAGIPM 291 (355)
T ss_pred HHHHhCCCCeEecCHhhhCCHH----------------------HHHHHHHHHHHcCCee
Confidence 5555 4999999999999744 3678999999999997
No 134
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=79.22 E-value=47 Score=35.18 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=92.1
Q ss_pred HHHHHcCCCEEEEe---------cCCH------HHHHHHHHHHHhhccCCcc-cceeeccCCCHH----HHH----HHhh
Q 004623 125 MRIADQGADLVRIT---------VQGK------READACFEIKNSLVQKNYN-IPLVADIHFAPS----VAL----RVAE 180 (741)
Q Consensus 125 ~~L~~aGceiVRva---------vp~~------~~A~al~~I~~~L~~~~~~-iPLVADIHF~~~----lAl----~a~~ 180 (741)
+-++++|+|.+=++ .||. +-....+.|++ +.+ +|++||+-|.|- -+. +.++
T Consensus 26 ~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r-----~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~ 100 (240)
T cd06556 26 KQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRR-----GAPLALIVADLPFGAYGAPTAAFELAKTFMR 100 (240)
T ss_pred HHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHh-----hCCCCCEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 44567799998776 3442 44556666666 465 799999988842 222 2233
Q ss_pred h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE--EEeeccCCCcHHHH-----hhcC
Q 004623 181 C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSLSDRIM-----SYYG 252 (741)
Q Consensus 181 ~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I--RIGvN~GSL~~~il-----~~yg 252 (741)
. ++.|-|--+ . .+.+.++++++.+++| |+|. .+..+. +.||
T Consensus 101 aGa~gv~iED~-----~----------------------~~~~~i~ai~~a~i~ViaRtd~----~pq~~~~~gg~~~~~ 149 (240)
T cd06556 101 AGAAGVKIEGG-----E----------------------WHIETLQMLTAAAVPVIAHTGL----TPQSVNTSGGDEGQY 149 (240)
T ss_pred cCCcEEEEcCc-----H----------------------HHHHHHHHHHHcCCeEEEEeCC----chhhhhccCCceeec
Confidence 3 666655443 0 1233456666667776 6665 333332 3355
Q ss_pred CCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchh
Q 004623 253 DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMK 325 (741)
Q Consensus 253 ~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IK 325 (741)
.+.++ .+.+++-++.+++.|=+=|.+-+. + .+..+.+++. .+-|+-.-- ||.+-+|.+-
T Consensus 150 ~~~~~-~~~ai~Ra~ay~~AGAd~i~~e~~--~----~e~~~~i~~~-----~~~P~~~~g--ag~~~dgq~l 208 (240)
T cd06556 150 RGDEA-GEQLIADALAYAPAGADLIVMECV--P----VELAKQITEA-----LAIPLAGIG--AGSGTDGQFL 208 (240)
T ss_pred cCHHH-HHHHHHHHHHHHHcCCCEEEEcCC--C----HHHHHHHHHh-----CCCCEEEEe--cCcCCCceEE
Confidence 44444 677999999999999999999864 2 3444566776 678865422 3445555443
No 135
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=79.18 E-value=4.1 Score=47.12 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEEec----------------CCHHHHHHHHHHHHhhccCCcccceeeccCCCH-HHHHHHhhh-
Q 004623 120 TVEEVMRIADQGADLVRITV----------------QGKREADACFEIKNSLVQKNYNIPLVADIHFAP-SVALRVAEC- 181 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvav----------------p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~-~lAl~a~~~- 181 (741)
|.++.+++.++|||.|++.. |-..+-..+.++.+. .++|+|||-.+.+ .-+.+|+..
T Consensus 299 t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-----~~vpVIadGGI~~~~di~kAla~G 373 (505)
T PLN02274 299 TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-----HGVPVIADGGISNSGHIVKALTLG 373 (505)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHcC
Confidence 45555667889999999851 222344556666664 6799999977663 333355554
Q ss_pred cCcee
Q 004623 182 FDKIR 186 (741)
Q Consensus 182 vdkiR 186 (741)
++.|=
T Consensus 374 A~~V~ 378 (505)
T PLN02274 374 ASTVM 378 (505)
T ss_pred CCEEE
Confidence 55553
No 136
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=79.07 E-value=30 Score=37.45 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHH-HHhhhcCceee------
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL-RVAECFDKIRV------ 187 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl-~a~~~vdkiRI------ 187 (741)
.+.+..++|+.++.+.|...+.+-+....+.+.++.|++.+ + ++.|..|-|-.|.... ..++.++...+
T Consensus 131 ~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~---~-~~~l~vDaN~~~~~~~a~~~~~l~~~~~~~iEeP 206 (324)
T TIGR01928 131 ANDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRF---P-QIPLVIDANESYDLQDFPRLKELDRYQLLYIEEP 206 (324)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhC---C-CCcEEEECCCCCCHHHHHHHHHHhhCCCcEEECC
Confidence 35688899999999999999999885556777888888864 1 4789999987665432 11233443321
Q ss_pred -CCCCCCchhhhc----------cccccchHHHHHHHHh-------H-------HHhHHHHHHHHHhcCCeEEEee
Q 004623 188 -NPGNFADRRAQF----------EQLEYTDDEYQKELQH-------I-------EEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 188 -NPGNig~~~k~f----------~~~~Ytdeey~~ele~-------I-------~e~~~~vv~~ake~g~~IRIGv 238 (741)
.|.|+.. -+.+ .+..++-.++..-++. + -..+.++++.|.++|+++=+|-
T Consensus 207 ~~~~~~~~-~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~ 281 (324)
T TIGR01928 207 FKIDDLSM-LDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGG 281 (324)
T ss_pred CChhHHHH-HHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcc
Confidence 2223211 0001 1122333334433321 0 1235689999999999998874
No 137
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.03 E-value=78 Score=34.38 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=115.6
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEE-----------E-----EecCCHHHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLV-----------R-----ITVQGKREADACFE 150 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiV-----------R-----vavp~~~~A~al~~ 150 (741)
.+++|++.+ -|-|+.-.|++....| .+..++=-.+.++-|+-+| | ...-+.+....+++
T Consensus 4 P~~ig~~~l--~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~ 81 (336)
T cd02932 4 PLTLRGVTL--KNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKR 81 (336)
T ss_pred CeeECCEEE--eccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHH
Confidence 467777776 6778888887655444 5677777888888888887 2 12335778899999
Q ss_pred HHHhhccCCcccceeeccCCCHHHHHHHhhh-----------cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHh
Q 004623 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAEC-----------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEV 219 (741)
Q Consensus 151 I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-----------vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~ 219 (741)
+.+.+++.|+. +++=++...+.+...... ...--+-|..+..........+.| .+|+++|.+.
T Consensus 82 l~~~vh~~G~~--~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt----~~eI~~ii~~ 155 (336)
T cd02932 82 IVDFIHSQGAK--IGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELT----REEIAEVVDA 155 (336)
T ss_pred HHHHHHhcCCc--EEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCC----HHHHHHHHHH
Confidence 99999998875 455543333322110000 000012222221100000112334 4566777777
Q ss_pred HHHHHHHHHhcCCe-EEEeeccCCCcHHHH--------hhcCCCchHHHHHHHHHHHHHHH-CCCCceEEEEecCCh---
Q 004623 220 FSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKASNP--- 286 (741)
Q Consensus 220 ~~~vv~~ake~g~~-IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~-~~F~diviS~KaSnv--- 286 (741)
|..-.+.|++.|.- |-|=.-||-|-..++ .+||.+.+.=.+-.+|-++-.++ .| .|+.|++|-|-.
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG-~d~~v~vri~~~~~~ 234 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP-EDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEEcccccC
Confidence 88788888887754 334344565433333 35775544444555555555554 33 467899997610
Q ss_pred --hHHHHHHHHHHHHhhcCCCCc
Q 004623 287 --VVMVQAYRLLVAEMYVHGWDY 307 (741)
Q Consensus 287 --~~~i~Ayrlla~~m~~~g~dy 307 (741)
-...+-...+++++++.|.||
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd~ 257 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDL 257 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCE
Confidence 011233344555555556653
No 138
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=78.97 E-value=38 Score=37.02 Aligned_cols=135 Identities=18% Similarity=0.269 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 004623 116 DVAGTVEEVMRIAD-QGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (741)
Q Consensus 116 Dv~atv~Qi~~L~~-aGceiVRva--vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNi 192 (741)
.+++.++||..+.. .+.+.|-+. +|+.-..+.+..|.+.+.+ +.+. -++.| .+-.||+++
T Consensus 35 y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~--~~~~--~~~ei-------------tie~~p~~~ 97 (374)
T PRK05799 35 YIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKK--LNKK--EDLEF-------------TVEGNPGTF 97 (374)
T ss_pred HHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHh--CCCC--CCCEE-------------EEEeCCCcC
Confidence 58888888876532 234556655 5654334445555554322 2111 11111 234689988
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHC
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~ 272 (741)
-+ +.++..++.|+. ||-+.-=|+++++++..|-.. =++.+++.++.+.+.
T Consensus 98 t~---------------------------e~l~~l~~~G~~-rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~ 147 (374)
T PRK05799 98 TE---------------------------EKLKILKSMGVN-RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKL 147 (374)
T ss_pred CH---------------------------HHHHHHHHcCCC-EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHc
Confidence 32 367888888864 666666889999999988321 156677788899999
Q ss_pred CCCceEEEE----ecCChhHHHHHHHHHH
Q 004623 273 DFHNFLFSM----KASNPVVMVQAYRLLV 297 (741)
Q Consensus 273 ~F~diviS~----KaSnv~~~i~Ayrlla 297 (741)
||.+|.+.+ ---+.....+..+.+.
T Consensus 148 g~~~v~~dli~GlPgqt~e~~~~~l~~~~ 176 (374)
T PRK05799 148 GFNNINVDLMFGLPNQTLEDWKETLEKVV 176 (374)
T ss_pred CCCcEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 998665554 2333444444444443
No 139
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.93 E-value=39 Score=36.01 Aligned_cols=98 Identities=23% Similarity=0.316 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------HHHH--HH---------HHHHHHhhccCCcccceeeccCCCH---
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQG---------KREA--DA---------CFEIKNSLVQKNYNIPLVADIHFAP--- 172 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~---------~~~A--~a---------l~~I~~~L~~~~~~iPLVADIHF~~--- 172 (741)
|.+.|.+-++.|.+.|+|++=+-+|- .+.| +| +=++.++++++..++|+|.-.-||+
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 78999999999999999999999997 3332 11 1233444666678899999888875
Q ss_pred ----HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 173 ----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 173 ----~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
+...+|.++ ++.+=|+ .- .+ +...+++++|+++|+..=.-+
T Consensus 104 ~G~e~f~~~~~~aGvdGviip-DL------p~------------------ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIP-DL------PP------------------EEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEEC-CC------CH------------------HHHHHHHHHHHHcCCcEEEEe
Confidence 344466676 9998884 21 11 125679999999997764444
No 140
>PRK14017 galactonate dehydratase; Provisional
Probab=78.91 E-value=9.6 Score=41.97 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccCCcccceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 146 DACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 146 ~al~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
+.+.+++++ +++|+.+|=+ |++.-+...++ ++|-+++.|+.+|.-. ...+
T Consensus 218 ~~~~~L~~~-----~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit----------------------~~~~ 270 (382)
T PRK14017 218 EALPEIAAQ-----TSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGIT----------------------ECRK 270 (382)
T ss_pred HHHHHHHhc-----CCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHH----------------------HHHH
Confidence 344455553 7899999966 45555555555 4999999999999843 3678
Q ss_pred HHHHHHhcCCeEEEeec
Q 004623 223 LVEKCKKYGRAVRIGTN 239 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN 239 (741)
+.+.|.++|+++=+|..
T Consensus 271 ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 271 IAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHcCCeEeecCC
Confidence 99999999999877643
No 141
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=78.77 E-value=37 Score=37.08 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=51.0
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccc
Q 004623 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLE 203 (741)
Q Consensus 124 i~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~ 203 (741)
++.|.++||+ .++|-+.+||..+. +.|++.|++-=-...+.-...+++. .+.++=.++
T Consensus 46 ~~~l~~~G~~--~~~vas~~Ea~~lr-------~~G~~~~ilvl~~~~~~~~~~~~~~--~l~~~v~s~----------- 103 (367)
T TIGR00492 46 AKTLLQAGAD--YFGVANLEEAITLR-------KAGITAPILLLGGFFAEDLKILAAW--DLTTTVHSV----------- 103 (367)
T ss_pred HHHHHHCCCC--EEEECcHHHHHHHH-------hcCCCCCEEEEeCCCHHHHHHHHHc--CCEEEECCH-----------
Confidence 3467789987 68888888888754 3466655433223333333333332 122222222
Q ss_pred cchHHHHHHHHhHHHhHHHHHHHHHhcCCeE--EEeeccCCCcHHHHhhcCCCchH
Q 004623 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSLSDRIMSYYGDSPRG 257 (741)
Q Consensus 204 Ytdeey~~ele~I~e~~~~vv~~ake~g~~I--RIGvN~GSL~~~il~~yg~t~~a 257 (741)
+.++.+-+.|+++|.++ =|=||.| |.|+|-+++.
T Consensus 104 --------------~~l~~l~~~a~~~~~~~~V~l~VdtG------m~R~Gi~~~e 139 (367)
T TIGR00492 104 --------------EQLQALEEALLKEPKRLKVHLKIDTG------MNRLGVKPDE 139 (367)
T ss_pred --------------HHHHHHHHHHHHcCCceEEEEEeeCC------CCCCCCChHH
Confidence 12445566677777443 4447888 5899966643
No 142
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=78.65 E-value=3.6 Score=47.31 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCEEE--------EecCCH-----HHHHHHHHHHHhhccCCcccceeeccCCC--HHHHHHHhhh-c
Q 004623 119 GTVEEVMRIADQGADLVR--------ITVQGK-----READACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAEC-F 182 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVR--------vavp~~-----~~A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~-v 182 (741)
+|.++++.|.++|||.|+ +|+... ..+.++-+..+.+++ ..+|+|||-.+. ..++ +|+.+ +
T Consensus 275 ~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~--~~~~viadGgi~~~~di~-kala~GA 351 (475)
T TIGR01303 275 VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK--LGGHVWADGGVRHPRDVA-LALAAGA 351 (475)
T ss_pred CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH--cCCcEEEeCCCCCHHHHH-HHHHcCC
Confidence 466778888999999999 444332 345566666554444 369999995554 4444 44443 5
Q ss_pred Cceee
Q 004623 183 DKIRV 187 (741)
Q Consensus 183 dkiRI 187 (741)
+.+=+
T Consensus 352 ~~vm~ 356 (475)
T TIGR01303 352 SNVMV 356 (475)
T ss_pred CEEee
Confidence 55443
No 143
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=78.53 E-value=32 Score=40.33 Aligned_cols=135 Identities=20% Similarity=0.231 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCC
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG 190 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPG 190 (741)
.+.+++.-.++-+.|+..|.+++-++.| ++++.+.++.|.++| |+..-+.+=+.-..+++..+.|+
T Consensus 74 a~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~---g~~~~I~~l~rc~~~di~~tvEA--------- 141 (560)
T KOG2367|consen 74 AFLTTEQKLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTL---GYVPVICTLIRCHMDDIERTVEA--------- 141 (560)
T ss_pred CcCCcHHHHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhC---CCCceEEEeeccchHHHHHHHHH---------
Confidence 4567889999999999999999999977 578999999999972 55444434344444444433333
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCchHHHHHHHHHHHH
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARI 268 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~i 268 (741)
+.-||+--+-.=|++ .++..+|- .+-+-.+++|.+-+++
T Consensus 142 ---------------------------------l~~aKr~~Vh~~~aT------Sd~~rey~~~kskeevi~~Ave~ikf 182 (560)
T KOG2367|consen 142 ---------------------------------LKYAKRPRVHVFIAT------SDIHREYKLKKSKEEVIESAVEVIKF 182 (560)
T ss_pred ---------------------------------hhccCcceEEEEecc------cHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 122233223333333 34566663 5778999999999999
Q ss_pred HHHCCCCceEEEEecCChhHHHHHHHHHHH
Q 004623 269 CRKLDFHNFLFSMKASNPVVMVQAYRLLVA 298 (741)
Q Consensus 269 ~e~~~F~diviS~KaSnv~~~i~Ayrlla~ 298 (741)
..++||-+|-||.-.+.--+-.-++..+-+
T Consensus 183 vkslg~~~ieFSpEd~~rse~~fl~eI~~a 212 (560)
T KOG2367|consen 183 VKSLGKWDIEFSPEDFGRSELEFLLEILGA 212 (560)
T ss_pred HHhcccceEEECccccccCcHHHHHHHHHH
Confidence 999999999999987654444555554433
No 144
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=78.20 E-value=82 Score=34.02 Aligned_cols=154 Identities=15% Similarity=0.207 Sum_probs=95.9
Q ss_pred HHHHHcCCCEEEEe---------cCC------HHHHHHHHHHHHhhccCCcccc-eeeccCCC-H----HH----HHHHh
Q 004623 125 MRIADQGADLVRIT---------VQG------KREADACFEIKNSLVQKNYNIP-LVADIHFA-P----SV----ALRVA 179 (741)
Q Consensus 125 ~~L~~aGceiVRva---------vp~------~~~A~al~~I~~~L~~~~~~iP-LVADIHF~-~----~l----Al~a~ 179 (741)
+-++++|+|++=+. .|| .+-...++.|++ +.+.| +|||+-|. | .- |...+
T Consensus 29 rl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r-----~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~ 103 (264)
T PRK00311 29 KLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVAR-----GAPRALVVADMPFGSYQASPEQALRNAGRLM 103 (264)
T ss_pred HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh-----cCCCCcEEEeCCCCCccCCHHHHHHHHHHHH
Confidence 34577889988432 011 122334455555 57785 99999876 5 32 33444
Q ss_pred h-h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE--EEeeccCCCcHH-HHhhcCCC
Q 004623 180 E-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSLSDR-IMSYYGDS 254 (741)
Q Consensus 180 ~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I--RIGvN~GSL~~~-il~~yg~t 254 (741)
+ . ++.|-|--| . ...+.|+++.+.|+|+ =||.|.=|-... =...-|.|
T Consensus 104 ~~aGa~aVkiEdg-----~----------------------~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt 156 (264)
T PRK00311 104 KEAGAHAVKLEGG-----E----------------------EVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRD 156 (264)
T ss_pred HHhCCeEEEEcCc-----H----------------------HHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCC
Confidence 5 4 777776654 1 1345677777889998 578776655221 00112334
Q ss_pred chHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCch
Q 004623 255 PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRM 324 (741)
Q Consensus 255 ~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~I 324 (741)
. +-.+.+++-++.+++.|-+=|++-+ ++. +.-+.++++ .+-|+ +|+ =||..-||-|
T Consensus 157 ~-~~a~~~i~ra~a~~eAGA~~i~lE~----v~~--~~~~~i~~~-----l~iP~-igi-GaG~~~dgqv 212 (264)
T PRK00311 157 E-EAAEKLLEDAKALEEAGAFALVLEC----VPA--ELAKEITEA-----LSIPT-IGI-GAGPDCDGQV 212 (264)
T ss_pred H-HHHHHHHHHHHHHHHCCCCEEEEcC----CCH--HHHHHHHHh-----CCCCE-EEe-ccCCCCCcee
Confidence 4 3368899999999999999999976 322 455667777 67776 342 2777778765
No 145
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=78.15 E-value=88 Score=32.26 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~---~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGN 191 (741)
.+.+....|+.++ ..|||+|=+-+--. ...+.+..+-+++.....++|+|.-+=-.. + -|.
T Consensus 9 ~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~----e-----------GG~ 72 (228)
T TIGR01093 9 PDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTIS----E-----------GGK 72 (228)
T ss_pred CCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChh----h-----------CCC
Confidence 4677788899998 89999965543322 122223333333332224689988532111 0 011
Q ss_pred CCchhhhccccccchHHHHHHHHhH----------------HHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCc
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHI----------------EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I----------------~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~ 255 (741)
+ ..++++|.+-++++ ++.+.++++.+++.++.| |+-.|= +..||
T Consensus 73 ~----------~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kv-I~S~H~---------f~~tp 132 (228)
T TIGR01093 73 F----------PGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKI-IMSYHD---------FQKTP 132 (228)
T ss_pred C----------CCCHHHHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEE-EEeccC---------CCCCC
Confidence 0 01112222222221 234677888888887765 454331 12355
Q ss_pred hHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchh
Q 004623 256 RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMK 325 (741)
Q Consensus 256 ~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IK 325 (741)
.. +.-.+.++-++++|.+=++|...+.+..+..+-.+...+. .+. .+.|+ ++ =++|..|++-
T Consensus 133 ~~--~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~-~~~-~~~p~-i~---~~MG~~G~~S 194 (228)
T TIGR01093 133 SW--EEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKV-DEH-ADVPL-IT---MSMGDRGKIS 194 (228)
T ss_pred CH--HHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHH-Hhc-CCCCE-EE---EeCCCCChhH
Confidence 22 1234567788899999999999988876655444333222 111 34453 12 2477777664
No 146
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=78.13 E-value=33 Score=38.85 Aligned_cols=151 Identities=12% Similarity=0.187 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHc---CCCEEEEe----cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceee
Q 004623 115 KDVAGTVEEVMRIADQ---GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRV 187 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~a---GceiVRva----vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRI 187 (741)
..+++-+++|+.+++. +..+-.|. +|+.-..+.|.+|.+.+++. .|+..|.++ .+..
T Consensus 81 ~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~---~~~~~~~e~-------------tie~ 144 (453)
T PRK09249 81 PYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREH---FNFAPDAEI-------------SIEI 144 (453)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHh---CCCCCCCEE-------------EEEe
Confidence 4678888998877653 33333332 45554455566666654432 233223222 3568
Q ss_pred CCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHH
Q 004623 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (741)
Q Consensus 188 NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~ 267 (741)
||.++.. +.++..++.|+. ||-+.-=|++++.++.++.. .-.+.+++-++
T Consensus 145 np~~lt~---------------------------e~l~~l~~aG~~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~ 194 (453)
T PRK09249 145 DPRELDL---------------------------EMLDALRELGFN-RLSLGVQDFDPEVQKAVNRI--QPFEFTFALVE 194 (453)
T ss_pred cCCcCCH---------------------------HHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCC--CCHHHHHHHHH
Confidence 9999832 356777788863 66666677889999998732 12355667788
Q ss_pred HHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccccc
Q 004623 268 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (741)
Q Consensus 268 i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVT 314 (741)
.+.+.||.++.+.+=.-=+..+.+..+...+...+.+ |=|+.+.
T Consensus 195 ~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~---~~~i~~y 238 (453)
T PRK09249 195 AARELGFTSINIDLIYGLPKQTPESFARTLEKVLELR---PDRLAVF 238 (453)
T ss_pred HHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcC---CCEEEEc
Confidence 8899999888777654434444444444333333333 3455544
No 147
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.49 E-value=17 Score=36.13 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcccceeeccCCC-H-H-HHHHHhhh-cCcee
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFA-P-S-VALRVAEC-FDKIR 186 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRva--vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~-~-lAl~a~~~-vdkiR 186 (741)
|..|.+.+++=+.+| +.|-+++=+. .......+.++.|++. --+.++++|+|+- + . .+.+++++ +|-|=
T Consensus 7 D~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~----~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 7 DLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEA----FPDRKVLADLKTMDAGEYEAEQAFAAGADIVT 81 (206)
T ss_pred cCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEeeccchHHHHHHHHHcCCCEEE
Confidence 677888888878888 7888888774 3334456777777774 1247899999864 2 2 35566665 66665
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 187 INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
+..-. +. ....++++.|+++|+++=++
T Consensus 82 vh~~~-~~-----------------------~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 82 VLGVA-DD-----------------------ATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EeccC-CH-----------------------HHHHHHHHHHHHcCCEEEEE
Confidence 43221 11 12467899999999877554
No 148
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=77.47 E-value=13 Score=42.56 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceee--CCC
Q 004623 120 TVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV--NPG 190 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvavp~~---~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI--NPG 190 (741)
+.+.+..|.++|++++-+.+.+- ...+.++.|+++ .-++|+++=-=.++.-|..++++ +|-|++ -||
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~----~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAK----YPDVQIIAGNVATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhh----CCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 48899999999999997766532 455566666664 22799886555678999999997 999985 465
No 149
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=77.25 E-value=8.1 Score=42.07 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCCEEEEec----CCH----------------------H-----------HHHHHHHHHHhhccCCcc
Q 004623 119 GTVEEVMRIADQGADLVRITV----QGK----------------------R-----------EADACFEIKNSLVQKNYN 161 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvav----p~~----------------------~-----------~A~al~~I~~~L~~~~~~ 161 (741)
+|+++.++-.++|+|+||-|- ++. + .-+-|+++++. .+
T Consensus 120 stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-----~~ 194 (283)
T cd04727 120 RNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL-----GR 194 (283)
T ss_pred CCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh-----cC
Confidence 467788888999999999994 430 1 11345666664 56
Q ss_pred ccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 162 IPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 162 iPLV--ADIHF-~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
+|+| |--.. +|.-|..+++. ++.|=+.=+=+...+ ..-.-.+|.+.+.+..+ ...|++..+..|-+| .|
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~d-----P~~~tk~f~~ai~~~~~-~~~~~e~~~~~~~~m-~~ 267 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSEN-----PEKRARAIVEAVTHYDD-PEILAEVSEGLGEAM-VG 267 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCC-----HHHHHHHHHHHHHhcCC-HHHHHHHHcccccCC-CC
Confidence 9997 99888 89888888887 888876544332211 01123456677777666 677888888888777 58
Q ss_pred eccCCCcH
Q 004623 238 TNHGSLSD 245 (741)
Q Consensus 238 vN~GSL~~ 245 (741)
.|-.||+.
T Consensus 268 ~~~~~~~~ 275 (283)
T cd04727 268 IDIASLKE 275 (283)
T ss_pred cccccCCH
Confidence 88888765
No 150
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.17 E-value=81 Score=31.35 Aligned_cols=65 Identities=22% Similarity=0.148 Sum_probs=44.0
Q ss_pred HHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHhhccCCcccceeecc-CCC--HHHHHHHhhh-cCceeeCCCCCC
Q 004623 123 EVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADI-HFA--PSVALRVAEC-FDKIRVNPGNFA 193 (741)
Q Consensus 123 Qi~~L~~aGceiVRvavp~~--~~A~al~~I~~~L~~~~~~iPLVADI-HF~--~~lAl~a~~~-vdkiRINPGNig 193 (741)
|+..+.++|+|+|=+-.-.. .-.+.+..+++ +.+|+++++ ... ...+..+.+. +|-|-++||--+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~------~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~ 138 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKK------HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDE 138 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH------cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCc
Confidence 88899999999886554322 12344555555 568999885 432 3566677774 898999997544
No 151
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=77.11 E-value=64 Score=34.89 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe---cCCHH---------------HHHHHHHHHHhhccCCcccceeeccCCCHHHH
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRIT---VQGKR---------------EADACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRva---vp~~~---------------~A~al~~I~~~L~~~~~~iPLVADIHF~~~lA 175 (741)
..+.+..+++++++.+.|+.-+-++ .|+.. -.+.+++|++.+.+.+. .|-+.=-.++...+
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~-~~~~~~~~lt~e~i 118 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGL-LPHTNAGILTREEM 118 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC-CccccCCCCCHHHH
Confidence 6688999999999999999988887 33322 24555555555444443 34222223444443
Q ss_pred HHHhhhcCceeeCCCCCCchhhhcc--ccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCC
Q 004623 176 LRVAECFDKIRVNPGNFADRRAQFE--QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD 253 (741)
Q Consensus 176 l~a~~~vdkiRINPGNig~~~k~f~--~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~ 253 (741)
..-.+.-..+=++|+...+.- ++ ...++...|. ..-+.++.|++.|+++..|+--| + |.
T Consensus 119 ~~Lk~ag~~l~~~~et~~e~l--~~~v~~~~~~~~~~--------~~l~~i~~a~~~Gi~~~~~~i~G-~--------gE 179 (336)
T PRK06245 119 EKLKEVNASMGLMLEQTSPRL--LNTVHRGSPGKDPE--------LRLETIENAGKLKIPFTTGILIG-I--------GE 179 (336)
T ss_pred HHHHHhCCCCCCCccccchhh--HHhhccCCCCCCHH--------HHHHHHHHHHHcCCceeeeeeeE-C--------CC
Confidence 222222112335555443211 00 1112222222 23456788889999887776544 2 35
Q ss_pred CchHHHHHHHHHHHHHHHC-CCCceE
Q 004623 254 SPRGMVESAFEFARICRKL-DFHNFL 278 (741)
Q Consensus 254 t~~amVeSAle~~~i~e~~-~F~div 278 (741)
|.+..++......++-.+. ||..+.
T Consensus 180 t~ed~~~~l~~l~~l~~~~gg~~~~~ 205 (336)
T PRK06245 180 TWEDRAESLEAIAELHERYGHIQEVI 205 (336)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 6666666544444443343 365544
No 152
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=76.95 E-value=28 Score=36.08 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFA 193 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig 193 (741)
.|.+..++-.+.|.+.|...+=||..+....+.+++++++. -++.+=|=-=.++.-|..|+++ .+=| +-|+=
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~----~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~~-- 89 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV----PDALIGAGTVLNPEQLRQAVDAGAQFI-VSPGL-- 89 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC----CCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCCC--
Confidence 48899999999999999999999999999999999999862 1366777777889999999987 4444 88863
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCC
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~ 273 (741)
+ .+|++.|+++|+|.==|+ -||. .+..+.++|
T Consensus 90 ~--------------------------~~v~~~~~~~~i~~iPG~--------------~Tpt--------Ei~~A~~~G 121 (204)
T TIGR01182 90 T--------------------------PELAKHAQDHGIPIIPGV--------------ATPS--------EIMLALELG 121 (204)
T ss_pred C--------------------------HHHHHHHHHcCCcEECCC--------------CCHH--------HHHHHHHCC
Confidence 2 359999999999984444 2553 334456788
Q ss_pred CCceEEEE
Q 004623 274 FHNFLFSM 281 (741)
Q Consensus 274 F~diviS~ 281 (741)
++-++|==
T Consensus 122 a~~vKlFP 129 (204)
T TIGR01182 122 ITALKLFP 129 (204)
T ss_pred CCEEEECC
Confidence 88877743
No 153
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.71 E-value=5.3 Score=44.50 Aligned_cols=66 Identities=23% Similarity=0.185 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCEEEEe--------cCCH-----HHHHHHHHHHHhhccCCcccceeec--cCCCHHHHHHHhhh-c
Q 004623 119 GTVEEVMRIADQGADLVRIT--------VQGK-----READACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC-F 182 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRva--------vp~~-----~~A~al~~I~~~L~~~~~~iPLVAD--IHF~~~lAl~a~~~-v 182 (741)
+|-++.+.|.+||+|.|||- ++-. -...|+.+..+..+ +..+|+||| |++...+|. |+.+ .
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~--~~gvpiIADGGi~~sGDI~K-AlaaGA 236 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAH--GLGGQIVSDGGCTVPGDVAK-AFGGGA 236 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHH--HcCCCEEecCCcccccHHHH-HHHcCC
Confidence 57788999999999999953 3221 35556666655433 467899999 899888884 3333 5
Q ss_pred Cceee
Q 004623 183 DKIRV 187 (741)
Q Consensus 183 dkiRI 187 (741)
+.|=+
T Consensus 237 d~VMl 241 (346)
T PRK05096 237 DFVML 241 (346)
T ss_pred CEEEe
Confidence 65544
No 154
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=76.64 E-value=70 Score=35.74 Aligned_cols=186 Identities=18% Similarity=0.192 Sum_probs=104.4
Q ss_pred eEEEceeecCCCCceEEEeccC-C-CCCC---HHHHHHHHHHHHHcCCCEEEEe---c---------C--------CHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTT-N-DTKD---VAGTVEEVMRIADQGADLVRIT---V---------Q--------GKRE 144 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~-t-~T~D---v~atv~Qi~~L~~aGceiVRva---v---------p--------~~~~ 144 (741)
.+++|++.+ -|-|+.-.|++ . .|.| .+..++--.+.++.|+-+|=.- | + +.+.
T Consensus 4 P~~ig~~~l--kNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 4 PIKIGKVEI--KNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CeeECCEEE--eCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHH
Confidence 466777666 67888888964 2 2455 6777888888888787776211 1 1 2234
Q ss_pred HHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhhcCceeeCCCCCCchhhh-ccccccchHHHHHHHHhHHHhHHH
Q 004623 145 ADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAECFDKIRVNPGNFADRRAQ-FEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 145 A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~vdkiRINPGNig~~~k~-f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
...++++.+..++.|. ++++=++.. .+.+......-.+ =+-|..+-..... ....+.|. +|++.|.+.|..
T Consensus 82 i~~~k~l~davh~~G~--~i~~QL~H~~Gr~~~~~~~~~~~-~~~ps~~~~~~~~~~~p~~mt~----~eI~~ii~~f~~ 154 (382)
T cd02931 82 IRTAKEMTERVHAYGT--KIFLQLTAGFGRVCIPGFLGEDK-PVAPSPIPNRWLPEITCRELTT----EEVETFVGKFGE 154 (382)
T ss_pred hHHHHHHHHHHHHcCC--EEEEEccCcCCCccCccccCCCC-ccCCCCCCCCcCCCCCCCcCCH----HHHHHHHHHHHH
Confidence 6889999999888886 456555322 3333111100001 1333333211000 01123333 456677788888
Q ss_pred HHHHHHhcCCeE-EE-eeccCCCcHHH--------HhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecC
Q 004623 223 LVEKCKKYGRAV-RI-GTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS 284 (741)
Q Consensus 223 vv~~ake~g~~I-RI-GvN~GSL~~~i--------l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS 284 (741)
-.+.|++.|--. =| |.|||-|=..+ -.+||.+.+.=..=.+|-++-.++.==.++.|++|-|
T Consensus 155 AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~ 226 (382)
T cd02931 155 SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYS 226 (382)
T ss_pred HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 888888877653 33 33448763333 4458866554444445555544443115779999987
No 155
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=76.48 E-value=11 Score=43.31 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCcee--eCCCCCCc
Q 004623 121 VEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNPGNFAD 194 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~~---~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR--INPGNig~ 194 (741)
.+.+..|.++|++.|=+-+-+- .-.+.+++||+. --++|+||+-=-.+.-|..++++ +|.|+ |-||-+-
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~----~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~- 301 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL----DLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMC- 301 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHH----CCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccc-
Confidence 4778899999999988765543 334445555553 33699999988899999999998 99998 6777663
Q ss_pred hhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 195 ~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
....||.--+. --..+.+++++|+++++||
T Consensus 302 -----ttr~~~~~g~~-----~~~a~~~~~~~~~~~~~~v 331 (475)
T TIGR01303 302 -----TTRMMTGVGRP-----QFSAVLECAAEARKLGGHV 331 (475)
T ss_pred -----cCccccCCCCc-----hHHHHHHHHHHHHHcCCcE
Confidence 22233332111 1223445667778888776
No 156
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=75.81 E-value=7.3 Score=45.01 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHhhccCCcccceeeccC-CCHHHHHHHhhh-cCc
Q 004623 120 TVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAEC-FDK 184 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvav-p~------------~~~A~al~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~~-vdk 184 (741)
|.++.+.|.+||||.|++.+ |+ .....++.++.+.+++ .++|+|||-. .++.-+.+|+.. ++.
T Consensus 292 t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~--~~v~vIadGGi~~~~di~kAla~GA~~ 369 (495)
T PTZ00314 292 TADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARE--RGVPCIADGGIKNSGDICKALALGADC 369 (495)
T ss_pred CHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhh--cCCeEEecCCCCCHHHHHHHHHcCCCE
Confidence 45677788999999999753 21 1233455555544333 5699999966 345555566665 666
Q ss_pred eee
Q 004623 185 IRV 187 (741)
Q Consensus 185 iRI 187 (741)
|=+
T Consensus 370 Vm~ 372 (495)
T PTZ00314 370 VML 372 (495)
T ss_pred EEE
Confidence 644
No 157
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=75.65 E-value=5.1 Score=44.69 Aligned_cols=63 Identities=25% Similarity=0.428 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCEEEEe----------------cCCHHHHHHHHHHHHhhccCCcccceeec--cCCCHHHHHHHhh
Q 004623 119 GTVEEVMRIADQGADLVRIT----------------VQGKREADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAE 180 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRva----------------vp~~~~A~al~~I~~~L~~~~~~iPLVAD--IHF~~~lAl~a~~ 180 (741)
+|-++.+.|.++|+|.|||- +| .+-|+.+..+..+ .+.+|+||| |++...++. |+.
T Consensus 158 ~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P---Q~tAv~~~a~~a~--~~~v~iIADGGi~~sGDi~K-Ala 231 (352)
T PF00478_consen 158 VTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP---QLTAVYECAEAAR--DYGVPIIADGGIRTSGDIVK-ALA 231 (352)
T ss_dssp -SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT---HHHHHHHHHHHHH--CTTSEEEEESS-SSHHHHHH-HHH
T ss_pred CCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCc---HHHHHHHHHHHhh--hccCceeecCCcCcccceee-eee
Confidence 47788899999999999996 44 4444444444322 367999999 788777774 333
Q ss_pred h-cCceee
Q 004623 181 C-FDKIRV 187 (741)
Q Consensus 181 ~-vdkiRI 187 (741)
+ .|.|=+
T Consensus 232 ~GAd~VMl 239 (352)
T PF00478_consen 232 AGADAVML 239 (352)
T ss_dssp TT-SEEEE
T ss_pred ecccceee
Confidence 3 555544
No 158
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=75.53 E-value=83 Score=34.54 Aligned_cols=180 Identities=18% Similarity=0.252 Sum_probs=103.0
Q ss_pred eEEEceeecCCCCceEEEeccCCCCC-C--HHHHHHHHHHHHHcCCCEEEE----------------ecCCHHHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDTK-D--VAGTVEEVMRIADQGADLVRI----------------TVQGKREADACFE 150 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~-D--v~atv~Qi~~L~~aGceiVRv----------------avp~~~~A~al~~ 150 (741)
.+++|++.+ -|-|+.-.|++.-.. + .+..++--.+.++-|+-+|=. ..-+.+....+++
T Consensus 4 P~~ig~~~l--kNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 81 (353)
T cd02930 4 PLDLGFTTL--RNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRL 81 (353)
T ss_pred CeeECCEEE--ccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHH
Confidence 466777666 677777788632111 1 466677777778778777611 1225678889999
Q ss_pred HHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhc
Q 004623 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (741)
Q Consensus 151 I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~ 230 (741)
+.+.+++.|+. +++=++...+.+. .+.=+-|.++............|+ +|+++|.+.|..-.+.|++.
T Consensus 82 l~~~vh~~g~~--~~~QL~h~G~~~~------~~~~~~ps~~~~~~~~~~p~~mt~----~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 82 ITDAVHAEGGK--IALQILHAGRYAY------HPLCVAPSAIRAPINPFTPRELSE----EEIEQTIEDFARCAALAREA 149 (353)
T ss_pred HHHHHHHcCCE--EEeeccCCCCCCC------CCCCcCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHc
Confidence 99998887764 5555433322211 000123333322111111123343 56667777788888888888
Q ss_pred CC-eEEEeeccCCCcHHHHh--------hcCCCchHHHHHHHHHHHHHHH-CCCCceEEEEecC
Q 004623 231 GR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKAS 284 (741)
Q Consensus 231 g~-~IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~-~~F~diviS~KaS 284 (741)
|- .|=|-.-||-|=..+|+ +||.+.+.=..-+++.++-.++ .| .++.|.+|-|
T Consensus 150 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG-~d~~v~iRi~ 212 (353)
T cd02930 150 GYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVG-EDFIIIYRLS 212 (353)
T ss_pred CCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEec
Confidence 76 56665556655444443 5776555445555566665554 33 3667777766
No 159
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.50 E-value=7 Score=44.33 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cC
Q 004623 119 GTVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvav-p~------------~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vd 183 (741)
+|.++.+.|.++|+|.|++.. |+ .-...++..+.+.+. ..++|+|||-.+. +.-+.+|+.. ++
T Consensus 203 ~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~--~~~vpVIAdGGI~~~~Di~KALalGA~ 280 (404)
T PRK06843 203 VTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCK--NTNICIIADGGIRFSGDVVKAIAAGAD 280 (404)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 567778888999999999763 21 124555555555333 3679999997764 4444466665 66
Q ss_pred ceee
Q 004623 184 KIRV 187 (741)
Q Consensus 184 kiRI 187 (741)
.|=+
T Consensus 281 aVmv 284 (404)
T PRK06843 281 SVMI 284 (404)
T ss_pred EEEE
Confidence 6654
No 160
>PRK00915 2-isopropylmalate synthase; Validated
Probab=75.43 E-value=1.1e+02 Score=35.85 Aligned_cols=115 Identities=10% Similarity=0.129 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceee--cc-CCCHHHHHHHhhhcCceeeC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA--DI-HFAPSVALRVAECFDKIRVN 188 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVA--DI-HF~~~lAl~a~~~vdkiRIN 188 (741)
...++.-++=+..|.++|.+.+=+..| +.++.+.++.|.+.+. +..+.| .. --+-+.|++|...+..-||+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~----~~~i~a~~r~~~~did~a~~a~~~~~~~~v~ 97 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVK----NSTVCGLARAVKKDIDAAAEALKPAEAPRIH 97 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCC----CCEEEEEccCCHHHHHHHHHHhhcCCCCEEE
Confidence 345677777788899999999999876 5678888988877532 233333 22 12345566665443333333
Q ss_pred ---CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC
Q 004623 189 ---PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 189 ---PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 242 (741)
|.+=-... ..+....+.+-+.+.+.|+.||++|.-++++.-.+|
T Consensus 98 i~~~~Sd~h~~----------~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~ 144 (513)
T PRK00915 98 TFIATSPIHME----------YKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDAT 144 (513)
T ss_pred EEECCcHHHHH----------HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 22111101 112223455566677899999999999988875444
No 161
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=74.94 E-value=36 Score=33.54 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE------ecCCHH-HHHHHHHHHHhhccCCcccceeeccCCC--HHHHHHHhhh-cCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRI------TVQGKR-EADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAEC-FDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRv------avp~~~-~A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~-vdk 184 (741)
.|.+.+.++++.+.++||+.+=+ .+|+.. .-+.+++|++. .+.|+++|+=.. .+.+..+.++ +|.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-----~~~~v~v~lm~~~~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-----TDLPIDVHLMVENPDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-----CCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 57889999999999999999998 445433 23445555542 456765432221 2334445555 676
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 239 (741)
|=+ |+..- + ....+++.+|++|+.+-++++
T Consensus 83 v~v-h~~~~--~----------------------~~~~~~~~~~~~g~~~~~~~~ 112 (210)
T TIGR01163 83 ITV-HPEAS--E----------------------HIHRLLQLIKDLGAKAGIVLN 112 (210)
T ss_pred EEE-ccCCc--h----------------------hHHHHHHHHHHcCCcEEEEEC
Confidence 555 33211 1 134567899999988877764
No 162
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=74.79 E-value=28 Score=36.78 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=86.1
Q ss_pred HHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhh
Q 004623 172 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (741)
Q Consensus 172 ~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~ 250 (741)
...+..++++ .+=+=.+||-+.+.. ....+.+.|+++|..+.| -+|.+
T Consensus 75 ~e~~~~aL~aGk~Vvi~s~~Al~d~~----------------------~~~~L~~~A~~~g~~l~v--~sga~------- 123 (265)
T PRK13303 75 KEHVVPILKAGIDCAVISVGALADEA----------------------LRERLEQAAEAGGARLHL--LSGAI------- 123 (265)
T ss_pred HHHHHHHHHcCCCEEEeChHHhcCHH----------------------HHHHHHHHHHHCCCEEEE--eChHh-------
Confidence 3677788887 777777888776522 235688899999998777 22322
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHH-HHHHhhcCCCCccccccccccCCCCCCchhhHHH
Q 004623 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL-LVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIG 329 (741)
Q Consensus 251 yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrl-la~~m~~~g~dyPLHLGVTEAG~~~~G~IKSaiG 329 (741)
-+++.++..+..+++.+.+ +..+++.. +|. .++ .+.| .. .+||.-..+.|..+-+++
T Consensus 124 ----------gg~d~l~~~~~g~~~~v~~--~~~k~p~~---~~~~~~~----~~~d-l~--~~~~~~~~f~G~a~ea~~ 181 (265)
T PRK13303 124 ----------GGIDALAAAKEGGLDEVTY--TGRKPPKS---WRGTPAE----QLCD-LD--ALTEPTVIFEGSAREAAR 181 (265)
T ss_pred ----------hCHHHHHHHHhCCceEEEE--EEecChhH---hCcChhH----hccc-cc--ccccCeEEEEeCHHHHHH
Confidence 2266777777888987776 44554442 221 011 1345 22 478888899999998888
Q ss_pred H--------HHHhhcCCC-ceeEEecCCCCc
Q 004623 330 I--------GTLLQDGLG-DTIRVSLTEPPE 351 (741)
Q Consensus 330 I--------G~LL~~GIG-DTIRVSLT~dP~ 351 (741)
. .++-.-||| |-.+|.|-.||-
T Consensus 182 ~~p~n~nvaaa~~la~~g~d~~~v~~~adp~ 212 (265)
T PRK13303 182 LFPKNANVAATVALAGLGLDRTRVELIADPA 212 (265)
T ss_pred HCCchhhHHHHHHHhccCccceEEEEEECCC
Confidence 6 345558888 889999999993
No 163
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=74.64 E-value=64 Score=39.15 Aligned_cols=210 Identities=14% Similarity=0.112 Sum_probs=119.9
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEE-----------EEe-----cCCHHHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLV-----------RIT-----VQGKREADACFE 150 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~~L~~aGceiV-----------Rva-----vp~~~~A~al~~ 150 (741)
.++||++.+ -|-|++-.|+...+.| .+..++=..+.++-|+-+| |.. .=+.+..+.+++
T Consensus 402 P~~i~~~~l--~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~ 479 (765)
T PRK08255 402 PFRLRGLTL--KNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKR 479 (765)
T ss_pred ccccCCEee--CCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHH
Confidence 477777777 6778888887654444 5666777788888888887 221 115577889999
Q ss_pred HHHhhccC-CcccceeeccCCCHHHHHHHhhh------c--C-ceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhH
Q 004623 151 IKNSLVQK-NYNIPLVADIHFAPSVALRVAEC------F--D-KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (741)
Q Consensus 151 I~~~L~~~-~~~iPLVADIHF~~~lAl~a~~~------v--d-kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~ 220 (741)
|.+...+. |+. +.+=++...+.+.....+ . . ..=+-|..+-.........+.| .+|+++|.+.|
T Consensus 480 ~~~~vh~~gg~~--i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt----~~eI~~~i~~f 553 (765)
T PRK08255 480 IVDFVHANSDAK--IGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMT----RADMDRVRDDF 553 (765)
T ss_pred HHHHHHhcCCce--EEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCC----HHHHHHHHHHH
Confidence 99988887 453 344443333333211100 0 0 0013444432211111123444 44566677777
Q ss_pred HHHHHHHHhcCCe-EEEeeccCCCcH--------HHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh----
Q 004623 221 SPLVEKCKKYGRA-VRIGTNHGSLSD--------RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV---- 287 (741)
Q Consensus 221 ~~vv~~ake~g~~-IRIGvN~GSL~~--------~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~---- 287 (741)
..-.+.|++.|.- |=|=.-||-|-. +--.+||.+.+.-..=.+|-++.+++.==.|+.|++|-|-..
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 7777888887754 333344555533 334568877666667777777777764224778999988321
Q ss_pred -HHHHHHHHHHHHhhcCCCCc
Q 004623 288 -VMVQAYRLLVAEMYVHGWDY 307 (741)
Q Consensus 288 -~~i~Ayrlla~~m~~~g~dy 307 (741)
.+.+-...+++.+.+.|.||
T Consensus 634 g~~~~~~~~~~~~l~~~g~d~ 654 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGADL 654 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCcE
Confidence 11223335555555556664
No 164
>PRK00208 thiG thiazole synthase; Reviewed
Probab=74.51 E-value=32 Score=37.06 Aligned_cols=138 Identities=16% Similarity=0.210 Sum_probs=85.5
Q ss_pred ccCccccccccccccCCCceeEEEceeecCCCCceEEEec--cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH
Q 004623 70 LVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTM--TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADA 147 (741)
Q Consensus 70 ~~~~~~YC~s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSM--t~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~a 147 (741)
++|..--|.+.-...|. -+.+. .++|.+=|-+.=- ..|...|+..|++..+.|.+-|.+.+=+.++|...|++
T Consensus 65 ~lpNTaG~~ta~eAv~~----a~lar-e~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~ 139 (250)
T PRK00208 65 LLPNTAGCRTAEEAVRT----ARLAR-EALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR 139 (250)
T ss_pred ECCCCCCCCCHHHHHHH----HHHHH-HHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 34666677665444321 11111 1234444444433 45567899999998888866666666666666666655
Q ss_pred HHHH-----------------------HHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCCCCCchhhhcccc
Q 004623 148 CFEI-----------------------KNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNFADRRAQFEQL 202 (741)
Q Consensus 148 l~~I-----------------------~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~ 202 (741)
+.+. .+.+++. .++|+|+|-+.. +.-|-.|++. +|.|=+|-+=...++-
T Consensus 140 l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP----- 213 (250)
T PRK00208 140 LEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDP----- 213 (250)
T ss_pred HHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCH-----
Confidence 5432 2233333 679999998886 8888899997 9999999876543221
Q ss_pred ccchHHHHHHHHhHHHhHHHHHHHHHh
Q 004623 203 EYTDDEYQKELQHIEEVFSPLVEKCKK 229 (741)
Q Consensus 203 ~Ytdeey~~ele~I~e~~~~vv~~ake 229 (741)
..+-++|..-|++-+.
T Consensus 214 -----------~~ma~af~~Av~aGr~ 229 (250)
T PRK00208 214 -----------VAMARAFKLAVEAGRL 229 (250)
T ss_pred -----------HHHHHHHHHHHHHHHH
Confidence 2455667777766655
No 165
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=74.29 E-value=13 Score=37.66 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 004623 120 TVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvavp~~~~--A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNi 192 (741)
+.+|+..+.++|+|+|=+-.+.... .+.+.++.+.+++. ..+|++++.| +..-+..+.+. +|-|-+|.+++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~-t~ee~~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS-TLEEGLAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC-CHHHHHHHHHcCCCEEEcCCcee
Confidence 4579999999999988776553110 02223333333333 5799999998 55666777776 88887776554
No 166
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=73.96 E-value=20 Score=40.03 Aligned_cols=92 Identities=8% Similarity=0.095 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccC-CCHHHHHHHhh--hcCceeeCCCCC
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNF 192 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNi 192 (741)
+.+.+++-+++|++ +...+===++ +.+.+.+++++ +++||.+|=. +++.-+..+++ ++|-+++.|..+
T Consensus 225 ~~~~A~~~~~~l~~-~l~~iEeP~~---d~~~~~~L~~~-----~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~ 295 (395)
T cd03323 225 SLETAIRLAKELEG-VLAYLEDPCG---GREGMAEFRRA-----TGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFW 295 (395)
T ss_pred CHHHHHHHHHhcCc-CCCEEECCCC---CHHHHHHHHHh-----cCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccc
Confidence 44455555555555 4433221123 45666667775 7899999944 34444555554 499999999999
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
|.-. .+.++.+.|+++|+++=++.
T Consensus 296 GGit----------------------~~~kia~~A~~~gi~~~~h~ 319 (395)
T cd03323 296 GGMR----------------------GSVRVAQVCETWGLGWGMHS 319 (395)
T ss_pred cCHH----------------------HHHHHHHHHHHcCCeEEEec
Confidence 8743 46789999999999984444
No 167
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.71 E-value=17 Score=39.67 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHc-CCCE-EEEecCC-H--H------------------------HHHHHHHHHHhhccCCcccceee
Q 004623 116 DVAGTVEEVMRIADQ-GADL-VRITVQG-K--R------------------------EADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 116 Dv~atv~Qi~~L~~a-Gcei-VRvavp~-~--~------------------------~A~al~~I~~~L~~~~~~iPLVA 166 (741)
|.+..+++|+++.++ |-++ +|+=++. - + +.+.+..+++ .+++||.+
T Consensus 158 ~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~-----~~~~pia~ 232 (352)
T cd03325 158 KVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAA-----RTTIPIAT 232 (352)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHH-----hCCCCEEe
Confidence 566777777777663 5454 6775543 1 1 2233334444 37899999
Q ss_pred ccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 167 DIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 167 DIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
|=+. +++-+...++ ++|-|++.|+-+|.-. ...++++.|+++|+++=++.
T Consensus 233 dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit----------------------~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 233 GERLFSRWDFKELLEDGAVDIIQPDISHAGGIT----------------------ELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred cccccCHHHHHHHHHhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCcEeccC
Confidence 9764 6666666555 4999999999998744 36789999999999986554
No 168
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=73.68 E-value=56 Score=36.87 Aligned_cols=137 Identities=9% Similarity=0.102 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEe----cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCC
Q 004623 116 DVAGTVEEVMRIADQ--GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 116 Dv~atv~Qi~~L~~a--GceiVRva----vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINP 189 (741)
-+++.+++|..+.+. +..+.++. +|+.-..+.|.+|.+.+++. .++.. .+ ++ =.+-.||
T Consensus 72 y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~-~~~~~-~~-----------~e--itiE~~P 136 (430)
T PRK08208 72 YLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERV-LGVDL-GN-----------IP--KSVETSP 136 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHh-CCCCC-CC-----------ce--EEEEeCc
Confidence 567888888877654 34566765 56655566666666654321 11100 00 01 1356789
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~ 269 (741)
.++-. +.++..++.|+- ||-+--=|++++.+..+|-.. =.+.+.+-++.|
T Consensus 137 ~~lt~---------------------------e~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l 186 (430)
T PRK08208 137 ATTTA---------------------------EKLALLAARGVN-RLSIGVQSFHDSELHALHRPQ--KRADVHQALEWI 186 (430)
T ss_pred CcCCH---------------------------HHHHHHHHcCCC-EEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHH
Confidence 98822 356777788863 666666788899999988321 234666778888
Q ss_pred HHCCCCceEEE----EecCChhHHHHHHHHHH
Q 004623 270 RKLDFHNFLFS----MKASNPVVMVQAYRLLV 297 (741)
Q Consensus 270 e~~~F~diviS----~KaSnv~~~i~Ayrlla 297 (741)
.+.||.+|.+. +---+...+.+..+.+.
T Consensus 187 ~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~ 218 (430)
T PRK08208 187 RAAGFPILNIDLIYGIPGQTHASWMESLDQAL 218 (430)
T ss_pred HHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 99999765444 43444444444444443
No 169
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=73.36 E-value=8.7 Score=43.60 Aligned_cols=65 Identities=23% Similarity=0.399 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHhhccCCcccceeeccCCC--HHHHHHHhhh-cC
Q 004623 120 TVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAEC-FD 183 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvav-p~------------~~~A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~-vd 183 (741)
|.++.+.|.++|||.|+|.+ |+ ...+.++.++.+.+++ +++|+|||-... -.++ +|+.. ++
T Consensus 275 t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~--~~vpviadGGi~~~~di~-kAla~GA~ 351 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQ--SGIPVIADGGIRYSGDIV-KALAAGAD 351 (450)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHH-HHHHcCCC
Confidence 34555667899999999874 22 2345666666665433 569999985444 3333 55554 55
Q ss_pred ceee
Q 004623 184 KIRV 187 (741)
Q Consensus 184 kiRI 187 (741)
.+=+
T Consensus 352 ~V~~ 355 (450)
T TIGR01302 352 AVML 355 (450)
T ss_pred EEEE
Confidence 5544
No 170
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=73.22 E-value=89 Score=35.13 Aligned_cols=204 Identities=19% Similarity=0.210 Sum_probs=124.4
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC----HHHHHHHHHHHHHcCCCEEEEe--cCC--------------HHHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD----VAGTVEEVMRIADQGADLVRIT--VQG--------------KREADACF 149 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~D----v~atv~Qi~~L~~aGceiVRva--vp~--------------~~~A~al~ 149 (741)
.+++|++.+ -|-|++..||.-...+ .+..++=-.+.++-|+-++=++ +.+ .+..+.++
T Consensus 9 P~~lg~~~L--~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~ 86 (363)
T COG1902 9 PLKLGGLTL--KNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLK 86 (363)
T ss_pred CeeECCEEe--ccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHH
Confidence 477888888 8999999998866642 6777888888888555543332 222 23489999
Q ss_pred HHHHhhccCCcccceeeccCCCHHHHHHHhhh------cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHH
Q 004623 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAEC------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 223 (741)
Q Consensus 150 ~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~------vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 223 (741)
++.+...+.|. .++.=||-..+.|....-. -..++..++. ....++.|+ +|+++|.+.|..=
T Consensus 87 ~vt~avH~~G~--~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~------~~~pr~mt~----~eI~~ii~~f~~A 154 (363)
T COG1902 87 RLTEAVHAHGA--KIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGR------RATPRELTE----EEIEEVIEDFARA 154 (363)
T ss_pred HHHHHHHhcCC--eEEEEeccCcccccccccCCCcccCCCccccccCC------CCCCccCCH----HHHHHHHHHHHHH
Confidence 99999999887 6677777766554322211 1222222220 122333443 4566777777777
Q ss_pred HHHHHhcCC-eEEEeeccCCCcHHHHh--------hcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh------H
Q 004623 224 VEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV------V 288 (741)
Q Consensus 224 v~~ake~g~-~IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~------~ 288 (741)
.+.||+-|- -|-|=--||-|=..+++ +||.+.|.-..=++|-++-.++.==.++.|.++-|-.. .
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~ 234 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGL 234 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence 777777764 35555668888777766 57766665555555555544442222325555554211 2
Q ss_pred HHHHHHHHHHHhhcCC-CCc
Q 004623 289 MVQAYRLLVAEMYVHG-WDY 307 (741)
Q Consensus 289 ~i~Ayrlla~~m~~~g-~dy 307 (741)
.++-+..+++.+.+.| +||
T Consensus 235 ~~~e~~~la~~L~~~G~~d~ 254 (363)
T COG1902 235 TIEEAVELAKALEEAGLVDY 254 (363)
T ss_pred CHHHHHHHHHHHHhcCCccE
Confidence 4556667777777777 566
No 171
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=72.91 E-value=1.3e+02 Score=31.87 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCH---------HH--H---------HHHHHHHHhhccCCcccceeeccCCCH---
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGK---------RE--A---------DACFEIKNSLVQKNYNIPLVADIHFAP--- 172 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~---------~~--A---------~al~~I~~~L~~~~~~iPLVADIHF~~--- 172 (741)
|.+.|++=++.|.++|||++=+-+|-- +. - +.+-++.+++++..+++|++--.=+|+
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 889999999999999999999999861 11 1 122234444565567899985555555
Q ss_pred ----HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC
Q 004623 173 ----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 173 ----~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 242 (741)
+...++.++ ++.|=|..--+ +...++++.||++|+..=.=+|-.+
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDlp~-------------------------ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADLPL-------------------------EESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCh-------------------------HHHHHHHHHHHHCCCcEEEEECCCC
Confidence 445566666 77776652211 1256799999999987533454444
No 172
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=72.24 E-value=26 Score=38.41 Aligned_cols=110 Identities=11% Similarity=0.012 Sum_probs=77.8
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl 176 (741)
+|.+..+.|= .| ..-|.+.+++=+++|++.|...+==-+| .++.+.+.+++++ +++|+.+|=++ +++-+.
T Consensus 160 ~G~~~~l~vD--aN-~~w~~~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~L~~~-----~~~pia~gE~~~~~~~~~ 230 (361)
T cd03322 160 FGFEFHLLHD--VH-HRLTPNQAARFGKDVEPYRLFWMEDPTP-AENQEAFRLIRQH-----TATPLAVGEVFNSIWDWQ 230 (361)
T ss_pred cCCCceEEEE--CC-CCCCHHHHHHHHHHhhhcCCCEEECCCC-cccHHHHHHHHhc-----CCCCEEeccCCcCHHHHH
Confidence 5666677662 23 2345666777777788777766543232 2446677777775 88999999775 556655
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 177 ~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
..++ ++|-+.+.|+-+|.-. ...++.+.|+++|+++-++.
T Consensus 231 ~~i~~~a~di~~~d~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 231 NLIQERLIDYIRTTVSHAGGIT----------------------PARKIADLASLYGVRTGWHG 272 (361)
T ss_pred HHHHhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeeeccC
Confidence 5555 4999999999998743 36789999999999997654
No 173
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=72.20 E-value=15 Score=39.74 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=47.3
Q ss_pred HHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 146 DACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 146 ~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
..+.++++ .+++|+.+|=+.. ..-....++ ++|-+.|.|..+|.-. .+.+
T Consensus 218 ~~~~~l~~-----~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit----------------------~~~~ 270 (354)
T cd03317 218 IDHAELQK-----LLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLT----------------------EALK 270 (354)
T ss_pred HHHHHHHh-----hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHH----------------------HHHH
Confidence 34445554 3789999998743 433334444 4899999999999844 4678
Q ss_pred HHHHHHhcCCeEEEe
Q 004623 223 LVEKCKKYGRAVRIG 237 (741)
Q Consensus 223 vv~~ake~g~~IRIG 237 (741)
+...|+.+|+++=+|
T Consensus 271 i~~~A~~~gi~~~~g 285 (354)
T cd03317 271 IHDLCQEHGIPVWCG 285 (354)
T ss_pred HHHHHHHcCCcEEec
Confidence 999999999998654
No 174
>PRK02227 hypothetical protein; Provisional
Probab=72.19 E-value=23 Score=37.90 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=78.3
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHcCCCEEEEecCCHHHH----HHHHHHHHhhccCCcccceeeccCCCHH---------
Q 004623 108 TMTTNDT-KDVAGTVEEVMRIADQGADLVRITVQGKREA----DACFEIKNSLVQKNYNIPLVADIHFAPS--------- 173 (741)
Q Consensus 108 SMt~t~T-~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A----~al~~I~~~L~~~~~~iPLVADIHF~~~--------- 173 (741)
|.|-.|- .+.......+...+..|+|+|-|-....... +.+..+.+.+....-+..+||-...|+.
T Consensus 56 SAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~ 135 (238)
T PRK02227 56 SATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLS 135 (238)
T ss_pred eeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHH
Confidence 4555542 2344455668889999999999998654332 4455555555656667888866665543
Q ss_pred HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHH
Q 004623 174 VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI 247 (741)
Q Consensus 174 lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~i 247 (741)
+.-.++++ ++.+=|--.. .|+..-|+... .+.+.++|+.|+++|.-. |. .|||...-
T Consensus 136 l~~~a~~aGf~g~MlDTa~-Kdg~~Lfd~l~-------------~~~L~~Fv~~ar~~Gl~~--gL-AGSL~~~d 193 (238)
T PRK02227 136 LPAIAADAGFDGAMLDTAI-KDGKSLFDHMD-------------EEELAEFVAEARSHGLMS--AL-AGSLKFED 193 (238)
T ss_pred HHHHHHHcCCCEEEEeccc-CCCcchHhhCC-------------HHHHHHHHHHHHHcccHh--Hh-cccCchhh
Confidence 33344454 7777664332 22333455544 456888999999999876 66 89997643
No 175
>TIGR03586 PseI pseudaminic acid synthase.
Probab=72.10 E-value=1.2e+02 Score=33.65 Aligned_cols=138 Identities=12% Similarity=0.163 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH-----------------------------------HHHHHHHHhhccC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREA-----------------------------------DACFEIKNSLVQK 158 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A-----------------------------------~al~~I~~~L~~~ 158 (741)
-.|++-..+=|...+++|||.|++-+-..+.- +.|.+.++
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~----- 87 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAK----- 87 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHH-----
Confidence 35788888888889999999998875443331 12333333
Q ss_pred CcccceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 159 NYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 159 ~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
...++.++..+- ..-+....+. ++-+-|--||+-+ -++++.+-+.|+||=+.
