Query 004624
Match_columns 741
No_of_seqs 315 out of 694
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 1E-178 3E-183 1504.1 64.6 671 8-729 2-716 (719)
2 PF07059 DUF1336: Protein of u 100.0 1E-73 2.2E-78 586.6 18.2 207 511-718 1-227 (227)
3 cd08904 START_STARD6-like Lipi 100.0 1.7E-33 3.7E-38 285.5 22.7 176 172-356 20-202 (204)
4 cd08868 START_STARD1_3_like Ch 100.0 1.3E-30 2.9E-35 264.3 24.0 179 170-359 20-207 (208)
5 cd08873 START_STARD14_15-like 100.0 1.1E-30 2.5E-35 269.3 21.1 174 144-329 21-206 (235)
6 cd08914 START_STARD15-like Lip 100.0 6.7E-31 1.5E-35 270.6 19.3 175 148-336 26-213 (236)
7 cd08906 START_STARD3-like Chol 100.0 2.5E-30 5.4E-35 263.5 21.8 183 166-359 17-208 (209)
8 cd08869 START_RhoGAP C-termina 100.0 6.3E-30 1.4E-34 258.1 22.8 173 172-359 17-196 (197)
9 cd08913 START_STARD14-like Lip 100.0 4.3E-30 9.2E-35 266.4 19.6 186 145-342 26-224 (240)
10 cd08902 START_STARD4-like Lipi 100.0 6.5E-30 1.4E-34 256.2 19.4 174 172-357 21-201 (202)
11 cd08903 START_STARD5-like Lipi 100.0 2.2E-29 4.9E-34 256.2 23.0 178 172-358 20-206 (208)
12 cd08867 START_STARD4_5_6-like 100.0 2.9E-29 6.3E-34 254.2 22.5 177 172-357 20-205 (206)
13 cd08874 START_STARD9-like C-te 100.0 2.1E-29 4.5E-34 256.0 21.0 184 163-359 11-205 (205)
14 cd08909 START_STARD13-like C-t 100.0 1.6E-29 3.5E-34 256.2 20.0 171 174-358 27-203 (205)
15 cd08907 START_STARD8-like C-te 100.0 1.2E-28 2.5E-33 247.6 17.8 174 171-358 24-203 (205)
16 cd08905 START_STARD1-like Chol 100.0 6E-28 1.3E-32 245.9 19.5 178 171-359 22-208 (209)
17 cd08871 START_STARD10-like Lip 100.0 1.6E-27 3.4E-32 244.2 21.4 168 169-347 18-193 (222)
18 smart00234 START in StAR and p 99.9 2.5E-26 5.3E-31 230.8 23.2 171 169-348 14-194 (206)
19 PF01852 START: START domain; 99.9 1.1E-25 2.4E-30 225.5 24.0 184 170-361 15-204 (206)
20 cd08872 START_STARD11-like Cer 99.9 9.5E-26 2.1E-30 233.8 21.5 177 173-362 25-229 (235)
21 cd08911 START_STARD7-like Lipi 99.9 1.4E-25 3E-30 228.2 21.3 173 172-356 19-203 (207)
22 cd08908 START_STARD12-like C-t 99.9 6.2E-26 1.3E-30 230.2 18.3 170 174-358 27-202 (204)
23 cd00177 START Lipid-binding ST 99.9 1.1E-23 2.3E-28 206.6 23.0 151 174-334 15-171 (193)
24 cd08910 START_STARD2-like Lipi 99.9 2.8E-24 6E-29 218.8 19.3 172 172-357 23-204 (207)
25 cd08870 START_STARD2_7-like Li 99.9 2.7E-23 5.9E-28 211.5 22.2 171 174-357 22-206 (209)
26 cd08876 START_1 Uncharacterize 99.9 3E-23 6.4E-28 207.2 22.0 175 169-357 12-194 (195)
27 cd08877 START_2 Uncharacterize 99.9 5E-22 1.1E-26 202.7 17.5 181 165-358 13-213 (215)
28 KOG2761 START domain-containin 99.8 3.2E-17 7E-22 165.9 17.9 157 170-335 25-192 (219)
29 cd01251 PH_centaurin_alpha Cen 99.5 1.3E-13 2.9E-18 125.9 10.7 98 12-117 1-101 (103)
30 cd08875 START_ArGLABRA2_like C 99.4 1.9E-12 4.2E-17 133.5 16.6 126 203-331 59-200 (229)
31 cd01260 PH_CNK Connector enhan 99.4 4.6E-13 1E-17 119.8 10.6 95 11-115 1-96 (96)
32 cd01246 PH_oxysterol_bp Oxyste 99.4 1.9E-12 4E-17 113.2 10.7 91 12-115 1-91 (91)
33 cd01265 PH_PARIS-1 PARIS-1 ple 99.3 6.5E-12 1.4E-16 113.1 10.4 91 12-115 1-93 (95)
34 cd01257 PH_IRS Insulin recepto 99.3 1.9E-11 4.2E-16 111.6 10.9 91 10-114 2-100 (101)
35 cd01238 PH_Tec Tec pleckstrin 99.3 1.6E-11 3.5E-16 112.7 10.4 99 12-114 2-105 (106)
36 cd01233 Unc104 Unc-104 pleckst 99.3 2.1E-11 4.6E-16 110.7 10.6 96 10-116 2-98 (100)
37 PF00169 PH: PH domain; Inter 99.2 4.7E-11 1E-15 104.5 10.5 100 11-116 2-103 (104)
38 cd01252 PH_cytohesin Cytohesin 99.2 6.2E-11 1.3E-15 111.6 11.8 97 11-118 1-115 (125)
39 cd01247 PH_GPBP Goodpasture an 99.2 7.3E-11 1.6E-15 105.7 10.6 90 12-114 1-90 (91)
40 cd01235 PH_SETbf Set binding f 99.2 8.3E-11 1.8E-15 105.6 10.8 95 12-116 1-101 (101)
41 cd01250 PH_centaurin Centaurin 99.2 1.3E-10 2.8E-15 102.2 10.1 94 12-115 1-94 (94)
42 smart00233 PH Pleckstrin homol 99.2 3E-10 6.6E-15 97.4 11.9 100 11-116 2-101 (102)
43 cd01266 PH_Gab Gab (Grb2-assoc 99.2 1.4E-10 3E-15 106.7 10.2 96 13-115 2-107 (108)
44 cd01264 PH_melted Melted pleck 99.2 2E-10 4.2E-15 105.0 10.3 98 12-115 2-100 (101)
45 cd08864 SRPBCC_DUF3074 DUF3074 99.2 3.4E-10 7.5E-15 115.9 13.3 101 232-335 76-186 (208)
46 cd01236 PH_outspread Outspread 99.1 2.8E-10 6.2E-15 104.5 9.9 94 12-113 1-101 (104)
47 cd01241 PH_Akt Akt pleckstrin 99.1 3.2E-10 7E-15 103.4 10.0 95 10-115 1-101 (102)
48 cd01263 PH_anillin Anillin Ple 99.0 1.4E-09 3.1E-14 102.6 9.5 104 10-115 1-122 (122)
49 KOG0930 Guanine nucleotide exc 98.9 2.4E-09 5.1E-14 111.5 8.7 97 9-117 259-376 (395)
50 cd01254 PH_PLD Phospholipase D 98.9 4.7E-09 1E-13 98.8 9.5 97 12-115 1-121 (121)
51 cd01256 PH_dynamin Dynamin ple 98.9 8.6E-09 1.9E-13 92.8 9.3 95 12-115 3-104 (110)
52 cd01245 PH_RasGAP_CG5898 RAS G 98.9 4.6E-09 1E-13 95.6 7.6 92 13-114 2-97 (98)
53 cd01253 PH_beta_spectrin Beta- 98.8 2.6E-08 5.7E-13 90.4 10.9 97 12-115 1-104 (104)
54 cd01219 PH_FGD FGD (faciogenit 98.8 3.5E-08 7.6E-13 89.9 10.8 97 11-118 3-101 (101)
55 cd00900 PH-like Pleckstrin hom 98.8 3.3E-08 7.1E-13 84.7 9.9 97 12-115 1-99 (99)
56 KOG1739 Serine/threonine prote 98.8 6.3E-09 1.4E-13 114.9 5.9 161 166-333 395-578 (611)
57 cd00821 PH Pleckstrin homology 98.8 3.1E-08 6.7E-13 84.1 8.6 96 12-115 1-96 (96)
58 PF15413 PH_11: Pleckstrin hom 98.8 2.1E-08 4.5E-13 93.2 7.8 95 12-115 1-112 (112)
59 cd01237 Unc112 Unc-112 pleckst 98.8 2.5E-08 5.5E-13 91.6 8.0 91 21-116 12-103 (106)
60 cd01244 PH_RasGAP_CG9209 RAS_G 98.7 6E-08 1.3E-12 88.3 9.8 83 23-115 16-98 (98)
61 cd01220 PH_CDEP Chondrocyte-de 98.5 6.7E-07 1.5E-11 81.6 10.3 95 11-117 3-98 (99)
62 cd01230 PH_EFA6 EFA6 Pleckstri 98.3 4.5E-06 9.8E-11 78.5 11.2 99 12-117 2-112 (117)
63 PF15409 PH_8: Pleckstrin homo 98.3 3E-06 6.5E-11 75.9 8.4 85 14-115 1-88 (89)
64 cd07813 COQ10p_like Coenzyme Q 98.0 9.8E-05 2.1E-09 69.6 12.5 128 207-358 2-136 (138)
65 PF11274 DUF3074: Protein of u 98.0 0.00017 3.7E-09 73.0 14.7 119 213-335 13-164 (184)
66 cd08866 SRPBCC_11 Ligand-bindi 97.7 0.0011 2.5E-08 62.4 14.5 135 207-358 2-143 (144)
67 PF15410 PH_9: Pleckstrin homo 97.6 0.00047 1E-08 64.8 9.6 99 12-116 2-118 (119)
68 cd01234 PH_CADPS CADPS (Ca2+-d 97.6 0.00016 3.4E-09 66.3 6.1 95 12-115 4-109 (117)
69 KOG2200 Tumour suppressor prot 97.5 2E-05 4.3E-10 89.7 -0.4 91 257-360 574-665 (674)
70 PF12814 Mcp5_PH: Meiotic cell 97.5 0.0011 2.4E-08 62.7 11.5 101 13-117 12-122 (123)
71 cd01243 PH_MRCK MRCK (myotonic 97.1 0.004 8.6E-08 58.8 10.4 105 10-115 2-118 (122)
72 cd07819 SRPBCC_2 Ligand-bindin 97.1 0.019 4E-07 53.3 14.4 129 205-356 3-139 (140)
73 cd01239 PH_PKD Protein kinase 97.1 0.0027 5.9E-08 59.4 8.4 95 12-115 2-117 (117)
74 cd01242 PH_ROK Rok (Rho- assoc 96.9 0.0085 1.8E-07 55.8 10.3 106 11-117 1-111 (112)
75 cd01224 PH_Collybistin Collybi 96.9 0.016 3.5E-07 54.1 11.7 98 12-114 4-105 (109)
76 cd05018 CoxG Carbon monoxide d 96.8 0.02 4.3E-07 53.4 12.6 137 206-357 3-143 (144)
77 cd01259 PH_Apbb1ip Apbb1ip (Am 96.8 0.0032 7E-08 58.7 6.6 103 11-116 1-108 (114)
78 KOG0690 Serine/threonine prote 96.7 0.0024 5.2E-08 69.4 5.7 99 9-117 14-117 (516)
79 cd01218 PH_phafin2 Phafin2 Pl 96.6 0.02 4.4E-07 53.0 10.3 96 11-118 5-100 (104)
80 cd08861 OtcD1_ARO-CYC_like N-t 96.5 0.043 9.4E-07 51.5 12.1 132 208-358 3-141 (142)
81 KOG3640 Actin binding protein 96.5 0.0054 1.2E-07 73.5 7.1 109 7-118 987-1108(1116)
82 PF15408 PH_7: Pleckstrin homo 96.4 0.0016 3.4E-08 57.8 1.6 94 13-114 1-95 (104)
83 PLN02866 phospholipase D 96.2 0.025 5.4E-07 69.6 10.8 100 11-118 183-309 (1068)
84 PF03364 Polyketide_cyc: Polyk 96.1 0.21 4.5E-06 46.2 14.4 103 212-334 1-112 (130)
85 PTZ00267 NIMA-related protein 96.0 0.014 3E-07 66.7 7.1 100 7-116 374-476 (478)
86 cd01261 PH_SOS Son of Sevenles 95.8 0.069 1.5E-06 50.1 9.8 97 11-117 5-110 (112)
87 cd01249 PH_oligophrenin Oligop 95.6 0.1 2.3E-06 48.3 9.9 93 12-113 1-102 (104)
88 cd01221 PH_ephexin Ephexin Ple 95.5 0.12 2.7E-06 49.4 10.1 96 12-113 5-119 (125)
89 KOG1090 Predicted dual-specifi 95.4 0.0077 1.7E-07 72.4 2.4 92 12-116 1636-1731(1732)
90 cd08860 TcmN_ARO-CYC_like N-te 95.4 0.98 2.1E-05 43.9 16.5 131 208-359 5-144 (146)
91 cd07817 SRPBCC_8 Ligand-bindin 95.0 1.1 2.4E-05 41.4 14.9 132 206-358 2-138 (139)
92 cd07821 PYR_PYL_RCAR_like Pyra 94.9 1.1 2.4E-05 41.0 14.6 53 302-357 87-139 (140)
93 cd01258 PH_syntrophin Syntroph 94.9 0.066 1.4E-06 50.0 6.2 100 13-114 2-107 (108)
94 PRK10724 hypothetical protein; 94.4 1.4 3.1E-05 43.6 14.9 109 204-333 15-129 (158)
95 PF14593 PH_3: PH domain; PDB: 94.1 0.23 5E-06 46.1 8.0 89 9-118 12-101 (104)
96 cd01222 PH_clg Clg (common-sit 93.5 0.64 1.4E-05 42.6 9.6 91 12-117 6-96 (97)
97 cd07823 SRPBCC_5 Ligand-bindin 93.3 1.9 4.1E-05 41.1 13.2 138 207-358 2-145 (146)
98 KOG3845 MLN, STAR and related 92.0 0.0092 2E-07 63.0 -5.2 151 176-333 27-184 (241)
99 KOG2059 Ras GTPase-activating 91.5 0.26 5.6E-06 58.4 5.4 97 12-117 567-665 (800)
100 KOG3751 Growth factor receptor 90.7 0.6 1.3E-05 53.8 7.1 105 6-116 313-424 (622)
101 cd01223 PH_Vav Vav pleckstrin 90.6 1.5 3.2E-05 41.6 8.6 89 29-118 20-113 (116)
102 KOG4424 Predicted Rho/Rac guan 89.3 0.92 2E-05 52.9 7.3 96 12-118 274-371 (623)
103 cd08865 SRPBCC_10 Ligand-bindi 87.9 21 0.00045 32.5 14.3 28 303-332 86-113 (140)
104 PF06240 COXG: Carbon monoxide 87.8 12 0.00026 35.8 12.9 124 209-347 2-128 (140)
105 PTZ00283 serine/threonine prot 87.7 1.2 2.5E-05 51.6 7.0 37 78-116 453-489 (496)
106 cd01232 PH_TRIO Trio pleckstri 87.4 4.9 0.00011 37.9 9.6 85 31-117 27-113 (114)
107 cd07812 SRPBCC START/RHO_alpha 86.8 16 0.00034 32.1 12.4 31 301-332 85-115 (141)
108 cd07818 SRPBCC_1 Ligand-bindin 85.8 20 0.00042 33.8 13.2 54 303-358 94-149 (150)
109 PF10604 Polyketide_cyc2: Poly 83.9 34 0.00073 31.2 18.9 99 206-327 4-108 (139)
110 KOG1117 Rho- and Arf-GTPase ac 83.3 4.8 0.0001 49.1 9.1 99 12-115 494-600 (1186)
111 cd07824 SRPBCC_6 Ligand-bindin 82.4 46 0.00099 31.6 14.4 25 304-330 90-114 (146)
112 cd01225 PH_Cool_Pix Cool (clon 78.9 7.1 0.00015 36.8 6.9 79 26-115 25-108 (111)
113 KOG0521 Putative GTPase activa 73.4 3.1 6.7E-05 51.1 3.8 95 12-118 276-370 (785)
114 COG3427 Carbon monoxide dehydr 68.2 91 0.002 30.9 11.9 118 206-347 3-132 (146)
115 KOG1117 Rho- and Arf-GTPase ac 67.5 8.4 0.00018 47.2 5.5 95 12-115 1032-1130(1186)
116 KOG1451 Oligophrenin-1 and rel 65.3 14 0.0003 43.6 6.5 101 7-115 262-366 (812)
117 KOG3549 Syntrophins (type gamm 63.8 12 0.00026 41.6 5.4 107 6-117 277-387 (505)
118 KOG3531 Rho guanine nucleotide 63.0 2 4.3E-05 52.1 -0.7 92 12-115 926-1018(1036)
119 cd01227 PH_Dbs Dbs (DBL's big 61.6 77 0.0017 30.9 10.0 86 31-119 32-118 (133)
120 cd07822 SRPBCC_4 Ligand-bindin 58.0 1.5E+02 0.0032 26.9 12.5 23 206-228 2-24 (141)
121 cd01240 PH_beta-ARK Beta adren 55.5 15 0.00033 34.6 3.9 98 9-117 2-99 (116)
122 KOG3723 PH domain protein Melt 52.7 5.8 0.00013 46.5 0.8 101 11-119 736-839 (851)
123 KOG1738 Membrane-associated gu 51.3 4.3 9.4E-05 48.0 -0.5 38 11-48 563-600 (638)
124 KOG0248 Cytoplasmic protein Ma 51.2 15 0.00032 44.1 3.7 92 12-117 251-342 (936)
125 KOG3543 Ca2+-dependent activat 49.4 7.9 0.00017 45.7 1.2 95 12-117 466-566 (1218)
126 cd01248 PH_PLC Phospholipase C 48.2 30 0.00065 32.1 4.7 36 79-114 78-114 (115)
127 cd01262 PH_PDK1 3-Phosphoinosi 48.1 45 0.00097 30.4 5.5 83 12-115 3-87 (89)
128 cd08862 SRPBCC_Smu440-like Lig 47.5 2.2E+02 0.0048 25.9 15.0 23 206-228 3-25 (138)
129 COG2867 Oligoketide cyclase/li 47.0 1.2E+02 0.0026 30.1 8.7 105 204-333 2-117 (146)
130 PF15405 PH_5: Pleckstrin homo 46.5 32 0.0007 33.3 4.8 39 77-115 96-134 (135)
131 KOG4047 Docking protein 1 (p62 44.3 20 0.00043 41.2 3.3 105 6-117 4-118 (429)
132 KOG1264 Phospholipase C [Lipid 44.1 27 0.00059 42.8 4.5 42 78-119 872-913 (1267)
133 cd01231 PH_Lnk LNK-family Plec 36.3 62 0.0013 30.3 4.6 50 54-114 54-106 (107)
134 cd01228 PH_BCR-related BCR (br 33.1 45 0.00098 30.8 3.2 81 11-115 4-93 (96)
135 cd01226 PH_exo84 Exocyst compl 32.8 2.2E+02 0.0048 26.5 7.7 93 11-116 3-98 (100)
136 PF15406 PH_6: Pleckstrin homo 31.6 1.2E+02 0.0025 28.9 5.6 53 48-113 57-110 (112)
137 KOG1739 Serine/threonine prote 30.4 97 0.0021 36.2 5.9 92 12-118 20-118 (611)
138 KOG0932 Guanine nucleotide exc 29.0 57 0.0012 38.7 3.8 105 12-124 508-627 (774)
139 cd07816 Bet_v1-like Ligand-bin 26.9 5.7E+02 0.012 24.5 13.9 112 206-330 3-122 (148)
140 KOG1737 Oxysterol-binding prot 26.7 36 0.00078 42.0 1.9 35 11-48 78-112 (799)
141 KOG0976 Rho/Rac1-interacting s 25.9 31 0.00067 42.2 1.1 105 10-117 812-920 (1265)
142 PHA02770 hypothetical protein; 24.3 1.9E+02 0.0042 24.9 5.2 46 33-98 25-70 (81)
143 PF14784 ECIST_Cterm: C-termin 23.3 1.6E+02 0.0035 28.5 5.2 18 97-114 94-111 (126)
144 cd07814 SRPBCC_CalC_Aha1-like 22.7 5.7E+02 0.012 23.0 14.3 51 303-358 88-138 (139)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=1.3e-178 Score=1504.10 Aligned_cols=671 Identities=34% Similarity=0.607 Sum_probs=597.7
Q ss_pred CCCcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEe
Q 004624 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (741)
Q Consensus 8 ~~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~ 87 (741)
+.+.||||||++|+||||++|||+|||||+||+|+|||++|.++ ++|||+++|||||||||+|||+|||+++|||+|||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 46779999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHHHHHhCCCCCCC----C--------------cccCCCC-----------CCCcc
Q 004624 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALKGGPHQGV----G--------------DHIGCPN-----------SPWES 138 (741)
Q Consensus 88 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~~~~~----~--------------~~~~~~~-----------~~~~~ 138 (741)
+++|+++++|||.|+|||++||+||++|++|+...+.. . ++.+++. .+.++
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 99999999999999999999999999999975322110 0 1112222 25577
Q ss_pred cccccCCCCCCCccccCCCcCCc--cccccccccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCH
Q 004624 139 FRLSGSSRASHTKSIDWTLCSGT--HMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTS 216 (741)
Q Consensus 139 ~r~~~~~~~~~~~~~~w~~~~~~--~n~~~~~~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdasp 216 (741)
+|..+||+|||.+.++||...+. +|+++.+|+++.++|++++|+||+|||++..+.+++++ +.+++||++|+|+++|
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~-~~~~~mKavGVV~asp 239 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR-SCSRAMKAVGVVEATC 239 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc-cCCceeEEEEEecCCH
Confidence 78789999999999999977664 38899999999999999999999999999999887766 4569999999999999
Q ss_pred HHHHHHHhcCCCCeeE-------EEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCC
Q 004624 217 EAIFQTLMSLGASRSV-------GCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKK 289 (741)
Q Consensus 217 e~Vf~~L~d~d~~r~e-------~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~ 289 (741)
++||++||+++..|++ +++||+||+||+|+|.++++.|+|+.++|||||++|||++++||+|+|+++||+||+
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 9999999987765554 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeEEEeceeEEEEecC---CCCeeEEEEEEeeecCCccccccccchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 004624 290 CPRQKGSVRACLKSGGYVITPMN---HGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRAKQGNYSS 366 (741)
Q Consensus 290 ~Pp~kG~VRaei~~sGyvI~Pl~---~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~~~~~~~~~ 366 (741)
|||++|||||++++|||+|.|++ +.++|+|+|++|+|||||+|+|.++|+++++++||++||+|||||+++++.+.
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999994 33699999999999999999999999999999999999999999999998777
Q ss_pred CccccccccccccccccCCCcccCCCcCCC--CCCCCcccccccccccccccCCCCccccccCCCCCCCCCCCCCCCCCC
Q 004624 367 PEFLSGELTRNMRMHQTDGNMVQMPTEDGN--SKKNTSEEVDQVSSEHASLVGLNDAADEFFDVPEPSDYDDSENGWTSD 444 (741)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~de~~d~~~~~~~~~~~~~~~~~ 444 (741)
.+|+++|.+++.+. .++++++ ++...+.+.....+.+++++++++++|||||+||++++....+
T Consensus 399 -------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~k----- 464 (719)
T PLN00188 399 -------PPRIPVMVNMASAS--VSSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTK----- 464 (719)
T ss_pred -------cccceeeccccccc--ccccccccccccccccccccccchhhhhhccccccchhccCCCccccccccc-----
Confidence 78889998887432 2222222 1122233333444556888999999999999999876311000
Q ss_pred CCCCCCCCCCCCccccccccchhhhhhHHHhhcCcccccCCccCCCCc-cccCcccccCCCCCCCCceecCCCCceEEcc
Q 004624 445 FGPEMNSQDTRHPKISTAAGFVRKLHDLAVQKRGYVDLQGTAKEDNFS-CCYGTTLQKDPTCTLPCSWTSTDPSTFLIRG 523 (741)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~Ws~~~~~~F~VRG 523 (741)
. + +..+. ..+.+++.|+ ++|+|+|++++.+++.+||++|++++|+|||
T Consensus 465 ----~---~--------~~~~~----------------~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG 513 (719)
T PLN00188 465 ----N---E--------TKDTA----------------MEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRS 513 (719)
T ss_pred ----c---c--------ccccc----------------cccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcC
Confidence 0 0 00000 2345677788 9999999999999999999999999999999
Q ss_pred ccccccCcccccCCCceeEEEEEeeecCCcccccCCCCCCchhhhhhhcCCceEEEEEEEecCCCceeEEEEEeecCCCC
Q 004624 524 KNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPGSTTYSLALYYMMTTPVK 603 (741)
Q Consensus 524 ~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~d~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~~p~~slV~Yf~~~~~~~ 603 (741)
+|||+||+|+||+++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++++ +.
T Consensus 514 ~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k--~~F~fiVNlQvPg~~~ys~V~Yf~~~~-l~ 590 (719)
T PLN00188 514 KNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK--GLFSFVVNLQVPGSTHYSMVFYFVTKE-LV 590 (719)
T ss_pred CCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc--CCcEEEEEEEccCCCceEEEEEEeccC-CC
Confidence 999999999999999999999999999999999999999999987665 489999999999999999999999865 77
Q ss_pred CchhHHHhhcCCchhhccceecccccccCceeEeeecCCccEEeeeeeEEEEEeCCCEEEEEEEeCChHHHHHHHHHhhc
Q 004624 604 DAPLLESFINGDDAYRNSRFKLIPYISEGSWIVKQSVGKKACLIGQALEINYFHGKNYLELGVDIGSSTVARGVVSLVLG 683 (741)
Q Consensus 604 ~~~Ll~rf~~gdd~fRn~RfKlIp~v~~gpwivk~avg~kp~L~gk~~~~~y~~g~~YlEiDvDi~sS~vAr~v~~l~~g 683 (741)
+++||+||++|||+|||+||||||+|++||||||++||+|||||||+++|+||+|+||||||||||||+||++|++||+|
T Consensus 591 ~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g 670 (719)
T PLN00188 591 PGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIG 670 (719)
T ss_pred CchHHHHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEEeecCCccccccceeceEeecccCcccccccCCCC
Q 004624 684 YLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLDAAKAVLLKPSS 729 (741)
Q Consensus 684 ~~~~lvvD~af~Ieg~~~eELPE~lLG~~Rl~~~d~~~a~~~~~~~ 729 (741)
|+++|||||||+|||+++|||||+|||||||++||+++|+.+++..
