Query 004627
Match_columns 741
No_of_seqs 446 out of 3466
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09130 NADH dehydrogenase su 100.0 3E-151 7E-156 1318.4 67.1 670 69-740 1-680 (687)
2 KOG2282 NADH-ubiquinone oxidor 100.0 3E-153 6E-158 1199.6 37.1 675 66-741 29-708 (708)
3 COG3383 Uncharacterized anaero 100.0 2E-132 4E-137 1086.3 44.9 621 68-692 4-777 (978)
4 TIGR01973 NuoG NADH-quinone ox 100.0 6E-125 1E-129 1095.0 54.4 583 72-656 1-603 (603)
5 PRK07860 NADH dehydrogenase su 100.0 2E-124 4E-129 1115.7 56.6 649 68-734 3-714 (797)
6 PRK09129 NADH dehydrogenase su 100.0 7E-124 1E-128 1115.9 61.4 650 69-735 1-703 (776)
7 PRK08166 NADH dehydrogenase su 100.0 4E-117 8E-122 1064.7 54.0 603 69-683 1-683 (847)
8 COG1034 NuoG NADH dehydrogenas 100.0 4E-118 8E-123 1011.7 37.2 666 69-738 1-681 (693)
9 PRK08493 NADH dehydrogenase su 100.0 9.7E-92 2.1E-96 817.9 42.4 537 69-666 1-656 (819)
10 cd02773 MopB_Res-Cmplx1_Nad11 100.0 2.5E-68 5.4E-73 588.0 38.2 373 287-660 1-375 (375)
11 cd02774 MopB_Res-Cmplx1_Nad11- 100.0 4.4E-66 9.5E-71 561.4 34.9 362 287-659 1-365 (366)
12 cd02754 MopB_Nitrate-R-NapA-li 100.0 1.3E-64 2.9E-69 587.5 37.9 435 287-723 1-562 (565)
13 cd02752 MopB_Formate-Dh-Na-lik 100.0 1.5E-64 3.3E-69 582.8 33.7 397 287-691 1-494 (649)
14 cd02753 MopB_Formate-Dh-H Form 100.0 3.3E-64 7.2E-69 577.7 36.0 402 287-693 1-474 (512)
15 cd02766 MopB_3 The MopB_3 CD i 100.0 5E-63 1.1E-67 564.2 34.5 369 287-680 1-447 (501)
16 TIGR03479 DMSO_red_II_alp DMSO 100.0 2.2E-62 4.8E-67 592.3 39.1 400 259-661 25-643 (912)
17 TIGR01553 formate-DH-alph form 100.0 1.7E-62 3.6E-67 589.5 33.7 396 282-679 41-695 (1009)
18 TIGR01591 Fdh-alpha formate de 100.0 8.8E-62 1.9E-66 575.1 38.1 400 288-690 1-510 (671)
19 cd02750 MopB_Nitrate-R-NarG-li 100.0 3.7E-61 8.1E-66 544.0 33.3 375 286-683 5-459 (461)
20 cd02771 MopB_NDH-1_NuoG2-N7 Mo 100.0 6E-61 1.3E-65 545.3 33.9 388 287-683 1-455 (472)
21 cd02768 MopB_NADH-Q-OR-NuoG2 M 100.0 1.2E-60 2.6E-65 529.5 32.1 366 287-660 1-386 (386)
22 cd02762 MopB_1 The MopB_1 CD i 100.0 2.9E-60 6.2E-65 547.1 33.0 392 287-691 1-500 (539)
23 cd02759 MopB_Acetylene-hydrata 100.0 3E-60 6.5E-65 539.4 32.1 353 287-664 1-430 (477)
24 cd02772 MopB_NDH-1_NuoG2 MopB_ 100.0 1E-59 2.2E-64 526.6 33.0 364 287-660 1-414 (414)
25 cd02755 MopB_Thiosulfate-R-lik 100.0 7.2E-60 1.6E-64 532.8 30.7 355 286-662 1-430 (454)
26 TIGR01706 NAPA periplasmic nit 100.0 4.9E-59 1.1E-63 559.4 34.2 383 283-666 40-577 (830)
27 PRK13532 nitrate reductase cat 100.0 1.3E-58 2.7E-63 557.0 35.5 384 282-666 39-577 (830)
28 cd02765 MopB_4 The MopB_4 CD i 100.0 2.4E-58 5.3E-63 532.7 31.9 409 287-723 1-554 (567)
29 cd02770 MopB_DmsA-EC This CD ( 100.0 2.4E-58 5.3E-63 538.6 31.7 433 288-723 2-591 (617)
30 cd02763 MopB_2 The MopB_2 CD i 100.0 4.6E-58 1E-62 531.4 32.1 388 287-679 1-553 (679)
31 cd02764 MopB_PHLH The MopB_PHL 100.0 2.1E-58 4.5E-63 529.6 22.8 403 279-696 39-511 (524)
32 PRK15488 thiosulfate reductase 100.0 7E-57 1.5E-61 538.8 33.9 388 283-673 41-542 (759)
33 cd02751 MopB_DMSOR-like The Mo 100.0 3.5E-57 7.6E-62 528.4 29.4 396 293-694 3-549 (609)
34 cd02757 MopB_Arsenate-R This C 100.0 6.9E-57 1.5E-61 515.5 31.2 357 285-663 1-459 (523)
35 PTZ00305 NADH:ubiquinone oxido 100.0 9.2E-58 2E-62 463.0 20.7 206 69-275 68-276 (297)
36 cd00368 Molybdopterin-Binding 100.0 1.5E-56 3.3E-61 494.4 32.3 341 287-660 1-374 (374)
37 cd02756 MopB_Arsenite-Ox Arsen 100.0 3.3E-56 7.2E-61 514.9 34.1 386 303-692 72-629 (676)
38 cd02758 MopB_Tetrathionate-Ra 100.0 1.2E-55 2.6E-60 518.9 33.3 391 287-679 1-631 (735)
39 PRK14990 anaerobic dimethyl su 100.0 1.7E-55 3.6E-60 530.2 32.8 410 283-693 56-617 (814)
40 TIGR02166 dmsA_ynfE anaerobic 100.0 1.9E-55 4.1E-60 529.7 32.7 410 283-693 42-600 (797)
41 cd02760 MopB_Phenylacetyl-CoA- 100.0 1.6E-54 3.4E-59 510.5 31.5 378 287-665 1-623 (760)
42 cd02769 MopB_DMSOR-BSOR-TMAOR 100.0 5E-53 1.1E-57 492.4 28.4 394 293-694 3-549 (609)
43 TIGR02693 arsenite_ox_L arseni 100.0 6E-51 1.3E-55 484.8 31.8 394 280-677 6-605 (806)
44 COG0243 BisC Anaerobic dehydro 100.0 1.4E-51 3.1E-56 493.0 26.1 373 286-663 41-532 (765)
45 PRK14991 tetrathionate reducta 100.0 3.8E-50 8.3E-55 486.0 33.1 380 283-663 72-741 (1031)
46 TIGR03129 one_C_dehyd_B formyl 100.0 1.4E-49 3.1E-54 445.9 30.8 353 288-660 2-421 (421)
47 PRK09939 putative oxidoreducta 100.0 4.9E-49 1.1E-53 461.2 32.7 360 325-687 93-595 (759)
48 TIGR00509 bisC_fam molybdopter 100.0 2.4E-49 5.1E-54 473.9 29.4 362 297-666 5-517 (770)
49 TIGR01701 Fdhalpha-like oxidor 100.0 8.5E-49 1.8E-53 463.3 32.7 361 324-686 83-580 (743)
50 TIGR02164 torA trimethylamine- 100.0 6.4E-49 1.4E-53 472.4 28.8 395 288-691 42-603 (822)
51 cd02761 MopB_FmdB-FwdB The Mop 100.0 5.7E-48 1.2E-52 432.1 29.7 349 288-660 2-415 (415)
52 cd02767 MopB_ydeP The MopB_yde 100.0 9E-48 1.9E-52 441.0 29.1 331 330-662 54-531 (574)
53 TIGR01580 narG respiratory nit 100.0 5.4E-47 1.2E-51 446.9 34.3 376 284-661 43-834 (1235)
54 PRK15102 trimethylamine N-oxid 100.0 1.7E-47 3.7E-52 460.3 28.8 365 297-666 51-571 (825)
55 PF00384 Molybdopterin: Molybd 100.0 5.5E-47 1.2E-51 426.3 22.2 321 339-659 1-432 (432)
56 PRK07569 bidirectional hydroge 100.0 3.7E-46 8.1E-51 382.7 19.1 206 69-274 3-212 (234)
57 COG1029 FwdB Formylmethanofura 100.0 1.6E-35 3.4E-40 302.4 26.2 352 286-661 4-426 (429)
58 COG5013 NarG Nitrate reductase 100.0 1.2E-28 2.7E-33 274.0 25.2 375 283-660 44-829 (1227)
59 PRK12814 putative NADPH-depend 99.9 1.6E-21 3.4E-26 229.3 11.4 150 69-224 3-155 (652)
60 PF13510 Fer2_4: 2Fe-2S iron-s 99.8 1.9E-21 4.2E-26 165.8 5.7 76 69-145 3-82 (82)
61 TIGR00384 dhsB succinate dehyd 99.7 6.3E-18 1.4E-22 172.3 0.1 168 73-268 13-210 (220)
62 PRK12577 succinate dehydrogena 99.6 6E-17 1.3E-21 174.3 1.3 62 73-137 17-79 (329)
63 PRK12576 succinate dehydrogena 99.6 1.7E-16 3.7E-21 166.4 1.8 167 74-268 24-222 (279)
64 PRK05950 sdhB succinate dehydr 99.6 2.2E-16 4.7E-21 162.3 1.0 168 73-268 16-214 (232)
65 PF10588 NADH-G_4Fe-4S_3: NADH 99.5 2.1E-14 4.6E-19 104.7 2.7 41 151-191 1-41 (41)
66 PRK12385 fumarate reductase ir 99.5 7.1E-15 1.5E-19 151.4 -1.0 66 74-142 24-93 (244)
67 PLN00129 succinate dehydrogena 99.4 1.4E-14 3E-19 150.1 0.0 163 78-268 65-260 (276)
68 PRK06259 succinate dehydrogena 99.4 8.4E-14 1.8E-18 159.1 5.6 68 74-144 20-88 (486)
69 PRK07570 succinate dehydrogena 99.4 3.1E-14 6.7E-19 146.5 0.8 59 77-136 22-90 (250)
70 PRK08640 sdhB succinate dehydr 99.4 1.8E-14 3.9E-19 148.6 -1.4 164 77-268 25-225 (249)
71 PRK13552 frdB fumarate reducta 99.4 4.5E-14 9.8E-19 144.9 0.7 59 75-136 24-83 (239)
72 PRK08764 ferredoxin; Provision 99.4 2E-13 4.4E-18 128.0 4.7 99 159-271 35-134 (135)
73 PRK12386 fumarate reductase ir 99.4 4.7E-14 1E-18 144.9 0.3 168 74-269 19-217 (251)
74 PRK05113 electron transport co 99.4 2.4E-13 5.3E-18 134.8 3.8 104 167-282 71-174 (191)
75 COG0479 FrdB Succinate dehydro 99.4 9E-14 1.9E-18 139.7 0.1 166 75-268 20-214 (234)
76 PRK12575 succinate dehydrogena 99.3 2.4E-13 5.1E-18 138.9 2.0 164 78-269 26-218 (235)
77 PF04879 Molybdop_Fe4S4: Molyb 99.3 2.2E-12 4.9E-17 101.5 4.3 54 283-336 1-54 (55)
78 TIGR01944 rnfB electron transp 99.2 1E-11 2.2E-16 120.7 4.8 102 160-273 63-164 (165)
79 COG1143 NuoI Formate hydrogenl 99.1 2.4E-11 5.1E-16 117.3 2.9 85 188-273 32-116 (172)
80 PRK06991 ferredoxin; Provision 99.1 3.2E-11 7E-16 125.3 4.0 110 159-281 35-144 (270)
81 PRK12814 putative NADPH-depend 99.0 2.3E-10 5E-15 135.1 4.2 71 164-235 567-639 (652)
82 cd00207 fer2 2Fe-2S iron-sulfu 98.9 2E-09 4.3E-14 92.4 6.3 65 71-141 2-84 (84)
83 KOG3256 NADH:ubiquinone oxidor 98.9 5.4E-10 1.2E-14 103.2 2.7 67 206-273 105-171 (212)
84 PF14697 Fer4_21: 4Fe-4S diclu 98.9 3.7E-10 8E-15 89.9 0.9 56 209-271 3-59 (59)
85 TIGR02008 fdx_plant ferredoxin 98.8 6.9E-09 1.5E-13 91.7 6.6 66 75-146 11-94 (97)
86 PF09326 DUF1982: Domain of un 98.8 2.6E-09 5.6E-14 81.0 1.9 31 704-734 19-49 (49)
87 PF13187 Fer4_9: 4Fe-4S diclus 98.7 3.8E-09 8.3E-14 83.0 2.1 53 213-269 1-55 (55)
88 PRK10713 2Fe-2S ferredoxin Yfa 98.7 3.3E-08 7.2E-13 84.9 6.4 67 69-141 3-83 (84)
89 COG2080 CoxS Aerobic-type carb 98.7 3E-08 6.5E-13 92.9 6.2 99 69-175 3-109 (156)
90 TIGR00403 ndhI NADH-plastoquin 98.7 9.6E-09 2.1E-13 101.5 3.0 85 188-273 39-123 (183)
91 PRK11433 aldehyde oxidoreducta 98.7 6.7E-08 1.4E-12 96.1 8.5 107 68-182 50-163 (217)
92 TIGR02936 fdxN_nitrog ferredox 98.6 1E-08 2.2E-13 89.6 2.2 68 201-272 10-90 (91)
93 PRK08222 hydrogenase 4 subunit 98.6 3E-08 6.5E-13 97.8 5.1 85 181-273 8-94 (181)
94 PRK12387 formate hydrogenlyase 98.6 3.5E-08 7.6E-13 97.5 5.6 91 177-273 4-94 (180)
95 CHL00134 petF ferredoxin; Vali 98.6 7.6E-08 1.7E-12 85.3 6.6 65 75-145 13-95 (99)