T Consensus 88 ~~Gi~~~stpfd-~~svd~l~~~~v~~~KI~S~~~~n--------------------------~~LL~~va~~gkPvils 140 (327)
T TIGR03586 88 ELGLTIFSSPFD-ETAVDFLESLDVPAYKIASFEITD--------------------------LPLIRYVAKTGKPIIMS 140 (327)
T ss_pred HhCCcEEEccCC-HHHHHHHHHcCCCEEEECCccccC--------------------------HHHHHHHHhcCCcEEEE
Confidence 267899998754 4444444555 8999999999965 35888888899999766
Q ss_pred eccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEE-EE----ecCChhHHHHHHHHHHHH
Q 004623 238 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF-SM----KASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 238 vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi-S~----KaSnv~~~i~Ayrlla~~ 299 (741)
+-..+ ..-++.|++++ ++.|-++|++ -+ -+..-..-+.+-..|.++
T Consensus 141 tG~~t-------------~~Ei~~Av~~i---~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~ 191 (327)
T TIGR03586 141 TGIAT-------------LEEIQEAVEAC---REAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAER 191 (327)
T ss_pred CCCCC-------------HHHHHHHHHHH---HHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHH
Confidence 63322 34566777766 4677777777 12 111222235666667776
No 176
>PRK12677 xylose isomerase; Provisional
Probab=71.56 E-value=32 Score=38.64 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC--------CHHHHHHHHHHHHhhccCCcccceeeccCC-------------C
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQ--------GKREADACFEIKNSLVQKNYNIPLVADIHF-------------A 171 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp--------~~~~A~al~~I~~~L~~~~~~iPLVADIHF-------------~ 171 (741)
++.|.+. -+.+++++|.+-|=+--+ ..+....+++|++.|.+.|..|+.|+==.| |
T Consensus 29 ~~~~~~E---~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d 105 (384)
T PRK12677 29 PPLDPVE---AVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSND 105 (384)
T ss_pred CCCCHHH---HHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCC
Confidence 3445554 456677788887766532 222234689999999999999887641111 2
Q ss_pred H---HHHH----H----Hhhh-cCceeeCCCCCCchhhhccccccc-hHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 172 P---SVAL----R----VAEC-FDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 172 ~---~lAl----~----a~~~-vdkiRINPGNig~~~k~f~~~~Yt-deey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
+ +.|+ . |.+. +..|.+.||-.|.. |. ...|.+.+++..+.+.++.+.|+++|--|||++
T Consensus 106 ~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~--------~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 106 RDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAE--------YDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCcc--------CcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2 2222 2 3333 88899999965441 21 345778889999999999999999887778886
Q ss_pred ccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCc-eEEEE
Q 004623 239 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FLFSM 281 (741)
Q Consensus 239 N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~d-iviS~ 281 (741)
= ..-.+ +.+..++.+.-+.++++++.|-.+ +-+-+
T Consensus 178 E-----pkp~e---p~~~~~l~t~~~al~li~~lg~~~~vGv~l 213 (384)
T PRK12677 178 E-----PKPNE---PRGDILLPTVGHALAFIATLEHPEMVGLNP 213 (384)
T ss_pred c-----cCCCC---CCCCeeeCCHHHHHHHHHHhCCCccEEEee
Confidence 2 21000 111335555555666777777554 55664
No 177
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=71.52 E-value=35 Score=37.04 Aligned_cols=136 Identities=19% Similarity=0.318 Sum_probs=83.4
Q ss_pred eeecCCCCce-EEEeccCCCCCCH-HHHHHHHHHH-HHcCCCEEEEec--------------CC-HHHHHHHHHHHHhhc
Q 004623 95 NVAIGSEHPI-RVQTMTTNDTKDV-AGTVEEVMRI-ADQGADLVRITV--------------QG-KREADACFEIKNSLV 156 (741)
Q Consensus 95 ~V~IGG~~PI-~VQSMt~t~T~Dv-~atv~Qi~~L-~~aGceiVRvav--------------p~-~~~A~al~~I~~~L~ 156 (741)
++.|||+.|+ .|==-+.-.+.+. -.+.+.++++ ++.|...++=+. ++ .+--+-|.+++++
T Consensus 2 ~~~ig~~~~~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~-- 79 (264)
T PRK05198 2 DIEVGNDLPFFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKET-- 79 (264)
T ss_pred CeeeCCCCceEEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHH--
Confidence 5778888665 3333333333332 2233333332 224454555421 24 5778888999997
Q ss_pred cCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 157 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 157 ~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
+.+|+|.|+|-... +..+++.+|=+-|--=|.-. .++++++.+.|+||=
T Consensus 80 ---~GlpvvTeV~~~~~-~~~v~~~~DilQIgArn~rn--------------------------~~LL~a~g~t~kpV~- 128 (264)
T PRK05198 80 ---FGVPVLTDVHEPEQ-AAPVAEVVDVLQIPAFLCRQ--------------------------TDLLVAAAKTGKVVN- 128 (264)
T ss_pred ---HCCceEEEeCCHHH-HHHHHhhCcEEEECchhcch--------------------------HHHHHHHhccCCeEE-
Confidence 88999999997555 45777889999997767622 248888888899882
Q ss_pred eeccCCCcHHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCceEE
Q 004623 237 GTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 237 GvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~divi 279 (741)
++| | -+|+.|.-+|. .+...|=++|++
T Consensus 129 -----------lKr-G~~~t~~e~~~aae----yi~~~Gn~~vil 157 (264)
T PRK05198 129 -----------IKK-GQFLAPWDMKNVVD----KVREAGNDKIIL 157 (264)
T ss_pred -----------ecC-CCcCCHHHHHHHHH----HHHHcCCCeEEE
Confidence 233 4 57877765543 344455555554
No 178
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=71.35 E-value=1.6e+02 Score=31.94 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--------HHHHHHHHHHHHhhccCCcccceeeccCC--CHHHHHHHhhhcCce
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQG--------KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDKI 185 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~--------~~~A~al~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~vdki 185 (741)
+.+..+++++++.++|.+.+.+-+-. .++.+.+..|++. .|-+++|..|.+- +..-|++.++.+++.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 215 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLMVDANGRWDLAEAIRLARALEEY 215 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 68889999999999999999997642 4567778888775 3457899999974 455666665656554
No 179
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=71.34 E-value=32 Score=36.99 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=77.6
Q ss_pred ccCccccccccccccCCCceeEEEceeecCCCCceEEEeccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH
Q 004623 70 LVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADA 147 (741)
Q Consensus 70 ~~~~~~YC~s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~a 147 (741)
++|..--|.+.-...|- -+.+. .++|.+=|-+.=... |-..|+..|++..+.|.+-|.+.+=+.++|...|++
T Consensus 65 ~lpNTaG~~ta~eAv~~----a~lar-e~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~ 139 (248)
T cd04728 65 LLPNTAGCRTAEEAVRT----ARLAR-EALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKR 139 (248)
T ss_pred ECCCCCCCCCHHHHHHH----HHHHH-HHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 34666667665444321 11111 244566666665544 446899999998888877777777677777666666
Q ss_pred HHHH-----------------------HHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCCCCC
Q 004623 148 CFEI-----------------------KNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNFA 193 (741)
Q Consensus 148 l~~I-----------------------~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPGNig 193 (741)
|.+. -+.+++. .++|+|+|-+.. +.-|-.|++. +|.|=+|-+=..
T Consensus 140 l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 140 LEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred HHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 5432 2233433 679999998876 7888899997 999999977553
No 180
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=71.32 E-value=30 Score=37.56 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=42.7
Q ss_pred cccceeeccCC-CHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 160 YNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 160 ~~iPLVADIHF-~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
+++|+.+|=.+ ++.........++-|.|-|+.+|+-. ...++++.|+.+|+++=+|.
T Consensus 208 ~~~PIa~DEs~~~~~~~~~~~~~~d~i~ik~~k~GGi~----------------------~a~~i~~~A~~~gi~~~~~~ 265 (322)
T PRK05105 208 TGIAIAWDESLREPDFQFEAEPGVRAIVIKPTLTGSLE----------------------KCQELIEQAHALGLRAVISS 265 (322)
T ss_pred CCCCEEECCCCCchhhhhhhcCCCCEEEECccccCCHH----------------------HHHHHHHHHHHcCCcEEEEC
Confidence 78999999654 23322222334889999999999844 36789999999999998874
No 181
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=71.29 E-value=51 Score=33.81 Aligned_cols=171 Identities=17% Similarity=0.205 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHcCCC---EEEEecC---CHHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCC
Q 004623 119 GTVEEVMRIADQGAD---LVRITVQ---GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPG 190 (741)
Q Consensus 119 atv~Qi~~L~~aGce---iVRvavp---~~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPG 190 (741)
..++-++++.++|++ ++=++.. .....+.+++|++. .++|++++--.. ..-+...++. ++.+=+|=+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-----VFIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 455667778899999 5555532 12234566667664 679999886554 4556666665 888877766
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec--c-----CCCcHHHHhhcCCCchHHHHHHH
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--H-----GSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN--~-----GSL~~~il~~yg~t~~amVeSAl 263 (741)
.+.+.+ .+.++++.+.... |-++++ + |++.-+ -+. +.--+++.
T Consensus 103 ~~~~p~----------------------~~~~i~~~~~~~~--i~~~ld~k~~~~~~~~v~~~----~~~--~~~~~~~~ 152 (243)
T cd04731 103 AVENPE----------------------LIREIAKRFGSQC--VVVSIDAKRRGDGGYEVYTH----GGR--KPTGLDAV 152 (243)
T ss_pred hhhChH----------------------HHHHHHHHcCCCC--EEEEEEeeecCCCceEEEEc----CCc--eecCCCHH
Confidence 664432 2444555443222 333332 1 222111 110 11123457
Q ss_pred HHHHHHHHCCCCceEEEEecCChh---HHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHHHHHhhc-CC
Q 004623 264 EFARICRKLDFHNFLFSMKASNPV---VMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD-GL 338 (741)
Q Consensus 264 e~~~i~e~~~F~diviS~KaSnv~---~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IKSaiGIG~LL~~-GI 338 (741)
++++.+++.|++.|.++--..+.. .-.+.++.+.+. .+.|+ -..|-|.|.--+-.+|.. |+
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~-----~~~pv---------ia~GGi~~~~di~~~l~~~g~ 217 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA-----VNIPV---------IASGGAGKPEHFVEAFEEGGA 217 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh-----CCCCE---------EEeCCCCCHHHHHHHHHhCCC
Confidence 888999999999999976443210 112334444444 56665 345667777777777765 44
No 182
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=71.29 E-value=72 Score=33.32 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC------HHHHH--------------HHHHHHHhhccCCcccceeeccCCCH--
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG------KREAD--------------ACFEIKNSLVQKNYNIPLVADIHFAP-- 172 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~------~~~A~--------------al~~I~~~L~~~~~~iPLVADIHF~~-- 172 (741)
-|.+.+.+.+++|+++|||++=+-+|- -...+ ...++.+++++. +++|++-=.-+|+
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecCHHH
Confidence 377899999999999999999999443 22222 344555556654 3788543112242
Q ss_pred -----HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCC
Q 004623 173 -----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (741)
Q Consensus 173 -----~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL 243 (741)
+.+..+.++ ++.|=|.-= +. |.+.++++.||++|+..=+-+|-.+-
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl------------------------~~-ee~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDL------------------------PP-EEAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCC------------------------CH-HHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 334455565 666655310 01 13677999999999876555654443
No 183
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=71.18 E-value=22 Score=41.13 Aligned_cols=97 Identities=14% Similarity=0.265 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHhhccCCc-ccceee-ccCCCHHHHHHHhhh-cCcee--eCCCCC
Q 004623 121 VEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNY-NIPLVA-DIHFAPSVALRVAEC-FDKIR--VNPGNF 192 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvav---p~~~~A~al~~I~~~L~~~~~-~iPLVA-DIHF~~~lAl~a~~~-vdkiR--INPGNi 192 (741)
.+.+..|.++|+++|=+-+ ++....+.+++||+. + ++|+|| |+= .+.-|..++++ +|.|+ |-||-|
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~-----~p~~~v~agnv~-t~~~a~~l~~aGad~v~vgig~gsi 302 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRAL-----DPGVPIVAGNVV-TAEGTRDLVEAGADIVKVGVGPGAM 302 (479)
T ss_pred HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHH-----CCCCeEEeeccC-CHHHHHHHHHcCCCEEEECccCCcc
Confidence 4678889999999976643 345666778888875 5 599999 774 57888888887 99888 778766
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
=-- ..||..-+ -.+ ..+.++.++|+++++|+
T Consensus 303 ctt------~~~~~~~~-p~~----~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 303 CTT------RMMTGVGR-PQF----SAVLECAAAARELGAHV 333 (479)
T ss_pred ccc------ccccCCch-hHH----HHHHHHHHHHHhcCCcE
Confidence 321 12332222 111 23555777777888887
No 184
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=70.13 E-value=52 Score=36.13 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-C-HHHHHHHhh--hcCceeeCCCC
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-A-PSVALRVAE--CFDKIRVNPGN 191 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~-~~lAl~a~~--~vdkiRINPGN 191 (741)
|.+.+++=+++|++.|-..+==-++ ..+.+.+.+|+++ +++|+.+|=++ + +.-+...++ ++|-|.+.|+.
T Consensus 201 ~~~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~l~~~-----~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~ 274 (368)
T cd03329 201 SRADALRLGRALEELGFFWYEDPLR-EASISSYRWLAEK-----LDIPILGTEHSRGALESRADWVLAGATDFLRADVNL 274 (368)
T ss_pred CHHHHHHHHHHhhhcCCCeEeCCCC-chhHHHHHHHHhc-----CCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccc
Confidence 4445555555555555433321122 1223555566664 78999999875 3 454444444 49999999999
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
+|.-. ...++...|.++|+++=++
T Consensus 275 ~GGit----------------------~~~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 275 VGGIT----------------------GAMKTAHLAEAFGLDVELH 298 (368)
T ss_pred cCCHH----------------------HHHHHHHHHHHcCCEEEEE
Confidence 98844 3678999999999998553
No 185
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.12 E-value=27 Score=36.46 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=43.3
Q ss_pred cccceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 160 YNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 160 ~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
+++|+.+|=++ +..-+...++ ++|-+.+-|..+|.-. ...++++.|+++|+++=+
T Consensus 175 ~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~a~~~gi~~~~ 232 (263)
T cd03320 175 AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPR----------------------ALLELAEEARARGIPAVV 232 (263)
T ss_pred cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHH----------------------HHHHHHHHHHHcCCCEEE
Confidence 67999999553 2222333344 5899999999998744 367899999999999988
Q ss_pred eec
Q 004623 237 GTN 239 (741)
Q Consensus 237 GvN 239 (741)
|..
T Consensus 233 ~~~ 235 (263)
T cd03320 233 SSA 235 (263)
T ss_pred Ecc
Confidence 843
No 186
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=70.05 E-value=11 Score=41.52 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCEEEEe-------cCCHH--------HHHHHHHHHHhhccCCcccceeec--cCCCHHHHHHHhhh-
Q 004623 120 TVEEVMRIADQGADLVRIT-------VQGKR--------EADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC- 181 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRva-------vp~~~--------~A~al~~I~~~L~~~~~~iPLVAD--IHF~~~lAl~a~~~- 181 (741)
|.+..+.|.++|||++++. +.... ...++.++++. .++|+||| |+....++ +|+..
T Consensus 150 t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-----~~ipVIAdGGI~~~~Di~-KaLa~G 223 (326)
T PRK05458 150 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-----ARKPIIADGGIRTHGDIA-KSIRFG 223 (326)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-----cCCCEEEeCCCCCHHHHH-HHHHhC
Confidence 7788899999999999865 11111 34567777775 46999999 55544444 56654
Q ss_pred cCceeeC
Q 004623 182 FDKIRVN 188 (741)
Q Consensus 182 vdkiRIN 188 (741)
++.+-+-
T Consensus 224 A~aV~vG 230 (326)
T PRK05458 224 ATMVMIG 230 (326)
T ss_pred CCEEEec
Confidence 7777653
No 187
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=70.03 E-value=1.3e+02 Score=34.97 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeec-cCCCHHHHHHHhhhcCceeeCCC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAECFDKIRVNPG 190 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVAD-IHF~~~lAl~a~~~vdkiRINPG 190 (741)
...++.-++=++.|.++|.+.+=+..| +..+.+.++.|.+.+. +..+-..+. -.-+-+.|++|+..++.-||+=-
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~al~r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVCGLARCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEEEEcCCCHHhHHHHHHhccccCCCEEEEE
Confidence 356677788888999999999999876 4678888888876532 122211122 12233555555543333343211
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e 270 (741)
.-.+.-.. ...+..-.+.+-+.+.+.|+.||++|..++++.-.+|- ++ .+-+++.++.+.
T Consensus 97 ~~~S~~h~-------~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r----------~d---~~~l~~~~~~~~ 156 (494)
T TIGR00973 97 IATSPIHL-------EHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGR----------TE---IPFLARIVEAAI 156 (494)
T ss_pred EccCHHHH-------HHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC----------CC---HHHHHHHHHHHH
Confidence 11110000 01122234555667778999999999988888643332 11 234455555566
Q ss_pred HCCCCceEEEEecC
Q 004623 271 KLDFHNFLFSMKAS 284 (741)
Q Consensus 271 ~~~F~diviS~KaS 284 (741)
+.|-+ .|++..+
T Consensus 157 ~~Ga~--~i~l~DT 168 (494)
T TIGR00973 157 NAGAT--TINIPDT 168 (494)
T ss_pred HcCCC--EEEeCCC
Confidence 66654 3444443
No 188
>PRK07534 methionine synthase I; Validated
Probab=69.88 E-value=26 Score=38.70 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchh
Q 004623 118 AGTVEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR 196 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRv-avp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~ 196 (741)
+.--.|+..|.++|+|++=+ |.|+.++++++-+..+. .++|++.=+-|+ +-|.+-++.
T Consensus 131 ~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~-----~~~Pv~vSft~~----------------~~g~l~~G~ 189 (336)
T PRK07534 131 EAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKL-----AGMPWCGTMSFD----------------TAGRTMMGL 189 (336)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHH-----cCCeEEEEEEEC----------------CCCeeCCCC
Confidence 34458899999999999999 79999999988877764 468888544332 113444433
Q ss_pred hhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC-CeEEEeeccCC
Q 004623 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGTNHGS 242 (741)
Q Consensus 197 k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g-~~IRIGvN~GS 242 (741)
.++++++..++.+ .+.=||+|+++
T Consensus 190 ----------------------~~~~~~~~~~~~~~~~~avGvNC~~ 214 (336)
T PRK07534 190 ----------------------TPADLADLVEKLGEPPLAFGANCGV 214 (336)
T ss_pred ----------------------cHHHHHHHHHhcCCCceEEEecCCC
Confidence 2455666666554 34668999986
No 189
>PRK05660 HemN family oxidoreductase; Provisional
Probab=69.83 E-value=43 Score=37.14 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHH----cCCCEEEEe--cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCC
Q 004623 117 VAGTVEEVMRIAD----QGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG 190 (741)
Q Consensus 117 v~atv~Qi~~L~~----aGceiVRva--vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPG 190 (741)
+++-++||..-.. .+.+-|-+. +|+.-.++.|.+|-+.+++. .|+.-|..| .+=.||+
T Consensus 40 ~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~---~~~~~~~ei-------------t~e~np~ 103 (378)
T PRK05660 40 VDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGVRAR---LPFAPDAEI-------------TMEANPG 103 (378)
T ss_pred HHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHHHHHHh---CCCCCCcEE-------------EEEeCcC
Confidence 6777778764222 345556664 77776677777777655431 233222211 1234999
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e 270 (741)
.+-. +.++..|+.|+- ||-+.-=|+++++++..|.. .-++.+++.++.+.
T Consensus 104 ~l~~---------------------------e~l~~Lk~~Gv~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~ 153 (378)
T PRK05660 104 TVEA---------------------------DRFVGYQRAGVN-RISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQ 153 (378)
T ss_pred cCCH---------------------------HHHHHHHHcCCC-EEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 9832 246777888875 88888889999999998732 12556777788889
Q ss_pred HCCCCceEEEEec
Q 004623 271 KLDFHNFLFSMKA 283 (741)
Q Consensus 271 ~~~F~diviS~Ka 283 (741)
+.||.+|.+.+=.
T Consensus 154 ~~G~~~v~~dli~ 166 (378)
T PRK05660 154 GLGLRSFNLDLMH 166 (378)
T ss_pred HcCCCeEEEEeec
Confidence 9999876555543
No 190
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=69.76 E-value=1.6e+02 Score=31.28 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=91.2
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHh
Q 004623 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (741)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~--~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~ 179 (741)
-|+-|.=|.+. --..|..++++||++|=+-+-.. .-.+.+..||+ .|...=|.=.-+=.......-+
T Consensus 60 ~~~DvHLMv~~-------P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~----~G~kaGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 60 KPLDVHLMVTD-------PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRR----AGMKVGLVLNPETPVESIKYYI 128 (229)
T ss_pred CCeEEEEEecC-------HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHH----cCCCEEEEeCCCCCHHHHHHHH
Confidence 57777878764 34578889999999887765521 23456666666 4765444333332223333333
Q ss_pred hhcCce---eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCch
Q 004623 180 ECFDKI---RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (741)
Q Consensus 180 ~~vdki---RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~ 256 (741)
..+|.| =+|||.=|- +|... .-+|++++-+..+++|..+.|.|. |.++..
T Consensus 129 ~~vD~VLvMsV~PGf~GQ---~fi~~-------------~l~KI~~lr~~~~~~~~~~~IeVD-GGI~~~---------- 181 (229)
T PRK09722 129 HLLDKITVMTVDPGFAGQ---PFIPE-------------MLDKIAELKALRERNGLEYLIEVD-GSCNQK---------- 181 (229)
T ss_pred HhcCEEEEEEEcCCCcch---hccHH-------------HHHHHHHHHHHHHhcCCCeEEEEE-CCCCHH----------
Confidence 445554 479987764 23322 233444566666788888999994 445432
Q ss_pred HHHHHHHHHHHHHHHCCCCceEEE---E-e-cCChhHHHHHHHHHHHH
Q 004623 257 GMVESAFEFARICRKLDFHNFLFS---M-K-ASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 257 amVeSAle~~~i~e~~~F~diviS---~-K-aSnv~~~i~Ayrlla~~ 299 (741)
.+..|.+.|-+-+|+. + | ..|...+++..|...++
T Consensus 182 --------~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~ 221 (229)
T PRK09722 182 --------TYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEA 221 (229)
T ss_pred --------HHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4556667777777654 2 4 35677777777765443
No 191
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=69.51 E-value=27 Score=37.17 Aligned_cols=140 Identities=15% Similarity=0.263 Sum_probs=84.4
Q ss_pred cCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC------Cccccee--e-
Q 004623 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK------NYNIPLV--A- 166 (741)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~------~~~iPLV--A- 166 (741)
|||+ -+.|+++. +.|..+.+-+..|+++|.+| |+|=..=.+.|. -+..+.+.+... .-.++++ .
T Consensus 34 I~Gd-~v~V~~Lip~g~dPH~ye~~p~d~~~l~~A--dlvv~~G~~~E~--wl~~~~~~~~~~~~~v~~~~~i~~~~~~~ 108 (287)
T cd01137 34 IAGD-RVNVTSIVPPGADPHEYEPTPSDIKKLSKA--DLILYNGLNLEP--WLERLVKNAGKDVPVVAVSEGIDPIPLEE 108 (287)
T ss_pred HcCC-eeEEEEecCCCCCccCCCCCHHHHHHHHhC--CEEEEcCCCcHH--HHHHHHHhcCCCCcEEEecCCccccccCc
Confidence 5655 48888886 46779999999999999965 666444345552 566665544211 0012221 0
Q ss_pred -------ccC--CCHHHHHHHhhh-cCce-eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE
Q 004623 167 -------DIH--FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (741)
Q Consensus 167 -------DIH--F~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 235 (741)
|=| +||..+...++. .+++ ++.|.|=.. |+. .-+.|.++|+.++++++..+..+++.+++
T Consensus 109 ~~~~~~~dPH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~----y~~---N~~~~~~~L~~l~~~~~~~l~~~~~~~~~-- 179 (287)
T cd01137 109 GHYKGKPDPHAWMSPKNAIIYVKNIAKALSEADPANAET----YQK---NAAAYKAKLKALDEWAKAKFATIPAEKRK-- 179 (287)
T ss_pred cccCCCCCCCcCcCHHHHHHHHHHHHHHHHHHCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHHhcCCcccCE--
Confidence 222 456667666665 4443 678977321 111 13568888888888888777765544444
Q ss_pred EeeccCCCcHHHHhhcC
Q 004623 236 IGTNHGSLSDRIMSYYG 252 (741)
Q Consensus 236 IGvN~GSL~~~il~~yg 252 (741)
+=+-|-++ ..+.++||
T Consensus 180 ~v~~H~af-~Y~~~~yG 195 (287)
T cd01137 180 LVTSEGAF-SYFAKAYG 195 (287)
T ss_pred EEEecccH-HHHHHHcC
Confidence 35667666 45666666
No 192
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=69.48 E-value=61 Score=34.01 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=58.4
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~ 177 (741)
+|+..|+.+|.. ..|.++.++|-++|.+.+-.++ |-+|--.+ .++.|+. |.++|+++- +=-=|...-|+.
T Consensus 50 ~~~~~~v~~Qv~----~~d~e~mi~ea~~l~~~~~ni~-IKIP~T~~--Gl~A~~~-L~~~GI~vn--~T~vfs~~Qa~~ 119 (220)
T PRK12653 50 MGGQGRLFAQVM----ATTAEGMVNDARKLRSIIADIV-VKVPVTAE--GLAAIKM-LKAEGIPTL--GTAVYGAAQGLL 119 (220)
T ss_pred hCCCCcEEEEEe----cCCHHHHHHHHHHHHHhCCCEE-EEeCCCHH--HHHHHHH-HHHcCCCee--EEEecCHHHHHH
Confidence 456679999996 4789999999999999987754 77886655 3555554 555675544 444688999998
Q ss_pred Hhhh-cCceeeC
Q 004623 178 VAEC-FDKIRVN 188 (741)
Q Consensus 178 a~~~-vdkiRIN 188 (741)
|+++ ++=|-..
T Consensus 120 Aa~aGa~yIspy 131 (220)
T PRK12653 120 SALAGAEYVAPY 131 (220)
T ss_pred HHhcCCcEEEee
Confidence 8886 6555443
No 193
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.45 E-value=56 Score=34.02 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig 193 (741)
..|.+.+++-++.|.+.|.+++=||..+.+..++++.++++. -++-+-||.=.+..-|..|+++=.++=+-|| +
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~----p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~-~- 96 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV----PEALIGAGTVLNPEQLAQAIEAGAQFIVSPG-L- 96 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC----CCCEEEEeeccCHHHHHHHHHcCCCEEECCC-C-
Confidence 467899999999999999999999999999999999999862 2477999999999999999987455667785 3
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCC
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~ 273 (741)
+ .++++.|++++++.==|+ -||.. +.-+.++|
T Consensus 97 ~--------------------------~~vi~~a~~~~i~~iPG~--------------~TptE--------i~~a~~~G 128 (212)
T PRK05718 97 T--------------------------PPLLKAAQEGPIPLIPGV--------------STPSE--------LMLGMELG 128 (212)
T ss_pred C--------------------------HHHHHHHHHcCCCEeCCC--------------CCHHH--------HHHHHHCC
Confidence 1 248999999999872243 35532 44467789
Q ss_pred CCceEE
Q 004623 274 FHNFLF 279 (741)
Q Consensus 274 F~divi 279 (741)
++-+++
T Consensus 129 a~~vKl 134 (212)
T PRK05718 129 LRTFKF 134 (212)
T ss_pred CCEEEE
Confidence 988888
No 194
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=69.45 E-value=14 Score=43.46 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCC-CcEEEEeeeeecCCCCCCCCceeeecC-----CCceeEeeecce----------------eeeecCChhHHHHHHH
Q 004623 668 HLP-GVSIAIMGCIVNGPGEMADADFGYVGG-----APGKIDLYVGKT----------------VVKRGIAMEQATDALI 725 (741)
Q Consensus 668 hLk-gvkIAVMGCIVNGPGEmaDAD~GyvGg-----~pGki~LY~gke----------------~V~r~Ipeeeavd~Li 725 (741)
.|| -.||||-||--|-. ..---|+|++.. ..-..++|+|+- .+. -||.|++++-..
T Consensus 218 ~LPRKFKi~vsg~~~~~~-~~~~nDlgf~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ 295 (577)
T TIGR02042 218 YLPRKFKIAVTVPGDNSI-DLFTQDIGLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLG-YVPKEDIYYAVK 295 (577)
T ss_pred CCCCCceEEEEcCCCCcc-cceecceEEEEEEeCCCcEeeEEEEEecccCCCCCCccccchhccccC-cCCHHHHHHHHH
Confidence 477 68999999964443 333459999842 111478999863 233 288999888655
Q ss_pred HHHH---hccc
Q 004623 726 QLIK---DHGR 733 (741)
Q Consensus 726 ~lIk---~~g~ 733 (741)
..++ ++|.
T Consensus 296 av~~~~rd~G~ 306 (577)
T TIGR02042 296 AIVATQRDYGD 306 (577)
T ss_pred HHHHHHHHhCC
Confidence 5554 5554
No 195
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.27 E-value=53 Score=34.09 Aligned_cols=114 Identities=9% Similarity=0.026 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~ 194 (741)
.|.+..+..++.|.+.|...+=||..+..+.++++.++++.... -++-+=|=-=.+..-|..|+++=...=+-||--
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~-p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~-- 98 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDD-PEVLIGAGTVLDAVTARLAILAGAQFIVSPSFN-- 98 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCC-CCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCC--
Confidence 48899999999999999999999999999999999999862110 024444555677888888888744455678533
Q ss_pred hhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCC
Q 004623 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (741)
Q Consensus 195 ~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F 274 (741)
.+|++.|+++|+|.==|+ -||.. +.-+.+.|+
T Consensus 99 --------------------------~~v~~~~~~~~i~~iPG~--------------~T~~E--------~~~A~~~Ga 130 (213)
T PRK06552 99 --------------------------RETAKICNLYQIPYLPGC--------------MTVTE--------IVTALEAGS 130 (213)
T ss_pred --------------------------HHHHHHHHHcCCCEECCc--------------CCHHH--------HHHHHHcCC
Confidence 359999999999985444 24432 223345888
Q ss_pred CceEE
Q 004623 275 HNFLF 279 (741)
Q Consensus 275 ~divi 279 (741)
+-++|
T Consensus 131 d~vkl 135 (213)
T PRK06552 131 EIVKL 135 (213)
T ss_pred CEEEE
Confidence 88887
No 196
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=69.23 E-value=25 Score=32.93 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH----HHHHHHHHHHhhccCCcccceeeccCCCHHHHH
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR----EADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~----~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl 176 (741)
+.|+.+|-+.+.....+... .+.+.++|+|.|=+-..... ..+.+.+|++.+ -++|++..+|-+.....
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~---a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~ 129 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIA---AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAA 129 (200)
T ss_pred CCcEEEEEccCCchhhhhHH---HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccch
Confidence 46999999988765444322 46778899999977766632 556677777752 16899999986543332
Q ss_pred H-Hhhh-cCceeeCCCCCCch
Q 004623 177 R-VAEC-FDKIRVNPGNFADR 195 (741)
Q Consensus 177 ~-a~~~-vdkiRINPGNig~~ 195 (741)
. ..+. ++-|-+.+++.+..
T Consensus 130 ~~~~~~g~d~i~~~~~~~~~~ 150 (200)
T cd04722 130 AAAEEAGVDEVGLGNGGGGGG 150 (200)
T ss_pred hhHHHcCCCEEEEcCCcCCCC
Confidence 2 2344 89999999887653
No 197
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=68.62 E-value=94 Score=33.19 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeeccCCCHHH--
Q 004623 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSV-- 174 (741)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~l-- 174 (741)
||+.+-.+....+....|.+..++++.++.+.|-..+.+-+. ..++.+-+..|++. .| +++|..|.|-.+..
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~---~g-~~~l~vD~n~~~~~~~ 192 (316)
T cd03319 117 GGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA---AP-DARLRVDANQGWTPEE 192 (316)
T ss_pred CCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh---CC-CCeEEEeCCCCcCHHH
Confidence 554555555544344468899999999999999999998874 23556667777764 35 68999999866544
Q ss_pred HHHHhhhcCc
Q 004623 175 ALRVAECFDK 184 (741)
Q Consensus 175 Al~a~~~vdk 184 (741)
|++.++.++.
T Consensus 193 A~~~~~~l~~ 202 (316)
T cd03319 193 AVELLRELAE 202 (316)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 198
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=68.58 E-value=44 Score=36.79 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHH-HHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHh--hhcCceeeCCC
Q 004623 115 KDVAGTVEEVMRI-ADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVA--ECFDKIRVNPG 190 (741)
Q Consensus 115 ~Dv~atv~Qi~~L-~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~--~~vdkiRINPG 190 (741)
-|++.+++=+++| ++.+-+.+===+++ .+.+.+++++ +++|+.+|=.+ ...-....+ .++|-+.|.|.
T Consensus 145 ws~~~Ai~~~~~L~e~~~l~~iEqP~~~---~~~la~Lr~~-----~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~ 216 (327)
T PRK02901 145 WSVDEAVAAARALDADGPLEYVEQPCAT---VEELAELRRR-----VGVPIAADESIRRAEDPLRVARAGAADVAVLKVA 216 (327)
T ss_pred CCHHHHHHHHHHhhhccCceEEecCCCC---HHHHHHHHHh-----CCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcc
Confidence 3555555555555 44444444322333 4556666664 78999999543 233222333 35999999999
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
.+|+ +.++.+.|.++|+++=++
T Consensus 217 ~~GG-------------------------it~~lkiA~~~gi~v~v~ 238 (327)
T PRK02901 217 PLGG-------------------------VRAALDIAEQIGLPVVVS 238 (327)
T ss_pred hhCC-------------------------HHHHHHHHHHcCCcEEEe
Confidence 9998 344666789999888665
No 199
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=68.44 E-value=2.6 Score=34.69 Aligned_cols=13 Identities=62% Similarity=1.272 Sum_probs=11.4
Q ss_pred ceeecCCCCcccc
Q 004623 640 TEYVSCPSCGRTL 652 (741)
Q Consensus 640 te~ISCPsCGRTl 652 (741)
-+.+.||+|||.|
T Consensus 44 ~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 44 DEIVFCPNCGRIL 56 (56)
T ss_pred CCeEECcCCCccC
Confidence 5899999999964
No 200
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=68.38 E-value=12 Score=40.18 Aligned_cols=179 Identities=21% Similarity=0.407 Sum_probs=103.3
Q ss_pred eeEEEceeecCCCCceEE-EeccCCCCCCHH-HHHHHHHHH-HHcCCCEEEEec--------------CCH-HHHHHHHH
Q 004623 89 RTVMVGNVAIGSEHPIRV-QTMTTNDTKDVA-GTVEEVMRI-ADQGADLVRITV--------------QGK-READACFE 150 (741)
Q Consensus 89 r~V~VG~V~IGG~~PI~V-QSMt~t~T~Dv~-atv~Qi~~L-~~aGceiVRvav--------------p~~-~~A~al~~ 150 (741)
+.|++|++.+|.+.|.++ --|+--..+|.. .+..+++++ ...|-++|==+. |+. +.-+.|.+
T Consensus 3 ~~vk~g~i~~~n~~~~~LiaGpcviEs~d~a~~~a~~lk~~t~~lgi~~vfKsSfDKANRsSi~s~RGpGLeeglki~~~ 82 (279)
T COG2877 3 KVVKVGDIVIGNDLPFVLIAGPCVIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRSSIHSYRGPGLEEGLKILQE 82 (279)
T ss_pred ceEEeCCEEecCCCceEEEeccceeccHHHHHHHHHHHHHHHhccCCceEEecccccccccccccccCCCHHHHHHHHHH
Confidence 579999999999887653 444444444432 222333333 367888874443 333 45678999
Q ss_pred HHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhc
Q 004623 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (741)
Q Consensus 151 I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~ 230 (741)
||++ +.+|++.|+|-.+... .+++.+|=|-|- -=+ - +=+.++.+|-+-
T Consensus 83 vK~e-----fgv~ilTDVHe~~q~~-~vA~VvDilQiP-AFL-c------------------------RQTDLl~A~AkT 130 (279)
T COG2877 83 VKEE-----FGVPILTDVHEPSQAQ-PVAEVVDVLQIP-AFL-C------------------------RQTDLLVAAAKT 130 (279)
T ss_pred HHHH-----cCCceeeccCChhhcc-hHHhhhhhhcch-HHH-h------------------------hhHHHHHHHHHh
Confidence 9997 9999999999876544 666777777663 111 1 125577777788
Q ss_pred CCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHH----HHHHHHH---CCCCceEEEEecCChhHHHHHHHHHHHHhhcC
Q 004623 231 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE----FARICRK---LDFHNFLFSMKASNPVVMVQAYRLLVAEMYVH 303 (741)
Q Consensus 231 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle----~~~i~e~---~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~ 303 (741)
|.+|-| --|-. |+=+ .-+..|+.+++ .+=+||+ .||+|+|+-|.+- .+| . +
T Consensus 131 g~~vNi--KKgQF----LaPw--dMknvv~K~~~~gn~~v~lcERG~sFGYnnLV~DMrsl--~iM-------~-~---- 188 (279)
T COG2877 131 GAVVNV--KKGQF----LAPW--DMKNIVEKFLETGNNKVILCERGASFGYNNLVVDMRSL--PIM-------K-E---- 188 (279)
T ss_pred CCeEee--ccccc----cChh--HhhhHHHHHHhcCCCcEEEEeccCccCcchhHHHhhhh--HHH-------H-H----
Confidence 888754 22321 1111 00122333332 2334443 6777777665442 222 1 1
Q ss_pred CCCccccccccccCCCCCC
Q 004623 304 GWDYPLHLGVTEAGEGEDG 322 (741)
Q Consensus 304 g~dyPLHLGVTEAG~~~~G 322 (741)
+.+|.-.-+|-+=-...|
T Consensus 189 -~~~PViFDaTHSvQ~pgg 206 (279)
T COG2877 189 -FGAPVIFDATHSVQQPGG 206 (279)
T ss_pred -cCCCeEEecccceeCCCC
Confidence 458888888776544444
No 201
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=68.18 E-value=1.4e+02 Score=30.11 Aligned_cols=127 Identities=16% Similarity=0.127 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHhhccCCcccceeeccCCC-----HHHH-HHHhhh-cC
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNYNIPLVADIHFA-----PSVA-LRVAEC-FD 183 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~--~A~al~~I~~~L~~~~~~iPLVADIHF~-----~~lA-l~a~~~-vd 183 (741)
|..|.+..++=+.++.+.- ++|-+-.|=.. -.+-++.|++ . .++++|+|+. +... ..+++. +|
T Consensus 11 D~~~~~~~~~~~~~~~~~~-~~vk~g~~l~~~~G~~~v~~ir~----~---~~i~~D~k~~di~~~~~~~~~~~~~~gad 82 (215)
T PRK13813 11 DVTDRERALKIAEELDDYV-DAIKVGWPLVLASGLGIIEELKR----Y---APVIADLKVADIPNTNRLICEAVFEAGAW 82 (215)
T ss_pred CCCCHHHHHHHHHhccccC-CEEEEcHHHHHhhCHHHHHHHHh----c---CCEEEEeeccccHHHHHHHHHHHHhCCCC
Confidence 6667766655555444332 34555433222 1233444544 2 2788899985 2322 345555 77
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 184 kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAl 263 (741)
-|=+.+- .|. . .+.++++.|+++|++.=+-+|..+. .-++.| .+-.-
T Consensus 83 ~vtvh~e-~g~-~----------------------~l~~~i~~~~~~g~~~~v~~~~~~~--~~~~~~-------~~~~~ 129 (215)
T PRK13813 83 GIIVHGF-TGR-D----------------------SLKAVVEAAAESGGKVFVVVEMSHP--GALEFI-------QPHAD 129 (215)
T ss_pred EEEEcCc-CCH-H----------------------HHHHHHHHHHhcCCeEEEEEeCCCC--CCCCCH-------HHHHH
Confidence 7777664 322 1 3677999999999866444454321 111111 13344
Q ss_pred HHHHHHHHCCCCceEEE
Q 004623 264 EFARICRKLDFHNFLFS 280 (741)
Q Consensus 264 e~~~i~e~~~F~diviS 280 (741)
..++++.+.||.-.+++
T Consensus 130 ~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 130 KLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHHHHHhCCCeEEEC
Confidence 55778999999877654
No 202
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.10 E-value=9.5 Score=44.25 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCEEEEec-------------CCHHHHHHHHHHHHh----hccCCcccceeec--cCCCHHHHHHHh
Q 004623 119 GTVEEVMRIADQGADLVRITV-------------QGKREADACFEIKNS----LVQKNYNIPLVAD--IHFAPSVALRVA 179 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvav-------------p~~~~A~al~~I~~~----L~~~~~~iPLVAD--IHF~~~lAl~a~ 179 (741)
.|.++.+.|.+||||.|+|.. -..-...++.++.+. +++.|..+|+||| |++...++.+-+
T Consensus 293 ~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla 372 (502)
T PRK07107 293 VDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA 372 (502)
T ss_pred cCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH
Confidence 367788999999999997721 112345566666654 3345767999999 777777764322
Q ss_pred hhcCceee
Q 004623 180 ECFDKIRV 187 (741)
Q Consensus 180 ~~vdkiRI 187 (741)
-..|.|=|
T Consensus 373 ~GA~~vm~ 380 (502)
T PRK07107 373 MGADFIML 380 (502)
T ss_pred cCCCeeee
Confidence 22555543
No 203
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=68.06 E-value=85 Score=32.94 Aligned_cols=114 Identities=21% Similarity=0.299 Sum_probs=67.7
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHH-
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVALRV- 178 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a- 178 (741)
+-|+-|-=|.+. .+ ..|..++++||++|=+-+-.. .-.+.|..||+. |+..=| =+||.--++.
T Consensus 62 ~~~~dvHLMv~~----P~---~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~----g~k~Gl----alnP~T~~~~i 126 (223)
T PRK08745 62 TAPIDVHLMVEP----VD---RIVPDFADAGATTISFHPEASRHVHRTIQLIKSH----GCQAGL----VLNPATPVDIL 126 (223)
T ss_pred CCCEEEEeccCC----HH---HHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHC----CCceeE----EeCCCCCHHHH
Confidence 356777777753 33 356788899999987766532 234566666664 654322 2444333333
Q ss_pred ---hhhcCcee---eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHH
Q 004623 179 ---AECFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (741)
Q Consensus 179 ---~~~vdkiR---INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 246 (741)
++.+|.|= +|||--|- +|... .-+|++++-+..++++..++|.| -|.++.+
T Consensus 127 ~~~l~~vD~VlvMtV~PGf~GQ---~fi~~-------------~l~KI~~l~~~~~~~~~~~~IeV-DGGI~~e 183 (223)
T PRK08745 127 DWVLPELDLVLVMSVNPGFGGQ---AFIPS-------------ALDKLRAIRKKIDALGKPIRLEI-DGGVKAD 183 (223)
T ss_pred HHHHhhcCEEEEEEECCCCCCc---cccHH-------------HHHHHHHHHHHHHhcCCCeeEEE-ECCCCHH
Confidence 33456554 79987764 24322 13344456666667888899999 5556554
No 204
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.06 E-value=29 Score=40.45 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCcee--eCCC
Q 004623 119 GTVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNPG 190 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp~~---~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR--INPG 190 (741)
.+.+.+.+|.++|+|+|=|.+..- ...+.+++|++.. +-+++|+|=-=-.+.-|..++++ +|.|+ |-||
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~---~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~G 316 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKY---GDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGG 316 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhC---CCCceEEeccccCHHHHHHHHHcCCCEEEECCCCC
Confidence 367889999999999998863322 2367788888752 12378888666678888889987 88887 4677
No 205
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=67.69 E-value=43 Score=36.15 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=44.3
Q ss_pred cccceeeccCCC-HHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 160 YNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 160 ~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
+++|+.+|=.+. +.-+..+++ ++|-|.|-|...|.-. .+.++++.|..+|+++=+
T Consensus 205 ~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~----------------------~~~~i~~~a~~~gi~~~~ 262 (307)
T TIGR01927 205 TGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPA----------------------KLRDLAQKAHRLGLQAVF 262 (307)
T ss_pred CCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHH----------------------HHHHHHHHHHHcCCCEEE
Confidence 689999997643 444445554 3888999999999844 468899999999999988
Q ss_pred ee
Q 004623 237 GT 238 (741)
Q Consensus 237 Gv 238 (741)
|-
T Consensus 263 ~~ 264 (307)
T TIGR01927 263 SS 264 (307)
T ss_pred EC
Confidence 84
No 206
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=67.51 E-value=1.8e+02 Score=31.08 Aligned_cols=143 Identities=14% Similarity=0.171 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC----------CHHHHHHHHHHHHhhccCCcccceee----c--cCC-----C--H
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQ----------GKREADACFEIKNSLVQKNYNIPLVA----D--IHF-----A--P 172 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp----------~~~~A~al~~I~~~L~~~~~~iPLVA----D--IHF-----~--~ 172 (741)
..+..++-...|.++|.+.+=+..| +..+.+.++.|++.. -+.+|.+ + +.| + .
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~----~~~~l~~~~r~~~~~~~~~~p~~~~~ 94 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAM----PNTPLQMLLRGQNLVGYRHYPDDVVE 94 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhC----CCCceehhcccccccCccCCCcHHHH
Confidence 4466677788999999999999886 566778888888752 2344442 1 111 1 1
Q ss_pred HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeecc-CCCcHHHHhh
Q 004623 173 SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH-GSLSDRIMSY 250 (741)
Q Consensus 173 ~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~-GSL~~~il~~ 250 (741)
..-..++++ ++-||| +-. ... -+++.+.++.||++|.-++..+.. .+ .+
T Consensus 95 ~di~~~~~~g~~~iri----~~~-~~~------------------~~~~~~~i~~ak~~G~~v~~~i~~~~~------~~ 145 (275)
T cd07937 95 LFVEKAAKNGIDIFRI----FDA-LND------------------VRNLEVAIKAVKKAGKHVEGAICYTGS------PV 145 (275)
T ss_pred HHHHHHHHcCCCEEEE----eec-CCh------------------HHHHHHHHHHHHHCCCeEEEEEEecCC------CC
Confidence 111144555 788887 111 000 125777999999999988876642 11 11
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 251 yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
.+++-+ .+.++.+.+.|.+. |+++-| .|..+.+-++.+.++
T Consensus 146 --~~~~~~----~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 146 --HTLEYY----VKLAKELEDMGADS--ICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred --CCHHHH----HHHHHHHHHcCCCE--EEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 133333 34556677788775 466655 344444444444444
No 207
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.20 E-value=38 Score=37.01 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=57.3
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec--CC-HHHHHHHHHHHHhhccCCcccceeeccCCCHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV--QG-KREADACFEIKNSLVQKNYNIPLVADIHFAPSV 174 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav--p~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~l 174 (741)
+||.. =.|....+....+.+..++|+.++.+.|..-+.+-+ ++ .++.+.+..|++. -|-++.|..|-|-.+..
T Consensus 124 lGg~~-~~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~---~g~~~~l~vDaN~~~~~ 199 (355)
T cd03321 124 LGGNP-RPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA---VGDGVGLMVDYNQSLTV 199 (355)
T ss_pred hCCCC-CCeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh---hCCCCEEEEeCCCCcCH
Confidence 46642 245555444455678899999999999999988877 34 3577888888885 34568999999866544
Q ss_pred --HHHHhhhcCc
Q 004623 175 --ALRVAECFDK 184 (741)
Q Consensus 175 --Al~a~~~vdk 184 (741)
|+..++.+++
T Consensus 200 ~~A~~~~~~l~~ 211 (355)
T cd03321 200 PEAIERGQALDQ 211 (355)
T ss_pred HHHHHHHHHHHc
Confidence 4444444544
No 208
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=66.63 E-value=9.5 Score=39.52 Aligned_cols=67 Identities=25% Similarity=0.414 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeC
Q 004623 119 GTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVN 188 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp~~-----~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRIN 188 (741)
+|+++.+..+++|+|+|=-|.-+- .+--.+.-|++ |.+. ++|+||.-|++ |..|.+|++. ++.|=+.
T Consensus 100 st~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~-l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 100 STLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRE-LVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHH-HHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred CCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHH-HHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 578888889999999998873211 13344444443 4443 79999999997 8999999997 8877653
No 209
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=66.63 E-value=28 Score=38.23 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCCEEEEe------------------------cCCHHH-------------HHHHHHHHHhhccCCcc
Q 004623 119 GTVEEVMRIADQGADLVRIT------------------------VQGKRE-------------ADACFEIKNSLVQKNYN 161 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRva------------------------vp~~~~-------------A~al~~I~~~L~~~~~~ 161 (741)
+|+.+-++-.++|+++||-| ..+..+ -+-|+++++. .+
T Consensus 129 ~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~-----~~ 203 (293)
T PRK04180 129 RNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL-----GR 203 (293)
T ss_pred CCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh-----CC
Confidence 35677777888999999999 332211 2345555553 56
Q ss_pred ccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 162 IPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 162 iPLV--ADIHF-~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
+|+| |--+. +|.-|-.+++. ++.|=+.-+=+...+ ....-.+|.+.+.+-.+ -..+.+..+..|-+| .|
T Consensus 204 iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d-----P~~~akafv~ai~~~~~-~~~~~~~s~~~~~~m-~g 276 (293)
T PRK04180 204 LPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD-----PEKRARAIVEATTHYDD-PEVLAEVSKGLGEAM-VG 276 (293)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC-----HHHHHHHHHHHHHHcCC-HHHHHHHHccccccc-CC
Confidence 9998 77777 78777788887 888876555442211 00112334454544444 566888888999888 48
Q ss_pred eccCCCcH
Q 004623 238 TNHGSLSD 245 (741)
Q Consensus 238 vN~GSL~~ 245 (741)
.|-.+|++
T Consensus 277 ~~~~~~~~ 284 (293)
T PRK04180 277 IDIDELPP 284 (293)
T ss_pred CccccCCH
Confidence 88888854
No 210
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=66.47 E-value=68 Score=34.38 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCEEEEecCC---H-HHHHHHHHHHHhhccCCcccceeeccCCCHHH---------HHHHhhh-cCceeeC
Q 004623 123 EVMRIADQGADLVRITVQG---K-READACFEIKNSLVQKNYNIPLVADIHFAPSV---------ALRVAEC-FDKIRVN 188 (741)
Q Consensus 123 Qi~~L~~aGceiVRvavp~---~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~l---------Al~a~~~-vdkiRIN 188 (741)
.....+..|.|+|-|-..+ . +..+.+..+.+.++...-+.-+||..-.|+.. --.++++ ++.+=|-
T Consensus 72 aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlD 151 (235)
T PF04476_consen 72 AALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLD 151 (235)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEe
Confidence 3566778899999999753 2 44466677766666555556678766666532 2234454 7766665
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHh
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS 249 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~ 249 (741)
-..= ++..-|+... .+.+.++|+.|+++|.-. |. +|||...-+.
T Consensus 152 Ta~K-dg~~L~d~~~-------------~~~L~~Fv~~ar~~gL~~--aL-AGSL~~~di~ 195 (235)
T PF04476_consen 152 TADK-DGGSLFDHLS-------------EEELAEFVAQARAHGLMC--AL-AGSLRFEDIP 195 (235)
T ss_pred cccC-CCCchhhcCC-------------HHHHHHHHHHHHHccchh--hc-cccCChhHHH
Confidence 4432 2233355443 446888999999999877 66 9999765443
No 211
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.46 E-value=55 Score=36.76 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=82.7
Q ss_pred cCCCCceEEEeccCCC---CC--CHHHHHHHHHHHHHcCCC-EEEEecCCH-----HHHHHHHHHHHhhccCCcccceee
Q 004623 98 IGSEHPIRVQTMTTND---TK--DVAGTVEEVMRIADQGAD-LVRITVQGK-----READACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~---T~--Dv~atv~Qi~~L~~aGce-iVRvavp~~-----~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
+|.+..+.|=- |.- -- |.+.+++-+++|++.+-+ +.-+-=|=. ..-+.+.+++++++++++.+|+++
T Consensus 189 ~G~~~~l~vDa--N~~w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~ 266 (369)
T cd03314 189 PGYHPILHIDV--YGTIGQAFDPDPDRAADYLATLEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVA 266 (369)
T ss_pred cCCCCEEEEEc--CCccccccCCCHHHHHHHHHHHHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEe
Confidence 56777777654 321 12 667788888888876322 344443322 346788888887777788999999
Q ss_pred ccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 167 DIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 167 DIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
|=+. +..-+..+++ ++|-+.+.+...|.-. ...++.+.|..+|+++=+|-
T Consensus 267 dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt----------------------~a~kia~lA~a~Gi~~~~h~ 319 (369)
T cd03314 267 DEWCNTLEDIRDFADAGAAHMVQIKTPDLGGID----------------------NTIDAVLYCKEHGVGAYLGG 319 (369)
T ss_pred cCCcCCHHHHHHHHHhCCCCEEEecchhcCCHH----------------------HHHHHHHHHHHcCCcEEEeC
Confidence 9774 4555555555 4999999999999844 36789999999999997774
No 212
>PRK05826 pyruvate kinase; Provisional
Probab=66.31 E-value=30 Score=40.08 Aligned_cols=153 Identities=15% Similarity=0.190 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCc-ccceeeccCCCHHHHHHHhh----hcCceeeCCCC
Q 004623 118 AGTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAE----CFDKIRVNPGN 191 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRva-vp~~~~A~al~~I~~~L~~~~~-~iPLVADIHF~~~lAl~a~~----~vdkiRINPGN 191 (741)
+.-...|++..+.|++.|=+. |.+.++++.+. +-|.+.+. ++.++|=|-= +-|++.++ .+|.|=|-||.
T Consensus 173 e~D~~~i~~ald~g~d~I~~sfV~saedv~~l~---~~l~~~~~~~~~iiakIEt--~eav~nldeI~~~~DgImIgrgD 247 (465)
T PRK05826 173 EKDKADIKFAAEQGVDYIAVSFVRSAEDVEEAR---RLLREAGCPHAKIIAKIER--AEAVDNIDEIIEASDGIMVARGD 247 (465)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHH---HHHHHcCCcCceEEEEEcC--HHHHHhHHHHHHHcCEEEECcch
Confidence 555666778889999998665 56666666554 55555666 7899998843 44665544 28999999999
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCc--hHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSP--RGMVESAFEFAR 267 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~--~amVeSAle~~~ 267 (741)
+|-.- . .+++.+..+.++++|+++|+|+=+-+ .+|+..- +.| ..+ --+-
T Consensus 248 Lg~el--------g-------~~~v~~~qk~Ii~~c~~~gKpvi~AT-------qmLeSM~~~p~PTRAEv-----sDVa 300 (465)
T PRK05826 248 LGVEI--------P-------DEEVPGLQKKIIRKAREAGKPVITAT-------QMLESMIENPRPTRAEV-----SDVA 300 (465)
T ss_pred hhhhc--------C-------cHhHHHHHHHHHHHHHHcCCCEEEEC-------HHHHHHhhCCCCchhhh-----hhHH
Confidence 97622 1 34555566789999999999983333 2344332 122 111 1122
Q ss_pred HHHHCCCCceEEE---EecCChhHHHHHHHHHHHHhhc
Q 004623 268 ICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYV 302 (741)
Q Consensus 268 i~e~~~F~diviS---~KaSnv~~~i~Ayrlla~~m~~ 302 (741)
-+--.|.+-+.+| .+-..|...|+.-+.++++.++
T Consensus 301 nav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~ 338 (465)
T PRK05826 301 NAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEK 338 (465)
T ss_pred HHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHh
Confidence 2233588999998 4556788889999999988664
No 213
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=66.16 E-value=79 Score=35.96 Aligned_cols=136 Identities=12% Similarity=0.192 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEe----cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeC
Q 004623 116 DVAGTVEEVMRIADQ---GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (741)
Q Consensus 116 Dv~atv~Qi~~L~~a---GceiVRva----vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRIN 188 (741)
-+++-+++|...++. +..+-.|. +|+.-..+.+.+|.+.|++. .|+..|. +. .+..|
T Consensus 83 y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~---~~~~~~~-----------e~--tie~~ 146 (453)
T PRK13347 83 YVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDA---FDFAPEA-----------EI--AVEID 146 (453)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHh---CCCCCCc-----------eE--EEEec
Confidence 467888888876654 24555565 45543444555555544331 2221111 11 25689
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCC-CchHHHHHHHHHHH
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 267 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~ 267 (741)
|+.+- .+.++..++.|+- ||-+.-=|+++++++..+. .. .+.+++-++
T Consensus 147 p~~lt---------------------------~e~l~~L~~~G~~-rvsiGvQS~~~~vl~~l~R~~~---~~~~~~ai~ 195 (453)
T PRK13347 147 PRTVT---------------------------AEMLQALAALGFN-RASFGVQDFDPQVQKAINRIQP---EEMVARAVE 195 (453)
T ss_pred cccCC---------------------------HHHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCCCC---HHHHHHHHH
Confidence 99982 2367888888864 7777778899999999873 23 344556677
Q ss_pred HHHHCCCCceEE----EEecCChhHHHHHHHHHHH
Q 004623 268 ICRKLDFHNFLF----SMKASNPVVMVQAYRLLVA 298 (741)
Q Consensus 268 i~e~~~F~divi----S~KaSnv~~~i~Ayrlla~ 298 (741)
.+++.||.+|.+ -+---+...+.+..+.+.+
T Consensus 196 ~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 230 (453)
T PRK13347 196 LLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA 230 (453)
T ss_pred HHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh
Confidence 888899975444 4445555555555444443
No 214
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=66.01 E-value=40 Score=36.73 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhh--hcCceeeCCCC
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGN 191 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGN 191 (741)
+.+.+++-.++|++.|- .-+-=|= .++.+.+.+++++ +++|+.+|=++. ..-....++ ++|-+.+.|..
T Consensus 200 ~~~~A~~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~~-----~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~ 272 (365)
T cd03318 200 DESTAIRALPRLEAAGV--ELIEQPVPRENLDGLARLRSR-----NRVPIMADESVSGPADAFELARRGAADVFSLKIAK 272 (365)
T ss_pred CHHHHHHHHHHHHhcCc--ceeeCCCCcccHHHHHHHHhh-----cCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecc
Confidence 34444444455555442 2233221 1234555566664 889999997754 444445444 39999999999
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
.|.-. .+.+++..|+++|+++=+|
T Consensus 273 ~GGit----------------------~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 273 SGGLR----------------------RAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred cCCHH----------------------HHHHHHHHHHHcCCceeec
Confidence 98844 4688999999999987555
No 215
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=65.98 E-value=1.1e+02 Score=33.46 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHhhccCC--cccce-eeccCCCHHHHHHHh-hh-cCce
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQKN--YNIPL-VADIHFAPSVALRVA-EC-FDKI 185 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~-----~~A~al~~I~~~L~~~~--~~iPL-VADIHF~~~lAl~a~-~~-vdki 185 (741)
|.+.-+++++++++.|+.-|=+|..+. ..+..+.++.+.|++.. +.|-+ +.|..-+.. ++..+ ++ ++-+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e-~l~~l~~aG~dv~ 170 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIA-ALDILLDAPPDVY 170 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHH-HHHHHHHcCchhh
Confidence 678889999999999999888885432 12444555555555432 22322 223322333 22222 22 3322
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhc--CCeEEEeeccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 186 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~--g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAl 263 (741)
+.|+-....-|.. +-.. .=.++..++++.+|+. |+++.-|+=-| +|.|.+.++
T Consensus 171 ---~hnlEt~~~l~~~-vrr~--------~t~e~~Le~l~~ak~~~pgi~~~TgiIVG---------lGETeee~~---- 225 (302)
T TIGR00510 171 ---NHNLETVERLTPF-VRPG--------ATYRWSLKLLERAKEYLPNLPTKSGIMVG---------LGETNEEIK---- 225 (302)
T ss_pred ---cccccchHHHHHH-hCCC--------CCHHHHHHHHHHHHHhCCCCeecceEEEE---------CCCCHHHHH----
Confidence 2233111111100 0000 1123456688888887 67776665333 466765444
Q ss_pred HHHHHHHHCCCCceEEE-----------EecCChhHHHHHHHHHHHH
Q 004623 264 EFARICRKLDFHNFLFS-----------MKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 264 e~~~i~e~~~F~diviS-----------~KaSnv~~~i~Ayrlla~~ 299 (741)
+.++.++++||+.+.|. |+.--.+..-+.|+.+|..