T Consensus 671 ~~~~lvvD~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~~~~ 716 (719)
T PLN00188 671 VITTLVVDMAFLVQANTYEELPERLIGAVRVSHVELSSAIVPKLDP 716 (719)
T ss_pred hhhheEEEEEEEEecCChhhCchhheeeEEecccchhhccccCCCC
Confidence 9999999999999999999999999999999999999999877654
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=1e-73 Score=586.64 Aligned_cols=207 Identities=54% Similarity=0.929 Sum_probs=201.9
Q ss_pred eecCCCCceEEccccccccCcccccCCCceeEEEEEeeecCCcccccCCCCCCchhhhhhhcCCceEEEEEEEecC----
Q 004624 511 WTSTDPSTFLIRGKNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPG---- 586 (741)
Q Consensus 511 Ws~~~~~~F~VRG~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~d~ia~~~~~~~~~~~~~~~~p~~~ivN~qvP~---- 586 (741)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|+.++++....+ +.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-GVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-CCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999887766 57999999999999
Q ss_pred ------CCceeEEEEEeecCCCCC------chhHHHhhcCC---chhhccceecccccccCceeEeeec-CCccEEeeee
Q 004624 587 ------STTYSLALYYMMTTPVKD------APLLESFINGD---DAYRNSRFKLIPYISEGSWIVKQSV-GKKACLIGQA 650 (741)
Q Consensus 587 ------~p~~slV~Yf~~~~~~~~------~~Ll~rf~~gd---d~fRn~RfKlIp~v~~gpwivk~av-g~kp~L~gk~ 650 (741)
+|+||+|+||++++++.+ .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~ 159 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKK 159 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCc
Confidence 899999999999998876 78999999999 9999999999999999999999999 9999999999
Q ss_pred eEEEEEeCCCEEEEEEEeCChHHHHHHHHHhhcccceEEEEEEEEeecCCccccccceeceEeecccC
Q 004624 651 LEINYFHGKNYLELGVDIGSSTVARGVVSLVLGYLNNLVIEMAFLIQANTEEELPEFLLGTCRLNHLD 718 (741)
Q Consensus 651 ~~~~y~~g~~YlEiDvDi~sS~vAr~v~~l~~g~~~~lvvD~af~Ieg~~~eELPE~lLG~~Rl~~~d 718 (741)
++|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 160 ~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 160 LQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred cceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.7e-33 Score=285.53 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=155.4
Q ss_pred cCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhc------CCCCeeEEEEEEeecCceEE
Q 004624 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS------LGASRSVGCVVEHLDGHTDI 245 (741)
Q Consensus 172 a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d------~d~~r~e~~VVE~ID~~tdI 245 (741)
..++|++.+..+|+.||++.... ..++++|++|+|+++|++||+++.+ ||....++++||+||+||+|
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~~------~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I 93 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSRK------YHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFI 93 (204)
T ss_pred cccCCeEEecCCceEEEEEEcCC------CCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEE
Confidence 45899999999999999986432 3469999999999999999999887 34556669999999999999
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecC-CCCeeEEEEEEe
Q 004624 246 IHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHMLA 324 (741)
Q Consensus 246 vY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~-~~~~~~VT~i~q 324 (741)
+|.++++.. .+.++|||||.+|+|++++++.|++++.||+||+|||++|||||+++++||+|+|++ ++++|++||++|
T Consensus 94 ~~~~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~ 172 (204)
T cd08904 94 CHTITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQ 172 (204)
T ss_pred EEEeccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEE
Confidence 999987632 244999999999999998788999999999999999999999999999999999995 456899999999
Q ss_pred eecCCccccccccchhhHHHHHHHHHHHHHHH
Q 004624 325 IDWKCWRSYLQPSSARSITIRMLGRVAALREL 356 (741)
Q Consensus 325 vD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~ 356 (741)
+|||||+|.++ .++.++..|++.+..|++-
T Consensus 173 ~DlkG~lP~~v--v~~~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 173 PELRGNLSRSV--IEKTMPTNLVNLILDAKDG 202 (204)
T ss_pred eCCCCCCCHHH--HHHHhHHHHHHHHHHHHHh
Confidence 99999999876 6788888899988888764
No 4
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.97 E-value=1.3e-30 Score=264.33 Aligned_cols=179 Identities=18% Similarity=0.269 Sum_probs=153.3
Q ss_pred cccCCCcEEEEeeC-CeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHh-cC------CCCeeEEEEEEeecC
Q 004624 170 VIAPSPWTIFGCQN-GLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLM-SL------GASRSVGCVVEHLDG 241 (741)
Q Consensus 170 ~~a~s~Wkl~~~~n-GVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~-d~------d~~r~e~~VVE~ID~ 241 (741)
+....+|++.+.++ ||+||++..++ .++++|++++|+++|++||+.|+ |. +....++++|+++|+
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~-------~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~ 92 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG-------VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDD 92 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC-------CceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecC
Confidence 34455999999997 99999998664 24899999999999999998665 53 334556999999999
Q ss_pred ceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCC-CCeeEEE
Q 004624 242 HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVK 320 (741)
Q Consensus 242 ~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~-~~~~~VT 320 (741)
+++|+|.++.+. +||++++||||++|+|++.+ +.|+|+.+|+.||++|+++|||||+...+||+|+|+++ +++|.||
T Consensus 93 ~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~ 170 (208)
T cd08868 93 NTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFT 170 (208)
T ss_pred CcEEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEE
Confidence 999999888765 46899999999999999865 67999999999999999999999999999999999953 4689999
Q ss_pred EEEeeecCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004624 321 HMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 359 (741)
Q Consensus 321 ~i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~~ 359 (741)
|++++|||||+|.|+ ....+...+++.+.+||+++..
T Consensus 171 ~~~~~Dp~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 171 WLLNTDLKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEECCCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 999999999999976 4455556677888899999864
No 5
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.97 E-value=1.1e-30 Score=269.31 Aligned_cols=174 Identities=18% Similarity=0.177 Sum_probs=154.4
Q ss_pred CCCCCCCccccCCCcCCcc----ccccccccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHH
Q 004624 144 SSRASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAI 219 (741)
Q Consensus 144 ~~~~~~~~~~~w~~~~~~~----n~~~~~~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~V 219 (741)
+.+.-.++|++|+++||+| |+.|++.+.+.++|++.+.++||+||++.. +..+.||+++++++++++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v 92 (235)
T cd08873 21 SLQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDA 92 (235)
T ss_pred ecCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC--------CCceEEEEEEEecCCHHHH
Confidence 4556678999999999987 899999999999999999999999999972 2357899999999999999
Q ss_pred HHHHhcCC------CCeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEc-CC-CeEEEEEEccCCCCCC
Q 004624 220 FQTLMSLG------ASRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DD-GTYVILYHSVFHKKCP 291 (741)
Q Consensus 220 f~~L~d~d------~~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~-~D-GsyVI~~~SV~Hp~~P 291 (741)
+++|.|.+ ....++++|+++|++..|+|.++. +||++++||||++++|++. ++ +.|+|..+||.|+.+|
T Consensus 93 ~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p---~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~P 169 (235)
T cd08873 93 FDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMP---SLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVP 169 (235)
T ss_pred HHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcC---CCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCC
Confidence 99999954 445669999999998888887754 3678999999999999984 33 4599999999999999
Q ss_pred CCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCC
Q 004624 292 RQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 329 (741)
Q Consensus 292 p~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kG 329 (741)
|++|||||....|||+|+|++++ +|+|||++|+||+=
T Consensus 170 p~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 170 QTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred CCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 99999999999999999999765 89999999999964
No 6
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=6.7e-31 Score=270.56 Aligned_cols=175 Identities=15% Similarity=0.237 Sum_probs=156.4
Q ss_pred CCCccccCCCcCCcc----ccccccccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHH
Q 004624 148 SHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTL 223 (741)
Q Consensus 148 ~~~~~~~w~~~~~~~----n~~~~~~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L 223 (741)
-.++|++|+++||+| |+.++...++.++|++...++||+||++. + +..+.||+++++++|++++|++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~-------s~~l~fk~e~~vdvs~~~l~~LL 97 (236)
T cd08914 26 EVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E-------HDVLSVWVEKHVKRPAHLAYRLL 97 (236)
T ss_pred cCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C-------CCcEEEEEEEEEcCCHHHHHHHH
Confidence 567999999999987 89999999999999999999999999995 3 34689999999999999999999
Q ss_pred hcCC------CCeeEEEEEEeecCceEEEEEEeecCCCCC-CCCCCeEEEEEEEEEcC-CCe-EEEEEEccCCCCCCCCC
Q 004624 224 MSLG------ASRSVGCVVEHLDGHTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRRED-DGT-YVILYHSVFHKKCPRQK 294 (741)
Q Consensus 224 ~d~d------~~r~e~~VVE~ID~~tdIvY~~~~~~~~P~-~vspRDFV~lR~wrr~~-DGs-yVI~~~SV~Hp~~Pp~k 294 (741)
.|++ ....++++|+++|++++ +|+...+ || |+++||||++++|++.. +|. |+|..+||.||.+||.+
T Consensus 98 ~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~p---Pw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~k 173 (236)
T cd08914 98 SDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHITCP---IVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSP 173 (236)
T ss_pred hChhhhchhHHhhceEEEEEEeCCCcC-EEEEecC---CCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCC
Confidence 9965 34566999999999998 5666554 56 79999999999988775 775 99999999999999999
Q ss_pred CeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccccc
Q 004624 295 GSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQP 336 (741)
Q Consensus 295 G~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~ 336 (741)
||||+..+++||+|+|++++ +|+|||++|+|| ||+|.+..
T Consensus 174 g~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~~~ 213 (236)
T cd08914 174 QYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYFAG 213 (236)
T ss_pred CcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchheEE
Confidence 99999999999999999764 899999999999 99998643
No 7
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.97 E-value=2.5e-30 Score=263.51 Aligned_cols=183 Identities=17% Similarity=0.182 Sum_probs=153.7
Q ss_pred cccccccCCCcEEEEee-CCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHH-HHHhcC------CCCeeEEEEEE
Q 004624 166 VTADVIAPSPWTIFGCQ-NGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSL------GASRSVGCVVE 237 (741)
Q Consensus 166 ~~~~~~a~s~Wkl~~~~-nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf-~~L~d~------d~~r~e~~VVE 237 (741)
+...+.+.++|++.+.. +||+||++..++ .+++||++++|++|+++|| ++|.|. +.+..++++|+
T Consensus 17 ~~~~l~~~~~W~l~~~~~~gi~V~s~~~~~-------~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~ 89 (209)
T cd08906 17 VEQILAQEENWKFEKNNDNGDTVYTLEVPF-------HGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQ 89 (209)
T ss_pred HHHHhhcccCCEEEEecCCCCEEEEeccCC-------CCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhhee
Confidence 33456677899998865 999999987663 2489999999999999998 577774 45567799999
Q ss_pred eecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEec-CCCCe
Q 004624 238 HLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM-NHGKK 316 (741)
Q Consensus 238 ~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl-~~~~~ 316 (741)
++|++++|+| ...+.|.++++++||||++|+|++.+|+ |+++..|+.|+.+||++|||||+++++||.|.|. +++++
T Consensus 90 ~~~~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~ 167 (209)
T cd08906 90 RVDDNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSV 167 (209)
T ss_pred eccCCcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCc
Confidence 9999999999 4454456679999999999999987665 8999999999999999999999999999999997 45568
Q ss_pred eEEEEEEeeecCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004624 317 SVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 359 (741)
Q Consensus 317 ~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~~ 359 (741)
|+|||++|+|||||+|.++ .+..++-.++..+.+||+.++.
T Consensus 168 t~vt~~~~~Dp~G~lP~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRLPRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999965 4445555567778899998863
No 8
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=6.3e-30 Score=258.12 Aligned_cols=173 Identities=25% Similarity=0.346 Sum_probs=147.7
Q ss_pred cCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhc----CCCCeeEEEEEEeecCceEEEE
Q 004624 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS----LGASRSVGCVVEHLDGHTDIIH 247 (741)
Q Consensus 172 a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d----~d~~r~e~~VVE~ID~~tdIvY 247 (741)
...+|++...++||+||.+..+.. +.+++||++++|+++|++|++.|++ |+....++++|+++|++++|+|
T Consensus 17 ~~~~W~~~~~~~gi~I~~k~~~~~-----~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~vie~id~~~~i~y 91 (197)
T cd08869 17 KSKGWVSVSSSDHVELAFKKVDDG-----HPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKVVETLDEDTEVYQ 91 (197)
T ss_pred ccCCceEEecCCcEEEEEEeCCCC-----CcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEEEEEecCCcEEEE
Confidence 367999999999999999987542 3578999999999999999999987 4556777999999999999999
Q ss_pred EEeecCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEEccCCC-CCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEee
Q 004624 248 KQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 325 (741)
Q Consensus 248 ~~~~~~~~P~~vspRDFV~lR~wrr~-~DGsyVI~~~SV~Hp-~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qv 325 (741)
+++.+ |||+++||||++|+|+.. ++|.|+|+.+||.|| .+|+ |||||....+||+|+|++++ +|+|||++|+
T Consensus 92 ~~~~~---p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~~~~ 165 (197)
T cd08869 92 YVTNS---MAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHICRV 165 (197)
T ss_pred EEeeC---CCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEEEEE
Confidence 88775 568999999999999875 678999999999995 6666 99999999999999999754 8999999999
Q ss_pred ecCCcccccc-ccchhhHHHHHHHHHHHHHHHHHh
Q 004624 326 DWKCWRSYLQ-PSSARSITIRMLGRVAALRELFRA 359 (741)
Q Consensus 326 D~kGwip~~~-~~~~~~~~~~mL~~Va~LRe~~~~ 359 (741)
|||||+|.|+ +.+. ++..+ .|..||+.|.+
T Consensus 166 Dp~G~iP~wl~N~~~-~~~~~---~~~~l~~~~~~ 196 (197)
T cd08869 166 DLRGRSPEWYNKVYG-HLCAR---ELLRIRDSFRQ 196 (197)
T ss_pred CCCCCCCceeecchH-hHHHH---HHHHHHhhccC
Confidence 9999999964 4455 33333 45589998864
No 9
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.97 E-value=4.3e-30 Score=266.38 Aligned_cols=186 Identities=18% Similarity=0.173 Sum_probs=159.5
Q ss_pred CCCCCCccccCCCcCCcc----ccccccccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHH
Q 004624 145 SRASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF 220 (741)
Q Consensus 145 ~~~~~~~~~~w~~~~~~~----n~~~~~~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf 220 (741)
.+.-.++|++|+++||+| |+.|++.+.+.++|++.+.++||+||++.. +..+.||++++|++++++|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~--------s~~~~fK~e~~vd~s~e~v~ 97 (240)
T cd08913 26 KQTEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE--------DKFLSFKVEMVVHVDAAQAF 97 (240)
T ss_pred ccccCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC--------CCccEEEEEEEEcCCHHHHH
Confidence 344678999999999987 899999999999999999999999999652 24589999999999999999
Q ss_pred HHHhcCC------CCeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEc-CCC-eEEEEEEccCCCCCCC
Q 004624 221 QTLMSLG------ASRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG-TYVILYHSVFHKKCPR 292 (741)
Q Consensus 221 ~~L~d~d------~~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~-~DG-syVI~~~SV~Hp~~Pp 292 (741)
++|.|.+ ....++++|+++|++.. +|++..+.| +|++++||||++++|++. ++| .|+|+.+|+.||++||
T Consensus 98 ~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp 175 (240)
T cd08913 98 LLLSDLRRRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPP 175 (240)
T ss_pred HHHhChhhhhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCC
Confidence 9999954 45677999999999865 687776655 479999999999999775 343 7999999999999999
Q ss_pred CCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccc-cccchhhH
Q 004624 293 QKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSI 342 (741)
Q Consensus 293 ~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~-~~~~~~~~ 342 (741)
++|||||+..+|||+|.|++++ +|+|||++|+||+ ++|.+ .+.+....
T Consensus 176 ~kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dPG-~LP~~~~N~~~~~~ 224 (240)
T cd08913 176 TPEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATPG-VLPYISTDIAGLSS 224 (240)
T ss_pred CCCcEEeeecccEEEEEECCCC-cEEEEEEEEeCCc-cccHHHhhhhhhcc
Confidence 9999999999999999999765 8999999999995 99985 43433333
No 10
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=6.5e-30 Score=256.18 Aligned_cols=174 Identities=11% Similarity=0.158 Sum_probs=153.8
Q ss_pred cCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhc------CCCCeeEEEEEEeecCceEE
Q 004624 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS------LGASRSVGCVVEHLDGHTDI 245 (741)
Q Consensus 172 a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d------~d~~r~e~~VVE~ID~~tdI 245 (741)
..++|++.+.++|+.||++..+. +.+++||++|+|+..+++|++.|.+ ||++..++++||+||++|.|
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~e------f~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I 94 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSEE------FGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCV 94 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCCc------CCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEE
Confidence 56799999999999999997654 4689999999999999999999987 45666779999999999999
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecC-CCCeeEEEEEEe
Q 004624 246 IHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHMLA 324 (741)
Q Consensus 246 vY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~-~~~~~~VT~i~q 324 (741)
+|++.... +.+.++|||||.+|++.+.+||. +++..|++|+..|| |||||+++++||++.|+. ++++|.+||++|
T Consensus 95 ~~yvt~~~-~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq 170 (202)
T cd08902 95 MRYTTAGQ-LLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQ 170 (202)
T ss_pred EEEEcccC-CcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEEEE
Confidence 86554432 45789999999999999988875 78899999999888 999999999999999994 667999999999
Q ss_pred eecCCccccccccchhhHHHHHHHHHHHHHHHH
Q 004624 325 IDWKCWRSYLQPSSARSITIRMLGRVAALRELF 357 (741)
Q Consensus 325 vD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~ 357 (741)
+|+|||+|+.+ .++.++..|+++...||+.+
T Consensus 171 ~DLkG~LPqsi--Idq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 171 TDLRGMLPQSA--VDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred ecCCCCccHHH--HHHHhhHHHHHHHHHHHHhc
Confidence 99999999865 78899999999999999875
No 11
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.97 E-value=2.2e-29 Score=256.18 Aligned_cols=178 Identities=17% Similarity=0.141 Sum_probs=148.7
Q ss_pred cCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhcCC--------CCeeEEEEEEeecCce
Q 004624 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLG--------ASRSVGCVVEHLDGHT 243 (741)
Q Consensus 172 a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d~d--------~~r~e~~VVE~ID~~t 243 (741)
..++|++.+.+||++||++.... ..++.||++++|++++++||++|+|.. ....++++||+||+++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~ 93 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE------FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDV 93 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC------CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCE
Confidence 46899999999999999985422 234679999999999999999998642 2345699999999999
Q ss_pred EEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecC-CCCeeEEEEE
Q 004624 244 DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHM 322 (741)
Q Consensus 244 dIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~-~~~~~~VT~i 322 (741)
.|+|..+ |..+.+.+++||||++|+|++.+||.|++...|+.||.|||++|||||+..++||++.|+. ++++|+|||+
T Consensus 94 ~i~~~~~-p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~ 172 (208)
T cd08903 94 SVCRTVT-PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSF 172 (208)
T ss_pred EEEEEec-chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE
Confidence 9988732 2111234999999999999999999999999999999999999999999999999999994 3468999999
Q ss_pred EeeecCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 004624 323 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 323 ~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
+++|||||+|.++ ....++-.+...+.+||+.+.
T Consensus 173 ~~~DpkG~iP~~l--vn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 173 FQTDLSGYLPQTV--VDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EEeccCCCcCHHH--HHHHhhHHHHHHHHHHHHHHh
Confidence 9999999999865 344555566778889999875
No 12
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=2.9e-29 Score=254.18 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=148.5
Q ss_pred cCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhc--C------CCCeeEEEEEEeecCce
Q 004624 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS--L------GASRSVGCVVEHLDGHT 243 (741)
Q Consensus 172 a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d--~------d~~r~e~~VVE~ID~~t 243 (741)
...+|++.+.++|++||++.... ..++++|+++.|++++++|+++|++ . +....++++|+++|+++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~ 93 (206)
T cd08867 20 DTDGWKVLKTVKNITVSWKPSTE------FTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDL 93 (206)
T ss_pred CcCCcEEEEcCCCcEEEEecCCC------CCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCe
Confidence 34799999999999999985332 2347899999999999999999998 2 22345599999999999
Q ss_pred EEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecC-CCCeeEEEEE
Q 004624 244 DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHM 322 (741)
Q Consensus 244 dIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~-~~~~~~VT~i 322 (741)
+|+|+... ....+++++||||++++|++.++|.|+++.+||+||.+||.+|||||++..+||+|+|+. ++++|.+||+
T Consensus 94 ~i~~~~~p-~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~ 172 (206)
T cd08867 94 CVGRTITP-SAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLY 172 (206)
T ss_pred EEEEEEcc-ccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEE
Confidence 99998532 212345999999999999999888999999999999999999999999999999999984 4458999999
Q ss_pred EeeecCCccccccccchhhHHHHHHHHHHHHHHHH
Q 004624 323 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 357 (741)
Q Consensus 323 ~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~ 357 (741)
+|+|||||+|.++ ....++..++..+..||+++
T Consensus 173 ~~~DpkG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 173 VQTDLRGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEeccCCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 9999999999865 44455556777778899875
No 13
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=2.1e-29 Score=255.99 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=155.8
Q ss_pred ccccccccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhcCCC------CeeEEEEE
Q 004624 163 MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA------SRSVGCVV 236 (741)
Q Consensus 163 n~~~~~~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d~d~------~r~e~~VV 236 (741)
|+.++..+.+.++|++.+.++||+||++..++ ..+.||++++|++++++|+++|.|... ...++++|
T Consensus 11 n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~-------~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl 83 (205)
T cd08874 11 NLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG-------TYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIH 83 (205)
T ss_pred hHHHHHhhhccCCcEEEecCCCEEEEEecCCC-------CcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeee
Confidence 88999999999999999999999999997553 357899999999999999999998653 33449999
Q ss_pred EeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCC-CeEeEEEeceeEEEEec---C
Q 004624 237 EHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQK-GSVRACLKSGGYVITPM---N 312 (741)
Q Consensus 237 E~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~k-G~VRaei~~sGyvI~Pl---~ 312 (741)
+++|+++.|+|+++.+.| |.++++||||+++.|+..+ +.|+|..+||.||.+|+.+ |||||.+++|||+|+|+ +
T Consensus 84 ~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~-~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g 161 (205)
T cd08874 84 KTFTEDICLVYLVHETPL-CLLKQPRDFCCLQVEAKEG-ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEG 161 (205)
T ss_pred eecCCCeEEEEEEecCCC-CCCCCCCeEEEEEEEEECC-CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCC
Confidence 999999999999877543 4455999999999998765 4566999999999999996 99999999999999999 4
Q ss_pred CCCeeEEEEEEeeecC-CccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004624 313 HGKKSVVKHMLAIDWK-CWRSYLQPSSARSITIRMLGRVAALRELFRA 359 (741)
Q Consensus 313 ~~~~~~VT~i~qvD~k-Gwip~~~~~~~~~~~~~mL~~Va~LRe~~~~ 359 (741)
++ +|+|||++|+||+ |-+|.++ ....+.+....||.||.|+++
T Consensus 162 ~~-~t~vty~~q~DPggg~iP~~l---~N~~~~~~p~~~~~~~~~~~~ 205 (205)
T cd08874 162 NQ-YTRVIYIAQVALCGPDVPAQL---LSSLSKRQPLVIARLALFLEA 205 (205)
T ss_pred CC-cEEEEEEEEECCCCCCCCHHH---HhHHHHhccHHHHHHHHHhhC
Confidence 43 8999999999999 7999753 223334455678999998863
No 14
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=1.6e-29 Score=256.21 Aligned_cols=171 Identities=22% Similarity=0.305 Sum_probs=144.3
Q ss_pred CCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhc----CCCCeeEEEEEEeecCceEEEEEE
Q 004624 174 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS----LGASRSVGCVVEHLDGHTDIIHKQ 249 (741)
Q Consensus 174 s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d----~d~~r~e~~VVE~ID~~tdIvY~~ 249 (741)
.+|..+...+++.++.+....+ ...+++|+++.|+++|++|+..|++ |+....++++||++|+|++|+|+.
T Consensus 27 k~w~~~~~~~~~e~~ykK~~d~-----~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~tdi~~y~ 101 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVGDG-----NPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQTEVYQYV 101 (205)
T ss_pred cCCcccCCcCCeEEEEecCCCC-----CceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCCcEEEEEE
Confidence 4677777777777755543321 3568999999999999999888776 445567799999999999999999
Q ss_pred eecCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecC
Q 004624 250 LYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 328 (741)
Q Consensus 250 ~~~~~~P~~vspRDFV~lR~wrr~-~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~k 328 (741)
+++ |+|+++||||++|+|++. ++|+|+|+++||+|++|||. |||||..+.+||+|+|++++ +|+|||++++|||
T Consensus 102 ~~~---~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~~vDpk 176 (205)
T cd08909 102 LNC---MAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHICRVDLK 176 (205)
T ss_pred eec---CCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEEEecCC
Confidence 885 357999999999999987 68999999999999999995 99999999999999999876 8999999999999
Q ss_pred Cccccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004624 329 CWRSYL-QPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 329 Gwip~~-~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
||+|.| .+.+++.|+. .+++||+.|.
T Consensus 177 G~~P~W~~n~~g~~~~~----~~~~~r~sf~ 203 (205)
T cd08909 177 GHSPEWYNKGFGHLCAA----EAARIRNSFQ 203 (205)
T ss_pred CCChHHHHHhHHHHHHH----HHHHHHhhcc
Confidence 999995 5567776665 4668999885
No 15
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=1.2e-28 Score=247.64 Aligned_cols=174 Identities=21% Similarity=0.257 Sum_probs=146.9
Q ss_pred ccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCH-HHHHHHHhc---CCCCeeEEEEEEeecCceEEE
Q 004624 171 IAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTS-EAIFQTLMS---LGASRSVGCVVEHLDGHTDII 246 (741)
Q Consensus 171 ~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdasp-e~Vf~~L~d---~d~~r~e~~VVE~ID~~tdIv 246 (741)
....||......+|+.|+.+..+.+ ...+++|+.+.|+++| +.++++|++ ||....+.++||+||+++||+
T Consensus 24 ek~kgW~~~~~~~~vev~~kk~~d~-----~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~~~Ie~Ld~n~dI~ 98 (205)
T cd08907 24 ERFKGWHSAPGPDNTELACKKVGDG-----HPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHSQVIEALENNTEVY 98 (205)
T ss_pred hccCCceeecCCCCcEEEEEeCCCC-----CceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhhhhheeecCCCEEE
Confidence 3456999999999999999865432 3568999999999854 556666766 566778899999999999999
Q ss_pred EEEeecCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEee
Q 004624 247 HKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 325 (741)
Q Consensus 247 Y~~~~~~~~P~~vspRDFV~lR~wrr~-~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qv 325 (741)
|+.+. +|.|+++||||++|+|+.. ..|.|+|+++||.|++.||.+| |||..+.+||+|+|++.+ +|+||||+++
T Consensus 99 yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi~rv 173 (205)
T cd08907 99 HYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHICRA 173 (205)
T ss_pred EEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEEEEe
Confidence 98876 4578999999999999865 5678999999999999999999 999999999999999865 8999999999
Q ss_pred ecCCcccccccc-chhhHHHHHHHHHHHHHHHHH
Q 004624 326 DWKCWRSYLQPS-SARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 326 D~kGwip~~~~~-~~~~~~~~mL~~Va~LRe~~~ 358 (741)
|++||+|.|+++ +++.|+. .+.+||+.|.