96 PF12838 Fer4_7: 4Fe-4S diclus 98.6 9.8E-09 2.1E-13 79.8 0.6 52 213-268 1-52 (52)
97 PRK08348 NADH-plastoquinone ox 98.6 2.7E-08 5.8E-13 91.7 3.5 62 203-273 33-94 (120)
98 PTZ00038 ferredoxin; Provision 98.6 9.9E-08 2.1E-12 93.3 6.8 71 70-146 98-186 (191)
99 PRK05888 NADH dehydrogenase su 98.5 5.9E-08 1.3E-12 94.5 4.3 83 186-273 28-118 (164)
100 TIGR02007 fdx_isc ferredoxin, 98.5 1E-07 2.2E-12 86.2 5.2 75 72-151 11-108 (110)
101 TIGR03198 pucE xanthine dehydr 98.5 2.3E-07 4.9E-12 87.8 7.5 97 69-173 3-105 (151)
102 PRK09908 xanthine dehydrogenas 98.5 3.2E-07 7E-12 87.0 8.5 103 69-179 8-116 (159)
103 PLN02593 adrenodoxin-like ferr 98.5 2.2E-07 4.8E-12 84.8 6.7 71 70-145 3-103 (117)
104 PLN00071 photosystem I subunit 98.5 6.6E-08 1.4E-12 82.5 2.6 62 209-275 6-69 (81)
105 TIGR03193 4hydroxCoAred 4-hydr 98.5 3.6E-07 7.8E-12 85.8 7.6 96 70-173 2-104 (148)
106 PF00111 Fer2: 2Fe-2S iron-sul 98.5 1.4E-07 3E-12 79.9 4.5 44 72-121 1-48 (78)
107 PLN03136 Ferredoxin; Provision 98.5 2.5E-07 5.4E-12 87.4 6.4 64 77-146 66-145 (148)
108 CHL00014 ndhI NADH dehydrogena 98.4 1.3E-07 2.7E-12 92.3 3.3 68 206-273 53-120 (167)
109 CHL00065 psaC photosystem I su 98.4 1.1E-07 2.4E-12 81.1 2.0 62 209-275 6-69 (81)
110 TIGR03048 PS_I_psaC photosyste 98.4 1.3E-07 2.8E-12 80.6 2.2 64 207-275 3-68 (80)
111 PRK06273 ferredoxin; Provision 98.4 1.5E-07 3.3E-12 91.0 2.2 64 205-272 42-111 (165)
112 PF13237 Fer4_10: 4Fe-4S diclu 98.4 8.8E-08 1.9E-12 74.4 0.4 51 207-265 2-52 (52)
113 COG2878 Predicted NADH:ubiquin 98.3 1.3E-07 2.8E-12 89.8 1.1 102 169-282 74-175 (198)
114 TIGR02512 Fe_only_hydrog hydro 98.3 1.6E-07 3.4E-12 103.7 1.8 67 207-273 2-71 (374)
115 PRK05713 hypothetical protein; 98.3 6.3E-07 1.4E-11 96.7 5.9 68 70-143 2-85 (312)
116 TIGR01971 NuoI NADH-quinone ox 98.3 3.7E-07 8.1E-12 84.3 3.5 59 212-274 43-104 (122)
117 PRK02651 photosystem I subunit 98.3 2.9E-07 6.2E-12 78.6 2.5 62 209-275 6-69 (81)
118 PTZ00490 Ferredoxin superfamil 98.3 1.4E-06 3.1E-11 81.7 6.9 73 68-145 34-138 (143)
119 COG2871 NqrF Na+-transporting 98.3 9.3E-07 2E-11 89.6 5.6 71 70-145 37-128 (410)
120 PRK10882 hydrogenase 2 protein 98.3 9.3E-08 2E-12 102.3 -2.0 83 161-272 107-205 (328)
121 TIGR01372 soxA sarcosine oxida 98.3 1.7E-06 3.6E-11 107.2 8.3 75 69-144 12-95 (985)
122 PRK09626 oorD 2-oxoglutarate-a 98.3 5.5E-07 1.2E-11 80.6 3.0 64 205-273 9-74 (103)
123 PRK09624 porD pyuvate ferredox 98.2 4E-07 8.8E-12 81.5 1.8 59 205-273 44-102 (105)
124 COG0633 Fdx Ferredoxin [Energy 98.2 2.7E-06 5.9E-11 75.8 6.5 68 70-143 5-96 (102)
125 PRK09623 vorD 2-ketoisovalerat 98.2 6.2E-07 1.3E-11 80.4 2.4 59 205-273 44-102 (105)
126 COG1146 Ferredoxin [Energy pro 98.2 5.1E-07 1.1E-11 74.3 1.5 59 208-273 4-62 (68)
127 PRK09625 porD pyruvate flavodo 98.2 4.6E-07 1E-11 84.8 1.3 55 206-270 53-107 (133)
128 TIGR00402 napF ferredoxin-type 98.2 1.4E-06 3.1E-11 77.5 4.2 66 209-286 31-96 (101)
129 TIGR01941 nqrF NADH:ubiquinone 98.2 2.9E-06 6.3E-11 94.9 7.3 71 69-144 31-122 (405)
130 PRK05464 Na(+)-translocating N 98.2 3.2E-06 7E-11 94.7 7.7 73 66-143 32-125 (409)
131 PF13085 Fer2_3: 2Fe-2S iron-s 98.2 8.9E-07 1.9E-11 79.3 2.2 63 73-138 17-80 (110)
132 PRK07609 CDP-6-deoxy-delta-3,4 98.1 2.8E-06 6.2E-11 92.8 6.4 70 69-144 4-91 (339)
133 COG1144 Pyruvate:ferredoxin ox 98.1 4.9E-07 1.1E-11 76.1 0.0 57 207-272 30-86 (91)
134 PRK10194 ferredoxin-type prote 98.1 1.3E-06 2.8E-11 85.0 2.5 79 209-299 31-118 (163)
135 PRK14028 pyruvate ferredoxin o 98.1 1.1E-06 2.5E-11 94.6 1.4 68 206-273 241-310 (312)
136 TIGR02179 PorD_KorD 2-oxoacid: 98.0 2.3E-06 4.9E-11 72.5 2.3 57 206-272 19-75 (78)
137 PRK13984 putative oxidoreducta 98.0 3.1E-06 6.8E-11 99.7 3.9 80 188-272 22-106 (604)
138 COG1145 NapF Ferredoxin [Energ 98.0 1.8E-06 3.9E-11 76.3 1.1 61 208-275 25-86 (99)
139 PRK11872 antC anthranilate dio 98.0 8.2E-06 1.8E-10 89.2 6.3 67 70-142 3-92 (340)
140 TIGR02912 sulfite_red_C sulfit 98.0 3.2E-06 7E-11 91.2 2.6 58 208-273 165-222 (314)
141 TIGR02494 PFLE_PFLC glycyl-rad 98.0 2.3E-06 4.9E-11 91.6 1.4 61 205-272 41-102 (295)
142 TIGR02060 aprB adenosine phosp 97.9 2.9E-06 6.4E-11 78.9 1.4 59 208-274 4-67 (132)
143 PRK09477 napH quinol dehydroge 97.9 2.9E-06 6.4E-11 89.4 1.1 58 209-272 205-262 (271)
144 TIGR02163 napH_ ferredoxin-typ 97.9 3.2E-06 6.9E-11 88.3 0.9 54 210-271 199-253 (255)
145 TIGR03224 benzo_boxA benzoyl-C 97.9 3.7E-06 8E-11 94.0 1.3 66 207-283 5-70 (411)
146 TIGR02176 pyruv_ox_red pyruvat 97.9 4.7E-06 1E-10 103.6 2.0 69 207-275 678-764 (1165)
147 COG3894 Uncharacterized metal- 97.9 1.6E-05 3.5E-10 86.5 5.4 77 70-152 4-96 (614)
148 TIGR03311 Se_dep_Molyb_1 selen 97.8 2.4E-05 5.3E-10 94.7 7.4 102 71-180 2-107 (848)
149 PRK10684 HCP oxidoreductase, N 97.8 2.3E-05 5E-10 85.4 6.1 65 70-140 251-331 (332)
150 PRK09800 putative hypoxanthine 97.8 2.5E-05 5.5E-10 95.3 6.8 98 69-173 2-105 (956)
151 COG1149 MinD superfamily P-loo 97.8 1E-05 2.2E-10 82.7 2.4 58 207-274 64-121 (284)
152 PRK07118 ferredoxin; Validated 97.8 7.9E-06 1.7E-10 86.2 1.4 63 207-273 163-234 (280)
153 PRK08318 dihydropyrimidine deh 97.8 7.6E-06 1.6E-10 92.0 1.1 65 208-277 338-403 (420)
154 PF13183 Fer4_8: 4Fe-4S diclus 97.8 7.4E-07 1.6E-11 70.5 -5.0 56 210-267 1-56 (57)
155 TIGR02700 flavo_MJ0208 archaeo 97.8 6.9E-06 1.5E-10 84.7 0.5 55 208-273 144-198 (234)
156 TIGR00397 mauM_napG MauM/NapG 97.7 1.7E-05 3.7E-10 80.4 2.9 57 212-272 53-113 (213)
157 PF13247 Fer4_11: 4Fe-4S diclu 97.7 1.7E-05 3.8E-10 69.8 2.0 54 205-271 33-95 (98)
158 TIGR01660 narH nitrate reducta 97.7 1.7E-05 3.7E-10 86.5 2.3 61 202-271 171-233 (492)
159 PRK12769 putative oxidoreducta 97.7 2.8E-05 6E-10 92.5 3.9 92 205-300 3-100 (654)
160 PRK09898 hypothetical protein; 97.6 1.4E-05 3E-10 81.0 0.3 55 206-273 148-202 (208)
161 PRK09476 napG quinol dehydroge 97.6 2E-05 4.4E-10 81.9 1.5 59 211-273 58-120 (254)
162 PF12837 Fer4_6: 4Fe-4S bindin 97.6 1.8E-05 3.9E-10 50.7 0.5 20 207-226 2-21 (24)
163 TIGR02160 PA_CoA_Oxy5 phenylac 97.6 8.6E-05 1.9E-09 81.6 6.2 64 68-137 263-345 (352)
164 PRK10194 ferredoxin-type prote 97.5 4.4E-05 9.6E-10 74.3 2.6 65 205-273 59-125 (163)
165 TIGR03478 DMSO_red_II_bet DMSO 97.5 3E-05 6.6E-10 81.5 1.5 61 204-273 121-183 (321)
166 TIGR03313 Se_sel_red_Mo probab 97.5 9.4E-05 2E-09 90.5 5.8 94 72-173 1-101 (951)
167 PRK07118 ferredoxin; Validated 97.5 4.3E-05 9.2E-10 80.7 2.4 67 209-286 210-276 (280)
168 TIGR02963 xanthine_xdhA xanthi 97.5 0.00015 3.3E-09 82.1 6.8 98 70-173 1-114 (467)
169 PRK10330 formate dehydrogenase 97.5 3.9E-05 8.4E-10 76.0 1.5 63 207-273 82-156 (181)
170 TIGR03478 DMSO_red_II_bet DMSO 97.4 4.5E-05 9.8E-10 80.2 0.7 55 206-273 156-219 (321)
171 PF12797 Fer4_2: 4Fe-4S bindin 97.4 6.1E-05 1.3E-09 46.6 0.9 20 207-226 3-22 (22)
172 PRK09476 napG quinol dehydroge 97.4 5E-05 1.1E-09 79.0 0.9 69 203-273 128-207 (254)
173 COG0437 HybA Fe-S-cluster-cont 97.4 8E-05 1.7E-09 73.8 2.1 55 206-273 94-157 (203)
174 PRK14993 tetrathionate reducta 97.4 6.7E-05 1.4E-09 77.7 1.6 55 206-273 124-187 (244)
175 TIGR03149 cyt_nit_nrfC cytochr 97.4 7.8E-05 1.7E-09 76.4 2.0 55 206-273 119-183 (225)
176 COG2768 Uncharacterized Fe-S c 97.3 9.8E-05 2.1E-09 76.0 1.9 53 206-270 187-239 (354)
177 COG2221 DsrA Dissimilatory sul 97.3 7.7E-05 1.7E-09 77.9 1.0 54 207-272 167-220 (317)
178 PF13484 Fer4_16: 4Fe-4S doubl 97.3 0.00011 2.4E-09 60.1 1.7 55 213-267 1-67 (67)
179 TIGR03287 methan_mark_16 putat 97.3 5.6E-05 1.2E-09 82.1 -0.4 53 206-272 296-350 (391)
180 TIGR01582 FDH-beta formate deh 97.3 7.2E-05 1.6E-09 78.8 0.4 55 206-273 118-181 (283)
181 COG1142 HycB Fe-S-cluster-cont 97.2 0.00011 2.4E-09 70.4 1.3 59 206-273 76-140 (165)
182 PRK10330 formate dehydrogenase 97.2 0.00023 4.9E-09 70.5 3.4 92 206-301 4-103 (181)
183 TIGR03149 cyt_nit_nrfC cytochr 97.2 0.00019 4.1E-09 73.6 2.7 56 206-270 86-143 (225)
184 TIGR02745 ccoG_rdxA_fixG cytoc 97.2 0.00015 3.3E-09 80.8 1.5 43 211-270 230-272 (434)
185 TIGR00397 mauM_napG MauM/NapG 97.2 0.00019 4E-09 72.9 2.0 65 207-273 126-198 (213)
186 PRK10882 hydrogenase 2 protein 97.1 0.00018 3.9E-09 77.3 1.8 93 207-301 40-159 (328)
187 TIGR02951 DMSO_dmsB DMSO reduc 97.1 0.00018 3.9E-09 69.9 1.6 54 206-272 89-151 (161)
188 PRK00783 DNA-directed RNA poly 97.1 0.00017 3.8E-09 75.7 1.5 59 203-272 161-219 (263)
189 TIGR02951 DMSO_dmsB DMSO reduc 97.1 0.00017 3.7E-09 70.0 1.3 65 207-272 4-84 (161)
190 PRK12809 putative oxidoreducta 97.1 0.00026 5.6E-09 84.0 3.0 68 206-273 4-77 (639)
191 PRK12771 putative glutamate sy 97.1 0.0002 4.4E-09 83.7 2.1 58 207-273 499-562 (564)
192 PRK13795 hypothetical protein; 97.1 0.00019 4.1E-09 84.6 1.8 57 207-272 576-632 (636)
