Query 004625
Match_columns 741
No_of_seqs 171 out of 288
Neff 5.3
Searched_HMMs 13730
Date Tue Mar 26 18:06:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004625.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1924-1928//hhsearch_scop/004625hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ho8a_ a.118.1.9 (A:) Regulat 70.1 2.5 0.00018 17.8 6.5 156 211-377 75-254 (477)
2 d1uw4b_ a.118.1.14 (B:) Regula 46.3 6.4 0.00047 15.2 6.7 126 206-342 2-129 (248)
3 d1nd7a_ d.148.1.1 (A:) WW doma 39.7 8.1 0.00059 14.6 4.8 39 128-169 4-42 (374)
4 d1c4za_ d.148.1.1 (A:) Ubiquit 26.0 14 0.00099 13.2 4.3 14 107-120 51-64 (350)
5 d2jm6b1 f.1.4.1 (B:147-308) EA 17.3 21 0.0015 12.0 1.1 37 360-396 92-128 (162)
6 d1kl1a_ c.67.1.4 (A:) Serine h 11.3 30 0.0022 11.0 0.5 34 460-493 352-385 (405)
7 d2vgla_ a.118.1.10 (A:) Adapti 10.5 32 0.0023 10.8 15.0 57 223-284 115-173 (584)
8 d1i1ip_ d.92.1.5 (P:) Neurolys 9.6 35 0.0025 10.6 6.1 112 289-405 223-362 (665)
9 d1fkma2 a.69.2.1 (A:443-630) Y 8.8 37 0.0027 10.4 0.6 20 45-64 15-34 (188)
10 d2pk8a1 d.274.1.1 (A:2-95) Hyp 5.8 59 0.0043 9.2 1.2 14 49-62 32-45 (94)
No 1
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=70.12 E-value=2.5 Score=17.81 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---EEEEECHHHHH---HHHHH-HHHHHCCCCCC-HHHHHHHHHHHHHHHC
Q ss_conf 99899999610695789999999722102---20031414689---99999-99862468996-0699999999999970
Q 004625 211 YLGNSLHVLNQMTDTEMISFTLRRLKFSS---LFLAAFPSLLR---KYVKA-ALHFWGTGGGA-LPVVAFLFLRDLCIRL 282 (741)
Q Consensus 211 yl~sll~LL~~ltd~~~l~~vL~~l~~l~---p~l~~f~kl~k---~~LK~-lv~lWst~~~~-vrv~AFl~Lr~l~~~~ 282 (741)
|..+.+++|+.++..+++.++|.-+..++ |+...+-.+.. ..+.. ..++- ..++. +-..+|-.+..++..
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~- 152 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQN- 152 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTST-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHC-
T ss_conf 999999998606717899999999999872373236789887637321367888731-576058999989999999845-
Q ss_pred CCCCHHHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHCC--
Q ss_conf 986056799999-9999852342693522457988897999937994313688999-----99999999998741201--
Q 004625 283 GSDCLDDCFKGI-YKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFV-----FIRQLAMILRDAFNVKT-- 354 (741)
Q Consensus 283 ~~~~le~~LK~~-Y~ayv~n~k~tn~~tl~~InfMkN~~vEL~~ld~~~aYq~AF~-----YIRQLAihLRnai~~k~-- 354 (741)
....++..-... +..|.+. .++....+....--+|+.+|...+ .|...|. +|-.|.-.||+++..+.
T Consensus 153 ~~~~~~~~e~l~~~~~~l~~--l~~~~~~~~~~i~v~~lq~llr~~---~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~ 227 (477)
T d1ho8a_ 153 GLHNVKLVEKLLKNNNLINI--LQNIEQMDTCYVCIRLLQELAVIP---EYRDVIWLHEKKFMPTLFKILQRATDSQLAT 227 (477)
T ss_dssp TTCCHHHHHHHHHCHHHHHH--HHCTTCHHHHHHHHHHHHHHHTSH---HHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCCHHHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHCCC---CHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 65354347888775699998--512132324899999999882675---0789998813221788999999874256542
Q ss_pred --------CHHHCEECCHHHHHHHHHHHHHH
Q ss_conf --------01050031104687799999988
Q 004625 355 --------KEAFRKVYEWKFINCLELWTGAV 377 (741)
Q Consensus 355 --------Kes~k~VYNWQfi~sL~lWs~VL 377 (741)
+-++|. ||=-++=+|.--.