T Consensus 174 D~rG~~P~Wynk~~g~~~a~----~l~~ir~sF~ 203 (205)
T cd08907 174 DLRGRSPDWYNKVFGHLCAM----EVARIRDSFP 203 (205)
T ss_pred CCCCCCcHHHHHhHHHHHHH----HHHHHHhhcc
Confidence 999999997654 5555544 4668999885
No 16
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.96 E-value=6e-28 Score=245.91 Aligned_cols=178 Identities=18% Similarity=0.199 Sum_probs=146.2
Q ss_pred ccCCCcEEEE-eeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHh-cC------CCCeeEEEEEEeecCc
Q 004624 171 IAPSPWTIFG-CQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLM-SL------GASRSVGCVVEHLDGH 242 (741)
Q Consensus 171 ~a~s~Wkl~~-~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~-d~------d~~r~e~~VVE~ID~~ 242 (741)
...++|++.+ .++|++||++..++ + +++||++++|++++++|++.|+ |. +....++++|+++|++
T Consensus 22 ~~~~~W~~~~~~~~gi~v~s~~~~~------~-~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~ 94 (209)
T cd08905 22 QDQEGWKTEIVAENGDKVLSKVVPD------I-GKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKD 94 (209)
T ss_pred ccccCCEEEEecCCCCEEEEEEcCC------C-CcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCC
Confidence 4557999995 58999999987764 2 3999999999999999995555 53 3345568999999999
Q ss_pred eEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCC-CCeeEEEE
Q 004624 243 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKH 321 (741)
Q Consensus 243 tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~-~~~~~VT~ 321 (741)
++|+|.. ...|..+++++||||++|+|++.+ +.++++..|+.|+.+||.+|||||+...+||+|+|+++ +++|+|||
T Consensus 95 ~~i~y~~-~~p~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~ 172 (209)
T cd08905 95 TLITHEV-AAETAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTW 172 (209)
T ss_pred ceEEEEE-eccCCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEE
Confidence 9999974 333322459999999999999874 56788889999999999999999999999999999964 45899999
Q ss_pred EEeeecCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 004624 322 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 359 (741)
Q Consensus 322 i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~~ 359 (741)
++++|||||+|.++ ....++-.++..+.+||+.+++
T Consensus 173 ~~~~DpkG~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 173 LLSIDLKGWLPKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEeecCCCCCCHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999865 3444455566777799998863
No 17
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.96 E-value=1.6e-27 Score=244.19 Aligned_cols=168 Identities=22% Similarity=0.299 Sum_probs=143.9
Q ss_pred ccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEe-cCCHHHHHHHHhcCC------CCeeEEEEEEeecC
Q 004624 169 DVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLG------ASRSVGCVVEHLDG 241 (741)
Q Consensus 169 ~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvV-daspe~Vf~~L~d~d------~~r~e~~VVE~ID~ 241 (741)
.+....+|++...++||+||++..++ +..+++|+++++ +++++.+|++|+|.+ ....++++|+++|+
T Consensus 18 ~~~~~~~W~~~~~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~ 91 (222)
T cd08871 18 LCDSTDGWKLKYNKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNP 91 (222)
T ss_pred HhcCCCCcEEEEcCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCC
Confidence 44456799999999999999998764 356899999986 799999999999853 34567999999999
Q ss_pred ceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEE
Q 004624 242 HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKH 321 (741)
Q Consensus 242 ~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~ 321 (741)
+++|+|..++. |+++++||||++|+|+..+ |.|+|+.+|+.|+.+|+.+|||||.+..+||+|+|+++ ++|.|||
T Consensus 92 ~~~i~y~~~~~---P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~-~~t~vt~ 166 (222)
T cd08871 92 NNDIGYYSAKC---PKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP-KGCTLTY 166 (222)
T ss_pred CCEEEEEEeEC---CCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC-CCEEEEE
Confidence 99999998764 6789999999999998865 88999999999999999999999999999999999975 4799999
Q ss_pred EEeeecCCccccc-cccchhhHHHHHH
Q 004624 322 MLAIDWKCWRSYL-QPSSARSITIRML 347 (741)
Q Consensus 322 i~qvD~kGwip~~-~~~~~~~~~~~mL 347 (741)
++|+||+||+|.+ ++.+....+..+|
T Consensus 167 ~~~~Dp~G~IP~~lvN~~~~~~~~~~l 193 (222)
T cd08871 167 VTQNDPKGSLPKWVVNKATTKLAPKVM 193 (222)
T ss_pred EEecCCCCCcCHHHHHHHHHHHhHHHH
Confidence 9999999999985 4555545444443
No 18
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.95 E-value=2.5e-26 Score=230.76 Aligned_cols=171 Identities=25% Similarity=0.292 Sum_probs=143.5
Q ss_pred ccccCCCcEEEEe-eCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHH-HHHhcC------CCCeeEEEEEEeec
Q 004624 169 DVIAPSPWTIFGC-QNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSL------GASRSVGCVVEHLD 240 (741)
Q Consensus 169 ~~~a~s~Wkl~~~-~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf-~~L~d~------d~~r~e~~VVE~ID 240 (741)
...+..+|++... ++|+.+|++..++. +.+..+|++++|++++++++ +++.|. +....++++||+++
T Consensus 14 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~ 88 (206)
T smart00234 14 AAASEPGWVLSSENENGDEVRSILSPGR-----SPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVID 88 (206)
T ss_pred hhCCCCccEEccccCCcceEEEEccCCC-----CceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEEC
Confidence 3445678999997 89999999876531 24789999999999999744 566664 33455599999999
Q ss_pred CceEEEEEEeecCCCCC-CCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEE
Q 004624 241 GHTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVV 319 (741)
Q Consensus 241 ~~tdIvY~~~~~~~~P~-~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~V 319 (741)
++++|+|..+.. |+ ++++||||++|+|+..++|.|+|+.+|+.|+.+|+.+|+|||++..+||+|+|++++ .|+|
T Consensus 89 ~~~~i~~~~~~~---~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~v 164 (206)
T smart00234 89 NGTVIYHYVSKF---VAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSKV 164 (206)
T ss_pred CCCeEEEEEEec---ccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeEE
Confidence 999999988764 45 899999999999999888899999999999999999999999999999999999876 6999
Q ss_pred EEEEeeecCCccccc-cccchhhHHHHHHH
Q 004624 320 KHMLAIDWKCWRSYL-QPSSARSITIRMLG 348 (741)
Q Consensus 320 T~i~qvD~kGwip~~-~~~~~~~~~~~mL~ 348 (741)
||+.|+||+||+|.+ ++.+.+..+..++.
T Consensus 165 t~~~~~D~~G~iP~~lvn~~~~~~~~~~~~ 194 (206)
T smart00234 165 TWVSHADLKGWLPHWLVRSLIKSGLAEFAK 194 (206)
T ss_pred EEEEEEecCCCccceeehhhhhhhHHHHHH
Confidence 999999999999984 55666666665544
No 19
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.94 E-value=1.1e-25 Score=225.52 Aligned_cols=184 Identities=26% Similarity=0.420 Sum_probs=148.3
Q ss_pred cccCCCcEEEEeeCCeEEEEecc-CCCCCCCCCCccEEEEEEEecCCHHHHHHHHhc----CCCCeeEEEEEEeecCceE
Q 004624 170 VIAPSPWTIFGCQNGLRLFKEGK-DRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS----LGASRSVGCVVEHLDGHTD 244 (741)
Q Consensus 170 ~~a~s~Wkl~~~~nGVrVy~~~~-~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d----~d~~r~e~~VVE~ID~~td 244 (741)
.....+|++...+++..++.... +.+. ..+..+|+.++|+++++++|..|++ |+....++++||+++++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~~le~~~~~~~ 90 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDS----CPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAEVLEQIDEDTD 90 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSS----TSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEEEEEEEETTEE
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCcccc----ccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhheeeeecCCCCe
Confidence 44678999999665555544433 2211 2578999999999999988888886 5566677999999999999
Q ss_pred EEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCC-CCCeEeEEEeceeEEEEecCCCCeeEEEEEE
Q 004624 245 IIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPR-QKGSVRACLKSGGYVITPMNHGKKSVVKHML 323 (741)
Q Consensus 245 IvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp-~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~ 323 (741)
|+|..+.+.| |+++++||||++|+|+...+|.|+|+.+|++||.+|+ .+|+|||.+..+||+|+|++++ .|+|||+.
T Consensus 91 i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt~~~ 168 (206)
T PF01852_consen 91 IVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVTYVS 168 (206)
T ss_dssp EEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEEEEE
T ss_pred EEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEEEEE
Confidence 9999988653 5589999999999999988999999999999999999 9999999999999999999876 69999999
Q ss_pred eeecCCccccccccchhhHHHHHHHHHHHHHHHHHhcc
Q 004624 324 AIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRAKQ 361 (741)
Q Consensus 324 qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~~~~ 361 (741)
|+||+||+|.++ ....+...+...+..||+.++...
T Consensus 169 ~~D~~G~iP~~~--~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 169 QVDPKGWIPSWL--VNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEESSSSSHHHH--HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EECCCCCChHHH--HHHHHHHhHHHHHHHHHHHHHHhc
Confidence 999999999754 222223334556668888887653
No 20
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.94 E-value=9.5e-26 Score=233.76 Aligned_cols=177 Identities=17% Similarity=0.231 Sum_probs=139.1
Q ss_pred CCCcEEEEeeCCeEEEEeccCCCCCCCCCCcc--EEEEEEEec-CCHHHHHHHHhcCC------CCeeEEEEEEeecCce
Q 004624 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHP--AIMAVGVVD-GTSEAIFQTLMSLG------ASRSVGCVVEHLDGHT 243 (741)
Q Consensus 173 ~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~--~~Ka~gvVd-aspe~Vf~~L~d~d------~~r~e~~VVE~ID~~t 243 (741)
..+|+++.+++||+||++..+++ ... .+||+++|+ +++++++++|+|.+ ....++++||++++++
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~s------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~ 98 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEED------GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDT 98 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCCC------CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCC
Confidence 44899999999999999987753 223 699999999 89999999999954 3455699999999999
Q ss_pred EEEEEEeecCCCCCCCCCCeEEEEEEEEEcCC-------CeEEEEEEccCCCCCCCCCCeEeEEEe---c-eeEEEEec-
Q 004624 244 DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD-------GTYVILYHSVFHKKCPRQKGSVRACLK---S-GGYVITPM- 311 (741)
Q Consensus 244 dIvY~~~~~~~~P~~vspRDFV~lR~wrr~~D-------GsyVI~~~SV~Hp~~Pp~kG~VRaei~---~-sGyvI~Pl- 311 (741)
+|+|..++ +|||+++||||++++|++.++ +.|++++.|+.||.+|+++||||+... . ++|++.|.
T Consensus 99 ~I~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g 175 (235)
T cd08872 99 LIFHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDG 175 (235)
T ss_pred EEEEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCC
Confidence 99997765 578999999999999998754 679999999999999999999999963 2 33333331
Q ss_pred ------CCCCeeEEEEEEeeecCCcccccc-ccchhhHHHHHHHHHHHHHHHHHhccC
Q 004624 312 ------NHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELFRAKQG 362 (741)
Q Consensus 312 ------~~~~~~~VT~i~qvD~kGwip~~~-~~~~~~~~~~mL~~Va~LRe~~~~~~~ 362 (741)
++ .+|+|||++++|||||+|.++ +...+.. ....+..|-.|+..+-.
T Consensus 176 ~~~~t~~~-~~~~ity~~~~dPgG~iP~wvvn~~~k~~---~P~~l~~~~~~~~~~~~ 229 (235)
T cd08872 176 NQEITRDN-ILCKITYVANVNPGGWAPASVLRAVYKRE---YPKFLKRFTSYVQEKTK 229 (235)
T ss_pred cccccCCC-CeEEEEEEEEeCCCCCccHHHHHHHHHhh---chHHHHHHHHHHHHhcC
Confidence 33 389999999999999999853 3222222 23445567777765543
No 21
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.94 E-value=1.4e-25 Score=228.21 Aligned_cols=173 Identities=18% Similarity=0.131 Sum_probs=144.6
Q ss_pred cCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEe-cCCHHHHHHHHhcC------CCCeeEEEEEEeecC-ce
Q 004624 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSL------GASRSVGCVVEHLDG-HT 243 (741)
Q Consensus 172 a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvV-daspe~Vf~~L~d~------d~~r~e~~VVE~ID~-~t 243 (741)
+.++|+++..++||+||++..++ +..+.||+++++ ++|+++++++|+|. +....+.++|++.++ ++
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~ 92 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG------TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGS 92 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCC
Confidence 55679999999999999998775 346799999876 89999999999994 445677999999755 89
Q ss_pred EEEEEEeecCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecC--CCCeeEEE
Q 004624 244 DIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN--HGKKSVVK 320 (741)
Q Consensus 244 dIvY~~~~~~~~P~~vspRDFV~lR~wrr~-~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~--~~~~~~VT 320 (741)
+|+|+.++ +|||+++||||+.|.|... ++|.|+|+++|+.||.+|+++||||+....|||+|+|++ +.++|.++
T Consensus 93 ~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~ 169 (207)
T cd08911 93 EIIYWEMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFV 169 (207)
T ss_pred EEEEEEEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEE
Confidence 99999876 5789999999999988776 557889999999999999999999999999999999994 33479999
Q ss_pred EEEeeecCCccccc-cccchhhHHHHHHHHHHHHHHH
Q 004624 321 HMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALREL 356 (741)
Q Consensus 321 ~i~qvD~kGwip~~-~~~~~~~~~~~mL~~Va~LRe~ 356 (741)
|+.+.|||||+|.+ ++.+....+..+|+ .|++-
T Consensus 170 ~~~~~dPgG~IP~~lvN~~~~~~~~~~l~---~l~~a 203 (207)
T cd08911 170 LTYFDNPGVNIPSYITSWVAMSGMPDFLE---RLRNA 203 (207)
T ss_pred EEEEeCCCCccCHHHHHHHHHhhccHHHH---HHHHH
Confidence 99999999999985 44444555544443 55543
No 22
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=6.2e-26 Score=230.21 Aligned_cols=170 Identities=24% Similarity=0.285 Sum_probs=143.9
Q ss_pred CCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhcC----CCCeeEEEEEEeecCceEEEEEE
Q 004624 174 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSL----GASRSVGCVVEHLDGHTDIIHKQ 249 (741)
Q Consensus 174 s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d~----d~~r~e~~VVE~ID~~tdIvY~~ 249 (741)
.+|..+...|++.++.+....+ +..+.||+++.|+++|++|+.+|++. +....++++||++|++++|+|++
T Consensus 27 k~w~~~~~~~~~el~~~k~~~g-----s~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~~vIe~ld~~~~I~Yy~ 101 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVSEG-----PPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDSKVIEILDSQTEIYQYV 101 (204)
T ss_pred cCCcccCCCCcEEEEEeccCCC-----CCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhheEeeEecCCCceEEEEE
Confidence 3677777777777766544322 46789999999999999999999873 34566799999999999999988
Q ss_pred eecCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecC
Q 004624 250 LYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 328 (741)
Q Consensus 250 ~~~~~~P~~vspRDFV~lR~wrr~-~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~k 328 (741)
+.+ |||+++||||++|.|+.. ++|.|+|..+|+.|+.+|+. +|||....+||+|+|++++ +|+|||++|+|||
T Consensus 102 ~~~---PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~~DPg 175 (204)
T cd08908 102 QNS---MAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCRIDLR 175 (204)
T ss_pred ccC---CCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEEeCCC
Confidence 764 678999999999999864 78899999999999999975 6999999999999999765 8999999999999
Q ss_pred Ccccc-ccccchhhHHHHHHHHHHHHHHHHH
Q 004624 329 CWRSY-LQPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 329 Gwip~-~~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
|++|. +.|.+++.|+. .+.+||+.|.
T Consensus 176 G~iP~W~~N~~g~~~~~----~~~~~r~sf~ 202 (204)
T cd08908 176 GHMPEWYTKSFGHLCAA----EVVKIRDSFS 202 (204)
T ss_pred CCCcHHHHhhHHHHHHH----HHHHHHhhcc
Confidence 99999 46677777765 4667999985
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.92 E-value=1.1e-23 Score=206.60 Aligned_cols=151 Identities=32% Similarity=0.522 Sum_probs=135.7
Q ss_pred CCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhcCC------CCeeEEEEEEeecCceEEEE
Q 004624 174 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLG------ASRSVGCVVEHLDGHTDIIH 247 (741)
Q Consensus 174 s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d~d------~~r~e~~VVE~ID~~tdIvY 247 (741)
.+|++..+++|++||.+..+. +...++|++++|++++++|+++|.+.+ ....++++|+++++++.|+|
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~ 88 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED------SGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIY 88 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC------CCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEE
Confidence 589999999999999998764 346899999999999999999999843 23445999999999999999
Q ss_pred EEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeec
Q 004624 248 KQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDW 327 (741)
Q Consensus 248 ~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~ 327 (741)
.+++. |+++++||||+++++...++|.++++.+|+.|+.+|+.+++|||.+..+||+|+|+++ ++|++||++++|+
T Consensus 89 ~~~~~---p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~-~~~~vt~~~~~D~ 164 (193)
T cd00177 89 YKTKP---PWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP-GKTKVTYVLQVDP 164 (193)
T ss_pred EEeeC---CCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC-CCEEEEEEEeeCC
Confidence 98875 5679999999999999887789999999999999999999999999999999999965 4899999999999
Q ss_pred CCccccc
Q 004624 328 KCWRSYL 334 (741)
Q Consensus 328 kGwip~~ 334 (741)
+||+|.+
T Consensus 165 ~g~iP~~ 171 (193)
T cd00177 165 KGSIPKS 171 (193)
T ss_pred CCCccHH
Confidence 9999974
No 24
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.92 E-value=2.8e-24 Score=218.83 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=139.4
Q ss_pred cCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEec-CCHHHHHHHHhcCCCCeeE-----EEEEEeecCceEE
Q 004624 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSV-----GCVVEHLDGHTDI 245 (741)
Q Consensus 172 a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVd-aspe~Vf~~L~d~d~~r~e-----~~VVE~ID~~tdI 245 (741)
+.++|+++..++||+||++..++ +..+.||++++++ +++++++++|+|.+. |.+ .+++++.+++++|
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~~~~~~~~~~~~~~i 95 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLEY-RKQWDQYVKELYEKECDGETV 95 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHHHHHhheeecCCCCEE
Confidence 34679999999999999997765 4568999999998 799999999999542 211 2477888889999
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEEEEEc-CCC--eEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEE
Q 004624 246 IHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 322 (741)
Q Consensus 246 vY~~~~~~~~P~~vspRDFV~lR~wrr~-~DG--syVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i 322 (741)
+|+.++ +|||+++||||++|+++.. .+| .++|+++|+.||.+|+.+|+||+....++|+|+|.+++ +|+++|+
T Consensus 96 ~y~~~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i~~~ 171 (207)
T cd08910 96 IYWEVK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKVFMY 171 (207)
T ss_pred EEEEEE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEEEEE
Confidence 999876 4789999999999888754 233 47889999999999999999999999999999998654 7999999
Q ss_pred EeeecCCccccc-cccchhhHHHHHHHHHHHHHHHH
Q 004624 323 LAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 357 (741)
Q Consensus 323 ~qvD~kGwip~~-~~~~~~~~~~~mL~~Va~LRe~~ 357 (741)
.+.||+||+|.+ ++.+....+.. .+..||+-.
T Consensus 172 ~~~DPgG~IP~wlvN~~~~~~~~~---~l~~l~ka~ 204 (207)
T cd08910 172 YFDNPGGMIPSWLINWAAKNGVPN---FLKDMQKAC 204 (207)
T ss_pred EEeCCCCcchHHHHHHHHHHhhHH---HHHHHHHHH
Confidence 999999999985 44444444433 344666544
No 25
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.91 E-value=2.7e-23 Score=211.45 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=142.7
Q ss_pred CCcEEEEeeCC----eEEEEeccCCCCCCCCCCccEEEEEEEe-cCCHHHHHHHHhcC------CCCeeEEEEEEeecC-
Q 004624 174 SPWTIFGCQNG----LRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSL------GASRSVGCVVEHLDG- 241 (741)
Q Consensus 174 s~Wkl~~~~nG----VrVy~~~~~~~~~~~~~~~~~~Ka~gvV-daspe~Vf~~L~d~------d~~r~e~~VVE~ID~- 241 (741)
.+|+++..++| |+||++..++ +.+..||+++++ ++|+++++++|+|. +....+.++|+..++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~ 95 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG------TGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKS 95 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC------CCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCC
Confidence 68999999999 9999998775 346899999999 56999999999994 445667999998554
Q ss_pred ceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecC-CCCeeEEE
Q 004624 242 HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVK 320 (741)
Q Consensus 242 ~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~-~~~~~~VT 320 (741)
+++|+|+.++ +|||+++||||+.|.++...+|.++|+.+|+.||.+|+. |+||+....++|+|+|+. ++.+|.++
T Consensus 96 ~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~ 171 (209)
T cd08870 96 GTEIVRWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQGSACE 171 (209)
T ss_pred CcEEEEEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCCceEEE
Confidence 5899999876 578999999999998877768899999999999999999 999999999999999993 33489999
Q ss_pred EEEeeecCCcccccc-ccchhhHHHHHHHHHHHHHHHH
Q 004624 321 HMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELF 357 (741)
Q Consensus 321 ~i~qvD~kGwip~~~-~~~~~~~~~~mL~~Va~LRe~~ 357 (741)
|+.+.||+|++|.++ +.+.... +...+..||+-+
T Consensus 172 ~~~~~dp~G~IP~wlvN~~~~~~---~~~~l~~l~~a~ 206 (209)
T cd08870 172 VTYFHNPDGGIPRELAKLAVKRG---MPGFLKKLENAL 206 (209)
T ss_pred EEEEECCCCCCCHHHHHHHHHhh---hHHHHHHHHHHH
Confidence 999999999999864 3333333 334555777655
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.91 E-value=3e-23 Score=207.21 Aligned_cols=175 Identities=21% Similarity=0.309 Sum_probs=144.5
Q ss_pred ccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhcCCC------CeeEEEEEEeecCc
Q 004624 169 DVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGH 242 (741)
Q Consensus 169 ~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~ 242 (741)
......+|+++.+++|++||++..++ +....+|++++|+++|++|++++.|.+. ...++++||+++++
T Consensus 12 ~~~~~~~W~~~~~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~ 85 (195)
T cd08876 12 ALAPDGDWQLVKDKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDN 85 (195)
T ss_pred ccCCCCCCEEEecCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCC
Confidence 34445569999999999999998664 2358999999999999999999999653 34569999999998
Q ss_pred eEEEEEEeecCCCCCCCCCCeEEEEEEEEEcC-CCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEE
Q 004624 243 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKH 321 (741)
Q Consensus 243 tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~-DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~ 321 (741)
++++|..+.+ ||++++||||+.+.++... +|.++|...|+.|+ +|+.+||||+....+||.|+|++++ +|+|||
T Consensus 86 ~~i~~~~~~~---p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~vt~ 160 (195)
T cd08876 86 ERSVYTVIDL---PWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTRVTY 160 (195)
T ss_pred cEEEEEEEec---ccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEEEEE
Confidence 9999998764 5779999999998777654 78999999999998 8999999999999999999999854 899999
Q ss_pred EEeeecCCcccccc-ccchhhHHHHHHHHHHHHHHHH
Q 004624 322 MLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALRELF 357 (741)
Q Consensus 322 i~qvD~kGwip~~~-~~~~~~~~~~mL~~Va~LRe~~ 357 (741)
++++||+||+|.++ +...... +...+++||+..
T Consensus 161 ~~~~dp~g~iP~~lv~~~~~~~---~~~~l~~l~~~~ 194 (195)
T cd08876 161 QAYADPGGSIPGWLANAFAKDA---PYNTLENLRKQL 194 (195)
T ss_pred EEEeCCCCCCCHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 99999999999853 3333333 334555777653
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.88 E-value=5e-22 Score=202.67 Aligned_cols=181 Identities=20% Similarity=0.286 Sum_probs=150.2
Q ss_pred ccccccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhcC------CCCeeEEEEEEe
Q 004624 165 QVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSL------GASRSVGCVVEH 238 (741)
Q Consensus 165 ~~~~~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d~------d~~r~e~~VVE~ 238 (741)
.+..++.+.++|++...++|++||.+..++ +..+.+|++|+|+++++.++++|.+. .+...++++|++
T Consensus 13 ~~~~~l~~~~~W~~~~~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~ 86 (215)
T cd08877 13 ENLKDLDESDGWTLQKESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQ 86 (215)
T ss_pred HHHhcccCCCCcEEeccCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEee
Confidence 455667778899999999999999998664 34689999999999999998888874 345677899999
Q ss_pred ecCceEEEEEEeecCCCCCCCCCCeEEEEEE-EEEc-CCCeEEEEEEccCCCC---------CCCCC-CeEeEEEeceeE
Q 004624 239 LDGHTDIIHKQLYSDWLPWGMKRRDLLLRRY-WRRE-DDGTYVILYHSVFHKK---------CPRQK-GSVRACLKSGGY 306 (741)
Q Consensus 239 ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~-wrr~-~DGsyVI~~~SV~Hp~---------~Pp~k-G~VRaei~~sGy 306 (741)
++.++.|+|+.+. +|||+++||+|+... ..+. ++|.++|+..|+.|+. +|+.+ |+||+....+||
T Consensus 87 ~~~~~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~ 163 (215)
T cd08877 87 LGRADKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGF 163 (215)
T ss_pred cCCceEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceE
Confidence 9999999999876 578999999998632 3333 7899999999999876 79999 999999999999
Q ss_pred EEEecCCCCeeEEEEEEeeecCCc-cccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004624 307 VITPMNHGKKSVVKHMLAIDWKCW-RSYL-QPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 307 vI~Pl~~~~~~~VT~i~qvD~kGw-ip~~-~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
+|+|++++ +|.++|++++||||+ +|.+ ++.+.+.++..++. +||+.++
T Consensus 164 ~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~---~l~k~~~ 213 (215)
T cd08877 164 VITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFE---KIQKAAK 213 (215)
T ss_pred EEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 99999865 899999999999998 9984 55556666666555 5655443
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.75 E-value=3.2e-17 Score=165.88 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=132.3
Q ss_pred cccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEe-cCCHHHHHHHHhcCC------CCeeEEEEEEeec-C
Q 004624 170 VIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLG------ASRSVGCVVEHLD-G 241 (741)
Q Consensus 170 ~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvV-daspe~Vf~~L~d~d------~~r~e~~VVE~ID-~ 241 (741)
+.+..+|+++.+++++.||....+.+ ....||+.++. ++||+.|+++++|.+ ....+.++||... -
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~~------g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~t 98 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPKT------GLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVT 98 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccCC------CCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCC
Confidence 56778999999999999999543432 26799999985 589999999999953 3445578888754 4
Q ss_pred ceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEE-ec--CCCCeeE
Q 004624 242 HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVIT-PM--NHGKKSV 318 (741)
Q Consensus 242 ~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~-Pl--~~~~~~~ 318 (741)
+++|+|+..+ +|.++++||||++|.|...++-.|+|+.+||.|+..|+.+++||+.+.-+||+|+ +. ++++.|.