193 TIGR02969 mam_aldehyde_ox alde 97.1 0.00066 1.4E-08 86.1 6.3 98 70-173 3-117 (1330)
194 COG1148 HdrA Heterodisulfide r 97.1 0.00015 3.3E-09 79.3 0.5 57 205-275 553-610 (622)
195 cd07030 RNAP_D D subunit of Ar 97.1 0.0002 4.3E-09 75.1 1.2 77 183-272 143-219 (259)
196 TIGR00273 iron-sulfur cluster- 97.0 0.0001 2.3E-09 82.3 -1.1 62 209-270 290-361 (432)
197 TIGR03336 IOR_alpha indolepyru 97.0 0.00016 3.6E-09 84.8 0.4 51 205-269 543-595 (595)
198 PRK14993 tetrathionate reducta 97.0 0.00036 7.7E-09 72.3 2.7 64 207-271 46-119 (244)
199 PF00037 Fer4: 4Fe-4S binding 97.0 0.00024 5.3E-09 45.6 0.9 19 208-226 2-20 (24)
200 PRK05035 electron transport co 97.0 0.00017 3.7E-09 85.0 0.3 58 210-268 368-425 (695)
201 PF13370 Fer4_13: 4Fe-4S singl 97.0 0.00015 3.3E-09 57.5 -0.1 56 210-270 2-57 (58)
202 TIGR00314 cdhA CO dehydrogenas 97.0 0.00014 3E-09 85.1 -0.8 60 206-268 393-453 (784)
203 PRK09326 F420H2 dehydrogenase 97.0 0.00038 8.1E-09 76.1 2.3 58 208-269 8-70 (341)
204 PRK00941 acetyl-CoA decarbonyl 97.0 9.3E-05 2E-09 86.6 -2.6 61 205-268 397-458 (781)
205 PF12798 Fer4_3: 4Fe-4S bindin 96.9 0.0002 4.4E-09 40.3 0.0 15 254-268 1-15 (15)
206 COG1139 Uncharacterized conser 96.9 0.00038 8.3E-09 75.3 2.1 58 211-268 307-374 (459)
207 cd01916 ACS_1 Acetyl-CoA synth 96.9 0.00011 2.3E-09 86.2 -2.5 62 205-269 358-420 (731)
208 PRK12769 putative oxidoreducta 96.9 0.00037 8E-09 83.0 1.7 34 432-471 326-359 (654)
209 TIGR01582 FDH-beta formate deh 96.9 0.00027 5.9E-09 74.4 0.4 59 205-272 84-144 (283)
210 PRK09853 putative selenate red 96.9 0.00047 1E-08 84.0 2.4 57 208-269 882-943 (1019)
211 COG1142 HycB Fe-S-cluster-cont 96.9 0.00066 1.4E-08 65.2 2.7 85 207-298 5-95 (165)
212 PRK09898 hypothetical protein; 96.9 0.00067 1.5E-08 68.7 3.0 58 206-272 115-174 (208)
213 TIGR03315 Se_ygfK putative sel 96.8 0.00055 1.2E-08 83.7 2.5 61 207-273 876-942 (1012)
214 TIGR01660 narH nitrate reducta 96.8 0.00041 8.8E-09 76.0 1.2 55 206-273 208-271 (492)
215 PLN00192 aldehyde oxidase 96.8 0.0017 3.6E-08 82.6 6.6 103 69-177 5-124 (1344)
216 PF13459 Fer4_15: 4Fe-4S singl 96.8 0.00043 9.4E-09 56.3 0.8 59 207-270 1-64 (65)
217 COG4231 Indolepyruvate ferredo 96.7 0.00078 1.7E-08 76.3 2.7 58 205-273 570-629 (640)
218 PRK05659 sulfur carrier protei 96.7 0.0043 9.3E-08 50.5 6.4 57 70-142 1-59 (66)
219 PF00037 Fer4: 4Fe-4S binding 96.7 0.00058 1.3E-08 43.8 0.8 18 253-270 7-24 (24)
220 TIGR03294 FrhG coenzyme F420 h 96.7 0.00063 1.4E-08 69.8 1.6 54 208-272 170-223 (228)
221 COG1148 HdrA Heterodisulfide r 96.7 0.00047 1E-08 75.6 0.5 63 205-270 219-289 (622)
222 COG0437 HybA Fe-S-cluster-cont 96.7 0.00072 1.6E-08 67.1 1.7 91 206-303 12-118 (203)
223 TIGR03290 CoB_CoM_SS_C CoB--Co 96.6 0.00036 7.8E-09 66.4 -0.8 59 212-272 2-66 (144)
224 PRK12809 putative oxidoreducta 96.6 0.00085 1.8E-08 79.7 1.6 34 432-471 309-342 (639)
225 PF13247 Fer4_11: 4Fe-4S diclu 96.6 0.00097 2.1E-08 58.8 1.4 57 208-273 3-61 (98)
226 TIGR01945 rnfC electron transp 96.5 0.00082 1.8E-08 75.8 0.8 58 209-268 360-418 (435)
227 COG1141 Fer Ferredoxin [Energy 96.2 0.0015 3.3E-08 53.1 0.5 21 207-227 3-23 (68)
228 PF12837 Fer4_6: 4Fe-4S bindin 96.2 0.001 2.2E-08 42.6 -0.4 17 253-269 8-24 (24)
229 COG1245 Predicted ATPase, RNas 96.2 0.0047 1E-07 67.6 4.3 93 209-314 8-108 (591)
230 PRK11168 glpC sn-glycerol-3-ph 96.1 0.0014 3E-08 73.3 -0.5 60 209-268 4-70 (396)
231 TIGR02066 dsrB sulfite reducta 95.9 0.0022 4.9E-08 69.6 0.4 52 214-272 183-234 (341)
232 TIGR03379 glycerol3P_GlpC glyc 95.7 0.0027 5.9E-08 71.0 -0.3 60 211-270 4-70 (397)
233 COG4656 RnfC Predicted NADH:ub 95.7 0.0016 3.4E-08 72.4 -2.2 61 213-274 366-426 (529)
234 PRK15055 anaerobic sulfite red 95.5 0.0057 1.2E-07 66.2 1.6 23 204-226 218-240 (344)
235 KOG3309 Ferredoxin [Energy pro 95.4 0.067 1.5E-06 50.0 8.0 70 70-144 44-144 (159)
236 TIGR00276 iron-sulfur cluster 95.4 0.005 1.1E-07 65.2 0.7 59 211-269 158-226 (282)
237 PRK13409 putative ATPase RIL; 95.3 0.01 2.2E-07 69.7 2.8 95 209-314 7-107 (590)
238 COG1152 CdhA CO dehydrogenase/ 95.3 0.0022 4.8E-08 71.3 -2.6 56 210-268 398-454 (772)
239 PF12838 Fer4_7: 4Fe-4S diclus 95.2 0.0046 1E-07 47.7 -0.4 42 253-294 1-42 (52)
240 COG1029 FwdB Formylmethanofura 95.0 0.13 2.8E-06 54.8 9.7 113 495-615 69-199 (429)
241 PRK11274 glcF glycolate oxidas 95.0 0.0032 6.9E-08 70.6 -2.3 59 210-268 21-89 (407)
242 PRK07440 hypothetical protein; 95.0 0.1 2.2E-06 43.1 7.0 58 69-142 4-63 (70)
243 PF12800 Fer4_4: 4Fe-4S bindin 95.0 0.0051 1.1E-07 35.9 -0.5 14 212-225 2-15 (17)
244 COG2221 DsrA Dissimilatory sul 94.8 0.031 6.7E-07 58.9 4.3 87 253-371 173-264 (317)
245 PF13534 Fer4_17: 4Fe-4S diclu 94.4 0.0016 3.4E-08 52.1 -5.0 54 213-267 1-59 (61)
246 PRK05863 sulfur carrier protei 94.4 0.14 3E-06 41.6 6.4 56 70-142 1-58 (65)
247 PF12798 Fer4_3: 4Fe-4S bindin 94.2 0.021 4.5E-07 32.2 0.8 13 214-226 1-13 (15)
248 PRK08053 sulfur carrier protei 94.1 0.18 4E-06 41.0 6.7 58 70-142 1-59 (66)
249 TIGR02486 RDH reductive dehalo 94.1 0.025 5.5E-07 60.8 2.0 17 211-227 204-220 (314)
250 PF13484 Fer4_16: 4Fe-4S doubl 93.9 0.015 3.2E-07 47.4 -0.3 19 254-272 2-20 (67)
251 TIGR02910 sulfite_red_A sulfit 93.8 0.034 7.4E-07 59.9 2.3 22 205-226 213-234 (334)
252 COG0247 GlpC Fe-S oxidoreducta 93.7 0.0062 1.3E-07 67.7 -3.8 62 210-273 7-79 (388)
253 PRK06083 sulfur carrier protei 93.6 0.29 6.3E-06 41.9 7.1 58 69-142 18-77 (84)
254 COG1143 NuoI Formate hydrogenl 93.6 0.038 8.3E-07 53.8 1.9 48 254-301 57-111 (172)
255 TIGR00315 cdhB CO dehydrogenas 93.5 1.3 2.8E-05 42.8 12.3 112 364-481 20-145 (162)
256 PRK00945 acetyl-CoA decarbonyl 93.0 1.8 4E-05 42.2 12.6 116 364-485 27-157 (171)
257 TIGR01683 thiS thiamine biosyn 93.0 0.28 6.2E-06 39.6 6.0 56 72-142 1-57 (64)
258 COG3862 Uncharacterized protei 93.0 0.076 1.6E-06 46.1 2.6 55 286-352 3-59 (117)
259 PF13237 Fer4_10: 4Fe-4S diclu 92.7 0.057 1.2E-06 41.5 1.3 20 206-225 33-52 (52)
260 PRK15449 ferredoxin-like prote 92.5 0.11 2.4E-06 45.4 3.0 55 205-270 23-79 (95)
261 PF13187 Fer4_9: 4Fe-4S diclus 92.3 0.044 9.4E-07 42.6 0.3 24 253-276 1-24 (55)
262 PF12800 Fer4_4: 4Fe-4S bindin 92.2 0.071 1.5E-06 31.1 1.0 15 253-267 3-17 (17)
263 TIGR02484 CitB CitB domain pro 92.2 0.026 5.7E-07 61.1 -1.5 52 209-268 11-64 (372)
264 TIGR02163 napH_ ferredoxin-typ 92.2 0.05 1.1E-06 56.9 0.6 52 214-270 168-219 (255)
265 PRK05352 Na(+)-translocating N 92.1 0.025 5.5E-07 63.7 -1.8 55 211-267 373-430 (448)
266 COG1600 Uncharacterized Fe-S p 92.0 0.044 9.5E-07 58.9 -0.1 56 212-267 185-249 (337)
267 PRK08364 sulfur carrier protei 92.0 0.59 1.3E-05 38.5 6.7 55 70-142 5-63 (70)
268 PRK13984 putative oxidoreducta 92.0 0.076 1.6E-06 62.8 1.8 20 207-226 81-100 (604)
269 TIGR01936 nqrA NADH:ubiquinone 91.7 0.029 6.3E-07 63.1 -1.8 54 211-267 372-429 (447)
270 cd00565 ThiS ThiaminS ubiquiti 91.5 0.59 1.3E-05 37.8 6.1 57 71-142 1-58 (65)
271 KOG3256 NADH:ubiquinone oxidor 91.5 0.069 1.5E-06 50.3 0.7 22 205-226 143-164 (212)
272 COG2104 ThiS Sulfur transfer p 91.4 0.85 1.8E-05 37.4 6.8 58 69-141 2-60 (68)
273 COG1150 HdrC Heterodisulfide r 91.1 0.02 4.4E-07 56.0 -3.4 59 211-273 38-104 (195)
274 PLN02906 xanthine dehydrogenas 90.9 0.19 4.1E-06 64.4 3.9 92 84-180 1-104 (1319)
275 PF13746 Fer4_18: 4Fe-4S diclu 90.2 0.12 2.6E-06 42.5 0.9 18 209-226 47-64 (69)
276 PF14697 Fer4_21: 4Fe-4S diclu 90.2 0.18 4E-06 40.0 1.9 22 253-274 7-28 (59)
277 PRK08222 hydrogenase 4 subunit 90.0 0.13 2.9E-06 50.8 1.2 21 206-226 67-87 (181)
278 PRK12387 formate hydrogenlyase 89.9 0.12 2.6E-06 51.1 0.8 21 206-226 67-87 (180)
279 PRK15033 tricarballylate utili 89.8 0.065 1.4E-06 58.4 -1.3 54 207-266 28-81 (389)
280 KOG0430 Xanthine dehydrogenase 89.4 0.7 1.5E-05 56.3 6.7 97 70-173 3-116 (1257)
281 COG1145 NapF Ferredoxin [Energ 89.3 0.18 3.9E-06 44.0 1.4 19 253-271 30-48 (99)
282 TIGR02064 dsrA sulfite reducta 88.6 0.2 4.4E-06 55.7 1.4 44 218-272 248-291 (402)
283 PRK13030 2-oxoacid ferredoxin 88.6 0.25 5.5E-06 61.5 2.4 52 206-266 623-677 (1159)
284 PRK09626 oorD 2-oxoglutarate-a 88.6 0.33 7.1E-06 43.3 2.5 21 253-273 17-37 (103)
285 PRK08348 NADH-plastoquinone ox 88.5 0.27 5.9E-06 45.1 2.0 20 253-272 43-62 (120)
286 PRK09477 napH quinol dehydroge 88.1 0.21 4.5E-06 52.8 1.1 51 216-271 177-227 (271)
287 TIGR03048 PS_I_psaC photosyste 87.9 0.25 5.4E-06 41.8 1.2 21 253-273 9-29 (80)
288 PRK06944 sulfur carrier protei 87.5 0.76 1.7E-05 37.0 3.9 57 70-142 1-58 (65)
289 PRK07696 sulfur carrier protei 87.3 1.8 4E-05 35.3 6.0 57 70-141 1-59 (67)
290 KOG3049 Succinate dehydrogenas 87.2 0.34 7.4E-06 47.7 1.9 52 83-137 75-127 (288)
291 PF13746 Fer4_18: 4Fe-4S diclu 86.9 0.28 6E-06 40.4 0.9 16 252-267 50-65 (69)
292 PRK15449 ferredoxin-like prote 86.8 0.26 5.6E-06 43.1 0.7 21 206-226 55-75 (95)