T Consensus 226 etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~ 272 (302)
T TIGR00510 226 QTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALE 272 (302)
T ss_pred HHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 56778889999988875 4445556677778877766
No 216
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=65.93 E-value=77 Score=32.01 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCCEEEEec------CCHHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCC
Q 004623 119 GTVEEVMRIADQGADLVRITV------QGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPG 190 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvav------p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPG 190 (741)
..++-.+.+.+.|++.+=|.- ........+++|++. +++|+.++-... +.-|.++++. +|+|=|+=.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-----VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-----cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 344455567778998887761 222345567777775 689999987654 5666677776 898866555
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHH
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e 270 (741)
.+.+.+ .++++++.+.+..+.+-|.+..|.+-. .|.. +..-.+..+.++.++
T Consensus 105 ~l~dp~----------------------~~~~i~~~~g~~~i~~sid~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 156 (234)
T cd04732 105 AVKNPE----------------------LVKELLKEYGGERIVVGLDAKDGKVAT-----KGWL-ETSEVSLEELAKRFE 156 (234)
T ss_pred HHhChH----------------------HHHHHHHHcCCceEEEEEEeeCCEEEE-----CCCe-eecCCCHHHHHHHHH
Confidence 553321 233333332222233333443443211 1100 011225567889999
Q ss_pred HCCCCceEEE-EecCC--hhHHHHHHHHHHHHhhcCCCCccc
Q 004623 271 KLDFHNFLFS-MKASN--PVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 271 ~~~F~diviS-~KaSn--v~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
+.|++-|.+. +-... ...-.+.++.+.+. ++.|+
T Consensus 157 ~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----~~ipv 193 (234)
T cd04732 157 ELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----TGIPV 193 (234)
T ss_pred HcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----cCCCE
Confidence 9999988775 31110 11124556666666 56674
No 217
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=65.81 E-value=81 Score=35.32 Aligned_cols=111 Identities=22% Similarity=0.200 Sum_probs=63.2
Q ss_pred HHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCC------
Q 004623 122 EEVMRIADQ---GADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF------ 192 (741)
Q Consensus 122 ~Qi~~L~~a---GceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNi------ 192 (741)
+++....++ |..+ ++++-+.++.+.|.++.+.+ +.+..+ .|||||+.-
T Consensus 99 ~~l~~a~~~~~~g~~v-~i~vDs~~EL~~l~~~a~~~---~~~~~v-------------------~lRinp~~~~~~~~~ 155 (409)
T cd06830 99 EYIELALLARKLGHNV-IIVIEKLSELDLILELAKKL---GVKPLL-------------------GVRIKLASKGSGKWQ 155 (409)
T ss_pred HHHHHHHhcCcCCceE-EEEECCHHHHHHHHHHHHHc---CCCceE-------------------EEEEccCCCCCccee
Confidence 345444443 6666 88899998888888887642 111111 279999842
Q ss_pred --CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE-e--eccCCCcHHHHhhcCCCchHHHHHHHHHHH
Q 004623 193 --ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI-G--TNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (741)
Q Consensus 193 --g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI-G--vN~GSL~~~il~~yg~t~~amVeSAle~~~ 267 (741)
+....+|-... +.+.++++.+++.+..+|+ | ...||=-.+. +.| ...++.+++.++
T Consensus 156 ~~~~~~sKFGi~~--------------~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~-~~~----~~~~~~~~~~~~ 216 (409)
T cd06830 156 ESGGDRSKFGLTA--------------SEILEVVEKLKEAGMLDRLKLLHFHIGSQITDI-RRI----KSALREAARIYA 216 (409)
T ss_pred ccCCCCCCCCCCH--------------HHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCH-HHH----HHHHHHHHHHHH
Confidence 23233344321 2367788899998754553 4 4445542221 111 355666677777
Q ss_pred HHHHCCC
Q 004623 268 ICRKLDF 274 (741)
Q Consensus 268 i~e~~~F 274 (741)
.+++.|+
T Consensus 217 ~~~~~g~ 223 (409)
T cd06830 217 ELRKLGA 223 (409)
T ss_pred HHHHhCC
Confidence 6766664
No 218
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.70 E-value=67 Score=33.83 Aligned_cols=117 Identities=15% Similarity=0.098 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig 193 (741)
..|.+.+++.++.|.+.|...+=||..+..+.++++.+++...++.-++-+=|=-=.+..-|..|+++=.+.=+-|| +
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~-~- 100 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL-F- 100 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC-C-
Confidence 45889999999999999999999999999999999999865433322344445555678888888887455667885 3
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCC
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~ 273 (741)
+ .+|++.|+++|+|.==|+ -||. .+..+.++|
T Consensus 101 ~--------------------------~~v~~~~~~~~i~~iPG~--------------~Tps--------Ei~~A~~~G 132 (222)
T PRK07114 101 N--------------------------PDIAKVCNRRKVPYSPGC--------------GSLS--------EIGYAEELG 132 (222)
T ss_pred C--------------------------HHHHHHHHHcCCCEeCCC--------------CCHH--------HHHHHHHCC
Confidence 1 359999999999985554 2553 334456789
Q ss_pred CCceEEE
Q 004623 274 FHNFLFS 280 (741)
Q Consensus 274 F~diviS 280 (741)
++-++|=
T Consensus 133 a~~vKlF 139 (222)
T PRK07114 133 CEIVKLF 139 (222)
T ss_pred CCEEEEC
Confidence 9887774
No 219
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=65.68 E-value=23 Score=37.39 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=69.7
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHh
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~ 179 (741)
+-|+-|-=|.+. --+.|..++++||++|=+-+-. ..-.+.|..||+ .|. |+-|=+=+||.--++.+
T Consensus 68 ~~~~DvHLMv~~-------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~----~g~--~~kaGlalnP~Tp~~~i 134 (228)
T PRK08091 68 HCFKDVHLMVRD-------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAK----QKT--TVLIGLCLCPETPISLL 134 (228)
T ss_pred CCCEEEEeccCC-------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHH----CCC--CceEEEEECCCCCHHHH
Confidence 357788888763 3457788999999988776552 223456666666 353 33444445554333333
Q ss_pred ----hhcCcee---eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHH
Q 004623 180 ----ECFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (741)
Q Consensus 180 ----~~vdkiR---INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 246 (741)
+.+|.|= +|||-=|- +|... -++| ++++-+.-+++|.-+.|.|. |++..+
T Consensus 135 ~~~l~~vD~VLiMtV~PGfgGQ---~f~~~---------~l~K----I~~lr~~~~~~~~~~~IeVD-GGI~~~ 191 (228)
T PRK08091 135 EPYLDQIDLIQILTLDPRTGTK---APSDL---------ILDR----VIQVENRLGNRRVEKLISID-GSMTLE 191 (228)
T ss_pred HHHHhhcCEEEEEEECCCCCCc---cccHH---------HHHH----HHHHHHHHHhcCCCceEEEE-CCCCHH
Confidence 3466554 79986653 24322 2344 44455666678888899994 445443
No 220
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=65.42 E-value=28 Score=37.27 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHcCCC-EEEEecCC-----HHHHHHHHHHHHhhccCCcccceeeccCCCHH---HHHHHhhhcCcee
Q 004623 116 DVAGTVEEVMRIADQGAD-LVRITVQG-----KREADACFEIKNSLVQKNYNIPLVADIHFAPS---VALRVAECFDKIR 186 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGce-iVRvavp~-----~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~---lAl~a~~~vdkiR 186 (741)
|.++..+=+.+|+++-+- =+||--|= .+.-+++++|++.|.++|+++.||||=+-|-- .+...++++|=|-
T Consensus 87 d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQ 166 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAPFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQ 166 (248)
T ss_dssp -HHHHHHHHHHHHHHHTTS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEE
Confidence 889999999999876544 37887652 35678999999999999999999999888732 2334556789999
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 187 INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
|-.=.+|+-. +..+-|..||++|+--=.|
T Consensus 167 IKtPDLGgi~----------------------ntieAvlyCk~~gvgaY~G 195 (248)
T PF07476_consen 167 IKTPDLGGIN----------------------NTIEAVLYCKEHGVGAYLG 195 (248)
T ss_dssp E-GGGGSSTH----------------------HHHHHHHHHHHTT-EEEE-
T ss_pred ecCCCccchh----------------------hHHHHHHHHHhcCCceeec
Confidence 9888887743 2455688999999754333
No 221
>PTZ00300 pyruvate kinase; Provisional
Probab=65.30 E-value=36 Score=39.33 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHh----hhcCceeeCCCCCC
Q 004623 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA----ECFDKIRVNPGNFA 193 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~----~~vdkiRINPGNig 193 (741)
+...+.|....+.|+|.| ++|-.+.|+-+.++++.+.+.|.++++||=|-= .-|++.+ +.+|.|=|-||.+|
T Consensus 147 ekD~~dI~~ald~gvd~I--~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt--~eav~nldeI~~~~DgImVaRGDLg 222 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMI--FASFIRSAEQVGEVRKALGAKGGDIMIICKIEN--HQGVQNIDSIIEESDGIMVARGDLG 222 (454)
T ss_pred hhhHHHHHHHHHCCCCEE--EECCCCCHHHHHHHHHHHHhcCCCceEEEEECC--HHHHHhHHHHHHhCCEEEEecchhh
Confidence 344556777889999995 556666666666666666666778999998753 4444433 35999999999998
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC----CCchHHHHHHHHHHHHH
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG----DSPRGMVESAFEFARIC 269 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg----~t~~amVeSAle~~~i~ 269 (741)
-.- .++++...-+.++++|+++|+|+=+.++ +|+..- +|-..+. -+--+
T Consensus 223 vei---------------~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ-------mLeSM~~~p~PTRAEvs-----DVanA 275 (454)
T PTZ00300 223 VEI---------------PAEKVVVAQKILISKCNVAGKPVICATQ-------MLESMTYNPRPTRAEVS-----DVANA 275 (454)
T ss_pred hhc---------------ChHHHHHHHHHHHHHHHHcCCCEEEECc-------hHHHHhhCCCCCchhHH-----HHHHH
Confidence 622 1445555667899999999999977763 333322 2211110 11112
Q ss_pred HHCCCCceEEE---EecCChhHHHHHHHHHHHHhhc
Q 004623 270 RKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYV 302 (741)
Q Consensus 270 e~~~F~diviS---~KaSnv~~~i~Ayrlla~~m~~ 302 (741)
---|.+-+-+| .+-..|..+|+.-+.++.+.++
T Consensus 276 v~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~ 311 (454)
T PTZ00300 276 VFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQS 311 (454)
T ss_pred HHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHh
Confidence 22588888887 4556788888888888887654
No 222
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=65.29 E-value=1.7e+02 Score=31.40 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=97.0
Q ss_pred HHHHHcCCCEEEEe---------cCC------HHHHHHHHHHHHhhccCCcccc-eeeccCCC-HH--------HHHHHh
Q 004623 125 MRIADQGADLVRIT---------VQG------KREADACFEIKNSLVQKNYNIP-LVADIHFA-PS--------VALRVA 179 (741)
Q Consensus 125 ~~L~~aGceiVRva---------vp~------~~~A~al~~I~~~L~~~~~~iP-LVADIHF~-~~--------lAl~a~ 179 (741)
+-++++|+|++=+. .|| .+-....+.|.+ +.+.| +|||+-|. |. -|.+.+
T Consensus 26 ~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r-----~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 26 KLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRR-----GAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh-----cCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 44678899999432 111 123344455555 68899 99999876 32 244455
Q ss_pred h-h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE--EeeccCCCcHHHHhhc---C
Q 004623 180 E-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR--IGTNHGSLSDRIMSYY---G 252 (741)
Q Consensus 180 ~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR--IGvN~GSL~~~il~~y---g 252 (741)
+ . ++.|-|--| . ...+.|+++.+.|+|+= ||.|.=|-... ..| |
T Consensus 101 ~~aGa~aVkiEd~-----~----------------------~~~~~I~al~~agipV~gHiGL~pq~~~~~--gg~~~~g 151 (254)
T cd06557 101 KEAGADAVKLEGG-----A----------------------EVAETIRALVDAGIPVMGHIGLTPQSVNQL--GGYKVQG 151 (254)
T ss_pred HHhCCeEEEEcCc-----H----------------------HHHHHHHHHHHcCCCeeccccccceeeecc--CCceecc
Confidence 5 4 777777554 1 24567788889998864 67765554321 112 2
Q ss_pred CCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCch
Q 004623 253 DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRM 324 (741)
Q Consensus 253 ~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~I 324 (741)
.| ++-.+.+++-++.+++.|=+=|++-+ ++. +.-+.++++ .+.|+ +|+- ||.+-||-|
T Consensus 152 rt-~~~a~~~i~ra~a~~~AGA~~i~lE~----v~~--~~~~~i~~~-----v~iP~-igiG-aG~~~dgqv 209 (254)
T cd06557 152 KT-EEEAERLLEDALALEEAGAFALVLEC----VPA--ELAKEITEA-----LSIPT-IGIG-AGPDCDGQV 209 (254)
T ss_pred CC-HHHHHHHHHHHHHHHHCCCCEEEEcC----CCH--HHHHHHHHh-----CCCCE-EEec-cCCCCCcee
Confidence 23 34469999999999999999999987 332 466777777 67665 3442 666666654
No 223
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=64.72 E-value=29 Score=37.30 Aligned_cols=131 Identities=18% Similarity=0.300 Sum_probs=85.5
Q ss_pred eEEEc-eeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCC-----EEEEecC--------------CHHH-HHHH
Q 004623 90 TVMVG-NVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGAD-----LVRITVQ--------------GKRE-ADAC 148 (741)
Q Consensus 90 ~V~VG-~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGce-----iVRvavp--------------~~~~-A~al 148 (741)
.|.++ +|.+|++.|..|=. --..-.|.+++.+=..+|.++|.+ ++|.-+- ..+. .+.+
T Consensus 2 ~v~~~~~i~~G~~~~l~via-GPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l 80 (270)
T PF00793_consen 2 RVTVKNDILIGKDKRLLVIA-GPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDIL 80 (270)
T ss_dssp -EEECCTEEETTTSSEEEEE-EESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-TTSSTTST-CSTHHHHHHHH
T ss_pred CccccCCeEecCCCceEEEE-ECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCCccCCCCCCCCCCCccchhH
Confidence 36777 89999998733211 112234778888888889888988 5565432 2344 8899
Q ss_pred HHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHH
Q 004623 149 FEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (741)
Q Consensus 149 ~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ak 228 (741)
.+|++. +.+|++.|+|-..... .+++.+|=+-|-.=|.-+ ..++++|-
T Consensus 81 ~~v~~~-----~glpv~tEv~~~~~~~-~~~d~vd~lqIgAr~~~n--------------------------~~ll~~as 128 (270)
T PF00793_consen 81 SEVKEG-----LGLPVATEVLDPEQAE-YVADLVDWLQIGARLMEN--------------------------QDLLEAAS 128 (270)
T ss_dssp HHHHHH-----HT-EEEEEESSGGGHH-HHHTTESEEEE-GGGTTC--------------------------HHHHHHHH
T ss_pred HHHHhh-----hCCeeeEEecCcccHH-HHHhcCcEEEECcchhcC--------------------------HHHHHHhc
Confidence 999996 7899999999865554 467778888887767644 23667777
Q ss_pred hcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHH
Q 004623 229 KYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (741)
Q Consensus 229 e~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle 264 (741)
..+.|| |+--|-- .++++|..+|..
T Consensus 129 ~~~~pV--~~K~g~~---------~ai~~~~~Aae~ 153 (270)
T PF00793_consen 129 GTGKPV--GFKNGTF---------AAIDEWLAAAEK 153 (270)
T ss_dssp CTSSEE--EEEE-TT---------SHGGGHHHHHHH
T ss_pred cCCCeE--EeccCCc---------cCHHHHHHHHhh
Confidence 888887 5533321 355666665533
No 224
>PRK07094 biotin synthase; Provisional
Probab=64.61 E-value=1.9e+02 Score=31.01 Aligned_cols=132 Identities=10% Similarity=0.120 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~--~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNi 192 (741)
.+.+..++.++.+.+.|..-|-++.-+ .-..+.+.+|.+.+++. .++ .+.+++|..
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l---------------------~i~~~~g~~ 127 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDV---------------------AITLSLGER 127 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCc---------------------eEEEecCCC
Confidence 367888888888999999888886211 11223444444444432 122 134455543
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHC
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~ 272 (741)
- .+.++..|+.|.- |+-++.=|.+++++++++.. .-.+..++.++.+.+.
T Consensus 128 ~---------------------------~e~l~~Lk~aG~~-~v~~glEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~ 177 (323)
T PRK07094 128 S---------------------------YEEYKAWKEAGAD-RYLLRHETADKELYAKLHPG--MSFENRIACLKDLKEL 177 (323)
T ss_pred C---------------------------HHHHHHHHHcCCC-EEEeccccCCHHHHHHhCCC--CCHHHHHHHHHHHHHc
Confidence 1 2345666777754 56677777888999988742 3356777888888899
Q ss_pred CC---CceEEEEecCChhHHHHHHHHHHH
Q 004623 273 DF---HNFLFSMKASNPVVMVQAYRLLVA 298 (741)
Q Consensus 273 ~F---~diviS~KaSnv~~~i~Ayrlla~ 298 (741)
|+ -.+++-+---+.....+..+.+.+
T Consensus 178 Gi~v~~~~iiGlpget~ed~~~~l~~l~~ 206 (323)
T PRK07094 178 GYEVGSGFMVGLPGQTLEDLADDILFLKE 206 (323)
T ss_pred CCeecceEEEECCCCCHHHHHHHHHHHHh
Confidence 98 455666644445666666665554
No 225
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=64.59 E-value=87 Score=38.62 Aligned_cols=157 Identities=17% Similarity=0.252 Sum_probs=93.7
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHhhccCCcc-----cceeeccCCCHHHHHHHhh---hcCceeeCC
Q 004623 119 GTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYN-----IPLVADIHFAPSVALRVAE---CFDKIRVNP 189 (741)
Q Consensus 119 atv~Qi~~L~~-aGceiVRvavp~~~~A~al~~I~~~L~~~~~~-----iPLVADIHF~~~lAl~a~~---~vdkiRINP 189 (741)
.-+.-|++..+ +|+.=|||-+|-...++-+.++++.++..|+. +++++=|= .|..++.+=+ .+|-+=|.|
T Consensus 621 ~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIE-tp~av~~~deIa~~vDfi~IGt 699 (795)
T PRK06464 621 LECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCE-IPSNALLAEEFLEYFDGFSIGS 699 (795)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEc-CHHHHHHHHHHHHhCCEEEECc
Confidence 44566666666 79888999999988888888888877666542 33333222 2444432211 289999999
Q ss_pred CCCCchh----hhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHH
Q 004623 190 GNFADRR----AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (741)
Q Consensus 190 GNig~~~----k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~ 265 (741)
..+.--- +..... ..-|+.....+.+.++.+++.|+++|+|+ |+ +|-.. ++.| +.
T Consensus 700 nDLtq~~lg~dR~n~~v---~~~~~~~hPav~~ai~~vi~aa~~~g~~v--gi-cge~a-------~~~p--------~~ 758 (795)
T PRK06464 700 NDLTQLTLGLDRDSGLV---AHLFDERNPAVKKLISMAIKAAKKAGKYV--GI-CGQAP-------SDHP--------DF 758 (795)
T ss_pred hHHHHHHhCcCCCchhh---hhccCCCCHHHHHHHHHHHHHHHHcCCEE--EE-cCCCC-------CCcH--------HH
Confidence 8764200 000000 01133344566677888999999999987 66 55320 0113 35
Q ss_pred HHHHHHCCCCceEEEEecCChhHHHHHHHHHHHH
Q 004623 266 ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 266 ~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~ 299 (741)
+..+-.+||+.+ ||-+..+..+..+-+.+.++
T Consensus 759 ~~~l~~~G~~~l--s~~~d~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 759 AEWLVEEGIDSI--SLNPDAVVDTWLAVAEVEKK 790 (795)
T ss_pred HHHHHHCCCCEE--EEcchhHHHHHHHHHHhHHH
Confidence 667778999865 44444455555555555444
No 226
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=64.49 E-value=37 Score=37.53 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=49.7
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhh
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~ 301 (741)
.++..|+.|+- ||-+.-=|++++++++.|- .. ++.+++.++.+++.||.+|.+.+=.-=+..+.+..+.-.+...
T Consensus 105 ~l~~l~~~G~n-rislGvQS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~ 180 (370)
T PRK06294 105 YIRALALTGIN-RISIGVQTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAI 180 (370)
T ss_pred HHHHHHHCCCC-EEEEccccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 56888888864 7777678889999999983 22 3445556677888999877665433323344444444444443
Q ss_pred cCC
Q 004623 302 VHG 304 (741)
Q Consensus 302 ~~g 304 (741)
+.+
T Consensus 181 ~l~ 183 (370)
T PRK06294 181 TLP 183 (370)
T ss_pred ccC
Confidence 334
No 227
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=64.37 E-value=56 Score=34.48 Aligned_cols=159 Identities=16% Similarity=0.243 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcc-cceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~-iPLVADIHF~~~lAl~a~~~vdkiRINPGNig 193 (741)
.|++.++..+.+|.+.|-+.+=||..+..+.++++.++++ ++ +=+=|=-=.|+.-+.+|+++=...=+-||==
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~-----~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~- 95 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKE-----FPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLN- 95 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHh-----CcccEEccccccCHHHHHHHHHcCCCEEECCCCC-
Confidence 5889999999999999999999999999999999999997 33 2222445578888888888755556777621
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCC
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~ 273 (741)
.++++.|.++|+|+=-|++ ||.. +-.+.++|
T Consensus 96 ---------------------------~ev~~~a~~~~ip~~PG~~--------------TptE--------i~~Ale~G 126 (211)
T COG0800 96 ---------------------------PEVAKAANRYGIPYIPGVA--------------TPTE--------IMAALELG 126 (211)
T ss_pred ---------------------------HHHHHHHHhCCCcccCCCC--------------CHHH--------HHHHHHcC
Confidence 4599999999999977772 4422 22344577
Q ss_pred CCceEE-EEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCc
Q 004623 274 FHNFLF-SMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGD 340 (741)
Q Consensus 274 F~divi-S~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IKSaiGIG~LL~~GIGD 340 (741)
++-++| ...++--..|+++.. -.|| |+=+-=.|.-..--++.-..+| .+.-|+|-
T Consensus 127 ~~~lK~FPa~~~Gg~~~~ka~~----------gP~~-~v~~~pTGGVs~~N~~~yla~g-v~avG~Gs 182 (211)
T COG0800 127 ASALKFFPAEVVGGPAMLKALA----------GPFP-QVRFCPTGGVSLDNAADYLAAG-VVAVGLGS 182 (211)
T ss_pred hhheeecCccccCcHHHHHHHc----------CCCC-CCeEeecCCCCHHHHHHHHhCC-ceEEecCc
Confidence 776654 555554455555421 2333 1211112222222566666666 66666664
No 228
>PLN02623 pyruvate kinase
Probab=64.36 E-value=71 Score=38.24 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhh----hcCceeeCCCCCCchh
Q 004623 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE----CFDKIRVNPGNFADRR 196 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~----~vdkiRINPGNig~~~ 196 (741)
.+-|+-..+.|+|+|=++ =.+.|+-+.++++.|.+.+-++.++|=|-= ..|++.++ .+|.|=|-||.+|-.-
T Consensus 281 ~~di~f~~~~~vD~ialS--FVr~a~DV~~~r~~l~~~~~~~~iiakIEt--~eaVeNldeIl~g~DgImIgrgDLgvel 356 (581)
T PLN02623 281 WEDIKFGVENKVDFYAVS--FVKDAQVVHELKDYLKSCNADIHVIVKIES--ADSIPNLHSIITASDGAMVARGDLGAEL 356 (581)
T ss_pred HHHHHHHHHcCCCEEEEC--CCCCHHHHHHHHHHHHHcCCcceEEEEECC--HHHHHhHHHHHHhCCEEEECcchhhhhc
Confidence 333555567799996555 344555666666666666778899998754 44443333 4999999999998632
Q ss_pred hhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCch-HHHHHHHHHHHHHHHCC
Q 004623 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPR-GMVESAFEFARICRKLD 273 (741)
Q Consensus 197 k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~-amVeSAle~~~i~e~~~ 273 (741)
.++++.+..++++++|+++|+|+ |+- -.+|+..- .+|. |=| ..+.-+-..|
T Consensus 357 ---------------g~~~v~~~qk~Ii~~~~~~gKpv--iva-----TQMLESMi~~~~PTRAEv----~Dva~av~dG 410 (581)
T PLN02623 357 ---------------PIEEVPLLQEEIIRRCRSMGKPV--IVA-----TNMLESMIVHPTPTRAEV----SDIAIAVREG 410 (581)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHhCCCE--EEE-----CchhhhcccCCCCCchhH----HHHHHHHHcC
Confidence 22566667788999999999999 541 23344433 2331 111 2455566789
Q ss_pred CCceEEEE---ecCChhHHHHHHHHHHHHhhc
Q 004623 274 FHNFLFSM---KASNPVVMVQAYRLLVAEMYV 302 (741)
Q Consensus 274 F~diviS~---KaSnv~~~i~Ayrlla~~m~~ 302 (741)
|+-|.+|. .---|...|+.-+.++.+.++
T Consensus 411 ~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~ 442 (581)
T PLN02623 411 ADAVMLSGETAHGKFPLKAVKVMHTVALRTEA 442 (581)
T ss_pred CCEEEecchhhcCcCHHHHHHHHHHHHHHHHh
Confidence 99999985 344688889999999988775
No 229
>PTZ00081 enolase; Provisional
Probab=64.31 E-value=26 Score=40.15 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhccCCcccceeecc--CCCHHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHHhHH
Q 004623 142 KREADACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 217 (741)
Q Consensus 142 ~~~A~al~~I~~~L~~~~~~iPLVADI--HF~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~ 217 (741)
.++-+.+.++++++ |..+||++|= ..|++-+..+++. ++.|.|-|..+|.-.
T Consensus 308 ~~D~eg~~~Lt~~l---g~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGIT--------------------- 363 (439)
T PTZ00081 308 QDDWEAYAKLTAAI---GQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVT--------------------- 363 (439)
T ss_pred cccHHHHHHHHHhh---CCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHH---------------------
Confidence 35678888888863 2379999994 4578888888874 999999999999744
Q ss_pred HhHHHHHHHHHhcCCeEEEeeccCCCcH
Q 004623 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (741)
Q Consensus 218 e~~~~vv~~ake~g~~IRIGvN~GSL~~ 245 (741)
...++++.|+++|+++=|+--+|.-++
T Consensus 364 -e~l~~a~lA~~~Gi~~iishrsgETed 390 (439)
T PTZ00081 364 -EAIEAAKLAQKNGWGVMVSHRSGETED 390 (439)
T ss_pred -HHHHHHHHHHHcCCcEEEeCCCchhHH
Confidence 256799999999999988766665543
No 230
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=63.94 E-value=2.2e+02 Score=32.35 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCC---CceEEEEecCChhHHHHHHHHHH
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF---HNFLFSMKASNPVVMVQAYRLLV 297 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F---~diviS~KaSnv~~~i~Ayrlla 297 (741)
+++..++.|.- +|-+.-=|.++++|++++... -++...+.++.|++.|+ -++++-+=--+...+.+.++.+.
T Consensus 289 ~l~~l~~aG~~-~v~iGiES~s~~~L~~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~ 363 (472)
T TIGR03471 289 TLKVMKENGLR-LLLVGYESGDQQILKNIKKGL--TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAK 363 (472)
T ss_pred HHHHHHHcCCC-EEEEcCCCCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555555542 333333444566666665210 12345555666677776 23445555555555555444443
No 231
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=63.87 E-value=29 Score=40.18 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=51.4
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceE----EEEecCChhHHHHHHHHHH
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFL----FSMKASNPVVMVQAYRLLV 297 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~div----iS~KaSnv~~~i~Ayrlla 297 (741)
.++..|+.|+- ||-+|-=|.++++++..|-. .-++.+.+.++.+++.||.+|. +-+---+...+.+..+.+.
T Consensus 271 ~L~~Lk~~Gv~-RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~ 346 (488)
T PRK08207 271 KLEVLKKYGVD-RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIE 346 (488)
T ss_pred HHHHHHhcCCC-eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 57888889986 99999999999999999832 2346677788899999997554 4444444444444444443
No 232
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=63.55 E-value=1.2e+02 Score=31.85 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeecc--CCCH-----H-----HHHHHhh
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI--HFAP-----S-----VALRVAE 180 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADI--HF~~-----~-----lAl~a~~ 180 (741)
...|++..++++. +.|++=|=+. |..-.. ..+ + .+.++||+.-+ +|.+ . .+.+|++
T Consensus 34 ~~~~~~~~~~~a~---~~~~~~v~~~-p~~~~~--~~~----~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~ 101 (258)
T TIGR01949 34 GLVDIRKTVNEVA---EGGADAVLLH-KGIVRR--GHR----G--YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIR 101 (258)
T ss_pred CcCCHHHHHHHHH---hcCCCEEEeC-cchhhh--ccc----c--cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHH
Confidence 4457777666554 4577777555 332211 111 1 13567777777 7765 1 1446666
Q ss_pred h-cC--ceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCC-Cch
Q 004623 181 C-FD--KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPR 256 (741)
Q Consensus 181 ~-vd--kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~ 256 (741)
. ++ .+|.|.|.-.. .+.+ +.++++.+.|.++|+|+-|-+. -.|. .+.
T Consensus 102 ~Ga~~v~~~~~~g~~~~------------------~~~~-~~~~~i~~~~~~~g~~liv~~~----------~~Gvh~~~ 152 (258)
T TIGR01949 102 MGADAVSIHVNVGSDTE------------------WEQI-RDLGMIAEICDDWGVPLLAMMY----------PRGPHIDD 152 (258)
T ss_pred CCCCEEEEEEecCCchH------------------HHHH-HHHHHHHHHHHHcCCCEEEEEe----------ccCccccc
Confidence 5 55 78999885211 1223 3477799999999999988221 0010 111
Q ss_pred HHHHHHHHH-HHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 257 GMVESAFEF-ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 257 amVeSAle~-~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
+-...+++ ++++.+.|-+=|.+|.|. -++..+.+++. ..-|+
T Consensus 153 -~~~~~~~~~~~~a~~~GADyikt~~~~-----~~~~l~~~~~~-----~~iPV 195 (258)
T TIGR01949 153 -RDPELVAHAARLGAELGADIVKTPYTG-----DIDSFRDVVKG-----CPAPV 195 (258)
T ss_pred -ccHHHHHHHHHHHHHHCCCEEeccCCC-----CHHHHHHHHHh-----CCCcE
Confidence 11122333 588888999999988652 25556666665 45555
No 233
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=63.50 E-value=24 Score=39.76 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhccCCcccceeeccCC--CHHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHh
Q 004623 144 EADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEV 219 (741)
Q Consensus 144 ~A~al~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~ 219 (741)
+-+.+.++++++ |.++||++|=.| +++-+..+++. ++-|.|-|..+|.-. .
T Consensus 290 D~eg~~~L~~~~---g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGit----------------------e 344 (408)
T cd03313 290 DWEGWAKLTAKL---GDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLT----------------------E 344 (408)
T ss_pred CHHHHHHHHHhc---CCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH----------------------H
Confidence 345555565542 348999999654 78888888774 999999999999843 3
Q ss_pred HHHHHHHHHhcCCeEEEe
Q 004623 220 FSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIG 237 (741)
..++++.|+.+|+++=+|
T Consensus 345 ~~~ia~lA~~~G~~~~~s 362 (408)
T cd03313 345 TIEAIKLAKKNGYGVVVS 362 (408)
T ss_pred HHHHHHHHHHcCCeEEcc
Confidence 577899999999987554
No 234
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=63.27 E-value=62 Score=35.28 Aligned_cols=154 Identities=13% Similarity=0.240 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHhhccCCcccceeeccCCCH----HHHHHHhhh-c
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAP----SVALRVAEC-F 182 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~-------A~al~~I~~~L~~~~~~iPLVADIHF~~----~lAl~a~~~-v 182 (741)
.+.+-+-.-|...++.++-++=-..|+.-. +..+....+ .+.+|++ +|.|| .....|++. +
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~-----~~~vPV~--lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 26 TNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHAD-----KMDVPVS--LHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHH-----HCCCCEE--EECcCCCCHHHHHHHHHcCC
Confidence 456666666777777777766555554322 222333333 3778876 67775 455566665 6
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE--EEeeccCCCcHHH--HhhcCCCchHH
Q 004623 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSLSDRI--MSYYGDSPRGM 258 (741)
Q Consensus 183 dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I--RIGvN~GSL~~~i--l~~yg~t~~am 258 (741)
..|=|- +. ..+|++-++. .+++|+.|+.+|+++ -||.=.|.=+... -..| .+|
T Consensus 99 tSVM~D------gS---------~l~~eeNi~~----T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~-T~p--- 155 (283)
T PRK07998 99 TSVMID------GA---------ALPFEENIAF----TKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCK-TEP--- 155 (283)
T ss_pred CEEEEe------CC---------CCCHHHHHHH----HHHHHHHHHHcCCEEEEEeccCCCcccccccccccc-CCH---
Confidence 666551 11 1223333333 667999999999998 5554322211100 1112 234
Q ss_pred HHHHHHHHHHHHHCCCCceEEEE-------ecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 259 VESAFEFARICRKLDFHNFLFSM-------KASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 259 VeSAle~~~i~e~~~F~diviS~-------KaSnv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
+.| .+.+++.|-+-+.+|. |. +..-.+--+.+.+. .+.||
T Consensus 156 -e~a---~~Fv~~TgvD~LAvaiGt~HG~Y~~--p~l~~~~l~~I~~~-----~~vPL 202 (283)
T PRK07998 156 -EKV---KDFVERTGCDMLAVSIGNVHGLEDI--PRIDIPLLKRIAEV-----SPVPL 202 (283)
T ss_pred -HHH---HHHHHHhCcCeeehhccccccCCCC--CCcCHHHHHHHHhh-----CCCCE
Confidence 334 4455666777777776 32 33334555555555 45554
No 235
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=63.27 E-value=1.7e+02 Score=33.28 Aligned_cols=136 Identities=11% Similarity=0.205 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEec----CCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeC
Q 004623 116 DVAGTVEEVMRIADQ---GADLVRITV----QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (741)
Q Consensus 116 Dv~atv~Qi~~L~~a---GceiVRvav----p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRIN 188 (741)
.+++-+++|..+.+. +..+-+|.+ |+.-..+.+.+|.+.+++. .|+..|+.+ .+..|
T Consensus 82 y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~---~~~~~~~ei-------------tie~n 145 (455)
T TIGR00538 82 YLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIREN---FPFNADAEI-------------SIEID 145 (455)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHHHHHHh---CCCCCCCeE-------------EEEec
Confidence 578888888877542 134555553 4432334444444443322 233222211 25679
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCC-CchHHHHHHHHHHH
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 267 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~ 267 (741)
|..+-+ +.++..|+.|+ .||-+.-=|+++++++.++- .. .+.+.+.++
T Consensus 146 p~~l~~---------------------------e~l~~lk~~G~-~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~ 194 (455)
T TIGR00538 146 PRYITK---------------------------DVIDALRDEGF-NRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMN 194 (455)
T ss_pred cCcCCH---------------------------HHHHHHHHcCC-CEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHH
Confidence 998832 35677777785 47777778899999999873 22 456677788
Q ss_pred HHHHCCCCceEEE----EecCChhHHHHHHHHHHH
Q 004623 268 ICRKLDFHNFLFS----MKASNPVVMVQAYRLLVA 298 (741)
Q Consensus 268 i~e~~~F~diviS----~KaSnv~~~i~Ayrlla~ 298 (741)
.|.+.||.++-++ +---+...+.+..+.+.+
T Consensus 195 ~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 195 HAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAE 229 (455)
T ss_pred HHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHh
Confidence 8999999755444 444444444444444443
No 236
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=63.02 E-value=2e+02 Score=30.21 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=92.8
Q ss_pred HHHHHcCCCEEEEe---------cCC------HHHHHHHHHHHHhhccCCcccceeeccCC---CHHHHHH----Hhhh-
Q 004623 125 MRIADQGADLVRIT---------VQG------KREADACFEIKNSLVQKNYNIPLVADIHF---APSVALR----VAEC- 181 (741)
Q Consensus 125 ~~L~~aGceiVRva---------vp~------~~~A~al~~I~~~L~~~~~~iPLVADIHF---~~~lAl~----a~~~- 181 (741)
+-++++|++.+=++ .|| .+-...++.|.+ ..++|+++|+-| +..-+.+ .++.
T Consensus 23 ~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~-----~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G 97 (243)
T cd00377 23 RLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIAR-----AVDLPVIADADTGYGNALNVARTVRELEEAG 97 (243)
T ss_pred HHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHh-----hccCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 44567799988776 343 355666777777 478999999999 5433332 3333
Q ss_pred cCceeeCCC----CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHh-cCCeEEEeeccCCCcHHHHhhcCCCch
Q 004623 182 FDKIRVNPG----NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (741)
Q Consensus 182 vdkiRINPG----Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake-~g~~IRIGvN~GSL~~~il~~yg~t~~ 256 (741)
++.|=|.-+ .-|.-. +...++.||+.+ +++..++.++. -+..|=-++.+=.. | +.
T Consensus 98 ~~gv~iED~~~~k~~g~~~---~~~~~~~ee~~~-------ki~aa~~a~~~~~~~~IiARTDa~~~--------~--~~ 157 (243)
T cd00377 98 AAGIHIEDQVGPKKCGHHG---GKVLVPIEEFVA-------KIKAARDARDDLPDFVIIARTDALLA--------G--EE 157 (243)
T ss_pred CEEEEEecCCCCccccCCC---CCeecCHHHHHH-------HHHHHHHHHhccCCeEEEEEcCchhc--------c--CC
Confidence 777777322 222111 112345555544 34445555555 34444333221111 0 11
Q ss_pred HHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccC
Q 004623 257 GMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG 317 (741)
Q Consensus 257 amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG 317 (741)
+ ++.|++.++...+.|=+=+-+-... ..+-++.++++ .+-|+-+-.|+-+
T Consensus 158 ~-~~eai~Ra~ay~~AGAD~v~v~~~~-----~~~~~~~~~~~-----~~~Pl~~~~~~~~ 207 (243)
T cd00377 158 G-LDEAIERAKAYAEAGADGIFVEGLK-----DPEEIRAFAEA-----PDVPLNVNMTPGG 207 (243)
T ss_pred C-HHHHHHHHHHHHHcCCCEEEeCCCC-----CHHHHHHHHhc-----CCCCEEEEecCCC
Confidence 2 6779999999999997655553322 44777888888 7889988877655
No 237
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=63.01 E-value=16 Score=40.90 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCEEEEe------cCC-------HHHHHHHHHHHHhhccCCcccceeec--cCCCHHHHHHHhhhcC
Q 004623 119 GTVEEVMRIADQGADLVRIT------VQG-------KREADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAECFD 183 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRva------vp~-------~~~A~al~~I~~~L~~~~~~iPLVAD--IHF~~~lAl~a~~~vd 183 (741)
.|-++.++|.++|+|.|+|. .-+ .-...++.++.+... +..+|+||| |++...++.+-+-..+
T Consensus 159 ~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gDI~KALA~GAd 236 (343)
T TIGR01305 159 VTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAH--GLKGHIISDGGCTCPGDVAKAFGAGAD 236 (343)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhHHHHHHHcCCC
Confidence 46788889999999999987 111 137788888888654 467999999 7777777743222266
Q ss_pred ceeeC
Q 004623 184 KIRVN 188 (741)
Q Consensus 184 kiRIN 188 (741)
.+=|-
T Consensus 237 ~VMlG 241 (343)
T TIGR01305 237 FVMLG 241 (343)
T ss_pred EEEEC
Confidence 66554
No 238
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=62.88 E-value=14 Score=39.53 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=53.5
Q ss_pred cCCCCceEEEeccCCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCH---------------------------HHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDT--KDVAGTVEEVMRIADQGADLVRITVQGK---------------------------READAC 148 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T--~Dv~atv~Qi~~L~~aGceiVRvavp~~---------------------------~~A~al 148 (741)
++|.+=|-+.=-...+| -|.-.|++-.+.|.+-|..+.=.+.+|. ..-.+|
T Consensus 88 ~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 88 AFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp TTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH
T ss_pred HcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHH
Confidence 34555555555555554 6888888776666555555555555554 344567
Q ss_pred HHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCCC
Q 004623 149 FEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGN 191 (741)
Q Consensus 149 ~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPGN 191 (741)
+.|+++ +++|+|-|---. |.=|-.|+|. +|.|=+|-.=
T Consensus 168 ~~i~~~-----~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAi 207 (247)
T PF05690_consen 168 RIIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAI 207 (247)
T ss_dssp HHHHHH-----GSSSBEEES---SHHHHHHHHHTT-SEEEESHHH
T ss_pred HHHHHh-----cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHH
Confidence 778886 789999996554 6677789997 9999999653
No 239
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.79 E-value=41 Score=38.05 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=40.5
Q ss_pred ccceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 161 NIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 161 ~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
++|+.+|=+ |+..-+...++ ++|-+.+.|..+|.-. .+.++...|..+|+++
T Consensus 294 ~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit----------------------~~~kia~lA~a~gi~~ 348 (415)
T cd03324 294 PIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVN----------------------ENLAVLLMAAKFGVPV 348 (415)
T ss_pred CCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCeE
Confidence 699999954 45544445454 4999999999999733 3678999999999988
No 240
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=62.68 E-value=36 Score=37.36 Aligned_cols=68 Identities=15% Similarity=0.281 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--C--HHHHHHHHHHHHhhccCCcccceeeccCCCH--HHHHHHhhhcCce
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQ--G--KREADACFEIKNSLVQKNYNIPLVADIHFAP--SVALRVAECFDKI 185 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp--~--~~~A~al~~I~~~L~~~~~~iPLVADIHF~~--~lAl~a~~~vdki 185 (741)
.+.+..++++.+..+.|.+-+.+.+- + .++.+.+..|++. -|-+++|..|.|-.+ .-|++.++.++++
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~---~G~~~~l~vDan~~~~~~~A~~~~~~l~~~ 215 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREA---VGPDMRLMHDGAHWYSRADALRLGRALEEL 215 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHH---hCCCCeEEEECCCCcCHHHHHHHHHHhhhc
Confidence 37788999999999999999999753 1 4567777888774 356799999998655 5555555555543
No 241
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=62.58 E-value=54 Score=36.10 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=77.2
Q ss_pred HHHHHHHHHH-HHcCCCEEEEecCC---------------HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh
Q 004623 118 AGTVEEVMRI-ADQGADLVRITVQG---------------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (741)
Q Consensus 118 ~atv~Qi~~L-~~aGceiVRvavp~---------------~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 181 (741)
-.+.++++++ +++|+.++|=+.=+ ++--+-|.++|++ +.+|+|.|+|-...+. .+++.
T Consensus 33 ~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~-----~glpvvTeV~~~~q~~-~vae~ 106 (290)
T PLN03033 33 LRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVA-----YDLPIVTDVHESSQCE-AVGKV 106 (290)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----HCCceEEeeCCHHHHH-HHHhh
Confidence 4455555554 34699999987654 5777889999997 8999999999866555 66778
Q ss_pred cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCchHHH
Q 004623 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMV 259 (741)
Q Consensus 182 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amV 259 (741)
+|=+-|--=|.- =..++++|.+.|+||= ++| | .+|+.|.
T Consensus 107 ~DilQIgAr~~r--------------------------qtdLL~a~~~tgkpV~------------lKk-Gq~~t~~e~~ 147 (290)
T PLN03033 107 ADIIQIPAFLCR--------------------------QTDLLVAAAKTGKIIN------------IKK-GQFCAPSVMR 147 (290)
T ss_pred CcEEeeCcHHHH--------------------------HHHHHHHHHccCCeEE------------eCC-CCCCCHHHHH
Confidence 899998665551 1447788888899882 222 4 5787776
Q ss_pred HHHHHHHHHHHHCCCCceEE
Q 004623 260 ESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 260 eSAle~~~i~e~~~F~divi 279 (741)
-+|. .+...|=++|.+
T Consensus 148 ~aae----ki~~~GN~~viL 163 (290)
T PLN03033 148 NSAE----KVRLAGNPNVMV 163 (290)
T ss_pred HHHH----HHHHcCCCcEEE
Confidence 6553 333444444443
No 242
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=62.52 E-value=3.2e+02 Score=32.29 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~--~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGN 191 (741)
.-..+.-++=++.|.++|.+++=+..|. .+++++++.|.+.+...+ +..+. .+| |
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~-------~~~~~---------------l~~-~ 158 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEV-------DEETG---------------YVP-V 158 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhccccc-------ccccc---------------cce-E
Confidence 3556777778888999999999998874 677888888876422100 00000 000 1
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~ 271 (741)
+.. |..-. ++-++..++.-+.-+.+ ||++-.+.=+-.+..+++-+.+..++.+.+.++.+.+
T Consensus 159 i~a----~~R~~-------------~~dId~a~~a~~~a~~~-~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~ 220 (503)
T PLN03228 159 ICG----IARCK-------------KRDIEAAWEALKYAKRP-RILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKS 220 (503)
T ss_pred Eee----ecccC-------------HhhHHHHHHhhcccCCC-EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 100 00000 00012222211111222 7776333334444567788999999999999999999
Q ss_pred CCCCceEEEE
Q 004623 272 LDFHNFLFSM 281 (741)
Q Consensus 272 ~~F~diviS~ 281 (741)
+|++.+.|++
T Consensus 221 ~G~~~v~f~~ 230 (503)
T PLN03228 221 LGFHDIQFGC 230 (503)
T ss_pred cCCceEEecc
Confidence 9998788888
No 243
>PRK01060 endonuclease IV; Provisional
Probab=62.31 E-value=2e+02 Score=29.81 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=57.1
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHhhccCCcccc-eeeccCCCHHHHHHHh
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQKNYNIP-LVADIHFAPSVALRVA 179 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~-------~~A~al~~I~~~L~~~~~~iP-LVADIHF~~~lAl~a~ 179 (741)
+||++. .|++.+ +..++++|.|-|=+.+.+. -..+.+.++|+.+.+.|..+. ++. |-.|
T Consensus 6 ~~~~~~-~~~~~~---l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~--h~~~------- 72 (281)
T PRK01060 6 AHVSAA-GGLEGA---VAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILV--HAPY------- 72 (281)
T ss_pred EeeecC-CCHHHH---HHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEE--ecce-------
Confidence 344433 345554 4667778999986655322 133446667777777777643 332 3322
Q ss_pred hhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC
Q 004623 180 ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 180 ~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 242 (741)
+.|+++.+. +..++-.+.++..++.|++.|.+ .|.+..|.
T Consensus 73 ---------~~nl~~~d~-------------~~r~~s~~~~~~~i~~A~~lga~-~vv~h~G~ 112 (281)
T PRK01060 73 ---------LINLGNPNK-------------EILEKSRDFLIQEIERCAALGAK-LLVFHPGS 112 (281)
T ss_pred ---------EecCCCCCH-------------HHHHHHHHHHHHHHHHHHHcCCC-EEEEcCCc
Confidence 245544221 12233344567799999999998 46666665
No 244
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.91 E-value=64 Score=36.36 Aligned_cols=102 Identities=12% Similarity=0.163 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHH--cCCCEEEEecCCHH---HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCcee--eCC
Q 004623 118 AGTVEEVMRIAD--QGADLVRITVQGKR---EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNP 189 (741)
Q Consensus 118 ~atv~Qi~~L~~--aGceiVRvavp~~~---~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR--INP 189 (741)
+...+.+.+|.+ +|+|.|=|-+-+-. ..+.+++||+. --++++||====.+..|..-+++ +|.|| |-|
T Consensus 107 ~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~----~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGp 182 (346)
T PRK05096 107 DADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA----WPDKTICAGNVVTGEMVEELILSGADIVKVGIGP 182 (346)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh----CCCCcEEEecccCHHHHHHHHHcCCCEEEEcccC
Confidence 356788889988 59999988876554 44455666664 22489998877778888888887 88777 889
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
|-|--.+.. |--=|- . -..+.+..++|+++|+||
T Consensus 183 GSiCtTr~v------tGvG~P-Q----ltAV~~~a~~a~~~gvpi 216 (346)
T PRK05096 183 GSVCTTRVK------TGVGYP-Q----LSAVIECADAAHGLGGQI 216 (346)
T ss_pred CccccCccc------cccChh-H----HHHHHHHHHHHHHcCCCE
Confidence 977432210 000000 0 113556778888889887
No 245
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=61.90 E-value=1.4e+02 Score=32.38 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.4
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHH
Q 004623 124 VMRIADQGADLVRITVQGKREADACFE 150 (741)
Q Consensus 124 i~~L~~aGceiVRvavp~~~~A~al~~ 150 (741)
++.+.++|+. .++|.+..+|+.+.+
T Consensus 49 ~~~~~~~G~~--~~~vas~~Ea~~~~~ 73 (361)
T cd06821 49 VRLQLEAGIT--KFKCATIAEAEMLAE 73 (361)
T ss_pred HHHHHhcCCC--cEEEecHHHHHHHHH
Confidence 3445678874 789999999987654
No 246
>PRK14057 epimerase; Provisional
Probab=61.70 E-value=96 Score=33.51 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHhhccCCcc-----cceeeccCCCHHH
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYN-----IPLVADIHFAPSV 174 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~-~~A~al~~I~~~L~~~~~~-----iPLVADIHF~~~l 174 (741)
..|+-|.=|.+. --..|..++++|||+|=+-+-.. .-.+.|..||+. |++ .++-|=+=+||.-
T Consensus 75 ~~p~DvHLMV~~-------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~----G~k~~~~~~~~kaGlAlnP~T 143 (254)
T PRK14057 75 TFIKDVHLMVAD-------QWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQ----TVPVIGGEMPVIRGISLCPAT 143 (254)
T ss_pred CCCeeEEeeeCC-------HHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHc----CCCcccccccceeEEEECCCC
Confidence 357788888773 23467889999999887765522 234566666663 542 2233444455544
Q ss_pred HHHHhh----hcCcee---eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHH
Q 004623 175 ALRVAE----CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI 247 (741)
Q Consensus 175 Al~a~~----~vdkiR---INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~i 247 (741)
-++.++ .+|.|= +|||-=|- +|..- -++ |++++-+.-+++|..++|.| -|+++.+-
T Consensus 144 p~e~i~~~l~~vD~VLvMtV~PGfgGQ---~Fi~~---------~l~----KI~~lr~~~~~~~~~~~IeV-DGGI~~~t 206 (254)
T PRK14057 144 PLDVIIPILSDVEVIQLLAVNPGYGSK---MRSSD---------LHE----RVAQLLCLLGDKREGKIIVI-DGSLTQDQ 206 (254)
T ss_pred CHHHHHHHHHhCCEEEEEEECCCCCch---hccHH---------HHH----HHHHHHHHHHhcCCCceEEE-ECCCCHHH
Confidence 444444 466554 79997764 23322 233 44445566667888899999 45565543
Q ss_pred H
Q 004623 248 M 248 (741)
Q Consensus 248 l 248 (741)
.
T Consensus 207 i 207 (254)
T PRK14057 207 L 207 (254)
T ss_pred H
Confidence 3
No 247
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=61.62 E-value=1e+02 Score=35.50 Aligned_cols=142 Identities=20% Similarity=0.294 Sum_probs=88.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCC
Q 004623 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 110 t~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINP 189 (741)
|..+..|++.-++.++...++|||- +-|..-.-.|.+|++.+.+ .+++|+=. . ==|..+.++.+
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADt----iMDLStGgdl~~iR~~il~-~s~vpvGT-V-PiYqa~~~~~~--------- 132 (423)
T TIGR00190 69 TSADTSDIEEEVEKALIAIKYGADT----VMDLSTGGDLDEIRKAILD-AVPVPVGT-V-PIYQAAEKVHG--------- 132 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCHHHHHHHHHH-cCCCCccC-c-cHHHHHHHhcC---------
Confidence 5678899999999999999999994 3444455567788887765 34444300 0 00555544321
Q ss_pred CCCCchhhhccccccchHHHHHHHHh-HHH----------hHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC-CCchH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQH-IEE----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRG 257 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~-I~e----------~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg-~t~~a 257 (741)
++.+ .|.+++-+.+|+ .++ --++.++.+|+.++-+-|=--.||+=-..|...+ .+|
T Consensus 133 -~~~~---------mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENP-- 200 (423)
T TIGR00190 133 -AVED---------MDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENP-- 200 (423)
T ss_pred -Chhh---------CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCc--
Confidence 3322 334444444332 222 1356888888888888777778888777777766 344
Q ss_pred HHHHHHHHHHHHHHCCCCceEEEEe
Q 004623 258 MVESAFEFARICRKLDFHNFLFSMK 282 (741)
Q Consensus 258 mVeSAle~~~i~e~~~F~diviS~K 282 (741)
+-|-==+-++||.+ +|+.+|+=
T Consensus 201 lye~fD~lLeI~~~---yDVtlSLG 222 (423)
T TIGR00190 201 LYKNFDYILEIAKE---YDVTLSLG 222 (423)
T ss_pred hHHHHHHHHHHHHH---hCeeeecc
Confidence 44444445666666 45688873
No 248
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=61.44 E-value=21 Score=41.85 Aligned_cols=96 Identities=27% Similarity=0.444 Sum_probs=67.2
Q ss_pred hhcccCcceeecCCCCccccc----cHHHHHHHHHHHhc--CCC--CcEEEEeeeeecCCCCCCCCceeeecCCCceeEe
Q 004623 633 CRMRNTKTEYVSCPSCGRTLF----DLQEISAEIREKTS--HLP--GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDL 704 (741)
Q Consensus 633 ~rlR~~kte~ISCPsCGRTlf----DLq~~~~~Ik~~t~--hLk--gvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~L 704 (741)
+++|.+-.--+.-|+||-... =+-.++.++++.+. .|+ .+.+-+-||- ||=+----||+|.||-+|+..++
T Consensus 491 s~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~dsIvmr~TGCP-NgCsrp~vaeig~vGkapnty~~ 569 (638)
T KOG0560|consen 491 SGLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRDSIVMRMTGCP-NGCSRPWVAEIGLVGKAPNTYNL 569 (638)
T ss_pred hhhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCCceEEEeccCC-CCCCcchhhheeecccCCcceee
Confidence 345655544444588995422 24566777777553 344 4778888995 88888889999999999999999
Q ss_pred eecceee--------eecCChhHHHHHHHHHHH
Q 004623 705 YVGKTVV--------KRGIAMEQATDALIQLIK 729 (741)
Q Consensus 705 Y~gke~V--------~r~Ipeeeavd~Li~lIk 729 (741)
.-|+..+ ++++..+++.+-+..+++
T Consensus 570 ~lgG~p~~~~l~k~~~~~vkd~ei~~i~kpl~k 602 (638)
T KOG0560|consen 570 MLGGGPVGQRLNKLYGRIVKDSEIGEIYKPLFK 602 (638)
T ss_pred ecCCcchHHHHHHHHhccccHHHHHHHHhhhhh
Confidence 8887665 456788888775554444
No 249
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=61.38 E-value=25 Score=38.47 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec-C------------CHHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cC
Q 004623 119 GTVEEVMRIADQGADLVRITV-Q------------GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvav-p------------~~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vd 183 (741)
.|.++.+.+.++|+|.|.+.. | +.-...++.++.+.+. .+++|+|||--.. +.-+.+|+.. ++
T Consensus 144 ~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~--~~~vpVIA~GGI~~~~di~kAla~GA~ 221 (325)
T cd00381 144 VTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR--DYGVPVIADGGIRTSGDIVKALAAGAD 221 (325)
T ss_pred CCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 567888999999999999831 1 1123445555555433 2579999975554 4555566666 77
Q ss_pred ceee
Q 004623 184 KIRV 187 (741)
Q Consensus 184 kiRI 187 (741)
.|=+
T Consensus 222 ~Vmi 225 (325)
T cd00381 222 AVML 225 (325)
T ss_pred EEEe
Confidence 7766
No 250
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.15 E-value=3.1 Score=44.20 Aligned_cols=20 Identities=50% Similarity=1.036 Sum_probs=15.9
Q ss_pred hcccCcceeecCCCCcccccc
Q 004623 634 RMRNTKTEYVSCPSCGRTLFD 654 (741)
Q Consensus 634 rlR~~kte~ISCPsCGRTlfD 654 (741)
.+|. +-+.+-||.|||.||=
T Consensus 214 ~V~~-~d~iv~CP~CgRILy~ 233 (239)
T COG1579 214 KVRK-KDEIVFCPYCGRILYY 233 (239)
T ss_pred HHhc-CCCCccCCccchHHHh
Confidence 4455 6699999999998773
No 251
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=61.04 E-value=28 Score=31.34 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHHhcccc
Q 004623 657 EISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRW 734 (741)
Q Consensus 657 ~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ipeeeavd~Li~lIk~~g~W 734 (741)
.-+..+.+++..-|+++|-..||. ||.|--.-+--.|++++.|. +-..||+++.+.+.|+++-.|
T Consensus 14 ~g~~~~~~~Le~~p~~~Vie~gCl------------~~Cg~C~~~pFAlVnG~~V~-A~t~eeL~~kI~~~i~e~~~~ 78 (78)
T PF07293_consen 14 SGTDQVYEKLEKDPDIDVIEYGCL------------SYCGPCAKKPFALVNGEIVA-AETAEELLEKIKEKIEENPMF 78 (78)
T ss_pred hhhHHHHHHHhcCCCccEEEcChh------------hhCcCCCCCccEEECCEEEe-cCCHHHHHHHHHHHHhcccCC
Confidence 345566677766799999999995 56665333444677889998 789999999999999987544
No 252
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=60.90 E-value=2.8e+02 Score=31.02 Aligned_cols=205 Identities=15% Similarity=0.165 Sum_probs=112.4
Q ss_pred eEEEceeecCCCCceEEEeccC--CCCCC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHH
Q 004623 90 TVMVGNVAIGSEHPIRVQTMTT--NDTKD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADA 147 (741)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~--t~T~D---v~atv~Qi~~L~~aGceiVRva-----------------vp~~~~A~a 147 (741)
.++||++.+ .|-|..-.|++ ....| .+..++=..+.+ |+-+| ++ .-+.+...+
T Consensus 6 P~~ig~~~l--kNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA--g~GLI-i~e~~~v~~~~~~~~~~~~l~~d~~i~~ 80 (362)
T PRK10605 6 PLKVGAITA--PNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA--SAGLI-ISEATQISAQAKGYAGAPGLHSPEQIAA 80 (362)
T ss_pred CeeECCEEe--ccccEECCcCcCccCCCCCCCCHHHHHHHHHHh--CCCEE-EECceeeCcccccCCCCCcccCHHHHHH
Confidence 467777777 78899999975 22234 566666666655 55555 22 124567899
Q ss_pred HHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhh--------------hccccccchHHHHHHH
Q 004623 148 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRA--------------QFEQLEYTDDEYQKEL 213 (741)
Q Consensus 148 l~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k--------------~f~~~~Ytdeey~~el 213 (741)
++++.+..++.|+. +++=+|...+.+......-.+.-+-|..+-.... .....+.| .+|+
T Consensus 81 ~~~lad~vH~~Ga~--i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt----~~eI 154 (362)
T PRK10605 81 WKKITAGVHAEGGH--IAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE----LEEI 154 (362)
T ss_pred HHHHHHHHHhCCCE--EEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC----HHHH
Confidence 99999999998874 5666655444432211000001133333311100 00112222 3455
Q ss_pred HhHHHhHHHHHHHHHhcCCe-EEEeeccCCCcHHHHhh--------cCCCchHHHHHHHHHHHHHHH-CCCCceEEEEec
Q 004623 214 QHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMSY--------YGDSPRGMVESAFEFARICRK-LDFHNFLFSMKA 283 (741)
Q Consensus 214 e~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il~~--------yg~t~~amVeSAle~~~i~e~-~~F~diviS~Ka 283 (741)
++|.+.|..=.+.|++-|.- |=|=..||.|-..+|+- ||.+.|.=..=.+|-++-.++ .| .++ |.+|-
T Consensus 155 ~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg-~~~-igvRi 232 (362)
T PRK10605 155 PGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWG-ADR-IGIRI 232 (362)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcC-CCe-EEEEE
Confidence 66666676666667766653 55566899998887764 776665555555555554433 33 333 67776
Q ss_pred CChh--------HHHHH-HHHHHHHhhcCCCCc
Q 004623 284 SNPV--------VMVQA-YRLLVAEMYVHGWDY 307 (741)
Q Consensus 284 Snv~--------~~i~A-yrlla~~m~~~g~dy 307 (741)
|-.. .+.+- ...+++.+++.|+||
T Consensus 233 s~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~ 265 (362)
T PRK10605 233 SPLGTFNNVDNGPNEEADALYLIEQLGKRGIAY 265 (362)
T ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 5210 12222 345555555556655
No 253
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=60.58 E-value=1.2e+02 Score=32.91 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=16.5
Q ss_pred HHHHcCCCEEEEecCCHHHHHHHH
Q 004623 126 RIADQGADLVRITVQGKREADACF 149 (741)
Q Consensus 126 ~L~~aGceiVRvavp~~~~A~al~ 149 (741)
.|.++||+ .+.|.+.++|..+.
T Consensus 47 ~l~~~G~~--~~~vas~~Ea~~~~ 68 (367)
T cd00430 47 ALEEAGAD--YFAVATLEEALELR 68 (367)
T ss_pred HHHHCCCC--EEEECcHHHHHHHH
Confidence 46678986 67888888887654
No 254
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=60.54 E-value=17 Score=38.64 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh
Q 004623 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (741)
Q Consensus 219 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 287 (741)
.+++.++.|+++|+++=-| |.|-...+.+ .+.-++++.|.++||+-|-||-=+-+.+
T Consensus 42 ~l~eki~la~~~~V~v~~G---Gtl~E~~~~q---------~~~~~Yl~~~k~lGf~~IEiS~G~~~i~ 98 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPG---GTLFEIAHSK---------GKFDEYLNECDELGFEAVEISDGSMEIS 98 (237)
T ss_pred HHHHHHHHHHHcCCeEeCC---ccHHHHHHHh---------hhHHHHHHHHHHcCCCEEEEcCCccCCC
Confidence 4788999999999999666 5554333322 2334699999999999999997666544
No 255
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=60.41 E-value=1.7e+02 Score=33.01 Aligned_cols=131 Identities=16% Similarity=0.268 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH-------HHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCce
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREA-------DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A-------~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdki 185 (741)
..++++..++++++|.+.|+.-|.++-++.-.- ..|.++-+.|.+ + .....|
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~----~-----------------~~~~~i 209 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD----I-----------------PGLLRI 209 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh----c-----------------CCccEE
Confidence 367789999999999999998888885553210 112222221110 0 112235
Q ss_pred ee---CCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC---CeEEEeeccCCCcHHHHhhcCC-CchHH
Q 004623 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGD-SPRGM 258 (741)
Q Consensus 186 RI---NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g---~~IRIGvN~GSL~~~il~~yg~-t~~am 258 (741)
|+ +|.++.+ ++++..++.+ ..+=||+-|| ++++|++++- ..
T Consensus 210 r~~~~~p~~i~~---------------------------ell~~l~~~~~~~~~l~lglQSg--sd~vLk~M~R~~~--- 257 (418)
T PRK14336 210 RFLTSHPKDISQ---------------------------KLIDAMAHLPKVCRSLSLPVQAG--DDTILAAMRRGYT--- 257 (418)
T ss_pred EEeccChhhcCH---------------------------HHHHHHHhcCccCCceecCCCcC--CHHHHHHhCCCCC---
Confidence 53 5555521 2344444432 3455677766 7899999873 22
Q ss_pred HHHHHHHHHHHHHC--CC---CceEEEEecCChhHHHHHHHHH
Q 004623 259 VESAFEFARICRKL--DF---HNFLFSMKASNPVVMVQAYRLL 296 (741)
Q Consensus 259 VeSAle~~~i~e~~--~F---~diviS~KaSnv~~~i~Ayrll 296 (741)
.+..++.++.+++. |+ .++++-.---+...+.+.++.+
T Consensus 258 ~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi 300 (418)
T PRK14336 258 NQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLM 300 (418)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 45666677777776 66 2666666444334344444443
No 256
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=60.28 E-value=77 Score=41.00 Aligned_cols=123 Identities=21% Similarity=0.238 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHH-HHhhccCCcccceeeccCC-C--HH--------HHHHHhhh--c
Q 004623 118 AGTVEEVMRIADQGADLVRI-TVQGKREADACFEI-KNSLVQKNYNIPLVADIHF-A--PS--------VALRVAEC--F 182 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRv-avp~~~~A~al~~I-~~~L~~~~~~iPLVADIHF-~--~~--------lAl~a~~~--v 182 (741)
+.--+|+..|.++|+|++=+ |+||..++++.-.. ++-+.+.+.++|++.=..| + .+ .+..+++. +
T Consensus 164 ~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~ 243 (1229)
T PRK09490 164 AAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKP 243 (1229)
T ss_pred HHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCC
Confidence 44578999999999999999 79999998866544 4444566788999987777 2 12 22222332 4
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhc-CCeEEEeeccCCCcHHHHhhcCCCchHHHHH
Q 004623 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (741)
Q Consensus 183 dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~-g~~IRIGvN~GSL~~~il~~yg~t~~amVeS 261 (741)
+.|=+|=+ .+.. .+.++++...+. ++||=+=-|+| |+. ....|..+|+.|.+.
T Consensus 244 ~avGlNCs---~GP~---------------------~m~~~l~~l~~~~~~pi~vyPNAG-lP~-~~~~yd~tPe~~a~~ 297 (1229)
T PRK09490 244 LSIGLNCA---LGAD---------------------ELRPYVEELSRIADTYVSAHPNAG-LPN-AFGEYDETPEEMAAQ 297 (1229)
T ss_pred CEEEEcCC---CcHH---------------------HHHHHHHHHHHhcCCeEEEEeCCC-CCC-CCCCCCCCHHHHHHH
Confidence 44444432 1111 233444444322 56776667998 443 344676689888877
Q ss_pred HHHHH
Q 004623 262 AFEFA 266 (741)
Q Consensus 262 Ale~~ 266 (741)
+.+++
T Consensus 298 ~~~~~ 302 (1229)
T PRK09490 298 IGEFA 302 (1229)
T ss_pred HHHHH
Confidence 76654
No 257
>PRK00077 eno enolase; Provisional
Probab=59.53 E-value=39 Score=38.36 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccCCcccceeeccCC--CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHh
Q 004623 144 EADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEV 219 (741)
Q Consensus 144 ~A~al~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~ 219 (741)
+-+.+.++++++ +.++||++|=+| ++.-...+++ +++.|.|-|..+|.-. .
T Consensus 290 D~~g~~~L~~~~---~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGit----------------------e 344 (425)
T PRK00077 290 DWEGWKLLTEKL---GDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLT----------------------E 344 (425)
T ss_pred cHHHHHHHHHhc---CCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHH----------------------H
Confidence 445555666542 236999999876 6887777776 4999999999999844 3
Q ss_pred HHHHHHHHHhcCCeEEEeeccCCCc
Q 004623 220 FSPLVEKCKKYGRAVRIGTNHGSLS 244 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIGvN~GSL~ 244 (741)
..+++..|+++|+..= +.|+|.+
T Consensus 345 a~~ia~lA~~~gi~~~--vsh~sgE 367 (425)
T PRK00077 345 TLDAIELAKRAGYTAV--VSHRSGE 367 (425)
T ss_pred HHHHHHHHHHcCCeEE--EeCCCCc
Confidence 5779999999999653 4466653
No 258
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=59.47 E-value=47 Score=36.17 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=42.1
Q ss_pred cccceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE
Q 004623 160 YNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (741)
Q Consensus 160 ~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 235 (741)
+++|+.+|=+ +...-+...++ ++|-|.+.|...|.-. ...++.+.|.++|+++=
T Consensus 221 ~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit----------------------~~~~i~~~A~~~g~~~~ 277 (341)
T cd03327 221 TGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGIT----------------------ELKKIAALAEAYGVPVV 277 (341)
T ss_pred CCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeec
Confidence 7899999955 35555555555 4999999999998744 36789999999999863
No 259
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=59.45 E-value=17 Score=35.85 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC--CcccceeeccCCCHHHHHHHhhhcCceee
Q 004623 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK--NYNIPLVADIHFAPSVALRVAECFDKIRV 187 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~--~~~iPLVADIHF~~~lAl~a~~~vdkiRI 187 (741)
+...+++.++.++|++.|-+..++....+.++.+++ +.+. .+++||+.+ -++++|.++ .++.|=+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~~~~~a~~~--gad~vh~ 87 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARA-LKELCRRYGVPLIVN--DRVDLALAV--GADGVHL 87 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHH-HHHHHHHhCCeEEEe--ChHHHHHHc--CCCEEec
Confidence 457789999999999999999887655444443333 2211 467888864 334444332 2554444
No 260
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=59.42 E-value=2.8e+02 Score=30.70 Aligned_cols=145 Identities=10% Similarity=0.032 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-------------CCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhh
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITV-------------QGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE 180 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvav-------------p~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~ 180 (741)
-..+..++=+..|.++|.++|=++- +...+.+.++.+++... +..+-...+-.+ +.+-...|++
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~~dl~~a~~ 99 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVK--QAKIAALLLPGIGTVDDLKMAYD 99 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCC--CCEEEEEeccCcccHHHHHHHHH
Confidence 4456666667789999999999941 22234556666665432 222222222111 2333445666
Q ss_pred h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHH
Q 004623 181 C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (741)
Q Consensus 181 ~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amV 259 (741)
+ ++.|||- ... + + .+.+.+.++.||++|.-+.+..-.. +..+++.+
T Consensus 100 ~gvd~iri~-----~~~-~-------e----------~~~~~~~i~~ak~~G~~v~~~l~~a---------~~~~~e~l- 146 (337)
T PRK08195 100 AGVRVVRVA-----THC-T-------E----------ADVSEQHIGLARELGMDTVGFLMMS---------HMAPPEKL- 146 (337)
T ss_pred cCCCEEEEE-----Eec-c-------h----------HHHHHHHHHHHHHCCCeEEEEEEec---------cCCCHHHH-
Confidence 6 9999974 111 0 0 1246789999999998876654211 22355444
Q ss_pred HHHHHHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 260 ESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 260 eSAle~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
++.++.+++.|-+. |+++-| .|..+-+-++.+.+.
T Consensus 147 ---~~~a~~~~~~Ga~~--i~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 147 ---AEQAKLMESYGAQC--VYVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred ---HHHHHHHHhCCCCE--EEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 45677788888774 566655 455556666666655
No 261
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=59.03 E-value=69 Score=30.18 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=37.0
Q ss_pred HHHHHHHHHhc-----CCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh
Q 004623 220 FSPLVEKCKKY-----GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (741)
Q Consensus 220 ~~~vv~~ake~-----g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 287 (741)
+.++++.+++. +..+.+.+|.+.++++ .++.+.+.|++.+.||+.+.|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~------------------~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 70 LEELLEAIREILGLADDVEITIETRPGTLTEE------------------LLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred HHHHHHHHHHhCCCCCCeEEEEEeCcccCCHH------------------HHHHHHHcCCCeEEEecccCCHH
Confidence 55667777766 4678888986666553 56667788998999999988755
No 262
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=58.65 E-value=44 Score=36.68 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCEEEEe----cCCH----------------------------------HHHHHHHHHHHhhccCCc
Q 004623 119 GTVEEVMRIADQGADLVRIT----VQGK----------------------------------READACFEIKNSLVQKNY 160 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRva----vp~~----------------------------------~~A~al~~I~~~L~~~~~ 160 (741)
+|+.+-.+-.++|+++||-| +++. -.-+-|+++++. .
T Consensus 122 ~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~-----~ 196 (287)
T TIGR00343 122 RDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKL-----G 196 (287)
T ss_pred CCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHh-----C
Confidence 45677777888999999999 3330 012334555553 5
Q ss_pred cccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 161 NIPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 161 ~iPLV--ADIHF-~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
++|+| |--.. +|.-|-.+++. ++.|=+.-+=+...+ ..-.-..|.+.+.+-.+ -..+.+..+..|-+| .