T Consensus 99 g~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~ 175 (219)
T KOG2761|consen 99 GTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCA 175 (219)
T ss_pred CceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccE
Confidence 7899999876 5789999999999888766546799999999999999999999999999999999 55 4566899
Q ss_pred EEEEEeeecCCcccccc
Q 004624 319 VKHMLAIDWKCWRSYLQ 335 (741)
Q Consensus 319 VT~i~qvD~kGwip~~~ 335 (741)
+.|+.+.|++|-+|.++
T Consensus 176 ~~~~~~~~p~~~iP~~~ 192 (219)
T KOG2761|consen 176 CEYLYFHNPGGGIPKWV 192 (219)
T ss_pred EEEEEEECCCCCCcHHH
Confidence 99999999999999754
No 29
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.49 E-value=1.3e-13 Score=125.89 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=75.5
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecce---EEecCCccccccceeEEEEEEeC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI---RVTDNGRESIHRKVFFIFTLYNT 88 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~---~V~d~gr~~~~~~~~yvf~i~~~ 88 (741)
+||||.+.|... ..-+++|||||+++.|+||| +|.+ ..|.|.+.|+.++ .|.+.-.....++..|.|.|..+
T Consensus 1 KeG~L~K~g~~~--~k~wkkRwFvL~~~~L~Yyk-~~~d--~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~ 75 (103)
T cd01251 1 KEGFMEKTGPKH--TEGFKKRWFTLDDRRLMYFK-DPLD--AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP 75 (103)
T ss_pred CceeEEecCCCC--CCCceeEEEEEeCCEEEEEC-CCCC--cCcCcEEEeeccccceeEeccCCccccccccceEEEEeC
Confidence 599999999752 22368999999999999999 4544 7899999988654 35321011112334469999875
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 89 SNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 89 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
+|+|.|.|.|.+|++.||+||+.|+.
T Consensus 76 ---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999975
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.45 E-value=1.9e-12 Score=133.52 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=107.5
Q ss_pred ccEEEEEEEecCCHHHHHHHHhcCCC-------CeeEEEEEEeecC--------ceEEEEEEeecCCCCCCCCCCeEEEE
Q 004624 203 HPAIMAVGVVDGTSEAIFQTLMSLGA-------SRSVGCVVEHLDG--------HTDIIHKQLYSDWLPWGMKRRDLLLR 267 (741)
Q Consensus 203 ~~~~Ka~gvVdaspe~Vf~~L~d~d~-------~r~e~~VVE~ID~--------~tdIvY~~~~~~~~P~~vspRDFV~l 267 (741)
+-+=|+.++|...|..|.+.|||.+. ....+++++.|+. ...++|.+++... ..+++|||++|
T Consensus 59 ~eASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS--pLVp~Re~~fL 136 (229)
T cd08875 59 TEASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS--PLVPTREFYFL 136 (229)
T ss_pred EEEEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc--ccccCCeEEEE
Confidence 45678999999999999999999543 1223666666643 3788999988642 46899999999
Q ss_pred EEEEEcCCCeEEEEEEccCCC-CCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCcc
Q 004624 268 RYWRREDDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWR 331 (741)
Q Consensus 268 R~wrr~~DGsyVI~~~SV~Hp-~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwi 331 (741)
||.++.+||+++|+-+|+++. ..|+.++++|++.++|||+|+|+.+| .|+|||+-|+|..-|.
T Consensus 137 Ryc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 137 RYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCCc
Confidence 999999999999999999998 68888999999999999999999877 8999999999998873
No 31
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.45 E-value=4.6e-13 Score=119.85 Aligned_cols=95 Identities=18% Similarity=0.316 Sum_probs=74.7
Q ss_pred cceeeEEEEeec-ccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCC
Q 004624 11 RMEGWLHLIRSN-RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 11 ~~eGwl~~~g~~-~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
|+||||++++.. ++....+++|||||+|+.|.|||.+ .+ ..|.+.+.|.+|..... .+. +..|+|.|..
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~-~~--~~~~~~I~L~~~~v~~~--~~~---~k~~~F~I~~-- 70 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSK-QD--EKAEGLIFLSGFTIESA--KEV---KKKYAFKVCH-- 70 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCC-CC--CccceEEEccCCEEEEc--hhc---CCceEEEECC--
Confidence 689999999753 2245679999999999999999944 33 67999999999844322 122 2458999964
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 90 ~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
++.+.+.|+|.|.||+.+||+||..|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34599999999999999999999876
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.40 E-value=1.9e-12 Score=113.21 Aligned_cols=91 Identities=25% Similarity=0.446 Sum_probs=73.5
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
|||||++.+... ..+++|||||+++.|.||+.+.... ..|.+.+.|++|...++.+ .-++|.|... +
T Consensus 1 ~~G~L~k~~~~~---~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01246 1 VEGWLLKWTNYL---KGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDS-------DDKCFTIDTG--G 67 (91)
T ss_pred CeEEEEEecccC---CCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCC-------CCcEEEEEcC--C
Confidence 799999997632 5589999999999999999655322 4899999999986444432 1488999864 4
Q ss_pred CceEEEecCCHHHHHHHHHHHHHH
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
++.+.|.|.|.+|+..|+.||+.|
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC
Confidence 599999999999999999999876
No 33
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=6.5e-12 Score=113.11 Aligned_cols=91 Identities=24% Similarity=0.362 Sum_probs=72.2
Q ss_pred ceeeEEEEeecccccccceeeEEEEe--cceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~--g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
+.|||.+.|....... +++|||||+ ++.|.||| ++.+ ..|+|++-+.+++.+.+.. + .-+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~-WkkRWFvL~~~~~~L~Yyk-~~~d--~~p~G~I~L~~~~~~~~~~-~-----~~~~F~i~t-- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRG-RRSRWFALDDRTCYLYYYK-DSQD--AKPLGRVDLSGAAFTYDPR-E-----EKGRFEIHS-- 68 (95)
T ss_pred CcccEEEecCCCCCcC-ceeEEEEEcCCCcEEEEEC-CCCc--ccccceEECCccEEEcCCC-C-----CCCEEEEEc--
Confidence 4699999998655444 689999998 45899999 4444 7899999999986654321 1 135788865
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 90 ~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
.++.+.|.|.|.+|+..||+||+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999987
No 34
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.29 E-value=1.9e-11 Score=111.63 Aligned_cols=91 Identities=23% Similarity=0.467 Sum_probs=73.7
Q ss_pred CcceeeEEEEeecccccccceeeEEEEecc------eeeccccCCCCC--CCCCceEEEeecceEEecCCccccccceeE
Q 004624 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFF 81 (741)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~------~l~~yk~~p~~~--~~~Pi~~~vid~~~~V~d~gr~~~~~~~~y 81 (741)
+.++|||.+.++ +|+|||||++. .|.|||.+...+ ...|.|++-+++|..|..+-. .-| -|
T Consensus 2 v~k~GyL~K~K~-------~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~---~~ 70 (101)
T cd01257 2 VRKSGYLRKQKS-------MHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH---RH 70 (101)
T ss_pred ccEEEEEeEecC-------cEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc---Ce
Confidence 578999999633 68999999999 899999766432 268999999999998875321 212 28
Q ss_pred EEEEEeCCCCCceEEEecCCHHHHHHHHHHHHH
Q 004624 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
+|.|+.+ ++++-|+|.|.+|++.|++||.+
T Consensus 71 ~f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 9999884 48999999999999999999964
No 35
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.29 E-value=1.6e-11 Score=112.75 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=77.9
Q ss_pred ceeeEEEEe--ecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCcccc---ccceeEEEEEE
Q 004624 12 MEGWLHLIR--SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI---HRKVFFIFTLY 86 (741)
Q Consensus 12 ~eGwl~~~g--~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~---~~~~~yvf~i~ 86 (741)
.||||++++ ..++|+.-+++|||||++..|.|||.++.. ...|.|++-|.++..|+.-.-+.. +.+.-|.|.|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~ 80 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV 80 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc-ccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence 689999996 444677678999999999999999965532 357999999999877775333221 22345899997
Q ss_pred eCCCCCceEEEecCCHHHHHHHHHHHHH
Q 004624 87 NTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 87 ~~~~~~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
.. ++.+.|.|.|.+|++.|++||++
T Consensus 81 t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 81 HD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred eC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 74 57899999999999999999975
No 36
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.28 E-value=2.1e-11 Score=110.68 Aligned_cols=96 Identities=14% Similarity=0.242 Sum_probs=74.3
Q ss_pred CcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEe-cCCccccccceeEEEEEEeC
Q 004624 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTLYNT 88 (741)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~-d~gr~~~~~~~~yvf~i~~~ 88 (741)
+.++|||.+.|... .-+++|||||+++.|+|||.+. +..|++.+-|..+ .|+ +.+.+...|+ .++|.|..
T Consensus 2 v~k~G~L~Kkg~~~---k~WkkRwfvL~~~~L~yyk~~~---~~~~~~~I~L~~~-~v~~~~~~~~~~~~-~~~F~I~t- 72 (100)
T cd01233 2 VSKKGYLNFPEETN---SGWTRRFVVVRRPYLHIYRSDK---DPVERGVINLSTA-RVEHSEDQAAMVKG-PNTFAVCT- 72 (100)
T ss_pred cceeEEEEeeCCCC---CCcEEEEEEEECCEEEEEccCC---CccEeeEEEeccc-EEEEccchhhhcCC-CcEEEEEC-
Confidence 45899999998853 3378999999999999999644 3789999999955 554 2222222222 37899954
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 89 ~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
.++.+.|.|.|.+|+..||+||..++
T Consensus 73 --~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 --KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred --CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 57999999999999999999998763
No 37
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.24 E-value=4.7e-11 Score=104.50 Aligned_cols=100 Identities=28% Similarity=0.466 Sum_probs=79.5
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccc--cccceeEEEEEEeC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRES--IHRKVFFIFTLYNT 88 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~--~~~~~~yvf~i~~~ 88 (741)
.+||||++++ .+..-+++|||||.++.|.|||.........|.+.+-++++ .|.+..... .....-++|.|.++
T Consensus 2 ~~~G~L~~~~---~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS---SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE---SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC---CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999999 33334679999999999999996653334899999999999 665432221 23356689999988
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 89 ~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
.. +.+.|.|.|.+|+..|++||+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 54 899999999999999999999985
No 38
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.24 E-value=6.2e-11 Score=111.58 Aligned_cols=97 Identities=22% Similarity=0.408 Sum_probs=75.5
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~ 90 (741)
++||||++.|... .-+++|||||+++.|.||| .+.+ ..|.+++.|+++..+.... . ..-+.|.|+...+
T Consensus 1 ~k~G~L~K~~~~~---~~WkkRwfvL~~~~L~yyk-~~~~--~~~~g~I~L~~~~v~~~~~----~-~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLLKQGGRV---KTWKRRWFILTDNCLYYFE-YTTD--KEPRGIIPLENVSIREVED----P-SKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEEEeCCCC---CCeEeEEEEEECCEEEEEc-CCCC--CCceEEEECCCcEEEEccc----C-CCCeeEEEECCcc
Confidence 5799999988642 4478999999999999999 4433 7899999999875433211 1 2347899988664
Q ss_pred ------------------CCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 91 ------------------HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 91 ------------------~~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
..+.+.|.|.|.+|+..||.||+.++..
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 2367889999999999999999999763
No 39
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.22 E-value=7.3e-11 Score=105.71 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=70.8
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
++|||+|.|.--- =+++|||||++..|.|||.++.. ...|.|++-+.+|+.+.+.. .-..|.|... .
T Consensus 1 ~~G~L~K~~~~~k---~Wk~RwFvL~~g~L~Yyk~~~~~-~~~~~G~I~L~~~~i~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01247 1 TNGVLSKWTNYIN---GWQDRYFVLKEGNLSYYKSEAEK-SHGCRGSIFLKKAIIAAHEF-------DENRFDISVN--E 67 (91)
T ss_pred CceEEEEeccccC---CCceEEEEEECCEEEEEecCccC-cCCCcEEEECcccEEEcCCC-------CCCEEEEEeC--C
Confidence 5899999996422 35699999999999999976643 35689999999987665421 1256777543 3
Q ss_pred CceEEEecCCHHHHHHHHHHHHH
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
++.+.|.|.|.+|...|++||++
T Consensus 68 ~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 68 NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CeEEEEEeCCHHHHHHHHHHHhh
Confidence 59999999999999999999985
No 40
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.21 E-value=8.3e-11 Score=105.63 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=72.4
Q ss_pred ceeeEEEEeecccccccceeeEEEEecc--eeeccccCCCCCCCCCceEEEeecceEEecC----CccccccceeEEEEE
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDH--FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN----GRESIHRKVFFIFTL 85 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~--~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~----gr~~~~~~~~yvf~i 85 (741)
.||||.|.|... .-+++|||||.++ .|.|||.. . +..|.+++-|..++.|... |... |...-+.|.|
T Consensus 1 ~~G~L~K~g~~~---k~WkkRwFvL~~~~~~L~Yy~~~-~--~~~~~g~I~L~~~~~v~~~~~~~~~~~-~~~~~~~f~i 73 (101)
T cd01235 1 CEGYLYKRGALL---KGWKPRWFVLDPDKHQLRYYDDF-E--DTAEKGCIDLAEVKSVNLAQPGMGAPK-HTSRKGFFDL 73 (101)
T ss_pred CeEEEEEcCCCC---CCccceEEEEECCCCEEEEecCC-C--CCccceEEEcceeEEEeecCCCCCCCC-CCCCceEEEE
Confidence 589999999642 3467999999954 99999944 3 3789999999998887642 1222 2223466777
Q ss_pred EeCCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 86 ~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
.. +.+.+.|.|.|.||+..|++||+.+|
T Consensus 74 ~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 74 KT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred Ee---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 53 56899999999999999999998864
No 41
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.18 E-value=1.3e-10 Score=102.18 Aligned_cols=94 Identities=24% Similarity=0.434 Sum_probs=70.7
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
|||||++.+... ...+++|||||+++.|.||+..+.. ...|.+++-+..| .|....... +.-++|.|....
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~---~~~~~f~i~~~~-- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDY-DNAHVKEIDLRRC-TVRHNGKQP---DRRFCFEVISPT-- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCccc-ccccceEEeccce-EEecCcccc---CCceEEEEEcCC--
Confidence 799999987543 4568899999999999999965532 2567777777766 444221111 234899998653
Q ss_pred CceEEEecCCHHHHHHHHHHHHHH
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
+.+.|.|.|.+|+.+|+.||++|
T Consensus 72 -~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 -KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred -cEEEEECCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 42
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.17 E-value=3e-10 Score=97.44 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=80.6
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~ 90 (741)
.++|||+++... +.+-+++|||+|.++.|.||+.++......|.+.+.|+++ .|........+ ..-+.|.|.++..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~-~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSA-KKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccC-CCceEEEEEecCC
Confidence 589999998875 6667899999999999999997776444788999999999 66544332222 3348999987643
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 91 ~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
..+.|.|.|.+|+..|+.+|+.++
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999885
No 43
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.17 E-value=1.4e-10 Score=106.69 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=73.7
Q ss_pred eeeEEEEeeccc-ccccceeeEEEEecce-------eeccccCCCCCCCCCceEEEeecceEEecCCcc--ccccceeEE
Q 004624 13 EGWLHLIRSNRI-GLQYSRKRYFLLEDHF-------LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--SIHRKVFFI 82 (741)
Q Consensus 13 eGwl~~~g~~~~-g~~~~~~RyfvL~g~~-------l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~--~~~~~~~yv 82 (741)
||||.+.|.... +..-+++|||||+++- |.|||. +.+ ..|.+++-|+.|..|++ |.. .-+...-|+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~-~~~--~k~~g~I~L~~~~~v~~-~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKT-SRK--FKLEFVIDLESCSQVDP-GLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECC-CCC--CccceEEECCccEEEcc-cccccccCcccceE
Confidence 899999987543 5667899999999875 599994 433 79999999999866643 221 111233488
Q ss_pred EEEEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 83 f~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
|.|.- ..|.+-|+|.|.||+..||+||.+.
T Consensus 78 f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 88883 5799999999999999999999753
No 44
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.15 E-value=2e-10 Score=104.98 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=75.5
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCc-eEEEeecceEEecCCccccccceeEEEEEEeCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi-~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~ 90 (741)
.||||-+.|.+=-..--+|+|||+|+||.|.|||+++. ..|. +++.+..|..|..-....-+..-.|.|.|..+
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~---~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp-- 76 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSK---DDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA-- 76 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCc---cCCCCceEEcccceEEeeccccccccccCcEEEEEcC--
Confidence 48999998875334555799999999999999996664 3455 78889999777753222211122589999655
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHH
Q 004624 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 91 ~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
++++.|.|.|.+|++.|+++|..|
T Consensus 77 -~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 77 -DKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred -CceEEEEeCCHHHHHHHHHHHHhh
Confidence 599999999999999999999987
No 45
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.15 E-value=3.4e-10 Score=115.94 Aligned_cols=101 Identities=12% Similarity=-0.012 Sum_probs=77.1
Q ss_pred EEEEEEeecCce----EEEEEEeecCCCCCCCCCCeEEEEEE-EEEcC-CCeEEEEEEccCCCCCC-CCCCeEeEEEece
Q 004624 232 VGCVVEHLDGHT----DIIHKQLYSDWLPWGMKRRDLLLRRY-WRRED-DGTYVILYHSVFHKKCP-RQKGSVRACLKSG 304 (741)
Q Consensus 232 e~~VVE~ID~~t----dIvY~~~~~~~~P~~vspRDFV~lR~-wrr~~-DGsyVI~~~SV~Hp~~P-p~kG~VRaei~~s 304 (741)
++++|+..++.. .|+|..++ +|||+++|||+.+.. ....+ ...++++..++.|+.+| +.+|||||.-..+
T Consensus 76 ~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~y~Sg 152 (208)
T cd08864 76 DLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGRYASV 152 (208)
T ss_pred eeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEEEEEE
Confidence 467888887665 78887765 588999999999977 32222 25789999999999999 8999999995444
Q ss_pred -eEEEEecCCCCeeEEEEEE--eeecCCcccccc
Q 004624 305 -GYVITPMNHGKKSVVKHML--AIDWKCWRSYLQ 335 (741)
Q Consensus 305 -GyvI~Pl~~~~~~~VT~i~--qvD~kGwip~~~ 335 (741)
-|.+.|++....+.|+|++ +.|++|+||.|+
T Consensus 153 E~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl 186 (208)
T cd08864 153 EKISYLPDADGKSNKVEWIMATRSDAGGNIPRWL 186 (208)
T ss_pred EEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHH
Confidence 4555565422356777777 999999999864
No 46
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.12 E-value=2.8e-10 Score=104.51 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=74.3
Q ss_pred ceeeEEEEeecc------cccccceeeEEEEe-cceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEE
Q 004624 12 MEGWLHLIRSNR------IGLQYSRKRYFLLE-DHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFT 84 (741)
Q Consensus 12 ~eGwl~~~g~~~------~g~~~~~~RyfvL~-g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~ 84 (741)
+.|||++.+..+ ...-=+++|||||+ +.+|+||+.++.+ ..|.|++-|..|..|.+- -+ ..++ -+.|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~G~IdL~~~~~V~~~-~~-~~~~-~~~f~ 75 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQGTIDMNQCTDVVDA-EA-RTGQ-KFSIC 75 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccceEEEccceEEEeec-cc-ccCC-ccEEE
Confidence 579999998874 45566899999997 6899999866533 689999989999888742 21 1222 47888
Q ss_pred EEeCCCCCceEEEecCCHHHHHHHHHHHH
Q 004624 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (741)
Q Consensus 85 i~~~~~~~~~~~~~a~~~eea~~W~~a~~ 113 (741)
|-.. +|.+-|.|.|.+|++.|+++|.
T Consensus 76 I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 76 ILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 8654 6999999999999999999986
No 47
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.12 E-value=3.2e-10 Score=103.42 Aligned_cols=95 Identities=26% Similarity=0.412 Sum_probs=67.7
Q ss_pred CcceeeEEEEeecccccccceeeEEEEe-cceeeccccCCCCC--CCCCceEEEeecceEEecCCccccccceeEEEEEE
Q 004624 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLY 86 (741)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~RyfvL~-g~~l~~yk~~p~~~--~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~ 86 (741)
+.+||||.+.|. ...-+++|||||+ +..|.|||.+|.+. +..|++...+.+|..+.... ..-+.|.|-
T Consensus 1 v~k~G~L~K~g~---~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~------~~~~~F~i~ 71 (102)
T cd01241 1 VVKEGWLHKRGE---YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTER------PRPNTFIIR 71 (102)
T ss_pred CcEEEEEEeecC---CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccC------CCcceEEEE
Confidence 358999999997 3444679999999 67788888788653 25788888888875433210 223778886
Q ss_pred eCC---CCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 87 NTS---NHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 87 ~~~---~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
... ...| +|.|.|.||++.||+||+.+
T Consensus 72 ~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred eccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 322 1223 56799999999999999876
No 48
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.01 E-value=1.4e-09 Score=102.58 Aligned_cols=104 Identities=20% Similarity=0.363 Sum_probs=75.9
Q ss_pred CcceeeEEEEeecccccccceeeEEEEecceeeccccCCCC-CCCCCceEEEeecceEEe--cCCccccccceeEEEEEE
Q 004624 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIRVT--DNGRESIHRKVFFIFTLY 86 (741)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~-~~~~Pi~~~vid~~~~V~--d~gr~~~~~~~~yvf~i~ 86 (741)
++|.|||......+ |..-+++|||||+|+.|.||| +|.+ ....|++++-|.+|+... +--|+...+.--|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 57899999876554 788899999999999999999 5654 337899999999997733 223344333434555544
Q ss_pred eCCC---------------CCceEEEecCCHHHHHHHHHHHHHH
Q 004624 87 NTSN---------------HNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 87 ~~~~---------------~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
.... ..-.+-|+|.|.||...|++||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 3221 1123679999999999999999764
No 49
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.4e-09 Score=111.53 Aligned_cols=97 Identities=31% Similarity=0.540 Sum_probs=78.3
Q ss_pred CCcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecc-eE-EecCCccccccceeEEEEEE
Q 004624 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSC-IR-VTDNGRESIHRKVFFIFTLY 86 (741)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~-~~-V~d~gr~~~~~~~~yvf~i~ 86 (741)
.++.||||++.|.| +---|.+|||||..|+|+||+ .-. |++|-|.+.+..- +| |+|- +..|.|.||
T Consensus 259 npdREGWLlKlgg~--rvktWKrRWFiLtdNCLYYFe-~tT--DKEPrGIIpLeNlsir~VedP-------~kP~cfEly 326 (395)
T KOG0930|consen 259 NPDREGWLLKLGGN--RVKTWKRRWFILTDNCLYYFE-YTT--DKEPRGIIPLENLSIREVEDP-------KKPNCFELY 326 (395)
T ss_pred CccccceeeeecCC--cccchhheeEEeecceeeeee-ecc--CCCCCcceeccccceeeccCC-------CCCCeEEEe
Confidence 46799999999997 444578999999999999999 333 3889888877653 33 6653 567999999
Q ss_pred eCCCCCc-------------------eEEEecCCHHHHHHHHHHHHHHHH
Q 004624 87 NTSNHND-------------------QLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 87 ~~~~~~~-------------------~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
+..++.. .|++.|-|+||+..||++++.++.
T Consensus 327 ~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 327 IPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred cCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 9887443 478999999999999999999876
No 50
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.92 E-value=4.7e-09 Score=98.82 Aligned_cols=97 Identities=24% Similarity=0.419 Sum_probs=77.4
Q ss_pred ceeeEEEEeecccccc---------------cceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCcc---
Q 004624 12 MEGWLHLIRSNRIGLQ---------------YSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--- 73 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~---------------~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~--- 73 (741)
+||||++++.-+.-.+ -+++|||||++..|.||+ +|.+ ..|.+.+++|....|+..+.+
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~-~~~~--~~~~~vil~D~~f~v~~~~~~~~~ 77 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMD-DPSS--AQILDVILFDVDFKVNGGGKEDIS 77 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEc-CCCC--CceeeEEEEcCCccEEeCCccccc
Confidence 5899998865544211 248999999999999999 5644 799999999999999866554
Q ss_pred ------ccccceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 74 ------SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 74 ------~~~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
-.++ .-|.|+|-| .+|+++|.|.|.+++..|++||+.|
T Consensus 78 ~~~~~~~~~~-~~~~~~i~t---~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 78 LAVELKDITG-LRHGLKITN---SNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ccccccccCC-CceEEEEEc---CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1133 358999955 5799999999999999999999876
No 51
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.88 E-value=8.6e-09 Score=92.75 Aligned_cols=95 Identities=23% Similarity=0.374 Sum_probs=72.6
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceE--EecCCccccccceeEEEEEEeCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR--VTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~--V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
.-|||-..+.. +...=++.|||||..+.|.|||..- +++|...+.+|+.+. || .|- .+ +- |+|.+||+.
T Consensus 3 rkgwl~~~n~~-~m~ggsK~~WFVLt~~~L~wykd~e---eKE~kyilpLdnLk~Rdve-~gf--~s-k~-~~FeLfnpd 73 (110)
T cd01256 3 RKGWLSISNVG-IMKGGSKDYWFVLTSESLSWYKDDE---EKEKKYMLPLDGLKLRDIE-GGF--MS-RN-HKFALFYPD 73 (110)
T ss_pred eeeeEEeeccc-eecCCCcceEEEEecceeeeecccc---cccccceeeccccEEEeec-ccc--cC-CC-cEEEEEcCc
Confidence 56999875544 2223368999999999999999333 389999999998743 33 232 22 22 999999865
Q ss_pred -----CCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 90 -----NHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 90 -----~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
...++++|+|.|+||++.|+-+|-.|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 34589999999999999999999888
No 52
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.88 E-value=4.6e-09 Score=95.58 Aligned_cols=92 Identities=21% Similarity=0.202 Sum_probs=67.4
Q ss_pred eeeEEEEeecccccccceeeEEEEec----ceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeC
Q 004624 13 EGWLHLIRSNRIGLQYSRKRYFLLED----HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (741)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~RyfvL~g----~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~ 88 (741)
-|||.+.|.+ . .--+++|||+|.+ +.|.||+..+ + .+|++.+.+..+ .|... -+..-|+ .|.|.|++.