293 KOG0063 RNAse L inhibitor, ABC 86.6 0.18 3.9E-06 55.2 -0.4 38 253-293 51-88 (592)
294 COG2440 FixX Ferredoxin-like p 86.5 0.46 9.9E-06 41.3 2.0 55 205-269 25-83 (99)
295 PRK05113 electron transport co 86.4 0.54 1.2E-05 46.9 2.9 22 252-273 114-135 (191)
296 TIGR02745 ccoG_rdxA_fixG cytoc 85.9 0.2 4.3E-06 56.3 -0.6 39 252-299 231-269 (434)
297 PRK09193 indolepyruvate ferred 85.9 0.47 1E-05 59.2 2.5 52 206-266 637-691 (1165)
298 PLN00071 photosystem I subunit 85.7 0.3 6.5E-06 41.4 0.6 21 253-273 10-30 (81)
299 PRK06488 sulfur carrier protei 85.7 2.7 5.9E-05 33.9 6.2 57 70-142 1-58 (65)
300 PRK13029 2-oxoacid ferredoxin 85.6 0.5 1.1E-05 58.8 2.6 52 206-266 651-705 (1186)
301 COG1149 MinD superfamily P-loo 85.5 0.54 1.2E-05 48.8 2.4 44 253-300 70-114 (284)
302 PRK06273 ferredoxin; Provision 85.4 0.34 7.4E-06 47.1 0.9 20 253-272 50-69 (165)
303 PRK06437 hypothetical protein; 85.4 3.1 6.8E-05 33.9 6.4 53 72-142 5-60 (67)
304 TIGR02936 fdxN_nitrog ferredox 85.3 0.37 8E-06 41.7 1.0 19 208-226 66-84 (91)
305 PRK06991 ferredoxin; Provision 84.7 0.47 1E-05 49.9 1.5 21 253-273 86-106 (270)
306 PRK02651 photosystem I subunit 84.6 0.48 1E-05 40.1 1.3 21 253-273 10-30 (81)
307 TIGR01971 NuoI NADH-quinone ox 84.5 0.41 8.8E-06 44.0 0.9 21 253-273 44-64 (122)
308 TIGR02486 RDH reductive dehalo 84.5 0.41 8.8E-06 51.6 1.0 21 253-273 206-226 (314)
309 COG3383 Uncharacterized anaero 84.5 0.15 3.2E-06 59.2 -2.4 61 161-228 146-208 (978)
310 PRK05888 NADH dehydrogenase su 84.5 0.58 1.3E-05 45.5 2.0 21 253-273 59-79 (164)
311 COG0348 NapH Polyferredoxin [E 84.1 0.36 7.9E-06 53.7 0.4 60 206-272 205-265 (386)
312 COG4630 XdhA Xanthine dehydrog 83.4 2.7 5.9E-05 45.3 6.5 97 68-173 7-122 (493)
313 TIGR02066 dsrB sulfite reducta 83.1 0.49 1.1E-05 51.6 1.0 22 205-226 207-228 (341)
314 CHL00065 psaC photosystem I su 82.9 0.46 1E-05 40.3 0.5 21 253-273 10-30 (81)
315 TIGR00276 iron-sulfur cluster 82.9 0.42 9E-06 50.7 0.3 19 253-271 160-178 (282)
316 COG1035 FrhB Coenzyme F420-red 82.8 0.62 1.3E-05 50.2 1.5 46 209-265 2-47 (332)
317 TIGR02179 PorD_KorD 2-oxoacid: 82.7 0.75 1.6E-05 38.5 1.7 21 253-273 26-46 (78)
318 PRK09853 putative selenate red 82.2 0.6 1.3E-05 57.6 1.3 77 253-330 887-973 (1019)
319 PRK09625 porD pyruvate flavodo 81.4 0.85 1.8E-05 42.7 1.7 19 208-226 85-103 (133)
320 TIGR01944 rnfB electron transp 81.0 1.4 3.1E-05 42.8 3.3 21 253-273 114-134 (165)
321 TIGR02494 PFLE_PFLC glycyl-rad 80.7 0.76 1.7E-05 49.1 1.3 18 253-270 49-66 (295)
322 TIGR00403 ndhI NADH-plastoquin 80.7 0.77 1.7E-05 45.5 1.2 24 208-235 98-121 (183)
323 PRK09624 porD pyuvate ferredox 80.6 0.83 1.8E-05 40.9 1.3 19 208-226 77-95 (105)
324 COG1146 Ferredoxin [Energy pro 80.3 0.76 1.6E-05 37.5 0.9 22 205-226 34-55 (68)
325 PRK08322 acetolactate synthase 79.3 4.7 0.0001 47.1 7.4 108 358-473 183-297 (547)
326 PF12797 Fer4_2: 4Fe-4S bindin 79.3 0.69 1.5E-05 28.9 0.3 14 253-266 9-22 (22)
327 PRK07418 acetolactate synthase 79.2 5.2 0.00011 47.5 7.9 108 358-472 211-325 (616)
328 PF06902 Fer4_19: Divergent 4F 79.0 0.42 9.1E-06 38.7 -1.0 55 206-271 7-61 (64)
329 PF03990 DUF348: Domain of unk 78.6 3.9 8.4E-05 30.1 4.2 30 69-98 1-31 (43)
330 CHL00014 ndhI NADH dehydrogena 78.2 1 2.3E-05 43.9 1.3 19 208-226 95-113 (167)
331 TIGR02060 aprB adenosine phosp 78.2 1 2.2E-05 42.2 1.1 25 208-236 41-65 (132)
332 PRK07979 acetolactate synthase 78.0 6 0.00013 46.5 7.9 110 357-473 192-308 (574)
333 TIGR00173 menD 2-succinyl-5-en 78.0 14 0.0003 41.9 10.4 107 358-473 198-309 (432)
334 PRK09623 vorD 2-ketoisovalerat 77.5 0.93 2E-05 40.6 0.7 20 253-272 52-71 (105)
335 TIGR02176 pyruv_ox_red pyruvat 77.2 1.2 2.6E-05 56.5 1.7 20 253-272 684-703 (1165)
336 PRK06048 acetolactate synthase 76.8 6.3 0.00014 46.2 7.5 108 358-472 194-308 (561)
337 PRK09107 acetolactate synthase 76.7 6.1 0.00013 46.7 7.4 110 357-473 198-316 (595)
338 PRK06965 acetolactate synthase 76.2 6.7 0.00014 46.3 7.5 109 358-472 208-323 (587)
339 COG0028 IlvB Thiamine pyrophos 75.7 6.7 0.00015 45.8 7.2 106 359-472 188-300 (550)
340 cd02752 MopB_Formate-Dh-Na-lik 75.7 5.9 0.00013 47.1 6.9 47 572-618 168-224 (649)
341 CHL00099 ilvB acetohydroxyacid 75.6 9.1 0.0002 45.2 8.4 108 358-472 204-318 (585)
342 COG1245 Predicted ATPase, RNas 75.3 1.2 2.5E-05 49.6 0.7 26 204-235 44-69 (591)
343 PRK07282 acetolactate synthase 75.2 8.8 0.00019 45.1 8.1 108 358-472 197-311 (566)
344 PLN02470 acetolactate synthase 75.1 8.1 0.00017 45.6 7.8 107 358-472 202-314 (585)
345 PRK13409 putative ATPase RIL; 74.7 1.2 2.5E-05 52.6 0.7 24 208-235 45-68 (590)
346 PRK08979 acetolactate synthase 74.7 8.3 0.00018 45.4 7.8 109 357-472 192-307 (572)
347 PRK08764 ferredoxin; Provision 74.5 2.7 5.9E-05 39.4 3.0 20 253-272 86-105 (135)
348 PRK11840 bifunctional sulfur c 74.4 7.1 0.00015 41.9 6.3 60 70-144 1-61 (326)
349 COG2768 Uncharacterized Fe-S c 74.3 1.3 2.8E-05 46.5 0.8 21 252-272 193-213 (354)
350 cd07030 RNAP_D D subunit of Ar 74.0 1.3 2.8E-05 46.4 0.8 21 253-273 170-190 (259)
351 PRK08617 acetolactate synthase 73.3 9.3 0.0002 44.7 7.7 107 358-472 188-302 (552)
352 TIGR03224 benzo_boxA benzoyl-C 73.2 1.3 2.8E-05 49.8 0.5 44 253-300 11-54 (411)
353 PRK08327 acetolactate synthase 72.7 10 0.00022 44.6 7.8 105 358-473 207-313 (569)
354 COG1453 Predicted oxidoreducta 72.6 0.83 1.8E-05 49.3 -1.1 18 250-267 349-366 (391)
355 TIGR01504 glyox_carbo_lig glyo 72.3 12 0.00025 44.3 8.2 109 357-472 188-304 (588)
356 PRK08155 acetolactate synthase 72.3 10 0.00022 44.5 7.7 109 358-473 198-313 (564)
357 TIGR02418 acolac_catab acetola 72.2 9 0.00019 44.7 7.2 108 358-473 182-297 (539)
358 TIGR01973 NuoG NADH-quinone ox 72.2 8 0.00017 45.8 6.9 50 572-621 361-420 (603)
359 PRK09326 F420H2 dehydrogenase 72.2 1.3 2.8E-05 48.4 0.2 22 253-274 13-34 (341)
360 PRK08273 thiamine pyrophosphat 71.6 8.3 0.00018 45.6 6.8 105 357-472 194-304 (597)
361 TIGR03129 one_C_dehyd_B formyl 71.2 20 0.00044 40.0 9.6 49 573-621 137-202 (421)
362 PRK12775 putative trifunctiona 70.9 2.1 4.5E-05 53.7 1.7 52 87-142 196-250 (1006)
363 COG4624 Iron only hydrogenase 70.6 1.3 2.9E-05 48.0 -0.1 62 212-282 2-64 (411)
364 PRK06725 acetolactate synthase 70.4 13 0.00027 43.8 8.0 109 358-473 201-316 (570)
365 PRK08527 acetolactate synthase 70.4 12 0.00025 44.0 7.7 107 358-471 190-303 (563)
366 PRK06466 acetolactate synthase 70.2 11 0.00024 44.3 7.5 109 358-473 193-308 (574)
367 TIGR02512 Fe_only_hydrog hydro 70.2 2.1 4.6E-05 47.4 1.4 19 253-271 8-26 (374)
368 TIGR02912 sulfite_red_C sulfit 70.0 1.8 4E-05 46.7 0.8 21 206-226 195-215 (314)
369 PRK14028 pyruvate ferredoxin o 69.7 2 4.3E-05 46.4 0.9 19 253-271 248-266 (312)
370 TIGR00402 napF ferredoxin-type 69.6 1.9 4.2E-05 38.2 0.7 21 206-226 60-80 (101)
371 PRK08611 pyruvate oxidase; Pro 69.0 14 0.0003 43.5 7.9 102 358-472 190-297 (576)
372 cd02761 MopB_FmdB-FwdB The Mop 69.0 23 0.00049 39.6 9.4 47 573-619 131-194 (415)
373 TIGR02720 pyruv_oxi_spxB pyruv 69.0 10 0.00022 44.7 6.7 106 358-473 187-298 (575)
374 PRK13795 hypothetical protein; 68.7 1.5 3.2E-05 52.1 -0.3 46 253-300 582-627 (636)
375 PF00205 TPP_enzyme_M: Thiamin 68.7 2.1 4.4E-05 40.0 0.7 108 361-474 1-115 (137)
376 PRK09259 putative oxalyl-CoA d 68.5 8.5 0.00018 45.2 6.0 107 358-472 200-308 (569)
377 PRK06276 acetolactate synthase 68.3 12 0.00026 44.2 7.2 108 358-472 190-304 (586)
378 TIGR02700 flavo_MJ0208 archaeo 67.7 1.8 3.9E-05 44.7 0.1 21 253-273 149-169 (234)
379 PRK08978 acetolactate synthase 67.2 13 0.00029 43.3 7.2 108 358-472 183-297 (548)
380 TIGR00118 acolac_lg acetolacta 67.2 13 0.00029 43.5 7.2 108 358-472 188-302 (558)
381 PRK07710 acetolactate synthase 67.0 15 0.00032 43.2 7.6 107 359-472 203-316 (571)
382 PRK06456 acetolactate synthase 66.8 13 0.00028 43.7 7.1 109 358-472 194-309 (572)
383 PRK07789 acetolactate synthase 66.7 14 0.0003 43.9 7.3 108 358-472 218-332 (612)
384 PRK05035 electron transport co 66.7 2 4.3E-05 51.3 0.2 20 253-272 371-390 (695)
385 PRK08199 thiamine pyrophosphat 66.5 13 0.00029 43.5 7.1 111 358-472 191-308 (557)
386 COG2878 Predicted NADH:ubiquin 66.4 1.8 3.8E-05 42.1 -0.2 25 253-277 116-140 (198)
387 PRK06546 pyruvate dehydrogenas 66.3 13 0.00028 43.9 6.9 102 358-473 188-295 (578)
388 cd02766 MopB_3 The MopB_3 CD i 65.6 37 0.0008 39.2 10.4 50 431-481 327-376 (501)
389 COG1600 Uncharacterized Fe-S p 65.4 2.1 4.5E-05 46.3 0.1 21 253-273 186-206 (337)
390 PRK11269 glyoxylate carboligas 65.0 20 0.00044 42.3 8.3 107 358-471 190-304 (591)
391 PRK06112 acetolactate synthase 64.7 16 0.00034 43.1 7.2 108 358-472 200-319 (578)
392 PRK06457 pyruvate dehydrogenas 64.4 20 0.00043 41.9 8.0 101 359-472 183-289 (549)