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~d-----P~~~akafv~ai~~~~~-~~~~~e~s~~~~~~m-~ 269 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSN-----PEKLAKAIVEATTHYDN-PEKLAEVSKDLGEAM-K 269 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCC-----HHHHHHHHHHHHHHcCC-HHHHHHHHccccccC-C
Confidence 69998 88777 78888788887 888876544442211 00012335555555333 567888899999988 4
Q ss_pred eeccCCCcH
Q 004623 237 GTNHGSLSD 245 (741)
Q Consensus 237 GvN~GSL~~ 245 (741)
|.|..+|+.
T Consensus 270 g~~~~~~~~ 278 (287)
T TIGR00343 270 GISISSISE 278 (287)
T ss_pred CCccccCCH
Confidence 999999865
No 263
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=58.46 E-value=23 Score=40.58 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCc
Q 004623 120 TVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDK 184 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvav-p~------------~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdk 184 (741)
|.++.+.|.++|||+|++.. |+ .-.+.++.++.+..++ ..+|+|||-.+. +.-+.+|+.. ++.
T Consensus 279 t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~--~~~~viadGGi~~~~di~kAla~GA~~ 356 (486)
T PRK05567 279 TAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKK--YGIPVIADGGIRYSGDIAKALAAGASA 356 (486)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhcc--CCCeEEEcCCCCCHHHHHHHHHhCCCE
Confidence 46778889999999998831 11 2356677777775443 469999986665 3334455554 666
Q ss_pred eee
Q 004623 185 IRV 187 (741)
Q Consensus 185 iRI 187 (741)
+=+
T Consensus 357 v~~ 359 (486)
T PRK05567 357 VML 359 (486)
T ss_pred EEE
Confidence 544
No 264
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=58.39 E-value=69 Score=35.15 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 146 DACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 146 ~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
+.+.++++ .+++|+.+|=++ +..-+...++ ++|-+.|.|.-+|.-. ...+
T Consensus 228 ~~~~~l~~-----~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~----------------------~~~~ 280 (368)
T TIGR02534 228 EALARLTR-----RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLL----------------------ESKK 280 (368)
T ss_pred HHHHHHHH-----hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH----------------------HHHH
Confidence 34444544 378999999665 3434444444 4899999999998733 3578
Q ss_pred HHHHHHhcCCeEEEe
Q 004623 223 LVEKCKKYGRAVRIG 237 (741)
Q Consensus 223 vv~~ake~g~~IRIG 237 (741)
+...|+.+|+++=+|
T Consensus 281 i~~lA~~~gi~~~~~ 295 (368)
T TIGR02534 281 IAAIAEAAGIALYGG 295 (368)
T ss_pred HHHHHHHcCCceeee
Confidence 999999999997444
No 265
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.22 E-value=1.2e+02 Score=31.49 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig 193 (741)
..|.+.+++.++.|.+.|...+=||..+....+++++++++.. ++-+=|=-=.+..-|..|+++=.+.=+-|+ +
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~----~~~vGAGTVl~~e~a~~ai~aGA~FivSP~-~- 85 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVE----EAIVGAGTILNAKQFEDAAKAGSRFIVSPG-T- 85 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC----CCEEeeEeCcCHHHHHHHHHcCCCEEECCC-C-
Confidence 3478999999999999999999999999999999999998621 133334445678888888887555667885 3
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCC
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~ 273 (741)
+ .+|++.|+++|++.==|+ -||. .+..+.++|
T Consensus 86 ~--------------------------~~vi~~a~~~~i~~iPG~--------------~Tpt--------Ei~~A~~~G 117 (201)
T PRK06015 86 T--------------------------QELLAAANDSDVPLLPGA--------------ATPS--------EVMALREEG 117 (201)
T ss_pred C--------------------------HHHHHHHHHcCCCEeCCC--------------CCHH--------HHHHHHHCC
Confidence 1 459999999999985444 2553 334466789
Q ss_pred CCceEEEE
Q 004623 274 FHNFLFSM 281 (741)
Q Consensus 274 F~diviS~ 281 (741)
++-++|==
T Consensus 118 a~~vK~FP 125 (201)
T PRK06015 118 YTVLKFFP 125 (201)
T ss_pred CCEEEECC
Confidence 98877753
No 266
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=58.20 E-value=1.2e+02 Score=39.28 Aligned_cols=125 Identities=21% Similarity=0.254 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHH-HHHhhccCCcccceeeccC-CC----------HHHHHHHhhh--
Q 004623 117 VAGTVEEVMRIADQGADLVRI-TVQGKREADACFE-IKNSLVQKNYNIPLVADIH-FA----------PSVALRVAEC-- 181 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRv-avp~~~~A~al~~-I~~~L~~~~~~iPLVADIH-F~----------~~lAl~a~~~-- 181 (741)
.+.--+|+..|.++|+|++-+ |.||..+|++.-. +++.+.+++.++|++.=.- |+ ..-+..+++.
T Consensus 147 ~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~~~ 226 (1178)
T TIGR02082 147 VDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEHAG 226 (1178)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhcCC
Confidence 456678999999999999999 7999999886544 5544556678899887621 22 2333344442
Q ss_pred cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhc-CCeEEEeeccCCCcHHHHhhcCCCchHHHH
Q 004623 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (741)
Q Consensus 182 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~-g~~IRIGvN~GSL~~~il~~yg~t~~amVe 260 (741)
++.|=||=+- +.+ .+.++++...++ .+||=+=-|+| |+.. ...|..+|+.|.+
T Consensus 227 ~~avGlNCs~--gP~----------------------~m~~~l~~l~~~~~~pi~vyPNAG-lP~~-~~~yd~~p~~~a~ 280 (1178)
T TIGR02082 227 IDMIGLNCAL--GPD----------------------EMRPHLKHLSEHAEAYVSCHPNAG-LPNA-FGEYDLTPDELAK 280 (1178)
T ss_pred CCEEEeCCCC--CHH----------------------HHHHHHHHHHHhcCceEEEEeCCC-CCCC-CCcccCCHHHHHH
Confidence 5555555331 111 134444444333 35554445998 4433 3567668988888
Q ss_pred HHHHHHH
Q 004623 261 SAFEFAR 267 (741)
Q Consensus 261 SAle~~~ 267 (741)
.+.++++
T Consensus 281 ~~~~~~~ 287 (1178)
T TIGR02082 281 ALADFAA 287 (1178)
T ss_pred HHHHHHH
Confidence 8777654
No 267
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=58.15 E-value=56 Score=35.05 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 144 ~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
..+-|+.+.++|.+.|+.+-|-.| =|+.--..|.+. ++-|=+--|-|++-. +++-++..++.-+++..
T Consensus 109 ~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~IELhTG~Ya~~~---------~~~~~~~~~~el~rl~~ 177 (243)
T COG0854 109 QLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRIELHTGPYADAH---------DAAEQARADAELERLAK 177 (243)
T ss_pred hhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEEEEecccccccC---------ChHHHHHHHHHHHHHHH
Confidence 366788888889999999999999 444444445555 999999999998833 22223333333333444
Q ss_pred HHHHHHhcCCeEEEeeccC
Q 004623 223 LVEKCKKYGRAVRIGTNHG 241 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~G 241 (741)
-.+.|.+.|. .||+|
T Consensus 178 ~a~~A~~lGL----~VnAG 192 (243)
T COG0854 178 AAKLAAELGL----KVNAG 192 (243)
T ss_pred HHHHHHHcCc----eEecC
Confidence 7788888886 45666
No 268
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=58.07 E-value=1.1e+02 Score=35.79 Aligned_cols=151 Identities=20% Similarity=0.225 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhh----hcCceeeCCCCCC
Q 004623 119 GTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE----CFDKIRVNPGNFA 193 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRva-vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~----~vdkiRINPGNig 193 (741)
.-.+-|.-..+.|+|+|=++ |.+.++...++++ |.+.+..+++||=|- -.-|++-++ .+|.|=|-||.+|
T Consensus 175 kD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~---l~~~~~~~~iiakIE--t~~av~nldeI~~~~DgImIargDLg 249 (480)
T cd00288 175 KDKADLRFGVEQGVDMIFASFVRKASDVLEIREV---LGEKGKDIKIIAKIE--NQEGVNNFDEILEASDGIMVARGDLG 249 (480)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH---HHhcCCCceEEEEEC--CHHHHHhHHHHHHhcCEEEECcchhh
Confidence 33444556678899998877 6666655555554 445567899999884 355554443 3999999999998
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCc-hHHHHHHHHHHHH--
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSP-RGMVESAFEFARI-- 268 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~-~amVeSAle~~~i-- 268 (741)
-.- ..+++.+..++++++|+++|+|+=+.+ .+|+..- +.| .| |--++
T Consensus 250 ~e~---------------g~~~v~~~qk~ii~~~~~~gkpvi~AT-------qmLeSM~~~p~PTRA------EvtDVan 301 (480)
T cd00288 250 VEI---------------PAEEVFLAQKMLIAKCNLAGKPVITAT-------QMLESMIYNPRPTRA------EVSDVAN 301 (480)
T ss_pred hhc---------------ChHHHHHHHHHHHHHHHHcCCCEEEEc-------hhHHHHhhCCCCCch------hhHHHHH
Confidence 632 135666677889999999999994444 2344332 122 01 11122
Q ss_pred HHHCCCCceEEEE---ecCChhHHHHHHHHHHHHhhc
Q 004623 269 CRKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYV 302 (741)
Q Consensus 269 ~e~~~F~diviS~---KaSnv~~~i~Ayrlla~~m~~ 302 (741)
+---|.+-+.+|- +-..|..+|+.-+.++++.++
T Consensus 302 av~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~ 338 (480)
T cd00288 302 AVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEK 338 (480)
T ss_pred HHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHh
Confidence 2234889999974 455688888888888888654
No 269
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=57.94 E-value=3e+02 Score=30.51 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-------------cCCHHHHHHHHHHHHhhccCCcc---cceeeccCCCHHHHHHH
Q 004623 115 KDVAGTVEEVMRIADQGADLVRIT-------------VQGKREADACFEIKNSLVQKNYN---IPLVADIHFAPSVALRV 178 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRva-------------vp~~~~A~al~~I~~~L~~~~~~---iPLVADIHF~~~lAl~a 178 (741)
-..+..++=+..|.++|.++|=++ .+-..+.+.+..+.+.+....+. +|-+++++ -...|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~----dl~~a 96 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVH----DLKAA 96 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHH----HHHHH
Confidence 456666777788999999999995 23334455666666654321111 12223332 23455
Q ss_pred hhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchH
Q 004623 179 AEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (741)
Q Consensus 179 ~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~a 257 (741)
.++ ++.|||- ... |+ .+...+.++.+|++|.-+.+.. .. -+.-+|+.
T Consensus 97 ~~~gvd~iri~-----~~~--------~e----------~d~~~~~i~~ak~~G~~v~~~l-----~~----s~~~~~e~ 144 (333)
T TIGR03217 97 YDAGARTVRVA-----THC--------TE----------ADVSEQHIGMARELGMDTVGFL-----MM----SHMTPPEK 144 (333)
T ss_pred HHCCCCEEEEE-----ecc--------ch----------HHHHHHHHHHHHHcCCeEEEEE-----Ec----ccCCCHHH
Confidence 565 9999973 111 00 0136788999999998775543 11 12235544
Q ss_pred HHHHHHHHHHHHHHCCCCceEEEEecC----ChhHHHHHHHHHHHH
Q 004623 258 MVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 299 (741)
Q Consensus 258 mVeSAle~~~i~e~~~F~diviS~KaS----nv~~~i~Ayrlla~~ 299 (741)
-++.++.+++.|-+. |+++-| .|..+-+-++.+.+.
T Consensus 145 ----l~~~a~~~~~~Ga~~--i~i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 145 ----LAEQAKLMESYGADC--VYIVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred ----HHHHHHHHHhcCCCE--EEEccCCCCCCHHHHHHHHHHHHHh
Confidence 455677778888774 566655 455555555555544
No 270
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=57.91 E-value=2.4e+02 Score=30.98 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=64.6
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcC
Q 004623 104 IRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFD 183 (741)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vd 183 (741)
+.+=-|.+++ -.+++=++.|.++||+ .++|.+.+||..|.+ .|++.|++-=-++.+.-+..+++.
T Consensus 27 ~~l~~vvKa~----hg~~~va~~l~~~G~~--~f~va~i~EA~~lr~-------~G~~~~illlg~~~~~~~~~~~~~-- 91 (353)
T cd06815 27 IEVTGVTKVV----CGDPEIAEALLEGGIT--HLADSRIENLKKLKD-------LGISGPKMLLRIPMLSEVEDVVKY-- 91 (353)
T ss_pred CEEEEEEccc----CCCHHHHHHHHHcCCC--EEEeccHHHHHHHHh-------cCCCCCEEEECCCCHHHHHHHHhh--
Confidence 3333445555 2233444567889988 799999999976442 366444332223334333333332
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCe--EEEeeccCCCcHHHHhhcCCCchHHHHH
Q 004623 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA--VRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (741)
Q Consensus 184 kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~--IRIGvN~GSL~~~il~~yg~t~~amVeS 261 (741)
.+-|= +.+ .+.++.+.+.|++.|.+ +=|=||.| |.|+|-+|+ .
T Consensus 92 --~~~~~-i~s----------------------~~~~~~l~~~a~~~~~~~~vhlkvDtG------m~R~G~~~~----e 136 (353)
T cd06815 92 --ADISL-NSE----------------------LETIKALSEEAKKQGKIHKIILMVDLG------DLREGVLPE----D 136 (353)
T ss_pred --cceec-cCh----------------------HHHHHHHHHHHHHcCCccceEEEEecC------CCccccCHH----H
Confidence 11121 211 11244455666666654 45567888 479997663 3
Q ss_pred HHHHHHHHHHC
Q 004623 262 AFEFARICRKL 272 (741)
Q Consensus 262 Ale~~~i~e~~ 272 (741)
+++.++.+.++
T Consensus 137 ~~~~~~~i~~~ 147 (353)
T cd06815 137 LLDFVEEILKL 147 (353)
T ss_pred HHHHHHHHhCC
Confidence 56666666554
No 271
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=57.35 E-value=81 Score=32.07 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=18.7
Q ss_pred HHcCCCEEEEecCCHHHHHHHHHH
Q 004623 128 ADQGADLVRITVQGKREADACFEI 151 (741)
Q Consensus 128 ~~aGceiVRvavp~~~~A~al~~I 151 (741)
.++||+ .++|-+.++|..+.+.
T Consensus 44 ~~~G~~--~f~va~l~Ea~~lr~~ 65 (222)
T cd00635 44 IEAGQR--DFGENRVQEALDKAEE 65 (222)
T ss_pred HHcCCc--ccCCCcHHHHHHHHHH
Confidence 478988 6999999999998864
No 272
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=56.89 E-value=66 Score=35.03 Aligned_cols=68 Identities=15% Similarity=0.296 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---------HHHHHHHHHHHHhhccCCcccceeeccCCC--HHHHHHHhhhcC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG---------KREADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAECFD 183 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~---------~~~A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~vd 183 (741)
.|.+..++++.++.+.|..-+.+-+.. .++.+.+..|++. -|-++.|..|-|-. +.-|+..++.++
T Consensus 119 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~---~g~~~~l~vDan~~~~~~~A~~~~~~l~ 195 (341)
T cd03327 119 TDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREA---VGYDVDLMLDCYMSWNLNYAIKMARALE 195 (341)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHH---hCCCCcEEEECCCCCCHHHHHHHHHHhh
Confidence 377888999999999999999998621 4667778888775 35679999998864 555655555555
Q ss_pred ce
Q 004623 184 KI 185 (741)
Q Consensus 184 ki 185 (741)
.+
T Consensus 196 ~~ 197 (341)
T cd03327 196 KY 197 (341)
T ss_pred hc
Confidence 43
No 273
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=56.38 E-value=1.1e+02 Score=32.36 Aligned_cols=108 Identities=27% Similarity=0.330 Sum_probs=0.0
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~ 177 (741)
+|++.||.+|-+ ..|.+..++|-++|.+.=.+=+=|-+|--.+ .++.|++ |.++|+++-+=+ =|...-|+.
T Consensus 51 i~~~~~vs~ev~----~~~~~~mi~eA~~l~~~~~~nv~VKIP~T~~--Gl~Ai~~-L~~~Gi~vn~T~--ifs~~Qa~~ 121 (222)
T PRK12656 51 IGDEASIHVQVV----AQDYEGILKDAHEIRRQCGDDVYIKVPVTPA--GLAAIKT-LKAEGYHITATA--IYTVFQGLL 121 (222)
T ss_pred hCCCCcEEEEEE----ECCHHHHHHHHHHHHHHhCCCEEEEeCCCHH--HHHHHHH-HHHCCCceEEee--eCCHHHHHH
Q ss_pred Hhhh-cCce-----eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 178 VAEC-FDKI-----RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 178 a~~~-vdki-----RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
|+++ ++-| ||+ |.|..... .++++.+..+.++-.-+|
T Consensus 122 Aa~aGa~yvsPyvgRi~--d~g~D~~~--------------------~i~~i~~~~~~~~~~tkI 164 (222)
T PRK12656 122 AIEAGADYLAPYYNRME--NLNIDSNA--------------------VIGQLAEAIDRENSDSKI 164 (222)
T ss_pred HHHCCCCEEecccchhh--hcCCCHHH--------------------HHHHHHHHHHhcCCCCEE
No 274
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=55.91 E-value=2.5e+02 Score=33.18 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=68.2
Q ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh----cCcee-e
Q 004623 114 TKDVAGTVEEV-MRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC----FDKIR-V 187 (741)
Q Consensus 114 T~Dv~atv~Qi-~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~----vdkiR-I 187 (741)
..|.+..++.+ +++...|+|+| |+ .--.-..|++. .++| |.||+...-=-|.|+.. -.||= |
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dvi-Is-----rG~ta~~i~~~-----~~iP-Vv~i~~s~~Dil~al~~a~~~~~~ia~v 103 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVV-VA-----GGSNGAYLKSR-----LSLP-VIVIKPTGFDVMQALARARRIASSIGVV 103 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEE-EE-----CchHHHHHHHh-----CCCC-EEEecCChhhHHHHHHHHHhcCCcEEEE
Confidence 36788899988 44777799987 33 22233456664 7799 56888764434444432 33332 5
Q ss_pred CCCCCCchhhhcccc--------ccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC
Q 004623 188 NPGNFADRRAQFEQL--------EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (741)
Q Consensus 188 NPGNig~~~k~f~~~--------~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg 252 (741)
.-+|+-..-+.|... .|++ .+.....|+.+|+.|+-+=|| |.+--++-+++|
T Consensus 104 g~~~~~~~~~~~~~ll~~~i~~~~~~~----------~~e~~~~~~~l~~~G~~~viG---~~~~~~~A~~~g 163 (526)
T TIGR02329 104 THQDTPPALRRFQAAFNLDIVQRSYVT----------EEDARSCVNDLRARGIGAVVG---AGLITDLAEQAG 163 (526)
T ss_pred ecCcccHHHHHHHHHhCCceEEEEecC----------HHHHHHHHHHHHHCCCCEEEC---ChHHHHHHHHcC
Confidence 555554433332211 1111 234566788899999877665 446678888888
No 275
>PLN02489 homocysteine S-methyltransferase
Probab=55.86 E-value=78 Score=34.93 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHhhccCCcccceeeccCC
Q 004623 120 TVEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHF 170 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRv-avp~~~~A~al~~I~~~L~~~~~~iPLVADIHF 170 (741)
--.|+..|.++|+|++=+ |+|+.++++++-+..+. .+.++|++.=+.|
T Consensus 169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~---~~~~~p~~iS~t~ 217 (335)
T PLN02489 169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEE---ENIKIPAWISFNS 217 (335)
T ss_pred HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHH---cCCCCeEEEEEEe
Confidence 356788899999999999 89999999987655553 3446787654433
No 276
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=55.78 E-value=19 Score=39.85 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCEEEEec----------------CCHHHHHHHHHHHHhhccCCcccceeec--cCCCHHHHHHHhhh
Q 004623 120 TVEEVMRIADQGADLVRITV----------------QGKREADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC 181 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvav----------------p~~~~A~al~~I~~~L~~~~~~iPLVAD--IHF~~~lAl~a~~~ 181 (741)
|.+..++|.++||+.|+|.. ++. ...++.++++. .++|+||| |.....++ +|+..
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-~l~ai~ev~~a-----~~~pVIadGGIr~~~Di~-KALa~ 219 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-QLAALRWCAKA-----ARKPIIADGGIRTHGDIA-KSIRF 219 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-HHHHHHHHHHh-----cCCeEEEECCcCcHHHHH-HHHHc
Confidence 78889999999999999882 211 35788999885 56999999 55555555 44433
Q ss_pred -cCceee
Q 004623 182 -FDKIRV 187 (741)
Q Consensus 182 -vdkiRI 187 (741)
++.+=+
T Consensus 220 GAd~Vmi 226 (321)
T TIGR01306 220 GASMVMI 226 (321)
T ss_pred CCCEEee
Confidence 555544
No 277
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=55.30 E-value=65 Score=35.42 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEe
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 282 (741)
.++..++.|+. ||-+--=|.++++++.+|-. .-++.+++.++.+.+.||.++.+.+=
T Consensus 110 ~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli 166 (375)
T PRK05628 110 FFAALRAAGFT-RVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARAAGFEHVNLDLI 166 (375)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 45677777864 66666678889999999832 12345667777888999988877763
No 278
>PLN02321 2-isopropylmalate synthase
Probab=55.18 E-value=4.7e+02 Score=31.88 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGN 191 (741)
+..++.-++=++.|.++|-+.+=+..| +.++.++++.|.+.+.. .+.++-..+ ..+.=-|-|+-.
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~---------~v~~~~~v~----~i~a~~ra~~~d 170 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGN---------EVDEDGYVP----VICGLSRCNKKD 170 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhccc---------CCCccccce----eeeeehhccHHh
Confidence 466788888889999999999999876 44788889999875221 111111000 000001112111
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC---CeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g---~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i 268 (741)
++.|.+.. ..-||.+-..+=+-.+..+++-+.+..++.+.+.++.
T Consensus 171 --------------------------------Id~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~ 218 (632)
T PLN02321 171 --------------------------------IDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKY 218 (632)
T ss_pred --------------------------------HHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 12222221 1246777433333445566778899999999999999
Q ss_pred HHHCCCCceEEEEe-c--CChhHHHHHHHHHHH
Q 004623 269 CRKLDFHNFLFSMK-A--SNPVVMVQAYRLLVA 298 (741)
Q Consensus 269 ~e~~~F~diviS~K-a--Snv~~~i~Ayrlla~ 298 (741)
+.++|+..+.||+= + +|+.-+++..+.+.+
T Consensus 219 Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~ 251 (632)
T PLN02321 219 ARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIK 251 (632)
T ss_pred HHHcCCceEEEecccCCCCCHHHHHHHHHHHHH
Confidence 99999988999984 2 345555555555443
No 279
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=55.02 E-value=52 Score=37.36 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhccCCcccceeeccCC--CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHH
Q 004623 143 READACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 218 (741)
Q Consensus 143 ~~A~al~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e 218 (741)
++.+.+.++++++ +..+||++|=.| ++.-+..+++ +++-+.|-|..+|.-.
T Consensus 290 ~D~~~~~~L~~~~---~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIt---------------------- 344 (425)
T TIGR01060 290 EDWEGWAELTKEL---GDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLT---------------------- 344 (425)
T ss_pred ccHHHHHHHHHhc---CCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHH----------------------
Confidence 4567777777751 227999999865 6888888877 4999999999999844
Q ss_pred hHHHHHHHHHhcCCeEEEeeccCCC
Q 004623 219 VFSPLVEKCKKYGRAVRIGTNHGSL 243 (741)
Q Consensus 219 ~~~~vv~~ake~g~~IRIGvN~GSL 243 (741)
...++++.|+++|+++= +.|.|.
T Consensus 345 ea~~ia~lA~~~Gi~~v--v~h~sg 367 (425)
T TIGR01060 345 ETLDAVELAKKAGYTAV--ISHRSG 367 (425)
T ss_pred HHHHHHHHHHHcCCcEE--EecCCc
Confidence 35778999999999742 446654
No 280
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=54.82 E-value=41 Score=36.05 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 144 ~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
..+.|+.+.++|.+.|+.+-|--|= ++.-...|.+. +|.|=+.-|.|++.. ++++-.+|+++|.+
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A~~~GAd~VELhTG~YA~a~--------~~~~~~~el~~i~~---- 173 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSLFIDA--DKDQISAAAEVGADRIEIHTGPYANAY--------NKKEMAEELQRIVK---- 173 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcCC--------CchhHHHHHHHHHH----
Confidence 4566778888888888888887552 34444455565 999999999998722 22333455666555
Q ss_pred HHHHHHhcCCeEEEeeccCC
Q 004623 223 LVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GS 242 (741)
-.+.|++.| ++||+|-
T Consensus 174 aa~~A~~lG----L~VnAGH 189 (237)
T TIGR00559 174 ASVHAHSLG----LKVNAGH 189 (237)
T ss_pred HHHHHHHcC----CEEecCC
Confidence 677788877 4788873
No 281
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=54.61 E-value=1.5e+02 Score=34.55 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=86.4
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-----cCCHHHHHHHHHHHHhhccCCcccceeeccCCCH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAP 172 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva-----vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~ 172 (741)
.|+ |-...=|||+++-.+++.-++..++|++.|||-+=+- ..-.++-+-++.||+. +++|+----|-.-
T Consensus 137 ~G~-h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~-----~~~pv~lHtH~Ts 210 (472)
T COG5016 137 HGA-HVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKE-----LPVPVELHTHATS 210 (472)
T ss_pred cCc-eeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHh-----cCCeeEEeccccc
Confidence 454 7778889999999999999999999999999988664 1123566778888886 7899988888775
Q ss_pred HHHH----HHhhh-cCcee--eCCCCCCchhhhccccccc-------hHHHHHHHHhHHHhHHHHHHHH
Q 004623 173 SVAL----RVAEC-FDKIR--VNPGNFADRRAQFEQLEYT-------DDEYQKELQHIEEVFSPLVEKC 227 (741)
Q Consensus 173 ~lAl----~a~~~-vdkiR--INPGNig~~~k~f~~~~Yt-------deey~~ele~I~e~~~~vv~~a 227 (741)
-+|. +|+|+ +|-|= |-|=..|...-..+..+|. .-==.++++.|.+-|+++-++=
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 5554 67777 88775 7776666544334443332 1112345566666666554444
No 282
>PRK14016 cyanophycin synthetase; Provisional
Probab=54.43 E-value=1.3e+02 Score=36.62 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCeEEEeeccCCC---------------------------------cHHHHhhcC-CCchHH-HHHHHHHH
Q 004623 222 PLVEKCKKYGRAVRIGTNHGSL---------------------------------SDRIMSYYG-DSPRGM-VESAFEFA 266 (741)
Q Consensus 222 ~vv~~ake~g~~IRIGvN~GSL---------------------------------~~~il~~yg-~t~~am-VeSAle~~ 266 (741)
.++++|+++|+|.+. ++.||| .+.+|+++| ++|++. +.+.-+..
T Consensus 164 ~I~~~A~~~gi~~~~-l~~~~~v~lgyG~~~~~i~~~~~~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~ 242 (727)
T PRK14016 164 AIVDAAEARGIPYIR-LGDGSLVQLGYGKYQRRIQAAETDQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAEDAW 242 (727)
T ss_pred HHHHHHHHcCCCEEE-eCCCCeEecCCcHHHHHHHHhcCCCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHHHHH
Confidence 589999999998844 444443 235677788 666544 55555566
Q ss_pred HHHHHCCCCceE----------EEEecCChhHHHHHHHHHHH
Q 004623 267 RICRKLDFHNFL----------FSMKASNPVVMVQAYRLLVA 298 (741)
Q Consensus 267 ~i~e~~~F~div----------iS~KaSnv~~~i~Ayrlla~ 298 (741)
+.++++||-=|+ ++++..|..+..++|+.+.+
T Consensus 243 ~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~ 284 (727)
T PRK14016 243 EAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK 284 (727)
T ss_pred HHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH
Confidence 677888884222 33345666677777766543
No 283
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=54.17 E-value=2.8e+02 Score=28.98 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=69.2
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhh
Q 004623 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (741)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~-A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~ 180 (741)
-|+-|.=|++. - -..|..++++||+++=+-+-.... .+.|..||+ .|+..=|.=.=+-.......-++
T Consensus 59 ~~~dvHLMv~~----p---~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~----~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 59 APIDVHLMVKP----V---DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKE----HGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred CCEEEEeccCC----H---HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHH----cCCcEEEEeCCCCCHHHHHHHHH
Confidence 57778888763 2 345678889999998877653322 355556665 47765444444443344444444
Q ss_pred hcCcee---eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHH
Q 004623 181 CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (741)
Q Consensus 181 ~vdkiR---INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 246 (741)
.+|.|= +|||-=|- +|-.. .+++ ++++.+..+++|.-+.|-| -|.++.+
T Consensus 128 ~~D~vlvMtV~PGfgGq---~fi~~---------~lek----I~~l~~~~~~~~~~~~I~v-dGGI~~e 179 (220)
T PRK08883 128 KVDLILLMSVNPGFGGQ---SFIPH---------TLDK----LRAVRKMIDESGRDIRLEI-DGGVKVD 179 (220)
T ss_pred hCCeEEEEEecCCCCCc---eecHh---------HHHH----HHHHHHHHHhcCCCeeEEE-ECCCCHH
Confidence 566554 79986543 23322 2333 4445566667777788888 6667654
No 284
>COG0294 FolP Dihydropteroate synthase and related enzymes [Coenzyme metabolism]
Probab=54.07 E-value=3.2e+02 Score=29.62 Aligned_cols=205 Identities=13% Similarity=0.140 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh---
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC--- 181 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~----------~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~--- 181 (741)
.++++.+.+..++...|+++|-+-..+ .++..-+.-|-+.+++..+.+++--|.-. +..|.+|+++
T Consensus 28 ~~~~~a~~~a~~~~~~Ga~iIdiGgeStrpg~~~vs~~~E~~Rv~Pvl~~i~~~~~~v~isvdt~r-~~va~~a~~aG~~ 106 (274)
T COG0294 28 LSLDDALKHADKMIAEGADIIDIGGESTRPGAEFVSVEEELERVDPVLEAVRSPESDVAISVDTSR-AEVAPLALGAGAD 106 (274)
T ss_pred ccHHHHHHHHHHHHhCCCcEEEeCCccCCCCCCccChHHHHHHHHHHHHHhhccCCceeEeccccc-hHHHHHHHHcccc
Confidence 346899999999999999999986433 23333344444445554466776666433 4445555543
Q ss_pred ----cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchH
Q 004623 182 ----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (741)
Q Consensus 182 ----vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~a 257 (741)
++..++||+. +-..|.|+|++|=+=.|.|--.. ++.+ +--++
T Consensus 107 ~inDv~g~~~~p~~-------------------------------la~va~e~~~~i~lmh~~~~~~~--~~~~-d~~~~ 152 (274)
T COG0294 107 EINDVDGGGIDPAL-------------------------------LAAVAAELGAPILLMHEQGVPET--MSIN-DLVAA 152 (274)
T ss_pred eeeecccCCCCHHH-------------------------------HHHHHHHcCCCEEEEcCCCCCCC--CCcc-hHHHH
Confidence 4444444433 34567799999966555443321 1100 11233
Q ss_pred HHHHHHHHHHHHHHCCC--CceEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccc---------ccccCCCCCCchhh
Q 004623 258 MVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLG---------VTEAGEGEDGRMKS 326 (741)
Q Consensus 258 mVeSAle~~~i~e~~~F--~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLG---------VTEAG~~~~G~IKS 326 (741)
+-..-.+.++.|...|. ++|++--.---.....+-+.++++-.+.....||+=+| ++. ...+.|+..
T Consensus 153 ~~~~l~~~~~~~~~~gv~~~~iilDpg~gf~k~~~~n~~ll~~~~~~~~~g~piLvg~srK~~ig~~~~--~~~~~r~~g 230 (274)
T COG0294 153 VDMFLLARIEEALAAGVGRELIILDPGFGFGKTPEHNLELLARLSEFLELGFPILVGHSRKSFIGAILG--RDPAERLEG 230 (274)
T ss_pred HHHHHHHHHHHHhhcCCChhhEEecCCcCCCcccchhHHHHHhHHHhhcCCCcEEEecCCceehhhhcC--CChhhhhhh
Confidence 33334445556666665 35554433221222233444444432223468999988 333 567889999
Q ss_pred HHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHh
Q 004623 327 AIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANL 363 (741)
Q Consensus 327 aiGIG~LL~~GIGDTIRVSLT~dP~~EV~v~~~il~~ 363 (741)
+.+...+...-=-+-+| ++.|..++++++.
T Consensus 231 t~a~~~~~~~~g~~ivr-------vHdv~~~~e~~k~ 260 (274)
T COG0294 231 TLATELLAAALGADIVR-------VHDVYEGRELLKA 260 (274)
T ss_pred hHHHHHHHHHcCCCEEE-------EcchHhhHHHHHH
Confidence 99988887665445555 7889999999884
No 285
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=54.06 E-value=65 Score=36.05 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhccCCcccceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHH
Q 004623 145 ADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (741)
Q Consensus 145 A~al~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~ 221 (741)
.+.+.++++. +++||.+|=+ |+++-+..+++ ++|-|++.|+.+|.-. ...
T Consensus 246 ~~~~~~L~~~-----~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit----------------------~~~ 298 (404)
T PRK15072 246 QEAFRLIRQH-----TTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGIT----------------------HLR 298 (404)
T ss_pred HHHHHHHHhc-----CCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHH----------------------HHH
Confidence 3455555553 7899999976 45555556655 3999999999998744 367
Q ss_pred HHHHHHHhcCCeEEEe
Q 004623 222 PLVEKCKKYGRAVRIG 237 (741)
Q Consensus 222 ~vv~~ake~g~~IRIG 237 (741)
++.+.|..+|+++=++
T Consensus 299 kia~lA~~~gi~~~~h 314 (404)
T PRK15072 299 RIADFAALYQVRTGSH 314 (404)
T ss_pred HHHHHHHHcCCceeec
Confidence 8999999999998654
No 286
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=54.00 E-value=1.2e+02 Score=30.61 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHHhhccCCcccceeec-cCCCHHHHHHHhhh-cCceeeCCC
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKR---EADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAEC-FDKIRVNPG 190 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~---~A~al~~I~~~L~~~~~~iPLVAD-IHF~~~lAl~a~~~-vdkiRINPG 190 (741)
+...-++..++.+++||+-+|+.+-+.. .-+.+..|++. +++|++.- .=.++..+..+.++ +|.|=+.==
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-----v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-----VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-----cCCCEEECCeecCHHHHHHHHHcCCCEEEEeec
Confidence 3345678888999999999999754332 34566777774 57998853 22344456667776 887765222
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
.+.. +.++++++.++..|+-.-+.+
T Consensus 104 ~~~~-----------------------~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 104 ALDD-----------------------EQLKELYELARELGMEVLVEV 128 (217)
T ss_pred cCCH-----------------------HHHHHHHHHHHHcCCeEEEEE
Confidence 2211 236778888999988887776
No 287
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.87 E-value=4.6 Score=32.97 Aligned_cols=24 Identities=33% Similarity=0.769 Sum_probs=13.1
Q ss_pred cCCCCccccccH---HHHHHHHHHHhcC
Q 004623 644 SCPSCGRTLFDL---QEISAEIREKTSH 668 (741)
Q Consensus 644 SCPsCGRTlfDL---q~~~~~Ik~~t~h 668 (741)
.||-|||. ||= ++++++.+..+..
T Consensus 22 ~CPlC~r~-l~~e~~~~li~~~~~~i~~ 48 (54)
T PF04423_consen 22 CCPLCGRP-LDEEHRQELIKKYKSEIEE 48 (54)
T ss_dssp E-TTT--E-E-HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 99999998 653 5566666655543
No 288
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=53.82 E-value=67 Score=33.39 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhhccCCcccceeeccCCC--HHHHHHHhhhcCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAECFDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~--~~~A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~vdk 184 (741)
.|.+..++++.++.+.|..-+.+-+.. .++.+.+..|++.+ |-+++|..|.|-. ..-|++.++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~---g~~~~l~vDan~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAV---GDDAELRVDANRGWTPKQAIRALRALED 154 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhc---CCCCEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 367889999999999999999988742 46778888888753 4468999998864 4555555555544
No 289
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=53.73 E-value=17 Score=37.36 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHh
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~-~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~ 179 (741)
+-|+-|.=|...+ ...|..+.++||++|=+-+-+.+ -.+.+..||+ .|+..=|. ++|.-.++.+
T Consensus 57 ~~~~DvHLMv~~P-------~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~----~g~k~Gia----lnP~T~~~~~ 121 (201)
T PF00834_consen 57 DLPLDVHLMVENP-------ERYIEEFAEAGADYITFHAEATEDPKETIKYIKE----AGIKAGIA----LNPETPVEEL 121 (201)
T ss_dssp SSEEEEEEESSSG-------GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHH----TTSEEEEE----E-TTS-GGGG
T ss_pred CCcEEEEeeeccH-------HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHH----hCCCEEEE----EECCCCchHH
Confidence 4577888888754 25677889999997766544332 2345555555 47765443 4555555555
Q ss_pred hh----cCcee---eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcH
Q 004623 180 EC----FDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (741)
Q Consensus 180 ~~----vdkiR---INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 245 (741)
+. +|.|= +|||.=|- +|... .-+|++++-+..+++|..+.|.|. |+++.
T Consensus 122 ~~~l~~vD~VlvMsV~PG~~Gq---~f~~~-------------~~~KI~~l~~~~~~~~~~~~I~vD-GGI~~ 177 (201)
T PF00834_consen 122 EPYLDQVDMVLVMSVEPGFGGQ---KFIPE-------------VLEKIRELRKLIPENGLDFEIEVD-GGINE 177 (201)
T ss_dssp TTTGCCSSEEEEESS-TTTSSB-----HGG-------------HHHHHHHHHHHHHHHTCGSEEEEE-SSEST
T ss_pred HHHhhhcCEEEEEEecCCCCcc---cccHH-------------HHHHHHHHHHHHHhcCCceEEEEE-CCCCH
Confidence 52 45443 69995543 24433 245666688888999999999994 44544
No 290
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.65 E-value=48 Score=37.27 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHhhccCCcccceee-ccCCCHHHHHHHhhh-cCceee
Q 004623 119 GTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIHFAPSVALRVAEC-FDKIRV 187 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp~~~--------~A~al~~I~~~L~~~~~~iPLVA-DIHF~~~lAl~a~~~-vdkiRI 187 (741)
.+.+.+..|.++|+++|=+.-.+.+ ....+.+++++ .++|+|+ | -++++.|..+++. +|.|.+
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-----~~ipVIaG~-V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-----LDVPVIVGG-CVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-----CCCCEEEeC-CCCHHHHHHHHHcCCCEEEE
Confidence 4567788889999999988543211 23345555553 5799998 7 6889999999997 999986
No 291
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.57 E-value=40 Score=38.77 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=54.0
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCC-HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHH----HH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQG-KREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRva----vp~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl----~a 178 (741)
|+|..+-.+.+.-++-++++.++||+.|+++ .-+ .+.++-++.||+. +++||-.-.|-+.-+|+ +|
T Consensus 144 ~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~-----~~~pi~~H~Hnt~GlA~AN~laA 218 (448)
T PRK12331 144 SYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEA-----VTVPLEVHTHATSGIAEMTYLKA 218 (448)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCCcHHHHHHHH
Confidence 4444455788999999999999999988887 111 2455666667765 56898777777777766 56
Q ss_pred hhh-cCcee--eCC
Q 004623 179 AEC-FDKIR--VNP 189 (741)
Q Consensus 179 ~~~-vdkiR--INP 189 (741)
+++ ++-|= |||
T Consensus 219 ieaGad~vD~sv~g 232 (448)
T PRK12331 219 IEAGADIIDTAISP 232 (448)
T ss_pred HHcCCCEEEeeccc
Confidence 675 66554 454
No 292
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=53.23 E-value=41 Score=40.18 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=52.5
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHH----HH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRva----vp~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl----~a 178 (741)
|.|..+..+++.-++.++++.++||+.|.+. .-.+ +..+-++.||+. +++|+-.-.|-+.-+|+ +|
T Consensus 144 ~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-----~~ipi~~H~Hnt~Gla~an~laA 218 (596)
T PRK14042 144 CYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-----TGLPVHLHSHSTSGLASICHYEA 218 (596)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-----cCCEEEEEeCCCCCcHHHHHHHH
Confidence 4556778999999999999999999987776 1122 344555666664 67898777777776765 56
Q ss_pred hhh-cCcee
Q 004623 179 AEC-FDKIR 186 (741)
Q Consensus 179 ~~~-vdkiR 186 (741)
+++ ++-|=
T Consensus 219 ieaGad~iD 227 (596)
T PRK14042 219 VLAGCNHID 227 (596)
T ss_pred HHhCCCEEE
Confidence 665 66554
No 293
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=52.98 E-value=46 Score=37.81 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=47.0
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHH
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMV 290 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i 290 (741)
-++..++.|+- ||..+-=|++++++++-|- .....+..|++ .+.+.||.+|.+-+=--=|..+.
T Consensus 139 ~~~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~---~~~~~g~~~in~DLIyglP~QT~ 203 (416)
T COG0635 139 KFKALKEAGVN-RISLGVQSFNDEVLKALGRIHDEEEAKEAVE---LARKAGFTSINIDLIYGLPGQTL 203 (416)
T ss_pred HHHHHHHcCCC-EEEeccccCCHHHHHHhcCCCCHHHHHHHHH---HHHHcCCCcEEEEeecCCCCCCH
Confidence 35788999999 9999999999999999984 44455555554 45569999988876443333333
No 294
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=52.88 E-value=54 Score=33.21 Aligned_cols=70 Identities=6% Similarity=0.085 Sum_probs=46.2
Q ss_pred CceEEEec--cCCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHH
Q 004623 102 HPIRVQTM--TTNDT--KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (741)
Q Consensus 102 ~PI~VQSM--t~t~T--~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lA 175 (741)
.|+++-.. +.|.. ..+.+-.+...++.+.||+++-|++.+..+.++..+-.+.+ .+++.||++|- +..++
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~--~~l~fpllsD~--~~~ia 105 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETI--AKIKYAMIGDP--TGALT 105 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccc--cCCceeEEEcC--chHHH
Confidence 36666655 33433 33334455556677889999999999888877765543322 36789999994 55555
No 295
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=52.87 E-value=1.4e+02 Score=29.62 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=76.0
Q ss_pred HHHHHHhhccCCcccceeeccCCCHHHHHHHhh----h-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 148 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE----C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 148 l~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~----~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
..-+++.+++.|+.+=++.|-.+++..-.+.++ . +|.|=++|-+-.. +.+
T Consensus 17 ~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~-------------------------~~~ 71 (257)
T PF13407_consen 17 IKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS-------------------------LAP 71 (257)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT-------------------------THH
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH-------------------------HHH
Confidence 344455555566766666788888766555444 2 8888888877633 456
Q ss_pred HHHHHHhcCCeEEEeeccC-CCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHh
Q 004623 223 LVEKCKKYGRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~G-SL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m 300 (741)
+++.|++.|+|+ |-+|.+ ..+.......|..+..+-..+.+++.-.-..+ .+|++-.=.-+...+.+-++-+.+.|
T Consensus 72 ~l~~~~~~gIpv-v~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~-~~v~~~~~~~~~~~~~~r~~g~~~~l 148 (257)
T PF13407_consen 72 FLEKAKAAGIPV-VTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK-GKVLILSGSPGNPNTQERLEGFRDAL 148 (257)
T ss_dssp HHHHHHHTTSEE-EEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT-EEEEEEESSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCceE-EEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC-ceEEeccCCCCchHHHHHHHHHHHHH
Confidence 899999999999 667777 44444444555455666665555554333333 56665533333344444555555554
No 296
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=52.57 E-value=15 Score=33.73 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.9
Q ss_pred ceeecCCCCccccccHHHHHHHHHHHhcCC-CCcEEEEeeeeecCCCCC
Q 004623 640 TEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEM 687 (741)
Q Consensus 640 te~ISCPsCGRTlfDLq~~~~~Ik~~t~hL-kgvkIAVMGCIVNGPGEm 687 (741)
.+.|--=||+=+.---++...+|++....- |+.+|.|+||.+.--+|.
T Consensus 37 AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~ 85 (98)
T PF00919_consen 37 ADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEE 85 (98)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccChHH
Confidence 456666699988655666777777766555 789999999999987743
No 297
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=52.56 E-value=1.1e+02 Score=31.89 Aligned_cols=126 Identities=21% Similarity=0.332 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCEEEEecCC------HHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCCCC
Q 004623 121 VEEVMRIADQGADLVRITVQG------KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNF 192 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~------~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPGNi 192 (741)
++-.+.+.++|++-+=++=-+ ....+.+++|++. +++|++++-... ..-+.++++. ++++=|+=+.+
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-----~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-----VFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-----CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 445566779999866555222 2334466666664 679999987765 5566666665 88888876666
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC-CeEEEeec--c----CCCcHHHHhhcCCCchHHHHHHHHH
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGTN--H----GSLSDRIMSYYGDSPRGMVESAFEF 265 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g-~~IRIGvN--~----GSL~~~il~~yg~t~~amVeSAle~ 265 (741)
.+.+ .|.++ ++.+| -.|...++ . |.. .+.-+-+..+... +.+++
T Consensus 108 ~~p~----------------------~~~ei---~~~~g~~~iv~slD~~~~~~~~~~--~v~~~~~~~~~~~--~~~~~ 158 (253)
T PRK02083 108 ANPE----------------------LISEA---ADRFGSQCIVVAIDAKRDPEPGRW--EVYTHGGRKPTGL--DAVEW 158 (253)
T ss_pred hCcH----------------------HHHHH---HHHcCCCCEEEEEEeccCCCCCCE--EEEEcCCceecCC--CHHHH
Confidence 5432 13333 33333 22333332 2 211 1111211122122 56788
Q ss_pred HHHHHHCCCCceEEE
Q 004623 266 ARICRKLDFHNFLFS 280 (741)
Q Consensus 266 ~~i~e~~~F~diviS 280 (741)
++.+++.|++.+++.
T Consensus 159 ~~~~~~~g~~~ii~~ 173 (253)
T PRK02083 159 AKEVEELGAGEILLT 173 (253)
T ss_pred HHHHHHcCCCEEEEc
Confidence 899999999998774
No 298
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=52.44 E-value=75 Score=34.86 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccCCcccceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhH
Q 004623 144 EADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (741)
Q Consensus 144 ~A~al~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~ 220 (741)
+.+.+.+++++ ..+++|+.+|=+ |+..-+...++ ++|-+.+.+...|.-. ..
T Consensus 221 d~~~~~~l~~~---~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit----------------------~~ 275 (352)
T cd03328 221 DLAGLRLVRER---GPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVT----------------------GF 275 (352)
T ss_pred hHHHHHHHHhh---CCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HH
Confidence 34445555552 015699999965 46666666666 5999999999998733 36
Q ss_pred HHHHHHHHhcCCeEEEe
Q 004623 221 SPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 221 ~~vv~~ake~g~~IRIG 237 (741)
.++.+.|+.+|+++=++
T Consensus 276 ~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 276 LQAAALAAAHHVDLSAH 292 (352)
T ss_pred HHHHHHHHHcCCeeccC
Confidence 78999999999998654
No 299
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=52.07 E-value=90 Score=34.15 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=24.9
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT 138 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva 138 (741)
+.|+.||=+.+ |.+.-++...++.++|+|.|=+-
T Consensus 62 e~p~~vQl~g~----~p~~~~~aA~~~~~~g~d~IdiN 95 (312)
T PRK10550 62 GTLVRIQLLGQ----YPQWLAENAARAVELGSWGVDLN 95 (312)
T ss_pred CCcEEEEeccC----CHHHHHHHHHHHHHcCCCEEEEe
Confidence 57999998865 44556666667788899887554
No 300
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=51.87 E-value=1e+02 Score=33.83 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCCC-EEEEecCCH-HHHHHHHHHHHhhccCCcccceeec--cCCC---HH---------HHH---
Q 004623 116 DVAGTVEEVMRIADQGAD-LVRITVQGK-READACFEIKNSLVQKNYNIPLVAD--IHFA---PS---------VAL--- 176 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGce-iVRvavp~~-~~A~al~~I~~~L~~~~~~iPLVAD--IHF~---~~---------lAl--- 176 (741)
|+++++++++++.++|+. ||=.|.++. ++++.|++|-++ +.|.+||- +|+. |. +|-
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~-----tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i 110 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRR-----TGVNIIASTGFYKEPFYPEWVREASVEELADLFI 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHH-----HT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHH-----hCCeEEEeCCCCccccCChhhhcCCHHHHHHHHH
Confidence 999999999999999985 777777776 889999999997 88999986 2321 21 111
Q ss_pred HHhh-hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCc
Q 004623 177 RVAE-CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (741)
Q Consensus 177 ~a~~-~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~ 255 (741)
.-++ .+|.--|-||-|+-.-. +. ..|+.| ++-|+....+.++-|.||=+=+..|.
T Consensus 111 ~Ei~~GidgT~ikaG~Ik~~~~-~~--~it~~E--------~k~lrAaa~A~~~TG~pI~~H~~~g~------------- 166 (308)
T PF02126_consen 111 REIEEGIDGTGIKAGIIKEIGS-SN--PITPLE--------EKVLRAAARAHKETGAPISTHTGRGT------------- 166 (308)
T ss_dssp HHHHT-STTSSB-ESEEEEEEB-TT--BCEHHH--------HHHHHHHHHHHHHHT-EEEEEESTTG-------------
T ss_pred HHHHhcCCCCccchhheeEeec-cC--CCCHHH--------HHHHHHHHHHHHHhCCeEEEcCCCCC-------------
Confidence 1222 37776678998854221 11 111111 34578899999999999966554332
Q ss_pred hHHHHHHHHHHHHHHHCCC--CceEEEEecCChhHHHHHHHHHHHH
Q 004623 256 RGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 256 ~amVeSAle~~~i~e~~~F--~diviS~KaSnv~~~i~Ayrlla~~ 299 (741)
..++|.+++|++.|. ++++|+= .|...=...++.|+++
T Consensus 167 ----~~~~e~~~il~e~Gv~~~rvvigH--~D~~~D~~y~~~la~~ 206 (308)
T PF02126_consen 167 ----RMGLEQLDILEEEGVDPSRVVIGH--MDRNPDLDYHRELADR 206 (308)
T ss_dssp ----TCHHHHHHHHHHTT--GGGEEETS--GGGST-HHHHHHHHHT
T ss_pred ----cCHHHHHHHHHHcCCChhHeEEeC--CCCCCCHHHHHHHHhc
Confidence 126788999999998 6777752 3333335566777765
No 301
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=51.50 E-value=51 Score=37.13 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec--------CCHHHHHHHHHHHHhhccCCcccceee-ccCCCHHHHHHHhhh-cCceeeC
Q 004623 119 GTVEEVMRIADQGADLVRITV--------QGKREADACFEIKNSLVQKNYNIPLVA-DIHFAPSVALRVAEC-FDKIRVN 188 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvav--------p~~~~A~al~~I~~~L~~~~~~iPLVA-DIHF~~~lAl~a~~~-vdkiRIN 188 (741)
.+.+..+.++++|+++|=+.- -+..+-..+.++++. .++|+|+ | .++++.|+.+++. +|.|-|-
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-----~~IPVI~G~-V~t~e~A~~~~~aGaDgV~~G 216 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-----LDVPVIAGG-VNDYTTALHLMRTGAAGVIVG 216 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH-----CCCCEEEeC-CCCHHHHHHHHHcCCCEEEEC
Confidence 566778889999999987641 111234456666664 5799998 7 6899999999996 9998755
Q ss_pred CCC
Q 004623 189 PGN 191 (741)
Q Consensus 189 PGN 191 (741)
+|-
T Consensus 217 ~gg 219 (369)
T TIGR01304 217 PGG 219 (369)
T ss_pred CCC
Confidence 543
No 302
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=51.46 E-value=2.1e+02 Score=30.73 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=59.9
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-----HHHHHHHHHHhhccCCcccceeeccCCCHHHHH
Q 004623 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-----EADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (741)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~-----~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl 176 (741)
+|+.+|=.... |.+.+.+.++++.+.|++.+=+.+.-.. ..+.+++|++. +++|++.=.-..+..|.
T Consensus 116 ~~~~~ql~~~~---~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~-----~~~pvivK~v~s~~~a~ 187 (299)
T cd02809 116 GPRWFQLYVPR---DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQ-----WKGPLILKGILTPEDAL 187 (299)
T ss_pred CCeEEEEeecC---CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHh-----cCCCEEEeecCCHHHHH
Confidence 68888865433 5677778888888999998877654332 13578888885 77998876557889999
Q ss_pred HHhhh-cCceeeC
Q 004623 177 RVAEC-FDKIRVN 188 (741)
Q Consensus 177 ~a~~~-vdkiRIN 188 (741)
.|.++ +|.|-+.
T Consensus 188 ~a~~~G~d~I~v~ 200 (299)
T cd02809 188 RAVDAGADGIVVS 200 (299)
T ss_pred HHHHCCCCEEEEc
Confidence 99997 9999875
No 303
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=51.35 E-value=1.3e+02 Score=31.22 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig 193 (741)
..|.+..++.++.|.+.|..++=||..+..+.++++.++++.- ++=+=|=-=.+..-|..|+++=.+.=+-|+ +
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p----~~~vGAGTV~~~e~a~~a~~aGA~FivSP~-~- 89 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFP----DLLVGAGTVLTAEQAEAAIAAGAQFIVSPG-F- 89 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHT----TSEEEEES--SHHHHHHHHHHT-SEEEESS---
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCC----CCeeEEEeccCHHHHHHHHHcCCCEEECCC-C-
Confidence 4567888999999999999999999999999999999998721 122333444678888888887555667885 3
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
+ .+|++.|+++|+|.==|+
T Consensus 90 ~--------------------------~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 90 D--------------------------PEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp ---------------------------HHHHHHHHHHTSEEEEEE
T ss_pred C--------------------------HHHHHHHHHcCCcccCCc
Confidence 1 459999999999997777
No 304
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=51.27 E-value=21 Score=35.98 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=47.6
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------------CHHHHHHHHHHHHhhccCCcccceeec
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-------------GKREADACFEIKNSLVQKNYNIPLVAD 167 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp-------------~~~~A~al~~I~~~L~~~~~~iPLVAD 167 (741)
|.||..+-|.+.-..+. .+-+.+..+++.|+..||+-+. +...-+.|.++.+...+.|+.+ |-|
T Consensus 5 G~~v~~~G~n~~w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild 81 (281)
T PF00150_consen 5 GKPVNWRGFNTHWYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILD 81 (281)
T ss_dssp SEBEEEEEEEETTSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEE
T ss_pred CCeEEeeeeecccCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEE
Confidence 56777777766533222 5556677888999999999865 2345577777777777777765 679
Q ss_pred cCCC
Q 004623 168 IHFA 171 (741)
Q Consensus 168 IHF~ 171 (741)
+|=.
T Consensus 82 ~h~~ 85 (281)
T PF00150_consen 82 LHNA 85 (281)
T ss_dssp EEES
T ss_pred eccC
Confidence 9987
No 305
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=51.16 E-value=80 Score=31.08 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcccceeeccCCC-H--HHHHHHhhh-cCcee
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFA-P--SVALRVAEC-FDKIR 186 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~--A~al~~I~~~L~~~~~~iPLVADIHF~-~--~lAl~a~~~-vdkiR 186 (741)
|..|.+.+.+-++.|.+. .+.+.+..|-... -+.++.|++. ..++|+++|.=+. + ..+..++++ ++-|=
T Consensus 8 d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~ 82 (202)
T cd04726 8 DLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAGALEAEMAFKAGADIVT 82 (202)
T ss_pred cCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence 777889999999999999 9999996554321 3445555543 3478998883322 2 235556665 66555
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 187 INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
+..-.- . +...++++.||++|+. +|+
T Consensus 83 ~h~~~~-~-----------------------~~~~~~i~~~~~~g~~--~~v 108 (202)
T cd04726 83 VLGAAP-L-----------------------STIKKAVKAAKKYGKE--VQV 108 (202)
T ss_pred EEeeCC-H-----------------------HHHHHHHHHHHHcCCe--EEE
Confidence 432210 0 1246689999999864 475
No 306
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=51.13 E-value=76 Score=34.45 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=76.1
Q ss_pred HHHHHHHHHH-HHcCCCEEEEec--------------CC-HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh
Q 004623 118 AGTVEEVMRI-ADQGADLVRITV--------------QG-KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (741)
Q Consensus 118 ~atv~Qi~~L-~~aGceiVRvav--------------p~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 181 (741)
-.+.+++++. +..|...++=+. ++ .+--+-|.+++++ +.+|+|.|+|-...+. .+++.
T Consensus 19 ~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~-----~glpvvTeV~~~~~~~-~vae~ 92 (258)
T TIGR01362 19 LRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEE-----FGVPILTDVHESSQCE-PVAEV 92 (258)
T ss_pred HHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----hCCceEEEeCCHHHHH-HHHhh
Confidence 3344444443 335666666522 24 4678889999997 8999999999765554 66788
Q ss_pred cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCchHHH
Q 004623 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMV 259 (741)
Q Consensus 182 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amV 259 (741)
+|=+-|--=|.-. .++++++.+.|.||= ++| | -+|+.|.
T Consensus 93 vDilQIgArn~rn--------------------------~~LL~a~g~t~kpV~------------lKr-G~~~t~~e~l 133 (258)
T TIGR01362 93 VDIIQIPAFLCRQ--------------------------TDLLVAAAKTGRIVN------------VKK-GQFLSPWDMK 133 (258)
T ss_pred CcEEEeCchhcch--------------------------HHHHHHHhccCCeEE------------ecC-CCcCCHHHHH
Confidence 9999997767622 258888888899982 222 4 5788776
Q ss_pred HHHHHHHHHHHHCCCCceEE
Q 004623 260 ESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 260 eSAle~~~i~e~~~F~divi 279 (741)
-+| +.+...|=+||++
T Consensus 134 ~aa----eyi~~~Gn~~viL 149 (258)
T TIGR01362 134 NVV----EKVLSTGNKNILL 149 (258)
T ss_pred HHH----HHHHHcCCCcEEE
Confidence 554 3455666666665
No 307
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=51.11 E-value=1.6e+02 Score=32.80 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcC--CCEEEEec---CCHHHHHHHHHHHHhhccCCcccc-eeec-cCCCHHHHHHHhhh-cCceeeC-
Q 004623 118 AGTVEEVMRIADQG--ADLVRITV---QGKREADACFEIKNSLVQKNYNIP-LVAD-IHFAPSVALRVAEC-FDKIRVN- 188 (741)
Q Consensus 118 ~atv~Qi~~L~~aG--ceiVRvav---p~~~~A~al~~I~~~L~~~~~~iP-LVAD-IHF~~~lAl~a~~~-vdkiRIN- 188 (741)
+...+.+..|.++| +|+|=+-+ .+..-.+.+++||+. ++.| +|+= + -.+..|..++++ +|.|++-
T Consensus 93 ~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~-----~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V~~ 166 (321)
T TIGR01306 93 ACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH-----LPDSFVIAGNV-GTPEAVRELENAGADATKVGI 166 (321)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh-----CCCCEEEEecC-CCHHHHHHHHHcCcCEEEECC
Confidence 55678899999999 79887766 235666678888885 6767 5554 4 489999999998 9999965
Q ss_pred -CCCC
Q 004623 189 -PGNF 192 (741)
Q Consensus 189 -PGNi 192 (741)
||-+
T Consensus 167 G~G~~ 171 (321)
T TIGR01306 167 GPGKV 171 (321)
T ss_pred CCCcc
Confidence 6765
No 308
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=51.09 E-value=81 Score=34.64 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE----ecCChhHHHHHHHHHHH
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVA 298 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~i~Ayrlla~ 298 (741)
.++..|+.|+. ||-+.-=|.++++++.+|... =.+.+++.++.+.+.||.++.+.+ .--+...+.+..+.+.+
T Consensus 102 ~l~~l~~~G~~-rvsiGvqS~~~~~l~~l~r~~--~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (377)
T PRK08599 102 KLQVLKDSGVN-RISLGVQTFNDELLKKIGRTH--NEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALA 178 (377)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHc
Confidence 56777778853 777777889999999988422 146788889999999998665544 44444555555554433
Q ss_pred HhhcCCC-CccccccccccCCCC
Q 004623 299 EMYVHGW-DYPLHLGVTEAGEGE 320 (741)
Q Consensus 299 ~m~~~g~-dyPLHLGVTEAG~~~ 320 (741)
+....+ -|||.+ +.|+..
T Consensus 179 -l~~~~i~~y~l~~---~pgT~~ 197 (377)
T PRK08599 179 -LDIPHYSAYSLIL---EPKTVF 197 (377)
T ss_pred -cCCCEEeeeceee---cCCChh
Confidence 211111 266654 555544
No 309
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=51.05 E-value=95 Score=32.70 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHH
Q 004623 220 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~ 299 (741)
+.++++.+|++|+.+-|=+| |++..+.+. +++.. .+-+.||+|+.+.. .|+.+..
T Consensus 143 l~~l~~~~k~~g~~~~i~Tn-G~~~~~~~~-----------------~ll~~--~d~~~isl~~~~~~----~~~~~~g- 197 (295)
T TIGR02494 143 ALALLQACHERGIHTAVETS-GFTPWETIE-----------------KVLPY--VDLFLFDIKHLDDE----RHKEVTG- 197 (295)
T ss_pred HHHHHHHHHHcCCcEeeeCC-CCCCHHHHH-----------------HHHhh--CCEEEEeeccCChH----HHHHHhC-
Confidence 46789999999987777666 555332111 23332 34578999998753 2433311
Q ss_pred hhcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC---CCcccchH
Q 004623 300 MYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE---PPEKEIDP 356 (741)
Q Consensus 300 m~~~g~dyPLHLGVTEAG~~~~G~IKSaiGIG~LL~~GIGDTIRVSLT~---dP~~EV~v 356 (741)
. ....|.. +|..|...|+==+||+.+.. +-.+|++-
T Consensus 198 -----~--------------~~~~vl~--~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~ 236 (295)
T TIGR02494 198 -----V--------------DNEPILE--NLEALAAAGKNVVIRIPVIPGFNDSEENIEA 236 (295)
T ss_pred -----C--------------ChHHHHH--HHHHHHhCCCcEEEEeceeCCcCCCHHHHHH
Confidence 0 1123333 45678888876667776554 22355654
No 310
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=50.92 E-value=24 Score=39.18 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=36.8
Q ss_pred CCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-ccceee
Q 004623 115 KDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (741)
Q Consensus 115 ~Dv~atv~----Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~-~iPLVA 166 (741)
-|-++|++ |...+++||||+| .|+.=-=--++.||+.|.+.|+ ++|+++
T Consensus 135 idND~Tl~~L~~~Avs~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 188 (320)
T cd04823 135 ILNDETVEVLCKQALVQAEAGADIV---APSDMMDGRIGAIREALDAEGFTNVSILS 188 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEE---EcccchhhHHHHHHHHHHHCCCCCCceee
Confidence 56677765 4556799999997 3443334467899999999999 699986
No 311
>PRK12928 lipoyl synthase; Provisional
Probab=50.84 E-value=2.8e+02 Score=30.20 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHhhccCC--cccceeeccCCCH--HHHHHHhhhcCc
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQKN--YNIPLVADIHFAP--SVALRVAECFDK 184 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~-----~~A~al~~I~~~L~~~~--~~iPLVADIHF~~--~lAl~a~~~vdk 184 (741)
..|.+.-++++.++.+.|..-|-++-.+. ..+..+.++.+.+++.. +.|-++ +-+|.. .-++..+... .
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l-tp~~~~~~~e~L~~l~~A-g 163 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL-TPDFWGGQRERLATVLAA-K 163 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe-ccccccCCHHHHHHHHHc-C
Confidence 47888888999999999987776764321 11233444444444332 223222 223321 1112211111 1
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHH--HhHHHhHHHHHHHHHhcC--CeEEEeeccCCCcHHHHhhcCCCchHHHH
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKEL--QHIEEVFSPLVEKCKKYG--RAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~el--e~I~e~~~~vv~~ake~g--~~IRIGvN~GSL~~~il~~yg~t~~amVe 260 (741)
..|=+-|+-.. ++..... ..--+...++++.|++.| +.+.-|.=-| +|.|.+.
T Consensus 164 ~~i~~hnlEt~-----------~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG---------~GET~ed--- 220 (290)
T PRK12928 164 PDVFNHNLETV-----------PRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLG---------LGETEDE--- 220 (290)
T ss_pred chhhcccCcCc-----------HHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEe---------CCCCHHH---
Confidence 11222222110 0100000 001234677889999998 7776555333 3566644
Q ss_pred HHHHHHHHHHHCCCCceEEE-----------EecCChhHHHHHHHHHHHH
Q 004623 261 SAFEFARICRKLDFHNFLFS-----------MKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 261 SAle~~~i~e~~~F~diviS-----------~KaSnv~~~i~Ayrlla~~ 299 (741)
-.++++.+++++++.+-|. ++---.+.--+.|+..+..