T Consensus 2 ~G~l~K~g~~-~-~K~wK~rwF~l~~~~s~~~l~yf~~~~-~--~~p~gli~l~~~-~V~~v-~ds~~~r-~~cFel~~~ 73 (98)
T cd01245 2 KGNLLKRTKS-V-TKLWKTLYFALILDGSRSHESLLSSPK-K--TKPIGLIDLSDA-YLYPV-HDSLFGR-PNCFQIVER 73 (98)
T ss_pred CCccccCCCC-c-ccccceeEEEEecCCCCceEEEEcCCC-C--CCccceeecccc-EEEEc-cccccCC-CeEEEEecC
Confidence 4999998863 1 3347899999998 9999999544 3 789985556665 55432 1111122 399999998
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHH
Q 004624 89 SNHNDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 89 ~~~~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
..| ..|.|+|.+ ||++.||++|+.
T Consensus 74 ~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 74 ALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 654 677888888 999999999975
No 53
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.83 E-value=2.6e-08 Score=90.41 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=67.3
Q ss_pred ceeeEEEEee-----cccccccceeeEEEEecceeeccccCCCCCCCCCce--EEEeecceEEecCCccccccceeEEEE
Q 004624 12 MEGWLHLIRS-----NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVR--SAIIDSCIRVTDNGRESIHRKVFFIFT 84 (741)
Q Consensus 12 ~eGwl~~~g~-----~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~--~~vid~~~~V~d~gr~~~~~~~~yvf~ 84 (741)
|||+|+++-. ++.+...+++|||||+|+.|.|||.+.... +.+.+ .+-+++++...+..-. +.-++|+
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~~i~~~~~~~----k~~~~F~ 75 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGAQCEVASDYT----KKKHVFR 75 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCCEEEecCCcc----cCceEEE
Confidence 6899996644 455677899999999999999999443221 22222 3335555332222111 1238999
Q ss_pred EEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 85 i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
|... +++.+.|.|.|.+++..|+.||+.|
T Consensus 76 l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 76 LRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 9864 6799999999999999999999753
No 54
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.81 E-value=3.5e-08 Score=89.92 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=73.2
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCC-C-CCCceEEEeecceEEecCCccccccceeEEEEEEeC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-N-EDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~-~-~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~ 88 (741)
.+||||.+++...-+ ++.|||+|-...|-|++.++... . -.+...+-++++ .|++. .+....+.|.|..+
T Consensus 3 ikeG~L~K~~~~~~~---~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~-~v~~~----~~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTTEK---TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM-QVCEG----DNLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCCCC---ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE-EEEeC----CCCCcCceEEEecC
Confidence 489999999876533 45999999988999999665321 1 244455668885 66643 13345688998554
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 89 SNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 89 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
. +.+.+.|.|+||.+.||+||+.|+++
T Consensus 75 ~---rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 Q---RCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred C---cEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 3 99999999999999999999999874
No 55
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.80 E-value=3.3e-08 Score=84.69 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=73.0
Q ss_pred ceeeEEEEeeccc-ccccceeeEEEEecceeeccccCCCCCCCCCc-eEEEeecceEEecCCccccccceeEEEEEEeCC
Q 004624 12 MEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 12 ~eGwl~~~g~~~~-g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi-~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
.+|||++++.... +...+++|||+|.++.|.||+.++.. .+. +..-+.+.. |....... +.-++|.|.+..
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~---~~~~~~~~l~~~~-v~~~~~~~---~~~~~F~i~~~~ 73 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKK---EIKPGSIPLSEIS-VEEDPDGS---DDPNCFAIVTKD 73 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCC---cCCCCEEEccceE-EEECCCCC---CCCceEEEECCC
Confidence 4799999988754 45667899999999999999966633 222 345555553 55432221 235899998875
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 90 ~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
.+.+.+.|.|.|.+|+..||+||++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 74 RGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 56899999999999999999999875
No 56
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=98.78 E-value=6.3e-09 Score=114.86 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=119.3
Q ss_pred cccccccCCCcEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEE-ecCCHHHHHHHHhcC------CCCeeEEEEEEe
Q 004624 166 VTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGV-VDGTSEAIFQTLMSL------GASRSVGCVVEH 238 (741)
Q Consensus 166 ~~~~~~a~s~Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gv-Vdaspe~Vf~~L~d~------d~~r~e~~VVE~ 238 (741)
.+.++.....|+++....-+++|++..+..+. ..-..|+.-. +-+++.++.....+. +.+...+.|||+
T Consensus 395 ~~~~~g~d~nwqlFaeegemkmy~re~eeng~----~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~ 470 (611)
T KOG1739|consen 395 SLQDVGGDANWQLFAEEGEMKMYRREVEENGI----VLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVET 470 (611)
T ss_pred hcccccccchhhhhcccCCccccceeeccCCc----ccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeee
Confidence 44455556679999999999999998775321 1113455443 446888888877653 333334999999
Q ss_pred ecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEc----CC--CeEEEEEEccCCCCCCCCCCeEeEEEece--------
Q 004624 239 LDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE----DD--GTYVILYHSVFHKKCPRQKGSVRACLKSG-------- 304 (741)
Q Consensus 239 ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~----~D--GsyVI~~~SV~Hp~~Pp~kG~VRaei~~s-------- 304 (741)
|.+++-|+|.+.+-. ||.++||-.++.+.|+- ++ +.|++|+.||+|.+.|-...+||+.+..+
T Consensus 471 is~d~~~~~qthkrv---wpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~ 547 (611)
T KOG1739|consen 471 ISDDAIIIYQTHKRV---WPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVS 547 (611)
T ss_pred ecCCeEEEEeccccc---CCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccC
Confidence 999999999887655 68999999999777763 23 47999999999999999999999976432
Q ss_pred -eEEEEecC-CCCeeEEEEEEeeecCCcccc
Q 004624 305 -GYVITPMN-HGKKSVVKHMLAIDWKCWRSY 333 (741)
Q Consensus 305 -GyvI~Pl~-~~~~~~VT~i~qvD~kGwip~ 333 (741)
+++=+|++ +.-.|++||+.+++|+||.|.
T Consensus 548 ~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 548 PPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred CcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 22223331 234899999999999999994
No 57
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.76 E-value=3.1e-08 Score=84.14 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=74.2
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
++|||++..... .+-+++|||+|.++.|.+|+..+......|.+.+.|+++......+.+ +..++|.|.....
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~----~~~~~f~i~~~~~- 73 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS----GRKNCFEIRTPDG- 73 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcC----CCCcEEEEecCCC-
Confidence 589999988755 455679999999999999996654334788889999985433332222 2358899987643
Q ss_pred CceEEEecCCHHHHHHHHHHHHHH
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
+.+.|.|.|.+|+.+|+.+|+.|
T Consensus 74 -~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 -RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred -cEEEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 58
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.76 E-value=2.1e-08 Score=93.20 Aligned_cols=95 Identities=31% Similarity=0.471 Sum_probs=53.9
Q ss_pred ceeeEEEEeecccccccceeeEEEEe-cceeeccccCCCCCC------CCCceEEEeecceE------Eec----CCccc
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSKN------EDPVRSAIIDSCIR------VTD----NGRES 74 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~-g~~l~~yk~~p~~~~------~~Pi~~~vid~~~~------V~d----~gr~~ 74 (741)
+|||||+.+.. +|.. +++|||||+ ++.|.|||- |.+.. +.+.+.+.-+...+ +.. +-.+.
T Consensus 1 k~G~l~K~~~~-~~kg-Wk~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKG-WKKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcC-ccccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999998775 7777 689999999 999999995 32210 12222222111111 110 12333
Q ss_pred cccceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 75 IHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 75 ~~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
+|.++ |.| ...++++-|-|.+.+|...|++||+.|
T Consensus 78 ~~~~~---~~i---~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKV---FSI---FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEE---EEE---E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCC---cEE---ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 44444 444 346899999999999999999999986
No 59
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.75 E-value=2.5e-08 Score=91.56 Aligned_cols=91 Identities=18% Similarity=0.335 Sum_probs=72.7
Q ss_pred ecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCC-CCCceEEEec
Q 004624 21 SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS-NHNDQLKLGA 99 (741)
Q Consensus 21 ~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~-~~~~~~~~~a 99 (741)
..++..-=+++|||+|+|+.|+|||.+...+ .+|+..+-+-||....|.- +-.+ -|.+++-... ++.+.+.|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~lnl~gcev~~dv~---~~~~-kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLNLKGCEVTPDVN---VAQQ-KFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEecCceEEccccc---cccc-ceEEEEecCCccCCeEEEEEC
Confidence 3445555568999999999999999877554 7999999999996666631 1112 3999998764 6778999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004624 100 SSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 100 ~~~eea~~W~~a~~~a~ 116 (741)
.|.++-++||.|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999993
No 60
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.73 E-value=6e-08 Score=88.35 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=66.6
Q ss_pred ccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCCCceEEEecCCH
Q 004624 23 RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSP 102 (741)
Q Consensus 23 ~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~~~~~~~~a~~~ 102 (741)
+.+.+ +++|||+|.++.|.||| .|. ..|++++-|..-.-|+..+-.... .-|+|.|... ++.+-|-|.|.
T Consensus 16 ~~~~n-~KkRwF~Lt~~~L~Y~k-~~~---~~~~g~I~L~~i~~ve~v~~~~~~--~~~~fqivt~---~r~~yi~a~s~ 85 (98)
T cd01244 16 KKVLH-FKKRYFQLTTTHLSWAK-DVQ---CKKSALIKLAAIKGTEPLSDKSFV--NVDIITIVCE---DDTMQLQFEAP 85 (98)
T ss_pred ccCcC-CceeEEEECCCEEEEEC-CCC---CceeeeEEccceEEEEEcCCcccC--CCceEEEEeC---CCeEEEECCCH
Confidence 45654 69999999999999999 342 679999998888778766554432 2489999775 47999999999
Q ss_pred HHHHHHHHHHHHH
Q 004624 103 EEAAKWIHSLQEA 115 (741)
Q Consensus 103 eea~~W~~a~~~a 115 (741)
+|+..|++||+.+
T Consensus 86 ~E~~~Wi~al~k~ 98 (98)
T cd01244 86 VEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999863
No 61
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.52 E-value=6.7e-07 Score=81.60 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=69.8
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCC-CCCceEEEeecceEEecCCccccccceeEEEEEEeCC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN-EDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~-~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
.+||||.+..++ +. ++|||+|=...|=|+.+.+.++. -.+.+.+-+++. .|++.-- ..+..+.|.||.+
T Consensus 3 ikEG~L~K~~~k--~~---~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~-~V~~~~~---~~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKK--GL---QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGM-LTEESEH---EWGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCC--CC---ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCce-EEeeccC---CcCCceeEEEEcC-
Confidence 379999998874 33 36777776666667776665421 246667778888 5665211 1245689999954
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 90 NHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 90 ~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
.+.+.|.|.|++|...||++|+.||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 58899999999999999999999986
No 62
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.33 E-value=4.5e-06 Score=78.49 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=73.4
Q ss_pred ceeeEEEEe-------ecccccccceeeEEEEecceeeccccCCCCC---C-CCCceEEEeecce-EEecCCccccccce
Q 004624 12 MEGWLHLIR-------SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---N-EDPVRSAIIDSCI-RVTDNGRESIHRKV 79 (741)
Q Consensus 12 ~eGwl~~~g-------~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~---~-~~Pi~~~vid~~~-~V~d~gr~~~~~~~ 79 (741)
+||+|+++- ..+.|..+|++||-||+|+.|..||.+-... . ..+-..+-|.+++ .+.-. ..+-
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~d-----y~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASD-----YSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeecc-----ccCC
Confidence 589999874 2235678999999999999999999664210 0 1223455588886 44421 2345
Q ss_pred eEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 80 FFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 80 ~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
-+||+|-.. ..+.+-|-|.+.||+.+|+.+|..|+.
T Consensus 77 ~~VF~L~~~--~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTA--DWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 589999764 678999999999999999999999875
No 63
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.29 E-value=3e-06 Score=75.91 Aligned_cols=85 Identities=28% Similarity=0.447 Sum_probs=56.9
Q ss_pred eeEEEEeecccccccceeeEEEE--ecceeeccccCCCCCCCCCceEEEeecceE-EecCCccccccceeEEEEEEeCCC
Q 004624 14 GWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFKSVPHSKNEDPVRSAIIDSCIR-VTDNGRESIHRKVFFIFTLYNTSN 90 (741)
Q Consensus 14 Gwl~~~g~~~~g~~~~~~RyfvL--~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~-V~d~gr~~~~~~~~yvf~i~~~~~ 90 (741)
|||.|+++++ +|=+++||||| +.-.|.||+ .+.+ ...-+++.|..+++ +....+++ .| +.
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~-~~~~--~~~rGsi~v~~a~is~~~~~~~I---------~i-ds-- 63 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYR-NQNS--GKLRGSIDVSLAVISANKKSRRI---------DI-DS-- 63 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEe-cCCC--CeeEeEEEccceEEEecCCCCEE---------EE-Ec--
Confidence 8999988875 33357999999 999999999 4433 22234444444433 22222222 22 22
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHH
Q 004624 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 91 ~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
+...+-|=|.|.+|...|+.||+.|
T Consensus 64 g~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 64 GDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 3556777799999999999999987
No 64
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=97.98 E-value=9.8e-05 Score=69.57 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=84.5
Q ss_pred EEEEEecCCHHHHHHHHhcCCC------CeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEE
Q 004624 207 MAVGVVDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVI 280 (741)
Q Consensus 207 Ka~gvVdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI 280 (741)
+.+..|++|+++||++|.|.+. ...++++++.-+ +...++.... ++...|+|+....+. .+.. |
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~--i 71 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVG-----FGGIRESFTSRVTLV--PPES--I 71 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEe-----eccccEEEEEEEEec--CCCE--E
Confidence 4567899999999999999643 344588888765 4455565443 234578887654443 2332 3
Q ss_pred EEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004624 281 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 281 ~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~-~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
...++.. +-....+.|.++|++++ +|+|+|.++.+++|.+|.+ .+.+....+.+++. ++++.+.
T Consensus 72 ~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~---~f~~~~~ 136 (138)
T cd07813 72 EAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVD---AFEKRAK 136 (138)
T ss_pred EEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 4455533 22234689999999864 7999999999999998874 33444555554443 5665544
No 65
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=97.97 E-value=0.00017 Score=72.97 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=81.1
Q ss_pred cCCHHHHHHHHhcCC--------CCeeEEEEEEee----------cCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcC
Q 004624 213 DGTSEAIFQTLMSLG--------ASRSVGCVVEHL----------DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED 274 (741)
Q Consensus 213 daspe~Vf~~L~d~d--------~~r~e~~VVE~I----------D~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~ 274 (741)
.++-+++...|.+-- +.....+.|++. +....|.+..++ +|++.++|||+.|-......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 566677777666521 112236777777 445555555543 68899999999996554333
Q ss_pred ---------CCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEec------CCCCeeEEEEEEeeecCCcccccc
Q 004624 275 ---------DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM------NHGKKSVVKHMLAIDWKCWRSYLQ 335 (741)
Q Consensus 275 ---------DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl------~~~~~~~VT~i~qvD~kGwip~~~ 335 (741)
...|+|+...+.|+.+|+.+|+|||.-..=-. |+-+ ++.+.-.=++.+..|++|++|.|+
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~SVE~-ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYESVER-IRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEEEEEE-EEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHH
Confidence 34799999999999999999999997754333 3333 223344555566789999999875
No 66
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.69 E-value=0.0011 Score=62.37 Aligned_cols=135 Identities=10% Similarity=0.096 Sum_probs=73.6
Q ss_pred EEEEEecCCHHHHHHHHhcCCC------CeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEE
Q 004624 207 MAVGVVDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVI 280 (741)
Q Consensus 207 Ka~gvVdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI 280 (741)
+++..|++||+.||++|.|.+. ...++++++.-++ ...+|.......+.... +.-|.++... ..+....+
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~~~~i 77 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGN-RVVLEQTGKQGILFFKF--EARVVLELRE-REEFPREL 77 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCC-EEEEEEeeeEEEEeeee--eEEEEEEEEE-ecCCCceE
Confidence 5788999999999999999653 3455788877433 33344321100000000 0111111111 11101112
Q ss_pred EEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004624 281 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 281 ~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~-~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
.++.+.. -+ ....+.|.++|++++.+|+|+|.+++++++.+|.. .+.+.... +...+.+||+.++
T Consensus 78 ~~~~~~g--------~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~---~~~~l~~lr~~ae 143 (144)
T cd08866 78 DFEMVEG--------DF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQD---LPTNLLAIRAEAE 143 (144)
T ss_pred EEEEcCC--------ch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 2222211 01 23468899999976347999999999999999873 33333333 3344557887654
No 67
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.55 E-value=0.00047 Score=64.77 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=60.5
Q ss_pred ceeeEEEEee-----ccc--ccccceeeEEEEecceeeccccCC--CC---------CCCCCceEEEeecceEEecCCcc
Q 004624 12 MEGWLHLIRS-----NRI--GLQYSRKRYFLLEDHFLKSFKSVP--HS---------KNEDPVRSAIIDSCIRVTDNGRE 73 (741)
Q Consensus 12 ~eGwl~~~g~-----~~~--g~~~~~~RyfvL~g~~l~~yk~~p--~~---------~~~~Pi~~~vid~~~~V~d~gr~ 73 (741)
+||||+++-. .+. +..-|+.=|.||+|..|.+||... .. +...|+.++-|.+++--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY- 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY- 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB-
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc-
Confidence 6999999632 223 555588899999999999999632 10 1135677788888855333222
Q ss_pred ccccceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 74 SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 74 ~~~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
. +--+||+|- .....++-|-|.|.+||..|+.+|.-++
T Consensus 81 --~-Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 --T-KRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp --T-TCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred --c-cCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 1 244788886 4568899999999999999999998774
No 68
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.55 E-value=0.00016 Score=66.25 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=65.9
Q ss_pred ceeeEEEEeecccccccceeeEEEEecce-----eeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEE--
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHF-----LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFT-- 84 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~-----l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~-- 84 (741)
++|||++.|.+.. -=+++|||||.|-- +-.|+.|. .+|-..+.+||. .|.- .+...++-.+-+.
T Consensus 4 ~sGyL~k~Gg~~~--KkWKKRwFvL~qvsQYtfamcsy~ekk----s~P~e~~qldGy-TvDy--~~~~~~~~~~~~~~~ 74 (117)
T cd01234 4 HCGYLYAIGKNVW--KKWKKRFFVLVQVSQYTFAMCSYREKK----AEPTEFIQLDGY-TVDY--MPESDPDPNSELSLQ 74 (117)
T ss_pred eeEEEEeccchhh--hhhheeEEEEEchhHHHHHHHhhhhhc----CCchhheeecce-EEec--cCCCCCCcccccccc
Confidence 7999999998433 34689999999642 33455454 567778899999 4432 2222221111111
Q ss_pred ----EEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 85 ----LYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 85 ----i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
++|.-...+.++||+.+..|---|++|+=.|
T Consensus 75 gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 75 GGRHFFNAVKEGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred cchhhhheeccCcEEEEeccchHHHHHHHHHHHHH
Confidence 1345578899999999999999999999998
No 69
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.50 E-value=2e-05 Score=89.70 Aligned_cols=91 Identities=26% Similarity=0.292 Sum_probs=77.1
Q ss_pred CCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccccc
Q 004624 257 WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQP 336 (741)
Q Consensus 257 ~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~ 336 (741)
.|+..|||+++| |.++++..||+|...++..| |||.+..+.|+|+|++.+ +++|+|++.+|+||..|.|++
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 468899999999 78999999999987777778 999999999999999887 789999999999999999665
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHhc
Q 004624 337 -SSARSITIRMLGRVAALRELFRAK 360 (741)
Q Consensus 337 -~~~~~~~~~mL~~Va~LRe~~~~~ 360 (741)
.|.+.|.. .++.+|+.|...
T Consensus 645 k~fg~~c~~----~~~~~r~sf~~~ 665 (674)
T KOG2200|consen 645 KSFGHLCCL----EVARIRDSFHTL 665 (674)
T ss_pred ccccchhhh----hhcccchhhccc
Confidence 46665543 466788877643
No 70
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.50 E-value=0.0011 Score=62.74 Aligned_cols=101 Identities=24% Similarity=0.252 Sum_probs=68.9
Q ss_pred eeeEEEEeecc--cccccceeeEEEEec--ceeeccccCCCCCC--CCCceEEEeecceEEecCCccccccc----eeEE
Q 004624 13 EGWLHLIRSNR--IGLQYSRKRYFLLED--HFLKSFKSVPHSKN--EDPVRSAIIDSCIRVTDNGRESIHRK----VFFI 82 (741)
Q Consensus 13 eGwl~~~g~~~--~g~~~~~~RyfvL~g--~~l~~yk~~p~~~~--~~Pi~~~vid~~~~V~d~gr~~~~~~----~~yv 82 (741)
-.||||+.++. .+..=.|.|||-|.. ..|.....+|.... ..=.+++.|+.-..|.+.- ..--|. --|+
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~-~~~~~~~~~~~~~s 90 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGN-PSPPGLKKPDHNKS 90 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCC-CCCccccccccceE
Confidence 35999998876 112347899999999 66777777775311 2334566677776676542 111111 2244
Q ss_pred EEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 83 f~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
|.|. ...|.++|.|.|.++++-|+.||+..++
T Consensus 91 i~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 91 IIIV---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEEE---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 5444 3568999999999999999999998754
No 71
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.13 E-value=0.004 Score=58.77 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=73.1
Q ss_pred CcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCC---CCCCceEEEe-ecceEEecCC----ccccccceeE
Q 004624 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---NEDPVRSAII-DSCIRVTDNG----RESIHRKVFF 81 (741)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~---~~~Pi~~~vi-d~~~~V~d~g----r~~~~~~~~y 81 (741)
..|||||=.-..+++.+. |.++|.||.+.-|+.|...+... ..+|.-++-+ |+-+-|.--+ ...-..+..|
T Consensus 2 t~~EGwvkvP~~~~~krG-W~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKG-WQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccC-ceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 469999977666554443 56999999999999999544321 1344444445 5665553221 2333446789
Q ss_pred EEEEEe----CCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 82 IFTLYN----TSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 82 vf~i~~----~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
+|+|-. ..-....+-|-|.|..|-.+|..||++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 999965 3334578889999999999999999986
No 72
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.06 E-value=0.019 Score=53.30 Aligned_cols=129 Identities=12% Similarity=0.161 Sum_probs=72.5
Q ss_pred EEEEEEEecCCHHHHHHHHhcCCC------CeeEEEEEEeecCc-eEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCe
Q 004624 205 AIMAVGVVDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGH-TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 277 (741)
Q Consensus 205 ~~Ka~gvVdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~-tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGs 277 (741)
.+.....|++||++||++|.|.+. ...++++++.-+.. ....+..... .+.+. +|+.-..+ .+.
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~--~~~-- 73 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGA----YGIKD-TYALEYTW--DGA-- 73 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEee----eeEEE-EEEEEEEE--cCC--
Confidence 356778899999999999999653 22335555443322 2234433221 12221 34422222 122
Q ss_pred EEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCcccccc-ccchhhHHHHHHHHHHHHHHH
Q 004624 278 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALREL 356 (741)
Q Consensus 278 yVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~-~~~~~~~~~~mL~~Va~LRe~ 356 (741)
..|..+.+... +.....+.|.++|.++ .|+|+|.++.+++|.+|.++ +...+..+. +.+.+||++
T Consensus 74 ~~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~ 139 (140)
T cd07819 74 GSVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLD---EALKGLKKR 139 (140)
T ss_pred CcEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHH---HHHHhHhhh
Confidence 22444444321 2223346899999976 59999999999999998743 223333333 334466664
No 73
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.05 E-value=0.0027 Score=59.39 Aligned_cols=95 Identities=15% Similarity=0.338 Sum_probs=62.4
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecC-CccccccceeEEEEEEeCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN-GRESIHRKVFFIFTLYNTSN 90 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~-gr~~~~~~~~yvf~i~~~~~ 90 (741)
+||||.|+-..--. .+++|++|+.|.+.||+..- +..|.|.+-+--=+.|+.. |--...+...|.|.|--
T Consensus 2 kEGWmVHyT~~d~~---rKRhYWrLDsK~Itlf~~e~---~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T--- 72 (117)
T cd01239 2 KEGWMVHYTSSDNR---RKKHYWRLDSKAITLYQEES---GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT--- 72 (117)
T ss_pred ccceEEEEecCccc---eeeeEEEecCCeEEEEEcCC---CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe---
Confidence 69999998765433 35899999999999999644 3566666666666666532 22223345667777732
Q ss_pred CCceEEE--------------------ecCCHHHHHHHHHHHHHH
Q 004624 91 HNDQLKL--------------------GASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 91 ~~~~~~~--------------------~a~~~eea~~W~~a~~~a 115 (741)
.+..|-+ .....+-|..|-.|+++|
T Consensus 73 ~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 73 TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 1122222 234567789999999886
No 74
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.92 E-value=0.0085 Score=55.83 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=69.3
Q ss_pred cceeeEEEEeeccc-ccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCC----ccccccceeEEEEE
Q 004624 11 RMEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG----RESIHRKVFFIFTL 85 (741)
Q Consensus 11 ~~eGwl~~~g~~~~-g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g----r~~~~~~~~yvf~i 85 (741)
.|||||=.-..++. +.+=|.++|.||.+.-|+.|.......+..|.-.+=+|.-+-|..-. ...-..+..|+|+|
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred CcceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 38999977666443 11224499999999999999944432223454433333322221110 22223467899999
Q ss_pred EeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 86 ~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
--. +.++.+-|-|.|.+|-.+|..||..-|.
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 665 4579999999999999999999986543
No 75
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.86 E-value=0.016 Score=54.07 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=69.4
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCc-eEEEeecceEEec--CCcccc-ccceeEEEEEEe
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTD--NGRESI-HRKVFFIFTLYN 87 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi-~~~vid~~~~V~d--~gr~~~-~~~~~yvf~i~~ 87 (741)
++|=|.++..++.-.| .|+|.|=.++|=|=|++-...+.-=. +.+.++.+ .|.+ .|++.. +...-+.|.||+
T Consensus 4 ~~Gel~~~s~~~g~~q---~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~-~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQNKGWNS---SRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRC-EVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEecccCCcc---cEEEEEecceEEEEecccccCCcEEEEEEEEcccE-EEEECCCCccccCCceeEEEEEEEE
Confidence 5677777665433334 89999999999888865332222222 34457777 5553 476653 335678999999
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHH
Q 004624 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 88 ~~~~~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
. .++..+.|.|.|+|+-.+||+||+.