393 PF08115 Toxin_28: SFI toxin f 64.1 3.2 7E-05 28.1 0.7 18 256-283 18-35 (35)
394 PLN02573 pyruvate decarboxylas 63.6 13 0.00029 43.7 6.3 110 357-473 210-327 (578)
395 PRK06882 acetolactate synthase 63.5 20 0.00044 42.1 7.9 108 358-472 193-307 (574)
396 TIGR02910 sulfite_red_A sulfit 62.9 3 6.4E-05 45.2 0.7 19 208-226 297-315 (334)
397 PRK07449 2-succinyl-5-enolpyru 62.5 28 0.0006 40.9 8.8 104 360-473 211-321 (568)
398 cd01410 SIRT7 SIRT7: Eukaryoti 61.7 13 0.00029 37.5 5.1 45 428-475 151-195 (206)
399 PRK06154 hypothetical protein; 60.9 21 0.00047 41.8 7.4 106 358-472 201-313 (565)
400 TIGR03457 sulphoacet_xsc sulfo 60.7 16 0.00034 43.1 6.3 109 358-472 183-300 (579)
401 PRK00945 acetyl-CoA decarbonyl 60.5 47 0.001 32.5 8.3 40 496-538 25-64 (171)
402 KOG0063 RNAse L inhibitor, ABC 60.4 4 8.6E-05 45.2 1.0 56 205-270 43-98 (592)
403 cd02753 MopB_Formate-Dh-H Form 59.9 38 0.00083 39.1 9.2 50 572-621 155-213 (512)
404 PRK07524 hypothetical protein; 59.7 16 0.00035 42.5 6.1 109 358-472 188-300 (535)
405 PRK14138 NAD-dependent deacety 59.3 19 0.00041 37.4 5.8 47 428-477 174-220 (244)
406 TIGR03287 methan_mark_16 putat 59.2 5.7 0.00012 43.8 2.0 19 253-271 303-323 (391)
407 cd00368 Molybdopterin-Binding 58.8 21 0.00045 39.1 6.5 49 572-620 155-212 (374)
408 PRK08493 NADH dehydrogenase su 58.8 5.5 0.00012 48.5 2.0 16 211-226 203-218 (819)
409 PF13534 Fer4_17: 4Fe-4S diclu 58.2 5.2 0.00011 31.6 1.1 18 209-226 41-58 (61)
410 TIGR03290 CoB_CoM_SS_C CoB--Co 57.8 3 6.5E-05 39.5 -0.3 16 253-268 3-18 (144)
411 COG1144 Pyruvate:ferredoxin ox 57.6 6.8 0.00015 33.7 1.8 26 253-278 36-61 (91)
412 TIGR01945 rnfC electron transp 57.4 4.2 9.1E-05 46.1 0.7 19 252-270 363-381 (435)
413 PRK00783 DNA-directed RNA poly 57.0 3.9 8.4E-05 43.0 0.3 21 253-273 170-190 (263)
414 PRK08266 hypothetical protein; 57.0 19 0.00041 42.0 6.1 103 358-471 192-296 (542)
415 TIGR03315 Se_ygfK putative sel 56.9 3.8 8.3E-05 50.9 0.3 61 252-314 881-950 (1012)
416 PRK07525 sulfoacetaldehyde ace 56.8 21 0.00045 42.2 6.4 112 357-472 186-304 (588)
417 PRK09124 pyruvate dehydrogenas 56.8 25 0.00055 41.3 7.1 103 358-473 188-296 (574)
418 PF00205 TPP_enzyme_M: Thiamin 56.8 10 0.00022 35.3 3.1 40 495-538 1-40 (137)
419 COG1150 HdrC Heterodisulfide r 56.8 3.1 6.7E-05 41.1 -0.4 51 253-303 40-101 (195)
420 TIGR03394 indol_phenyl_DC indo 56.8 14 0.00031 43.0 5.0 108 358-472 188-303 (535)
421 PF13183 Fer4_8: 4Fe-4S diclus 56.6 4.7 0.0001 31.2 0.6 15 212-226 41-55 (57)
422 COG4070 Predicted peptidyl-pro 56.2 12 0.00025 40.7 3.6 30 70-99 2-31 (512)
423 PRK12771 putative glutamate sy 56.1 5.2 0.00011 46.9 1.2 20 207-226 536-555 (564)
424 COG3592 Uncharacterized conser 55.0 2.7 5.8E-05 33.9 -1.0 53 207-270 18-70 (74)
425 COG1139 Uncharacterized conser 55.0 4.2 9.1E-05 44.9 0.1 20 250-269 306-325 (459)
426 PRK11168 glpC sn-glycerol-3-ph 54.9 5.2 0.00011 44.6 0.9 38 431-469 160-197 (396)
427 PRK08640 sdhB succinate dehydr 54.2 4.1 8.9E-05 42.4 -0.1 18 252-269 152-169 (249)
428 PRK08318 dihydropyrimidine deh 53.2 5 0.00011 45.2 0.4 19 208-226 373-391 (420)
429 PRK15055 anaerobic sulfite red 53.1 4.3 9.4E-05 44.2 -0.1 17 210-226 305-321 (344)
430 PTZ00408 NAD-dependent deacety 52.7 33 0.00071 35.6 6.3 42 430-474 170-211 (242)
431 TIGR00384 dhsB succinate dehyd 52.6 2 4.3E-05 43.9 -2.7 71 156-226 130-208 (220)
432 cd02759 MopB_Acetylene-hydrata 51.8 91 0.002 35.7 10.5 48 432-481 329-376 (477)
433 PRK00054 dihydroorotate dehydr 51.6 9.4 0.0002 39.6 2.1 41 87-131 196-238 (250)
434 cd02755 MopB_Thiosulfate-R-lik 51.5 90 0.0019 35.5 10.3 48 432-481 330-377 (454)
435 TIGR03393 indolpyr_decarb indo 51.3 26 0.00057 40.8 6.0 109 357-472 191-307 (539)
436 TIGR01553 formate-DH-alph form 50.8 28 0.00061 43.8 6.4 47 572-618 220-275 (1009)
437 PRK07064 hypothetical protein; 50.6 27 0.00058 40.8 5.9 102 358-471 190-297 (544)
438 cd01413 SIR2_Af2 SIR2_Af2: Arc 50.3 23 0.00049 36.2 4.6 44 428-474 167-210 (222)
439 PRK12778 putative bifunctional 50.0 22 0.00048 43.3 5.3 48 87-142 196-250 (752)
440 TIGR03294 FrhG coenzyme F420 h 49.4 2 4.4E-05 44.1 -3.2 21 253-273 175-195 (228)
441 TIGR00315 cdhB CO dehydrogenas 48.7 28 0.00061 33.7 4.7 113 496-618 18-148 (162)
442 PRK00481 NAD-dependent deacety 48.7 37 0.00079 35.2 6.0 43 430-475 175-217 (242)
443 COG1453 Predicted oxidoreducta 48.2 21 0.00046 38.9 4.1 48 176-226 315-365 (391)
444 PRK08166 NADH dehydrogenase su 48.2 87 0.0019 38.8 10.1 119 357-481 479-606 (847)
445 TIGR03127 RuMP_HxlB 6-phospho 48.0 1.6E+02 0.0034 28.6 10.2 91 358-470 17-107 (179)
446 TIGR00314 cdhA CO dehydrogenas 48.0 4.6 9.9E-05 48.3 -1.0 30 65-96 229-258 (784)
447 cd02770 MopB_DmsA-EC This CD ( 47.7 35 0.00076 40.5 6.4 47 572-618 165-224 (617)
448 COG1737 RpiR Transcriptional r 47.6 93 0.002 33.0 9.0 106 358-480 117-223 (281)
449 PRK05858 hypothetical protein; 46.8 27 0.00059 40.7 5.2 104 358-472 190-295 (542)
450 PF14453 ThiS-like: ThiS-like 46.6 27 0.00058 27.6 3.4 26 71-96 2-27 (57)
451 cd02765 MopB_4 The MopB_4 CD i 46.3 14 0.00031 43.3 2.8 49 572-620 158-215 (567)
452 cd02757 MopB_Arsenate-R This C 45.8 1.2E+02 0.0025 35.3 10.2 52 571-622 160-222 (523)
453 cd01412 SIRT5_Af1_CobB SIRT5_A 45.6 43 0.00093 34.1 5.8 44 430-476 162-205 (224)
454 TIGR00273 iron-sulfur cluster- 45.2 8.9 0.00019 43.3 0.8 22 249-270 290-311 (432)
455 PRK07569 bidirectional hydroge 45.0 10 0.00023 39.0 1.2 23 210-236 188-210 (234)
456 cd01409 SIRT4 SIRT4: Eukaryoti 44.6 30 0.00065 36.3 4.6 45 428-475 200-244 (260)
457 PRK07570 succinate dehydrogena 44.6 8.1 0.00017 40.3 0.3 21 159-179 152-173 (250)
458 PRK10886 DnaA initiator-associ 44.2 65 0.0014 32.3 6.7 40 430-472 107-146 (196)
459 TIGR03254 oxalate_oxc oxalyl-C 44.1 36 0.00079 39.8 5.7 82 358-443 193-276 (554)
460 cd05009 SIS_GlmS_GlmD_2 SIS (S 44.1 1.7E+02 0.0036 27.2 9.4 99 360-473 2-100 (153)
461 cd01668 TGS_RelA_SpoT TGS_RelA 44.0 34 0.00073 26.4 3.8 54 72-141 4-57 (60)
462 PRK06222 ferredoxin-NADP(+) re 43.4 45 0.00097 35.3 5.8 54 87-142 196-250 (281)
463 PRK13936 phosphoheptose isomer 42.9 96 0.0021 31.0 7.8 38 431-471 110-147 (197)
464 PRK11302 DNA-binding transcrip 42.7 92 0.002 32.7 8.1 97 358-471 115-211 (284)
465 TIGR01591 Fdh-alpha formate de 42.1 84 0.0018 37.7 8.5 50 572-621 154-212 (671)
466 COG1941 FrhG Coenzyme F420-red 42.1 19 0.00041 36.8 2.4 43 213-268 191-233 (247)
467 PRK01777 hypothetical protein; 42.0 74 0.0016 27.9 5.9 55 77-142 19-73 (95)
468 PRK12385 fumarate reductase ir 41.9 2.7 5.7E-05 43.7 -3.8 15 212-226 203-217 (244)
469 cd02750 MopB_Nitrate-R-NarG-li 41.6 18 0.00038 41.3 2.5 50 572-621 169-227 (461)
470 TIGR02064 dsrA sulfite reducta 41.4 8.6 0.00019 42.9 -0.1 21 206-226 266-286 (402)
471 PRK00969 hypothetical protein; 41.3 31 0.00068 39.1 4.2 29 70-98 2-30 (508)
472 cd02771 MopB_NDH-1_NuoG2-N7 Mo 41.1 2E+02 0.0042 32.8 11.0 47 432-481 338-384 (472)
473 COG0247 GlpC Fe-S oxidoreducta 41.0 7.3 0.00016 43.1 -0.7 50 253-303 10-76 (388)
474 TIGR03479 DMSO_red_II_alp DMSO 40.9 20 0.00043 44.8 3.0 47 572-618 223-278 (912)
475 cd05013 SIS_RpiR RpiR-like pro 40.2 2E+02 0.0042 25.9 9.0 96 361-473 3-98 (139)
476 PRK09129 NADH dehydrogenase su 40.0 2.1E+02 0.0046 35.0 11.6 49 431-481 536-585 (776)
477 PTZ00409 Sir2 (Silent Informat 39.8 38 0.00083 35.7 4.5 44 428-474 195-238 (271)
478 cd02764 MopB_PHLH The MopB_PHL 39.6 86 0.0019 36.4 7.9 48 432-481 383-430 (524)
479 PRK11557 putative DNA-binding 39.6 1.2E+02 0.0026 31.8 8.4 98 358-472 115-212 (278)
480 COG3367 Uncharacterized conser 39.5 1.8E+02 0.0039 31.4 9.2 83 386-475 108-190 (339)
481 TIGR03336 IOR_alpha indolepyru 39.4 11 0.00025 44.4 0.5 19 207-226 574-592 (595)
482 COG4231 Indolepyruvate ferredo 39.3 11 0.00024 43.8 0.3 19 208-226 604-622 (640)
483 cd01916 ACS_1 Acetyl-CoA synth 39.2 5.7 0.00012 47.4 -2.0 93 66-187 197-290 (731)
484 PRK15482 transcriptional regul 39.1 1.3E+02 0.0028 31.7 8.6 97 358-471 122-218 (285)
485 PRK09939 putative oxidoreducta 38.8 84 0.0018 38.3 7.7 47 572-618 207-280 (759)
486 PRK07092 benzoylformate decarb 38.7 53 0.0011 38.2 5.9 83 358-442 193-282 (530)
487 cd01407 SIR2-fam SIR2 family o 38.5 51 0.0011 33.5 5.1 44 429-475 164-207 (218)
488 cd02767 MopB_ydeP The MopB_yde 38.3 84 0.0018 37.0 7.5 47 572-618 162-234 (574)
489 cd05005 SIS_PHI Hexulose-6-pho 38.3 3.8E+02 0.0082 25.9 11.2 92 358-471 20-111 (179)
490 TIGR02166 dmsA_ynfE anaerobic 38.3 56 0.0012 40.1 6.3 48 572-619 213-274 (797)
491 cd05006 SIS_GmhA Phosphoheptos 38.0 1.2E+02 0.0026 29.5 7.5 39 430-471 99-137 (177)
492 COG3961 Pyruvate decarboxylase 37.9 56 0.0012 37.3 5.5 112 357-477 195-316 (557)
493 PRK07860 NADH dehydrogenase su 37.9 1E+02 0.0022 38.0 8.3 47 572-618 375-432 (797)