T Consensus 221 -~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 221 -VIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARE 269 (290)
T ss_pred -HHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHH
Confidence 4567888999999888773 2222345566777777776
No 312
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=50.62 E-value=1.4e+02 Score=36.85 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=81.8
Q ss_pred HHHHHHHH-HcCCCEEEEecCCHHHHHHHHHHHHhhccCCcc-----cceeeccCCCHHHHHHHhh---hcCceeeCCCC
Q 004623 121 VEEVMRIA-DQGADLVRITVQGKREADACFEIKNSLVQKNYN-----IPLVADIHFAPSVALRVAE---CFDKIRVNPGN 191 (741)
Q Consensus 121 v~Qi~~L~-~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~-----iPLVADIHF~~~lAl~a~~---~vdkiRINPGN 191 (741)
++-|++.. ++|+.=|||-+|-...++-+.++++.++..++. +|+++=|- .|..++.+=+ .+|-+=|-|..
T Consensus 616 lraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIE-tp~av~~~d~Ia~~vDfisIGtnD 694 (782)
T TIGR01418 616 CRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCE-VPSNALLADEFAKEFDGFSIGSND 694 (782)
T ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEC-cHHHHHHHHHHHHhCCEEEECchH
Confidence 44444544 678888999999888777777777777665542 33333222 2444432222 38999999986
Q ss_pred CCchh----hhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHH
Q 004623 192 FADRR----AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (741)
Q Consensus 192 ig~~~----k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~ 267 (741)
+.--- +.-... ..-|+.....+.+.++.++++|+++|+|+ |+ +|... +..| +.+.
T Consensus 695 Ltq~~lg~dR~n~~~---~~~~~~~hPaV~~~i~~vi~~a~~~g~~v--gi-cge~~-------~~~p--------~~~~ 753 (782)
T TIGR01418 695 LTQLTLGVDRDSGLV---AHLFDERNPAVLRLIEMAIKAAKEHGKKV--GI-CGQAP-------SDYP--------EVVE 753 (782)
T ss_pred HHHHHhCccCCchhh---cccCCCCCHHHHHHHHHHHHHHHhcCCeE--EE-eCCCC-------CCCH--------HHHH
Confidence 63200 000000 01133334556667888999999999997 66 55431 0022 3556
Q ss_pred HHHHCCCCceEEE
Q 004623 268 ICRKLDFHNFLFS 280 (741)
Q Consensus 268 i~e~~~F~diviS 280 (741)
.+-.+||+.+.++
T Consensus 754 ~l~~~G~~~ls~~ 766 (782)
T TIGR01418 754 FLVEEGIDSISLN 766 (782)
T ss_pred HHHHcCCCEEEEC
Confidence 7778999866554
No 313
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=50.54 E-value=1.7e+02 Score=33.33 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=45.4
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHH
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYR 294 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayr 294 (741)
.++.+++.|+- ||-+--=|++++++++.|-.. =.+.+++.++.+.+.||.+|.+.+=--=+..+.+..+
T Consensus 165 ~l~~l~~aGvn-RiSiGVQSf~d~vLk~lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~ 233 (449)
T PRK09058 165 KADAALDAGAN-RFSIGVQSFNTQVRRRAGRKD--DREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQ 233 (449)
T ss_pred HHHHHHHcCCC-EEEecCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHH
Confidence 46777888854 666656788999999998321 1356667778888999988877764332333333333
No 314
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=50.52 E-value=47 Score=39.47 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=52.1
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-c---CCH-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHH----HH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT-V---QGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRva-v---p~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl----~a 178 (741)
|||.++-.|.+.-++-++++.++||+.+++. + -.+ +..+-++.||+. +++||-.-.|-+.-+|+ +|
T Consensus 139 ~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~-----~~~pi~~H~Hnt~Gla~An~laA 213 (582)
T TIGR01108 139 SYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKR-----FGLPVHLHSHATTGMAEMALLKA 213 (582)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh-----CCCceEEEecCCCCcHHHHHHHH
Confidence 6666555799999999999999999998886 1 112 344555666654 56898777777777776 56
Q ss_pred hhh-cCcee
Q 004623 179 AEC-FDKIR 186 (741)
Q Consensus 179 ~~~-vdkiR 186 (741)
+++ ++-|=
T Consensus 214 veaGa~~vd 222 (582)
T TIGR01108 214 IEAGADGID 222 (582)
T ss_pred HHhCCCEEE
Confidence 665 66554
No 315
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=50.49 E-value=92 Score=33.72 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHhhccCCcccceeeccCC
Q 004623 121 VEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHF 170 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRv-avp~~~~A~al~~I~~~L~~~~~~iPLVADIHF 170 (741)
-+|+..|.++|+|++=+ |+|+.++++++-+..++. ...+|++.=+-|
T Consensus 143 ~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~---~~~~pv~is~~~ 190 (304)
T PRK09485 143 RPRIEALAEAGADLLACETIPNLDEAEALVELLKEE---FPGVPAWLSFTL 190 (304)
T ss_pred HHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHh---cCCCcEEEEEEe
Confidence 57899999999999999 799999999666555531 126888865554
No 316
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=50.45 E-value=1.7e+02 Score=29.45 Aligned_cols=169 Identities=16% Similarity=0.168 Sum_probs=99.9
Q ss_pred HHHHHHHHHHH-HcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccC-CCHHHHHHHhhhcCceeeCCCCCCch
Q 004623 118 AGTVEEVMRIA-DQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAECFDKIRVNPGNFADR 195 (741)
Q Consensus 118 ~atv~Qi~~L~-~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~~vdkiRINPGNig~~ 195 (741)
...+.+..... .++..|+=|.+-+.......+..++.+.+.|+..-.+-+++ -+.....+.+..+|.|=+.-||--.-
T Consensus 15 ~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~ 94 (210)
T cd03129 15 RPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRL 94 (210)
T ss_pred HHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHH
Confidence 33444443332 25677777766665555667777777777788755444443 23345557777899999999986432
Q ss_pred hhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhc--CCCchH-HHHHHHHHHHHHHHC
Q 004623 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY--GDSPRG-MVESAFEFARICRKL 272 (741)
Q Consensus 196 ~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~y--g~t~~a-mVeSAle~~~i~e~~ 272 (741)
-+.|... .-+..+.+.++ +|.++ +|+.+|+. ++.++ +.+|.. -+ ..+..+-+
T Consensus 95 ~~~l~~t---------------~~~~~i~~~~~-~G~v~-~G~SAGA~---~~~~~~~~~~~~~~~~-----~~~~~~GL 149 (210)
T cd03129 95 LSVLRET---------------PLLDAILKRVA-RGVVI-GGTSAGAA---VMGETGIGTTPSEPEV-----TPPMAPGL 149 (210)
T ss_pred HHHHHhC---------------ChHHHHHHHHH-cCCeE-EEcCHHHH---HhhhccccCCCCcccc-----ccccccCC
Confidence 2211111 13556777777 78776 89999987 66664 333311 00 01467778
Q ss_pred CCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccC
Q 004623 273 DFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG 317 (741)
Q Consensus 273 ~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG 317 (741)
||-+..|.-=-++...+-+..+++++. ..++=+|+.|..
T Consensus 150 gl~~~~i~pH~~~~~R~~rl~~~~~~~------~~~~gigide~t 188 (210)
T cd03129 150 GLLPGIIDPHFDSRGREGRLLELLAAN------PTPLGIGIDEGT 188 (210)
T ss_pred CCcceeECCCCCccchHHHHHHHHHhC------CCccEEEecCCc
Confidence 888777776655544444444444432 456667777754
No 317
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=50.41 E-value=1.5e+02 Score=30.75 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=70.3
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhh
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~ 180 (741)
..||.+|-. ..|.+..++|.++|.+.+- .+=|-+|--. +.++.|++ |.++| +++=+=-=|+..-|+.|++
T Consensus 51 ~~~v~~qv~----~~~~e~~i~~a~~l~~~~~-~~~iKIP~T~--~gl~ai~~-L~~~g--i~v~~T~V~s~~Qa~~Aa~ 120 (211)
T cd00956 51 DGPVSAQVV----STDAEGMVAEARKLASLGG-NVVVKIPVTE--DGLKAIKK-LSEEG--IKTNVTAIFSAAQALLAAK 120 (211)
T ss_pred CCCEEEEEE----eCCHHHHHHHHHHHHHhCC-CEEEEEcCcH--hHHHHHHH-HHHcC--CceeeEEecCHHHHHHHHH
Confidence 468999984 5789999999999998832 2334455443 44555544 55556 5555555699999999999
Q ss_pred h-cCceeeCC--CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 181 C-FDKIRVNP--GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 181 ~-vdkiRINP--GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
+ ++= |.| |=+.+. ..... +.++++.+.++.+|.+.+|=+
T Consensus 121 AGA~y--vsP~vgR~~~~-------------g~dg~----~~i~~i~~~~~~~~~~tkil~ 162 (211)
T cd00956 121 AGATY--VSPFVGRIDDL-------------GGDGM----ELIREIRTIFDNYGFDTKILA 162 (211)
T ss_pred cCCCE--EEEecChHhhc-------------CCCHH----HHHHHHHHHHHHcCCCceEEe
Confidence 7 443 444 222110 01122 246679999999998877644
No 318
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=50.37 E-value=93 Score=34.88 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhhh--c----CceeeC
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC--F----DKIRVN 188 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~~--v----dkiRIN 188 (741)
|.+.+++-.++|++.|...+===+| .++.+.+..++++ +++|+.+|=++ +..-+...++. + |-+.+.
T Consensus 217 ~~~~A~~~~~~l~~~~~~~iEeP~~-~~d~~~~~~L~~~-----~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d 290 (385)
T cd03326 217 DLETAIAYAKALAPYGLRWYEEPGD-PLDYALQAELADH-----YDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFD 290 (385)
T ss_pred CHHHHHHHHHHhhCcCCCEEECCCC-ccCHHHHHHHHhh-----CCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeC
Confidence 4445555555555555444332222 1345666667764 88999999664 44444444443 4 899999
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
+...|.-. ...++.+.|..+|+++
T Consensus 291 ~~~~GGit----------------------~~~kia~lA~a~gi~~ 314 (385)
T cd03326 291 PGLSYGLP----------------------EYLRMLDVLEAHGWSR 314 (385)
T ss_pred chhhCCHH----------------------HHHHHHHHHHHcCCCC
Confidence 99998743 3678999999999985
No 319
>PRK07329 hypothetical protein; Provisional
Probab=50.32 E-value=95 Score=32.36 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=53.9
Q ss_pred HHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHH
Q 004623 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (741)
Q Consensus 217 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrll 296 (741)
++.+++++++|+++|+++= +|.+++. +++..+ .. .+.++.|.++|-..|+++-=|.++...-.-+...
T Consensus 164 ~~~~~~i~~~~~~~~~~lE--iNt~~~~-----~~~~~~-~~----~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a 231 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFE--LNTKSMY-----LYGNEG-LY----RYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDA 231 (246)
T ss_pred HHHHHHHHHHHHHcCCeEE--EECcccc-----cCCCCc-ch----HHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHH
Confidence 4556789999999999994 5888873 333222 11 3348899999987899999999888765656555
Q ss_pred HHHhhcCCC
Q 004623 297 VAEMYVHGW 305 (741)
Q Consensus 297 a~~m~~~g~ 305 (741)
.+.+.+.|+
T Consensus 232 ~~~l~~~g~ 240 (246)
T PRK07329 232 QKLLKEHGI 240 (246)
T ss_pred HHHHHHcCC
Confidence 555544444
No 320
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=50.28 E-value=1.5e+02 Score=30.31 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH------HHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCCC
Q 004623 120 TVEEVMRIADQGADLVRITVQGK------READACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGN 191 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvavp~~------~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPGN 191 (741)
-+++++.+.+.|++.+=+.--+. +.+..+++|.+. +++|++.+-=.+ ..-+..+++. +++|=|+=..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-----~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-----VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-----cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 45677778889999886653332 335567777774 789999853333 4445556665 8877552222
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~ 271 (741)
+.+ .+.+.++++.+....+.+-|-+..|-+ .- .|...+. -.+.++.++.+++
T Consensus 109 ~~~----------------------~~~~~~i~~~~g~~~i~~sid~~~~~v----~~-~g~~~~~-~~~~~~~~~~~~~ 160 (241)
T PRK13585 109 VEN----------------------PEIVRELSEEFGSERVMVSLDAKDGEV----VI-KGWTEKT-GYTPVEAAKRFEE 160 (241)
T ss_pred hhC----------------------hHHHHHHHHHhCCCcEEEEEEeeCCEE----EE-CCCcccC-CCCHHHHHHHHHH
Confidence 211 012444444432222333333333311 11 1311100 1245678888899
Q ss_pred CCCCceEEE-EecC--ChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 272 LDFHNFLFS-MKAS--NPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 272 ~~F~diviS-~KaS--nv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
.|++-|.+. .+.. ....-.+.++.+++. .+.|+
T Consensus 161 ~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-----~~iPv 196 (241)
T PRK13585 161 LGAGSILFTNVDVEGLLEGVNTEPVKELVDS-----VDIPV 196 (241)
T ss_pred cCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----CCCCE
Confidence 999888763 4331 111123455666666 56664
No 321
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=50.14 E-value=1.4e+02 Score=32.21 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCeEE-EeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE
Q 004623 220 FSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 220 ~~~vv~~ake~g~~IR-IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 281 (741)
+.++++.+++.++.+. |-+..||-..+.-. | ...++.+.+.++.+++.|++-=.||+
T Consensus 150 ~~~~~~~~~~~~l~l~Gl~~H~gs~~~d~~~-~----~~~~~~~~~~~~~l~~~g~~~~~id~ 207 (368)
T cd06810 150 ARAALERAKELDLRLVGLHFHVGSQILDLET-I----VQALSDARELIEELVEMGFPLEMLDL 207 (368)
T ss_pred HHHHHHHHHhCCCcEEEEEEcCCcCCCCHHH-H----HHHHHHHHHHHHHHHhcCCCCCEEEe
Confidence 5667778888773321 33567775433211 1 35667777778888777775445665
No 322
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=49.74 E-value=4.1e+02 Score=32.02 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHcCCCEEEE----ecC------CHHHHHHHHHHHHhhccCCcccce---------eec
Q 004623 107 QTMTTNDTKDVAGTVEEVMRIADQGADLVRI----TVQ------GKREADACFEIKNSLVQKNYNIPL---------VAD 167 (741)
Q Consensus 107 QSMt~t~T~Dv~atv~Qi~~L~~aGceiVRv----avp------~~~~A~al~~I~~~L~~~~~~iPL---------VAD 167 (741)
||=..| -...+..+.=...|.++|.+.+=+ |.+ +...-+.|+.|++. .-++|| |+=
T Consensus 17 Qs~~~t-r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~----~~~~~lqml~Rg~n~vg~ 91 (593)
T PRK14040 17 QSLFAT-RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKA----MPNTPQQMLLRGQNLLGY 91 (593)
T ss_pred cccccc-ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHh----CCCCeEEEEecCcceecc
Q ss_pred cC----CCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC
Q 004623 168 IH----FAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 168 IH----F~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 242 (741)
-| .-....-.|+++ ++-+||=- -+.+-+ ++.+.++.||++|.-....++
T Consensus 92 ~~ypddvv~~~v~~a~~~Gid~~rifd-~lnd~~----------------------~~~~ai~~ak~~G~~~~~~i~--- 145 (593)
T PRK14040 92 RHYADDVVERFVERAVKNGMDVFRVFD-AMNDPR----------------------NLETALKAVRKVGAHAQGTLS--- 145 (593)
T ss_pred ccCcHHHHHHHHHHHHhcCCCEEEEee-eCCcHH----------------------HHHHHHHHHHHcCCeEEEEEE---
Q ss_pred CcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccc
Q 004623 243 LSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (741)
Q Consensus 243 L~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHL 311 (741)
|..+|+.=.+--++.++.+++.|-+ .|++|-+.=..+=+....|.+++.++- +.|+|+
T Consensus 146 --------yt~~p~~~~~~~~~~a~~l~~~Gad--~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~pi~~ 203 (593)
T PRK14040 146 --------YTTSPVHTLQTWVDLAKQLEDMGVD--SLCIKDMAGLLKPYAAYELVSRIKKRV-DVPLHL 203 (593)
T ss_pred --------EeeCCccCHHHHHHHHHHHHHcCCC--EEEECCCCCCcCHHHHHHHHHHHHHhc-CCeEEE
No 323
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=49.68 E-value=1.8e+02 Score=31.73 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cCC--HH-HHHHHHHHHHhhccCCcccceee
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRIT---VQG--KR-EADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRva---vp~--~~-~A~al~~I~~~L~~~~~~iPLVA 166 (741)
...+.+.-+++++.+.+.|+.-|.++ -|+ .+ -.+.+..|++. ..++.+.|
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~----~~~i~~~~ 123 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEE----VPGMHIHA 123 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH----CCCceEEe
Confidence 35688999999999999999999998 222 22 25556666654 33455444
No 324
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=49.60 E-value=50 Score=38.71 Aligned_cols=70 Identities=26% Similarity=0.333 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCc--ccceeeccCCCHHHHH----HHhh
Q 004623 112 NDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNY--NIPLVADIHFAPSVAL----RVAE 180 (741)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRva----vp~~-~~A~al~~I~~~L~~~~~--~iPLVADIHF~~~lAl----~a~~ 180 (741)
.+-.|.+.-++.+++++++||+.|++. .-++ +..+-++.||+. + ++||-.-.|-++-+|+ +|++
T Consensus 149 sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-----~~~~ipI~~H~Hnt~GlA~An~laAie 223 (499)
T PRK12330 149 SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-----CGEDTRINLHCHSTTGVTLVSLMKAIE 223 (499)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-----CCCCCeEEEEeCCCCCcHHHHHHHHHH
Confidence 445689999999999999999988876 1222 444556666664 5 5898777777776766 5667
Q ss_pred h-cCcee
Q 004623 181 C-FDKIR 186 (741)
Q Consensus 181 ~-vdkiR 186 (741)
+ ++-|=
T Consensus 224 AGad~vD 230 (499)
T PRK12330 224 AGVDVVD 230 (499)
T ss_pred cCCCEEE
Confidence 5 66554
No 325
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=49.37 E-value=86 Score=34.36 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEe
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 282 (741)
.++..|+.|+ -||.+.-=|+++++++..|-. .-.+.+.+.++.+.+.||.++.+.+=
T Consensus 102 ~l~~l~~~Gv-~risiGvqS~~~~~l~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli 158 (360)
T TIGR00539 102 WCKGLKGAGI-NRLSLGVQSFRDDKLLFLGRQ--HSAKNIAPAIETALKSGIENISLDLM 158 (360)
T ss_pred HHHHHHHcCC-CEEEEecccCChHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc
Confidence 5677888885 488888889999999999731 11566777788889999987665543
No 326
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=49.33 E-value=83 Score=33.43 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=45.8
Q ss_pred CceEEEeccCCC--CCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcc-cceeeccCCCHH
Q 004623 102 HPIRVQTMTTND--TKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYN-IPLVADIHFAPS 173 (741)
Q Consensus 102 ~PI~VQSMt~t~--T~Dv~atv~Qi~~L~~aGceiVRva----vp~~-~~A~al~~I~~~L~~~~~~-iPLVADIHF~~~ 173 (741)
..|.+++|.-.+ ..|.+..++.++++.++|++.|+++ +-.+ +-++-++.+++. ++ +||=.=.|=|.-
T Consensus 133 ~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~~l~~H~Hnd~G 207 (273)
T cd07941 133 REVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRER-----LPGVPLGIHAHNDSG 207 (273)
T ss_pred CeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-----CCCCeeEEEecCCCC
Confidence 357777774432 3578888999999999999988877 2222 334444555553 44 787665555566
Q ss_pred HHH
Q 004623 174 VAL 176 (741)
Q Consensus 174 lAl 176 (741)
+|+
T Consensus 208 la~ 210 (273)
T cd07941 208 LAV 210 (273)
T ss_pred cHH
Confidence 665
No 327
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=49.20 E-value=2.2e+02 Score=28.62 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=60.6
Q ss_pred cCCcccceeeccCCC-HH----HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHh-
Q 004623 157 QKNYNIPLVADIHFA-PS----VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK- 229 (741)
Q Consensus 157 ~~~~~iPLVADIHF~-~~----lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake- 229 (741)
....+.|+++=|+-+ +. .|..+.++ +|.|=||=|.= ... -++.+|=..+++=-+.+.+++++.++
T Consensus 50 ~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p---~~~-----~~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 50 RNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCP---SPK-----VTKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred cCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCC---HHH-----HhCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 345679999998754 54 45455554 89999986531 100 01112221121111223344444443
Q ss_pred cCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEe
Q 004623 230 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282 (741)
Q Consensus 230 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 282 (741)
-++|+++.+|.|.- .+ +.+.+.++.+++.|.+-|.++..
T Consensus 122 ~~~~v~vk~r~~~~-----------~~---~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 122 VPIPVTVKIRLGWD-----------DE---EETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred cCCCEEEEEeeccC-----------Cc---hHHHHHHHHHHHhCCCEEEECCC
Confidence 23789999876532 11 67889999999999988877653
No 328
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=49.19 E-value=66 Score=34.45 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 144 ~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
..+.|+.+.++|.+.|+.+-|--|= ++.....|.+. ++.|=+.-|.|++.. +.++..+|+++|.+
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A~~~GAd~VELhTG~Ya~a~--------~~~~~~~el~~i~~---- 173 (234)
T cd00003 108 QAEKLKPIIERLKDAGIRVSLFIDP--DPEQIEAAKEVGADRVELHTGPYANAY--------DKAEREAELERIAK---- 173 (234)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcCC--------CchhHHHHHHHHHH----
Confidence 4566777777777778877776653 34444455565 999999999998732 33455667777755
Q ss_pred HHHHHHhcCCeEEEeeccCC
Q 004623 223 LVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GS 242 (741)
-.+.|++.|. +||+|-
T Consensus 174 aa~~a~~~GL----~VnAGH 189 (234)
T cd00003 174 AAKLARELGL----GVNAGH 189 (234)
T ss_pred HHHHHHHcCC----EEecCC
Confidence 6677888774 788873
No 329
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=49.15 E-value=6.8 Score=30.31 Aligned_cols=17 Identities=29% Similarity=0.802 Sum_probs=11.2
Q ss_pred cccCcceeecCCCCccc
Q 004623 635 MRNTKTEYVSCPSCGRT 651 (741)
Q Consensus 635 lR~~kte~ISCPsCGRT 651 (741)
-|....++|||+.||-.
T Consensus 14 ~RR~~~~~isC~~CGPr 30 (35)
T PF07503_consen 14 NRRFHYQFISCTNCGPR 30 (35)
T ss_dssp STTTT-TT--BTTCC-S
T ss_pred CCcccCcCccCCCCCCC
Confidence 37788999999999975
No 330
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=49.08 E-value=4.6e+02 Score=30.80 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH---HHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE---ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~---A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGN 191 (741)
.+.+..+.|+.+....|||+|=+-+--.+. .+.+.++.+. .++|++ |-+|-.-+. |+
T Consensus 32 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~-----~~~plI----~T~R~~~eG-----------G~ 91 (529)
T PLN02520 32 DSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQ-----SPLPTL----VTYRPKWEG-----------GQ 91 (529)
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhc-----CCCcEE----EEeccHHHC-----------CC
Q ss_pred CCchhhhccccccchHHHHHHHHhH--------------HHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHI--------------EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I--------------~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~a 257 (741)
+-. ++++|.+-++.. .+++.+++..++..|+.+ |.-+| -|..||.
T Consensus 92 ~~~----------~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~v-I~S~H---------~f~~tP~- 150 (529)
T PLN02520 92 YEG----------DENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKV-IVSSH---------NYENTPS- 150 (529)
T ss_pred CCC----------CHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEE-EEEec---------CCCCCCC-
Q ss_pred HHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 258 MVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 258 mVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
.+.-.+.++-+++.|.+=++|-..+.+..+..+.+++..+. +.|+
T Consensus 151 -~~el~~~~~~~~~~gaDi~Kia~~~~~~~D~~~ll~~~~~~------~~p~ 195 (529)
T PLN02520 151 -VEELGNLVARIQATGADIVKIATTALDITDVARMFQITVHS------QVPT 195 (529)
T ss_pred -HHHHHHHHHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhhc------CCCE
No 331
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=48.81 E-value=2.8e+02 Score=28.54 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCC--HH----HHHHHhhh-cCce
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA--PS----VALRVAEC-FDKI 185 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~--~~----lAl~a~~~-vdki 185 (741)
|..|.+.+.+=+.++.+. ..++-+-.+=..+ ...++.+.|++.+ .|+++|.-|. +. .+..+.+. +|-+
T Consensus 6 D~~~~~~a~~i~~~~~~~-v~~iKvg~~l~~~--~g~~~i~~l~~~~--~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~ 80 (216)
T cd04725 6 DPPDEEFALALIDALGPY-VCAVKVGLELFEA--AGPEIVKELRELG--FLVFLDLKLGDIPNTVAAAAEALLGLGADAV 80 (216)
T ss_pred CCCCHHHHHHHHHhcCCc-ccEEEECHHHHHh--cCHHHHHHHHHCC--CcEEEEeecCchHHHHHHHHHHHHhcCCCEE
Confidence 555666666666555554 3466666554443 3445555666666 8999998765 33 22234454 8999
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec-cCCCcHHHHhhcCCCchHHHHHHHH
Q 004623 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFE 264 (741)
Q Consensus 186 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN-~GSL~~~il~~yg~t~~amVeSAle 264 (741)
=++| +++.+ .++++++.+++++.-+ ++|- --|.+..-++. +.. ...-+-.++
T Consensus 81 Tvh~--~~G~~----------------------~l~~~~~~~~~~~~~~-~~v~~lss~~~~~~q~-~~~-~~~~~~~~~ 133 (216)
T cd04725 81 TVHP--YGGSD----------------------MLKAALEAAEEKGKGL-FAVTVLSSPGALDLQE-GIP-GSLEDLVER 133 (216)
T ss_pred EECC--cCCHH----------------------HHHHHHHHHhccCCeE-EEEEcCCCCCHHHHHh-hhc-CCHHHHHHH
Confidence 9998 33322 4788889888766433 2332 12444443443 311 123455667
Q ss_pred HHHHHHHCCCCceEEEEec
Q 004623 265 FARICRKLDFHNFLFSMKA 283 (741)
Q Consensus 265 ~~~i~e~~~F~diviS~Ka 283 (741)
.++++.+.|.+-+|.|-..
T Consensus 134 ~~~~a~~~g~~G~V~~~~~ 152 (216)
T cd04725 134 LAKLAREAGVDGVVCGATE 152 (216)
T ss_pred HHHHHHHHCCCEEEECCcc
Confidence 7788888998778887643
No 332
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=48.72 E-value=4.6e+02 Score=29.87 Aligned_cols=144 Identities=18% Similarity=0.295 Sum_probs=91.8
Q ss_pred EEEceeecCCCC-ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec---CCH---------------HHHHHHHHH
Q 004623 91 VMVGNVAIGSEH-PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV---QGK---------------READACFEI 151 (741)
Q Consensus 91 V~VG~V~IGG~~-PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav---p~~---------------~~A~al~~I 151 (741)
++||+-.||-++ |..|==+.-..--|.+-+.+-|..-+++|||.|.+-. +|. -....+.++
T Consensus 2 ~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel 81 (347)
T COG2089 2 IKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYEL 81 (347)
T ss_pred eeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHH
Confidence 679999999855 5556666677788999999999999999999999875 211 122233333
Q ss_pred HHh--------------hccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhH
Q 004623 152 KNS--------------LVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI 216 (741)
Q Consensus 152 ~~~--------------L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I 216 (741)
.+. -++.|+ ++-=--|++..|...-.. +..+.|--|-+-+
T Consensus 82 ~e~~~~p~e~~~~Lke~a~~~Gi---~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~---------------------- 136 (347)
T COG2089 82 YEEAETPLEWHAQLKEYARKRGI---IFFSSPFDLTAVDLLESLNPPAYKIASGEIND---------------------- 136 (347)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCe---EEEecCCCHHHHHHHHhcCCCeEEecCccccC----------------------
Confidence 332 222332 222234666555544443 5555555554433
Q ss_pred HHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEE
Q 004623 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 217 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi 279 (741)
-++++..-..|.||=+-+ | -+-.++-.+-+++|++.|=.|+++
T Consensus 137 ----~plik~iA~~~kPiIlST-------------G---ma~~~ei~~av~~~r~~g~~~i~L 179 (347)
T COG2089 137 ----LPLIKYIAKKGKPIILST-------------G---MATIEEIEEAVAILRENGNPDIAL 179 (347)
T ss_pred ----hHHHHHHHhcCCCEEEEc-------------c---cccHHHHHHHHHHHHhcCCCCeEE
Confidence 568888888888996654 2 223445556778899998877665
No 333
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=48.71 E-value=56 Score=38.01 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=52.3
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHH----HH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRva----vp~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl----~a 178 (741)
|.|.++-.+++-.++.+++++++||+.|.+. .-.+ +..+-++.||+ ..++||-.-.|-+.-+|+ +|
T Consensus 153 ~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-----~~~~pi~~H~Hnt~GlA~An~laA 227 (468)
T PRK12581 153 AYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-----MTNLPLIVHTHATSGISQMTYLAA 227 (468)
T ss_pred EEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-----ccCCeEEEEeCCCCccHHHHHHHH
Confidence 4455666789999999999999999988876 1112 33444455544 357998777777777766 56
Q ss_pred hhh-cCcee--eCC
Q 004623 179 AEC-FDKIR--VNP 189 (741)
Q Consensus 179 ~~~-vdkiR--INP 189 (741)
+++ ++-|= |||
T Consensus 228 ieAGad~vD~ai~g 241 (468)
T PRK12581 228 VEAGADRIDTALSP 241 (468)
T ss_pred HHcCCCEEEeeccc
Confidence 665 66554 454
No 334
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=48.69 E-value=3.5e+02 Score=28.80 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=40.8
Q ss_pred HHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHH
Q 004623 216 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 295 (741)
Q Consensus 216 I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrl 295 (741)
+.+....++.+|+++|++. |+-.+| + +.++.+-+.||+-+.++. |...+.++.+.
T Consensus 188 v~~a~~~v~~aa~a~G~~~--g~~~~~------------~--------~~~~~~~~~G~~~~~~~~---D~~~l~~~~~~ 242 (249)
T TIGR03239 188 VQKAIRHIFDRAAAHGKPC--GILAPV------------E--------ADARRYLEWGATFVAVGS---DLGVFRSATQA 242 (249)
T ss_pred HHHHHHHHHHHHHHcCCCE--EEcCCC------------H--------HHHHHHHHcCCCEEEEhH---HHHHHHHHHHH
Confidence 4556778999999999997 652222 2 244555678988776654 77777777776
Q ss_pred HHHH
Q 004623 296 LVAE 299 (741)
Q Consensus 296 la~~ 299 (741)
..+.
T Consensus 243 ~~~~ 246 (249)
T TIGR03239 243 LRDK 246 (249)
T ss_pred HHHH
Confidence 6655
No 335
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=48.54 E-value=3.9e+02 Score=29.01 Aligned_cols=158 Identities=11% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC--------CHHHHHHHHHHHHhhccCCcc-cceeeccCCC----HHHHHHHh
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQ--------GKREADACFEIKNSLVQKNYN-IPLVADIHFA----PSVALRVA 179 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp--------~~~~A~al~~I~~~L~~~~~~-iPLVADIHF~----~~lAl~a~ 179 (741)
++.|.+-.-+-|..-++.++-++=-..| -..-+..+..+.++ ++ +|++ +|.| +....+|+
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~-----~~~vpv~--lhlDH~~~~e~i~~ai 94 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIER-----MSIVPVA--LHLDHGSSYESCIKAI 94 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHH-----CCCCeEE--EECCCCCCHHHHHHHH
Q ss_pred hh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE--EeeccCCCcHHHHh--hcCCC
Q 004623 180 EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR--IGTNHGSLSDRIMS--YYGDS 254 (741)
Q Consensus 180 ~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR--IGvN~GSL~~~il~--~yg~t 254 (741)
+. ++.|=|-.-+....+ .-+..+++++.|+.+|+.+- ||. .|.-++.+.. ..-.+
T Consensus 95 ~~Gf~sVmid~s~l~~~e-------------------ni~~t~~v~~~a~~~gv~Ve~ElG~-~gg~ed~~~g~~~~~t~ 154 (282)
T TIGR01859 95 KAGFSSVMIDGSHLPFEE-------------------NLALTKKVVEIAHAKGVSVEAELGT-LGGIEDGVDEKEAELAD 154 (282)
T ss_pred HcCCCEEEECCCCCCHHH-------------------HHHHHHHHHHHHHHcCCEEEEeeCC-CcCccccccccccccCC
Q ss_pred chHHHHHHHHHHHHHHHCCCCceEEE------EecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 255 PRGMVESAFEFARICRKLDFHNFLFS------MKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 255 ~~amVeSAle~~~i~e~~~F~diviS------~KaSnv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
|+...+.. ++.|-+-+.+| +-...+..-++-.+.+.++ ++.||
T Consensus 155 ~eea~~f~-------~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~-----~~iPl 203 (282)
T TIGR01859 155 PDEAEQFV-------KETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL-----TNIPL 203 (282)
T ss_pred HHHHHHHH-------HHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH-----hCCCE
No 336
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=48.35 E-value=55 Score=37.99 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=50.7
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHH----HH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRva----vp~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl----~a 178 (741)
|+|-++-.+.+.-++-++++.++||+.|++. .-++ +..+-++.||++ +++||-.-.|-+.-+|+ +|
T Consensus 143 ~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~-----~~vpI~~H~Hnt~GlA~AN~laA 217 (467)
T PRK14041 143 SYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKK-----FGVPVEVHSHCTTGLASLAYLAA 217 (467)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHh-----cCCceEEEecCCCCcHHHHHHHH
Confidence 5555555678888999999999999988876 1222 445556666664 56888766666666665 56
Q ss_pred hhh-cCcee
Q 004623 179 AEC-FDKIR 186 (741)
Q Consensus 179 ~~~-vdkiR 186 (741)
+++ ++-|=
T Consensus 218 ieaGad~vD 226 (467)
T PRK14041 218 VEAGADMFD 226 (467)
T ss_pred HHhCCCEEE
Confidence 666 66554
No 337
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=48.14 E-value=1.3e+02 Score=33.45 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCC--CEEEEecCC---HHHHHHHHHHHHhhccCCcc-cceee-ccCCCHHHHHHHhhh-cCcee--eC
Q 004623 119 GTVEEVMRIADQGA--DLVRITVQG---KREADACFEIKNSLVQKNYN-IPLVA-DIHFAPSVALRVAEC-FDKIR--VN 188 (741)
Q Consensus 119 atv~Qi~~L~~aGc--eiVRvavp~---~~~A~al~~I~~~L~~~~~~-iPLVA-DIHF~~~lAl~a~~~-vdkiR--IN 188 (741)
...+++.+|.+||+ |++=|-+-+ ....+.+++||+. ++ +|+|| |+= ++.-|..++++ +|.|+ +-
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~-----~p~~~vi~g~V~-t~e~a~~l~~aGad~i~vg~~ 170 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH-----LPETFVIAGNVG-TPEAVRELENAGADATKVGIG 170 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh-----CCCCeEEEEecC-CHHHHHHHHHcCcCEEEECCC
Confidence 45789999999955 988774332 3444457777775 76 99999 887 89999999998 99877 55
Q ss_pred CCCC
Q 004623 189 PGNF 192 (741)
Q Consensus 189 PGNi 192 (741)
||-+
T Consensus 171 ~G~~ 174 (326)
T PRK05458 171 PGKV 174 (326)
T ss_pred CCcc
Confidence 7744
No 338
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=47.62 E-value=1.3e+02 Score=34.03 Aligned_cols=101 Identities=11% Similarity=0.197 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcC--CCEEEEecCCHH---HHHHHHHHHHhhccCCcc-cceeeccCCCHHHHHHHhhh-cCceee--C
Q 004623 118 AGTVEEVMRIADQG--ADLVRITVQGKR---EADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIRV--N 188 (741)
Q Consensus 118 ~atv~Qi~~L~~aG--ceiVRvavp~~~---~A~al~~I~~~L~~~~~~-iPLVADIHF~~~lAl~a~~~-vdkiRI--N 188 (741)
+...+.+..|.++| .|+|=|-+-+-. ..+.++.||+. ++ .++||===-.+.-|..++++ +|.|++ -
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~-----~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiG 180 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA-----FPEHTIMAGNVVTGEMVEELILSGADIVKVGIG 180 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh-----CCCCeEEEecccCHHHHHHHHHcCCCEEEEccc
Confidence 55678999999996 999888765543 34455566654 44 78888755678999999998 998885 5
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
||-+-..+.. .--- |. .+ ..+.++.++|+.+++||
T Consensus 181 pGSicttR~~-~Gvg-----~p-ql----tAv~~~a~aa~~~~v~V 215 (343)
T TIGR01305 181 PGSVCTTRTK-TGVG-----YP-QL----SAVIECADAAHGLKGHI 215 (343)
T ss_pred CCCcccCcee-CCCC-----cC-HH----HHHHHHHHHhccCCCeE
Confidence 9977443311 0000 00 11 13455677777777776
No 339
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=47.50 E-value=5.2e+02 Score=31.06 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHhhccCCcccceeec---------cCCCHH--
Q 004623 115 KDVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLVAD---------IHFAPS-- 173 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRva----------vp~~~~A~al~~I~~~L~~~~~~iPLVAD---------IHF~~~-- 173 (741)
..++.-+.=+..|.++|...+=+. .-+++.-+.|+.+++.+ -++++.+= -|+.-.
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~----~~~~l~~l~Rg~N~~gy~~ypd~vv 98 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKAL----PNTPLQMLLRGQNLVGYRHYPDDVV 98 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhC----CCCEEEEEeccccccccccccchhh
Confidence 344556677788999999998886 13556778888888752 23554433 233212
Q ss_pred --HHHHHhhh-cCceeeC-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHh
Q 004623 174 --VALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS 249 (741)
Q Consensus 174 --lAl~a~~~-vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~ 249 (741)
....|+++ +|.+||- |-|= + +++.+.++.||++|.-+...+-. +.++
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd--------------------~----~n~~~~i~~ak~~G~~v~~~i~~-t~~p---- 149 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALND--------------------V----RNMEVAIKAAKKAGAHVQGTISY-TTSP---- 149 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecCh--------------------H----HHHHHHHHHHHHcCCEEEEEEEe-ccCC----
Confidence 23355666 9999973 1111 0 24677889999999988855411 1111
Q ss_pred hcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccc
Q 004623 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (741)
Q Consensus 250 ~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHL 311 (741)
+| ++ +--++.++-+++.|-+ .|++|-+.=..+=+..+.|.+.+.++ ++.|+|+
T Consensus 150 ~~--t~----~~~~~~a~~l~~~Gad--~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~~pi~~ 202 (592)
T PRK09282 150 VH--TI----EKYVELAKELEEMGCD--SICIKDMAGLLTPYAAYELVKALKEE-VDLPVQL 202 (592)
T ss_pred CC--CH----HHHHHHHHHHHHcCCC--EEEECCcCCCcCHHHHHHHHHHHHHh-CCCeEEE
Confidence 12 33 4445566667788887 46778776444433333333333221 4566665
No 340
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=47.39 E-value=2.3e+02 Score=32.11 Aligned_cols=243 Identities=19% Similarity=0.203 Sum_probs=133.6
Q ss_pred ccccccccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh
Q 004623 75 KYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNS 154 (741)
Q Consensus 75 ~YC~s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~ 154 (741)
.||. ++. .|+-.-.|..-..+|++. +..++++...-..|+-|.=- =|-.+--+.+..|+.
T Consensus 43 fYCP-vs~-~r~gkdviyaNErpV~~~----------------eDii~ea~~~~a~GasiTGG-dPl~~ieR~~~~ir~- 102 (353)
T COG2108 43 FYCP-VSD-ERKGKDVIYANERPVKSV----------------EDIIEEAKLMDALGASITGG-DPLLEIERTVEYIRL- 102 (353)
T ss_pred ccCc-CCH-HhcCCcceeecccccCcH----------------HHHHHHHHHhccccccccCC-ChHHHHHHHHHHHHH-
Confidence 4776 222 233345566655555543 66677777777777765321 122233233333322
Q ss_pred hccC---CcccceeeccCCCHHHHHHHhh-h-cCceeeCCCCCCchhhhccccccchHHHHHHHH---------------
Q 004623 155 LVQK---NYNIPLVADIHFAPSVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQ--------------- 214 (741)
Q Consensus 155 L~~~---~~~iPLVADIHF~~~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele--------------- 214 (741)
|.+. ..++=|-+-.-.--.=+++++. + +|-||++|+-.+++- .+.|.+-+.
T Consensus 103 LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~---------~e~~i~~l~~A~~~g~dvG~EiPa 173 (353)
T COG2108 103 LKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKS---------SEKYIENLKIAKKYGMDVGVEIPA 173 (353)
T ss_pred HHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccc---------cHHHHHHHHHHHHhCccceeecCC
Confidence 3322 2344443322222234555554 4 999999998222211 233444333
Q ss_pred --hHHHhHHHHHHHHHhcCCeEEEeeccCCC--c----HHHHhh-cC---C---CchHHHHHHHHHHHHHHHCCCCceEE
Q 004623 215 --HIEEVFSPLVEKCKKYGRAVRIGTNHGSL--S----DRIMSY-YG---D---SPRGMVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 215 --~I~e~~~~vv~~ake~g~~IRIGvN~GSL--~----~~il~~-yg---~---t~~amVeSAle~~~i~e~~~F~divi 279 (741)
-.++++.++++.+-+.+... +|---| + .+++++ |- + .+.+=-|.|+.-++++++. .++-|
T Consensus 174 ipg~e~~i~e~~~~~~~~~~~F---lNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~~~~~~--~~l~v 248 (353)
T COG2108 174 IPGEEEAILEFAKALDENGLDF---LNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLKWAEEN--WDLTV 248 (353)
T ss_pred CcchHHHHHHHHHHHHhcccce---eeeeeeeeccchHHHHHhcCceeccCCcccccchHHHHHHHHHHHhcc--cCceE
Confidence 23455556666666665221 222222 1 233433 32 1 3677788999999999987 77778
Q ss_pred EEecCChhHHHHHHHHHHHHhhcCCCCcc-ccccccccCCCCCCchhhHHHHHHHhhcCCCceeEE-ecCCCCcccchHH
Q 004623 280 SMKASNPVVMVQAYRLLVAEMYVHGWDYP-LHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRV-SLTEPPEKEIDPC 357 (741)
Q Consensus 280 S~KaSnv~~~i~Ayrlla~~m~~~g~dyP-LHLGVTEAG~~~~G~IKSaiGIG~LL~~GIGDTIRV-SLT~dP~~EV~v~ 357 (741)
-.=+|..++.+|-...|-+. - ++-+ -|==+||=|+..-|++.--- |.+++.--+.| .++-++- |.+.
T Consensus 249 H~Css~~KDavQ~r~Rl~r~-A---kn~ak~yeeit~dGtl~~gi~~~~~-----~~~~~~~e~~vE~~~~~~~--ie~~ 317 (353)
T COG2108 249 HYCSSKFKDAVQLRNRLKRM-A---KNVAKPYEEITEDGTLVYGIVEGGS-----LAEELIEELEVEWLYVGGK--IEIP 317 (353)
T ss_pred EECchhhhHHHHHHHHHHHH-H---hhcCCcceeecCCCcEEEEEEecCc-----chhHHHHhhceEEEecCCc--cccC
Confidence 77888889999887666543 2 2322 35668888888777764221 77888888888 5555554 4444
Q ss_pred HHHHH
Q 004623 358 RRLAN 362 (741)
Q Consensus 358 ~~il~ 362 (741)
.+++.
T Consensus 318 ~evle 322 (353)
T COG2108 318 PEVLE 322 (353)
T ss_pred HHHHH
Confidence 45544
No 341
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.29 E-value=1.2e+02 Score=32.37 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=63.3
Q ss_pred cCCCCceEEE-eccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCH---------------HHHHHHHHHHHhhccCC
Q 004623 98 IGSEHPIRVQ-TMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGK---------------READACFEIKNSLVQKN 159 (741)
Q Consensus 98 IGG~~PI~VQ-SMt~--t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~---------------~~A~al~~I~~~L~~~~ 159 (741)
+|.+-||.|= |... .+..+.+.+++-+++|+++|+|+|=++..+. ...+.++.|++.
T Consensus 205 ~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~----- 279 (327)
T cd02803 205 VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA----- 279 (327)
T ss_pred cCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-----
Confidence 4556676652 1111 1224678888889999999999997654322 223556677775
Q ss_pred cccceeeccCCC-HHHHHHHhhh--cCceeeCCCCCCchh
Q 004623 160 YNIPLVADIHFA-PSVALRVAEC--FDKIRVNPGNFADRR 196 (741)
Q Consensus 160 ~~iPLVADIHF~-~~lAl~a~~~--vdkiRINPGNig~~~ 196 (741)
+++|+++.--+. +.-|.++++. +|-|=+-=+-+.+.+
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~ 319 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPD 319 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCcc
Confidence 679999987776 8888888874 888777666665543
No 342
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=47.14 E-value=4.5e+02 Score=29.29 Aligned_cols=170 Identities=19% Similarity=0.257 Sum_probs=98.6
Q ss_pred ceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHH
Q 004623 516 TRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAG 595 (741)
Q Consensus 516 ~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa 595 (741)
.++.++.-.+.+.|..+.|+.-..-++... ...-++..+..++-+.+.+
T Consensus 86 y~~iivmP~~~S~er~~~l~a~GAevi~t~----~~~g~~~~a~~~a~el~~~--------------------------- 134 (300)
T COG0031 86 YRLIIVMPETMSQERRKLLRALGAEVILTP----GAPGNMKGAIERAKELAAE--------------------------- 134 (300)
T ss_pred CcEEEEeCCCCCHHHHHHHHHcCCEEEEcC----CCCCchHHHHHHHHHHHHh---------------------------
Confidence 467777777777777777777776666633 1222344443333333332
Q ss_pred HHHHHHhhhcCCC-eEEe---eCCCCChhhhhHHHHHHHHHhhcccCcceeecCCCCccccccHHHHHHHHHHHhcCCCC
Q 004623 596 TNVGALLVDGLGD-GLLL---EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG 671 (741)
Q Consensus 596 ~~iG~LL~DGiGD-tIrv---sl~~~~~~ei~~~~~~ILQa~rlR~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkg 671 (741)
..| .++. +++.+|..-...++.+|.|.++-+ =.-||++.+=|=| +-.+.+.+|++-.+++=
T Consensus 135 ----------~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~--~d~fVagvGTGGT---itGvar~Lk~~~p~i~i 199 (300)
T COG0031 135 ----------IPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGK--VDAFVAGVGTGGT---ITGVARYLKERNPNVRI 199 (300)
T ss_pred ----------CCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCC--CCEEEEeCCcchh---HHHHHHHHHhhCCCcEE
Confidence 222 2222 234466666667889999997766 2346675555554 33555666665554442
Q ss_pred cEEEEeeeeecCCCCCCCCceeeecCCCceeE--eee--cceeeeecCChhHHHHHHHHHHHhccccCC
Q 004623 672 VSIAIMGCIVNGPGEMADADFGYVGGAPGKID--LYV--GKTVVKRGIAMEQATDALIQLIKDHGRWAE 736 (741)
Q Consensus 672 vkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~--LY~--gke~V~r~Ipeeeavd~Li~lIk~~g~W~d 736 (741)
+-+=-.|+++.+.|+ ...=+-|=+.+.+. +.. =.+++. |+.++|+....+|.+++|.-+-
T Consensus 200 v~vdP~~S~~~~~G~---g~~~i~GIG~~~ip~~~~~~~iD~v~~--V~d~~A~~~~r~La~~eGilvG 263 (300)
T COG0031 200 VAVDPEGSVLLSGGE---GPHKIEGIGAGFVPENLDLDLIDEVIR--VSDEEAIATARRLAREEGLLVG 263 (300)
T ss_pred EEECCCCCcccCCCC---CCcccCCCCCCcCCcccccccCceEEE--ECHHHHHHHHHHHHHHhCeeec
Confidence 333346777777766 22223332333332 111 345555 9999999999999999987543
No 343
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=47.14 E-value=79 Score=32.26 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=51.2
Q ss_pred CCceEEEeccCCC-CCCHHHHHHHHHHHHHcCCCEEEEe----cCCHHH-HHHHHHHHHhhccCCcccceeeccCCCHHH
Q 004623 101 EHPIRVQTMTTND-TKDVAGTVEEVMRIADQGADLVRIT----VQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSV 174 (741)
Q Consensus 101 ~~PI~VQSMt~t~-T~Dv~atv~Qi~~L~~aGceiVRva----vp~~~~-A~al~~I~~~L~~~~~~iPLVADIHF~~~l 174 (741)
+-++.+.-|+.+. ..+.+.-.+.++++.++|++.|++. +-++++ .+-+..+++. --++|+-.=.|=|+-+
T Consensus 128 G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~----~~~~~~~~H~Hn~~gl 203 (265)
T cd03174 128 GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA----LPDVPLGLHTHNTLGL 203 (265)
T ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh----CCCCeEEEEeCCCCCh
Confidence 4577888876665 4788888899999999999999986 222333 3444455553 3338888777778888
Q ss_pred HHH
Q 004623 175 ALR 177 (741)
Q Consensus 175 Al~ 177 (741)
|++
T Consensus 204 a~a 206 (265)
T cd03174 204 AVA 206 (265)
T ss_pred HHH
Confidence 773
No 344
>PLN02428 lipoic acid synthase
Probab=47.09 E-value=4.7e+02 Score=29.57 Aligned_cols=157 Identities=17% Similarity=0.113 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----HHHHHHHHHHHHhhccCC----cccceeeccCCCHHHHHHHhhh-cCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG-----KREADACFEIKNSLVQKN----YNIPLVADIHFAPSVALRVAEC-FDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~-----~~~A~al~~I~~~L~~~~----~~iPLVADIHF~~~lAl~a~~~-vdk 184 (741)
.|.+.-++.+.++.+.|..-|=|+..+ ...+..+.++.+.|++.. +.+ |+.|..-+..++..-.++ ++-
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~-L~pdf~~d~elL~~L~eAG~d~ 208 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEA-LVPDFRGDLGAVETVATSGLDV 208 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEE-eCccccCCHHHHHHHHHcCCCE
Confidence 456666677777888899877666442 234445555555555433 222 344655565544433343 544
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHH---hHHHhHHHHHHHHHhc--CCeEEEeeccCCCcHHHHhhcCCCchHHH
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQ---HIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~ele---~I~e~~~~vv~~ake~--g~~IRIGvN~GSL~~~il~~yg~t~~amV 259 (741)
+ ++|+=. .+.+...+. .=.+...++++.||+. |+.++-|.=-| +|.|.+.+
T Consensus 209 i---~hnlET-----------v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvG---------LGET~Edv- 264 (349)
T PLN02428 209 F---AHNIET-----------VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLG---------LGETDEEV- 264 (349)
T ss_pred E---ccCccC-----------cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEe---------cCCCHHHH-
Confidence 3 344421 112222221 1124466788888998 88887776333 35666544
Q ss_pred HHHHHHHHHHHHCCCCce-----------EEEEecCChhHHHHHHHHHHHH
Q 004623 260 ESAFEFARICRKLDFHNF-----------LFSMKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 260 eSAle~~~i~e~~~F~di-----------viS~KaSnv~~~i~Ayrlla~~ 299 (741)
.+.++.++++|++-+ -+|++.-=.++--+.|+.++..
T Consensus 265 ---~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 265 ---VQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred ---HHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHH
Confidence 457788899997544 4455554456667777777766
No 345
>PRK09875 putative hydrolase; Provisional
Probab=46.99 E-value=4.2e+02 Score=28.97 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=116.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC-EEEEecCCH-HHHHHHHHHHHhhccCCcccceeeccCCC-----H---------HH
Q 004623 111 TNDTKDVAGTVEEVMRIADQGAD-LVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFA-----P---------SV 174 (741)
Q Consensus 111 ~t~T~Dv~atv~Qi~~L~~aGce-iVRvavp~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~-----~---------~l 174 (741)
+..-.|+++++++++++.++|.. ||-.|..++ ++++.|++|-++ +.+.+||--=|. | .+
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~-----tgv~Iv~~TG~y~~~~~p~~~~~~~~e~l 101 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRE-----TGINVVACTGYYQDAFFPEHVATRSVQEL 101 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHH-----hCCcEEEcCcCCCCccCCHHHhcCCHHHH
Confidence 33467999999999999999985 788888887 889999999996 889999863222 1 12
Q ss_pred HHHHhh----hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhh
Q 004623 175 ALRVAE----CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (741)
Q Consensus 175 Al~a~~----~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~ 250 (741)
|-.-++ .++.=-|-||-||--- ...-..|++| ++-|+...+++++.|.||=+=+.+|.
T Consensus 102 a~~~i~ei~~Gi~gt~ikaGvIGeiG--~~~~~it~~E--------~kvl~Aaa~a~~~TG~pi~~Ht~~~~-------- 163 (292)
T PRK09875 102 AQEMVDEIEQGIDGTELKAGIIAEIG--SSEGKITPLE--------EKVFIAAALAHNQTGRPISTHTSFST-------- 163 (292)
T ss_pred HHHHHHHHHHhhccCCCcccEEEEEe--cCCCCCCHHH--------HHHHHHHHHHHHHHCCcEEEcCCCcc--------
Confidence 222221 2554456677664311 0000012111 44577788889999999844332221
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCC--CceEEEEecCChhHHHHHHHHHHHHhhcCCCCccc-cccccccCCCCCCchhhH
Q 004623 251 YGDSPRGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL-HLGVTEAGEGEDGRMKSA 327 (741)
Q Consensus 251 yg~t~~amVeSAle~~~i~e~~~F--~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPL-HLGVTEAG~~~~G~IKSa 327 (741)
-+++.++++++.|. ++++|+= .|.......++.++++ |+-.=+ ++|-. --...+ +=.
T Consensus 164 ----------~g~e~l~il~e~Gvd~~rvvi~H--~d~~~d~~~~~~l~~~----G~~l~fD~~g~~-~~~pd~---~r~ 223 (292)
T PRK09875 164 ----------MGLEQLALLQAHGVDLSRVTVGH--CDLKDNLDNILKMIDL----GAYVQFDTIGKN-SYYPDE---KRI 223 (292)
T ss_pred ----------chHHHHHHHHHcCcCcceEEEeC--CCCCCCHHHHHHHHHc----CCEEEeccCCCc-ccCCHH---HHH
Confidence 35677899999999 7777663 3333456677777765 321111 33321 000111 225
Q ss_pred HHHHHHhhcCCCceeEEe
Q 004623 328 IGIGTLLQDGLGDTIRVS 345 (741)
Q Consensus 328 iGIG~LL~~GIGDTIRVS 345 (741)
-.|-.|+..|-+|-|-+|
T Consensus 224 ~~i~~L~~~Gy~drilLS 241 (292)
T PRK09875 224 AMLHALRDRGLLNRVMLS 241 (292)
T ss_pred HHHHHHHhcCCCCeEEEe
Confidence 566677777777777665
No 346
>PRK05481 lipoyl synthase; Provisional
Probab=46.93 E-value=4.1e+02 Score=28.76 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHhhccC--CcccceeeccCCCH--HHHHHHhhh-cCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQK--NYNIPLVADIHFAP--SVALRVAEC-FDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~-----~~A~al~~I~~~L~~~--~~~iPLVADIHF~~--~lAl~a~~~-vdk 184 (741)
.+.+.-++++.++.+.|+.-|-++-++. .....+.++.+.|.+. ++.|-++. -|+.. .......++ ++-
T Consensus 80 ~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~-~~~~~~~e~L~~l~~ag~~i 158 (289)
T PRK05481 80 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLI-PDFRGRMDALLTVLDARPDV 158 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEc-cCCCCCHHHHHHHHhcCcce
Confidence 6789999999999999998888885542 1233455554444432 22232222 13321 222222222 221
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHH-HhHHHhHHHHHHHHHhc--CCeEEEeeccCCCcHHHHhhcCCCchHHHHH
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKEL-QHIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~el-e~I~e~~~~vv~~ake~--g~~IRIGvN~GSL~~~il~~yg~t~~amVeS 261 (741)
+..|. ..+ + +=|..-. ..-.+...++++.+++. |++++-|+=-| +|.|.+..
T Consensus 159 ~~~~~--ets-~----------~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvG---------fGET~ed~--- 213 (289)
T PRK05481 159 FNHNL--ETV-P----------RLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVG---------LGETDEEV--- 213 (289)
T ss_pred eeccc--cCh-H----------HHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEE---------CCCCHHHH---
Confidence 22110 000 0 0000000 00123467789999999 99998776444 25666444
Q ss_pred HHHHHHHHHHCCCCceEE
Q 004623 262 AFEFARICRKLDFHNFLF 279 (741)
Q Consensus 262 Ale~~~i~e~~~F~divi 279 (741)
.++++.+++++|+.+-+
T Consensus 214 -~~tl~~lrel~~d~v~i 230 (289)
T PRK05481 214 -LEVMDDLRAAGVDILTI 230 (289)
T ss_pred -HHHHHHHHhcCCCEEEE
Confidence 46788999999988877
No 347
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=46.91 E-value=1.7e+02 Score=31.71 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhcCCeEEEeeccCCC-cHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHH
Q 004623 219 VFSPLVEKCKKYGRAVRIGTNHGSL-SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 297 (741)
Q Consensus 219 ~~~~vv~~ake~g~~IRIGvN~GSL-~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla 297 (741)
.|.++++.++++|+.+-|=+| |+| ++ +.++.+.+.|++.|.||+.+.+... |..+
T Consensus 69 ~~~~ii~~~~~~g~~~~l~TN-G~ll~~------------------e~~~~L~~~g~~~v~iSldg~~~e~----~d~~- 124 (358)
T TIGR02109 69 DLVELVAHARRLGLYTNLITS-GVGLTE------------------ARLDALADAGLDHVQLSFQGVDEAL----ADRI- 124 (358)
T ss_pred cHHHHHHHHHHcCCeEEEEeC-CccCCH------------------HHHHHHHhCCCCEEEEeCcCCCHHH----HHHh-
Confidence 467899999999988877676 443 22 2456667889999999999987542 2111
Q ss_pred HHhhcCCCCccccccccccCCCCCCchhhHH-HHHHHhhcCCCceeEEecCCCCcccchH
Q 004623 298 AEMYVHGWDYPLHLGVTEAGEGEDGRMKSAI-GIGTLLQDGLGDTIRVSLTEPPEKEIDP 356 (741)
Q Consensus 298 ~~m~~~g~dyPLHLGVTEAG~~~~G~IKSai-GIG~LL~~GIGDTIRVSLT~dP~~EV~v 356 (741)
+ |..|.-+.++ +|-.|..-|+.=+|++-+|..-..|++-
T Consensus 125 -r-------------------g~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~ 164 (358)
T TIGR02109 125 -A-------------------GYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPE 164 (358)
T ss_pred -c-------------------CCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Confidence 1 2223333222 4566777788766777777766666643
No 348
>PLN02591 tryptophan synthase
Probab=46.90 E-value=2.1e+02 Score=30.63 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-----------HHHHH---------HHHHHHhhccCCcccceeeccCCCHH-
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGK-----------READA---------CFEIKNSLVQKNYNIPLVADIHFAPS- 173 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~-----------~~A~a---------l~~I~~~L~~~~~~iPLVADIHF~~~- 173 (741)
-|.+.|++-++.|.++|||++=+-+|-- ..-+| +=++.+++++ ..++|+|-=.-||+-
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~-~~~~p~ilm~Y~N~i~ 91 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAP-QLSCPIVLFTYYNPIL 91 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCEEEEecccHHH
Confidence 4889999999999999999999998843 11122 2234444663 478998755555532
Q ss_pred ------HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 174 ------VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 174 ------lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
....|.++ ++.+=|+.= .+ |...++.++|+++|+..=.=|
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDL-------P~------------------ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDL-------PL------------------EETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCC-------CH------------------HHHHHHHHHHHHcCCeEEEEe
Confidence 22345555 888877621 11 125679999999998764433
No 349
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.64 E-value=79 Score=33.67 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=50.1
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cC---CH-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHH----HH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQ---GK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRva-vp---~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl----~a 178 (741)
+|+.....|.+..++.++++.++|++.|+++ +- ++ +-.+-++.+++. +++||-.=.|=|+-+|+ +|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~l~~H~Hnd~GlA~aN~laA 213 (275)
T cd07937 139 CYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKE-----VGLPIHLHTHDTSGLAVATYLAA 213 (275)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-----CCCeEEEEecCCCChHHHHHHHH
Confidence 5555666788999999999999999999997 11 12 344455555554 45787766666677765 46
Q ss_pred hhh-cCcee
Q 004623 179 AEC-FDKIR 186 (741)
Q Consensus 179 ~~~-vdkiR 186 (741)
+++ ++-|=
T Consensus 214 ~~aGa~~vd 222 (275)
T cd07937 214 AEAGVDIVD 222 (275)
T ss_pred HHhCCCEEE
Confidence 665 55443
No 350
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=46.43 E-value=1.6e+02 Score=31.99 Aligned_cols=152 Identities=18% Similarity=0.294 Sum_probs=98.1
Q ss_pred HHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHH--HHhh-------h-cCceeeCCCCCCc
Q 004623 125 MRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL--RVAE-------C-FDKIRVNPGNFAD 194 (741)
Q Consensus 125 ~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl--~a~~-------~-vdkiRINPGNig~ 194 (741)
+.|+++|||++ +|.++.+--+.+.++.+. .++++=+=.|..+|-.+.- +.++ . |+.|=.-|.+--.
T Consensus 26 k~l~~~GAeL~-fTy~~e~l~krv~~la~~---~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~ 101 (259)
T COG0623 26 KALAEQGAELA-FTYQGERLEKRVEELAEE---LGSDLVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELK 101 (259)
T ss_pred HHHHHcCCEEE-EEeccHHHHHHHHHHHhh---ccCCeEEecCCCCHHHHHHHHHHHHHhhCcccEEEEEeccCChHHhC
Confidence 46899999997 788888666666666664 4455556678888866543 2222 2 5556666766544
Q ss_pred hhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCC-------cHHHHhhcC--CCchHHHHHHHHH
Q 004623 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL-------SDRIMSYYG--DSPRGMVESAFEF 265 (741)
Q Consensus 195 ~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL-------~~~il~~yg--~t~~amVeSAle~ 265 (741)
++ |-+ -|.|.|..-++---=.|..+.+.|+.. =-|.||+ +.|.+-.|. .-++|-.||..++
T Consensus 102 G~--~~d--tsre~f~~a~~IS~YS~~~lak~a~~l------M~~ggSiltLtYlgs~r~vPnYNvMGvAKAaLEasvRy 171 (259)
T COG0623 102 GD--YLD--TSREGFLIAMDISAYSFTALAKAARPL------MNNGGSILTLTYLGSERVVPNYNVMGVAKAALEASVRY 171 (259)
T ss_pred Cc--ccc--cCHHHHHhHhhhhHhhHHHHHHHHHHh------cCCCCcEEEEEeccceeecCCCchhHHHHHHHHHHHHH
Confidence 33 333 345668888776666677777777752 3466776 445555564 2345555555555
Q ss_pred HHHHHHCCCCceEEEEecCChhHHHHH
Q 004623 266 ARICRKLDFHNFLFSMKASNPVVMVQA 292 (741)
Q Consensus 266 ~~i~e~~~F~diviS~KaSnv~~~i~A 292 (741)
+ ..++|=++|.+-.=|.-|-.|..+
T Consensus 172 L--A~dlG~~gIRVNaISAGPIrTLAa 196 (259)
T COG0623 172 L--AADLGKEGIRVNAISAGPIRTLAA 196 (259)
T ss_pred H--HHHhCccCeEEeeecccchHHHHh
Confidence 4 568888899988877777766554
No 351
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.37 E-value=4.2e+02 Score=28.82 Aligned_cols=56 Identities=20% Similarity=0.407 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHH
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lA 175 (741)
+.+...+++.++.+.|..-+.+-+...++.+.+..|++.+ | ++.|..|-+..+...
T Consensus 137 ~~~~~~~~~~~~~~~Gf~~~KiKv~~~~d~~~l~~vr~~~---g-~~~l~lDaN~~~~~~ 192 (354)
T cd03317 137 DVEQLLKQIERYLEEGYKRIKLKIKPGWDVEPLKAVRERF---P-DIPLMADANSAYTLA 192 (354)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEecChHHHHHHHHHHHHHC---C-CCeEEEECCCCCCHH
Confidence 3478899999999999999999885556788888888863 5 789999999877663
No 352
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=46.23 E-value=25 Score=39.02 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCCHHHHH----HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc--ccceee
Q 004623 114 TKDVAGTV----EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY--NIPLVA 166 (741)
Q Consensus 114 T~Dv~atv----~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~--~iPLVA 166 (741)
.-|-++|+ +|....++||||+| .|+.=-=-.+..||+.|.+.|+ ++|+++
T Consensus 133 ~vdND~Tl~~L~k~Avs~A~AGADiV---APSdMMDGrV~aIR~aLD~~G~~~~v~ImS 188 (320)
T cd04824 133 TINNEASVKRLAEVALAYAKAGAHIV---APSDMMDGRVRAIKQALIQAGLGNKVSVMS 188 (320)
T ss_pred cCcCHHHHHHHHHHHHHHHHhCCCEE---ecccccccHHHHHHHHHHHCCCccCCeeee
Confidence 34556665 45566799999998 3433333457889999999999 799986
No 353
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=46.07 E-value=1.4e+02 Score=32.82 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----------HHHHHHHHHHHHhhccCCcccceeeccCCCH--HHHHHHhhh
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG-----------KREADACFEIKNSLVQKNYNIPLVADIHFAP--SVALRVAEC 181 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~-----------~~~A~al~~I~~~L~~~~~~iPLVADIHF~~--~lAl~a~~~ 181 (741)
.+.+...+|+.++.+.|...+.+-+-. .++.+.+..+++. .|-++.|..|-+-.| .-|++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~---~g~~~~l~vDaN~~~~~~~A~~~~~~ 198 (352)
T cd03325 122 DRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREA---VGPDIDIGVDFHGRVSKPMAKDLAKE 198 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHh---hCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 367778899999999999999998732 2456667777664 344689999987544 555555555
Q ss_pred cCce
Q 004623 182 FDKI 185 (741)
Q Consensus 182 vdki 185 (741)
++++
T Consensus 199 l~~~ 202 (352)
T cd03325 199 LEPY 202 (352)
T ss_pred cccc
Confidence 6543
No 354
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=45.96 E-value=60 Score=34.44 Aligned_cols=113 Identities=23% Similarity=0.331 Sum_probs=72.6
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHH
Q 004623 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRV 178 (741)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp-~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a 178 (741)
...|+-|-=|...+ -..|..+++|||+++=|-+- +..-.+.+..||+. |+. |=+=|||.-=+++
T Consensus 60 t~~p~DvHLMV~~p-------~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~----G~k----aGv~lnP~Tp~~~ 124 (220)
T COG0036 60 TDLPLDVHLMVENP-------DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKEL----GVK----AGLVLNPATPLEA 124 (220)
T ss_pred CCCceEEEEecCCH-------HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHc----CCe----EEEEECCCCCHHH
Confidence 36788888887655 56888999999999988776 33445566667763 543 4444777666666
Q ss_pred hhh----cCcee---eCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcH
Q 004623 179 AEC----FDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (741)
Q Consensus 179 ~~~----vdkiR---INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 245 (741)
++. +|.|= +||| +|.. +|-.. -++||+ ++-+..++++ .+.|-|. |+++.