T Consensus 80 ~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 E-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred c-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 8 4778899999999999999999975
No 76
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.84 E-value=0.02 Score=53.40 Aligned_cols=137 Identities=9% Similarity=-0.070 Sum_probs=74.0
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCC-e--eEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEE
Q 004624 206 IMAVGVVDGTSEAIFQTLMSLGAS-R--SVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILY 282 (741)
Q Consensus 206 ~Ka~gvVdaspe~Vf~~L~d~d~~-r--~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~ 282 (741)
++.+..+++||++||++|.|.+.- . ..++-++.++++...++.+... ++.+.|.-...+.....++..|++..
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKV----GPVKGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcEEEEEE
Confidence 567888999999999999995431 1 1133344455554445544332 23333433223333222333444443
Q ss_pred EccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHH-HHHHHHHHHH
Q 004624 283 HSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML-GRVAALRELF 357 (741)
Q Consensus 283 ~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL-~~Va~LRe~~ 357 (741)
..... .+.....+-|.++|.++ +|+|+|-.+++++|.+..+..........+++ ..+.+||+.+
T Consensus 79 ~~~~~---------~~~~~~~~~~~l~~~~~--gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 79 EGKGG---------AGFVKGTARVTLEPDGG--GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEcCC---------CceEEEEEEEEEEecCC--cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111 12234457899999843 69999999999999763222222233333322 3344566543
No 77
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.79 E-value=0.0032 Score=58.68 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=73.1
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceE-EecCCccccccceeEEEEEEeCC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIR-VTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~-V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
+.|||||.+.. |..=|.+|||||++.=|+|.-+-.....+.-..-+.++++-. ..-.|++.+....-|.|.|--..
T Consensus 1 e~~g~LylK~~---gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYLKAD---GKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEEccC---CCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 36999999754 555567999999999998877333222233345555666533 44567999999999999994433
Q ss_pred C---CCceE-EEecCCHHHHHHHHHHHHHHH
Q 004624 90 N---HNDQL-KLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 90 ~---~~~~~-~~~a~~~eea~~W~~a~~~a~ 116 (741)
. .++-+ .|.|++.+....|+-||+-|+
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 1 13444 467889999999999999884
No 78
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.69 E-value=0.0024 Score=69.39 Aligned_cols=99 Identities=28% Similarity=0.469 Sum_probs=68.3
Q ss_pred CCcceeeEEEEeecccccccceeeEEEEe--cceeeccccCCCCCC--CCCceEEEeecc-eEEecCCccccccceeEEE
Q 004624 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKSFKSVPHSKN--EDPVRSAIIDSC-IRVTDNGRESIHRKVFFIF 83 (741)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~RyfvL~--g~~l~~yk~~p~~~~--~~Pi~~~vid~~-~~V~d~gr~~~~~~~~yvf 83 (741)
.+.+||||.++|++- ..||.|||+|+ |.++- ||.+|.+.+ ..|+---.|-.| +|-.|+-|-. ++-+=
T Consensus 14 ~vvkEgWlhKrGE~I---knWRpRYF~l~~DG~~~G-yr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPn----tFiiR 85 (516)
T KOG0690|consen 14 DVVKEGWLHKRGEHI---KNWRPRYFLLFNDGTLLG-YRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPN----TFIIR 85 (516)
T ss_pred hhHHhhhHhhcchhh---hcccceEEEEeeCCceEe-eccCCccCCCCcccccchhhhhhhhhhccCCCCc----eEEEE
Confidence 455999999999973 34789999996 56664 566998633 588887776555 3444553332 44444
Q ss_pred EEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 84 ~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
++-...--.| +|.+.|++|-+.|++|++..+.
T Consensus 86 cLQWTTVIER--TF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 86 CLQWTTVIER--TFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeeee--eeecCCHHHHHHHHHHHHHHhh
Confidence 4443332222 5889999999999999998765
No 79
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.58 E-value=0.02 Score=52.97 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=63.9
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~ 90 (741)
.+||=|.++-+ -+.+ .|||+|=...|=|=+..+..+.-..-+.+-++++ .|++.-- ...+...|.|.++
T Consensus 5 i~eG~L~K~~r--k~~~---~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~-~v~~~~d---~~~~~n~f~I~~~-- 73 (104)
T cd01218 5 VGEGVLTKMCR--KKPK---QRQFFLFNDILVYGNIVISKKKYNKQHILPLEGV-QVESIED---DGIERNGWIIKTP-- 73 (104)
T ss_pred EecCcEEEeec--CCCc---eEEEEEecCEEEEEEeecCCceeeEeeEEEccce-EEEecCC---cccccceEEEecC--
Confidence 47899988763 4455 7899999998888443222110011122336665 4443210 1234578999886
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 91 HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 91 ~~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
.+...+.|.|++|-..||++|++|+++
T Consensus 74 -~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 -TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999985
No 80
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=96.47 E-value=0.043 Score=51.46 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=69.1
Q ss_pred EEEEecCCHHHHHHHHhcCCCC-----eeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEE--EEEEEcCCCeEEE
Q 004624 208 AVGVVDGTSEAIFQTLMSLGAS-----RSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR--RYWRREDDGTYVI 280 (741)
Q Consensus 208 a~gvVdaspe~Vf~~L~d~d~~-----r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~l--R~wrr~~DGsyVI 280 (741)
...+|++||++||++|.|.+.. ....++++. ++....++.. .+..+++.+. ..+.....+.. |
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~~-~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~-i 72 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAERWPEFLPTVHVERLEL-DGGVERLRMW--------ATAFDGSVHTWTSRRVLDPEGRR-I 72 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEEE-cCCEEEEEEE--------EEcCCCcEEEEEEEEEEcCCCCE-E
Confidence 4578999999999999996531 123555554 3443344421 1222333221 11111222222 3
Q ss_pred EEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 004624 281 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 281 ~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
....+.-+ + +-...-+-|.++|.+++ +|+|+|.+..++++.+|-........+...+-..+++||++++
T Consensus 73 ~~~~~~~~------~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 73 VFRQEEPP------P--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred EEEEeeCC------C--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 33333210 1 11223468999999754 7999999999999987721111111121223344667777654
No 81
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.46 E-value=0.0054 Score=73.52 Aligned_cols=109 Identities=17% Similarity=0.370 Sum_probs=82.4
Q ss_pred CCCCcceeeEEEEeecccccccceeeEEEEecceeeccccCCCC-CCCCCceEEEeecceE--EecCCccccccc-eeEE
Q 004624 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIR--VTDNGRESIHRK-VFFI 82 (741)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~-~~~~Pi~~~vid~~~~--V~d~gr~~~~~~-~~yv 82 (741)
...+.|-|+||..-.. =|.-=||+||-+|.|+...|+| .|.| ..+.||+.+=+-.||. ||.- ++-+.++ .-|-
T Consensus 987 ~idVEYrGFLtmfed~-sgfGaWhRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a-~rdicar~ntFh 1063 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDG-SGFGAWHRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEA-RRDICARPNTFH 1063 (1116)
T ss_pred ccceeeeeeeeeeecc-CCCchhhhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccc-hhhhccCCceeE
Confidence 3456799999999854 5666699999999999999999 8887 5589999999999998 6654 3333333 2344
Q ss_pred EEEEeCCCCC--------c-eEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 83 FTLYNTSNHN--------D-QLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 83 f~i~~~~~~~--------~-~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
+.++-.+... | +.-|||.+.||-+.|+.+|-.+..+
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 4433333211 3 7889999999999999999998653
No 82
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.39 E-value=0.0016 Score=57.84 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=65.3
Q ss_pred eeeEEEEeecccccccceeeEEEEecceeeccccCCCCC-CCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 13 EGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~-~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
||+||+..... .++||.||.|+++-||..|.... +.--+++-++-.- +|+ |.+....--+-.|-|.-....
T Consensus 1 EGYLY~~E~~s-----i~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~P-m~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSS-----IQRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSHP-MVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccch-----HHHHHHhhhhceeEEecccCCceeeeeehhhhhhhcc-ccc--ccccCCCCCeeEEEEEEecCC
Confidence 79999976643 35999999999999999777421 1222333333222 333 344443334566777777778
Q ss_pred CceEEEecCCHHHHHHHHHHHHH
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
.+++++=|.|.|-+.+|++++-.
T Consensus 73 ~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred cchhhhhhhHHHHHHHHHHHhcC
Confidence 89999999999999999998853
No 83
>PLN02866 phospholipase D
Probab=96.18 E-value=0.025 Score=69.65 Aligned_cols=100 Identities=20% Similarity=0.406 Sum_probs=72.5
Q ss_pred cceeeEEEE------e-ecccc------ccc----ceeeEEEEecceeeccccCCCCCCCCCceEEEeec----------
Q 004624 11 RMEGWLHLI------R-SNRIG------LQY----SRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS---------- 63 (741)
Q Consensus 11 ~~eGwl~~~------g-~~~~g------~~~----~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~---------- 63 (741)
-+||.+.++ | ..+.+ .++ |.|||||||...|.|.+ +|.+ ..|+-.++.|-
T Consensus 183 ~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~-~p~~--~~~~~v~lfD~~~~~~~~~~~ 259 (1068)
T PLN02866 183 LKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLE-DPFD--AKPLDIIVFDVLPASNGNGEG 259 (1068)
T ss_pred cceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEe-cCCC--CceeEEEEEecccccccCCCc
Confidence 389999998 2 12221 122 56899999999999998 7866 67999999993
Q ss_pred ceEEecCCccccccceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 64 CIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 64 ~~~V~d~gr~~~~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
.+.+.....|. ...-|.|+|-| .+|+++|=|.|..+|..|+.|++.|..+
T Consensus 260 ~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 260 QISLAKEIKER--NPLRFGFKVTC---GNRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred ceeeccccccc--CCCcceEEEec---CceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 33333222222 23446788854 5788999999999999999999999753
No 84
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=96.11 E-value=0.21 Score=46.19 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=67.3
Q ss_pred ecCCHHHHHHHHhcCCC------CeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEcc
Q 004624 212 VDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSV 285 (741)
Q Consensus 212 Vdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV 285 (741)
|++|+++||++|.|.+. ...++++|+.-++++.+ +.... ....++.|+.......... +....+
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~ 70 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRA-RWEVK-----FGGIKRSWTSRVTEDPPER----IRFEQI 70 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEE-EEEEC-----TTTTCEEEEEEEEEECTTT----EEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEE-EEEEe-----cCCEEEEEEEEEEEEEeee----eeeeec
Confidence 68999999999999653 45668999887764444 32222 2234466655444443322 222222
Q ss_pred CCCCCCCCCCeEeEEEeceeEEEEecCC---CCeeEEEEEEeeecCCccccc
Q 004624 286 FHKKCPRQKGSVRACLKSGGYVITPMNH---GKKSVVKHMLAIDWKCWRSYL 334 (741)
Q Consensus 286 ~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~---~~~~~VT~i~qvD~kGwip~~ 334 (741)
.|-. ...-+.|.++|.++ +.+|.|++.+..++++.+|..
T Consensus 71 --------~g~~--~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~ 112 (130)
T PF03364_consen 71 --------SGPF--KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGF 112 (130)
T ss_dssp --------ETTE--EEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHH
T ss_pred --------CCCc--hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHH
Confidence 1222 34468999999986 678999999999999999863
No 85
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=95.96 E-value=0.014 Score=66.73 Aligned_cols=100 Identities=22% Similarity=0.320 Sum_probs=66.1
Q ss_pred CCCCcceeeEEEEeecccccccceeeEEEEecceeecccc-CCCCCCCCCceEEE--eecceEEecCCccccccceeEEE
Q 004624 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHSKNEDPVRSAI--IDSCIRVTDNGRESIHRKVFFIF 83 (741)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~-~p~~~~~~Pi~~~v--id~~~~V~d~gr~~~~~~~~yvf 83 (741)
.+.+.++||+++++... . +++|||.|.++.+..... .|...+..|-.+.+ +..++=|..- . -...-++|
T Consensus 374 ~sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~--~--~~~~~~~~ 445 (478)
T PTZ00267 374 TSDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEV--Y--SQKHPNQL 445 (478)
T ss_pred cCCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHH--h--cCCCCceE
Confidence 34567999999988742 2 679999999887776533 44332233333333 5666555210 0 11235778
Q ss_pred EEEeCCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 84 ~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
.|.++. .+++-+-|.|.+|.+.||+||+.|+
T Consensus 446 ~i~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFNN--GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEecC--CcEEEEecCChHHHHHHHHHHHHHh
Confidence 885543 5577788899999999999999984
No 86
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.84 E-value=0.069 Score=50.15 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=65.6
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCC--------ceE-EEeecceEEecCCccccccceeE
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDP--------VRS-AIIDSCIRVTDNGRESIHRKVFF 81 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~P--------i~~-~vid~~~~V~d~gr~~~~~~~~y 81 (741)
.+||=|.++...+--. +.|||+|=.++|=|=|++..-. ..| ++. ..++.. .|.|.. . +...-+
T Consensus 5 I~EG~L~ki~~~~~~~---q~R~~FLFd~~Li~CK~~~~~~-~~~g~~~~~y~~k~~~~l~~~-~V~d~~--d-~~~~kn 76 (112)
T cd01261 5 IMEGTLTRVGPSKKAK---HERHVFLFDGLMVLCKSNHGQP-RLPGASSAEYRLKEKFFMRKV-DINDKP--D-SSEYKN 76 (112)
T ss_pred cccCcEEEEecccCCc---ceEEEEEecCeEEEEEeccCcc-cccccccceEEEEEEEeeeee-EEEEcC--C-CcccCc
Confidence 4899999988765333 4899999999998888654211 111 111 223332 444321 1 123468
Q ss_pred EEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
.|.|.++. .+.+.|-|.|+||-..||+||..++.
T Consensus 77 aF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 77 AFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred eEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 89999763 46899999999999999999999865
No 87
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.62 E-value=0.1 Score=48.33 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=56.4
Q ss_pred ceeeEEEEeecccccccceeeEEEEec-c-eeeccccCCCC----C--CCCCceEEEeecceE-EecCCccccccceeEE
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLED-H-FLKSFKSVPHS----K--NEDPVRSAIIDSCIR-VTDNGRESIHRKVFFI 82 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g-~-~l~~yk~~p~~----~--~~~Pi~~~vid~~~~-V~d~gr~~~~~~~~yv 82 (741)
||||||..-.+.+|-. |.+.|+...+ | .+.|.--.+.. . -.++.... |+.|++ -.|. -+-=|.
T Consensus 1 k~GYLy~~~k~~~~~~-Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~-l~sc~~r~~~~------~dRRFC 72 (104)
T cd01249 1 KEGYLYMQEKSKFGGS-WTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLT-LKSCSRRKTES------IDKRFC 72 (104)
T ss_pred CCceEEEEcCCCCCCe-EEEEEEEEEcCCcEEEEEecccccccccCcccccceEEe-eeeccccccCC------ccceee
Confidence 6999999998887665 4555555443 2 33221111211 0 02333333 444533 2222 123389
Q ss_pred EEEEeCCCCCceEEEecCCHHHHHHHHHHHH
Q 004624 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (741)
Q Consensus 83 f~i~~~~~~~~~~~~~a~~~eea~~W~~a~~ 113 (741)
|.|-....+ ..++|=|.|..+-..||+|+.
T Consensus 73 Fei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 73 FDVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EeeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 999887544 679999999999999999984
No 88
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.45 E-value=0.12 Score=49.40 Aligned_cols=96 Identities=23% Similarity=0.335 Sum_probs=61.5
Q ss_pred ceeeEEEEeecccc-----cccceeeEEEEecceeeccccCCCCCCCCCceEEEeecce----EEecCCccc--------
Q 004624 12 MEGWLHLIRSNRIG-----LQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI----RVTDNGRES-------- 74 (741)
Q Consensus 12 ~eGwl~~~g~~~~g-----~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~----~V~d~gr~~-------- 74 (741)
+.|+|..+..++.. +.-.+.||++|=..+|=|=|+|..+ +=.|+|-|. .|++..-..
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~------~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~ 78 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS------TFVVFDYAPRSFLRVEKIEPDNQKIPLGSN 78 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC------eEEEEeeccccceEEeeccccccccccccc
Confidence 56788777665432 1123578999999999888877643 223333332 244321111
Q ss_pred -cccceeEEEEE-EeCCCCCceEEEecCCHHHHHHHHHHHH
Q 004624 75 -IHRKVFFIFTL-YNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (741)
Q Consensus 75 -~~~~~~yvf~i-~~~~~~~~~~~~~a~~~eea~~W~~a~~ 113 (741)
....-+|..++ -|...+...+.|.|.|.+|.++||+||.
T Consensus 79 ~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 79 LVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 12344555554 4555677889999999999999999985
No 89
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=95.45 E-value=0.0077 Score=72.39 Aligned_cols=92 Identities=23% Similarity=0.358 Sum_probs=66.7
Q ss_pred ceeeEEEEeecccccccceeeEEEEec--ceeeccccCCCCCCCCCceEEEeecc--eEEecCCccccccceeEEEEEEe
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSC--IRVTDNGRESIHRKVFFIFTLYN 87 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g--~~l~~yk~~p~~~~~~Pi~~~vid~~--~~V~d~gr~~~~~~~~yvf~i~~ 87 (741)
+||.|||+|.-=-+ |..|||||.. ..|+||+..- +.+|-| +||=- --|+..|-+++-.+.+|-++
T Consensus 1636 ~eG~LyKrGA~lK~---Wk~RwFVLd~~khqlrYYd~~e---dt~pkG--~IdLaevesv~~~~~k~vdekgffdlk--- 1704 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKLKL---WKPRWFVLDPDKHQLRYYDDFE---DTKPKG--CIDLAEVESVALIGPKTVDEKGFFDLK--- 1704 (1732)
T ss_pred cccchhhcchhhcc---cccceeEecCCccceeeecccc---cccccc--hhhhhhhhhhcccCccccCccceeeee---
Confidence 89999999985333 5699999975 6899999433 255543 33321 12344566777777776654
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 88 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
-..+.|.|.|.|+-+|-+|++.++..+
T Consensus 1705 --tt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1705 --TTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred --hhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 456778899999999999999999874
No 90
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=95.40 E-value=0.98 Score=43.91 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=73.4
Q ss_pred EEEEecCCHHHHHHHHhcCCC------CeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEE--E-EcCCCeE
Q 004624 208 AVGVVDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYW--R-REDDGTY 278 (741)
Q Consensus 208 a~gvVdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~w--r-r~~DGsy 278 (741)
-..+|++||+.||++|.|... .....++++. +++....-.+.... .. .+ ...| + ..+...+
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~-----~~--g~--~~~w~s~~~~~~~~~ 74 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEE-DGDTVRFRLTMHPD-----AN--GT--VWSWVSERTLDPVNR 74 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEe-cCCeEEEEEEEEec-----cC--CE--EEEEEEEEEecCCCc
Confidence 456899999999999999643 3444777775 45444443332221 11 12 2223 2 2233344
Q ss_pred EEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 004624 279 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 279 VI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
.|.++ ..+. +|- ....+.|.++|++++ |+|+|......++-.|.........+-..+-..+++||...+
T Consensus 75 ~i~~~--~~~~-~p~------~~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE 143 (146)
T cd08860 75 TVRAR--RVET-GPF------AYMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIE 143 (146)
T ss_pred EEEEE--EecC-CCc------ceeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhh
Confidence 45554 2222 221 234578999999664 999999999977533421111222222224456778888876
Q ss_pred h
Q 004624 359 A 359 (741)
Q Consensus 359 ~ 359 (741)
+
T Consensus 144 ~ 144 (146)
T cd08860 144 A 144 (146)
T ss_pred h
Confidence 5
No 91
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.97 E-value=1.1 Score=41.42 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=70.1
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCC-eeE--EEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEE
Q 004624 206 IMAVGVVDGTSEAIFQTLMSLGAS-RSV--GCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILY 282 (741)
Q Consensus 206 ~Ka~gvVdaspe~Vf~~L~d~d~~-r~e--~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~ 282 (741)
+..+..|++|+++||+++.|.+.. .+. +.-++.+++. .. .+.+. .|+ ...++|..-.. ....+.. |..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~-~~-~~~~~---~~~-g~~~~~~~~v~-~~~~~~~--i~~ 72 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT-RS-HWKAK---GPA-GLSVEWDAEIT-EQVPNER--IAW 72 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC-ce-EEEEe---cCC-CCcEEEEEEEe-ccCCCCE--EEE
Confidence 356788999999999999996531 111 2223333432 11 12222 222 34566654222 2222322 333
Q ss_pred EccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccc-cccchhhHHHH-HHHHHHHHHHHHH
Q 004624 283 HSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIR-MLGRVAALRELFR 358 (741)
Q Consensus 283 ~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~-~~~~~~~~~~~-mL~~Va~LRe~~~ 358 (741)
.....+. . ..+-|.++|.++ ++|.|||.++.++.+.++.. ...+...+..+ +-..+.+||++++
T Consensus 73 ~~~~~~~--~---------~~~~~~f~~~~~-~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 73 RSVEGAD--P---------NAGSVRFRPAPG-RGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred EECCCCC--C---------cceEEEEEECCC-CCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 3333221 1 235677899875 37999999999999877652 21122222232 3345556766654
No 92
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=94.87 E-value=1.1 Score=41.05 Aligned_cols=53 Identities=17% Similarity=0.026 Sum_probs=35.0
Q ss_pred eceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHHHHHHHHHHHH
Q 004624 302 KSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 357 (741)
Q Consensus 302 ~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~ 357 (741)
..+-|.++|++++ +|+|+|..+.+++|.++... ....+--.+-..+++|++++
T Consensus 87 ~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 87 YVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDEL--ARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred ceEEEEEEECCCC-ccEEEEEEEEecCCCcchHH--HHHHHHHHHHHHHHHHHHhh
Confidence 3468999999764 79999999999998755421 12222222335566777765
No 93
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.86 E-value=0.066 Score=49.98 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=69.6
Q ss_pred eeeEEEE-eecccccccceeeEEEEecceeeccccCCCCCC--CCCceEEE-eecceEEecCC--ccccccceeEEEEEE
Q 004624 13 EGWLHLI-RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAI-IDSCIRVTDNG--RESIHRKVFFIFTLY 86 (741)
Q Consensus 13 eGwl~~~-g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~--~~Pi~~~v-id~~~~V~d~g--r~~~~~~~~yvf~i~ 86 (741)
=|||--. ..+..+.+-++.||++|+|+-|.-|+..|.+.. ..|..+.- +|--+||--.| +.. +.+.-|.|.|=
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~-~~~~~~~F~ir 80 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL-NDQRDNCFLIR 80 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc-CCCCceEEEEE
Confidence 3888765 223456677899999999999999999998632 46666654 44445643322 222 23455788875
Q ss_pred eCCCCCceEEEecCCHHHHHHHHHHHHH
Q 004624 87 NTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 87 ~~~~~~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
-..- =..-.|..++.+|.+.|.+||++
T Consensus 81 tg~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 81 TGTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred cCCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 5422 26677899999999999999975
No 94
>PRK10724 hypothetical protein; Provisional
Probab=94.45 E-value=1.4 Score=43.59 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=69.9
Q ss_pred cEEEEEEEecCCHHHHHHHHhcCCC------CeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCe
Q 004624 204 PAIMAVGVVDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 277 (741)
Q Consensus 204 ~~~Ka~gvVdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGs 277 (741)
+.++.+.+|++|++++|++|.|.+. ...+++++++-++.. +...+.. + .+ + ..-|..-.++. .++
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~-~a~l~v~--~-~g-~-~~~f~srv~~~--~~~- 85 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQM-TAAVDVS--K-AG-I-SKTFTTRNQLT--SNQ- 85 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEE-EEEEEEe--e-CC-c-cEEEEEEEEec--CCC-
Confidence 4678889999999999999999653 345588998865542 2222221 1 11 1 33444433332 233
Q ss_pred EEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCcccc
Q 004624 278 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 333 (741)
Q Consensus 278 yVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~ 333 (741)
-|....++.| .+ .+.|.|.++|++++ +|+|++.++.+.+-.+++
T Consensus 86 -~I~~~~~~Gp--------F~--~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~ 129 (158)
T PRK10724 86 -SILMQLVDGP--------FK--KLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIE 129 (158)
T ss_pred -EEEEEecCCC--------hh--hccceEEEEECCCC-CEEEEEEEEEEEchHHHH
Confidence 2444544322 22 35789999999754 699999999998887765
No 95
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=94.14 E-value=0.23 Score=46.10 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCcceeeEEEEeecccccccceeeEEEEecc-eeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEe
Q 004624 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH-FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (741)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~-~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~ 87 (741)
.+-++|.|.+.+ |+ |.++|.|+|... .|.|+. |.. .+=-|.+.+..+++|+-. +.+ .|.|.-
T Consensus 12 ~Il~~g~v~K~k----gl-~~kkR~liLTd~PrL~Yvd--p~~--~~~KGeI~~~~~l~v~~k-----~~~---~F~I~t 74 (104)
T PF14593_consen 12 LILKQGYVKKRK----GL-FAKKRQLILTDGPRLFYVD--PKK--MVLKGEIPWSKELSVEVK-----SFK---TFFIHT 74 (104)
T ss_dssp -EEEEEEEEEEE----TT-EEEEEEEEEETTTEEEEEE--TTT--TEEEEEE--STT-EEEEC-----SSS---EEEEEE
T ss_pred eEEEEEEEEEee----ce-EEEEEEEEEccCCEEEEEE--CCC--CeECcEEecCCceEEEEc-----cCC---EEEEEC
Confidence 445899999963 22 379999999998 888887 432 232366668888888853 222 355555
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 88 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
+ +|+|-|-. ....|..|.+|++++..+
T Consensus 75 p---~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P---KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T---TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred C---CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 4 78888876 556699999999998653
No 96
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.49 E-value=0.64 Score=42.61 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=59.0
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
+||=+...+. .+.||+.|=.+.|=+=|+.+. .==.|+-|.=.+++|.++ ..| +...|.|-.....
T Consensus 6 leg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~----~~~-d~~~F~v~~~~~p 70 (97)
T cd01222 6 LEGRFREHGG-------GKPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEH----LPG-EPLCFRVIPFDDP 70 (97)
T ss_pred eeceEEeecC-------CCceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecC----CCC-CCcEEEEEecCCC
Confidence 5777764443 235776665555555454432 333455543344456653 223 3688999666444
Q ss_pred CceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
.+++++-|.|+|+-..||++|+.|+.
T Consensus 71 ~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 71 KGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred ceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999975
No 97
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.34 E-value=1.9 Score=41.13 Aligned_cols=138 Identities=11% Similarity=0.045 Sum_probs=68.6
Q ss_pred EEEEEecCCHHHHHHHHhcCCCC---eeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEE-EEEEEc-CCCeEEEE
Q 004624 207 MAVGVVDGTSEAIFQTLMSLGAS---RSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRRE-DDGTYVIL 281 (741)
Q Consensus 207 Ka~gvVdaspe~Vf~~L~d~d~~---r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~l-R~wrr~-~DGsyVI~ 281 (741)
+.+..|++||+.|+++|.|.+.- .-.++.++.+++++-..-.+... ++++ ..|-.- +..... ....+.+.