494 COG1035 FrhB Coenzyme F420-red 37.8 12 0.00026 40.5 0.4 21 252-273 5-25 (332)
495 PRK12576 succinate dehydrogena 37.8 8.2 0.00018 40.9 -0.9 17 210-226 204-220 (279)
496 cd02754 MopB_Nitrate-R-NapA-li 37.7 23 0.00049 41.5 2.7 49 572-620 156-215 (565)
497 COG0348 NapH Polyferredoxin [E 37.7 13 0.00028 41.4 0.6 16 213-228 246-261 (386)
498 PRK12577 succinate dehydrogena 36.8 6.2 0.00013 43.0 -2.1 23 156-178 144-167 (329)
499 TIGR01382 PfpI intracellular p 36.8 1.8E+02 0.004 27.5 8.5 94 376-470 2-100 (166)
500 PRK12474 hypothetical protein; 36.7 59 0.0013 37.7 5.9 83 358-442 188-276 (518)
No 1
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=3.3e-151 Score=1318.41 Aligned_cols=670 Identities=56% Similarity=0.964 Sum_probs=620.4
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC-CcccccccCCCCCCCEEEccchhH
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS-PKPVASCAMPALPGMKIKTDTPLA 147 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~-~~~~~aC~~~v~~gm~v~t~~~~~ 147 (741)
||+|+|||++|+|++|+||||||+++||+||+||||++|+++|+||||+|||+|. +|+++||+|||++||+|+|+++++
T Consensus 1 m~~~~Idg~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T~s~~v 80 (687)
T PRK09130 1 MVKLKVDGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFTNTPMV 80 (687)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEeCCHHH
Confidence 4899999999999999999999999999999999999999999999999999997 899999999999999999999999
Q ss_pred HHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhh
Q 004627 148 KKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEV 227 (741)
Q Consensus 148 ~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i 227 (741)
+++|+.+|||||+|||+|||+|||+|||+|||+++.||++.+||.+.|+.+++++.+|+|.+|++|||+||||||||.|+
T Consensus 81 ~~~r~~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev 160 (687)
T PRK09130 81 KKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEV 160 (687)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCceEeeeCCE
Q 004627 228 AGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPE 307 (741)
Q Consensus 228 ~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v~vrdg~ 307 (741)
+|..+|++.+||.+++|.++.+++++|++||+|+++||||||++|+|+|++||||+++++|+|++|++||+|.|+++||+
T Consensus 161 ~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~~~~~~r~w~l~~~~sic~~c~vGC~i~v~~r~~~ 240 (687)
T PRK09130 161 AGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSNIRVDTRGRE 240 (687)
T ss_pred cCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccccccccCcceeeeccccCCCCCCCCCeEEEEeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCccccccccccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCCCCHH
Q 004627 308 VMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAE 387 (741)
Q Consensus 308 V~rI~p~~~~~~n~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~~~~e 387 (741)
|+||.|++++++|+||||+||||+|++++++||++||+|. +|+|+++||||||+.||++|+++.++++++++|+..++|
T Consensus 241 V~ri~pr~n~~vN~g~iC~KgRf~~d~l~~~RL~~PliR~-~G~~~~iSWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~E 319 (687)
T PRK09130 241 VMRILPRVNEEVNEEWISDKTRFSWDGLKRQRLDRPYVRK-NGKLVPASWDEAFAAIAAKIKGTPGEKIAAIAGDLADVE 319 (687)
T ss_pred EEEEeCCCCCCCCCcccccccccccccccccccCCccEec-CCceeecCHHHHHHHHHHHHHhcCCCeEEEEECCCCCHH
Confidence 9999999999999999999999999999999999999998 799999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEE
Q 004627 388 SMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGY 467 (741)
Q Consensus 388 ~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiiv 467 (741)
+++++++|++.+|++|+++..............|.++.++.|+++||+||+||+||++++|+++.|++++++++++||++
T Consensus 320 ~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~si~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIiv 399 (687)
T PRK09130 320 SMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAV 399 (687)
T ss_pred HHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCCCHHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEE
Confidence 99999999999999999876543222222234556778999999999999999999999999999999998744469999
Q ss_pred EccCCCCCccccccCCCHHHHHHHHcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCccee
Q 004627 468 IGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLN 547 (741)
Q Consensus 468 Idp~~~~t~~~~~lG~d~~~l~~i~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~ 547 (741)
|||+.+.|++.+++|+++..|.+++.+.+++|+.|+++++++|++|.|+.++.+|..+.+++.+|+.++|+++++|+|++
T Consensus 400 Idpr~~~t~~~~~lg~~~~~l~~l~~g~~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G~~~~~~~G~~ 479 (687)
T PRK09130 400 IGEQADLTYPYEYLGAGPDTLADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAVRDGWNGFN 479 (687)
T ss_pred EcCccccCccccccCCCHHHHHHHHHhHHHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhCCccCCCCCeE
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhhhhhhhhcCCCCCCCC-------CccCceEEEEeccCccCccCCCCCCeEEEEcccCCccccccceeccCCCCC
Q 004627 548 VLLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 620 (741)
Q Consensus 548 ~l~~~~~~~g~~~~g~~p~~~~-------~~~~ik~l~l~g~np~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~ 620 (741)
+++..+|.+|++++|+.|.... ..+++|++|++|+||+....+ +.+|+||||+|+|+|+++||||||+++|+
T Consensus 480 ~L~~~an~~ga~dlG~~p~~~g~~~~~ll~~g~ik~l~llgadp~~~~~~-~~~fvV~qd~~~t~ta~~ADVVLP~a~~~ 558 (687)
T PRK09130 480 VLHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGADEIDISKG-KSAFVIYQGHHGDRGAHRADVILPGAAYT 558 (687)
T ss_pred ecCCchHHHHHHHhcCCCCcccccHHHHHhCCCcCEEEEecCChhhcccc-cCCEEEEecccCCccHhhCCEEEcCCCcc
Confidence 9999999999999999875421 257899999999999754333 34799999999999999999999999999
Q ss_pred CCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCCCCCCCCC--
Q 004627 621 EKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSL-- 698 (741)
Q Consensus 621 Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~~~~~~l~~~~~~~~~-- 698 (741)
|++|+|+|+||++|..+++++|+|++|+||+||++|+++||.+++|++.+++++++.+..|++..++.+++..+....
T Consensus 559 Ek~Gt~~n~egrvq~~~~av~p~gear~dw~Il~~La~~lg~~~~~~~~~~l~~~l~~~~p~~~~i~~~~~~~~~~~~~~ 638 (687)
T PRK09130 559 EKSGTYVNTEGRVQLANRAVFPPGEAKEDWAILRALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITPSKDAKDLAA 638 (687)
T ss_pred ccCCeEECCCCceEEeccccCCCcccchHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCccccCccccCcccchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999888877776431100
Q ss_pred ccccccccCCCCcccccccccccchhhhccHHHHHHHHHHhc
Q 004627 699 KPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK 740 (741)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~fY~~d~i~r~s~~m~~c~~~~~~ 740 (741)
....+......+|.+.+.|||+||+|+|+|++|++|++++.+
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~y~t~~i~r~s~~m~~~~~~~~~ 680 (687)
T PRK09130 639 LASKKGKLSKAPFTSPVKDFYLTNPIARASATMAECSALASG 680 (687)
T ss_pred hhcccccccccccccccccceeccHHHHhhHHHHHHHHHHHh
Confidence 000011233356888899999999999999999999998753
No 2
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=100.00 E-value=2.8e-153 Score=1199.59 Aligned_cols=675 Identities=62% Similarity=1.005 Sum_probs=643.9
Q ss_pred CCCcEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccch
Q 004627 66 PEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTP 145 (741)
Q Consensus 66 ~~~~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~ 145 (741)
+.+.|++||||+.|.|++|+||||||...|++||+||||++|+++|||||||||||++||||.||++||..||+|.|+++
T Consensus 29 ~~~~ievfvd~~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g~~iktns~ 108 (708)
T KOG2282|consen 29 SPNKIEVFVDDQSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKGWKIKTNSD 108 (708)
T ss_pred CccceEEEECCeeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCCceeecCch
Confidence 44559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhh
Q 004627 146 LAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFAT 225 (741)
Q Consensus 146 ~~~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~ 225 (741)
..+++|++||||||.|||||||||||||||+|||++|.||.+++||.+.||.++++++||++++-|+|||+|+|||||..
T Consensus 109 ~~kkaregvmefll~nhpldcpicdqggecdlqdq~m~fgsdr~rf~~~kravedknigplvktimtrciqctrcvrfas 188 (708)
T KOG2282|consen 109 KSKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTEGKRAVEDKNIGPLVKTIMTRCIQCTRCVRFAS 188 (708)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCCCCcCcchHhHhhhcCchhhhhhhhhhhhcCccchHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCceEeeeC
Q 004627 226 EVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRG 305 (741)
Q Consensus 226 ~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v~vrd 305 (741)
|++|+.++|..+||.+++|++|.++.+.++.+||.+|+|||||||+|+|.|++||||+++++|+++++++|+||.|.+|.