T Consensus 125 i~~~l~~vD~VllMsVnPG-fgGQ--~Fi~~---------~l~Ki~----~lr~~~~~~~-~~~IeVD-GGI~~ 180 (220)
T COG0036 125 LEPVLDDVDLVLLMSVNPG-FGGQ--KFIPE---------VLEKIR----ELRAMIDERL-DILIEVD-GGINL 180 (220)
T ss_pred HHHHHhhCCEEEEEeECCC-Cccc--ccCHH---------HHHHHH----HHHHHhcccC-CeEEEEe-CCcCH
Confidence 663 66665 6998 3432 34422 244444 4555555566 9999995 44543
No 355
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=45.82 E-value=3.3e+02 Score=28.31 Aligned_cols=138 Identities=13% Similarity=0.179 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC-----CHHHHHH-Hhhh-cCce
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-----APSVALR-VAEC-FDKI 185 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF-----~~~lAl~-a~~~-vdki 185 (741)
|..|.+..++ .+.+.|.++.=+-+-+.--..-=.++.+.|++. +.++++|+|| ++..+.+ +.++ ++-+
T Consensus 10 D~~~~~~~l~---~~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~--~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~i 84 (230)
T PRK00230 10 DFPSKEEALA---FLDQLDPAVLFVKVGMELFTAGGPQFVRELKQR--GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMV 84 (230)
T ss_pred CCCCHHHHHH---HHHhcCCcccEEEEcHHHHHhcCHHHHHHHHhc--CCCEEEEeehhhccccHHHHHHHHHHcCCCEE
Confidence 6667775554 455556555445444432221102333334443 4689999999 5544433 4455 7777
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeec-cCCCcHHHHhhcCCCchHHHHHHHH
Q 004623 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFE 264 (741)
Q Consensus 186 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN-~GSL~~~il~~yg~t~~amVeSAle 264 (741)
=+.+ .++ . +.++..++.+++++.+.=+||- -.|++.+-+..-+. ...+-+..+.
T Consensus 85 tvH~--~ag-~---------------------~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~-~~~~~~~v~~ 139 (230)
T PRK00230 85 NVHA--SGG-P---------------------RMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGI-NLSLEEQVLR 139 (230)
T ss_pred EEcc--cCC-H---------------------HHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcC-CCCHHHHHHH
Confidence 7765 222 1 2366677777765334456754 56776544433232 1234556667
Q ss_pred HHHHHHHCCCCceEEE
Q 004623 265 FARICRKLDFHNFLFS 280 (741)
Q Consensus 265 ~~~i~e~~~F~diviS 280 (741)
.++.+.+.|-+=++.|
T Consensus 140 ~a~~a~~~g~dgvv~~ 155 (230)
T PRK00230 140 LAKLAQEAGLDGVVCS 155 (230)
T ss_pred HHHHHHHcCCeEEEeC
Confidence 7788888888777666
No 356
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=45.71 E-value=2e+02 Score=32.62 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=69.9
Q ss_pred cCCCCceEEE--eccCC-CC-CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhhc-cCCcccceee----
Q 004623 98 IGSEHPIRVQ--TMTTN-DT-KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLV-QKNYNIPLVA---- 166 (741)
Q Consensus 98 IGG~~PI~VQ--SMt~t-~T-~Dv~atv~Qi~~L~~aGceiVRvavp--~~~~A~al~~I~~~L~-~~~~~iPLVA---- 166 (741)
.+++-|+.++ |.|+. .+ ...+.-+.-+.+-.+.||+=|=+++. +..+.+.|.++.+--. .+.+.+|+|+
T Consensus 122 ~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~Yp 201 (348)
T PRK09250 122 YAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYL 201 (348)
T ss_pred ccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 4445666666 32222 11 11222223344456679999999865 4555555554443211 2346799997
Q ss_pred ---------ccCCCHHH----HHHHhhh-cCceeeC-CCCCCchhhhcccccc---chHHHHH-HHHhHHHhHHHHHHHH
Q 004623 167 ---------DIHFAPSV----ALRVAEC-FDKIRVN-PGNFADRRAQFEQLEY---TDDEYQK-ELQHIEEVFSPLVEKC 227 (741)
Q Consensus 167 ---------DIHF~~~l----Al~a~~~-vdkiRIN-PGNig~~~k~f~~~~Y---tdeey~~-ele~I~e~~~~vv~~a 227 (741)
|+|.++.+ |-.|++. +|=|-++ ||+... |+..-| .+.+|+. ..+...++|+.+|+.|
T Consensus 202 RG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~----f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac 277 (348)
T PRK09250 202 RNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGG----YKAINFGKTDDRVYSKLTSDHPIDLVRYQVANC 277 (348)
T ss_pred cCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhh----HHHhhcccccccccccccccchHHHHHHHHHhh
Confidence 34545433 3356665 7878887 565433 222211 1112222 2366778888899988
Q ss_pred HhcCCeE
Q 004623 228 KKYGRAV 234 (741)
Q Consensus 228 ke~g~~I 234 (741)
=.-.+|+
T Consensus 278 ~ag~vpV 284 (348)
T PRK09250 278 YMGRRGL 284 (348)
T ss_pred ccCCceE
Confidence 3222454
No 357
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=45.66 E-value=4.4e+02 Score=28.80 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeec
Q 004623 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVAD 167 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVAD 167 (741)
.+.+=++.+.++||. +++|-+..||+.+. +.|++-++++-
T Consensus 42 ~~~~i~~~~~~~G~~--~~~vas~~Ea~~~~-------~aG~~~il~~~ 81 (374)
T cd06812 42 KSLEVARRLLAAGAS--PATVSTLKEAEAFA-------EAGYRDILYAV 81 (374)
T ss_pred CCHHHHHHHHhCCCC--cEEEccHHHHHHHH-------HcCCCeeEEeC
Confidence 344445566678874 67888888887754 24666555543
No 358
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=45.46 E-value=2.2e+02 Score=29.73 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=58.0
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh
Q 004623 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (741)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 181 (741)
.||.+|-+ ..|.++.++|.++|.+.+-. +-|-+|--. +.++.|++ |.++|+++-+ =-=|...-|+.|+++
T Consensus 52 g~vs~qv~----~~~~~~mi~~a~~l~~~~~~-i~iKIP~T~--~Gl~A~~~-L~~~Gi~v~~--T~vfs~~Qa~~Aa~a 121 (213)
T TIGR00875 52 GPVSAETI----SLDAEGMVEEAKELAKLAPN-IVVKIPMTS--EGLKAVKI-LKKEGIKTNV--TLVFSAAQALLAAKA 121 (213)
T ss_pred CcEEEEEe----eCCHHHHHHHHHHHHHhCCC-eEEEeCCCH--HHHHHHHH-HHHCCCceeE--EEecCHHHHHHHHHc
Confidence 48999995 45799999999999999865 667888665 33555554 5666765544 446888999999987
Q ss_pred -cCceeeCCCCC
Q 004623 182 -FDKIRVNPGNF 192 (741)
Q Consensus 182 -vdkiRINPGNi 192 (741)
++=|-..=|=+
T Consensus 122 Ga~yispyvgRi 133 (213)
T TIGR00875 122 GATYVSPFVGRL 133 (213)
T ss_pred CCCEEEeecchH
Confidence 66555544443
No 359
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=45.27 E-value=26 Score=38.91 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=37.2
Q ss_pred CCCCHHHHH----HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-ccceee
Q 004623 113 DTKDVAGTV----EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (741)
Q Consensus 113 ~T~Dv~atv----~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~-~iPLVA 166 (741)
..-|-++|+ +|....++||||+| .|+.=-=--++.||+.|.+.|+ ++|+++
T Consensus 136 g~idND~Tl~~L~~~Al~~A~AGaDiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 191 (323)
T PRK09283 136 GYVDNDETLELLAKQALSQAEAGADIV---APSDMMDGRVGAIREALDEAGFTDVPIMS 191 (323)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCEE---EcccccccHHHHHHHHHHHCCCCCCceee
Confidence 344556665 45566799999997 3443333457899999999999 699986
No 360
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.15 E-value=1.4e+02 Score=30.24 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhcc--CCcccceeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQ--KNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~--~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGN 191 (741)
.|.+..++.+.++.+.|+.+|-++..+..+.+.+..+++.... .+.... +...-+..|++. ++-|= -|.
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtv------l~~d~~~~A~~~gAdgv~--~p~ 92 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTI------LTLEDLEEAIAAGAQFCF--TPH 92 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEE------EcHHHHHHHHHcCCCEEE--CCC
Confidence 4788899999999999999999999998888888888874110 111122 233445555554 54442 122
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
++ .++++.|+.++++.-||+
T Consensus 93 ~~---------------------------~~~~~~~~~~~~~~i~G~ 112 (187)
T PRK07455 93 VD---------------------------PELIEAAVAQDIPIIPGA 112 (187)
T ss_pred CC---------------------------HHHHHHHHHcCCCEEcCc
Confidence 32 347889999999888884
No 361
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=44.60 E-value=4.6e+02 Score=29.63 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQ 140 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp 140 (741)
..++++..+++|+.|.+.|..-+.++-+
T Consensus 162 r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~ 189 (430)
T TIGR01125 162 RSRPIEEILKEAERLVDQGVKEIILIAQ 189 (430)
T ss_pred eecCHHHHHHHHHHHHHCCCcEEEEEeE
Confidence 3568899999999999999977776643
No 362
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=44.55 E-value=12 Score=28.77 Aligned_cols=12 Identities=58% Similarity=1.533 Sum_probs=8.9
Q ss_pred ceeecCCCCccc
Q 004623 640 TEYVSCPSCGRT 651 (741)
Q Consensus 640 te~ISCPsCGRT 651 (741)
.+++.||.|+|.
T Consensus 2 ~~~~~C~nC~R~ 13 (33)
T PF08209_consen 2 SPYVECPNCGRP 13 (33)
T ss_dssp S-EEE-TTTSSE
T ss_pred CCeEECCCCcCC
Confidence 478999999996
No 363
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.31 E-value=1.1e+02 Score=31.99 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecC--C-HHHHHHHHHHHHhhccCCcccceeeccCCCH--HHHHHHhhhcCc
Q 004623 119 GTVEEVMRIADQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIHFAP--SVALRVAECFDK 184 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp--~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~~--~lAl~a~~~vdk 184 (741)
..++++++..+.|...+.+-+- + .++.+.+..|++.+ |-++.|..|-|-.+ .-|+..++.++.
T Consensus 85 ~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~vr~~~---g~~~~l~vDaN~~w~~~~A~~~~~~l~~ 152 (263)
T cd03320 85 AALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALREAL---PADAKLRLDANGGWSLEEALAFLEALAA 152 (263)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCChHHHHHHHHHHHHHc---CCCCeEEEeCCCCCCHHHHHHHHHhhcc
Confidence 5668888888999999998762 2 56788888888853 44688999988555 555555555544
No 364
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=44.22 E-value=28 Score=38.67 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-ccceee
Q 004623 114 TKDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (741)
Q Consensus 114 T~Dv~atv~----Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~-~iPLVA 166 (741)
.-|-++|++ |....++||||+| .|+.=-=--++.||+.|.+.|+ ++|+++
T Consensus 139 ~i~ND~Tl~~L~~~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 193 (322)
T PRK13384 139 EVDNDATVENLVKQSVTAAKAGADML---APSAMMDGQVKAIRQGLDAAGFEHVAILA 193 (322)
T ss_pred cCccHHHHHHHHHHHHHHHHcCCCeE---ecccccccHHHHHHHHHHHCCCCCCceee
Confidence 355666665 5566799999997 3443333457899999999999 699976
No 365
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=44.15 E-value=2.9e+02 Score=30.49 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=52.2
Q ss_pred HHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhcccccc
Q 004623 125 MRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEY 204 (741)
Q Consensus 125 ~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Y 204 (741)
+.|.++||+ +++|-+.+||..|.+ .|++.|++.=--+.+.-...++++ +|.| ++.+.
T Consensus 46 ~~l~~~g~~--~f~Vas~~Ea~~lr~-------~Gi~~~ilvl~~~~~~e~~~~i~~----~i~~-~v~s~--------- 102 (365)
T cd06826 46 PSIIAQNIP--CVGITSNEEARVVRE-------AGFTGKILRVRTATPSEIEDALAY----NIEE-LIGSL--------- 102 (365)
T ss_pred HHHHHCCCC--EEEEccHHHHHHHHh-------cCCCCCEEEEeCCCHHHHHHHHHc----CCEE-EECCH---------
Confidence 356788987 788889999987653 367667654333344433344443 2332 12221
Q ss_pred chHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe--ecc-CCCcHHHHhhcCCCc
Q 004623 205 TDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG--TNH-GSLSDRIMSYYGDSP 255 (741)
Q Consensus 205 tdeey~~ele~I~e~~~~vv~~ake~g~~IRIG--vN~-GSL~~~il~~yg~t~ 255 (741)
+.++.+-+.|+++|.+++|- ||. | |.|+|-.+
T Consensus 103 -------------~~l~~l~~~a~~~~~~~~v~LkvDt~G------m~R~Gi~~ 137 (365)
T cd06826 103 -------------DQAEQIDSLAKRHGKTLPVHLALNSGG------MSRNGLEL 137 (365)
T ss_pred -------------HHHHHHHHHHHHcCCceEEEEEECCCC------CCCCCCCc
Confidence 12455666777777665554 677 6 58889554
No 366
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=43.79 E-value=1.4e+02 Score=33.81 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHH
Q 004623 145 ADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (741)
Q Consensus 145 A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~ 221 (741)
.+.+.+++++ ..++||+.+|=|. ...-+...++ ++|=+++.+...|.-. ...
T Consensus 248 ~~~~~~L~~~---~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit----------------------~~~ 302 (394)
T PRK15440 248 YWGYRELKRN---APAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLT----------------------ELV 302 (394)
T ss_pred HHHHHHHHHh---CCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHH----------------------HHH
Confidence 4445555553 1234788888765 3333444444 5999999999998733 367
Q ss_pred HHHHHHHhcCCeE
Q 004623 222 PLVEKCKKYGRAV 234 (741)
Q Consensus 222 ~vv~~ake~g~~I 234 (741)
++...|..+|+++
T Consensus 303 kia~lA~a~gi~~ 315 (394)
T PRK15440 303 KIAALAKARGQLV 315 (394)
T ss_pred HHHHHHHHcCCee
Confidence 8999999999997
No 367
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=43.74 E-value=59 Score=32.98 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh
Q 004623 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (741)
Q Consensus 219 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 287 (741)
|++++++.||+-|- =|||+ .+=-||.+.|--+.+||+..||+=+-+.+|+-.+.
T Consensus 42 RveEiieFak~mgy-kkiGi--------------AfCiGL~~EA~~~~~iL~~~gFev~sV~CKvg~i~ 95 (157)
T PF08901_consen 42 RVEEIIEFAKRMGY-KKIGI--------------AFCIGLRKEARILAKILEANGFEVYSVCCKVGGID 95 (157)
T ss_pred hHHHHHHHHHHcCC-Ceeee--------------hhhHhHHHHHHHHHHHHHHCCCEEEEEEecCCCcc
Confidence 67789999999884 37776 34468999999999999999999999999988765
No 368
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=43.72 E-value=62 Score=34.78 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHH
Q 004623 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (741)
Q Consensus 144 ~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 222 (741)
..+.|+.+.++|++.|+.+-|--| =++.-...|.+. +|.|=+.-|.|++. |. .+. .+|+++|..
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG~yA~a---~~-----~~~-~~el~~~~~---- 175 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTGPYADA---KT-----EAE-AAELERIAK---- 175 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhhhcC---CC-----cch-HHHHHHHHH----
Confidence 557778888888888888888876 344444455565 99999999999873 21 111 445555544
Q ss_pred HHHHHHhcCCeEEEeeccCC
Q 004623 223 LVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GS 242 (741)
-.+.|++.|+ +||+|-
T Consensus 176 aa~~a~~lGL----~VnAGH 191 (239)
T PRK05265 176 AAKLAASLGL----GVNAGH 191 (239)
T ss_pred HHHHHHHcCC----EEecCC
Confidence 7788888884 778773
No 369
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=43.42 E-value=83 Score=35.30 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=52.9
Q ss_pred cCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHH-HHcCCCEEEEecCCHHHHHHHHHHHHhhccCCccc
Q 004623 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRI-ADQGADLVRITVQGKREADACFEIKNSLVQKNYNI 162 (741)
Q Consensus 84 ~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L-~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~i 162 (741)
.|--.+.+.|+++++|+ ...+.+..++-..+| .++||+-|.+-=-..+-++.++.+.+ ..|
T Consensus 91 ~Rga~~a~vVaDmPfgS------------Y~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~------~GI 152 (332)
T PLN02424 91 ARGANRPLLVGDLPFGS------------YESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVE------AGI 152 (332)
T ss_pred hccCCCCEEEeCCCCCC------------CCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHH------cCC
Confidence 45556777788888773 234678899999999 57999999998443445566666664 568
Q ss_pred ceeeccCCCHHH
Q 004623 163 PLVADIHFAPSV 174 (741)
Q Consensus 163 PLVADIHF~~~l 174 (741)
|+++-|=++|+-
T Consensus 153 PV~gHiGLtPQs 164 (332)
T PLN02424 153 AVMGHVGLTPQA 164 (332)
T ss_pred CEEEeeccccee
Confidence 999987777653
No 370
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=43.19 E-value=1.5e+02 Score=31.46 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCccccee-eccCCCHHHHHHHhhh-cCceeeCCCCCCch
Q 004623 121 VEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLV-ADIHFAPSVALRVAEC-FDKIRVNPGNFADR 195 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~~---~~A~al~~I~~~L~~~~~~iPLV-ADIHF~~~lAl~a~~~-vdkiRINPGNig~~ 195 (741)
++..+..+++||+-+|+-+--. -..+.+..+++. +++|++ =|+=.++.-+.+|.++ +|.|=+.-..+..
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-----v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~- 146 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-----VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDD- 146 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-----cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCH-
Confidence 5667788899999999954322 346777777775 789988 4655566667777776 8888766555422
Q ss_pred hhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 196 ~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
+.++++++.|+++|.-+
T Consensus 147 ----------------------~~l~~li~~a~~lGl~~ 163 (260)
T PRK00278 147 ----------------------EQLKELLDYAHSLGLDV 163 (260)
T ss_pred ----------------------HHHHHHHHHHHHcCCeE
Confidence 13666777887776554
No 371
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.94 E-value=4.3e+02 Score=27.90 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCHH----------HHHHHHHHHHhhccCCcc-cceeeccCCCHHHHHHHhhhcCceeeCC
Q 004623 121 VEEVMRIADQGADLVRITVQGKR----------EADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~~~----------~A~al~~I~~~L~~~~~~-iPLVADIHF~~~lAl~a~~~vdkiRINP 189 (741)
.+.+.++++.||+-+=+-+.+.. .++.+++..+ +.+.. .|+ =+|=.| . ||+
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~i--~~Hapy------------~-iNl 75 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALE---TNKNLSQIV--LVHAPY------------L-INL 75 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHH---HcCCCCcce--eccCCe------------e-eec
Confidence 34577788889999988876665 5555555444 33332 111 123111 1 788
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~ 269 (741)
++--. + -.++-.+.|++.++.|++.|.. .+.+..|+..+. ..+...+.+.+.++.+
T Consensus 76 as~~~-~---------------~r~~sv~~~~~~i~~A~~lga~-~vv~H~G~~~~~-------~~e~~~~~~~~~l~~l 131 (274)
T TIGR00587 76 ASPDE-E---------------KEEKSLDVLDEELKRCELLGIM-LYNFHPGSALKC-------SEEEGLDNLIESLNVV 131 (274)
T ss_pred CCCCH-H---------------HHHHHHHHHHHHHHHHHHcCCC-EEEECCCCCCCC-------CHHHHHHHHHHHHHHH
Confidence 77532 1 1233345678899999999998 789999997521 2234445555555443
Q ss_pred HHCCCCceEEEE
Q 004623 270 RKLDFHNFLFSM 281 (741)
Q Consensus 270 e~~~F~diviS~ 281 (741)
.+... .+.|.+
T Consensus 132 ~~~~~-~v~l~l 142 (274)
T TIGR00587 132 IKETK-IVTILL 142 (274)
T ss_pred HhccC-CCEEEE
Confidence 33222 255555
No 372
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=42.80 E-value=40 Score=35.92 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=42.2
Q ss_pred CCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEecc
Q 004623 524 GDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQ 580 (741)
Q Consensus 524 ~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~ 580 (741)
+...+++++..+..++.++++. ..-...|.+ +|.+.++|+++|++-|++.-.|
T Consensus 141 dvP~e~fve~a~e~k~d~v~~S---alMTttm~~-~~~viE~L~eeGiRd~v~v~vG 193 (227)
T COG5012 141 DVPVEEFVEKAKELKPDLVSMS---ALMTTTMIG-MKDVIELLKEEGIRDKVIVMVG 193 (227)
T ss_pred CCCHHHHHHHHHHcCCcEEech---HHHHHHHHH-HHHHHHHHHHcCCccCeEEeec
Confidence 3445788899999999999876 444455555 9999999999999999988753
No 373
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=42.53 E-value=84 Score=35.75 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=81.0
Q ss_pred EEEceeecCCCCceEE---------EeccC-------------CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHH
Q 004623 91 VMVGNVAIGSEHPIRV---------QTMTT-------------NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADAC 148 (741)
Q Consensus 91 V~VG~V~IGG~~PI~V---------QSMt~-------------t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al 148 (741)
..|..+.+|||.|-.. +.+.. ++...+ |-+.+..|.++||.-|=|.+++..+ +.+
T Consensus 102 ~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~l--t~e~l~~L~~~G~~rvsiGvQS~~~-~vl 178 (453)
T PRK13347 102 RRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTV--TAEMLQALAALGFNRASFGVQDFDP-QVQ 178 (453)
T ss_pred CeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccC--CHHHHHHHHHcCCCEEEECCCCCCH-HHH
Confidence 4678899999988642 11110 122222 4578888899999988888888866 334
Q ss_pred HHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceee---CCC-CCCchhhhccccccchHHHHHHHHhHHHhHHHHH
Q 004623 149 FEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRV---NPG-NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLV 224 (741)
Q Consensus 149 ~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRI---NPG-Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv 224 (741)
+.+.+. ++..-+++|++.+.+.-+ |=. -+|-+.. | .+.|.+.+
T Consensus 179 ~~l~R~---------------~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq-------t-----------~e~~~~tl 225 (453)
T PRK13347 179 KAINRI---------------QPEEMVARAVELLRAAGFESINFDLIYGLPHQ-------T-----------VESFRETL 225 (453)
T ss_pred HHhCCC---------------CCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC-------C-----------HHHHHHHH
Confidence 444431 234555666654332222 110 0121111 1 22355566
Q ss_pred HHHHhcCCeEEEeec------cCCCcHHHHhhcC-CCchHHHHHHHHHHHHHHHCCCCceEEEEec
Q 004623 225 EKCKKYGRAVRIGTN------HGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKA 283 (741)
Q Consensus 225 ~~ake~g~~IRIGvN------~GSL~~~il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~Ka 283 (741)
+.+.+.+.. +|.+- ++...++...+.. ++++...+--..-.+.|++.||..+-+|-=|
T Consensus 226 ~~~~~l~p~-~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~~~~~fa 290 (453)
T PRK13347 226 DKVIALSPD-RIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPIGLDHFA 290 (453)
T ss_pred HHHHhcCCC-EEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEEecccee
Confidence 666666642 44432 1111111111121 2334444444455678889999888777533
No 374
>PLN00191 enolase
Probab=42.11 E-value=77 Score=36.73 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCC-HHHHHHHHHHHHhhccCCcccceeecc--CCCHHHHHHHhhh--cCceeeC
Q 004623 115 KDVAGTVEEVMRIAD-QGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAEC--FDKIRVN 188 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~-aGceiVRvavp~-~~~A~al~~I~~~L~~~~~~iPLVADI--HF~~~lAl~a~~~--vdkiRIN 188 (741)
.+.+..++=...|.+ .+ |+=+-=|= .++-+.+.+++++ ..+||++|= ..+++.+..+++. ++.|-|-
T Consensus 295 ~s~~e~i~~~~~L~~~y~--I~~IEDPl~~~D~eg~~~Lt~~-----~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iK 367 (457)
T PLN00191 295 KSGDELIDLYKEFVSDYP--IVSIEDPFDQDDWEHWAKLTSL-----EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLK 367 (457)
T ss_pred cCHHHHHHHHHHHhhcCC--cEEEECCCCcccHHHHHHHHcc-----CCCcEEccCcccCCHHHHHHHHHhCCCCEEEec
Confidence 566777777777655 34 43333332 2456777777774 789999964 4678888888874 9999999
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEe
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 237 (741)
|..+|.-. ...++++.|+++|+++=||
T Consensus 368 l~qiGGIT----------------------ea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 368 VNQIGTVT----------------------ESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ccccCCHH----------------------HHHHHHHHHHHCCCEEEeC
Confidence 99999844 3577999999999988554
No 375
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=42.02 E-value=13 Score=35.75 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.0
Q ss_pred HHHhhcccCcceeecCCCCccc
Q 004623 630 LQGCRMRNTKTEYVSCPSCGRT 651 (741)
Q Consensus 630 LQa~rlR~~kte~ISCPsCGRT 651 (741)
.=-+|+.++++-.|-||+|||.
T Consensus 57 YfwIGmlStkav~V~CP~C~K~ 78 (114)
T PF11023_consen 57 YFWIGMLSTKAVQVECPNCGKQ 78 (114)
T ss_pred HHHhhhhcccceeeECCCCCCh
Confidence 4457999999999999999994
No 376
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.89 E-value=6.1e+02 Score=29.37 Aligned_cols=73 Identities=14% Similarity=0.283 Sum_probs=44.1
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCC---CceEEEEecCChhHHHHHHHHHHH
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF---HNFLFSMKASNPVVMVQAYRLLVA 298 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F---~diviS~KaSnv~~~i~Ayrlla~ 298 (741)
+++..++.|+ .||-+--=|.++++++.++... -++...+.++.|++.|+ -++++-+=--+...+.+.++.+.+
T Consensus 289 ll~~l~~aG~-~~v~iGiES~~~~~L~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~ 364 (497)
T TIGR02026 289 ILHLYRRAGL-VHISLGTEAAAQATLDHFRKGT--TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLD 364 (497)
T ss_pred HHHHHHHhCC-cEEEEccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5566666775 3444444555677777776211 13455667777888877 356666666666666666665544
No 377
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=41.86 E-value=2e+02 Score=29.53 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccC-----CCHHHHHHHhhhcCceeeC
Q 004623 115 KDVAGTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-----FAPSVALRVAECFDKIRVN 188 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~-aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIH-----F~~~lAl~a~~~vdkiRIN 188 (741)
.+.....+++.+++. ++..|+=|.+.+......+.+..+.+.+.|+.-..+-+++ +++. ..+.+..+|.|=++
T Consensus 12 ~~~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~-~~~~l~~ad~I~~~ 90 (217)
T cd03145 12 YDNRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPE-VVARLRDADGIFFT 90 (217)
T ss_pred cCHHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHH-HHHHHHhCCEEEEe
Confidence 355666777766664 5778887877776666667777777777777533333343 3444 34667789999999
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCC
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL 243 (741)
-||=-. |.+.+.. ..+...+..+-++|.++ +|+.+|+.
T Consensus 91 GG~~~~--------------~~~~l~~--t~l~~~l~~~~~~G~v~-~G~SAGA~ 128 (217)
T cd03145 91 GGDQLR--------------ITSALGG--TPLLDALRKVYRGGVVI-GGTSAGAA 128 (217)
T ss_pred CCcHHH--------------HHHHHcC--ChHHHHHHHHHHcCCEE-EEccHHHH
Confidence 998632 1122211 12344555555678776 89999987
No 378
>PLN02540 methylenetetrahydrofolate reductase
Probab=41.84 E-value=6.9e+02 Score=30.20 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHc-CCC-EEEEecCCHHHHHHHHHHHHhhccCCcc--------cceeec------cCCCHHHHHHH
Q 004623 115 KDVAGTVEEVMRIADQ-GAD-LVRITVQGKREADACFEIKNSLVQKNYN--------IPLVAD------IHFAPSVALRV 178 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~a-Gce-iVRvavp~~~~A~al~~I~~~L~~~~~~--------iPLVAD------IHF~~~lAl~a 178 (741)
...+.|++=...|.+. |.+ +.=+|+-++... +|...-.++.+.|+. -|--.| --|++ |+.-
T Consensus 41 st~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~-~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~--A~dL 117 (565)
T PLN02540 41 STADLTLDIANRMQNMICVETMMHLTCTNMPVE-KIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFAC--ALDL 117 (565)
T ss_pred CcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCccc--HHHH
Q ss_pred hhhcCc-----eeeCCCCC--CchhhhccccccchHHHHHHHHhHHHhH------------------HHHHHHHHhcC--
Q 004623 179 AECFDK-----IRVNPGNF--ADRRAQFEQLEYTDDEYQKELQHIEEVF------------------SPLVEKCKKYG-- 231 (741)
Q Consensus 179 ~~~vdk-----iRINPGNi--g~~~k~f~~~~Ytdeey~~ele~I~e~~------------------~~vv~~ake~g-- 231 (741)
++.+.+ ..|--.-+ |..+..+..-.....+++.+++++++|+ ..+++.|++.|
T Consensus 118 V~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 118 VKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCCC
Q ss_pred CeEEEe---------------eccCCCcHHHHhhc---CCCchH----HHHHHHHHHHHHHHCCCCceEE
Q 004623 232 RAVRIG---------------TNHGSLSDRIMSYY---GDSPRG----MVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 232 ~~IRIG---------------vN~GSL~~~il~~y---g~t~~a----mVeSAle~~~i~e~~~F~divi 279 (741)
+||-.| +-+-++++.+++++ .+.+++ =|+=|.+.++-+.+.|.+-|-|
T Consensus 198 vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~~Gv~GiHf 267 (565)
T PLN02540 198 CPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILAHGIKGLHL 267 (565)
T ss_pred CCEEeeecccCCHHHHHHHHhccCCcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
No 379
>PRK14017 galactonate dehydratase; Provisional
Probab=41.82 E-value=1.7e+02 Score=32.46 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----------HHHHHHHHHHHHhhccCCcccceeeccCCCHH--HHHHHhhh
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQG-----------KREADACFEIKNSLVQKNYNIPLVADIHFAPS--VALRVAEC 181 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~-----------~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~--lAl~a~~~ 181 (741)
.+.+..++|+.++.+.|...+.+-+.. .++.+.+..+++. .|-++.|..|-+-.|. -|++.++.
T Consensus 123 ~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~---~g~~~~l~vDaN~~w~~~~A~~~~~~ 199 (382)
T PRK14017 123 DRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREA---VGPEIGIGVDFHGRVHKPMAKVLAKE 199 (382)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHH---hCCCCeEEEECCCCCCHHHHHHHHHh
Confidence 367888999999999999999987621 3466667777764 3456899999886554 45555555
Q ss_pred cCc
Q 004623 182 FDK 184 (741)
Q Consensus 182 vdk 184 (741)
++.
T Consensus 200 l~~ 202 (382)
T PRK14017 200 LEP 202 (382)
T ss_pred hcc
Confidence 554
No 380
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=41.60 E-value=93 Score=31.46 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHhhccCCcccceeeccC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLVQKNYNIPLVADIH 169 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~a-l~~I~~~L~~~~~~iPLVADIH 169 (741)
|....+-.+...++.+.|++++=|++.+.++.++ +..|++... .+++.|+++|.+
T Consensus 42 ~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~-~~~~fpil~D~~ 97 (203)
T cd03016 42 TTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTG-VEIPFPIIADPD 97 (203)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcC-CCCceeEEECch
Confidence 4444455555666788999999999999876665 445666433 678899999965
No 381
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=41.43 E-value=1e+02 Score=30.12 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCeEEEe--eccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCC
Q 004623 220 FSPLVEKCKKYGRAVRIG--TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIG--vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~ 273 (741)
+..+.+.|++.|.+++|+ ||.|- .+.|+|-+++. +.+.++.+.+.+
T Consensus 93 l~~l~~~~~~~~~~~~v~lrv~~g~----~~~R~G~~~~e----~~~~~~~i~~~~ 140 (211)
T cd06808 93 LEKLEEAALKAGPPARVLLRIDTGD----ENGKFGVRPEE----LKALLERAKELP 140 (211)
T ss_pred HHHHHHHHHHhCCCceEEEEEcCCC----CCCCCCCCHHH----HHHHHHHHHhCC
Confidence 455666666666555555 46664 46889977643 344455555544
No 382
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=41.42 E-value=3.3e+02 Score=28.08 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccc--eeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP--LVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iP--LVADIHF~~~lAl~a~~~-vdkiRINPGN 191 (741)
.|.+..++.+.++.+.|+.++=||..+....+.+..++++ ++.| +=|=-=++..-+..|+++ ++-+ +-|+.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~-----~~~~~~iGaGTV~~~~~~~~a~~aGA~fi-vsp~~ 92 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKA-----LGDRALIGAGTVLSPEQVDRLADAGGRLI-VTPNT 92 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHH-----cCCCcEEeEEecCCHHHHHHHHHcCCCEE-ECCCC
Confidence 4789999999999999999999999999999999999986 5433 112223455666666665 4433 22432
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 238 (741)
= .++++.|+++|.++=+|+
T Consensus 93 ~----------------------------~~v~~~~~~~~~~~~~G~ 111 (206)
T PRK09140 93 D----------------------------PEVIRRAVALGMVVMPGV 111 (206)
T ss_pred C----------------------------HHHHHHHHHCCCcEEccc
Confidence 1 358999999999998886
No 383
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=41.37 E-value=76 Score=37.85 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=52.4
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCC----HHHHHHHHHHHHhhccCCcccceeeccCCCHHHHH----HH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQG----KREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRva-vp~----~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl----~a 178 (741)
|||-.+-.|.+.-++-++++.++||+.|.+. +-+ .+..+-++.+|+. +++||-.-.|-+.-+|+ +|
T Consensus 144 ~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~-----~~~pi~~H~Hnt~Gla~An~laA 218 (592)
T PRK09282 144 SYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEE-----VDLPVQLHSHCTSGLAPMTYLKA 218 (592)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHh-----CCCeEEEEEcCCCCcHHHHHHHH
Confidence 5555445688999999999999999998887 222 2344445555554 56898887787777766 56
Q ss_pred hhh-cCcee--eCC
Q 004623 179 AEC-FDKIR--VNP 189 (741)
Q Consensus 179 ~~~-vdkiR--INP 189 (741)
+++ ++-|= |||
T Consensus 219 v~aGad~vD~ai~g 232 (592)
T PRK09282 219 VEAGVDIIDTAISP 232 (592)
T ss_pred HHhCCCEEEeeccc
Confidence 665 65443 454
No 384
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=41.32 E-value=2.2e+02 Score=30.92 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=40.9
Q ss_pred CcccceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE
Q 004623 159 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (741)
Q Consensus 159 ~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 235 (741)
.+++||.+|=.+ ++.-+..+++ +++-|.|-|+..|+ +.++.+.|+.+|+++=
T Consensus 215 ~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG-------------------------i~~~~~~a~~~gi~~~ 269 (320)
T PRK02714 215 DYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS-------------------------PSRLRQFCQQHPLDAV 269 (320)
T ss_pred hCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC-------------------------HHHHHHHHHHhCCCEE
Confidence 378999999764 3444444444 47779999999987 2345577999999998
Q ss_pred Eeec
Q 004623 236 IGTN 239 (741)
Q Consensus 236 IGvN 239 (741)
+|-.
T Consensus 270 ~~~~ 273 (320)
T PRK02714 270 FSSV 273 (320)
T ss_pred EEec
Confidence 8843
No 385
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=41.31 E-value=3.3e+02 Score=28.73 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=55.1
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~ 177 (741)
+|...|+.+|... .|.+..++|-++|.+.+-. |=|-+|--. +.++.|++ |.++|+++-+ =-=|...-|+.
T Consensus 50 ~~~~~~v~~qv~~----~d~e~mi~eA~~l~~~~~n-v~IKIP~T~--~Gl~Ai~~-L~~~GI~vn~--T~vfs~~Qa~~ 119 (220)
T PRK12655 50 IGGEGILFAQTMS----RDAQGMVEEAKRLRNAIPG-IVVKIPVTA--EGLAAIKK-LKKEGIPTLG--TAVYSAAQGLL 119 (220)
T ss_pred hCCCCCEEEEEee----CCHHHHHHHHHHHHHhCCC-EEEEeCCCH--HHHHHHHH-HHHCCCceeE--eEecCHHHHHH
Confidence 4556799999863 4899999999999999866 446677555 33555554 5666765544 33688888888
Q ss_pred Hhhh-cCce
Q 004623 178 VAEC-FDKI 185 (741)
Q Consensus 178 a~~~-vdki 185 (741)
|+++ ++=|
T Consensus 120 Aa~aGa~yI 128 (220)
T PRK12655 120 AALAGAKYV 128 (220)
T ss_pred HHHcCCeEE
Confidence 8886 5544
No 386
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=41.08 E-value=5.5e+02 Score=30.55 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCHHHHHHHH-HHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh----cCcee-eC
Q 004623 115 KDVAGTVEEV-MRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC----FDKIR-VN 188 (741)
Q Consensus 115 ~Dv~atv~Qi-~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~----vdkiR-IN 188 (741)
...+..++.+ +++..-|||+| |+ .--.-..|++. .++|+| ||+.+.-=-|.|+.. -.||= |.
T Consensus 47 ~~~~~~v~~~~~~~~~~~~dvi-Is-----rG~ta~~i~~~-----~~iPVv-~i~~s~~Dil~al~~a~~~~~~iavv~ 114 (538)
T PRK15424 47 LGFEKAVTYIRKRLATERCDAI-IA-----AGSNGAYLKSR-----LSVPVI-LIKPSGFDVMQALARARKLTSSIGVVT 114 (538)
T ss_pred hhHHHHHHHHHHHHhhCCCcEE-EE-----CchHHHHHHhh-----CCCCEE-EecCCHhHHHHHHHHHHhcCCcEEEEe
Confidence 4568889999 55777799987 33 22333456664 779965 788764444444433 22222 33
Q ss_pred CCCCCchhhhccc--------cccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC
Q 004623 189 PGNFADRRAQFEQ--------LEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (741)
Q Consensus 189 PGNig~~~k~f~~--------~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg 252 (741)
=.|+-..-+.|.. ..|.+ .+.....|+.+|+.|+-+=||- .+--++..++|
T Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~~~~----------~~e~~~~v~~lk~~G~~~vvG~---~~~~~~A~~~g 173 (538)
T PRK15424 115 YQETIPALVAFQKTFNLRIEQRSYVT----------EEDARGQINELKANGIEAVVGA---GLITDLAEEAG 173 (538)
T ss_pred cCcccHHHHHHHHHhCCceEEEEecC----------HHHHHHHHHHHHHCCCCEEEcC---chHHHHHHHhC
Confidence 3444332222211 11111 2346778899999998887763 45577777777
No 387
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=41.02 E-value=45 Score=34.73 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-----CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 004623 119 GTVEEVMRIADQGADLVRITVQ-----GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp-----~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNi 192 (741)
-|+.|....++|||++|-.=+. +....+.+++|.+-+++.+++..++|=--=++.-+++++.. +|-+=|-|--+
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl 189 (213)
T TIGR00875 110 FSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVM 189 (213)
T ss_pred cCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 4689999999999999855544 44557788899998888999999888877788888888886 99999988776
No 388
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=40.74 E-value=19 Score=37.62 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=14.2
Q ss_pred cceeecCCCCccccccHHHHHHH
Q 004623 639 KTEYVSCPSCGRTLFDLQEISAE 661 (741)
Q Consensus 639 kte~ISCPsCGRTlfDLq~~~~~ 661 (741)
.-.|+.||+|| .+=-++++++.
T Consensus 3 ~~iy~~Cp~Cg-~eev~hEVik~ 24 (201)
T COG1326 3 EEIYIECPSCG-SEEVSHEVIKE 24 (201)
T ss_pred ceEEEECCCCC-cchhhHHHHHh
Confidence 34899999999 33324555543
No 389
>PRK15000 peroxidase; Provisional
Probab=40.67 E-value=64 Score=32.84 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=45.4
Q ss_pred CCceEEEeccC--CC--CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH-HHHhhccCCcccceeeccCC
Q 004623 101 EHPIRVQTMTT--ND--TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFE-IKNSLVQKNYNIPLVADIHF 170 (741)
Q Consensus 101 ~~PI~VQSMt~--t~--T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~-I~~~L~~~~~~iPLVADIHF 170 (741)
+.++.+=+-.. |. +..+.+-.+-..++.+.||+++-|++.+....++..+ +++..--.+++.|+++|-.-
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~ 108 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKR 108 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCc
Confidence 35666655543 22 3444455556667788999999999999877666543 45432112468999999653
No 390
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=40.64 E-value=5.4e+02 Score=28.36 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHH-HcCCCEEEEecC--C-HHHHHHHHHHHHhhccCCcccceeeccCCC--HHHHHHHhhhcCce
Q 004623 116 DVAGTVEEVMRIA-DQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAECFDKI 185 (741)
Q Consensus 116 Dv~atv~Qi~~L~-~aGceiVRvavp--~-~~~A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~vdki 185 (741)
+.+..++|+.+.. +.|..-+.+-+- + .++.+-+..+++.+ |-++.|..|-|-. +.-|++.++.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~~re~~---g~~~~l~~DaN~~~~~~~A~~~~~~l~~~ 213 (368)
T TIGR02534 141 DTDRDIAEAEERIEEKRHRSFKLKIGARDPADDVAHVVAIAKAL---GDRASVRVDVNAAWDERTALHYLPQLADA 213 (368)
T ss_pred CHHHHHHHHHHHHHhcCcceEEEEeCCCCcHHHHHHHHHHHHhc---CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3444567777765 479999998762 3 35688888888863 4568899998854 45555555556654
No 391
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=40.62 E-value=2.5e+02 Score=28.81 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCC-cccceeeccCCCH-HHHHHHhhhcCceeeCCCCCCchh
Q 004623 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKN-YNIPLVADIHFAP-SVALRVAECFDKIRVNPGNFADRR 196 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~-~~iPLVADIHF~~-~lAl~a~~~vdkiRINPGNig~~~ 196 (741)
..+.+|.+..++||+. ++|...++|.. +. ..|++.| +..|++. ++.+ +....+.++ .+.|- +.+
T Consensus 36 hG~~~v~~~~~~G~~~--fgva~~~Ea~~--k~-~~Lr~~g~~~~~~lg--~~~~~~~~~~~~~~----~~~~~-I~s-- 101 (224)
T cd06824 36 KPADAIREAYAAGQRH--FGENYVQEALE--KI-EALRDLQDIEWHFIG--PIQSNKTKLIAENF----DWVHS-VDR-- 101 (224)
T ss_pred CCHHHHHHHHHcCCcc--cCcChHHHHHH--HH-HHhccCCCeeEEEEc--CchhhhHHHHHhhC----CEEEe-cCC--
Confidence 4456666666899985 78888887753 11 1344443 4445444 3444 323222222 22221 111
Q ss_pred hhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE--eeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCC-
Q 004623 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI--GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD- 273 (741)
Q Consensus 197 k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI--GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~- 273 (741)
.+ .++.+-+.|++.|.++.| =+|.|.= |.|+|-+|+. +.+.++.+.++.
T Consensus 102 ----------~~----------~~~~l~~~a~~~g~~~~v~l~id~~~G----m~R~Gi~~~~----~~~~~~~i~~~~~ 153 (224)
T cd06824 102 ----------LK----------IAKRLNDQRPAGLPPLNVCIQVNISGE----DSKSGVAPED----AAELAEAISQLPN 153 (224)
T ss_pred ----------HH----------HHHHHHHHHHhcCCCCcEEEEEEcCCC----CCCCCCCHHH----HHHHHHHHhcCCC
Confidence 11 244455667777765555 6666432 6788866643 344444444421
Q ss_pred CCce-EEEEe--cCChhHHHHHHHHH---HHHhhcCCCCcc-cccccc
Q 004623 274 FHNF-LFSMK--ASNPVVMVQAYRLL---VAEMYVHGWDYP-LHLGVT 314 (741)
Q Consensus 274 F~di-viS~K--aSnv~~~i~Ayrll---a~~m~~~g~dyP-LHLGVT 314 (741)
..=. +.|.= +.|+..-.+.++.+ .+++.+.|...+ +|+|-|
T Consensus 154 l~l~Gl~tH~a~~~~~~~q~~~f~~~~~~~~~l~~~~~~~~~is~gnS 201 (224)
T cd06824 154 LRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMS 201 (224)
T ss_pred CcEEEEEEeCCCCCChHHHHHHHHHHHHHHHHHHhhCCCCCEEeCcCc
Confidence 1100 12221 22344455566555 455555554322 577754
No 392
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=40.58 E-value=1.8e+02 Score=26.78 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhc--CCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh---------
Q 004623 219 VFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV--------- 287 (741)
Q Consensus 219 ~~~~vv~~ake~--g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~--------- 287 (741)
.+.++++.+++. ++.++|-+|...++++ .++.+.+.|+..+.+|+-+.+..
T Consensus 60 ~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~------------------~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~ 121 (204)
T cd01335 60 ELAELLRRLKKELPGFEISIETNGTLLTEE------------------LLKELKELGLDGVGVSLDSGDEEVADKIRGSG 121 (204)
T ss_pred hHHHHHHHHHhhCCCceEEEEcCcccCCHH------------------HHHHHHhCCCceEEEEcccCCHHHHHHHhcCC
Q ss_pred ----HHHHHHHHHHHHhhcCCCCccccccc
Q 004623 288 ----VMVQAYRLLVAEMYVHGWDYPLHLGV 313 (741)
Q Consensus 288 ----~~i~Ayrlla~~m~~~g~dyPLHLGV 313 (741)
..+++...+.+. ..+..+.+
T Consensus 122 ~~~~~~~~~i~~~~~~------~~~~~~~~ 145 (204)
T cd01335 122 ESFKERLEALKELREA------GLGLSTTL 145 (204)
T ss_pred cCHHHHHHHHHHHHHc------CCCceEEE
No 393
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=40.45 E-value=7.1e+02 Score=29.95 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHhhccCCcccceeecc---------CCCHH---
Q 004623 116 DVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLVADI---------HFAPS--- 173 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRva----------vp~~~~A~al~~I~~~L~~~~~~iPLVADI---------HF~~~--- 173 (741)
.++.-+.=+..|.++|.+.+=+. .-+.+..+.++.|++.. -++++.+=. |+.-.
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~----~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAL----PNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhC----CCCEEEEEEccccccccccCchhhHH
Confidence 34455666777889999988774 23456778888888752 235554321 22111
Q ss_pred -HHHHHhhh-cCceeeC-CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhh
Q 004623 174 -VALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (741)
Q Consensus 174 -lAl~a~~~-vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~ 250 (741)
....|+++ +|-+||- |-|= -+++...++.||++|.-++..+.. +.++
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd------------------------~~n~~~~i~~ak~~G~~v~~~i~~-t~~p----- 144 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALND------------------------PRNLQAAIQAAKKHGAHAQGTISY-TTSP----- 144 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCc------------------------HHHHHHHHHHHHHcCCEEEEEEEe-ccCC-----
Confidence 12345566 8888874 2221 024677889999999988876522 1122
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHH-HHHHHHHHHHhhcCCCCccccc
Q 004623 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVM-VQAYRLLVAEMYVHGWDYPLHL 311 (741)
Q Consensus 251 yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~-i~Ayrlla~~m~~~g~dyPLHL 311 (741)
| .+++-+ ++.++-+++.|-+. |++|-+.=..+ -++|+++.+--.+ ++.|+|+
T Consensus 145 ~-~~~~~~----~~~~~~~~~~Gad~--I~i~Dt~G~~~P~~v~~lv~~lk~~--~~~pi~~ 197 (582)
T TIGR01108 145 V-HTLETY----LDLAEELLEMGVDS--ICIKDMAGILTPKAAYELVSALKKR--FGLPVHL 197 (582)
T ss_pred C-CCHHHH----HHHHHHHHHcCCCE--EEECCCCCCcCHHHHHHHHHHHHHh--CCCceEE
Confidence 1 133333 45666677888874 67776643222 2333333332111 4566654
No 394
>PRK07328 histidinol-phosphatase; Provisional
Probab=40.38 E-value=82 Score=33.10 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=49.9
Q ss_pred HHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHHH
Q 004623 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (741)
Q Consensus 217 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrll 296 (741)
.+.+.+++++|+++|+++=| |.++|-+..-+. -| ..+.++++.++|-. |+|+-=|.++...-..+...
T Consensus 176 ~~~~~~il~~~~~~g~~lEi--Nt~~~r~~~~~~---yp------~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a 243 (269)
T PRK07328 176 TELYEEALDVIAAAGLALEV--NTAGLRKPVGEI---YP------SPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEA 243 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEE--EchhhcCCCCCC---CC------CHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHH
Confidence 34567899999999999955 777774431111 12 23678888888875 88888888777665444444
Q ss_pred HHHhhcCCC
Q 004623 297 VAEMYVHGW 305 (741)
Q Consensus 297 a~~m~~~g~ 305 (741)
.+.+.+.|+
T Consensus 244 ~~~l~~~G~ 252 (269)
T PRK07328 244 LALLKEVGY 252 (269)
T ss_pred HHHHHHcCC
Confidence 444333443
No 395
>PRK01362 putative translaldolase; Provisional
Probab=40.38 E-value=58 Score=34.03 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCCEEEE-----ecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 004623 119 GTVEEVMRIADQGADLVRI-----TVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRv-----avp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNi 192 (741)
-++.|....++|||++|-. .-.+..-.+.+++|.+-+++.+++.-++|=--=+..-.++++.. +|.+=|.|--+
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl 189 (214)
T PRK01362 110 FSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVI 189 (214)
T ss_pred cCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 3588999999999999844 44455667788888888888888888777776788888888776 99999998777
Q ss_pred CchhhhccccccchHH---HHHHHH
Q 004623 193 ADRRAQFEQLEYTDDE---YQKELQ 214 (741)
Q Consensus 193 g~~~k~f~~~~Ytdee---y~~ele 214 (741)
- ++-...||++. |.+.++
T Consensus 190 ~----~l~~~p~t~~~~~~F~~dw~ 210 (214)
T PRK01362 190 K----QLFKHPLTDKGLEKFLADWE 210 (214)
T ss_pred H----HHHcCCchHHHHHHHHHHHH
Confidence 2 23344555443 555444
No 396
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=40.37 E-value=70 Score=33.44 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCeEEEeeccCCCcH----HHHhhcC-C-CchHHHHHHHHHHHHHHHCCCCceEE
Q 004623 220 FSPLVEKCKKYGRAVRIGTNHGSLSD----RIMSYYG-D-SPRGMVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIGvN~GSL~~----~il~~yg-~-t~~amVeSAle~~~i~e~~~F~divi 279 (741)
-.+.++.++++|+++.+-+|..+-+. ..++++| + +++.++-|+.--.+.+.+.++.-+++
T Consensus 26 a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~~~~~~~ 91 (257)
T TIGR01458 26 SQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQLRPMLL 91 (257)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcCCCeEEE
Confidence 45678999999999999999988863 3455567 4 67888889888888888887754443
No 397
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=40.36 E-value=3.4e+02 Score=28.29 Aligned_cols=145 Identities=9% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCCEEEEecCC-----HHHHHHHHHHHHhhccCCcccceeeccCCC-HHHHHHHhhh-cCceeeCCCCCC
Q 004623 121 VEEVMRIADQGADLVRITVQG-----KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNFA 193 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~-----~~~A~al~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~-vdkiRINPGNig 193 (741)
++.++.+.+.|++-+=+.=-| ....+.+++|.+. +.+|+.++-... ..-+...++. ++|+=++=..+-
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~-----~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGK-----LDVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHH-----cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 456677888999866554111 1112466666664 679999999987 5555566666 888877666554
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeecc--CCCcHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH--GSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~--GSL~~~il~~yg~t~~amVeSAle~~~i~e~ 271 (741)
+.+ .+.++++...++ +-+++.. |.+ .. .|-+. --.+.+++++.+++
T Consensus 110 ~p~----------------------l~~~i~~~~~~~---i~vsld~~~~~v----~~-~Gw~~--~~~~~~~~~~~l~~ 157 (241)
T PRK14024 110 NPE----------------------WCARVIAEHGDR---VAVGLDVRGHTL----AA-RGWTR--DGGDLWEVLERLDS 157 (241)
T ss_pred CHH----------------------HHHHHHHHhhhh---EEEEEEEeccEe----cc-CCeee--cCccHHHHHHHHHh
Confidence 432 244455554432 2223221 222 11 24111 12467889999999
Q ss_pred CCCCceEEEEec-----CChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 272 LDFHNFLFSMKA-----SNPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 272 ~~F~diviS~Ka-----Snv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
.|+..+++-==. +-+ -.+.++.+.+. .+.|+
T Consensus 158 ~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~-----~~ipv 193 (241)
T PRK14024 158 AGCSRYVVTDVTKDGTLTGP--NLELLREVCAR-----TDAPV 193 (241)
T ss_pred cCCCEEEEEeecCCCCccCC--CHHHHHHHHhh-----CCCCE
Confidence 999887775221 111 25555666665 56665
No 398
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=40.31 E-value=2.8e+02 Score=31.07 Aligned_cols=149 Identities=22% Similarity=0.231 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHHH-HHHHHHhhccCCcccceeeccCCC----------HHHHHHHhhh--c
Q 004623 117 VAGTVEEVMRIADQGADLVRI-TVQGKREADA-CFEIKNSLVQKNYNIPLVADIHFA----------PSVALRVAEC--F 182 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRv-avp~~~~A~a-l~~I~~~L~~~~~~iPLVADIHF~----------~~lAl~a~~~--v 182 (741)
+++..+|+..|.+-|+|++=| |+.|...|++ +..+++.-.++|..+|+++-.-++ +..++..++. .
T Consensus 142 ~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~ 221 (311)
T COG0646 142 VEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGP 221 (311)
T ss_pred HHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCC
Confidence 467899999999999999988 5788877765 556666666799999999864443 3444445543 4
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhh--cCCCchHHHH
Q 004623 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY--YGDSPRGMVE 260 (741)
Q Consensus 183 dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~--yg~t~~amVe 260 (741)
+-|=+|=+ -+. +.+++.++++-+. .+..+=.==|+| |+.-.=++ |-.+|+-|.+
T Consensus 222 ~~vGlNCa---~Gp-----------------~~m~~~l~~ls~~---~~~~vs~~PNAG-LP~~~g~~~~Y~~~p~~~a~ 277 (311)
T COG0646 222 DAVGLNCA---LGP-----------------DEMRPHLRELSRI---ADAFVSVYPNAG-LPNAFGERAVYDLTPEYMAE 277 (311)
T ss_pred cEEeeccc---cCH-----------------HHHHHHHHHHHhc---cCceEEEeCCCC-CCcccCCccccCCCHHHHHH
Confidence 44444432 111 1223333333333 334555555766 55554444 7779999988
Q ss_pred HHHHHHHHHHHCCCCceEEEEecCChhHHHHHHH
Q 004623 261 SAFEFARICRKLDFHNFLFSMKASNPVVMVQAYR 294 (741)
Q Consensus 261 SAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayr 294 (741)
...+|+ +.|+=+|+=-|=-+.| .=|+|.+
T Consensus 278 ~~~~f~----~~g~vnIvGGCCGTTP-eHIraia 306 (311)
T COG0646 278 ALAEFA----EEGGVNIVGGCCGTTP-EHIRAIA 306 (311)
T ss_pred HHHHHH----HhCCceeeccccCCCH-HHHHHHH
Confidence 766655 4677777666555543 3444433
No 399
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=40.23 E-value=5.2e+02 Score=28.14 Aligned_cols=112 Identities=10% Similarity=0.002 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHhhccCCcccceeeccCCCH---HHHHHHhhhcCceeeC
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADIHFAP---SVALRVAECFDKIRVN 188 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~--~~A~al~~I~~~L~~~~~~iPLVADIHF~~---~lAl~a~~~vdkiRIN 188 (741)
.-.++.-++=+..|.++|.+.+=+..|.+ ++.++++.|.++... --++.+.|=.+=.- ..|++|...++.-+|+
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~-~~~~~~~al~r~~~~die~a~~~~~~~~~~~v~ 97 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEEDLI-PDDVTIQVLTQAREDLIERTFEALRGAKKAIVH 97 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCC-CCCCEEEEEcCCChhhHHHHHHHhCCCCCCEEE
Confidence 34567778888999999999999988854 455678888553110 01344445444332 3555543334332332
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCe
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 233 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 233 (741)
=-.=.+.- |. ...+..-.+.+.+++.++|+.||++|..
T Consensus 98 i~~~~Sd~--h~-----~~~~~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 98 LYNATSPL--QR-----RVVFGKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred EEEcCCHH--HH-----HHHhCCCHHHHHHHHHHHHHHHHHhccc
Confidence 11111100 00 1113334566677788899999999864
No 400
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.23 E-value=3.7e+02 Score=30.57 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh--cCceee---C
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC--FDKIRV---N 188 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~--vdkiRI---N 188 (741)
.+.++..+++|+.+.+.|..-|.++-++... . |.+.|. +.+..-.++.++. +..+|+ |
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~---y----------G~d~~~----~~~~~~Ll~~l~~~~i~~ir~~~~~ 228 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNS---Y----------GVDQPG----FPSFAELLRLVGASGIPRVKFTTSH 228 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccc---c----------ccCCCC----cCCHHHHHHHHHhcCCcEEEEccCC
Confidence 4678999999999999998888877433221 0 111110 1111111222221 223444 5
Q ss_pred CCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC---CeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHH
Q 004623 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (741)
Q Consensus 189 PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g---~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~ 265 (741)
|-++- .++++..++.+ .-+-||+-+ .++++|++++-... .+..++.
T Consensus 229 p~~i~---------------------------~ell~~l~~~~~g~~~l~igvQS--gs~~vLk~m~R~~~--~~~~~~~ 277 (440)
T PRK14334 229 PMNFT---------------------------DDVIAAMAETPAVCEYIHLPVQS--GSDRVLRRMAREYR--REKYLER 277 (440)
T ss_pred cccCC---------------------------HHHHHHHHhcCcCCCeEEecccc--CCHHHHHHhCCCCC--HHHHHHH
Confidence 65552 13566666654 235566655 56788888763110 2445556
Q ss_pred HHHHHHCCCC-----ceEEEEecCChhHHHHHHHHHHH
Q 004623 266 ARICRKLDFH-----NFLFSMKASNPVVMVQAYRLLVA 298 (741)
Q Consensus 266 ~~i~e~~~F~-----diviS~KaSnv~~~i~Ayrlla~ 298 (741)
++.+++.+++ |+++-+--=+.....+.++++.+
T Consensus 278 v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~ 315 (440)
T PRK14334 278 IAEIREALPDVVLSTDIIVGFPGETEEDFQETLSLYDE 315 (440)
T ss_pred HHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHh
Confidence 6667777664 55666655555555566665543
No 401
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=40.08 E-value=4.4e+02 Score=27.18 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 004623 122 EEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (741)
Q Consensus 122 ~Qi~~L~~aGceiVRvavp~~~~-------A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~ 194 (741)
..+.++++.|.+-|-+....... ...+.++++.+.+.| +++.+ |-.| +.|+.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--l~ls~--h~p~----------------~~nl~s 73 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN--IDVSV--HAPY----------------LINLAS 73 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcC--CCEEE--ECCc----------------eecCCC
Confidence 56778888999999877554422 233555555555544 55553 3211 134444
Q ss_pred hhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC
Q 004623 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 195 ~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 242 (741)
.+ .+.+++.+ +.+++.++.|++.|.+ .|.+..|.
T Consensus 74 ~d---------~~~r~~~~----~~l~~~i~~A~~lGa~-~vv~h~g~ 107 (273)
T smart00518 74 PD---------KEKVEKSI----ERLIDEIKRCEELGIK-ALVFHPGS 107 (273)
T ss_pred CC---------HHHHHHHH----HHHHHHHHHHHHcCCC-EEEEcccc
Confidence 22 12233333 4466699999999998 47787775
No 402
>PRK01362 putative translaldolase; Provisional
Probab=40.06 E-value=2.6e+02 Score=29.29 Aligned_cols=108 Identities=18% Similarity=0.271 Sum_probs=70.9
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh
Q 004623 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (741)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 181 (741)
.||.+|-. -.|.++.++|.++|.+.+-. +=|-+|--.+ .++.|++ |.++|+++.+=+ =|...-|+.|+++
T Consensus 52 g~vs~qv~----~~d~~~m~~~a~~l~~~~~~-i~iKIP~T~~--G~~a~~~-L~~~Gi~v~~T~--vfs~~Qa~~Aa~a 121 (214)
T PRK01362 52 GPVSAEVI----ALDAEGMIKEGRELAKIAPN-VVVKIPMTPE--GLKAVKA-LSKEGIKTNVTL--IFSANQALLAAKA 121 (214)
T ss_pred CCEEEEEe----eCCHHHHHHHHHHHHHhCCC-EEEEeCCCHH--HHHHHHH-HHHCCCceEEee--ecCHHHHHHHHhc
Confidence 58999975 57899999999999999865 4466776553 3555554 566676665544 6888999999987
Q ss_pred -cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 182 -vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
++=|-+.=|=+.+.. ....+ .++++.+..+.+|..-+|
T Consensus 122 Ga~yispyvgRi~d~g-------------~dg~~----~i~~~~~~~~~~~~~tki 160 (214)
T PRK01362 122 GATYVSPFVGRLDDIG-------------TDGME----LIEDIREIYDNYGFDTEI 160 (214)
T ss_pred CCcEEEeecchHhhcC-------------CCHHH----HHHHHHHHHHHcCCCcEE
Confidence 765555444442211 11222 344566666777755554
No 403
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.95 E-value=5.1e+02 Score=29.76 Aligned_cols=29 Identities=38% Similarity=0.422 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQG 141 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~ 141 (741)
..++++..+++|+.|.+.|..-|.++-++
T Consensus 182 rsr~~e~Il~ei~~l~~~G~keI~l~g~~ 210 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARGAKEITLLGQI 210 (459)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEeeec
Confidence 35688999999999999999888888543
No 404
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=39.81 E-value=75 Score=34.44 Aligned_cols=94 Identities=14% Similarity=0.294 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceee---ccCCCHHHHHHHhhhcCceeeCCCCC
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA---DIHFAPSVALRVAECFDKIRVNPGNF 192 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVA---DIHF~~~lAl~a~~~vdkiRINPGNi 192 (741)
+.+..+++.+++++|||+.+=+-.... +..++|.+. .++|++. ==+-|-.+.. .-|=+=++++..
T Consensus 158 ~a~~~i~~A~a~e~AGA~~ivlE~vp~---~~a~~It~~-----l~iP~iGIGaG~~~dGQvlV----~~D~lG~~~~~~ 225 (263)
T TIGR00222 158 AAKKLLEDALALEEAGAQLLVLECVPV---ELAAKITEA-----LAIPVIGIGAGNVCDGQILV----MHDALGITVGHI 225 (263)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcH---HHHHHHHHh-----CCCCEEeeccCCCCCceeee----HHhhcCCCCCCC
Confidence 467999999999999999998876553 555677775 7799983 1111111110 001111222211
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG 231 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g 231 (741)
-+|- ..|....+.+.+.+...++..|+..