T Consensus 228 ~~~~~~~~~~~~Ql----~Y~~ll~lWlLSF 254 (477)
T d1ho8a_ 228 RIVATNSNHLGIQL----QYHSLLLIWLLTF 254 (477)
T ss_dssp --------CCHHHH----HHHHHHHHHHHTT
T ss_pred HHHCCCCCCCCHHH----HHHHHHHHHHHHC
T ss_conf 00003688853799----9999999999975
No 2
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.33 E-value=6.4 Score=15.23 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHHHCC
Q ss_conf 989999989999961069578999999972210220031414689999999986246899606999999--999999709
Q 004625 206 HLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLF--LRDLCIRLG 283 (741)
Q Consensus 206 ~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~--Lr~l~~~~~ 283 (741)
|.+..|+.-+ +++.++... +..+++.+..+ +| ..+.....+++.++..|.+..+-+...|=++ |.+.-..++
T Consensus 2 ~p~~~flr~l--i~n~Ls~~n-~~~i~~~i~kl-~~--~n~e~~~~li~~i~~~~~~~~~~i~~yA~l~a~L~~~~~~f~ 75 (248)
T d1uw4b_ 2 PPLQEYVRKL--LYKDLSKVT-TEKVLRQMRKL-PW--QDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG 75 (248)
T ss_dssp CHHHHHHHHH--HHTTCSTTS-HHHHHHHHHTS-CT--TSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHH
T ss_pred CCHHHHHHHH--HHHHCCHHH-HHHHHHHHHHC-CC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8089999999--986478857-99999999977-99--987999899999862502864679999999999998727999
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 86056799999999985234269352245798889799993799431368899999999
Q 004625 284 SDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQL 342 (741)
Q Consensus 284 ~~~le~~LK~~Y~ayv~n~k~tn~~tl~~InfMkN~~vEL~~ld~~~aYq~AF~YIRQL 342 (741)
..+++.+.-.+-..+-.+-...+-..+..| ..+.|||.... ++..+.|..|++|
T Consensus 76 ~~~id~l~e~f~~~~e~~~~~~~~r~~~~v----~figeLy~~~~-v~~~~i~~~l~~L 129 (248)
T d1uw4b_ 76 IHVVDGVLEDIRLGMEVNQPKFNQRRISSA----KFLGELYNYRM-VESAVIFRTLYSF 129 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGHHHHHHHH----HHHHHHHHTTS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCC-CCHHHHHHHHHHH
T ss_conf 999999999999999871188999999899----99999998745-7699999999999
No 3
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.72 E-value=8.1 Score=14.59 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 999999999997606888987656578739679999999999
Q 004625 128 VRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVL 169 (741)
Q Consensus 128 lr~li~AFRaA~~~~~~~~~~~~~ky~I~ds~VFn~vi~~~L 169 (741)
++.-+..||.-+..+.-. ...+.+|.=..+|...+....
T Consensus 4 ~~~~~~~f~~~~~~~~~~---~~~~i~V~R~~l~~d~~~~l~ 42 (374)
T d1nd7a_ 4 FRWKLAHFRYLCQSNALP---SHVKINVSRQTLFEDSFQQIM 42 (374)
T ss_dssp HHHHHHHHHHHHHHTCCS---SEEEEEECTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC---CCEEEEECCCCHHHHHHHHHH
T ss_conf 789999999887616898---855999765658999999997
No 4
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.04 E-value=14 Score=13.17 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 55999999999998
Q 004625 107 ITTEMVDSWCNSIR 120 (741)
Q Consensus 107 lT~~~v~~W~~~l~ 120 (741)
++.+.+...++++.
T Consensus 51 ~~rE~~~~l~~el~ 64 (350)
T d1c4za_ 51 VSKEFFQLVVEEIF 64 (350)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHC
T ss_conf 78999999999982
No 5
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.28 E-value=21 Score=12.04 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=22.3
Q ss_pred EECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 0311046877999999882128878875311458999
Q 004625 360 KVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQI 396 (741)
Q Consensus 360 ~VYNWQfi~sL~lWs~VLs~~~~~s~L~pLiYPLvQI 396 (741)
.+.||.=|-+|-.++..|+.+|.+....+++..++.-
T Consensus 92 G~~NWGRIval~~F~~~la~~~~~~~~~~~v~~i~~~ 128 (162)
T d2jm6b1 92 GVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAET 128 (162)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9996499999999999999999980881289999999
No 6
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.25 E-value=30 Score=10.99 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=27.6
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000034753326288899999999999999999
Q 004625 460 LRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLA 493 (741)
Q Consensus 460 f~~~LKvsk~~l~t~~yqd~vie~~~eLL~eyla 493 (741)
...=||+....+-++.+.+.=+.++.+++.+-+.