T Consensus 189 eiagv~dlgttgrg~d~qigtyvek~f~selsgniidicpvgaltskpyaf~arpwe~rktesidv~davgsnivvs~rt 268 (708)
T KOG2282|consen 189 EIAGVDDLGTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRT 268 (708)
T ss_pred hhcCCcccccccCCCcchHHHHHHHHHHHhhcCCeeeeccccccccCcceeeccccccccccceehhhhccCcEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCCCCCccccccccccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Q 004627 306 PEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSD 385 (741)
Q Consensus 306 g~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~~~ 385 (741)
|+|+||.|+.|+++|++||.||.||.||+++.+||..||+|..+|+++.+||++||..+|..|++.+++.++.++|+..+
T Consensus 269 ~ev~ri~pr~nedineewi~dksrfa~dglkrqrl~~pmvr~~~g~l~~~~we~al~~va~~~~~~~~~~~a~iag~L~d 348 (708)
T KOG2282|consen 269 GEVLRILPRMNEDINEEWISDKSRFAYDGLKRQRLTEPMVRNEDGLLKAVSWEDALSRVAGMLQSFQGKQIAAIAGGLVD 348 (708)
T ss_pred ccceeeccccccccchhhhcccceeeecchhhhhhcccceeCCCCceeeeeHHHHHHHHHHHHHhcCccceeeeccchhh
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEE
Q 004627 386 AESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKV 465 (741)
Q Consensus 386 ~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gaki 465 (741)
.|.+.+++.|.+.+|+.++.++..+.+.+.+.+++|.+|.++..++++|.++++|+||+.+.|..+.|+|+.+..+..++
T Consensus 349 aea~valkdl~nrl~se~v~te~~f~s~gtdlrsnyl~nt~iag~e~adavllVgtnpr~eap~~narirks~~~~~~qv 428 (708)
T KOG2282|consen 349 AEALVALKDLLNRVGSENVCTEEVFPGGGTDLRSNYLLNTTIAGVEEADAVLLVGTNPRFEAPLVNARIRKSWLHNDLQV 428 (708)
T ss_pred HHHHHHHHHHHhhcCcccceeecccCCCCchhhhhhhhhcchhhhcccceeeeecCCccccccccchhhheeeeecccee
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCccccccCCCHHHHHHHHcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcc
Q 004627 466 GYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNG 545 (741)
Q Consensus 466 ivIdp~~~~t~~~~~lG~d~~~l~~i~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g 545 (741)
.+|+|..+++|.+.|+|.+++.+.++++|+++|++.+.++++|+||+|.+..++.+|..+...+..++..++.+ +.|.+
T Consensus 429 ~~Ig~~aDl~y~~~~lga~~~i~~~Ia~g~h~fak~l~~ak~p~iIvga~~l~r~dgaAil~~v~qia~kL~~~-~~w~~ 507 (708)
T KOG2282|consen 429 ALIGPPVDLTYDYDHLGASAKILKDIASGSHPFSKVLKEAKKPAIIVGASALQRNDGAAILAAVSSIAQKLRMT-PDWKV 507 (708)
T ss_pred eeecCCcceeeeeccCCCcHHHHHHHHcCccHHHHHhccCCCceEEEcchhhcccchhHHHHHHHHHHHHhccC-Cccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877 78999
Q ss_pred eeecCchhhhhhhhhcCCCCCCCC-CccCceEEEEeccCc--cCccCCCCCCeEEEEcccCCccccccceeccCCCCCCC
Q 004627 546 LNVLLLNAAQAAALDLGLVPESSN-SIESAKFVYLMGADD--VDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEK 622 (741)
Q Consensus 546 ~~~l~~~~~~~g~~~~g~~p~~~~-~~~~ik~l~l~g~np--~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek 622 (741)
+|+|...+.+.++++.|+.++... ...++|++|++|+|- +..+.+++.+|+||++||.+..+..|||+||++.|.|+
T Consensus 508 ~nvL~~~a~q~~aLd~gyk~ga~~~~k~~~KVlylL~Ad~g~vt~~~lPkd~fvvyqghhgD~ga~~Advvlpgaaytek 587 (708)
T KOG2282|consen 508 LNVLQRIAAQVGALDVGYKAGVAAIRKNPPKVLFLLGADAGKVTRQDLPKDCFVVYQGHHGDVGAPIADVVLPGAAYTEK 587 (708)
T ss_pred ehHHHHhhhhhhhccccchhhhHHHhcCCceEEEEeccCCCcchhhcCChhheEEeeeeecccccccceeecceeeEecc
Confidence 999999899999999999776432 456899999999997 56788999999999999999999999999999999999
Q ss_pred CceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCCCCCCCCCcccc
Q 004627 623 EGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEI 702 (741)
Q Consensus 623 ~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 702 (741)
+|+|+|+||+.|.+.|++.|+|.+|.||+|+++|++.-|.++||++.+++++++.+..|+++.||++++..|...+..-.
T Consensus 588 eGtyvntegr~Qqt~pav~ppg~ar~dwkIirALSevsg~~Lpyssl~~vr~rle~vaPnLVr~de~E~Aafgpsakp~s 667 (708)
T KOG2282|consen 588 EGTYVNTEGRAQQTKPAVSPPGDAREDWKIIRALSEVSGKTLPYDTLDEVRNRLEEVAPNLVRYDDLEPAAFGPQAKPLS 667 (708)
T ss_pred cceeecccCccccccCCCCCCcccccchHHHHHHHHhcCCCCCcccHHHHHHhhhhcCCcceecccccccccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998854321111
Q ss_pred ccccCCCCccc--ccccccccchhhhccHHHHHHHHHHhcC
Q 004627 703 KSEMDLTPFGS--AVENFYMTDSITRASKTMAQCSAMLLKK 741 (741)
Q Consensus 703 ~~~~~~~~~~~--~~~~fY~~d~i~r~s~~m~~c~~~~~~~ 741 (741)
+.....+++++ .+.||||||+|||+|++|+||+++..||
T Consensus 668 ket~~ttp~~p~~~ledfYMTNSISRASk~MAQCsaallKk 708 (708)
T KOG2282|consen 668 KETGSTTPDDPLLELEDFYMTNSISRASKTMAQCSKAVLKK 708 (708)
T ss_pred hhhcCCCCCcchHHHHHHhhhhhhhhhhHHHHHHHHHHhcC
Confidence 12244455665 6799999999999999999999998775
No 3
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.7e-132 Score=1086.35 Aligned_cols=621 Identities=28% Similarity=0.432 Sum_probs=572.9
Q ss_pred CcEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhH
Q 004627 68 DAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLA 147 (741)
Q Consensus 68 ~~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~ 147 (741)
.+++++|||++++|++|+|||+|+.++||+||++|||+.+.+.|.|++|+||||| ++++||+|+|.+||+|.|+++.+
T Consensus 4 ~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG--~l~rsCsT~v~dGm~v~t~s~rv 81 (978)
T COG3383 4 KMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDG--KLVRSCSTPVEDGMVVRTNSERV 81 (978)
T ss_pred eeEEEEECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecC--ceeccccccccCCcEEecccHHH
Confidence 3499999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHhHHHHHHHhhCCCCCCCcCCC-CCChhhhHHhHhCCCCCccccccc--ccccccCcccccccCCcccccchhHHHh
Q 004627 148 KKAREGVMEFLLMNHPLDCPICDQG-GECDLQDQSMAFGSDRGRFTEMKR--SVVDKNLGPLVKTVMTRCIQCTRCVRFA 224 (741)
Q Consensus 148 ~~~r~~~le~~l~~hp~dC~~C~~~-gec~lq~~~~~~g~~~~~~~~~~~--~~~~~~~~p~i~~d~~rCI~C~rCvr~C 224 (741)
+.+|+.+|+.||.||||+|++||.+ |+|+||+.+..+|+..++|.-.++ ..+....+|++.+|+++||.||||||+|
T Consensus 82 k~~r~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qCIlCgRCVeaC 161 (978)
T COG3383 82 KEARREAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQCILCGRCVEAC 161 (978)
T ss_pred HHHHHHHHHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecchheeehhHHHHHH
Confidence 9999999999999999999999996 999999999999999999865544 5566678899999999999999999999
Q ss_pred hhhcCcceeeeecCCCCceeeecccCCc---cccccccccccccCccccccccccccc---------------------c
Q 004627 225 TEVAGVQDLGMLGRGSGEEIGTYVEKLM---TSELSGNVIDICPVGALTSKPFAFKAR---------------------N 280 (741)
Q Consensus 225 ~~i~g~~~l~~~~r~~~~~i~~~~~~~~---~c~~cg~cv~vCP~gAl~~~~~~~~~r---------------------~ 280 (741)
.++++..+|++.+++.+..+.+..+.++ .|..||+|+.|||++||.+|.+..+++ |
T Consensus 162 qevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag~~t~~~~~~~~~mid~~k~~eP 241 (978)
T COG3383 162 QEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEKSMLGEAGYLTGINEDTLEPMIDLVKKVEP 241 (978)
T ss_pred HhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhhhhhhhccccccccccchhhhhhhhhhhccCC
Confidence 9999999999999999999998887555 599999999999999999999998888 9
Q ss_pred cc-----------------eeeeeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCC
Q 004627 281 WE-----------------LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLND 342 (741)
Q Consensus 281 we-----------------l~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~ 342 (741)
|. ++++.|+|++|++||++.|++++++|+||+|.+++|+|.+..|.||+|+++.++ ++||++
T Consensus 242 ~~~~~~ais~~e~~mr~~rikktkTvC~yCGvGCsf~vwtkgreilkv~p~~e~paN~~~tCVKGkFgwdfvns~dRit~ 321 (978)
T COG3383 242 EYGPIFAISEIEAAMRETRIKKTKTVCTYCGVGCSFEVWTKGREILKVQPDPEGPANRISTCVKGKFGWDFVNSRDRITK 321 (978)
T ss_pred CcccchhhhhhhhhhhhhhhcccceeccccCCceeEEEEecCceEEEeccCCCCCCCccceeeeceecccccCChhHhcc
Confidence 98 889999999999999999999999999999999999999999999999999998 999999
Q ss_pred cEEeCCCCCeeecCHHHHHHHHHHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHH-HcCCCcccCCCCcchh----
Q 004627 343 PMIRGADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQS---- 413 (741)
Q Consensus 343 PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~---- 413 (741)
||||. +|.|+++||||||+.+|++|++++ +++|++++|+..++|+.|++|+|++ .+|++|+|..+++|..
T Consensus 322 PlIR~-~~~f~evsWeEAl~~vA~rl~~ik~~yg~dsigfI~Ssk~TNEE~Yl~QKLaR~v~gtNNVDncsR~CqsPa~~ 400 (978)
T COG3383 322 PLIRE-GDRFREVSWEEALDLVASRLREIKEKYGGDSIGFIASSKCTNEENYLMQKLARQVFGTNNVDNCSRYCQSPATD 400 (978)
T ss_pred ccccc-CCceeeeeHHHHHHHHHHHHHHHHHHhCccceeeeccCCCCcHHHHHHHHHHHHHhccCCcccchhhccCcccc
Confidence 99999 899999999999999999999765 6899999999999999999999998 5899999999998743
Q ss_pred --hhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc------CCCH
Q 004627 414 --NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL------GTGP 485 (741)
Q Consensus 414 --~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l------G~d~ 485 (741)
...+|.++. ..+++|++++|++|++|+||.++||++..|+++|.+.+|.||||+|||.+..+..+++ |+|.
T Consensus 401 gL~rTvG~g~d-sgsi~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~ 479 (978)
T COG3383 401 GLFRTVGSGAD-SGSIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDL 479 (978)
T ss_pred cchheeeccCC-CCCHHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccH
Confidence 233343332 3489999999999999999999999999999999887999999999999888776653 7876
Q ss_pred HHHHHHH---------------------------------------cC-----HHHHHHHHhcCCCcEEEEcCCcccCCC
Q 004627 486 KTLLEIA---------------------------------------EG-----RHPFFSAISNAKNPVIIVGAGLFERKD 521 (741)
Q Consensus 486 ~~l~~i~---------------------------------------~g-----i~~lA~~l~~a~~~~Ii~G~g~~~~~~ 521 (741)
.+|.+++ +| ++.+|+.+++++..+|+||+|+.||..
T Consensus 480 a~l~AvakyiideGl~D~~Fi~er~~~f~d~~~~l~~~tle~~E~~TGv~~e~l~~~A~~~~~a~~~ai~w~mGvTqh~~ 559 (978)
T COG3383 480 AWLTAVAKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLEYAEKATGVPAEDLRKAAEMIAEAKSVAILWGMGVTQHSG 559 (978)
T ss_pred HHHHHHHHHHHhCCcchHHHHHhhcccHHHHHHHhhccCHHHHHhhcCCCHHHHHHHHHHHhccCceEEEEEcccccccc
Confidence 6543332 12 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCCCC----C-----------------------------
Q 004627 522 KDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPES----S----------------------------- 568 (741)
Q Consensus 522 g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p~~----~----------------------------- 568 (741)
|.....+|.+|+.+|||+|++|.|.++|.+++|.+|+.|+|..|.. .
T Consensus 560 GsdTs~aisNLll~TGN~Grpg~G~~PLRGhNNVQGa~DmGslP~~LPGyq~isdd~~R~kFE~~wGv~i~~ePGl~~~~ 639 (978)
T COG3383 560 GSDTSTAISNLLLLTGNYGRPGAGAYPLRGHNNVQGACDMGSLPDVLPGYQPISDDAVRAKFEEAWGVKIPREPGLDNPE 639 (978)
T ss_pred CccHHHHHHHHHHHhcccCCCCCCcCcccccCccccccccccCcccCCCccccccHHHHHHHHHHhCCCCCCCCCCCcHH
Confidence 9999999999999999999999999999999999999999976532 0
Q ss_pred ----CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeEee
Q 004627 569 ----NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQT 636 (741)
Q Consensus 569 ----~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~ 636 (741)
..+|++|++|+.|.|++. .++|.+++|+|+||.|+++||.|||||||+++++||+|||+|+|+|+|..
T Consensus 640 Mlea~~~G~~~amYv~GEd~~~sd~dt~~v~~aL~~ldflVVqD~FLteTA~yAdVvLPas~slEKdGTFtNtERRiQrl 719 (978)
T COG3383 640 MLEAIEEGKLKAMYVVGEDPLLSDPDTNHVRAALEALDFLVVQDLFLTETANYADVVLPASASLEKDGTFTNTERRIQRL 719 (978)
T ss_pred HHHHHhcCceeEEEEecccceecCCChHHHHHHHhhcceEEeehhhhhcccccceEEeecCccccccCceechHHHHHHH
Confidence 046899999999999952 46899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCC--CCccccCCC
Q 004627 637 LPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNL--LHVDEREPA 692 (741)
Q Consensus 637 ~~av~P~gear~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~--~~~~~l~~~ 692 (741)
.++++|+|++|+||||+.++|++||.+|.|..+.+|++++++++|.| ++|+.|+..
T Consensus 720 ykvleP~gdsrpDW~Iiq~vA~~lG~~wnY~hpSeIm~EiA~l~P~fAgvsye~Leg~ 777 (978)
T COG3383 720 YKVLEPLGDSRPDWEIIQEVANALGAGWNYSHPSEIMDEIAALTPSFAGVSYERLEGF 777 (978)
T ss_pred HHHhccccCCCccHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhCcccccccHHHhccc
Confidence 99999999999999999999999999999999999999999999988 688888853
No 4
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=100.00 E-value=5.7e-125 Score=1095.03 Aligned_cols=583 Identities=55% Similarity=0.899 Sum_probs=538.5
Q ss_pred EEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCc-ccccccCCCCCCCEEEccchhHHHH
Q 004627 72 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPK-PVASCAMPALPGMKIKTDTPLAKKA 150 (741)
Q Consensus 72 ~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~-~~~aC~~~v~~gm~v~t~~~~~~~~ 150 (741)
|+|||++|++++|+|||+||+++||+||+||||++++++|+||+|+|||+|.++ +++||+|+|++||+|.|++++++++
T Consensus 1 ~~idg~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~ 80 (603)
T TIGR01973 1 IFIDGKELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKA 80 (603)
T ss_pred CEECCEEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHH
Confidence 689999999999999999999999999999999999999999999999999887 9999999999999999999999999
Q ss_pred HhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCc
Q 004627 151 REGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGV 230 (741)
Q Consensus 151 r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~ 230 (741)
|+.+|||||.|||+|||+||++|||+|||+++.||++.+||.+.++.++.+..+|+|.+|++|||+||||||+|.|++|.