T Consensus 226 ----pkf~------k~y~~~~~~~~~a~~~y~~~V~~g~ 254 (263)
T TIGR00222 226 ----PKFA------KNYLAETETIRAAVRQYMAEVRSGV 254 (263)
T ss_pred ----CCch------HHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 1222 3466666777777777777766543
No 405
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=39.53 E-value=94 Score=33.73 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEe-------cCCHH-HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCC
Q 004623 118 AGTVEEVMRIADQGADLVRIT-------VQGKR-EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRva-------vp~~~-~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINP 189 (741)
+--++-|.+|.+.|-..|--| ||-+. ..+-++.|++- .|+.-|+..----.++.|++|- ++.|-|
T Consensus 40 ~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~---~Gv~yPVLtPNlkGf~~AvaaG--a~Evav-- 112 (316)
T KOG2368|consen 40 EVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKF---PGVSYPVLTPNLKGFEAAVAAG--AEEVAV-- 112 (316)
T ss_pred hHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhcC---CCccccccCcchhhHHHHHhcC--ceeEEe--
Confidence 345889999999999999877 56554 45556666652 4666676543222223333221 444443
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
||.....|..+... --.|.--++|.+++++|+++++++|=
T Consensus 113 --FgaASe~FslkNiN-----ctiees~~rf~~v~kaA~~~ni~vRG 152 (316)
T KOG2368|consen 113 --FGAASEAFSLKNIN-----CTIEESLKRFMEVLKAAQEHNIRVRG 152 (316)
T ss_pred --eehhhhhhhhccCC-----ccHHHHHHHHHHHHHHHHHcCCccce
Confidence 33333334333211 11122234688899999999999993
No 406
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=39.43 E-value=1.7e+02 Score=32.35 Aligned_cols=141 Identities=20% Similarity=0.266 Sum_probs=88.7
Q ss_pred eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----------cCCH--HHHHHHHHHHHhhc
Q 004623 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----------VQGK--READACFEIKNSLV 156 (741)
Q Consensus 89 r~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva----------vp~~--~~A~al~~I~~~L~ 156 (741)
+-|.++++.+|++++.+|= .--..-..-|-.+.-.+.+..+|++++|-- .|+. +.-+-+++.++
T Consensus 31 tivd~~~~~~g~~~~~~vi-AGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~--- 106 (286)
T COG2876 31 TIVDVGDVVIGEGRALRVI-AGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAAD--- 106 (286)
T ss_pred eeeccccceecCCcceEEE-ecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHH---
Confidence 4577788999999743221 111112233444555567789999999964 4554 33444444444
Q ss_pred cCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 157 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 157 ~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
-+.+|+|.-|- |++--..+++++|=|+|--+|+-+ | ++++++-..++||
T Consensus 107 --~~Gl~vvtEvm-~~~~~e~~~~y~DilqvGARNMQN----F----------------------~LLke~G~~~kPv-- 155 (286)
T COG2876 107 --ETGLPVVTEVM-DVRDVEAAAEYADILQVGARNMQN----F----------------------ALLKEVGRQNKPV-- 155 (286)
T ss_pred --HcCCeeEEEec-CHHHHHHHHhhhhHHHhcccchhh----h----------------------HHHHHhcccCCCe--
Confidence 37799998874 566666777889999999999955 2 2777777788887
Q ss_pred eeccCCCcHHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCceEE
Q 004623 237 GTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 237 GvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~divi 279 (741)
| |.| | .|.+..+.+| ++.-+.|=.++++
T Consensus 156 ------L----LKR-g~~aTieEwL~AA----EYI~s~GN~~vIL 185 (286)
T COG2876 156 ------L----LKR-GLSATIEEWLNAA----EYILSHGNGNVIL 185 (286)
T ss_pred ------E----Eec-CccccHHHHHHHH----HHHHhCCCCcEEE
Confidence 3 333 3 3555444443 4445666556554
No 407
>PRK13669 hypothetical protein; Provisional
Probab=39.41 E-value=1.1e+02 Score=27.93 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHHhccc
Q 004623 654 DLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGR 733 (741)
Q Consensus 654 DLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmaDAD~GyvGg~pGki~LY~gke~V~r~Ipeeeavd~Li~lIk~~g~ 733 (741)
|+..-+..+.+.+..-|+++|---||. +|.|-..-+--.|++++.|. +-..||+++.+.+.|+++-.
T Consensus 11 Nl~~G~~~~~~~Le~dP~~dVie~gCl------------s~CG~C~~~~FAlVng~~V~-a~t~eeL~~kI~~~i~e~~~ 77 (78)
T PRK13669 11 NLASGSQAAFEKLEKDPNLDVLEYGCL------------GYCGICSEGLFALVNGEVVE-GETPEELVENIYAHLEENPM 77 (78)
T ss_pred chhhhHHHHHHHHHhCCCceEEEcchh------------hhCcCcccCceEEECCeEee-cCCHHHHHHHHHHHHhhcCC
Confidence 343444555556677799998888996 55554333334677889998 78999999999999998643
Q ss_pred c
Q 004623 734 W 734 (741)
Q Consensus 734 W 734 (741)
|
T Consensus 78 ~ 78 (78)
T PRK13669 78 F 78 (78)
T ss_pred C
Confidence 3
No 408
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=39.31 E-value=79 Score=30.15 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=41.0
Q ss_pred HHhHHHHHHHHHhcCCeE---EEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE
Q 004623 217 EEVFSPLVEKCKKYGRAV---RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 217 ~e~~~~vv~~ake~g~~I---RIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 281 (741)
...+.++.+.++++|+.| =...++.+......+..-. -+.-++...+.+++++.+|-..+++..
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~ 92 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHS 92 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEEC
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecC
Confidence 456778999999999994 2233333322211111111 245677888889999999999988884
No 409
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=39.24 E-value=22 Score=30.36 Aligned_cols=65 Identities=23% Similarity=0.547 Sum_probs=35.3
Q ss_pred cCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecC--CCCCCCCceeeecCCCceeEeeecceeeeec-CChhHH
Q 004623 644 SCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNG--PGEMADADFGYVGGAPGKIDLYVGKTVVKRG-IAMEQA 720 (741)
Q Consensus 644 SCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNG--PGEmaDAD~GyvGg~pGki~LY~gke~V~r~-Ipeeea 720 (741)
+||.|.+ +.+.+++....+ |+++-+ ++. +.++ ..||+.+ .| .++..++++-.| +|..+-
T Consensus 9 ~C~~C~~-------~~~~~~~~~~~~-~i~~ei----~~~~~~~~~--~~ygv~~-vP---alvIng~~~~~G~~p~~~e 70 (76)
T PF13192_consen 9 GCPYCPE-------LVQLLKEAAEEL-GIEVEI----IDIEDFEEI--EKYGVMS-VP---ALVINGKVVFVGRVPSKEE 70 (76)
T ss_dssp SCTTHHH-------HHHHHHHHHHHT-TEEEEE----EETTTHHHH--HHTT-SS-SS---EEEETTEEEEESS--HHHH
T ss_pred CCCCcHH-------HHHHHHHHHHhc-CCeEEE----EEccCHHHH--HHcCCCC-CC---EEEECCEEEEEecCCCHHH
Confidence 4899964 333444444433 355533 332 2233 5678876 36 467777777778 997776
Q ss_pred HHHHHH
Q 004623 721 TDALIQ 726 (741)
Q Consensus 721 vd~Li~ 726 (741)
+.+|++
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 666653
No 410
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=39.20 E-value=1.4e+02 Score=32.88 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCC--CHHHHHHHhhhcCce
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDKI 185 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~vdki 185 (741)
.|.++.++|+.++.+.|...+.+-+ .+.+..+++. .|-++.|..|-|- +..-|+..++.++.+
T Consensus 125 ~~~~~~~~~a~~~~~~Gf~~~KiKv-----~~~v~avre~---~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~ 189 (361)
T cd03322 125 RDIPELLEAVERHLAQGYRAIRVQL-----PKLFEAVREK---FGFEFHLLHDVHHRLTPNQAARFGKDVEPY 189 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeCH-----HHHHHHHHhc---cCCCceEEEECCCCCCHHHHHHHHHHhhhc
Confidence 4678889999999999999999976 5556666653 3457899999874 455566655656554
No 411
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=39.20 E-value=2.5e+02 Score=28.99 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCeEEEe--eccCCCcHHHHhhcCCCchHHHHHHHHHHHHHH-HCCCC
Q 004623 220 FSPLVEKCKKYGRAVRIG--TNHGSLSDRIMSYYGDSPRGMVESAFEFARICR-KLDFH 275 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIG--vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e-~~~F~ 275 (741)
+.++++.+++.++.+ +| +-.||=..+ .+.| ...++.+++.++-+. ++||.
T Consensus 143 ~~~~l~~~~~~~l~l-~GlH~H~gS~~~~-~~~~----~~~~~~~~~~~~~~~~~~g~~ 195 (251)
T PF02784_consen 143 AEEALERAKELGLRL-VGLHFHVGSQILD-AEAF----RQAIERLLDLAEELKEELGFE 195 (251)
T ss_dssp HHHHHHHHHHTTEEE-EEEEE-HCSSBSS-CHHH----HHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhhccceEEE-EEeeeeeccCCcc-hHHH----HHHHHHHHHHHhhhccccccc
Confidence 667889999998222 24 333553211 1111 355677777777665 88876
No 412
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=39.05 E-value=37 Score=37.70 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-ccceee
Q 004623 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~-~iPLVA 166 (741)
++...+|....++||||+| .|+.=-=-.++.||+.|.+.|+ ++|+++
T Consensus 136 l~~L~k~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~Ims 183 (314)
T cd00384 136 LELLAKIAVSHAEAGADIV---APSDMMDGRVAAIREALDEAGFSDVPIMS 183 (314)
T ss_pred HHHHHHHHHHHHHcCCCee---ecccccccHHHHHHHHHHHCCCCCCceee
No 413
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=39.00 E-value=74 Score=36.25 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCeEEEeeccCC-C-cHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChh
Q 004623 219 VFSPLVEKCKKYGRAVRIGTNHGS-L-SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (741)
Q Consensus 219 ~~~~vv~~ake~g~~IRIGvN~GS-L-~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 287 (741)
.+.++++.||++|+++-|+.-+|+ | +++ .++-+.++|.+-+.||+|+.|+.
T Consensus 90 ~l~eLl~~lk~~gi~taI~~TnG~~l~~~e------------------~~~~L~~~gld~v~iSvka~dpe 142 (404)
T TIGR03278 90 ELEELTKGLSDLGLPIHLGYTSGKGFDDPE------------------IAEFLIDNGVREVSFTVFATDPE 142 (404)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCCcccCCHH------------------HHHHHHHcCCCEEEEecccCCHH
Confidence 478899999999999999833444 4 222 34556778889999999999966
No 414
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.95 E-value=4.3e+02 Score=30.92 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=86.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCC
Q 004623 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 110 t~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINP 189 (741)
|..+..|++.-++..+...++|||- +-|..-.-.|.+|++.+.+. +++|+=. . ==|..+.++.+ |-
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADt----iMDLStggdl~~iR~~il~~-s~vpvGT-V-PiYqa~~~~~~---k~---- 134 (431)
T PRK13352 69 TSSDISDIEEELEKAKVAVKYGADT----IMDLSTGGDLDEIRRAIIEA-SPVPVGT-V-PIYQAAVEAAR---KY---- 134 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCHHHHHHHHHHc-CCCCCcC-h-hHHHHHHHHHh---cC----
Confidence 5688999999999999999999993 34444566778888877663 4344300 0 00666555432 11
Q ss_pred CCCCchhhhccccccchHHHHHHHHh-HHH----------hHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC-CCchH
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQH-IEE----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRG 257 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~-I~e----------~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg-~t~~a 257 (741)
|++.+ .|.+++-..+|+ -++ --++.++.+|+.++-+-|=--.||+=-..|...+ ..|
T Consensus 135 ~~~~~---------mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENP-- 203 (431)
T PRK13352 135 GSVVD---------MTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENP-- 203 (431)
T ss_pred CChhh---------CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCc--
Confidence 13222 233444333322 222 1356778888777777666677888666666665 244
Q ss_pred HHHHHHHHHHHHHHCCCCceEEEEe
Q 004623 258 MVESAFEFARICRKLDFHNFLFSMK 282 (741)
Q Consensus 258 mVeSAle~~~i~e~~~F~diviS~K 282 (741)
+-|-==+.++||++ +|+.+|+=
T Consensus 204 lye~fD~lLeI~~~---yDVtlSLG 225 (431)
T PRK13352 204 LYEHFDYLLEILKE---YDVTLSLG 225 (431)
T ss_pred hHHHHHHHHHHHHH---hCeeeecc
Confidence 44444455666666 45688873
No 415
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.70 E-value=1.6e+02 Score=32.16 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhcCC--eEEEeec----cCC-CcHHHHhh---cCC---------CchHHHHHHHHHHHHHHHCCCCceEE
Q 004623 219 VFSPLVEKCKKYGR--AVRIGTN----HGS-LSDRIMSY---YGD---------SPRGMVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 219 ~~~~vv~~ake~g~--~IRIGvN----~GS-L~~~il~~---yg~---------t~~amVeSAle~~~i~e~~~F~divi 279 (741)
++.++++.+++.+. -||||++ .++ +++++++. +|. .+..+.+.+++.++.|.+.|+.-..-
T Consensus 154 ~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q 233 (321)
T TIGR03822 154 RLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQ 233 (321)
T ss_pred HHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEE
Confidence 46678888887653 3799874 333 56655553 342 25777899999999999999843332
Q ss_pred E--EecCChhHHHHHHHHHHHHhhcCCC-CccccccccccC
Q 004623 280 S--MKASNPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAG 317 (741)
Q Consensus 280 S--~KaSnv~~~i~Ayrlla~~m~~~g~-dyPLHLGVTEAG 317 (741)
+ +|- +....+....|.+.+.+.|. .|=||.-.--.|
T Consensus 234 ~vLl~g--vNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g 272 (321)
T TIGR03822 234 SVLLRG--VNDDPETLAALMRAFVECRIKPYYLHHLDLAPG 272 (321)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCC
Confidence 2 332 22333344444444444566 477887544333
No 416
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.52 E-value=2.1e+02 Score=32.23 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCE-EEEecCC--HHHHHHH----------HH----HHHhhccCC----cccceeeccCCCHHHHHHH
Q 004623 120 TVEEVMRIADQGADL-VRITVQG--KREADAC----------FE----IKNSLVQKN----YNIPLVADIHFAPSVALRV 178 (741)
Q Consensus 120 tv~Qi~~L~~aGcei-VRvavp~--~~~A~al----------~~----I~~~L~~~~----~~iPLVADIHF~~~lAl~a 178 (741)
.+..|.+|+++|-++ +.|+..+ .+.-+.+ .+ |++.+.+.| +..|||.++-.+..=|..-
T Consensus 220 l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L 299 (368)
T PRK14456 220 ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKL 299 (368)
T ss_pred ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHH
Confidence 457899999999874 7777544 3322222 22 333333334 4579999988776444443
Q ss_pred hhh----cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC
Q 004623 179 AEC----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 179 ~~~----vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 242 (741)
++. .-+|++=|=|--... +|..-. ++.+.++.+..+++|+++.|.-..|.
T Consensus 300 ~~~l~~~~~~VnlIpyn~~~~~-~~~~ps-------------~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 300 IRFASRFFCKINLIDYNSIVNI-KFEPVC-------------SSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHHhcCCCeeEEeeeccCCCC-CCCCCC-------------HHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 343 234554443322211 233221 23345566777889999999877765
No 417
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.35 E-value=1.4e+02 Score=31.47 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=50.3
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCC---H-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHH-
Q 004623 103 PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQG---K-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL- 176 (741)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva-vp~---~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl- 176 (741)
.|.++.|..+. .|.+.-++-++++.++|++.|+++ +-+ + +-.+-++.|++.+.. .++||-.-.|-|+-+|+
T Consensus 129 ~v~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~l~~H~Hn~~GlA~A 205 (268)
T cd07940 129 DVEFSAEDATR-TDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPN--IKVPISVHCHNDLGLAVA 205 (268)
T ss_pred eEEEeeecCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCC--CceeEEEEecCCcchHHH
Confidence 45566665554 578888888999999999988876 111 2 333445555554210 12888777887888886
Q ss_pred ---HHhhh-cC
Q 004623 177 ---RVAEC-FD 183 (741)
Q Consensus 177 ---~a~~~-vd 183 (741)
+|+++ ++
T Consensus 206 n~laAi~aG~~ 216 (268)
T cd07940 206 NSLAAVEAGAR 216 (268)
T ss_pred HHHHHHHhCCC
Confidence 45554 44
No 418
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=38.23 E-value=3.2e+02 Score=29.97 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=55.3
Q ss_pred CCceEEEeeCCCCCCcc-chhHHHHHHHHHHHh-cCCCCCeEEeccccCCCCCc-chhhHHHHHHHHHhhhcCCCeEEee
Q 004623 537 IDATMILHDLPFNEDKI-GRVQAARRLFEYLSE-NNLNFPVIHHIQFPNGIHRD-DLVIGAGTNVGALLVDGLGDGLLLE 613 (741)
Q Consensus 537 ~~~vvi~l~~~~~s~~~-~~v~~~R~l~~~L~~-~g~~~Pli~hl~vteag~~e-~~~IkSa~~iG~LL~DGiGDtIrvs 613 (741)
..|++|-+. +..-.. ........++..+.+ .....||.+||. ++. --.++-|+.. |+ +.|++.
T Consensus 42 ~sPvIiq~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLD-----Hg~~~e~i~~ai~~------Gf-tSVM~D 107 (285)
T PRK07709 42 KSPVILGVS--EGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLD-----HGSSFEKCKEAIDA------GF-TSVMID 107 (285)
T ss_pred CCCEEEEcC--cchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECC-----CCCCHHHHHHHHHc------CC-CEEEEe
Confidence 346666643 111122 234445555655543 345589999994 222 2455666655 55 889999
Q ss_pred CCCCChhhhhHHHHHHHHHhhcccC
Q 004623 614 APGQDFDFLRDTSFNLLQGCRMRNT 638 (741)
Q Consensus 614 l~~~~~~ei~~~~~~ILQa~rlR~~ 638 (741)
.|..|.++.....+.+.+.+.-+.-
T Consensus 108 gS~lp~eeNi~~Trevv~~Ah~~gv 132 (285)
T PRK07709 108 ASHHPFEENVETTKKVVEYAHARNV 132 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999998888888888887776543
No 419
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=38.11 E-value=1.4e+02 Score=32.34 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhc---C-C-------C----------chHHHHHHHHHHHHHHHCCCCce
Q 004623 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY---G-D-------S----------PRGMVESAFEFARICRKLDFHNF 277 (741)
Q Consensus 219 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~y---g-~-------t----------~~amVeSAle~~~i~e~~~F~di 277 (741)
.+.++++.++++|..+=|=+| |.|-++.+.++ + . . .++-.+.+++.++.+.+.|+. +
T Consensus 88 dl~eiv~~~~~~g~~v~l~TN-G~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~-v 165 (318)
T TIGR03470 88 EIDEIVRGLVARKKFVYLCTN-ALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFR-V 165 (318)
T ss_pred cHHHHHHHHHHcCCeEEEecC-ceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCc-E
Confidence 467789999998877777777 55544333333 2 1 0 124567888888888888884 3
Q ss_pred EEE--E-ecCChhHHHHHHHHHHH
Q 004623 278 LFS--M-KASNPVVMVQAYRLLVA 298 (741)
Q Consensus 278 viS--~-KaSnv~~~i~Ayrlla~ 298 (741)
.++ + ...|...+.+.++++.+
T Consensus 166 ~v~~tv~~~~n~~ei~~~~~~~~~ 189 (318)
T TIGR03470 166 TTNTTLFNDTDPEEVAEFFDYLTD 189 (318)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHH
Confidence 333 2 45677777777776644
No 420
>CHL00194 ycf39 Ycf39; Provisional
Probab=38.10 E-value=5.1e+02 Score=27.40 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=59.6
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccc
Q 004623 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLE 203 (741)
Q Consensus 124 i~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~ 203 (741)
+.+|.+.|.+ ||+.+-+.+.+..+. . .++. .+.+|+. |+.-...|++.+|-| ||-.+..... .
T Consensus 17 v~~Ll~~g~~-V~~l~R~~~~~~~l~---~----~~v~-~v~~Dl~-d~~~l~~al~g~d~V-i~~~~~~~~~-~----- 79 (317)
T CHL00194 17 VRQALDEGYQ-VRCLVRNLRKASFLK---E----WGAE-LVYGDLS-LPETLPPSFKGVTAI-IDASTSRPSD-L----- 79 (317)
T ss_pred HHHHHHCCCe-EEEEEcChHHhhhHh---h----cCCE-EEECCCC-CHHHHHHHHCCCCEE-EECCCCCCCC-c-----
Confidence 4567889987 677776655443222 1 2332 3456776 343334555555533 4432211100 0
Q ss_pred cchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEE
Q 004623 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 204 Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi 279 (741)
+.-++.. .+-...++++|++.|+. |+ |..+|+.. ..|+..|-.-...+. -+++++.|++=.++
T Consensus 80 --~~~~~~~----~~~~~~l~~aa~~~gvk-r~-I~~Ss~~~---~~~~~~~~~~~K~~~--e~~l~~~~l~~til 142 (317)
T CHL00194 80 --YNAKQID----WDGKLALIEAAKAAKIK-RF-IFFSILNA---EQYPYIPLMKLKSDI--EQKLKKSGIPYTIF 142 (317)
T ss_pred --cchhhhh----HHHHHHHHHHHHHcCCC-EE-EEeccccc---cccCCChHHHHHHHH--HHHHHHcCCCeEEE
Confidence 0001111 12245789999999976 55 44555532 134444322111112 22455667654443
No 421
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=37.88 E-value=1.8e+02 Score=32.26 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE----ecCChhHHHHHHHHHH
Q 004623 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLV 297 (741)
Q Consensus 223 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~i~Ayrlla 297 (741)
.++..|+.|+. ||-+--=|.++++++.+|-. .-++.+.+.++.|.+.||.+|.+.+ .--+.....+..+.+.
T Consensus 105 ~l~~lk~~G~n-risiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~ 180 (353)
T PRK05904 105 QINLLKKNKVN-RISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFIL 180 (353)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 56777788853 66555567889999999842 1245677788889999998665554 3334444444444443
No 422
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=37.77 E-value=1.9e+02 Score=32.51 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=60.2
Q ss_pred HHHcCCCEEEEe----------cCCHHHHHHHHHHHHhhccCCcccceee----ccCCCHHHHHHHhhhcCceee--CCC
Q 004623 127 IADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLVA----DIHFAPSVALRVAECFDKIRV--NPG 190 (741)
Q Consensus 127 L~~aGceiVRva----------vp~~~~A~al~~I~~~L~~~~~~iPLVA----DIHF~~~lAl~a~~~vdkiRI--NPG 190 (741)
..+.|+|+|-+- .|-.++|+-+.++-+. .++|+|- |=.=||.+...|+|.++.=|+ ---
T Consensus 160 Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqA-----VdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 160 VKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQA-----VDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHHh-----cCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 467899999886 4556888888888885 8899984 667778888899998777774 344
Q ss_pred CCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 191 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
|.- --++.++++|++||-.+
T Consensus 235 nld------------------------lDy~~ia~AA~ky~H~V 254 (403)
T COG2069 235 NLD------------------------LDYERIAEAALKYDHVV 254 (403)
T ss_pred ccc------------------------cCHHHHHHHHHhcCceE
Confidence 441 12678999999998766
No 423
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=37.70 E-value=4.5e+02 Score=28.49 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHH
Q 004623 216 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 295 (741)
Q Consensus 216 I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrl 295 (741)
+++.++.++++|+++|+++ |+-.++ + +.++.+.+.||+-+.++. |+..+.++.+.
T Consensus 195 v~~ai~~v~~a~~~~Gk~~--G~~~~~------------~--------~~a~~~~~~G~~~v~~g~---D~~~l~~~~~~ 249 (267)
T PRK10128 195 VQRIIETSIRRIRAAGKAA--GFLAVD------------P--------DMAQKCLAWGANFVAVGV---DTMLYTDALDQ 249 (267)
T ss_pred HHHHHHHHHHHHHHcCCeE--EEcCCC------------H--------HHHHHHHHcCCcEEEECh---HHHHHHHHHHH
Confidence 4567888999999999998 442222 1 344556689998777765 88889898888
Q ss_pred HHHHhh
Q 004623 296 LVAEMY 301 (741)
Q Consensus 296 la~~m~ 301 (741)
..+.+.
T Consensus 250 ~~~~~~ 255 (267)
T PRK10128 250 RLAMFK 255 (267)
T ss_pred HHHHHh
Confidence 887753
No 424
>PRK08185 hypothetical protein; Provisional
Probab=37.62 E-value=5.9e+02 Score=27.94 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC------CHHHHHHHHHHHHhhccCCcccceeeccCCC----HHHHHHHhhh-
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQ------GKREADACFEIKNSLVQKNYNIPLVADIHFA----PSVALRVAEC- 181 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp------~~~~A~al~~I~~~L~~~~~~iPLVADIHF~----~~lAl~a~~~- 181 (741)
++.|.+.+..=|..-++.++-++=-..| +.+-+..+..+.++ +++|++ +|.| +.....|++.
T Consensus 19 N~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~-----~~vPV~--lHLDHg~~~e~i~~ai~~G 91 (283)
T PRK08185 19 NVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKR-----SPVPFV--IHLDHGATIEDVMRAIRCG 91 (283)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHH-----CCCCEE--EECCCCCCHHHHHHHHHcC
Q ss_pred cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHH
Q 004623 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (741)
Q Consensus 182 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeS 261 (741)
++.|=|-=-+.-..+ .|+. .+++++.|+.+|+++--=+ |.+...-...-+...+.+.-+
T Consensus 92 f~SVM~D~S~l~~ee------------------Ni~~-t~~vv~~a~~~gv~vE~El--G~vg~~e~~~~~~~~~~~~t~ 150 (283)
T PRK08185 92 FTSVMIDGSLLPYEE------------------NVAL-TKEVVELAHKVGVSVEGEL--GTIGNTGTSIEGGVSEIIYTD 150 (283)
T ss_pred CCEEEEeCCCCCHHH------------------HHHH-HHHHHHHHHHcCCeEEEEE--eeccCcccccccccccccCCC
Q ss_pred HHHHHHHHHHCCCCceEEEE-------ecC-ChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 262 AFEFARICRKLDFHNFLFSM-------KAS-NPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 262 Ale~~~i~e~~~F~diviS~-------KaS-nv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
.-|-.+..++-|-+-+-+|+ |.+ .+...++--+.+.+. .+.||
T Consensus 151 peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~-----~~iPL 201 (283)
T PRK08185 151 PEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINER-----VDIPL 201 (283)
T ss_pred HHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHh-----hCCCE
No 425
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=37.49 E-value=6.8e+02 Score=28.62 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCH
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGK 142 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~ 142 (741)
..++++..+++|+.|.+.|..-+.++.+|.
T Consensus 166 rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~ 195 (440)
T PRK14862 166 VSRPIGDVLREAERLVKAGVKELLVISQDT 195 (440)
T ss_pred cccCHHHHHHHHHHHHHCCCceEEEEecCh
Confidence 368899999999999999999898887663
No 426
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=37.25 E-value=1e+02 Score=32.91 Aligned_cols=64 Identities=23% Similarity=0.148 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceee
Q 004623 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV 187 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI 187 (741)
|.+|..+..++|+|+|.+---+.+. ++++.+.+++. .++|++|.---+..=+.+.++. +|-|=+
T Consensus 190 t~eea~~A~~~gaD~I~ld~~~~e~---l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 190 TLEEAEEALEAGADIIMLDNMSPEE---LKEAVKLLKGL-PRVLLEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHH---HHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 4788888889999999996655544 44444444433 5799999987776666555555 776644
No 427
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.25 E-value=5.9e+02 Score=27.89 Aligned_cols=158 Identities=13% Similarity=0.227 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHH---HHHHHHHHHhhccCCcccceeeccCCCH----HHHHHHhhh-cCceee
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKRE---ADACFEIKNSLVQKNYNIPLVADIHFAP----SVALRVAEC-FDKIRV 187 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~---A~al~~I~~~L~~~~~~iPLVADIHF~~----~lAl~a~~~-vdkiRI 187 (741)
|.+-.-.-|..-++.++-++==..|+.-. .+.+..+.+.+. +.+++|++ +|.|| .....|++. +..|=|
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A-~~~~VPVa--lHLDH~~~~e~i~~ai~~GftSVM~ 103 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAA-EKASVPVA--LHLDHGTDFEQVMKCIRNGFTSVMI 103 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHH-HHCCCCEE--EECCCCCCHHHHHHHHHcCCCeEEE
Confidence 44444455555566666655444443221 122222222111 24788876 78775 455566664 444433
Q ss_pred CCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE--EeeccCC----CcHHHHhhcCCCchHHHHH
Q 004623 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR--IGTNHGS----LSDRIMSYYGDSPRGMVES 261 (741)
Q Consensus 188 NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR--IGvN~GS----L~~~il~~yg~t~~amVeS 261 (741)
-=- ...|++-++ ..+++|+.|+.+|+++- ||.=.|+ ....--..| .+| +.
T Consensus 104 DgS---------------~lp~eeNi~----~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~-T~p----e~ 159 (284)
T PRK12857 104 DGS---------------KLPLEENIA----LTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAM-TDP----EE 159 (284)
T ss_pred eCC---------------CCCHHHHHH----HHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhc-CCH----HH
Confidence 311 122433333 35669999999999983 3432222 111001113 233 56
Q ss_pred HHHHHHHHHHCCCCceEEEE-------ecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004623 262 AFEFARICRKLDFHNFLFSM-------KASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 262 Ale~~~i~e~~~F~diviS~-------KaSnv~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
|.+|+ ++-|-+-+-+|+ |. .+..-.+--+.+.+. .+.||
T Consensus 160 a~~Fv---~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~i~~~-----~~vPL 205 (284)
T PRK12857 160 ARRFV---EETGVDALAIAIGTAHGPYKG-EPKLDFDRLAKIKEL-----VNIPI 205 (284)
T ss_pred HHHHH---HHHCCCEEeeccCccccccCC-CCcCCHHHHHHHHHH-----hCCCE
Confidence 66666 455788888887 43 556666766777776 56665
No 428
>PLN02433 uroporphyrinogen decarboxylase
Probab=37.16 E-value=4.9e+02 Score=28.51 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=30.8
Q ss_pred cCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE--------ecCChhHHHHHHHHHHHH
Q 004623 240 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM--------KASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 240 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~--------KaSnv~~~i~Ayrlla~~ 299 (741)
.|-++..++ + .|++.+-+.+.+.++.+..-| +++|. +--|+..+++|-|.....
T Consensus 279 ~GNi~p~ll--~-gt~e~i~~~v~~~i~~~~~~g---~Il~~Gc~i~~~tp~eNi~a~v~av~~~~~~ 340 (345)
T PLN02433 279 QGNVDPAVL--F-GSKEAIEKEVRDVVKKAGPQG---HILNLGHGVLVGTPEENVAHFFDVARELRYE 340 (345)
T ss_pred EeCCCchhh--C-CCHHHHHHHHHHHHHHcCCCC---eEEecCCCCCCCCCHHHHHHHHHHHHHhChh
Confidence 445666544 4 477888888888777764444 45553 333444455554443333
No 429
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=37.10 E-value=1.1e+02 Score=34.06 Aligned_cols=77 Identities=5% Similarity=0.094 Sum_probs=55.6
Q ss_pred CCHHH-HHHHHHHHHHcCCCEEEEecCCHH-----HHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh--cCcee
Q 004623 115 KDVAG-TVEEVMRIADQGADLVRITVQGKR-----EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC--FDKIR 186 (741)
Q Consensus 115 ~Dv~a-tv~Qi~~L~~aGceiVRvavp~~~-----~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~--vdkiR 186 (741)
.+.+. +++-++.|+++|+|++=|+.++.. ....-+.||+. +++|+++=--|++..|..+++. +|-|=
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~-----~~~pv~~~G~~~~~~ae~~i~~G~~D~V~ 319 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRAR-----FHGVIIGAGAYTAEKAETLIGKGLIDAVA 319 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHH-----CCCCEEEeCCCCHHHHHHHHHcCCCCEEE
Confidence 46666 688899999999999999987432 11222556664 6789888666899999999984 88877
Q ss_pred eCCCCCCchh
Q 004623 187 VNPGNFADRR 196 (741)
Q Consensus 187 INPGNig~~~ 196 (741)
+-=.=|.|.+
T Consensus 320 ~gR~~iadPd 329 (362)
T PRK10605 320 FGRDYIANPD 329 (362)
T ss_pred ECHHhhhCcc
Confidence 6555555543
No 430
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.77 E-value=1.8e+02 Score=30.40 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=50.2
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHhhccCCcccceeeccCCCHHHHH-
Q 004623 103 PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL- 176 (741)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva----vp~~-~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl- 176 (741)
.|.+..|..+. .|.+.-++.++++.++|++.|+++ +=.+ +-++-+..+++. +++||-.-.|-|+-+|+
T Consensus 125 ~v~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~l~~H~Hn~~Gla~A 198 (259)
T cd07939 125 FVSVGAEDASR-ADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA-----TDLPLEFHAHNDLGLATA 198 (259)
T ss_pred eEEEeeccCCC-CCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCChHHH
Confidence 45566654444 578999999999999999988876 1112 344455556654 56888777777777776
Q ss_pred ---HHhhh-cC
Q 004623 177 ---RVAEC-FD 183 (741)
Q Consensus 177 ---~a~~~-vd 183 (741)
+|+++ ++
T Consensus 199 n~laAi~aG~~ 209 (259)
T cd07939 199 NTLAAVRAGAT 209 (259)
T ss_pred HHHHHHHhCCC
Confidence 45554 54
No 431
>PRK13191 putative peroxiredoxin; Provisional
Probab=36.63 E-value=80 Score=32.58 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHH-HHHHhhccCCcccceeeccC
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACF-EIKNSLVQKNYNIPLVADIH 169 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~-~I~~~L~~~~~~iPLVADIH 169 (741)
-|..+.+-.+...++.+.||+++-|++.+..+-++.. .+++.+ ..+.+.|+++|.+
T Consensus 49 C~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~-~~~i~fPllsD~~ 105 (215)
T PRK13191 49 CTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNL-KVEVPFPIIADPM 105 (215)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhc-CCCCceEEEECCc
Confidence 3445555566667788899999999999987765544 455432 2357899999965
No 432
>PRK02935 hypothetical protein; Provisional
Probab=36.56 E-value=18 Score=34.51 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=17.8
Q ss_pred HhhcccCcceeecCCCCccc
Q 004623 632 GCRMRNTKTEYVSCPSCGRT 651 (741)
Q Consensus 632 a~rlR~~kte~ISCPsCGRT 651 (741)
-.|+.++++-.|-||+|++.
T Consensus 60 wiGmlStkavqV~CP~C~K~ 79 (110)
T PRK02935 60 WIGMLSTKAVQVICPSCEKP 79 (110)
T ss_pred HHhhhcccceeeECCCCCch
Confidence 36999999999999999983
No 433
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=36.48 E-value=33 Score=38.21 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCc-ccceee
Q 004623 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~-~iPLVA 166 (741)
++...+|....++||||+| .|+.=-=--++.||+.|.+.|+ ++|+++
T Consensus 146 l~~Lak~Al~~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 193 (324)
T PF00490_consen 146 LERLAKQALSHAEAGADIV---APSDMMDGRVGAIREALDEAGFSDVPIMS 193 (324)
T ss_dssp HHHHHHHHHHHHHHT-SEE---EE-S--TTHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCee---ccccccCCHHHHHHHHHHhCCCCCccEEe
No 434
>PRK12376 putative translaldolase; Provisional
Probab=36.46 E-value=2e+02 Score=30.75 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=51.9
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-HH-HHHHHHHHhhccCCcccceeeccCCCHHHH
Q 004623 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-EA-DACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (741)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~-~A-~al~~I~~~L~~~~~~iPLVADIHF~~~lA 175 (741)
+.++.||++|-+ ..|.++.++|-++|.+.+-.++ |-+|--. +- +.++.|++ |.++|++ +=+=-=|+..-|
T Consensus 55 ~~~~~~vs~EV~----~~d~~~mv~eA~~l~~~~~nv~-VKIP~T~~~G~~gl~Ai~~-L~~~GI~--vn~T~vfs~~Qa 126 (236)
T PRK12376 55 EIPDAPISFEVF----ADDLETMEKEAEKIASLGENVY-VKIPITNTKGESTIPLIKK-LSADGVK--LNVTAIFTIEQV 126 (236)
T ss_pred hcCCCcEEEEEe----cCCHHHHHHHHHHHHHhCCCeE-EEECCcCccchhHHHHHHH-HHHCCCe--EEEeeecCHHHH
Confidence 334669999984 6789999999999999987755 7778653 21 34444443 4444654 444446888888
Q ss_pred HHHhhh
Q 004623 176 LRVAEC 181 (741)
Q Consensus 176 l~a~~~ 181 (741)
+.|+++
T Consensus 127 ~~a~~A 132 (236)
T PRK12376 127 KEVVDA 132 (236)
T ss_pred HHHHHH
Confidence 766665
No 435
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=36.37 E-value=1.6e+02 Score=32.36 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCceEEEeccCCCCCCHHHH--HHHHHHHHHcCCCE----EEEecCCHHHHHHHHHHHHhhccCCcccceeecc---CCC
Q 004623 101 EHPIRVQTMTTNDTKDVAGT--VEEVMRIADQGADL----VRITVQGKREADACFEIKNSLVQKNYNIPLVADI---HFA 171 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~at--v~Qi~~L~~aGcei----VRvavp~~~~A~al~~I~~~L~~~~~~iPLVADI---HF~ 171 (741)
..||.+=+||-.. +.... -+=.....++|.-+ .|.+.-+.+..+.+..+++. ..++|++|=+ |+.
T Consensus 53 ~~Pi~iaaMtGg~--~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~----~~~~p~i~nl~~~~~~ 126 (333)
T TIGR02151 53 KAPFYINAMTGGS--EEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREE----APNGPLIANIGAPQLV 126 (333)
T ss_pred cCCEEEeCCCCCc--hhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHHHHHHHh----CCCCcEEeecCchhhc
Confidence 7899999997543 22221 12223345566322 45555667777777777774 4679999955 331
Q ss_pred ---HHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHH
Q 004623 172 ---PSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (741)
Q Consensus 172 ---~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 246 (741)
+.-+..+++. .+.+-||-+..-. . ....-++ +|.. +-+.++.+++.. ++||=+=.+ |
T Consensus 127 ~~~~~~~~~~i~~i~adal~i~ln~~q~-~--~~p~g~~--~f~~----~le~i~~i~~~~---~vPVivK~~-g----- 188 (333)
T TIGR02151 127 EGGPEEAQEAIDMIEADALAIHLNVLQE-L--VQPEGDR--NFKG----WLEKIAEICSQL---SVPVIVKEV-G----- 188 (333)
T ss_pred cccHHHHHHHHHHhcCCCEEEcCccccc-c--cCCCCCc--CHHH----HHHHHHHHHHhc---CCCEEEEec-C-----
Confidence 3344455543 4555544321100 0 0001111 1321 222222233322 667622111 1
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEe
Q 004623 247 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282 (741)
Q Consensus 247 il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 282 (741)
+|. ..+.++.|++.|.+-|++|--
T Consensus 189 ----~g~--------~~~~a~~L~~aGvd~I~Vsg~ 212 (333)
T TIGR02151 189 ----FGI--------SKEVAKLLADAGVSAIDVAGA 212 (333)
T ss_pred ----CCC--------CHHHHHHHHHcCCCEEEECCC
Confidence 121 257888999999999999864
No 436
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=36.31 E-value=7e+02 Score=28.45 Aligned_cols=151 Identities=18% Similarity=0.309 Sum_probs=99.9
Q ss_pred HHHcCCCEEEEecCCH-------------HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 004623 127 IADQGADLVRITVQGK-------------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (741)
Q Consensus 127 L~~aGceiVRvavp~~-------------~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig 193 (741)
|..+|...||+-+=.. -+.+..-+|.+|-. .-.+-+.+|+||.-.-| -||
T Consensus 72 LK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk--~~GmKVl~dFHYSDfwa------------DPa--- 134 (403)
T COG3867 72 LKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAK--NLGMKVLLDFHYSDFWA------------DPA--- 134 (403)
T ss_pred HHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHH--hcCcEEEeeccchhhcc------------Chh---
Confidence 6789999999986211 22333335555433 34588999999975544 232
Q ss_pred chhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCe---EEEe--eccCCCcHHHHhhcCCC-----chHHHHHHH
Q 004623 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA---VRIG--TNHGSLSDRIMSYYGDS-----PRGMVESAF 263 (741)
Q Consensus 194 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~---IRIG--vN~GSL~~~il~~yg~t-----~~amVeSAl 263 (741)
|++..+....-.|.+-...+.+--+.++..-|+.|+- +-|| +|.|=|=+ .|.+ -.+|...+.
T Consensus 135 ---kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp-----~Ge~~~f~k~a~L~n~g~ 206 (403)
T COG3867 135 ---KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWP-----DGEGRNFDKMAALLNAGI 206 (403)
T ss_pred ---hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceecc-----CCCCcChHHHHHHHHHHh
Confidence 3334444444457777788888888999999999985 4566 78887733 2322 235555555
Q ss_pred HHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCc
Q 004623 264 EFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDY 307 (741)
Q Consensus 264 e~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dy 307 (741)
+-+| +-+ .+|+|-+--++. ..---||-+++++.+++.||
T Consensus 207 ~avr---ev~-p~ikv~lHla~g-~~n~~y~~~fd~ltk~nvdf 245 (403)
T COG3867 207 RAVR---EVS-PTIKVALHLAEG-ENNSLYRWIFDELTKRNVDF 245 (403)
T ss_pred hhhh---hcC-CCceEEEEecCC-CCCchhhHHHHHHHHcCCCc
Confidence 4444 333 388888888874 46778999999999998775
No 437
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=36.03 E-value=1.8e+02 Score=30.71 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHhhccCCcccceee
Q 004623 112 NDTKDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~aGceiVRvav--p~~~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
..|-+.+.-...+.++.+.|+||+-++| .+.+++..|-++..+..+. .+.|+|+
T Consensus 136 ~~TP~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~-~~~p~i~ 191 (238)
T PRK13575 136 ESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDT-MDCKVVG 191 (238)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhc-cCCCEEE
Confidence 4455666677788899999999999998 5666666665554433322 4466653
No 438
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.99 E-value=1.8e+02 Score=30.58 Aligned_cols=177 Identities=16% Similarity=0.301 Sum_probs=105.0
Q ss_pred cCCCCceEEEeccC---CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceee--------
Q 004623 98 IGSEHPIRVQTMTT---NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA-------- 166 (741)
Q Consensus 98 IGG~~PI~VQSMt~---t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVA-------- 166 (741)
|||+ .+.|++|.. .+..+.+-+-.|+++|.+| |+|=..=.+.+ .-+.++.+.+. +.++++
T Consensus 19 I~gd-~v~V~~l~p~~g~dpH~y~~~p~d~~~l~~A--Dliv~~G~~lE--~~~~k~~~~~~----~~~v~~~~~~~~~~ 89 (264)
T cd01020 19 VGGD-HVEVTSIITNPDVDPHDFEPTPTDAAKVSTA--DIVVYNGGGYD--PWMTKLLADTK----DVIVIAADLDGHDD 89 (264)
T ss_pred HcCC-ceEEEEecCCCCCCcccCCCCHHHHHHHhhC--CEEEEeCCCch--HHHHHHHHhcC----CceEEeeecccccC
Confidence 5554 589999977 6778999999999999976 77655445554 35555555431 123322
Q ss_pred ----ccC--CCHHHHHHHhhh-cCce-eeCCCCCCchhhhccccccc--hHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 167 ----DIH--FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYT--DDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 167 ----DIH--F~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Yt--deey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
|=| .||..|...++. .+++ .+.|-|=. .|. -++|.++|+.+.++++..+..++. +. +
T Consensus 90 ~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP~~~~---------~y~~N~~~~~~~l~~l~~~~~~~~~~~~~--~~--~ 156 (264)
T cd01020 90 KEGDNPHLWYDPETMSKVANALADALVKADPDNKK---------YYQANAKKFVASLKPLAAKIAELSAKYKG--AP--V 156 (264)
T ss_pred CCCCCCceecCHhHHHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--Ce--E
Confidence 323 245666666654 3333 36787631 132 356999999999988888877643 33 5
Q ss_pred eeccCCCcHHHHhhcCCC---chHHHH--------HH---HHHHHHHHHCCCCceEEEEecCChhHHHHHHHHHHHH
Q 004623 237 GTNHGSLSDRIMSYYGDS---PRGMVE--------SA---FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 237 GvN~GSL~~~il~~yg~t---~~amVe--------SA---le~~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~ 299 (741)
=+.|.++ ..+.++||-. +.+.++ |+ .+-++.+++.+-.=|... ..++ ..+++....+|+.
T Consensus 157 v~~H~af-~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~e-~~~~-~k~~~~l~~la~~ 230 (264)
T cd01020 157 AATEPVF-DYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVN-PQQA-SSATTNITGLAKR 230 (264)
T ss_pred EEeCchH-HHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCCEEEeC-CCCC-cHHHHHHHHHHHH
Confidence 5678887 5678888832 322211 11 344555666665533332 2232 2355555556666
No 439
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=35.98 E-value=82 Score=33.25 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH-HcCCCEEEEecCCHHHHHHHHHHHHhhccCCccccee
Q 004623 118 AGTVEEVMRIA-DQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV 165 (741)
Q Consensus 118 ~atv~Qi~~L~-~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLV 165 (741)
+.+.+-+..|. +.||+.+=+++++. .+-++.+++++ +++|+|
T Consensus 47 ~~~~~~~~~L~~~~g~d~ivIaCNTA-~a~~~~~l~~~-----~~iPii 89 (251)
T TIGR00067 47 EYVLELLTFLKERHNIKLLVVACNTA-SALALEDLQRN-----FDFPVV 89 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCchH-HHHHHHHHHHH-----CCCCEE
Confidence 55667778998 99999999999998 55679999986 789986
No 440
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=35.84 E-value=2e+02 Score=28.27 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-HH-HHHHHHHHHHhhccCCcccceeeccC--CCHHHHH
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG-KR-EADACFEIKNSLVQKNYNIPLVADIH--FAPSVAL 176 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~-~~-~A~al~~I~~~L~~~~~~iPLVADIH--F~~~lAl 176 (741)
+.||.+.-|+++.- -.++..+.++|++++=+-... .+ ..+.++.+++ ..++++.+++ +++.-++
T Consensus 53 ~~~i~~~~~v~~~~------~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~------~g~~~~v~~~~~~t~~e~~ 120 (202)
T cd04726 53 DKIIVADLKTADAG------ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKK------YGKEVQVDLIGVEDPEKRA 120 (202)
T ss_pred CCEEEEEEEecccc------HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHH------cCCeEEEEEeCCCCHHHHH
Confidence 56777877777432 136688999999998764332 22 2334444444 4578888744 4566666
Q ss_pred HHhhh-cCceeeCCCC
Q 004623 177 RVAEC-FDKIRVNPGN 191 (741)
Q Consensus 177 ~a~~~-vdkiRINPGN 191 (741)
++... +|-|-++|+-
T Consensus 121 ~~~~~~~d~v~~~~~~ 136 (202)
T cd04726 121 KLLKLGVDIVILHRGI 136 (202)
T ss_pred HHHHCCCCEEEEcCcc
Confidence 67774 9999999863
No 441
>PRK10200 putative racemase; Provisional
Probab=35.79 E-value=74 Score=33.11 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCccccee
Q 004623 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV 165 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLV 165 (741)
.+.-.+.++.|+++||+.+=+++++.-.. +..++++ +++|++
T Consensus 61 ~~~l~~~~~~L~~~g~~~iviaCNTah~~--~~~l~~~-----~~iPii 102 (230)
T PRK10200 61 GDILAEAALGLQRAGAEGIVLCTNTMHKV--ADAIESR-----CSLPFL 102 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCchHHHH--HHHHHHh-----CCCCEe
Confidence 35667788999999999999999999887 5888885 789986
No 442
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.78 E-value=1.9e+02 Score=31.91 Aligned_cols=160 Identities=18% Similarity=0.241 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchh-hhccccccchHHHHHHHHhHHHh
Q 004623 141 GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR-AQFEQLEYTDDEYQKELQHIEEV 219 (741)
Q Consensus 141 ~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~-k~f~~~~Ytdeey~~ele~I~e~ 219 (741)
+.+..++++++.+.+.+.|+. +++=++...+.+...... ...-+-|..+.... ........| .+|++.|.+.
T Consensus 73 ~d~~i~~~~~l~~~vh~~G~~--i~~QL~h~G~~~~~~~~~-~~~~~~ps~~~~~~~~~~~p~~mt----~~eI~~ii~~ 145 (353)
T cd04735 73 DDSDIPGLRKLAQAIKSKGAK--AILQIFHAGRMANPALVP-GGDVVSPSAIAAFRPGAHTPRELT----HEEIEDIIDA 145 (353)
T ss_pred ChhhhHHHHHHHHHHHhCCCe--EEEEecCCCCCCCccccC-CCceecCCCCcccCCCCCCCccCC----HHHHHHHHHH
Confidence 455677777777777777753 455554443332111000 01123344432100 001123344 3456678888
Q ss_pred HHHHHHHHHhcCC-eEEEeeccCCCcHHHHh--------hcCCCchHHHHHHHHHHHHHHH-CC---CCceEEEEecCCh
Q 004623 220 FSPLVEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LD---FHNFLFSMKASNP 286 (741)
Q Consensus 220 ~~~vv~~ake~g~-~IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~-~~---F~diviS~KaSnv 286 (741)
|..=.+.|++.|- .|=|=.-||-|=..+|+ +||.+.+.=..=++|-++-.++ .| -.++.|.+|-|-.
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 8888888888876 55555566665444443 4775555444445555554443 44 2577899988742
Q ss_pred hH-----HHHHHHHHHHHhhcCCCCc
Q 004623 287 VV-----MVQAYRLLVAEMYVHGWDY 307 (741)
Q Consensus 287 ~~-----~i~Ayrlla~~m~~~g~dy 307 (741)
.. +.+-+..+++.+++.|.||
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD~ 251 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLDY 251 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCCE
Confidence 21 1223344555555556655
No 443
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=35.76 E-value=65 Score=34.14 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceee
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVA 166 (741)
.+.+.++++.+++++|||+.|=+..++.+.++ +|.+. .++|+++
T Consensus 153 ~~~~~ai~Ra~ay~~AGAd~i~~e~~~~e~~~---~i~~~-----~~~P~~~ 196 (240)
T cd06556 153 EAGEQLIADALAYAPAGADLIVMECVPVELAK---QITEA-----LAIPLAG 196 (240)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH---HHHHh-----CCCCEEE
Confidence 46889999999999999999999887666655 45554 6799885
No 444
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=35.58 E-value=2.7e+02 Score=31.44 Aligned_cols=117 Identities=18% Similarity=0.325 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 004623 121 VEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRvavp~~-------~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNi 192 (741)
+++++.+.++|+|+|-+. |.. ..-+.++++++. +++|++++.--+..-+.+++++ ++.+=+- .+|
T Consensus 121 ~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~-----~~iPI~a~GGI~~~n~~~~l~aGAdgv~vG-saI 193 (430)
T PRK07028 121 VKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEE-----VSIPIAVAGGLDAETAAKAVAAGADIVIVG-GNI 193 (430)
T ss_pred HHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhh-----CCCcEEEECCCCHHHHHHHHHcCCCEEEEC-hHH
Confidence 566788889999999765 432 223456666653 6799999966666666666665 5544321 111
Q ss_pred CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 193 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAl 263 (741)
|. .+++.+..+++++ .+ +..-+..|---|=.+++++++++..-.-+-|--||
T Consensus 194 ------~~-----~~d~~~~~~~l~~----~i----~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~i~d~l 245 (430)
T PRK07028 194 ------IK-----SADVTEAARKIRE----AI----DSGKPVKIDKFKKSLDEEIREIFMQVSTPNISDAM 245 (430)
T ss_pred ------cC-----CCCHHHHHHHHHH----HH----hccCCccccccccCCCHHHHHHhcCCCCCcHHhhh
Confidence 11 1122222332222 22 34778888888889999999998743323343333
No 445
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=35.23 E-value=73 Score=28.95 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCeEEEeeccCCCcH-HH---HhhcC-C-CchHHHHHHHHHHHHHHHCCC
Q 004623 220 FSPLVEKCKKYGRAVRIGTNHGSLSD-RI---MSYYG-D-SPRGMVESAFEFARICRKLDF 274 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIGvN~GSL~~-~i---l~~yg-~-t~~amVeSAle~~~i~e~~~F 274 (741)
..+.++..+++|+++++=+|.+|.+. .+ |++.| + +++.++-|+.--++++.+..+
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 46789999999999999999999983 33 35566 3 667788888888888887533
No 446
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.05 E-value=1.8e+02 Score=32.67 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH--H-----HHHHHHHHHHhhccCCcccceeec--cC----------------
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGK--R-----EADACFEIKNSLVQKNYNIPLVAD--IH---------------- 169 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~--~-----~A~al~~I~~~L~~~~~~iPLVAD--IH---------------- 169 (741)
.+.+.+++-++.|.++|+|++=++..+. . .......||+. .++|+++= |+
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~-----~~~pv~~~G~i~~~~~~~~~~~~~~~~~ 306 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKL-----TGLPTITVGSVGLDGDFIGAFAGDEGAS 306 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHH-----cCCCEEEECCcccccccccccccccccc
Confidence 4667788888899999999998877521 0 12233456664 45676664 43
Q ss_pred -CCHHHHHHHhhh--cCceeeCCCCCCchh
Q 004623 170 -FAPSVALRVAEC--FDKIRVNPGNFADRR 196 (741)
Q Consensus 170 -F~~~lAl~a~~~--vdkiRINPGNig~~~ 196 (741)
.++..|.++++. +|-|-+-=+=|.+++
T Consensus 307 ~~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 336 (361)
T cd04747 307 PASLDRLLERLERGEFDLVAVGRALLSDPA 336 (361)
T ss_pred cCCHHHHHHHHHCCCCCeehhhHHHHhCcH
Confidence 478889998874 888876555555544
No 447
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=34.91 E-value=6.2e+02 Score=27.41 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred eccCCC-CCCHHHHHHHHHHHHHc-CCC-EEEEecCCHHHHHHHHHHHHhhccCCcc--------ccee------eccCC
Q 004623 108 TMTTND-TKDVAGTVEEVMRIADQ-GAD-LVRITVQGKREADACFEIKNSLVQKNYN--------IPLV------ADIHF 170 (741)
Q Consensus 108 SMt~t~-T~Dv~atv~Qi~~L~~a-Gce-iVRvavp~~~~A~al~~I~~~L~~~~~~--------iPLV------ADIHF 170 (741)
|-|... -.+.+.|++=+..|.+. |-+ +.=+|+-+.... .|...-.++.+.|+. -|-. +.--|
T Consensus 34 svT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~-~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f 112 (281)
T TIGR00677 34 DITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIE-MIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGF 112 (281)
T ss_pred EeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_pred CHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHh------------------HHHHHHHHHhc--
Q 004623 171 APSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEV------------------FSPLVEKCKKY-- 230 (741)
Q Consensus 171 ~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~------------------~~~vv~~ake~-- 230 (741)
++ |..-++.+.+. .+.+|.-+-.-+-+.-..-+..+.+++++++| |..+++.|++.
T Consensus 113 ~~--a~~Li~~i~~~--~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi 188 (281)
T TIGR00677 113 QY--AVDLVKYIRSK--YGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLFYDVDNFLKFVNDCRAIGI 188 (281)
T ss_pred cC--HHHHHHHHHHh--CCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccceecHHHHHHHHHHHHHcCC
Q ss_pred CCeEEEe---------------eccCCCcHHHHh---hcCCCchH----HHHHHHHHHHHHHHCCCCceEE
Q 004623 231 GRAVRIG---------------TNHGSLSDRIMS---YYGDSPRG----MVESAFEFARICRKLDFHNFLF 279 (741)
Q Consensus 231 g~~IRIG---------------vN~GSL~~~il~---~yg~t~~a----mVeSAle~~~i~e~~~F~divi 279 (741)
++||-.| +..-++++.+++ ++.+.+++ =++-|.+.++-+.+.|.+.|-+
T Consensus 189 ~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~ 259 (281)
T TIGR00677 189 DCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHF 259 (281)
T ss_pred CCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEE
No 448
>PRK00865 glutamate racemase; Provisional
Probab=34.84 E-value=91 Score=32.90 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccC
Q 004623 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIH 169 (741)
+-+.+-+..|.+.|||.|=+++++.-.. ++..+++. +++|+|. |.
T Consensus 54 ~~~~~~~~~L~~~g~d~iVIaCNTa~~~-~l~~lr~~-----~~iPvig-i~ 98 (261)
T PRK00865 54 ERTLEIVEFLLEYGVKMLVIACNTASAV-ALPDLRER-----YDIPVVG-IV 98 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCchHHHH-HHHHHHHh-----CCCCEEe-eH
Confidence 3445566889999999999999987643 67778875 7899998 75
No 449
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=34.69 E-value=1.9e+02 Score=31.87 Aligned_cols=87 Identities=11% Similarity=0.201 Sum_probs=62.6
Q ss_pred ecCCCCceEEEeccCCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHhhccCCcccceeeccCCC
Q 004623 97 AIGSEHPIRVQTMTTNDT--KDVAGTVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFA 171 (741)
Q Consensus 97 ~IGG~~PI~VQSMt~t~T--~Dv~atv~Qi~~L~~aGceiVRvavp~~---~~A~al~~I~~~L~~~~~~iPLVADIHF~ 171 (741)
.+||.....|+.=++.-. ...+........+.+.|..-+.+-+-.. ++.+.+..|++. .|.++.|..|-|=.
T Consensus 122 LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~~d~~~v~avRe~---~g~~~~l~iDan~~ 198 (372)
T COG4948 122 LLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREA---VGDDVRLMVDANGG 198 (372)
T ss_pred HcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEecCCCCchHHHHHHHHHHHHH---hCCCceEEEeCCCC
Confidence 367776667776666553 3455666666677779999999986666 888999999986 45679999999987
Q ss_pred HHH--HHHHhhhcCcee
Q 004623 172 PSV--ALRVAECFDKIR 186 (741)
Q Consensus 172 ~~l--Al~a~~~vdkiR 186 (741)
+.+ |++.++.+++..
T Consensus 199 ~~~~~A~~~~~~l~~~~ 215 (372)
T COG4948 199 WTLEEAIRLARALEEYG 215 (372)
T ss_pred cCHHHHHHHHHHhcccC
Confidence 776 555555554443
No 450
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=34.58 E-value=2.3e+02 Score=29.76 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCC--HHHHHHHhhhcCceeeCCCCCCchh
Q 004623 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAECFDKIRVNPGNFADRR 196 (741)
Q Consensus 119 atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~vdkiRINPGNig~~~ 196 (741)
+.+..-.+-...|+.+|++.++..- ...|... -|=+-...++ .+.....++.++.+=|||| +++..
T Consensus 39 A~ila~l~~~~~g~~~v~~~~~~~~----~~~i~~~-------~pe~~~~~~~~~~~~~~~~~~~~davvig~G-l~~~~ 106 (272)
T TIGR00196 39 APLLAALAALRAGAGLVTVAAPENV----ITLINSV-------SPELIVHRLGWKVDEDEELLERYDVVVIGPG-LGQDP 106 (272)
T ss_pred HHHHHHHHHHHhCCCeEEEEEchhh----HHHHhhc-------CCEEEEecchhhHHHHHhhhccCCEEEEcCC-CCCCH
Confidence 4455555556669999999998722 2234332 2211112221 2222233345788999999 66633
Q ss_pred hhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE
Q 004623 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (741)
Q Consensus 197 k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 234 (741)
.+..+++.++++++|+
T Consensus 107 ----------------------~~~~l~~~~~~~~~pv 122 (272)
T TIGR00196 107 ----------------------SFKKAVEEVLELDKPV 122 (272)
T ss_pred ----------------------HHHHHHHHHHhcCCCE
Confidence 1566888888888876
No 451
>PRK13843 conjugal transfer protein TraH; Provisional
Probab=33.91 E-value=14 Score=38.71 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=26.4
Q ss_pred EEEecCChhHHHHHHHHHHHH-hhcCC-CCccccccccccCCCC
Q 004623 279 FSMKASNPVVMVQAYRLLVAE-MYVHG-WDYPLHLGVTEAGEGE 320 (741)
Q Consensus 279 iS~KaSnv~~~i~Ayrlla~~-m~~~g-~dyPLHLGVTEAG~~~ 320 (741)
++=|..+..+.++..|.+..+ .+.-| +.||.+||+++++...
T Consensus 45 L~~~P~s~~EA~~~vr~l~~~g~v~VGl~Qf~aGlgv~n~~~l~ 88 (207)
T PRK13843 45 LVPKPKTPDEAMALIRQYVGQAVVRVGLTQYPAGVGVVDAGQLK 88 (207)
T ss_pred ecCCCCCHHHHHHHHHHHHhcCceeeeeEEeccccceeehhhcc
Confidence 333445666666666555544 00011 7899999999998775
No 452
>PRK06256 biotin synthase; Validated
Probab=33.89 E-value=6.4e+02 Score=27.25 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRIT 138 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRva 138 (741)
..+.+.-+++++.+.+.|+.-+-+.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~ 114 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIV 114 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 4688999999999999998655554
No 453
>PHA00616 hypothetical protein
Probab=33.85 E-value=28 Score=28.42 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=23.3
Q ss_pred cCCCCccccccHHHHHHHHHHHhcCC
Q 004623 644 SCPSCGRTLFDLQEISAEIREKTSHL 669 (741)
Q Consensus 644 SCPsCGRTlfDLq~~~~~Ik~~t~hL 669 (741)
.||-||.+-.+.+++.+-++..+++-
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~~ 28 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQN 28 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCCC
Confidence 49999999999999999999988873
No 454
>PRK05588 histidinol-phosphatase; Provisional
Probab=33.70 E-value=1.9e+02 Score=30.13 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=55.1
Q ss_pred HHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEEecCChhHHHHHHHH
Q 004623 216 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 295 (741)
Q Consensus 216 I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~i~Ayrl 295 (741)
..+.+.+++++|+++|+++= +|.++|.+.. . + .| ....++.+.++|-.-|+++-=|..+...-.-+..
T Consensus 164 ~~~~~~~il~~~~~~g~~lE--INt~~l~~~~-~-~--~~------~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~ 231 (255)
T PRK05588 164 FKEIIDEILKVLIEKEKVLE--INTRRLDDKR-S-V--EN------LVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKF 231 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEE--EECcccCCCC-C-C--CC------HHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHH
Confidence 34457788999999999995 5778875421 1 1 12 2457888889998778999888888776555665
Q ss_pred HHHHhhcCCCC
Q 004623 296 LVAEMYVHGWD 306 (741)
Q Consensus 296 la~~m~~~g~d 306 (741)
..+.+.+.|++
T Consensus 232 ~~~~l~~~G~~ 242 (255)
T PRK05588 232 ALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHcCCE
Confidence 55555555554
No 455
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.69 E-value=1.7e+02 Score=31.43 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-c---CC-HHHHHHHHHHHHhhccCCc-ccceeeccCCCHHHHH----HHhhh-c
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRIT-V---QG-KREADACFEIKNSLVQKNY-NIPLVADIHFAPSVAL----RVAEC-F 182 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRva-v---p~-~~~A~al~~I~~~L~~~~~-~iPLVADIHF~~~lAl----~a~~~-v 182 (741)
..|.+..++-++++.++|++.|+++ + -+ .+-++-+..+++. + ++|+-.-.|-|+-+|+ +|+++ +
T Consensus 145 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~~i~~H~Hnd~GlA~AN~laA~~aGa 219 (274)
T cd07938 145 EVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER-----FPDEKLALHFHDTRGQALANILAALEAGV 219 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-----CCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 3488999999999999999999987 1 12 2344455555553 4 4899999999988887 45665 5
Q ss_pred Ccee
Q 004623 183 DKIR 186 (741)
Q Consensus 183 dkiR 186 (741)
+-|=
T Consensus 220 ~~id 223 (274)
T cd07938 220 RRFD 223 (274)
T ss_pred CEEE
Confidence 5433
No 456
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=33.51 E-value=5.6e+02 Score=27.43 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=71.7
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCC-CEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHh
Q 004623 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGA-DLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (741)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGc-eiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~ 179 (741)
+-||++|-. ..--.|.++.++|-++|.+..- +=+=|-+|--. +.++.|+. |.++|+++- +=.=|...-|+.|+
T Consensus 84 ~G~Vs~ev~-~~~~~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~--~Gl~A~~~-L~~~GI~vn--~T~vfs~~Qa~~aa 157 (252)
T cd00439 84 DGRVSVEVS-ARLADDTQGMVEAAKYLSKVVNRRNIYIKIPATA--EGIPAIKD-LIAAGISVN--VTLIFSIAQYEAVA 157 (252)
T ss_pred CCeEEEEEe-ccccCCHHHHHHHHHHHHHhcCcccEEEEeCCCH--HHHHHHHH-HHHCCCcee--eeeecCHHHHHHHH
Confidence 558999974 2223789999999999999875 22445666543 33444443 455575544 44468889999999
Q ss_pred hh-cCceeeCCCCCCchhh-hccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 180 EC-FDKIRVNPGNFADRRA-QFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 180 ~~-vdkiRINPGNig~~~k-~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
++ ++=|-..=|=+-+.-. .-.... .|.....+.+.+++ +.+..++++...||
T Consensus 158 ~Aga~~ispfvgRid~~~~~~~~~~~-~d~~~~~gi~~~~~----~~~~~~~~~~~tki 211 (252)
T cd00439 158 DAGTSVASPFVSRIDTLMDKMLEQIG-LDLRGKAGVAQVTL----AYKLYKQKFKKQRV 211 (252)
T ss_pred HcCCCEEEEeccHHHHHhhhhccccc-cccccCcHHHHHHH----HHHHHHHhCCCCeE
Confidence 97 6666555554422100 000000 01111234444444 55566777766666
No 457
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.18 E-value=1.3e+02 Score=32.69 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCcee
Q 004623 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR 186 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR 186 (741)
|++|.++.+++|+|+|.+--++.++.+.+-++.+ ...-++.+.|=-..++.-+.+.++. +|-|=
T Consensus 191 tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~---~~~~~~~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRN---ANYPHVLLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh---ccCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 7889999999999999999998888776665533 1123467989888898888887776 77553
No 458
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=33.12 E-value=3.2e+02 Score=30.02 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCeEEEeeccCCCcHHHH
Q 004623 220 FSPLVEKCKKYGRAVRIGTNHGSLSDRIM 248 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIGvN~GSL~~~il 248 (741)
|.++++.+|++|+.+.|=+|.--|+++.+
T Consensus 79 ~~~il~~~~~~g~~~~i~TNG~ll~~~~~ 107 (378)
T PRK05301 79 LEELVAHARELGLYTNLITSGVGLTEARL 107 (378)
T ss_pred HHHHHHHHHHcCCcEEEECCCccCCHHHH
Confidence 66788999999988888787544555443
No 459
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=33.08 E-value=95 Score=33.52 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-cCCH----HHHHHHHHHHHhhccCCcc-cceeeccCCCHHHHH----HHhhh-c
Q 004623 114 TKDVAGTVEEVMRIADQGADLVRIT-VQGK----READACFEIKNSLVQKNYN-IPLVADIHFAPSVAL----RVAEC-F 182 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~aGceiVRva-vp~~----~~A~al~~I~~~L~~~~~~-iPLVADIHF~~~lAl----~a~~~-v 182 (741)
..|.+..++.++++.++|++.|+++ +-+. +-.+-++.+++. ++ +||-.-.|-|+-+|+ +|+++ +
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAE-----FPAERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHh-----CCCCeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 3578999999999999999988887 1122 334445555553 44 899888887777776 56665 6
Q ss_pred Ccee
Q 004623 183 DKIR 186 (741)
Q Consensus 183 dkiR 186 (741)
+-|=
T Consensus 226 ~~id 229 (287)
T PRK05692 226 TVFD 229 (287)
T ss_pred CEEE
Confidence 6553
No 460
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.08 E-value=2.8e+02 Score=29.51 Aligned_cols=168 Identities=14% Similarity=0.208 Sum_probs=95.8
Q ss_pred cCCCCceEEEeccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC------Ccccce---ee
Q 004623 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK------NYNIPL---VA 166 (741)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~------~~~iPL---VA 166 (741)
|||+ -+.|+||.. .|..+.+-+-.|+++|.+| |++=..=.+.| .-+..+.+.+... .-.+++ +.