T Consensus 352 ~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 352 VTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8872265688998589988999999999999996
No 7
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.54 E-value=32 Score=10.84 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHCCC
Q ss_conf 95789999999722102200314146899999999862468996--069999999999997098
Q 004625 223 TDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGA--LPVVAFLFLRDLCIRLGS 284 (741)
Q Consensus 223 td~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~--vrv~AFl~Lr~l~~~~~~ 284 (741)
+++......|+.+..+. .+.+...++..+..+-..+... +|-.|.+++.++....+.
T Consensus 115 ~n~~ir~lALr~L~~i~-----~~~i~~~l~~~V~k~l~~~d~~p~VRk~A~l~l~ki~~~~pd 173 (584)
T d2vgla_ 115 RNPTFMGLALHCIANVG-----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD 173 (584)
T ss_dssp CCHHHHHHHHHHHHHHC-----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 99899999999987379-----988888778999875035898689999999999999986966
No 8
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.64 E-value=35 Score=10.63 Aligned_cols=112 Identities=18% Similarity=0.318 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHHHHHHHHHHHC-----
Q ss_conf 799999999985234269352245798889799993799431----------36889999999999999874120-----
Q 004625 289 DCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPS----------AYQHAFVFIRQLAMILRDAFNVK----- 353 (741)
Q Consensus 289 ~~LK~~Y~ayv~n~k~tn~~tl~~InfMkN~~vEL~~ld~~~----------aYq~AF~YIRQLAihLRnai~~k----- 353 (741)
.+=|.+|.+|...|...|...+..|--.++-.+.|+|-..-+ +-.-+..++..|+-.+|.....-
T Consensus 223 ~lR~~~~~a~~~r~~~~N~~~l~~il~lR~e~A~LLGf~s~A~~~L~~kMA~spe~V~~FL~~L~~~~~p~a~~E~~~L~ 302 (665)
T d1i1ip_ 223 ETRRKMEMAFHTRCKQENTAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFIL 302 (665)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999873224202679999999999989986388979999887650376788999999999971444699999999
Q ss_pred ---CCHH-------HCEECCHHHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf ---1010-------50031104687799999988212---8878875311458999874321256
Q 004625 354 ---TKEA-------FRKVYEWKFINCLELWTGAVCAY---CSEADMKPLAYPLTQIISGVARLVP 405 (741)
Q Consensus 354 ---~Kes-------~k~VYNWQfi~sL~lWs~VLs~~---~~~s~L~pLiYPLvQIi~G~ikLiP 405 (741)
.++. -..+.-|-. .+|+.-+... .+++.|+|- +||-+|+.|+..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~l~pWD~----~Yy~~k~r~~~~~~d~~~l~~Y-Fpl~~vl~gl~~l~~ 362 (665)
T d1i1ip_ 303 SLKKKECEERGFEYDGKINAWDL----HYYMTQTEELKYSVDQESLKEY-FPIEVVTEGLLSIYQ 362 (665)
T ss_dssp HHHHHHHHTTTCCCCSSCCHHHH----HHHHHHHHHHHSCCCHHHHGGG-CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCH----HHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHH
T ss_conf 99877655337776566673317----8888887764212331012455-637889999999999
No 9
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.78 E-value=37 Score=10.42 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=13.6
Q ss_pred HHHHCCHHHHHHHHHHHHHH
Q ss_conf 87501947899546512210
Q 004625 45 RLQEKDPEFFKFLQEHDKEL 64 (741)
Q Consensus 45 ~LkekDPEFyKyLqEnD~~L 64 (741)
-|+..||+.|++|++.+-+.
T Consensus 15 ll~~~dp~L~~hl~~~~i~~ 34 (188)
T d1fkma2 15 LVKRIDADLYNHFQNEHVEF 34 (188)
T ss_dssp HHHHHCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHCCCCE
T ss_conf 99998899999999849991
No 10
>d2pk8a1 d.274.1.1 (A:2-95) Hypothetical protein PF0899 {Pyrococcus furiosus [TaxId: 2261]}
Probab=5.78 E-value=59 Score=9.19 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 19478995465122
Q 004625 49 KDPEFFKFLQEHDK 62 (741)
Q Consensus 49 kDPEFyKyLqEnD~ 62 (741)
--||||+|+.+-=+
T Consensus 32 ~G~e~~ef~~~~~k 45 (94)
T d2pk8a1 32 FGREAYNFLSNLLK 45 (94)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHH
T ss_conf 74899999999998
Done!