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCcEEEEE
Confidence 34667999999999999986431 11155566666554433333221 1121 122111 111111 11112211
Q ss_pred EEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHHH-HHHHHHHHHH
Q 004624 282 YHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLG-RVAALRELFR 358 (741)
Q Consensus 282 ~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL~-~Va~LRe~~~ 358 (741)
..... ....|.+++.+ -|.+.| .++ .|+|+|-.+++..|.++.+.........-++++ .+.+|++.++
T Consensus 77 ~~g~~----~~~~g~~~~~~---~~~l~~-~~~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 77 ATGKD----ARGQGTAEATV---TLRLSP-AGG-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEEec----CCCcceEEEEE---EEEEEe-cCC-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 11100 00112222222 577888 333 799999999999999987554333444444443 3344666543
No 98
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=91.95 E-value=0.0092 Score=62.98 Aligned_cols=151 Identities=10% Similarity=-0.078 Sum_probs=101.3
Q ss_pred cEEEEeeCCeEEEEeccCCCCCCCCCCccEEEEEEEecCCHHHHHHHHhcCCC--Cee---E-EEEEEeecCceEEEEEE
Q 004624 176 WTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA--SRS---V-GCVVEHLDGHTDIIHKQ 249 (741)
Q Consensus 176 Wkl~~~~nGVrVy~~~~~~~~~~~~~~~~~~Ka~gvVdaspe~Vf~~L~d~d~--~r~---e-~~VVE~ID~~tdIvY~~ 249 (741)
|.+.+...-|+++.+..+. ..+...++..+..-........+.-... ... + ...++.+..++++....
T Consensus 27 ~s~~k~~~~v~~~~~a~~~------~~~~i~~v~~~~~lf~~~~~~~i~~~~~i~~~~~g~~v~~~~~~~~~~~~~~~s~ 100 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK------PKGNISRVRRFFCLFVTEDLVFISLLWLIELLQNGPEVYNMLEKIQKNTDIWTSE 100 (241)
T ss_pred HHHHhhcceeEEeccCCcC------cCCcccccceeeccccccchheeecchhhHHHhccchHHHHHHHHHhheeeeeEe
Confidence 6666666667777766543 3344555555544322222222111100 001 1 45567778888888776
Q ss_pred eecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCC-CCeeEEEEEEeeecC
Q 004624 250 LYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHMLAIDWK 328 (741)
Q Consensus 250 ~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~-~~~~~VT~i~qvD~k 328 (741)
+... .-..+++|+|+...+..+...+......++++++.+++...++|+..+++|++..|++. +..+...--.+.|.+
T Consensus 101 ~~~~-~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~~~~~~~~~~~d~r 179 (241)
T KOG3845|consen 101 FDSF-NVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPFILAWLREWFLDLR 179 (241)
T ss_pred cHhh-hhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcchhHHHHHHHHhhcc
Confidence 5543 34568999999999999988777777888999999999999999999999999999954 223333444677888
Q ss_pred Ccccc
Q 004624 329 CWRSY 333 (741)
Q Consensus 329 Gwip~ 333 (741)
|..+.
T Consensus 180 g~~~~ 184 (241)
T KOG3845|consen 180 GLPQE 184 (241)
T ss_pred cCCCc
Confidence 87664
No 99
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=91.52 E-value=0.26 Score=58.37 Aligned_cols=97 Identities=25% Similarity=0.354 Sum_probs=74.7
Q ss_pred ceeeEEEE--eecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCC
Q 004624 12 MEGWLHLI--RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 12 ~eGwl~~~--g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
.||-|+|+ |+-++|...+.||||-|.+.-|.|-| .|. ..|+.++-+..-.-||-.--+++.++ .+|.|.-.-
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-sp~---~q~~~~Ipl~nI~avEklee~sF~~k--nv~qVV~~d 640 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-SPG---KQPIYTIPLSNIRAVEKLEEKSFKMK--NVFQVVHTD 640 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeEEec-CCc---cCcccceeHHHHHHHHHhhhhccCCC--ceEEEEecC
Confidence 78888886 55668866679999999999999999 443 67888888766544774334555443 578876553
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 90 NHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 90 ~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
|++.+-|.+--||..|..||..+..
T Consensus 641 ---rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 641 ---RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred ---cceeEecCCchHHHHHHHHHHHHhc
Confidence 6999999999999999999998744
No 100
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=90.71 E-value=0.6 Score=53.77 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=76.7
Q ss_pred CCCCCcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceE----EEeecceEEecCCccccccceeE
Q 004624 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRS----AIIDSCIRVTDNGRESIHRKVFF 81 (741)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~----~vid~~~~V~d~gr~~~~~~~~y 81 (741)
+.++..|+|+||.++.-|-+. .|=||||+--=|+|+- |... ++|--- -+=+.++-+---||+.+.-..-|
T Consensus 313 s~~~pei~GfL~~K~dgkKsW---Kk~yf~LR~SGLYys~-K~ts--k~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~ 386 (622)
T KOG3751|consen 313 SSSPPEIQGFLYLKEDGKKSW---KKHYFVLRRSGLYYST-KGTS--KEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDY 386 (622)
T ss_pred cCCCccccceeeecccccccc---eeEEEEEecCcceEcc-CCCC--CCchhhHHHHhcccCceEEeecchhccCCCCCc
Confidence 357788999999998866655 4999999999998886 4433 233221 12345555666689999999999
Q ss_pred EEEEEeCC--CCCceEE-EecCCHHHHHHHHHHHHHHH
Q 004624 82 IFTLYNTS--NHNDQLK-LGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 82 vf~i~~~~--~~~~~~~-~~a~~~eea~~W~~a~~~a~ 116 (741)
.|+|--.+ .+.+.+| |.|++...-..|+-||+-++
T Consensus 387 ~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 387 GFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 99995433 2335666 46788889999999999775
No 101
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.65 E-value=1.5 Score=41.62 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=55.7
Q ss_pred ceeeEEEEecceeeccccCCCCC--CCCCceEEEeecceEEecCCcc-c--cccceeEEEEEEeCCCCCceEEEecCCHH
Q 004624 29 SRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRE-S--IHRKVFFIFTLYNTSNHNDQLKLGASSPE 103 (741)
Q Consensus 29 ~~~RyfvL~g~~l~~yk~~p~~~--~~~Pi~~~vid~~~~V~d~gr~-~--~~~~~~yvf~i~~~~~~~~~~~~~a~~~e 103 (741)
.+.||..|=.+.+=.=|++.... ++=-.|..+.=..++|+++... + -.++--|.|.|-.+ ++...++|.|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence 45788777766666666553210 0111222221123356655311 1 12256788998886 45567999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004624 104 EAAKWIHSLQEAALK 118 (741)
Q Consensus 104 ea~~W~~a~~~a~~~ 118 (741)
+-.+||+||+-|+..
T Consensus 99 ~K~kWm~al~~a~sn 113 (116)
T cd01223 99 LRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999764
No 102
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=89.31 E-value=0.92 Score=52.86 Aligned_cols=96 Identities=24% Similarity=0.327 Sum_probs=68.5
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCC-CCCceEEE-eecceEEecCCccccccceeEEEEEEeCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN-EDPVRSAI-IDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~-~~Pi~~~v-id~~~~V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
+||=|+|+-.++-..| .||++|=...+-|-+.+-.-.. +.-.+..+ ++|+...++. ++.-.-.|-+-
T Consensus 274 KEG~l~Kis~k~~~~q---eRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~-----~~~~~~tF~~~--- 342 (623)
T KOG4424|consen 274 KEGQLQKISAKNGTTQ---ERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDD-----NEELPHTFILT--- 342 (623)
T ss_pred hccceeeeeccCCCcc---eeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccc-----cccCCceEEEe---
Confidence 9999999999877777 9999999988877763332111 33333333 7777666543 22122233332
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 90 NHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 90 ~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
-+.+.++|.|.+.+|...|+.++..||++
T Consensus 343 G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 GKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred cccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 27899999999999999999999999994
No 103
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.90 E-value=21 Score=32.45 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=22.6
Q ss_pred ceeEEEEecCCCCeeEEEEEEeeecCCccc
Q 004624 303 SGGYVITPMNHGKKSVVKHMLAIDWKCWRS 332 (741)
Q Consensus 303 ~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip 332 (741)
.+-|.+.|.++ .|.|+|-.+.+++++..
T Consensus 86 ~~~~~~~~~~~--~t~v~~~~~~~~~~~~~ 113 (140)
T cd08865 86 EDTYTFEPVGG--GTRVRYTAELEPGGFAR 113 (140)
T ss_pred EEEEEEEEcCC--ceEEEEEEEEccchhHH
Confidence 45799999865 59999999999977643
No 104
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=87.77 E-value=12 Score=35.81 Aligned_cols=124 Identities=11% Similarity=-0.004 Sum_probs=64.9
Q ss_pred EEEecCCHHHHHHHHhcCCC--Ce-eEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEEcc
Q 004624 209 VGVVDGTSEAIFQTLMSLGA--SR-SVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSV 285 (741)
Q Consensus 209 ~gvVdaspe~Vf~~L~d~d~--~r-~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~~~SV 285 (741)
.-.|++++++|++.|.|.+. .+ --++.+|.++ +.--.-.+..- ++++.+=-..++.....+...+.+....-
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~~~~v~v----G~i~~~~~g~~~~~~~~~~~~~~~~~~g~ 76 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKGKVKVKV----GPIKGTFDGEVRITEIDPPESYTLEFEGR 76 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEEEEEEES----CCCEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEEEEEEEe----ccEEEEEEEEEEEEEcCCCcceEeeeecc
Confidence 45799999999999998542 01 1178888888 43333333221 33444333334444444555554443332
Q ss_pred CCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHH
Q 004624 286 FHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML 347 (741)
Q Consensus 286 ~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL 347 (741)
.. .+-+.+... -.+...+++. |.|+|-..++..|.+..+........+-+|+
T Consensus 77 g~------~~~~~~~~~---~~~~~~~~~~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~ 128 (140)
T PF06240_consen 77 GR------GGGSSASAN---ITLSLEDDGG-TRVTWSADVEVGGPLASLGQRLIESVARRLI 128 (140)
T ss_dssp EC------TCCEEEEEE---EEEEECCCTC-EEEEEEEEEEEECHHHHC-HHHHHHHHHHHH
T ss_pred CC------ccceEEEEE---EEEEcCCCCC-cEEEEEEEEEEccCHHHhhHHHHHHHHHHHH
Confidence 21 122333221 1233334443 9999999999999987654333333433333
No 105
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=87.73 E-value=1.2 Score=51.65 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=33.7
Q ss_pred ceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 78 KVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 78 ~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
+.-|||.+.++ ..+++-|-|.+.+|.+.||++|++++
T Consensus 453 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 453 NAAHVFAVAFK--TGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCCcEEEEEec--CCcEEEEecCCchhHHHHHHHHHHhc
Confidence 45799999998 68899999999999999999999985
No 106
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.37 E-value=4.9 Score=37.93 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=60.2
Q ss_pred eeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC--CceEEEecCCHHHHHHH
Q 004624 31 KRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH--NDQLKLGASSPEEAAKW 108 (741)
Q Consensus 31 ~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~--~~~~~~~a~~~eea~~W 108 (741)
+|.|.-+--+|+.=.++.......| ..+.=+++.+.+.|.+-+-+++..-|.|..+... .+.+.+=|.|+|+-..|
T Consensus 27 R~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W 104 (114)
T cd01232 27 RRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEW 104 (114)
T ss_pred eEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHH
Confidence 6777777777776543332111222 2445566667777766666667788999887654 58999999999999999
Q ss_pred HHHHHHHHH
Q 004624 109 IHSLQEAAL 117 (741)
Q Consensus 109 ~~a~~~a~~ 117 (741)
+..|.++.+
T Consensus 105 ~~~I~~il~ 113 (114)
T cd01232 105 VKKIREILQ 113 (114)
T ss_pred HHHHHHHhh
Confidence 999999865
No 107
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=86.84 E-value=16 Score=32.11 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=25.3
Q ss_pred EeceeEEEEecCCCCeeEEEEEEeeecCCccc
Q 004624 301 LKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 332 (741)
Q Consensus 301 i~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip 332 (741)
...+.|.+.|..+ .+|.|++....+++++.+
T Consensus 85 ~~~~~~~~~~~~~-~~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 85 DGTGEWRLEPEGD-GGTRVTYTVEYDPPGPLL 115 (141)
T ss_pred ceeEEEEEEECCC-CcEEEEEEEEEecCCcch
Confidence 3456899999875 269999999999999874
No 108
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.82 E-value=20 Score=33.83 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=32.1
Q ss_pred ceeEEEEecCCCCeeEEEEEEeeecCCccc-cccccchhhHHHH-HHHHHHHHHHHHH
Q 004624 303 SGGYVITPMNHGKKSVVKHMLAIDWKCWRS-YLQPSSARSITIR-MLGRVAALRELFR 358 (741)
Q Consensus 303 ~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip-~~~~~~~~~~~~~-mL~~Va~LRe~~~ 358 (741)
.+-|.++|.++ +|+|+|....+..+..+ .+..........+ +-..+.+|+++++
T Consensus 94 ~~~~~~~~~~~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 94 DVEFTLEPVGG--GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred eEEEEEEEcCC--ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999954 59999999999876433 2211112222222 3344456776654
No 109
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=83.94 E-value=34 Score=31.17 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=52.6
Q ss_pred EEEEEEecCCHHHHHHHHhcCCC------CeeEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEE
Q 004624 206 IMAVGVVDGTSEAIFQTLMSLGA------SRSVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 279 (741)
Q Consensus 206 ~Ka~gvVdaspe~Vf~~L~d~d~------~r~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyV 279 (741)
+..+..|+++|++||++|.|... .....+++. ++...+.. .+... +. .-+..+-....+++..+
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~--~~~~~~~~-~~~~~---g~----~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLS--GGGPGTER-TVRVA---GR----GTVREEITEYDPEPRRI 73 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEE--ECSTEEEE-EEEEC---SC----SEEEEEEEEEETTTTEE
T ss_pred EEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcc--ccccceeE-EEEec---cc----cceeEEEEEecCCCcEE
Confidence 45677899999999999999643 122244443 13332222 22221 11 22332222222323332
Q ss_pred EEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeec
Q 004624 280 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDW 327 (741)
Q Consensus 280 I~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~ 327 (741)
..+.+ ..++.. .-+.|.+.|.+++ |.|++..+.++
T Consensus 74 -~~~~~-------~~~~~~---~~~~~~~~~~~~g--t~v~~~~~~~~ 108 (139)
T PF10604_consen 74 -TWRFV-------PSGFTN---GTGRWRFEPVGDG--TRVTWTVEFEP 108 (139)
T ss_dssp -EEEEE-------SSSSCE---EEEEEEEEEETTT--EEEEEEEEEEE
T ss_pred -EEEEE-------ecceeE---EEEEEEEEEcCCC--EEEEEEEEEEE
Confidence 22222 122222 2457999999865 99999999998
No 110
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=83.34 E-value=4.8 Score=49.13 Aligned_cols=99 Identities=16% Similarity=0.311 Sum_probs=69.3
Q ss_pred ceeeEEEEeecc-------cccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCcccc-ccceeEEE
Q 004624 12 MEGWLHLIRSNR-------IGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI-HRKVFFIF 83 (741)
Q Consensus 12 ~eGwl~~~g~~~-------~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~-~~~~~yvf 83 (741)
.-|+||..-++. -++.=..++|-||.|-.|.||..... -.|.+.+-|.--+-+.-.=-+++ +-+.+|+|
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S---~tP~~lI~~~Eivclav~~pd~~pn~~~~f~f 570 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKS---TTPNGLININEIVCLAVHPPDTYPNTGFIFIF 570 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCC---CCCCceeeccceEEEeecCCCCCCCcCceeEE
Confidence 349999866553 34445678999999999999995543 45665554433211211112222 34788999
Q ss_pred EEEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 84 ~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
.||-. .++-+.+|+++++++.+|-+|+..+
T Consensus 571 E~~l~--~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 571 EIYLP--GERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred EEeec--ccceEEeecccHHHHHHHHHHHHHh
Confidence 99965 6899999999999999999998764
No 111
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=82.40 E-value=46 Score=31.59 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCeeEEEEEEeeecCCc
Q 004624 304 GGYVITPMNHGKKSVVKHMLAIDWKCW 330 (741)
Q Consensus 304 sGyvI~Pl~~~~~~~VT~i~qvD~kGw 330 (741)
+.|.++|.++ .|.|++-..++.+|-
T Consensus 90 ~~~~~~~~~~--gt~vt~~~~~~~~~~ 114 (146)
T cd07824 90 GRWTLAPDGS--GTVVRYDWEVRTTKP 114 (146)
T ss_pred EEEEEEEcCC--CEEEEEEEEEEcCHH
Confidence 6799999754 599999999999883
No 112
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=78.89 E-value=7.1 Score=36.77 Aligned_cols=79 Identities=19% Similarity=0.388 Sum_probs=58.2
Q ss_pred cccceeeEEEEecceeeccccCCCC-----CCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCCCceEEEecC
Q 004624 26 LQYSRKRYFLLEDHFLKSFKSVPHS-----KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGAS 100 (741)
Q Consensus 26 ~~~~~~RyfvL~g~~l~~yk~~p~~-----~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~~~~~~~~a~ 100 (741)
-|=.+.|||||=.+.|-+....|.. .++-|+.-+.|-. .||. + +..++|.|--. --..+.+-|.
T Consensus 25 ~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~---lEd~--e----~~~~aFeI~G~--li~~i~v~C~ 93 (111)
T cd01225 25 GEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTR---LEDT--E----ALKNAFEISGP--LIERIVVVCN 93 (111)
T ss_pred ccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEec---hHhc--c----CccceEEEecc--CcCcEEEEeC
Confidence 3345799999999999999987743 3467887776532 3331 1 23578888644 4567888899
Q ss_pred CHHHHHHHHHHHHHH
Q 004624 101 SPEEAAKWIHSLQEA 115 (741)
Q Consensus 101 ~~eea~~W~~a~~~a 115 (741)
|.+|...|+.-|+.-
T Consensus 94 ~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 94 NPQDAQEWVELLNAN 108 (111)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999864
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=73.37 E-value=3.1 Score=51.14 Aligned_cols=95 Identities=23% Similarity=0.369 Sum_probs=66.1
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
++|.+|++-. .....|-+|||-+.++.+-|++|--..+ +.-..-++.| -|...-.++ ..-|.|.|.+ +
T Consensus 276 ~~~~l~~k~~--~~~~tw~r~~f~~q~~~l~~~~r~~~~~---~~~~~dL~~c-svk~~~~~~---drr~CF~iiS---~ 343 (785)
T KOG0521|consen 276 MEGYLRKKAS--NASKTWKRRWFSIQDGQLGYQHRGADAE---NVLIEDLRTC-SVKPDAEQR---DRRFCFEIIS---P 343 (785)
T ss_pred hhhhhhhhcc--cchhhHHhhhhhhhcccccccccccccc---ccccccchhc-cccCCcccc---cceeeEEEec---C
Confidence 5555555433 3677788999999999999999665432 1111114444 232211111 2449999998 8
Q ss_pred CceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
++.+.+=|+|..+-..||.+++..+.+
T Consensus 344 tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 344 TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999874
No 114
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=68.23 E-value=91 Score=30.93 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=62.5
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCeeE----EEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCeEEEE
Q 004624 206 IMAVGVVDGTSEAIFQTLMSLGASRSV----GCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVIL 281 (741)
Q Consensus 206 ~Ka~gvVdaspe~Vf~~L~d~d~~r~e----~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGsyVI~ 281 (741)
|.++-.|.+||++|++.|.|.+. +.. ++-+++.++.. -...++.- ++++ ..|-.- ....
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~-~a~ciPG~qs~e~~g~e~-~~~v~l~i----g~l~-~~~~g~----------~~~~ 65 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQ-VAACIPGVQSVETNGDEY-TAKVKLKI----GPLK-GTFSGR----------VRFV 65 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHH-HHhhcCCcceeeecCCeE-EEEEEEee----ccee-EEEEEE----------EEEc
Confidence 34556799999999999998542 111 77788877633 33333331 2344 222111 1111
Q ss_pred EEccCCCCCCCCCCeEeEEE--------eceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHH
Q 004624 282 YHSVFHKKCPRQKGSVRACL--------KSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML 347 (741)
Q Consensus 282 ~~SV~Hp~~Pp~kG~VRaei--------~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL 347 (741)
. -.-||.+=.|+|.- ......+.|.+. .|+|+|..+.|.+|-+-.+-+..-...+-+|+
T Consensus 66 ----~-v~~~~~~~~i~g~G~~~~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli 132 (146)
T COG3427 66 ----N-VDEPPRSITINGSGGGAAGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGSRLIDSVARKLI 132 (146)
T ss_pred ----c-ccCCCcEEEEEeecccccceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhHHHHHHHHHHHH
Confidence 0 01233333344433 122344555454 49999999999999876543332333333333
No 115
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=67.51 E-value=8.4 Score=47.16 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=67.1
Q ss_pred ceeeEEEEeecc-c-ccccceeeEEEEecceeeccccCCCCC-C-CCCceEEEeecceEEecCCccccccceeEEEEEEe
Q 004624 12 MEGWLHLIRSNR-I-GLQYSRKRYFLLEDHFLKSFKSVPHSK-N-EDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (741)
Q Consensus 12 ~eGwl~~~g~~~-~-g~~~~~~RyfvL~g~~l~~yk~~p~~~-~-~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~ 87 (741)
++|-|-.+...+ + .-.+++.|||||.|..|+-||.....+ + +=||.+.++==- | +++..-...|-|+.|.
T Consensus 1032 k~G~lKirEe~srll~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~G--v----kkklKpPt~wg~T~i~ 1105 (1186)
T KOG1117|consen 1032 KEGILKIREEPSRLLSGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLG--V----KKKLKPPTSWGFTAIS 1105 (1186)
T ss_pred ccceEEeccCccccccCCccceEEEEecCcEEEEeehhhccccccccccccceEEec--c----ccccCCCCccceeeee
Confidence 566554443321 2 334678999999999999999766542 2 678877663111 1 3444447899999994
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 88 TSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 88 ~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
-+ ++.-+.|.+.-+.-.|+-.+--|
T Consensus 1106 ek---hh~~l~cd~s~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1106 EK---HHWYLCCDSSSEQTEWFTSIFKA 1130 (1186)
T ss_pred ec---ceEEEecCCccccchhhhhhhhh
Confidence 32 38899999999999999988777
No 116
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=65.31 E-value=14 Score=43.63 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=71.8
Q ss_pred CCCCcceeeEEEEeecccccccceeeEEEE--ecceeec--cccCCCCCCCCCceEEEeecceEEecCCccccccceeEE
Q 004624 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLL--EDHFLKS--FKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFI 82 (741)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~RyfvL--~g~~l~~--yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yv 82 (741)
.++..+||+||.-..++||.+ |-|-|-+- +-+.+.| +..++..+ .-|.-+.++-.|.|=. -+++ ..=|.
T Consensus 262 p~p~t~eGYlY~QEK~~~g~s-WvKyYC~Y~retk~~TMvp~~qk~g~k-~g~~~~~~lKsC~RRk---tdSI--dKRFC 334 (812)
T KOG1451|consen 262 PTPSTKEGYLYMQEKSKIGKS-WVKYYCVYSRETKIFTMVPANQKTGTK-MGQTATFKLKSCSRRK---TDSI--DKRFC 334 (812)
T ss_pred CCCcccceeeeehhhhhccch-hhhheeEeecccceEEEeecccCCCCc-CCCcceEEehhhccCc---cccc--cccee
Confidence 356679999999999999997 45555553 3444544 23333332 5688888999997722 1122 33488
Q ss_pred EEEEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 83 f~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
|.|.-- +....++|-|-|.++-.-||+|..-|
T Consensus 335 FDve~~-erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 335 FDVEVE-ERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeec-ccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 887654 67889999999999999999998776
No 117
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=63.77 E-value=12 Score=41.61 Aligned_cols=107 Identities=19% Similarity=0.303 Sum_probs=71.4
Q ss_pred CCCCCcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCC-CC-CCceEE-EeecceE-EecCCccccccceeE
Q 004624 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-NE-DPVRSA-IIDSCIR-VTDNGRESIHRKVFF 81 (741)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~-~~-~Pi~~~-vid~~~~-V~d~gr~~~~~~~~y 81 (741)
-..++.|-||+--.--+++..|-.+.||+.|+|..+.-|..-|..- +- .-.++. +-+--++ |.| -++. .+..|
T Consensus 277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd--sd~~-D~R~~ 353 (505)
T KOG3549|consen 277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD--SDTV-DSRQH 353 (505)
T ss_pred ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc--cccc-ccccc
Confidence 3456679999999989999999999999999999999999777431 10 000000 0011111 111 1111 13458
Q ss_pred EEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
.|.|-... .....|..+...|.++|-++|+.|.-
T Consensus 354 CF~~qs~~--ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 354 CFLLQSSG--GEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred eEEEEcCC--CCceEEEEehhhHHHHHHHHHhhHHh
Confidence 89888764 44456778999999999999999964
No 118
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=63.03 E-value=2 Score=52.11 Aligned_cols=92 Identities=21% Similarity=0.303 Sum_probs=73.2
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCC-ccccccceeEEEEEEeCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG-RESIHRKVFFIFTLYNTSN 90 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~g-r~~~~~~~~yvf~i~~~~~ 90 (741)
-.|.|.++=.|+=|+| |=|.|-..-.|++||... |..|+-++.|=|+ .|.--| -+.+ +.=|||++-++
T Consensus 926 Lsg~Llrkfknssgwq---kLwvvft~fcl~fyKS~q---D~~~laslPlLgy-svs~P~~~d~i--~K~~vfkl~fk-- 994 (1036)
T KOG3531|consen 926 LSGYLLRKFKNSSGWQ---KLWVVFTNFCLFFYKSHQ---DSEPLASLPLLGY-SVSIPAEPDPI--QKDYVFKLKFK-- 994 (1036)
T ss_pred hhHHHHHHhhccccce---eeeeeecceeeEeecccc---ccccccccccccc-ccCCCCCCCCc--chhheeeeehh--
Confidence 6788888888888999 999999999999999666 4788888887776 444221 2222 23489998765
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHH
Q 004624 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 91 ~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
++.|-++|++.-.-++||+.|+.|
T Consensus 995 -~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 995 -SHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred -hhHHHHhhhhhhhhhhHHHHhhcC
Confidence 688999999999999999999988
No 119
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.62 E-value=77 Score=30.89 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=60.7
Q ss_pred eeEEEEecceeeccccC-CCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCCCceEEEecCCHHHHHHHH
Q 004624 31 KRYFLLEDHFLKSFKSV-PHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWI 109 (741)
Q Consensus 31 ~RyfvL~g~~l~~yk~~-p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~ 109 (741)
++-|+-+.-+|++=.++ +.+....| +.+.=+++.+.+.|..-+-+++..-|.|..+. ....|.+=|.|+|.-..|+
T Consensus 32 RhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~-~~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 32 RHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNA-REEVYILQAPTPEIKAAWV 108 (133)
T ss_pred eEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCC-CCcEEEEEcCCHHHHHHHH
Confidence 55566667777765442 11111233 35666777788777665555567889998875 5689999999999999999
Q ss_pred HHHHHHHHhC
Q 004624 110 HSLQEAALKG 119 (741)
Q Consensus 110 ~a~~~a~~~~ 119 (741)
+.|...++++
T Consensus 109 ~~I~~iL~~Q 118 (133)
T cd01227 109 NEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 120
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=58.05 E-value=1.5e+02 Score=26.91 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.5
Q ss_pred EEEEEEecCCHHHHHHHHhcCCC
Q 004624 206 IMAVGVVDGTSEAIFQTLMSLGA 228 (741)
Q Consensus 206 ~Ka~gvVdaspe~Vf~~L~d~d~ 228 (741)
+..+.+|++|+++||+.|.|...