T Consensus 18 I~gd-~v~V~~li~~g~dpH~yep~p~d~~~l~~A--dliv~~G~~~E--~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (276)
T cd01016 18 IGGD-HVEVTGLMGPGVDPHLYKATAGDVEKLQNA--DVVFYNGLHLE--GKMSDVLSKLGSSKSVIALEDTLDRSQLIL 92 (276)
T ss_pred HcCC-eEEEEEeeCCCCCcccCCCCHHHHHHHHhC--CEEEEcCcChH--HHHHHHHHHhccCCceEEeccCcCcccccc
Confidence 5665 589999864 6789999999999999976 55544434554 3555555543210 001122 11
Q ss_pred -------ccC--CCHHHHHHHhhh-cCc-eeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE
Q 004623 167 -------DIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (741)
Q Consensus 167 -------DIH--F~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 235 (741)
|=| +||..|...++. .+. .++.|-|=.. |+. .-+.|.++|+.+++.+++.+...+++++.+
T Consensus 93 ~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~----y~~---N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~- 164 (276)
T cd01016 93 DEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDE----FQA---NSEAYVEELDSLDAYAKKKIAEIPEQQRVL- 164 (276)
T ss_pred cccCCCCCCCcccCHHHHHHHHHHHHHHHHHHCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHHhhCchhcCeE-
Confidence 222 234566666665 222 2468887311 111 135688888888888888777644433333
Q ss_pred EeeccCCCcHHHHhhcCCCc---hHH-------HHHHHHHHHHHHHCCCCceEEE
Q 004623 236 IGTNHGSLSDRIMSYYGDSP---RGM-------VESAFEFARICRKLDFHNFLFS 280 (741)
Q Consensus 236 IGvN~GSL~~~il~~yg~t~---~am-------VeSAle~~~i~e~~~F~diviS 280 (741)
=+.|.++ ..+.++||-+. .++ ...-.+.++.+++.+-.-|...
T Consensus 165 -~t~H~af-~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e 217 (276)
T cd01016 165 -VTAHDAF-GYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVE 217 (276)
T ss_pred -EEecCcH-HHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 5677766 56778887221 111 1223345566677776654443
No 461
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=33.07 E-value=1.6e+02 Score=35.20 Aligned_cols=136 Identities=17% Similarity=0.173 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhccCCcccceeeccCCCH--H--------HHHHHhhh--cCceee
Q 004623 121 VEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAP--S--------VALRVAEC--FDKIRV 187 (741)
Q Consensus 121 v~Qi~~L~~aGceiVRva-vp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~--~--------lAl~a~~~--vdkiRI 187 (741)
-.|+..|.++|+|++=+- .|+.++|+++-+..+.+ .++|++.=+.|+. + -|...++. ++.|=|
T Consensus 128 ~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~----~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~~~~~avGi 203 (612)
T PRK08645 128 REQIDALLEEGVDGLLLETFYDLEELLLALEAAREK----TDLPIIAQVAFHEDGVTQNGTSLEEALKELVAAGADVVGL 203 (612)
T ss_pred HHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHh----CCCcEEEEEEECCCCeeCCCCCHHHHHHHHHhCCCCEEEe
Confidence 567889999999999984 89999999877766642 2388877666532 1 12222221 333333
Q ss_pred CCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhc-CCeEEEeeccCCCcHH-HHhhcCCCchHHHHHHHHH
Q 004623 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GRAVRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEF 265 (741)
Q Consensus 188 NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~-g~~IRIGvN~GSL~~~-il~~yg~t~~amVeSAle~ 265 (741)
|=+. +.. .+.++++..+.. ++|+=+=-|+|..... --..|..+|+.+.+.+.++
T Consensus 204 NC~~--~p~----------------------~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~ 259 (612)
T PRK08645 204 NCGL--GPY----------------------HMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEF 259 (612)
T ss_pred cCCC--CHH----------------------HHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 3221 011 233344444332 3455444688874321 1123545788888888776
Q ss_pred HHHHHHCCCCceEEEEecCChhHH
Q 004623 266 ARICRKLDFHNFLFSMKASNPVVM 289 (741)
Q Consensus 266 ~~i~e~~~F~diviS~KaSnv~~~ 289 (741)
++. | =+|+=-|=-+++...
T Consensus 260 ~~~----G-a~iiGGCCgt~P~hI 278 (612)
T PRK08645 260 VEQ----G-VRLIGGCCGTTPEHI 278 (612)
T ss_pred HHh----C-CCEEeEecCCCHHHH
Confidence 543 5 344445545555433
No 462
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.98 E-value=5.2e+02 Score=28.96 Aligned_cols=132 Identities=14% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCce
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~-------A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdki 185 (741)
..++++..+++|+.|.+.|..-|.++-++.-. ...+.++.+.|.+ +| .+..+
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~----~~-----------------~~~~i 223 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ----IP-----------------GIKRI 223 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc----CC-----------------CCcEE
Confidence 46789999999999999999888887433311 1123333332211 11 12224
Q ss_pred ee---CCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC-C--eEEEeeccCCCcHHHHhhcCCCchHHH
Q 004623 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-R--AVRIGTNHGSLSDRIMSYYGDSPRGMV 259 (741)
Q Consensus 186 RI---NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g-~--~IRIGvN~GSL~~~il~~yg~t~~amV 259 (741)
|+ +|.++- .++++..++.+ + -+=||+-|| ++++|++++-.. -+
T Consensus 224 r~~~~~p~~~~---------------------------~ell~~m~~~~~~~~~l~lglESg--s~~vLk~m~R~~--~~ 272 (414)
T TIGR01579 224 RLSSIDPEDID---------------------------EELLEAIASEKRLCPHLHLSLQSG--SDRVLKRMRRKY--TR 272 (414)
T ss_pred EEeCCChhhCC---------------------------HHHHHHHHhcCccCCCeEECCCcC--ChHHHHhcCCCC--CH
Confidence 43 454441 23566666554 2 356676554 578898886321 13
Q ss_pred HHHHHHHHHHHH--CCC---CceEEEEecCChhHHHHHHHHH
Q 004623 260 ESAFEFARICRK--LDF---HNFLFSMKASNPVVMVQAYRLL 296 (741)
Q Consensus 260 eSAle~~~i~e~--~~F---~diviS~KaSnv~~~i~Ayrll 296 (741)
+...+.++.+.+ .|+ .++++-+=.-+..++.+..+.+
T Consensus 273 ~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 273 DDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred HHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 556677777777 666 3566666443333334444433
No 463
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=32.86 E-value=2.1e+02 Score=29.17 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccC-CcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhcccc
Q 004623 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQK-NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQL 202 (741)
Q Consensus 124 i~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~-~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~ 202 (741)
+.++...++.|+=|.+-+...-+.+..+++.+.+. |+.+-.+-++. ++ -..+.+..+|.|=+.-||...--
T Consensus 24 l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~-~~-~~~~~l~~ad~I~l~GG~~~~~~------ 95 (212)
T cd03146 24 LLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD-TE-DPLDALLEADVIYVGGGNTFNLL------ 95 (212)
T ss_pred HHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC-cc-cHHHHHhcCCEEEECCchHHHHH------
Confidence 33443456667766666655556788888888888 88766665443 22 22456667888988888774422
Q ss_pred ccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCC
Q 004623 203 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (741)
Q Consensus 203 ~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL 243 (741)
+.|++- .+.++++.+-++|.++ +|+-.|+.
T Consensus 96 --------~~l~~~--~l~~~l~~~~~~g~~i-~G~SAGa~ 125 (212)
T cd03146 96 --------AQWREH--GLDAILKAALERGVVY-IGWSAGSN 125 (212)
T ss_pred --------HHHHHc--CHHHHHHHHHHCCCEE-EEECHhHH
Confidence 222221 3556666666778776 89988876
No 464
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.76 E-value=1.5e+02 Score=32.25 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=64.3
Q ss_pred cCCCCceEEE-eccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecC-----------CHHHHHHHHHHHHhhccCCcccc
Q 004623 98 IGSEHPIRVQ-TMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQ-----------GKREADACFEIKNSLVQKNYNIP 163 (741)
Q Consensus 98 IGG~~PI~VQ-SMt~--t~T~Dv~atv~Qi~~L~~aGceiVRvavp-----------~~~~A~al~~I~~~L~~~~~~iP 163 (741)
+|.+-||.|= |... -.-.|.+.+++=+++|+++|.|+|=|+.. .......++.|++. .++|
T Consensus 218 vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-----~~iP 292 (336)
T cd02932 218 WPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-----AGIP 292 (336)
T ss_pred cCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-----CCCC
Confidence 4667777772 2110 01235778888888999999999987521 11234556677775 6799
Q ss_pred eeeccCC-CHHHHHHHhhh--cCceeeCCCCCCchh
Q 004623 164 LVADIHF-APSVALRVAEC--FDKIRVNPGNFADRR 196 (741)
Q Consensus 164 LVADIHF-~~~lAl~a~~~--vdkiRINPGNig~~~ 196 (741)
+++.-.+ ++.-|.++++. +|-|-+-=+.|.+.+
T Consensus 293 Vi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~ 328 (336)
T cd02932 293 VIAVGLITDPEQAEAILESGRADLVALGRELLRNPY 328 (336)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCcc
Confidence 9999886 68888888874 888877666666644
No 465
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=32.71 E-value=4.3e+02 Score=24.87 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHcCCCE---EEEecCCH--------HHHHHHHHHHHhhccC-Ccccceeec-cCCCHHHHHHHhhh
Q 004623 115 KDVAGTVEEVMRIADQGADL---VRITVQGK--------READACFEIKNSLVQK-NYNIPLVAD-IHFAPSVALRVAEC 181 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGcei---VRvavp~~--------~~A~al~~I~~~L~~~-~~~iPLVAD-IHF~~~lAl~a~~~ 181 (741)
.+++...+++.++.+.|... -.+...+- .-.+-+..|++..... +..+.+... .+.+.+.+..-.+.
T Consensus 30 ~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~ 109 (216)
T smart00729 30 RYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEA 109 (216)
T ss_pred HHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHc
Confidence 35677777777776666432 23322221 1233444444431110 345666665 34556665554554
Q ss_pred -cCceeeCCCCCCchhhhccccccchHHHHH-HHHhHHHhHHHHHHHHHhcC-CeEEEeeccCCCcHHHHhhcCCCchHH
Q 004623 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQK-ELQHIEEVFSPLVEKCKKYG-RAVRIGTNHGSLSDRIMSYYGDSPRGM 258 (741)
Q Consensus 182 -vdkiRINPGNig~~~k~f~~~~Ytdeey~~-ele~I~e~~~~vv~~ake~g-~~IRIGvN~GSL~~~il~~yg~t~~am 258 (741)
++.+.|..-..-.. -|+. ....--+++..-++.++++| +.+++++--|-- +++.+.+
T Consensus 110 ~~~~i~isl~~~~~~------------~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~--------~~~~~~~ 169 (216)
T smart00729 110 GVNRVSLGVQSGSDE------------VLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLP--------GETEEDF 169 (216)
T ss_pred CCCeEEEecccCCHH------------HHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEecCC--------CCCHHHH
Confidence 66666655433111 1110 00111144566777888888 777766532211 1233333
Q ss_pred HHHHHHHHHHHHHCCCCceEEEE
Q 004623 259 VESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 259 VeSAle~~~i~e~~~F~diviS~ 281 (741)
.+.++.+.++|.+.|.++.
T Consensus 170 ----~~~~~~~~~~~~~~i~~~~ 188 (216)
T smart00729 170 ----EETLKLLKELGPDRVSIFP 188 (216)
T ss_pred ----HHHHHHHHHcCCCeEEeee
Confidence 4455557888988776543
No 466
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=32.68 E-value=5.1e+02 Score=26.52 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHhhccCCcccceeeccCCC--HHHHHHH-------hhh
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRV-------AEC 181 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~--A~al~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a-------~~~ 181 (741)
|+.|.+.+++=+.++.+ ..+++-+-.|=..+ .+.+.++.+.|++.+ .|+++|.=+. +...-.+ .+.
T Consensus 8 D~~~~~~a~~i~~~~~~-~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~--~~I~~D~K~~Dig~t~~~~~~~~~~~~~~ 84 (226)
T PF00215_consen 8 DPTDLEEALRIADELGD-YVDIIKVGTPLFLAYGLEALPEIIEELKERG--KPIFLDLKLGDIGNTVARYAEAGFAAFEL 84 (226)
T ss_dssp -SSSHHHHHHHHHHHGG-GSSEEEEEHHHHHHHCHHHHHHHHHHHHHTT--SEEEEEEEE-SSHHHHHHHHHSCHHHHTT
T ss_pred CCCCHHHHHHHHHHhcC-cceEEEEChHHHhcCChhhHHHHHHHHHHhc--CCEeeeeeecccchHHHHHHHHhhhhhcC
Confidence 56667777766666666 88899888765543 236777888887777 9999996554 3333222 344
Q ss_pred -cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEee-ccCCCcHHHHhhcC-CCchHH
Q 004623 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYG-DSPRGM 258 (741)
Q Consensus 182 -vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg-~t~~am 258 (741)
+|-+=++|=. + . +.++++++.|+++|.+.-++| --.|.+..-+..++ .....+
T Consensus 85 gaD~vTv~~~~--G-~---------------------~tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~ 140 (226)
T PF00215_consen 85 GADAVTVHPFA--G-D---------------------DTLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQDLGLGVDQEI 140 (226)
T ss_dssp TESEEEEEGTT--H-H---------------------HHHHHHHHHHHHTTESEEEEEESTTSTTHHHHHHHHCTHHHHH
T ss_pred CCcEEEEeccC--C-H---------------------HHHHHHHHHHhccCCcceEEEEecCCCCHHHHHhhhcccHHHH
Confidence 8989898843 2 1 248899999999983333343 23444443333333 112233
Q ss_pred HHHHHHHHHHHHHCCCCceEEEE
Q 004623 259 VESAFEFARICRKLDFHNFLFSM 281 (741)
Q Consensus 259 VeSAle~~~i~e~~~F~diviS~ 281 (741)
|+.+.+ .-.+.|+.-++.|.
T Consensus 141 v~~~~~---~~~~~g~~G~v~~~ 160 (226)
T PF00215_consen 141 VHRAAD---LAAKAGVDGIVCSA 160 (226)
T ss_dssp HHHHHH---HHHHTTEEEEEETT
T ss_pred HHHHHH---hhccccccCccccc
Confidence 333332 22246777777775
No 467
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=32.50 E-value=8.7e+02 Score=28.39 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=95.6
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCC-cccceeeccCCCHHHHHHHhhh----cCceeeCCCCCCchhhh
Q 004623 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKN-YNIPLVADIHFAPSVALRVAEC----FDKIRVNPGNFADRRAQ 198 (741)
Q Consensus 124 i~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~-~~iPLVADIHF~~~lAl~a~~~----vdkiRINPGNig~~~k~ 198 (741)
+..+.+.|.|. |.+|=.+.|+.+..+++.|.+.+ -+++++|=| .-..|++.++. .|.|=+-||.++-.-.
T Consensus 177 l~~~~~~~~d~--I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~I--Et~~av~nl~eI~~~~dgi~iG~gDL~~~lg- 251 (473)
T TIGR01064 177 LKFGVEQGVDM--VAASFVRTAEDVLEVREVLGEKGAKDVKIIAKI--ENQEGVDNIDEIAEASDGIMVARGDLGVEIP- 251 (473)
T ss_pred HHHHHHCCCCE--EEECCCCCHHHHHHHHHHHHhcCCCCceEEEEE--CCHHHHHhHHHHHhhCCcEEEchHHHHhhcC-
Confidence 44556778998 55556666667777777776655 368888888 44566655542 5777788887754221
Q ss_pred ccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCc
Q 004623 199 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHN 276 (741)
Q Consensus 199 f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~d 276 (741)
.+.+....+.++.+|+++|+|. ++-. .+|+..- +.|. .+-...+.-+-..||+=
T Consensus 252 --------------~~~l~~~~~~ii~aaraag~pv--i~at-----qmLeSM~~~p~PT---RAe~~dv~~~v~~G~d~ 307 (473)
T TIGR01064 252 --------------AEEVPIAQKKMIRKCNRAGKPV--ITAT-----QMLDSMIKNPRPT---RAEVSDVANAILDGTDA 307 (473)
T ss_pred --------------cHHHHHHHHHHHHHHHHcCCCE--EEEC-----hhhhhhhcCCCCC---cccHHHHHHHHHcCCCE
Confidence 1234445678999999999996 4411 2232211 1110 01124555667789999
Q ss_pred eEEEEe---cCChhHHHHHHHHHHHHhhc
Q 004623 277 FLFSMK---ASNPVVMVQAYRLLVAEMYV 302 (741)
Q Consensus 277 iviS~K---aSnv~~~i~Ayrlla~~m~~ 302 (741)
+.+|.= -..|.++|+.-+.++++.++
T Consensus 308 v~ls~eta~G~yP~~~v~~m~~I~~~~E~ 336 (473)
T TIGR01064 308 VMLSGETAKGKYPVEAVKMMAKIAKEAEK 336 (473)
T ss_pred EEEcchhhcCCCHHHHHHHHHHHHHHHHh
Confidence 999754 44688889999999988764
No 468
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=32.42 E-value=1.9e+02 Score=29.77 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHH---cCCCEEEEecCCHHHHHHHHHHHHhhccCC-cccceeeccCCCHHHHHHHhhhcCceeeCC
Q 004623 114 TKDVAGTVEEVMRIAD---QGADLVRITVQGKREADACFEIKNSLVQKN-YNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 114 T~Dv~atv~Qi~~L~~---aGceiVRvavp~~~~A~al~~I~~~L~~~~-~~iPLVADIHF~~~lAl~a~~~vdkiRINP 189 (741)
+..++..++++.++++ .-+=++|+..|+- ....+.+|.+.|++.. .+.|+||=.+.-..-+...+-++|+|=.+|
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVia~~~~~~sggy~lasaad~I~a~p 106 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVIAYADGYSQGQYYLASAADEIYLNP 106 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEEEEeCCCCchhhhhhhhCCEEEECC
Confidence 4556777777777765 4556778888877 5666677776654422 568999866643222323333488888888
Q ss_pred CC
Q 004623 190 GN 191 (741)
Q Consensus 190 GN 191 (741)
.-
T Consensus 107 ~~ 108 (222)
T cd07018 107 SG 108 (222)
T ss_pred Cc
Confidence 63
No 469
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=32.42 E-value=1.3e+02 Score=29.27 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCC-EEEEecCCHHHHHHHHHHHHhhccCCc--ccceeeccCCCHHHH
Q 004623 117 VAGTVEEVMRIADQGAD-LVRITVQGKREADACFEIKNSLVQKNY--NIPLVADIHFAPSVA 175 (741)
Q Consensus 117 v~atv~Qi~~L~~aGce-iVRvavp~~~~A~al~~I~~~L~~~~~--~iPLVADIHF~~~lA 175 (741)
+.+-.+...++.+.||+ ++-|++.+..+.++.. ++ .+. +.||++|-+ ..++
T Consensus 50 ~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~---~~---~~~~~~f~lLsD~~--~~~~ 103 (155)
T cd03013 50 LPGYVENADELKAKGVDEVICVSVNDPFVMKAWG---KA---LGAKDKIRFLADGN--GEFT 103 (155)
T ss_pred HHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHH---Hh---hCCCCcEEEEECCC--HHHH
Confidence 44556667888999995 9999999888765553 22 234 789999954 4444
No 470
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=32.42 E-value=6.8e+02 Score=27.93 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCceEEEeccCCCC--CCHHHHHHHHHHHHHcC----CCEEEEecCCHHHHHHHHHHHHhhccCCcccceeecc------
Q 004623 101 EHPIRVQTMTTNDT--KDVAGTVEEVMRIADQG----ADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI------ 168 (741)
Q Consensus 101 ~~PI~VQSMt~t~T--~Dv~atv~Qi~~L~~aG----ceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADI------ 168 (741)
..||.+-.||-..+ .++...+. ....++| .--.|.+.-+.+.++.+..+++. .-+.|++|-|
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La--~~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~----~p~~p~~aNl~~~~~~ 133 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLA--EAAEELGIAMGVGSQRAALKDPELADSFSVVRKV----APDGLLFANLGAVQLY 133 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHH--HHHHHcCCCeEecccHhhccChhhHHHHHHHHHH----CCCceEEeecCccccC
Confidence 78999999996543 22222222 2334555 11237777777788888888885 2268888843
Q ss_pred CCCHHHHHHHhhh--cCceeeCC
Q 004623 169 HFAPSVALRVAEC--FDKIRVNP 189 (741)
Q Consensus 169 HF~~~lAl~a~~~--vdkiRINP 189 (741)
.+++..+.++++. .+.+-||-
T Consensus 134 ~~~~~~~~~~~~~~~adal~l~l 156 (352)
T PRK05437 134 GYGVEEAQRAVEMIEADALQIHL 156 (352)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeC
Confidence 4556666666664 56666654
No 471
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=32.42 E-value=17 Score=34.38 Aligned_cols=14 Identities=50% Similarity=1.381 Sum_probs=12.5
Q ss_pred cCCCCccccccHHH
Q 004623 644 SCPSCGRTLFDLQE 657 (741)
Q Consensus 644 SCPsCGRTlfDLq~ 657 (741)
.||+||...|||..
T Consensus 11 ~Cp~CG~kFYDLnk 24 (108)
T PF09538_consen 11 TCPSCGAKFYDLNK 24 (108)
T ss_pred cCCCCcchhccCCC
Confidence 59999999999965
No 472
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=32.25 E-value=95 Score=32.01 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=56.3
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHhhccCCcccceeeccCC---CHHHHHH
Q 004623 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHF---APSVALR 177 (741)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~-------A~al~~I~~~L~~~~~~iPLVADIHF---~~~lAl~ 177 (741)
|+...|-.+. -+|+++|.++|++.+=+-+-|-.= -+-++.|++ . +++| -|+|. ||..-++
T Consensus 5 Sil~ad~~~l---~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~----~-~~~~--~DvHLMv~~P~~~i~ 74 (201)
T PF00834_consen 5 SILSADFLNL---EEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRK----I-TDLP--LDVHLMVENPERYIE 74 (201)
T ss_dssp BGGGS-GGGH---HHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHT----T-SSSE--EEEEEESSSGGGHHH
T ss_pred hhhhCCHHHH---HHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhh----c-CCCc--EEEEeeeccHHHHHH
Confidence 4444444444 467888899999999988544222 233444444 2 4444 48887 3433333
Q ss_pred Hh-hh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC
Q 004623 178 VA-EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (741)
Q Consensus 178 a~-~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 242 (741)
.. ++ ++.|=+-+-+. +...++++.+|++|+..=|.+|-+.
T Consensus 75 ~~~~~g~~~i~~H~E~~-------------------------~~~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 75 EFAEAGADYITFHAEAT-------------------------EDPKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp HHHHHT-SEEEEEGGGT-------------------------TTHHHHHHHHHHTTSEEEEEE-TTS
T ss_pred HHHhcCCCEEEEcccch-------------------------hCHHHHHHHHHHhCCCEEEEEECCC
Confidence 32 33 45443333221 1356689999999988877788775
No 473
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=32.22 E-value=76 Score=34.70 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIH 169 (741)
.+++.+++..++.++||+|+|=+- +.+..+.++++.+. +++||++..-
T Consensus 163 ~g~deAI~Ra~aY~eAGAD~ifi~--~~~~~~~i~~~~~~-----~~~Pl~~n~~ 210 (292)
T PRK11320 163 EGLDAAIERAQAYVEAGADMIFPE--AMTELEMYRRFADA-----VKVPILANIT 210 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHHHHHHh-----cCCCEEEEec
Confidence 468999999999999999998774 44566667777775 5788877553
No 474
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.17 E-value=1.7e+02 Score=31.21 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=80.3
Q ss_pred cCCCCceEEEeccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhc-----cCCccccee--e--
Q 004623 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLV-----QKNYNIPLV--A-- 166 (741)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~-----~~~~~iPLV--A-- 166 (741)
|||+. +.|+|+.. +|..+.+.+.+++++|.+ ||++=..=.+.+ .-+..+.+.+. ...-.+++. -
T Consensus 20 I~Gd~-v~V~~li~~g~dpH~ye~~p~d~~~l~~--Adliv~~G~~le--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 94 (286)
T cd01019 20 IMGGV-GEVEVLVPPGASPHDYELRPSDARKLQE--ADLVVWIGPDLE--AFLDKVLQGRKKGKVLTLAKLIDLKTLEDG 94 (286)
T ss_pred HcCCC-cceEEecCCCCCccCCCCCHHHHHHHHh--CCEEEEeCCCch--HHHHHHHHhcCcCceEecccCCcccccccc
Confidence 66664 67778754 677999999999999998 466655444444 24444444321 000011221 0
Q ss_pred -------------------------c--cCCCHHHHHHHhhh-cCc-eeeCCCCCCchhhhccccccchHHHHHHHHhHH
Q 004623 167 -------------------------D--IHFAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 217 (741)
Q Consensus 167 -------------------------D--IHF~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~ 217 (741)
| +-++|..+...++. .++ +++.|.|=.. |+. .-+.|.++|+.+.
T Consensus 95 ~~~~~~~h~~~~~~~~~~~~~~~~~dPHiWldp~n~~~~a~~I~~~L~~~dP~~~~~----y~~---N~~~~~~~L~~l~ 167 (286)
T cd01019 95 ASHGDHEHDHEHAHGEHDGHEEGGLDPHLWLSPENAAEVAQAVAEKLSALDPDNAAT----YAA---NLEAFNARLAELD 167 (286)
T ss_pred cccccccccccccccccCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHCchhHHH----HHH---HHHHHHHHHHHHH
Confidence 1 11456677777765 444 4588887311 111 1356888888888
Q ss_pred HhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC
Q 004623 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (741)
Q Consensus 218 e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg 252 (741)
++.+..+..++. +. +=+-|.++. .+.++||
T Consensus 168 ~~~~~~~~~~~~--~~--~v~~H~af~-Yl~~~~g 197 (286)
T cd01019 168 ATIKERLAPVKT--KP--FFVFHDAYG-YFEKRYG 197 (286)
T ss_pred HHHHHHhhccCC--Ce--EEEecccHH-HHHHHcC
Confidence 877777766543 22 234677764 5666665
No 475
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=32.01 E-value=2.5e+02 Score=29.50 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=80.0
Q ss_pred cccccchHHHHHHHHhHHHhHHHHHHHHHhcC-C--eEEEeeccCCCcHHHHhhcCCCchHH--HHHHHHHHHHHHHCCC
Q 004623 200 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-R--AVRIGTNHGSLSDRIMSYYGDSPRGM--VESAFEFARICRKLDF 274 (741)
Q Consensus 200 ~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g-~--~IRIGvN~GSL~~~il~~yg~t~~am--VeSAle~~~i~e~~~F 274 (741)
..+-+|+.|.+.||---+|....++..++..- . |.=|-|||-|| |..+.-| +..||--. ++++..|
T Consensus 15 k~~Glt~gEIAdELNvSreTa~WL~~r~~~~~~~~~p~Di~i~W~si--------G~s~sRl~~Is~am~Dm-~m~~~~~ 85 (203)
T COG0856 15 KSKGLTTGEIADELNVSRETATWLLTRAFKKESVPAPVDIKIDWRSI--------GKSGSRLRYISEAMADM-IMEKVSF 85 (203)
T ss_pred HHCCCcHHHhhhhhhhhHHHHHHHHhhhhhccCCCCCcceEEechhh--------ccchHHHHHHHHHHHHH-HHHhccc
Confidence 34557899999999999999999998875432 2 45789999998 3222222 33333222 7888888
Q ss_pred -CceEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhH
Q 004623 275 -HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 327 (741)
Q Consensus 275 -~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dyPLHLGVTEAG~~~~G~IKSa 327 (741)
-|+|+-+-.|-++.. .+.|.+|.++-.-|--|=+-+|-|.+..|.|.|-
T Consensus 86 evDvVvGIa~sGvPlA----tmvA~elg~elaiY~PrK~~~de~~~~~G~iS~N 135 (203)
T COG0856 86 EVDVVVGIAISGVPLA----TMVAYELGKELAIYHPRKHRKDEGAGKGGSISSN 135 (203)
T ss_pred eeEEEEEEeecCccHH----HHHHHHhCCceEEEecccccccccCCcCceeecc
Confidence 689999999988754 2344444433345767888899888888887664
No 476
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=32.00 E-value=6.1e+02 Score=27.74 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=21.5
Q ss_pred cCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCC
Q 004623 240 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (741)
Q Consensus 240 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F 274 (741)
.|-++..++ +| |++.+-+.+.+.++.+..-||
T Consensus 286 ~Gni~p~ll--~g-t~e~i~~~~~~~i~~~~~~gf 317 (346)
T PRK00115 286 QGNLDPAVL--LA-PPEAIEEEVRAILDGGGGPGH 317 (346)
T ss_pred EeCCChhHh--cC-CHHHHHHHHHHHHHHhCCCCe
Confidence 666777655 45 588888888877777644443
No 477
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=31.89 E-value=75 Score=34.63 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIH 169 (741)
.+++.+++..++.++||+|.|=+- +.+..+.+.++.+. +++||++.+.
T Consensus 158 ~g~deAI~Ra~ay~~AGAD~vfi~--g~~~~e~i~~~~~~-----i~~Pl~~n~~ 205 (285)
T TIGR02317 158 EGLDAAIERAKAYVEAGADMIFPE--ALTSLEEFRQFAKA-----VKVPLLANMT 205 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeC--CCCCHHHHHHHHHh-----cCCCEEEEec
Confidence 469999999999999999998774 44455567777775 6788876654
No 478
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.87 E-value=2.8e+02 Score=27.95 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhh-cCceeeCC
Q 004623 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNP 189 (741)
Q Consensus 122 ~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINP 189 (741)
.|+..+.++|||.|=+-.++... +.+.++.+.... ..+-.+.++| ++.-+.++.+. ++-+=+|+
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~-~~~~~~~~~~~~--~g~~~~v~v~-~~~e~~~~~~~g~~~i~~t~ 149 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDD-EQLKELYELARE--LGMEVLVEVH-DEEELERALALGAKIIGINN 149 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCH-HHHHHHHHHHHH--cCCeEEEEEC-CHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999766555543 444444444333 4456688998 77777777776 77776773
No 479
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=31.78 E-value=1e+02 Score=28.27 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceeecc-----C---CCHHHHHHHhhhcCceee
Q 004623 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI-----H---FAPSVALRVAECFDKIRV 187 (741)
Q Consensus 116 Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVADI-----H---F~~~lAl~a~~~vdkiRI 187 (741)
|.+.-++.+.. ..++++..+-.-......+.+.+.|.+.|+++..+.-. + -|-+++..+++.+. +=
T Consensus 21 ~~~~l~~~i~~----~~~~~~~~~y~~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~--~~ 94 (146)
T PF01936_consen 21 DFERLLEEIRK----YGPLVRIRAYGNWDDPNQKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAY--EN 94 (146)
T ss_dssp -HHHHHHHHTT----TEEEEEEEEEE----HHHHHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG----G
T ss_pred CHHHHHHHHHh----cCCeEEEEEEeeccccchhhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhh--cc
Confidence 55555555554 66786666555555556777778888878755433221 1 22355555555431 22
Q ss_pred CCCCC--CchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhh
Q 004623 188 NPGNF--ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (741)
Q Consensus 188 NPGNi--g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~ 250 (741)
+|.++ .+++. -|.++++.++++|+.+-+=.-..+.++.+.+.
T Consensus 95 ~~d~ivLvSgD~---------------------Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ 138 (146)
T PF01936_consen 95 PPDTIVLVSGDS---------------------DFAPLVRKLRERGKRVIVVGAEDSASEALRSA 138 (146)
T ss_dssp G-SEEEEE---G---------------------GGHHHHHHHHHH--EEEEEE-GGGS-HHHHHH
T ss_pred CCCEEEEEECcH---------------------HHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHh
Confidence 33665 22222 28999999999998654433345666665543
No 480
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=31.76 E-value=4.2e+02 Score=29.12 Aligned_cols=126 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhhhhhhhhhccccccCcccceeEEeccCCCCHHHHHHh-----hcCCceEEEeeCCCCCCccc-h-hHHHHHHHHHH-H
Q 004623 496 MVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEIL-----KDIDATMILHDLPFNEDKIG-R-VQAARRLFEYL-S 567 (741)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l-----~~~~~vvi~l~~~~~s~~~~-~-v~~~R~l~~~L-~ 567 (741)
++++++.+++...... +|++-.-.-.+.|.+..+ ....|+++.+. .+.... . ......++..+ +
T Consensus 1 M~lv~~k~lL~~A~~~-----~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~---~~~~~~~~~~~~~~~~~~~~A~ 72 (286)
T PRK08610 1 MPLVSMKEMLIDAKEN-----GYAVGQYNLNNLEFTQAILEASQEENAPVILGVS---EGAARYMSGFYTVVKMVEGLMH 72 (286)
T ss_pred CCCCcHHHHHHHHHHC-----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcC---ccHHhhcCcHHHHHHHHHHHHH
Q ss_pred hcCCCCCeEEeccccCCCCCcc-hhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhcccCcce
Q 004623 568 ENNLNFPVIHHIQFPNGIHRDD-LVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTE 641 (741)
Q Consensus 568 ~~g~~~Pli~hl~vteag~~e~-~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~rlR~~kte 641 (741)
+.....||.+||. ++.+ -.|+-|+.. |+ +-|++..|..|.++.......+.+.+.-+.-.+|
T Consensus 73 ~~~~~vPV~lHLD-----Hg~~~e~i~~ai~~------Gf-tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 73 DLNITIPVAIHLD-----HGSSFEKCKEAIDA------GF-TSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred HcCCCCCEEEECC-----CCCCHHHHHHHHHc------CC-CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
No 481
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=31.74 E-value=2.2e+02 Score=31.39 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCC----------CcHHHHhhcCCCchHHHHHHHHHHHHHHH-CCCCceE
Q 004623 210 QKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS----------LSDRIMSYYGDSPRGMVESAFEFARICRK-LDFHNFL 278 (741)
Q Consensus 210 ~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS----------L~~~il~~yg~t~~amVeSAle~~~i~e~-~~F~div 278 (741)
.+|+++|.+.|..-.+.|++.|.-. |=+|.|- +..+--++||.+.+.=..=++|-++-.++ .|-+ +
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDg-Veih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~- 220 (338)
T cd02933 144 TEEIPGIVADFRQAARNAIEAGFDG-VEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-R- 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCE-EEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-c-
Q ss_pred EEEecCChhH--------HHHHHHHHHHHhhcCCCCc
Q 004623 279 FSMKASNPVV--------MVQAYRLLVAEMYVHGWDY 307 (741)
Q Consensus 279 iS~KaSnv~~--------~i~Ayrlla~~m~~~g~dy 307 (741)
|++|-|-... +.+-+..+++.+++.|+||
T Consensus 221 v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~ 257 (338)
T cd02933 221 VGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAY 257 (338)
T ss_pred eEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcE
No 482
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=31.64 E-value=1.4e+02 Score=32.16 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCCEEEEec-------CCHHHHHHHHHHHHhhccCCcccceeeccCC-CHHHHHHHhhh-cCceee
Q 004623 120 TVEEVMRIADQGADLVRITV-------QGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC-FDKIRV 187 (741)
Q Consensus 120 tv~Qi~~L~~aGceiVRvav-------p~~~~A~al~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~~-vdkiRI 187 (741)
+.+..++++++|++.|-++- -+......+.+|++.+.. ++|+|||--+ ++.-+.+|+.. ++.|=|
T Consensus 182 s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 182 TPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGG---RIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcC---CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45678899999999998742 134568889999886432 5999999766 45666666665 776654
No 483
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.42 E-value=6.9e+02 Score=28.26 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCceEEE---EecCChhHHHHHHHHHHHH
Q 004623 265 FARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 265 ~~~i~e~~~F~diviS---~KaSnv~~~i~Ayrlla~~ 299 (741)
++...-++|++-+-+- +||.||..|-+|.++-.+.
T Consensus 263 da~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 263 DAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 3444456888765432 5999999999999986654
No 484
>PRK00208 thiG thiazole synthase; Reviewed
Probab=31.42 E-value=7.2e+02 Score=27.15 Aligned_cols=145 Identities=19% Similarity=0.338 Sum_probs=83.5
Q ss_pred ccCCCC-CCHHHHHHHHHHHHH--cCCCEEEEecCCH------HHHHHHHHHHHhhccCCcc-cceeeccCCCHHHHHHH
Q 004623 109 MTTNDT-KDVAGTVEEVMRIAD--QGADLVRITVQGK------READACFEIKNSLVQKNYN-IPLVADIHFAPSVALRV 178 (741)
Q Consensus 109 Mt~t~T-~Dv~atv~Qi~~L~~--aGceiVRvavp~~------~~A~al~~I~~~L~~~~~~-iPLVADIHF~~~lAl~a 178 (741)
|-||.- +..+..|. +-+|++ .|.+.|-+-|-.. +-.+.++.- +.|.++|+. +|.++| |+..|.+.
T Consensus 66 lpNTaG~~ta~eAv~-~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa-~~L~~~Gf~vlpyc~~---d~~~ak~l 140 (250)
T PRK00208 66 LPNTAGCRTAEEAVR-TARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAA-EILVKEGFVVLPYCTD---DPVLAKRL 140 (250)
T ss_pred CCCCCCCCCHHHHHH-HHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHH-HHHHHCCCEEEEEeCC---CHHHHHHH
Confidence 455553 33444433 222322 3779999986442 122223332 235556877 789888 66777666
Q ss_pred hhh-cCceeeCC--CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCc
Q 004623 179 AEC-FDKIRVNP--GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (741)
Q Consensus 179 ~~~-vdkiRINP--GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~ 255 (741)
.+. ++-| -| -=||++.. ..+.+| ++.+++. .++|+=++-.- .+|
T Consensus 141 ~~~G~~~v--mPlg~pIGsg~g------i~~~~~----------i~~i~e~---~~vpVIveaGI------------~tp 187 (250)
T PRK00208 141 EEAGCAAV--MPLGAPIGSGLG------LLNPYN----------LRIIIEQ---ADVPVIVDAGI------------GTP 187 (250)
T ss_pred HHcCCCEe--CCCCcCCCCCCC------CCCHHH----------HHHHHHh---cCCeEEEeCCC------------CCH
Confidence 665 7777 77 66776532 112222 2223222 36777555422 344
Q ss_pred hHHHHHHHHHHHHHHHCCCCceEEE---EecCChhHHHHHHHHHHHH
Q 004623 256 RGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 256 ~amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~i~Ayrlla~~ 299 (741)
+++..+-++|++-+++. .|+.|+..|.++++.-.+.
T Consensus 188 --------eda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 188 --------SDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred --------HHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 23444445899888764 5999999999999887665
No 485
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.39 E-value=8.5e+02 Score=27.96 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=44.7
Q ss_pred HHHHHHhcC---CeEEEeeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHC--CC---CceEEEEecCChhHHHHHHH
Q 004623 223 LVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL--DF---HNFLFSMKASNPVVMVQAYR 294 (741)
Q Consensus 223 vv~~ake~g---~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~--~F---~diviS~KaSnv~~~i~Ayr 294 (741)
+++..++.+ .-+=||+-|| ++++|++++-.- -++..++.++.+.+. |+ .+|++=. +.++.+.++
T Consensus 257 ll~~m~~~~~gc~~l~iglQSg--sd~vLk~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~d~IvGf----PgET~edf~ 328 (455)
T PRK14335 257 LIATIAQESRLCRLVHLPVQHG--SNGVLKRMNRSY--TREHYLSLVGKLKASIPNVALSTDILIGF----PGETEEDFE 328 (455)
T ss_pred HHHHHHhCCCCCCeEEEccCcC--CHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEeC----CCCCHHHHH
Confidence 556555532 3456677666 588898876311 146666777777776 65 3555555 445555555
Q ss_pred HHHHHhhcCCCCc
Q 004623 295 LLVAEMYVHGWDY 307 (741)
Q Consensus 295 lla~~m~~~g~dy 307 (741)
...+-+.+.+.++
T Consensus 329 ~Tl~~i~~l~~~~ 341 (455)
T PRK14335 329 QTLDLMREVEFDS 341 (455)
T ss_pred HHHHHHHhcCCCe
Confidence 5555554444443
No 486
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=31.34 E-value=1e+02 Score=33.09 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCccccee-------eccCCCHHHHHHHhhhcCceeeCC
Q 004623 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV-------ADIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLV-------ADIHF~~~lAl~a~~~vdkiRINP 189 (741)
.+..++..+++++|||+.+=+-.... +..++|.++ .++|+| .|-++-- .-|=+=++|
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v~~---~~~~~i~~~-----v~iP~igiGaG~~~dgqvlv--------~~D~lG~~~ 220 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECVPA---ELAKEITEA-----LSIPTIGIGAGPDCDGQVLV--------WHDMLGLSP 220 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCH---HHHHHHHHh-----CCCCEEEeccCCCCCceeeh--------HHhhcCCCC
Confidence 68999999999999999999977753 466778886 789999 3433310 011133444
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcC
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG 231 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g 231 (741)
+.. .+|- ..|....+.+.+.+++.++..|+..
T Consensus 221 ~~~----p~f~------k~~~~~~~~~~~a~~~y~~~v~~~~ 252 (254)
T cd06557 221 GFK----PKFV------KRYADLGELIREAVKAYVEEVKSGS 252 (254)
T ss_pred CCC----CCcH------HHHhhhHHHHHHHHHHHHHHHhcCC
Confidence 421 1232 3477777778888888887777643
No 487
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=31.19 E-value=4e+02 Score=27.75 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHhhccCCcccceeeccC-CCHHHHHH-Hhhh-cCc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQKNYNIPLVADIH-FAPSVALR-VAEC-FDK 184 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~-------~~A~al~~I~~~L~~~~~~iPLVADIH-F~~~lAl~-a~~~-vdk 184 (741)
.|.-.--+|+.+|.++|++.+=+-+-|- .-.+.+++|++. .-++|+-+++| .++...++ ++++ +|-
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~----~~~~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKH----LPNTFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhc----CCCCCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 4555666899999999999998875442 334555666653 33788855555 33544443 3333 554
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcCCCchHHHHHHHH
Q 004623 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (741)
Q Consensus 185 iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle 264 (741)
|=+-.-. + ...+.+.++.+|++|+-+=|.+| -+.+.+.+..|=+ ...++..+
T Consensus 92 itvH~ea-~-----------------------~~~~~~~l~~ik~~G~~~gval~-p~t~~e~l~~~l~--~~~vD~Vl- 143 (228)
T PTZ00170 92 FTFHIEA-T-----------------------EDDPKAVARKIREAGMKVGVAIK-PKTPVEVLFPLID--TDLVDMVL- 143 (228)
T ss_pred EEEeccC-C-----------------------chHHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHHHHc--cchhhhHH-
Confidence 4442211 0 01256689999999965444455 3345555555511 12222222
Q ss_pred HHHHHHHCCCCceEEE
Q 004623 265 FARICRKLDFHNFLFS 280 (741)
Q Consensus 265 ~~~i~e~~~F~diviS 280 (741)
-+...-||+...++
T Consensus 144 --~m~v~pG~~gq~~~ 157 (228)
T PTZ00170 144 --VMTVEPGFGGQSFM 157 (228)
T ss_pred --hhhcccCCCCcEec
Confidence 25666788765543
No 488
>PRK13190 putative peroxiredoxin; Provisional
Probab=31.13 E-value=1.8e+02 Score=29.49 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=39.7
Q ss_pred CceEEEec--cCCC--CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHhhccCCcccceeeccC
Q 004623 102 HPIRVQTM--TTND--TKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLVQKNYNIPLVADIH 169 (741)
Q Consensus 102 ~PI~VQSM--t~t~--T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~a-l~~I~~~L~~~~~~iPLVADIH 169 (741)
.++.+-+- +-|. +..+.+-.+-..++.+.||++|-|++.+.+...+ ++.+++... ...+.|+++|-.
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g-~~~~fPll~D~~ 99 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFG-IKIPFPVIADID 99 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcC-CCceEEEEECCC
Confidence 45666543 2233 2333333334445667899999999988765433 455655321 125789999964
No 489
>PRK06801 hypothetical protein; Provisional
Probab=31.12 E-value=5.1e+02 Score=28.39 Aligned_cols=168 Identities=13% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhcc--CCcccceeeccCCC----HHHHHHHhhh-cCce
Q 004623 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQ--KNYNIPLVADIHFA----PSVALRVAEC-FDKI 185 (741)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~--~~~~iPLVADIHF~----~~lAl~a~~~-vdki 185 (741)
+..|.+-+..=|..-++.++-++==..|+...-..+..+..-+++ +.+++|++ +|+| ...+.+|++. +..|
T Consensus 24 n~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~--lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 24 NVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVV--LNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred eeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEE--EECCCCCCHHHHHHHHHhCCcEE
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeE--EEeeccCCCcHHHHhhcCCCchHHHHHHH
Q 004623 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (741)
Q Consensus 186 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I--RIGvN~GSL~~~il~~yg~t~~amVeSAl 263 (741)
=| |.. ..+|++-++.-++ +++.|+.+|+++ -+|. -|.-+..+ ..++....+--..-
T Consensus 102 m~------D~S---------~l~~eeNi~~t~~----v~~~a~~~gv~VE~ElG~-vgg~e~~v--~~~~~~~~~~T~pe 159 (286)
T PRK06801 102 MF------DGS---------TLEYEENVRQTRE----VVKMCHAVGVSVEAELGA-VGGDEGGA--LYGEADSAKFTDPQ 159 (286)
T ss_pred EE------cCC---------CCCHHHHHHHHHH----HHHHHHHcCCeEEeecCc-ccCCCCCc--ccCCcccccCCCHH
Q ss_pred HHHHHHHHCCCCceEEEE-----ecCC-hhHHHHHHHHHHHHhhcCCCCccc
Q 004623 264 EFARICRKLDFHNFLFSM-----KASN-PVVMVQAYRLLVAEMYVHGWDYPL 309 (741)
Q Consensus 264 e~~~i~e~~~F~diviS~-----KaSn-v~~~i~Ayrlla~~m~~~g~dyPL 309 (741)
+-.+..++.|-+-+.+|+ |... +..-.+-.+.+.+. .+.||
T Consensus 160 ~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~-----~~~PL 206 (286)
T PRK06801 160 LARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ-----TGLPL 206 (286)
T ss_pred HHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh-----cCCCE
No 490
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=31.07 E-value=19 Score=31.76 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=11.8
Q ss_pred ceeecCCCCccccc
Q 004623 640 TEYVSCPSCGRTLF 653 (741)
Q Consensus 640 te~ISCPsCGRTlf 653 (741)
.-.|.|++||+||.
T Consensus 36 st~V~C~~CG~~l~ 49 (67)
T COG2051 36 STVVTCLICGTTLA 49 (67)
T ss_pred ceEEEecccccEEE
Confidence 46799999999975
No 491
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.02 E-value=54 Score=34.51 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCeEEEeeccC
Q 004623 220 FSPLVEKCKKYGRAVRIGTNHG 241 (741)
Q Consensus 220 ~~~vv~~ake~g~~IRIGvN~G 241 (741)
|+++++.|||+++|.=| |.+|
T Consensus 78 fKef~e~ike~di~fiV-vSsG 98 (220)
T COG4359 78 FKEFVEWIKEHDIPFIV-VSSG 98 (220)
T ss_pred HHHHHHHHHHcCCCEEE-EeCC
Confidence 78899999999999833 4344
No 492
>PRK06354 pyruvate kinase; Provisional
Probab=31.00 E-value=2.6e+02 Score=33.61 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhhcc-CCcccceeeccCCCHHHHHHHhh----hcCceeeCCCC
Q 004623 118 AGTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQ-KNYNIPLVADIHFAPSVALRVAE----CFDKIRVNPGN 191 (741)
Q Consensus 118 ~atv~Qi~~L~~aGceiVRva-vp~~~~A~al~~I~~~L~~-~~~~iPLVADIHF~~~lAl~a~~----~vdkiRINPGN 191 (741)
+.-.+-|+-..+.|+|+|=++ |.+.++. .++++.|.+ .+.+++++|=|-= .-|++-++ .+|.|=|-||.
T Consensus 178 ekD~~di~f~~~~~vD~ia~SFVr~~~dv---~~~r~~l~~~~~~~~~iiaKIEt--~eav~nldeI~~~~DgImVaRGD 252 (590)
T PRK06354 178 EKDREDLIFGLEQGVDWIALSFVRNPSDV---LEIRELIEEHNGKHIPIIAKIEK--QEAIDNIDAILELCDGLMVARGD 252 (590)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHH---HHHHHHHHHhcCCCceEEEEECC--HHHHHhHHHHHHhcCEEEEccch
Confidence 333444666678899998777 5555554 455555523 3668999998854 44554443 39999999999
Q ss_pred CCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEEeeccCCCcHHHHhhcC--CCc--hHHHHHHHHHHH
Q 004623 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSP--RGMVESAFEFAR 267 (741)
Q Consensus 192 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~--~amVeSAle~~~ 267 (741)
+|-.- ..+++....++++++|+++|+|+=+.++ +|+..- +.| ..+ --+-
T Consensus 253 Lgve~---------------g~e~v~~~qk~ii~~~~~~gkpvI~ATq-------mLeSM~~~p~PTRAEv-----sDVa 305 (590)
T PRK06354 253 LGVEI---------------PAEEVPLLQKRLIKKANRLGKPVITATQ-------MLDSMQRNPRPTRAEA-----SDVA 305 (590)
T ss_pred hhccc---------------CcHHHHHHHHHHHHHHHHcCCCEEEEch-------hHHHHhhCCCCCchhh-----HHHH
Confidence 98632 1456666778899999999999976663 344432 122 111 0111
Q ss_pred HHHHCCCCceEEEE---ecCChhHHHHHHHHHHHHhhc
Q 004623 268 ICRKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYV 302 (741)
Q Consensus 268 i~e~~~F~diviS~---KaSnv~~~i~Ayrlla~~m~~ 302 (741)
-+---|.+-+.+|- +--.|...|+.-+.++++.++
T Consensus 306 Nav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~ 343 (590)
T PRK06354 306 NAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEK 343 (590)
T ss_pred HHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHh
Confidence 12235889999984 445688889999999888765
No 493
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=30.87 E-value=3e+02 Score=30.90 Aligned_cols=67 Identities=18% Similarity=0.372 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--C-----------------------------------HHHHHHHHHHHHhhcc
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQ--G-----------------------------------KREADACFEIKNSLVQ 157 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp--~-----------------------------------~~~A~al~~I~~~L~~ 157 (741)
.+.+..++++.++.+.|..-+.+-+- + .++.+.+..|++.
T Consensus 126 ~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~--- 202 (404)
T PRK15072 126 RDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK--- 202 (404)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh---
Confidence 46788889999999999999999752 1 1123556666663
Q ss_pred CCcccceeeccCCCH--HHHHHHhhhcCc
Q 004623 158 KNYNIPLVADIHFAP--SVALRVAECFDK 184 (741)
Q Consensus 158 ~~~~iPLVADIHF~~--~lAl~a~~~vdk 184 (741)
.|-++.|..|.|..+ .-|++.++.++.
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~ 231 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEP 231 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccc
Confidence 345789999988655 445555555554
No 494
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=30.86 E-value=5.1e+02 Score=29.07 Aligned_cols=150 Identities=18% Similarity=0.279 Sum_probs=86.2
Q ss_pred HHHHHcCCCEEEEec---------CCHHHHHHHHHHHHhhccCCcccceeeccCCCHHHHHHHhhhcCceeeCCCCCCch
Q 004623 125 MRIADQGADLVRITV---------QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADR 195 (741)
Q Consensus 125 ~~L~~aGceiVRvav---------p~~~~A~al~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~ 195 (741)
.-|.+.|+..||+-+ .|.+.+.++.+ |-.+.| +-+.=|+||.-.-| -||+=--+
T Consensus 31 ~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~ak---rak~~G--m~vlldfHYSD~Wa------------DPg~Q~~P 93 (332)
T PF07745_consen 31 QILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAK---RAKAAG--MKVLLDFHYSDFWA------------DPGKQNKP 93 (332)
T ss_dssp HHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHH---HHHHTT---EEEEEE-SSSS--------------BTTB-B--
T ss_pred HHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHH---HHHHCC--CeEEEeecccCCCC------------CCCCCCCC
Confidence 346789999999974 33444433332 223334 66778999976555 45543221
Q ss_pred hhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEE---Ee--eccCCCcHHHHhhcCC-----CchHHHHHHHHH
Q 004623 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR---IG--TNHGSLSDRIMSYYGD-----SPRGMVESAFEF 265 (741)
Q Consensus 196 ~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR---IG--vN~GSL~~~il~~yg~-----t~~amVeSAle~ 265 (741)
+-|+.. .+++-.+.|.+-.+.++++-|+.|+... || +|.|=|-+. |. .-.+|+.|+.+-
T Consensus 94 -~aW~~~-----~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~-----g~~~~~~~~a~ll~ag~~A 162 (332)
T PF07745_consen 94 -AAWANL-----SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPD-----GKPSNWDNLAKLLNAGIKA 162 (332)
T ss_dssp -TTCTSS-----SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTT-----TCTT-HHHHHHHHHHHHHH
T ss_pred -ccCCCC-----CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcC-----CCccCHHHHHHHHHHHHHH
Confidence 224433 4556667888899999999999999865 56 777777421 21 125677777777
Q ss_pred HHHHHHCCCCceEEEEecCChhHHHHHHHHHHHHhhcCCCCc
Q 004623 266 ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDY 307 (741)
Q Consensus 266 ~~i~e~~~F~diviS~KaSnv~~~i~Ayrlla~~m~~~g~dy 307 (741)
+|- -..+++|-+=-.++.. ...|+-+...|.+.|.||
T Consensus 163 Vr~----~~p~~kV~lH~~~~~~-~~~~~~~f~~l~~~g~d~ 199 (332)
T PF07745_consen 163 VRE----VDPNIKVMLHLANGGD-NDLYRWFFDNLKAAGVDF 199 (332)
T ss_dssp HHT----HSSTSEEEEEES-TTS-HHHHHHHHHHHHHTTGG-
T ss_pred HHh----cCCCCcEEEEECCCCc-hHHHHHHHHHHHhcCCCc
Confidence 664 4455555554444443 367788888887777654
No 495
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=30.59 E-value=4.6e+02 Score=27.86 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=70.5
Q ss_pred cceeeccCCCHHHHHHHh----hh-cCceeeCCCCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCCeEEE
Q 004623 162 IPLVADIHFAPSVALRVA----EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (741)
Q Consensus 162 iPLVADIHF~~~lAl~a~----~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 236 (741)
+|.=.|-..|+..-..-+ +. ++.|=+| |..|.. ...|++|+.+-++. +++.++ -++||=.
T Consensus 11 TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~------~~ls~~Er~~~~~~-------~~~~~~-~~~~vi~ 75 (292)
T PRK03170 11 TPFKEDGSVDFAALRKLVDYLIANGTDGLVVV-GTTGES------PTLTHEEHEELIRA-------VVEAVN-GRVPVIA 75 (292)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEC-CcCCcc------ccCCHHHHHHHHHH-------HHHHhC-CCCcEEe
Confidence 455566666665444333 33 7777775 877752 23566666554333 344443 3578878
Q ss_pred eeccCCCcHHHHhhcCCCchHHHHHHHHHHHHHHHCCCCceEEEE----ecCChhHHHHHHHHHHHH
Q 004623 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAE 299 (741)
Q Consensus 237 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~i~Ayrlla~~ 299 (741)
||.+.|. +.+++.++.+++.|++-+.+.. +.| ...+++-|+.+++.
T Consensus 76 gv~~~~~----------------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~-~~~i~~~~~~ia~~ 125 (292)
T PRK03170 76 GTGSNST----------------AEAIELTKFAEKAGADGALVVTPYYNKPT-QEGLYQHFKAIAEA 125 (292)
T ss_pred ecCCchH----------------HHHHHHHHHHHHcCCCEEEECCCcCCCCC-HHHHHHHHHHHHhc
Confidence 8866665 5678899999999999998843 334 47899999999987
No 496
>PRK13189 peroxiredoxin; Provisional
Probab=30.55 E-value=1e+02 Score=31.88 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=43.4
Q ss_pred CceEEEeccC--C--CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHhhccCCcccceeeccC
Q 004623 102 HPIRVQTMTT--N--DTKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLVQKNYNIPLVADIH 169 (741)
Q Consensus 102 ~PI~VQSMt~--t--~T~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~a-l~~I~~~L~~~~~~iPLVADIH 169 (741)
.++.+=+... | -+..+.+-.+...++.+.||+++=|++.+..+..+ +..+++.+ ..+++.|+++|-.
T Consensus 36 k~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~-g~~i~fPllsD~~ 107 (222)
T PRK13189 36 KWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKL-GVEIEFPIIADDR 107 (222)
T ss_pred CeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhc-CcCcceeEEEcCc
Confidence 3555544422 2 23444455556667788999999999999877655 44565532 1247889999965
No 497
>PRK13599 putative peroxiredoxin; Provisional
Probab=30.55 E-value=1.1e+02 Score=31.59 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHH-HHHHHhhccCCcccceeeccCC
Q 004623 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADAC-FEIKNSLVQKNYNIPLVADIHF 170 (741)
Q Consensus 115 ~Dv~atv~Qi~~L~~aGceiVRvavp~~~~A~al-~~I~~~L~~~~~~iPLVADIHF 170 (741)
....+-.+-..++.+.||++|-|++.+..+-.+. ..|++. ...+++.|+++|-+-
T Consensus 46 ~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~-~~~~i~fPil~D~~~ 101 (215)
T PRK13599 46 TEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN-TNIAIPFPVIADDLG 101 (215)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh-cCCCCceeEEECCCc
Confidence 3334444455566778999999999998766554 446652 234678999999543
No 498
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=30.51 E-value=1.1e+02 Score=33.01 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhccCCcccceee-------ccCCCHHHHHHHhhhcCceeeCC
Q 004623 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA-------DIHFAPSVALRVAECFDKIRVNP 189 (741)
Q Consensus 117 v~atv~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~L~~~~~~iPLVA-------DIHF~~~lAl~a~~~vdkiRINP 189 (741)
.+..+++.+++++|||+.|=+-.... +..+.|.+. .++|+|. |-++-- .-|=+=+++
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v~~---~~~~~i~~~-----l~iP~igiGaG~~~dgqvlv--------~~D~lG~~~ 223 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECVPA---ELAKEITEA-----LSIPTIGIGAGPDCDGQVLV--------WHDMLGLFS 223 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCH---HHHHHHHHh-----CCCCEEEeccCCCCCceeee--------HHhhcCCCC
Confidence 78999999999999999999976644 355667775 7899983 322210 001112233
Q ss_pred CCCCchhhhccccccchHHHHHHHHhHHHhHHHHHHHHHhcCC
Q 004623 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 232 (741)
Q Consensus 190 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 232 (741)
+. .-+|- ..|....+.+.+.++..++..|...-
T Consensus 224 ~~----~pkf~------k~~~~~~~~~~~a~~~y~~~V~~~~f 256 (264)
T PRK00311 224 GF----KPKFV------KRYADLAGSIREAVKAYVAEVKSGSF 256 (264)
T ss_pred CC----CCCch------HhHhhhHHHHHHHHHHHHHHHhCCCC
Confidence 32 11232 34677777777777777777766443
No 499
>PRK06382 threonine dehydratase; Provisional
Probab=30.42 E-value=5.4e+02 Score=28.95 Aligned_cols=166 Identities=16% Similarity=0.232 Sum_probs=88.5
Q ss_pred ceeEEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeccccCCCCCcchhhHHH
Q 004623 516 TRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAG 595 (741)
Q Consensus 516 ~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~L~~~g~~~Pli~hl~vteag~~e~~~IkSa 595 (741)
.++.++.-...+.+.++.++....-|++.. + ..++..++.+++.++. +++.++... ..
T Consensus 97 ~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~----~----~~~~a~~~a~~la~~~-~~~~v~~~~--~~----------- 154 (406)
T PRK06382 97 IDAKIVMPEYTIPQKVNAVEAYGAHVILTG----R----DYDEAHRYADKIAMDE-NRTFIEAFN--DR----------- 154 (406)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCEEEEEC----C----CHHHHHHHHHHHHHhc-CCEecCccC--Ch-----------
Confidence 455566655666677777887776666544 1 2344445555554432 233332211 00
Q ss_pred HHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhcccCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEE
Q 004623 596 TNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIA 675 (741)
Q Consensus 596 ~~iG~LL~DGiGDtIrvsl~~~~~~ei~~~~~~ILQa~rlR~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIA 675 (741)
...+-...++++|++.++ .+++|-||..|=. +..-+-..+..+. -.+-
T Consensus 155 ---------------------~~i~g~~t~~~Ei~eq~~----~~d~vvvpvG~GG------~~~Gv~~~~k~~~-p~~~ 202 (406)
T PRK06382 155 ---------------------WVISGQGTIGLEIMEDLP----DLDQIIVPVGGGG------LISGIALAAKHIN-PNVK 202 (406)
T ss_pred ---------------------HHHHHHHHHHHHHHHhcC----CCCEEEEeeChHH------HHHHHHHHHHHhC-CCCE
Confidence 000111246888888875 4788888876643 3333333333332 1234
Q ss_pred EeeeeecCCCCCC------------CCce---eeecCCCceeEe-----eecceeeeecCChhHHHHHHHHHHHhccccC
Q 004623 676 IMGCIVNGPGEMA------------DADF---GYVGGAPGKIDL-----YVGKTVVKRGIAMEQATDALIQLIKDHGRWA 735 (741)
Q Consensus 676 VMGCIVNGPGEma------------DAD~---GyvGg~pGki~L-----Y~gke~V~r~Ipeeeavd~Li~lIk~~g~W~ 735 (741)
|.|+-..|--.|. ..+. |+.-+.|+...+ |.+ .+|. |+++|+++....+.+..|-.+
T Consensus 203 vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d-~~v~--V~d~ei~~a~~~l~~~~gi~~ 279 (406)
T PRK06382 203 IIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVD-DIVT--VTEESVSKAIYKLFEREKIVA 279 (406)
T ss_pred EEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCC-EEEE--ECHHHHHHHHHHHHHHcCcee
Confidence 4555555543221 1110 222223343321 233 4555 899999999999999999888
Q ss_pred CCC
Q 004623 736 EPP 738 (741)
Q Consensus 736 dp~ 738 (741)
+|.
T Consensus 280 eps 282 (406)
T PRK06382 280 EPS 282 (406)
T ss_pred chH
Confidence 873
No 500
>PLN02537 diaminopimelate decarboxylase
Probab=30.40 E-value=6.4e+02 Score=28.17 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh
Q 004623 122 EEVMRIADQGADLVRITVQGKREADACFEIKNS 154 (741)
Q Consensus 122 ~Qi~~L~~aGceiVRvavp~~~~A~al~~I~~~ 154 (741)
+++....+.|. ++++.+.++.+.+.++.++
T Consensus 100 ~~l~~a~~~gv---~i~ids~~el~~l~~~a~~ 129 (410)
T PLN02537 100 EDLVLAAQEGV---FVNVDSEFDLENIVEAARI 129 (410)
T ss_pred HHHHHHHHCCC---EEEECCHHHHHHHHHHHHh
Confidence 45556666663 5788888888877777664
Done!