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~ 24 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS 24 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc
Confidence 45678899999999999999653
No 121
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=55.52 E-value=15 Score=34.58 Aligned_cols=98 Identities=16% Similarity=0.252 Sum_probs=61.6
Q ss_pred CCcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeC
Q 004624 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (741)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~ 88 (741)
.+.++|+++++|-- =.+-|.+|||=|=.|.|..|-... ....-.++.|--.-|+-. -..+.|..--+++|
T Consensus 2 DcIvhGyi~KLGGP--Fls~WQ~Ry~~LfPNRLE~~~~~~----~~~~eLi~M~~i~~V~~e-~~~iK~~~CI~ik~--- 71 (116)
T cd01240 2 DCIVHGYIKKLGGP--FLSQWQTRYFKLYPNRLELYGESE----ANKPELITMDQIEDVSVE-FQQIKEENCILLKI--- 71 (116)
T ss_pred ceEEeeehhhhCCH--HHHHHHHHHheeCcceeeeccccc----ccCCcEEEeehhhhcchh-heeeccCceEEEEE---
Confidence 34589999998763 234478999999999999974222 112222333322112210 11223444334444
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 89 SNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 89 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
.+..++-|-+.+.-+-..|++.|..|-.
T Consensus 72 -k~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 72 -RDEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred -cCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 3478899999999999999999998854
No 122
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=52.67 E-value=5.8 Score=46.49 Aligned_cols=101 Identities=22% Similarity=0.284 Sum_probs=63.2
Q ss_pred cceeeEE-EEeecccccccceeeEEEEecceeeccccCCC-CCCCCCceEEEeecceEEe-cCCccccccceeEEEEEEe
Q 004624 11 RMEGWLH-LIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH-SKNEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTLYN 87 (741)
Q Consensus 11 ~~eGwl~-~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~-~~~~~Pi~~~vid~~~~V~-d~gr~~~~~~~~yvf~i~~ 87 (741)
..||=|- |+|+=++=+. |+.|||-|.|-.|-|-|-+-. |-+.-||..--|-.---|. .+|+++ -.=.|.|+-
T Consensus 736 ~iEGQLKEKKGrWRf~kR-W~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rs----lpKAFEIFT 810 (851)
T KOG3723|consen 736 LIEGQLKEKKGRWRFIKR-WKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRS----LPKAFEIFT 810 (851)
T ss_pred hhcchhhhhccchhhhhh-hccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcc----cchhhheee
Confidence 4555542 4455444444 789999999999999664432 2223344333332221022 234444 445677765
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHHHHHhC
Q 004624 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALKG 119 (741)
Q Consensus 88 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 119 (741)
. |++ +.|-|.+..-|+.|.+.|.=|+.++
T Consensus 811 A-D~T--~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 811 A-DKT--YILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred c-Cce--EEeecccccCHHHHHHHHHHHHHHH
Confidence 4 344 8999999999999999999887754
No 123
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=51.32 E-value=4.3 Score=47.98 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=34.6
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVP 48 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p 48 (741)
+.+||+++.+-|..+.++|++=||||++..|.-|.-+.
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~ 600 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR 600 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh
Confidence 47899999999999999999999999999999998443
No 124
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=51.22 E-value=15 Score=44.12 Aligned_cols=92 Identities=17% Similarity=0.395 Sum_probs=62.8
Q ss_pred ceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~ 91 (741)
+.|++...+ .++|+ +.+||||++.-...||+ +|.+..+.|-..+=+-.-|.. ..+.--|.|-+- ..
T Consensus 251 kSgy~~~~~-s~~k~--lkrr~~v~k~gqi~~y~-~~~~~~~~p~s~~d~~s~~~~-------~~~~~s~~fqli---~~ 316 (936)
T KOG0248|consen 251 KSGYWTQLT-SRIKS--LKRRYVVFKNGQISFYR-KHNNRDEEPASKIDIRSVTKL-------EQQGAAYAFQLI---TS 316 (936)
T ss_pred cccchhcch-HHHHH--HHhHheeeccceEEEEE-cCCCccccccCccccccccee-------eccchhHHhhhh---hh
Confidence 678888877 44554 47999999999999999 444434555544422222222 223333444432 35
Q ss_pred CceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 92 NDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 92 ~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
.+++.+-+++.--.+.|+.-|+.++.
T Consensus 317 t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 68999999999999999999999876
No 125
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=49.45 E-value=7.9 Score=45.74 Aligned_cols=95 Identities=18% Similarity=0.321 Sum_probs=65.4
Q ss_pred ceeeEEEEeecccccccceeeEEEEeccee-----eccccCCCCCCCCCceEEEeecceE-EecCCccccccceeEEEEE
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFL-----KSFKSVPHSKNEDPVRSAIIDSCIR-VTDNGRESIHRKVFFIFTL 85 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l-----~~yk~~p~~~~~~Pi~~~vid~~~~-V~d~gr~~~~~~~~yvf~i 85 (741)
+.|++|-+|+|-- .-|.||||||----- -.|..|. .+|-.-+-+||++. -+|-.- ...|+.. +
T Consensus 466 hsgylyaig~nvw--krwkkrffvlvqvsqytfamcsyrekk----aepqel~qldgytvdytdp~p-glqgg~~----f 534 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVW--KRWKKRFFVLVQVSQYTFAMCSYREKK----AEPQELIQLDGYTVDYTDPSP-GLQGGKH----F 534 (1218)
T ss_pred cceeehhhhhHHH--HHhHhhEEEEEEhhhhhhHhhhhhhcc----cChHHHhhccCeeeccCCCCC-ccccchH----H
Confidence 7899999998733 336899999964321 1244333 46667777999954 223211 1222321 3
Q ss_pred EeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 86 ~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
+|.-...+.++||..+.+|---|.+|+-.|--
T Consensus 535 fnavkegdtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 535 FNAVKEGDTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred HHHhccCceEEeccCchhhhhHHHHHHHHhhC
Confidence 56777899999999999999999999999954
No 126
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.15 E-value=30 Score=32.07 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=28.4
Q ss_pred eeEEEEEEeCCC-CCceEEEecCCHHHHHHHHHHHHH
Q 004624 79 VFFIFTLYNTSN-HNDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 79 ~~yvf~i~~~~~-~~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
.-..|+|+...+ ..+.+-|-|.|.++|..|+..|..
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 346788866542 367799999999999999999863
No 127
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.08 E-value=45 Score=30.41 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=48.6
Q ss_pred ceeeEEEEeecccccccceeeEEEEe-cceeeccccCCCCCCCCCceEEEeec-ceEEecCCccccccceeEEEEEEeCC
Q 004624 12 MEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSKNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLYNTS 89 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~RyfvL~-g~~l~~yk~~p~~~~~~Pi~~~vid~-~~~V~d~gr~~~~~~~~yvf~i~~~~ 89 (741)
+.|-+.++ -|+ |.++|=|+|. +-.|.|+. |.. +.=-|.+.+.. +++|+-. +++. |.| .
T Consensus 3 ~~g~v~Kr----~gl-f~kkR~LiLTd~PrL~yvd--p~~--~~~KgeIp~s~~~l~v~~~-----~~~~---F~I---~ 62 (89)
T cd01262 3 KIGAVKKR----KGL-FAKKRQLILTNGPRLIYVD--PVK--KVVKGEIPWSDVELRVEVK-----NSSH---FFV---H 62 (89)
T ss_pred eeeeeeeh----hcc-ccceeeEEEecCceEEEEc--CCc--CeEEeEecccccceEEEEe-----cCcc---EEE---E
Confidence 45555552 345 6789988886 44566765 432 22233444555 6666631 1122 333 2
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 90 ~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
-.+|.|.|- .-...|.+|.+|++++
T Consensus 63 Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 63 TPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred CCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 356677763 3447899999999987
No 128
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=47.47 E-value=2.2e+02 Score=25.86 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEEEecCCHHHHHHHHhcCCC
Q 004624 206 IMAVGVVDGTSEAIFQTLMSLGA 228 (741)
Q Consensus 206 ~Ka~gvVdaspe~Vf~~L~d~d~ 228 (741)
+..+..|+||+++||+.+.|.+.
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~ 25 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN 25 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh
Confidence 56678899999999999999653
No 129
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=46.98 E-value=1.2e+02 Score=30.08 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=62.0
Q ss_pred cEEEEEEEecCCHHHHHHHHhcCCCC------eeEEEEEEeecCce-----EEEEEEeecCCCCCCCCCCeEEEEEEEEE
Q 004624 204 PAIMAVGVVDGTSEAIFQTLMSLGAS------RSVGCVVEHLDGHT-----DIIHKQLYSDWLPWGMKRRDLLLRRYWRR 272 (741)
Q Consensus 204 ~~~Ka~gvVdaspe~Vf~~L~d~d~~------r~e~~VVE~ID~~t-----dIvY~~~~~~~~P~~vspRDFV~lR~wrr 272 (741)
+.+.....|..+|+++|+++.|.+.. +...+|+++ +++. +|.|.-+ |.--.-|-..
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~~k~i-----------~e~F~Trv~~- 68 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLER-NERELIAELDVGFKGI-----------RETFTTRVTL- 68 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEecc-CcceeEEEEEEEhhhe-----------eeeeeeeeee-
Confidence 35667788999999999999986531 122566655 3332 3333211 1111111111
Q ss_pred cCCCeEEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCcccc
Q 004624 273 EDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 333 (741)
Q Consensus 273 ~~DGsyVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~ 333 (741)
.++.-+|..+.+.-|= +-+.|+|-+.|+.+ ..|+|...+.-+.+..+-+
T Consensus 69 -~~~~~~I~~~l~~GPF----------k~L~~~W~F~pl~~-~~ckV~f~ldfeF~s~ll~ 117 (146)
T COG2867 69 -KPTARSIDMKLIDGPF----------KYLKGGWQFTPLSE-DACKVEFFLDFEFKSRLLG 117 (146)
T ss_pred -cCchhhhhhhhhcCCh----------hhhcCceEEEECCC-CceEEEEEEEeeehhHHHH
Confidence 1222244444443221 13568999999965 4899999999999887654
No 130
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=46.52 E-value=32 Score=33.31 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=30.1
Q ss_pred cceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 77 RKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 77 ~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
.+..|-|+|-.-+.+...++|=|.|+.+-.+|+++|+++
T Consensus 96 ~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 96 SKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 478999999666555666999999999999999999987
No 131
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=44.33 E-value=20 Score=41.22 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=71.3
Q ss_pred CCCCCcceeeEEEEeecccccccceeeEEEEecc------eeeccccCCCCCC---CCCc-eEEEeecceEEecCCcccc
Q 004624 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSKN---EDPV-RSAIIDSCIRVTDNGRESI 75 (741)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~------~l~~yk~~p~~~~---~~Pi-~~~vid~~~~V~d~gr~~~ 75 (741)
+.+-.++.|.+|.. .+|+|.--++++|.+|..- .|.+|..+..+.. .-=+ |.+-+--|..||.- ++-.
T Consensus 4 ~~~~~~k~g~~~~~-~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~-~~~~ 81 (429)
T KOG4047|consen 4 ICSCLVKDGVPDNH-RNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESG-RRCQ 81 (429)
T ss_pred ccCcccccCccchh-hhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecc-cccc
Confidence 44566789988874 5679988889999999763 2334443333322 2234 34445555557765 4444
Q ss_pred ccceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 76 HRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 76 ~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
-|.-.|+|..-+..+ .|.|.+.-+++.||++|..-+-
T Consensus 82 ~~~~i~~~f~~~a~e-----~~~~~q~l~~~~w~~~i~~~~~ 118 (429)
T KOG4047|consen 82 TGPGITAFFCDRAEE-----LFNMLQDLMQANWINAIEEPAI 118 (429)
T ss_pred cCCCceEEEecchHH-----HHHHHHHHHhhhhhhhhhhccc
Confidence 677778888777655 7889999999999999987643
No 132
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=44.12 E-value=27 Score=42.82 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=35.8
Q ss_pred ceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHHhC
Q 004624 78 KVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALKG 119 (741)
Q Consensus 78 ~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 119 (741)
+..|||.|--+.-...-+.+||.|+|||-.|.+++++++..+
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 467888887766677789999999999999999999998753
No 133
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=36.35 E-value=62 Score=30.30 Aligned_cols=50 Identities=16% Similarity=0.392 Sum_probs=36.5
Q ss_pred CCceEEE-eecceEEe--cCCccccccceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHH
Q 004624 54 DPVRSAI-IDSCIRVT--DNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 54 ~Pi~~~v-id~~~~V~--d~gr~~~~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~ 114 (741)
+|--++. +--|+++| || ...||++++|. -.|.|.|.+.+++..|+..|+.
T Consensus 54 v~C~~I~EvR~tt~LEmPD~-------~nTFvLK~~~~----~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 54 VACSSISEVRECTRLEMPDN-------LYTFVLKVDDN----TDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cchhhhhhhhhcccccccCc-------ccEEEEEecCC----ceEEEEcCCHHHHHHHHHHHhc
Confidence 4444444 55666666 32 44588888774 4799999999999999998864
No 134
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=33.14 E-value=45 Score=30.77 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=50.2
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeec--cccCCCCC-C------CCCceEEEeecceEEecCCccccccceeE
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKS--FKSVPHSK-N------EDPVRSAIIDSCIRVTDNGRESIHRKVFF 81 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~--yk~~p~~~-~------~~Pi~~~vid~~~~V~d~gr~~~~~~~~y 81 (741)
..||.|+++-+ -... .|=|.|=+-+|-| ||+++... . ..|+.-+ .++..
T Consensus 4 v~eg~lvel~~--~~rK---~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl------~~~~~----------- 61 (96)
T cd01228 4 VKDSFLVELVE--GSRK---LRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADL------SFPSE----------- 61 (96)
T ss_pred cccceeeeehh--CCCc---ceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHh------eecch-----------
Confidence 46888888653 2333 6777776666655 44433321 0 1222211 11111
Q ss_pred EEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHH
Q 004624 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (741)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a 115 (741)
.|++.|+ .++.+.+-|.|.+|-..||+++...
T Consensus 62 ~~~~~~~--~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 62 PFRIHNK--NGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhhcccc--CCceEEEEecCHHHHHHHHHHHHHH
Confidence 3777755 4889999999999999999999765
No 135
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.76 E-value=2.2e+02 Score=26.48 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeecccc-CCCC--CCCCCceEEEeecceEEecCCccccccceeEEEEEEe
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~-~p~~--~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~ 87 (741)
.++|=|+-+..+..-.. +|-++|++-..+|.-.-. +... ....|+..+.+. -|.|+| .+-.+|.|.-
T Consensus 3 i~~G~l~e~~~~~~kp~-~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~---ni~D~~------~~kNafki~t 72 (100)
T cd01226 3 ILYGELEEFDVETKKPV-QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVV---NVKDRE------NAKKVLKLLI 72 (100)
T ss_pred EEcCcEEEechhhCCcc-ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEE---ecCCCc------CcCceEEEEe
Confidence 35666666665533332 444578877777754221 1111 012333332221 123432 3556777765
Q ss_pred CCCCCceEEEecCCHHHHHHHHHHHHHHH
Q 004624 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (741)
Q Consensus 88 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 116 (741)
.. +++- +.|+|+++-..||..|++|+
T Consensus 73 ~~-~s~i--~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 73 FP-ESRI--YQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CC-ccEE--EEeCCHHHHHHHHHHHHHHh
Confidence 43 4443 66999999999999999996
No 136
>PF15406 PH_6: Pleckstrin homology domain
Probab=31.64 E-value=1.2e+02 Score=28.86 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=35.8
Q ss_pred CCCCCCCCceEEEe-ecceEEecCCccccccceeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHH
Q 004624 48 PHSKNEDPVRSAII-DSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (741)
Q Consensus 48 p~~~~~~Pi~~~vi-d~~~~V~d~gr~~~~~~~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~ 113 (741)
..|. ..|-|.+-+ |-. -|+..| ..-|.|++ +.++-+|=|.|++|=..|+.+|+
T Consensus 57 ~~dk-a~P~GiinLadas-e~~~~g------~~kF~f~~-----~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 57 AEDK-ASPSGIINLADAS-EPEKDG------SNKFHFKI-----KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred cccc-cCCcceEehhhcc-ccccCC------CceEEEEe-----CCceeeeecCCHHHhccHHHHhh
Confidence 4443 677776665 433 444433 34488887 44566777999999999999986
No 137
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=30.39 E-value=97 Score=36.23 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=54.7
Q ss_pred ceeeEEEEeeccccccc---ceeeEEEEecceeeccccCCCC-CC---CCCceEEEeecceEEecCCccccccceeEEEE
Q 004624 12 MEGWLHLIRSNRIGLQY---SRKRYFLLEDHFLKSFKSVPHS-KN---EDPVRSAIIDSCIRVTDNGRESIHRKVFFIFT 84 (741)
Q Consensus 12 ~eGwl~~~g~~~~g~~~---~~~RyfvL~g~~l~~yk~~p~~-~~---~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~ 84 (741)
..||+-+.|.=.-=..| +..|||||+.+-|.|||.+-.. ++ ..-+.+++|..+ .-+--.|.
T Consensus 20 ~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ah------------EfDe~rfd 87 (611)
T KOG1739|consen 20 SDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAH------------EFDECRFD 87 (611)
T ss_pred cCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccc------------cchhheee
Confidence 67999776663222222 2399999999999999976643 11 112222222222 12222333
Q ss_pred EEeCCCCCceEEEecCCHHHHHHHHHHHHHHHHh
Q 004624 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (741)
Q Consensus 85 i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 118 (741)
|.- ...-..+-|...+.-..|+++|+.-..+
T Consensus 88 Isv---n~nv~~lra~~~~hr~~w~d~L~wmk~e 118 (611)
T KOG1739|consen 88 ISV---NDNVWYLRAQDPDHRQQWIDALEWMKTE 118 (611)
T ss_pred eEe---ccceeeehhcCcHHHHHHHHHHHHHhhc
Confidence 321 2455666788888889999999987553
No 138
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.99 E-value=57 Score=38.66 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=67.7
Q ss_pred ceeeEEEE-------eecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeec----ceEEe--cCCccccccc
Q 004624 12 MEGWLHLI-------RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS----CIRVT--DNGRESIHRK 78 (741)
Q Consensus 12 ~eGwl~~~-------g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~----~~~V~--d~gr~~~~~~ 78 (741)
+.|.|.++ +..-.|+.=|++=|-||+|-.|+.-| + +-+-+..+.++ -+.|- .--+-+...+
T Consensus 508 k~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqk-D-----ey~p~kalse~~lknavsvHHALAt~AtdY~K 581 (774)
T KOG0932|consen 508 KSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQK-D-----EYKPGKALSESDLKNAVSVHHALATPATDYSK 581 (774)
T ss_pred hhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeec-c-----ccCcccchhhhhhhhhhhhhhhhcCCCccccc
Confidence 67777654 33445666677889999999997666 2 22223333222 21111 0013344456
Q ss_pred eeEEEEEEeCCCCCceEEEecCCHHHHHHHHHHHHHHHH--hCCCCCC
Q 004624 79 VFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL--KGGPHQG 124 (741)
Q Consensus 79 ~~yvf~i~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~--~~~~~~~ 124 (741)
..+||++- -.+-|.+-|-|.|+|||..|+..|-.++. .+.+-|.
T Consensus 582 Kp~Vf~lr--tAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfPa 627 (774)
T KOG0932|consen 582 KPHVFKLR--TADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFPA 627 (774)
T ss_pred CCceEEEE--eccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 67888774 45889999999999999999999998765 4444443
No 139
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=26.95 E-value=5.7e+02 Score=24.54 Aligned_cols=112 Identities=13% Similarity=0.000 Sum_probs=62.9
Q ss_pred EEEEEEecCCHHHHHHHHhcCCC---Ce-----eEEEEEEeecCceEEEEEEeecCCCCCCCCCCeEEEEEEEEEcCCCe
Q 004624 206 IMAVGVVDGTSEAIFQTLMSLGA---SR-----SVGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 277 (741)
Q Consensus 206 ~Ka~gvVdaspe~Vf~~L~d~d~---~r-----~e~~VVE~ID~~tdIvY~~~~~~~~P~~vspRDFV~lR~wrr~~DGs 277 (741)
+..+..|+||+++|++++.+.+. .. ..+++++-=++.-.|..+.+.+ .. ..+ .+.-|--.. ++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~~~-D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERIDAV-DEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEEEE-cccc
Confidence 56788899999999999999762 11 1144443212223455555432 11 111 122122222 4445
Q ss_pred EEEEEEccCCCCCCCCCCeEeEEEeceeEEEEecCCCCeeEEEEEEeeecCCc
Q 004624 278 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 330 (741)
Q Consensus 278 yVI~~~SV~Hp~~Pp~kG~VRaei~~sGyvI~Pl~~~~~~~VT~i~qvD~kGw 330 (741)
..+.++-++-+... -.-....+.+-+.|.++ ++|.++|.+..++..-
T Consensus 76 ~~~~y~vveg~~~~-----~~~~~y~~t~~v~~~~~-~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLK-----DGYKSYKVEIKFVPKGD-GGCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccccc-----CceEEEEEEEEEEECCC-CCEEEEEEEEEEECCC
Confidence 66666655432111 01234456777889855 4899999999997653
No 140
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=26.75 E-value=36 Score=42.04 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=26.8
Q ss_pred cceeeEEEEeecccccccceeeEEEEecceeeccccCC
Q 004624 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVP 48 (741)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p 48 (741)
-.+||||+-.. .+.+ +++|||+|.+-+|.||+-..
T Consensus 78 ~~~g~l~k~~n--~~~~-~~~r~f~l~~g~ls~~~~~~ 112 (799)
T KOG1737|consen 78 SLEGILLKWRN--YSKG-PSSRWFVLSGGLLSYYFDNS 112 (799)
T ss_pred cccceeecccc--ccCC-cccceEEecCcceeeeccCC
Confidence 37899999555 5555 35999999999999998444
No 141
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.95 E-value=31 Score=42.23 Aligned_cols=105 Identities=26% Similarity=0.391 Sum_probs=73.6
Q ss_pred CcceeeEEEEeecccccccceeeEEEEecceeeccccCCCCCCCCCceEEEeecce--EEecCCccc-cc-cceeEEEEE
Q 004624 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI--RVTDNGRES-IH-RKVFFIFTL 85 (741)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~RyfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~--~V~d~gr~~-~~-~~~~yvf~i 85 (741)
..|.||+-.++.---+ +-+-.=|-.++-+-..+|.-...+|=+.|+= .||-+- -+-.-|.++ +| ++.--||-|
T Consensus 812 grmnGwlRVyRdd~~~-stwl~~wammdl~~~~fy~~~gadple~p~f--~idlnkeqw~Lrtgqe~~~~v~dimrvfnv 888 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEA-STWLLGWAMMDLEGDDFYDMNGADPLEDPVF--LIDLNKEQWALRTGQESLTHVPDIMRVFNV 888 (1265)
T ss_pred hhcccceeeeccccch-hHHHHHHHHhhhcccchhhccCCccccCceE--EeecchhHHHHHhccccccCCcchhhhhee
Confidence 3599999887765333 3355566677777788888777665466643 344331 111223333 33 566678888
Q ss_pred EeCCCCCceEEEecCCHHHHHHHHHHHHHHHH
Q 004624 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (741)
Q Consensus 86 ~~~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 117 (741)
|--++..+.+.|+|-++..|+.|-..|+.|..
T Consensus 889 liIK~~~r~l~I~ap~~~saerwA~CLq~aqk 920 (1265)
T KOG0976|consen 889 LIIKDLERLLMIAAPSPKSAERWALCLQDAQK 920 (1265)
T ss_pred eeecchhhhheeecCCCccHHHHHHHHHHHHH
Confidence 88899999999999999999999999999955
No 142
>PHA02770 hypothetical protein; Provisional
Probab=24.34 E-value=1.9e+02 Score=24.85 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=34.4
Q ss_pred EEEEecceeeccccCCCCCCCCCceEEEeecceEEecCCccccccceeEEEEEEeCCCCCceEEEe
Q 004624 33 YFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLG 98 (741)
Q Consensus 33 yfvL~g~~l~~yk~~p~~~~~~Pi~~~vid~~~~V~d~gr~~~~~~~~yvf~i~~~~~~~~~~~~~ 98 (741)
-|..+...|+|-|++-. |-|++.|.+ .-|-|.+.++++.+-.+++|
T Consensus 25 ~flvepqilfyakkrnr-----------i~gylei~~---------~hyrfelifskdnsvsitig 70 (81)
T PHA02770 25 SFLVEPQILFYAKKRNR-----------ITGYLEVNG---------RHYRFELIFSKDNSVSITIG 70 (81)
T ss_pred EEEecceeeEeeeccCe-----------EEEEEEEcC---------ceEEEEEEEecCCcEEEEEe
Confidence 47788899998885441 446655553 34999999999999888877
No 143
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=23.32 E-value=1.6e+02 Score=28.50 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.4
Q ss_pred EecCCHHHHHHHHHHHHH
Q 004624 97 LGASSPEEAAKWIHSLQE 114 (741)
Q Consensus 97 ~~a~~~eea~~W~~a~~~ 114 (741)
.|..+...+++||+-|++
T Consensus 94 tg~~~~~sL~~WI~~Lq~ 111 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQE 111 (126)
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 356788999999999987
No 144
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=22.71 E-value=5.7e+02 Score=23.04 Aligned_cols=51 Identities=6% Similarity=-0.040 Sum_probs=30.1
Q ss_pred ceeEEEEecCCCCeeEEEEEEeeecCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 004624 303 SGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 358 (741)
Q Consensus 303 ~sGyvI~Pl~~~~~~~VT~i~qvD~kGwip~~~~~~~~~~~~~mL~~Va~LRe~~~ 358 (741)
..-|.++|.++ +|+|++....-..+- + -..+...+...+-..+..||++++
T Consensus 88 ~~~~~~~~~~~--~T~v~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 88 TVTVTLEETGG--GTRLTLTHSGFPEED-A--EQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred EEEEEEEECCC--CEEEEEEEEccChHh-H--HHHHHhCHhhHHHHHHHHHHHHhh
Confidence 44688999874 599998877665431 1 011223333334455567888764
Done!