T Consensus 81 r~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g~ 160 (603)
T TIGR01973 81 REGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAGV 160 (603)
T ss_pred HHHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999988888877788999999999999999999999999999
Q ss_pred ceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCceEeeeCCEEEE
Q 004627 231 QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMR 310 (741)
Q Consensus 231 ~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v~vrdg~V~r 310 (741)
.+|++.+||.+++|.++.+.+++|++||+|+++||||||++|++.|++|||+++.++|+|++|+.||+|.++++||+|+|
T Consensus 161 ~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~~gC~i~v~v~dg~i~r 240 (603)
T TIGR01973 161 EDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKPYAFKARPWELKSTPSICVHDSVGCNIRVDERNGEIMR 240 (603)
T ss_pred ceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccccccccccccceeccccCCCcCCCCceeEEeECCEEEE
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCCCCHHHH
Q 004627 311 ILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESM 389 (741)
Q Consensus 311 I~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~ 389 (741)
|+|++++|+|+|++|+|||+.++.+| |+||++||+|+++|+|++|||||||++||++|+++ +++++++|+..++|+.
T Consensus 241 v~~~~~~p~n~g~lC~kG~~~~~~~~~~dRl~~Pl~R~~~g~~~~isWdeAl~~ia~kL~~i--~~va~~~~~~~~~e~~ 318 (603)
T TIGR01973 241 ILPRENDEINEEWLCDKGRFGYDGLNRQDRLTKPLLRNQEGNLLEVSWAEALAIAAEKLKAS--SRIGGIAGPRSSLEEL 318 (603)
T ss_pred EECCCCCCCCccccCHhHhhhhhhhcCccccCCceEecCCCceEEcCHHHHHHHHHHHHhcc--CcEEEEeCCCCCHHHH
Confidence 99999999999999999999999998 89999999994489999999999999999999998 7899999998899999
Q ss_pred HHHHHHHHHcCCCcccCCCCcchhh-hhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEE
Q 004627 390 MALKDFLNRMGSNNVWCEGTGAQSN-ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYI 468 (741)
Q Consensus 390 ~~~~~l~~~lGs~~~~~~~~~~~~~-~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivI 468 (741)
+++++|++.+|++|+++..+.+... ......+.++.++.|+++||+||+||+||.+++|++..+++++.+++|+|||+|
T Consensus 319 ~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklivi 398 (603)
T TIGR01973 319 FALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALI 398 (603)
T ss_pred HHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999988766543211 111122345678999999999999999999999999999999876556999999
Q ss_pred ccCCCCCccccc------cCCCHHHHHHHHcCHH-HHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCC
Q 004627 469 GPATDLNYDHQH------LGTGPKTLLEIAEGRH-PFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 541 (741)
Q Consensus 469 dp~~~~t~~~~~------lG~d~~~l~~i~~gi~-~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~ 541 (741)
||+.+.++..++ +|+|.+.+..++.+.. .+|+.|+++++++|++|.|+.++.+|.++.+++.+|+.++|++++
T Consensus 399 dpr~s~ta~~Ad~~l~i~Pgtd~all~~l~~~~~~~~A~~l~~ak~~~ii~g~g~~~~~~g~~~~~a~~~L~~l~G~~~~ 478 (603)
T TIGR01973 399 GIEKWNLTYPANTNLVFHPGLSPKKLDDIASGAHSDIAAALKAAKKPLIIVGDSAYSHLDGAALISAAANIAKVIKVRRK 478 (603)
T ss_pred CCccccchhhhccceeecCCccHHHHHHHHhcccHHHHHHHhhCCCcEEEEechhhcCCCHHHHHHHHHHHHHHhCCccC
Confidence 999999987765 4999999888875543 399999999999999999999999999999999999999999999
Q ss_pred CCcceeecCchhhhhhhhhcCCCCCC--C-CCccCceEEEEeccCccC-------ccCCCCCCeEEEEcccCCccccccc
Q 004627 542 DWNGLNVLLLNAAQAAALDLGLVPES--S-NSIESAKFVYLMGADDVD-------LEKLPNDAFVVYQGHHGDHGVYRAN 611 (741)
Q Consensus 542 ~g~g~~~l~~~~~~~g~~~~g~~p~~--~-~~~~~ik~l~l~g~np~~-------~~al~k~~fvV~~d~~~~eta~~AD 611 (741)
+|+|++++....|..|+.++|..|.. . ...+++|++|++|.||+. .+++++++|+|++|+|+|+|+++||
T Consensus 479 ~g~g~~~~~~~~n~~g~~~~g~~~~~l~~~i~~g~ikal~v~g~Np~~~~~~~~~~~~~~~~~f~Vv~d~f~teTa~~AD 558 (603)
T TIGR01973 479 EWNGLNILSSGANSVGLLDLGGESTGLDAALNLGAADALFLLGADLERALDKTARDALSKADAFVIYQGHHGTETAEKAD 558 (603)
T ss_pred CCceEEEeccchHHHHHHHhcCCCccchhhhhcCCCCEEEEeccCcccCChHHHHHHHHhcCCEEEEecCcCCccHhhCC
Confidence 88899988888899999998876521 1 145889999999999953 2345789999999999999999999
Q ss_pred eeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHH
Q 004627 612 VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRAL 656 (741)
Q Consensus 612 vVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~L 656 (741)
||||+++|+|++|+++|++|++|.++|+++|+||+|+||+||++|
T Consensus 559 vVLPaa~~~Ek~G~~~n~~g~~~~~~~~v~p~ge~r~d~~il~~L 603 (603)
T TIGR01973 559 VILPGAAFTEKSGTYVNLEGRAQRFEQAVKPPGEAREDWRILRAL 603 (603)
T ss_pred EEEcCCCccCCCceEECCCCcCEeeccccCCCccchHHHHHHHhC
Confidence 999999999999999999999999999999999999999999875
No 5
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=1.7e-124 Score=1115.75 Aligned_cols=649 Identities=32% Similarity=0.512 Sum_probs=556.6
Q ss_pred CcEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEcc--ch
Q 004627 68 DAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTD--TP 145 (741)
Q Consensus 68 ~~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~--~~ 145 (741)
.+|+|+|||+++++++|+|||||+.++||+||+||||++++++|+||||+|||+|.+++++||+|+|++||+|.|+ ++
T Consensus 3 ~~v~~~idg~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t~~~s~ 82 (797)
T PRK07860 3 DLVTLTIDGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKTQLTSP 82 (797)
T ss_pred ceEEEEECCEEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEeCCCCH
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred hHHHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccc-cCcccccccCCcccccchhHHHh
Q 004627 146 LAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDK-NLGPLVKTVMTRCIQCTRCVRFA 224 (741)
Q Consensus 146 ~~~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~-~~~p~i~~d~~rCI~C~rCvr~C 224 (741)
+++++|+.+|||||+|||+|||+|||+|||+|||+++.||+..+||.+.|+..++. +.+|+|.+|++|||+|+||||+|
T Consensus 83 ~v~~~r~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~rCI~C~rCvr~c 162 (797)
T PRK07860 83 VADKAQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQVLLDRERCVLCARCTRFS 162 (797)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcceeecccccccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999998777766543 46789999999999999999999
Q ss_pred hhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCceEeee
Q 004627 225 TEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSR 304 (741)
Q Consensus 225 ~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v~vr 304 (741)
.|++|..+|++.+||.+.+|.++.+++++|++||+|+++||||||++|+|+|++|+||+++++|+|++|+.||+|.++++
T Consensus 163 ~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~~~~~~r~w~l~~~~SvC~~C~~GC~l~v~v~ 242 (797)
T PRK07860 163 DQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAYRFRARPFDLVSTPSVCEHCASGCAQRTDHR 242 (797)
T ss_pred HhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccccccccccCcccceecceeCCCCCCCCCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCC
Q 004627 305 GPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRL 383 (741)
Q Consensus 305 dg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~ 383 (741)
||+|+|+.+.+++++|+||+|+|||++++.+| ++||++||+|+++|+|++|||||||++||++|++++. +++++.|+.
T Consensus 243 dg~ivrv~~~~~~~~N~G~lC~KGr~~~~~~~~~dRL~~PliR~~~g~f~~iSWdEAld~ia~kL~~i~~-~ia~~~s~~ 321 (797)
T PRK07860 243 RGKVLRRLAGDDPEVNEEWNCDKGRWAFTYATQPDRITTPLVRDEDGELEPASWSEALAVAARGLAAARG-RVGVLVGGR 321 (797)
T ss_pred CCEEEEEecCCCCCCCCCccChhhhhhhhhhccccccCCceEEcCCCceEEcCHHHHHHHHHHHHHhhhc-cEEEEeCCC
Confidence 99999999888999999999999999999997 9999999999668999999999999999999999864 899999999
Q ss_pred CCHHHHHHHHHHHH-HcCCCcccCCCCcchhh-hh----hhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHH
Q 004627 384 SDAESMMALKDFLN-RMGSNNVWCEGTGAQSN-AD----LRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKT 457 (741)
Q Consensus 384 ~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~-~~----~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a 457 (741)
.++|+++++++|++ .+|++|+++..+..... .. +......+.++.||++||+||+||+||.+++|+++.|++++
T Consensus 322 ~t~Ee~y~~~kl~r~~lgt~nid~~~r~~~~~~~~~~~~~~~g~~~~~~~~Die~ad~ill~G~N~~~~~P~~~~ri~~a 401 (797)
T PRK07860 322 LTVEDAYAYAKFARVALGTNDIDFRARPHSAEEADFLAARVAGRGLGVTYADLEKAPAVLLVGFEPEEESPIVFLRLRKA 401 (797)
T ss_pred CCHHHHHHHHHHHHHhcCCCccccccccccchHHHHHHhhccCCCCCCCHHHHHhCCEEEEEeCChhhhhHHHHHHHHHH
Confidence 89999999999998 79999998766532111 11 11111224678999999999999999999999999999998
Q ss_pred HHhCCCEEEEEccCCCCCc-ccc------ccCCCHHHHHHHHcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHH
Q 004627 458 VRANNAKVGYIGPATDLNY-DHQ------HLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVE 530 (741)
Q Consensus 458 ~~~~gakiivIdp~~~~t~-~~~------~lG~d~~~l~~i~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~ 530 (741)
.+++|+|||+|||+.+.++ ..+ .+|+|...+.+++..+.++++.|+++ ++++++|.++.++.+. ..++.
T Consensus 402 ~k~~GakiivIDPr~t~t~a~~Ad~~l~irPGtD~all~al~~~i~~~a~~l~~~-~~~i~~g~~v~~~~~~---~~a~~ 477 (797)
T PRK07860 402 ARKHGLKVYSIAPFATRGLEKMGGTLLRTAPGGEAAALDALATGAPDVAELLRTP-GAVILVGERLATVPGA---LSAAA 477 (797)
T ss_pred HHhCCCEEEEECCCCchhhhhhhhceeccCCCcHHHHHHHHHHHHHHHHHHHccC-CCEEEEchhhccChhH---HHHHH
Confidence 7779999999999998864 332 25999999988887777889999875 5788999999887653 66788
Q ss_pred HHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCCCC-------------------------------C-------CCcc
Q 004627 531 AIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPES-------------------------------S-------NSIE 572 (741)
Q Consensus 531 ~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p~~-------------------------------~-------~~~~ 572 (741)
+|+.++|+. +..+....|.+|+.++|..|.. + ...+
T Consensus 478 ~la~~~g~~------~~~~~~~~n~~G~~~~G~~~~~lpG~~~~~~~~~~~~~~~~w~~~~~p~~~G~~~~ei~~~~~~G 551 (797)
T PRK07860 478 RLADATGAR------LAWVPRRAGERGALEAGALPTLLPGGRPVADPAARAEVAAAWGVDELPAAPGRDTAGILAAAAAG 551 (797)
T ss_pred HHHHHhCCc------cccccchhhhhhhHhhcCCCCcCccccccCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHhcC
Confidence 899888762 2223344556666666543210 0 0357
Q ss_pred CceEEEEeccCccC-------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCC
Q 004627 573 SAKFVYLMGADDVD-------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGD 645 (741)
Q Consensus 573 ~ik~l~l~g~np~~-------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~ge 645 (741)
+||++|++|.||.+ .++|++++|+|++|+|+|+|+++||||||+++|+|++|||+|.||++|.++++++| ++
T Consensus 552 ~Ikal~v~g~np~s~p~~~~v~~aL~~ldflVv~D~f~teTa~~ADVVLPaa~~~Ek~Gt~tN~e~rvq~~~kav~p-~~ 630 (797)
T PRK07860 552 ELGALLVGGVEPADLPDPAAALAALDAAGFVVSLELRHSAVTERADVVLPVAPVAEKAGTFLNWEGRLRPFEAALRT-TG 630 (797)
T ss_pred CCcEEEEeCcChhhCCCHHHHHHHHhcCCeEEEecccCchhHhhCCEEeecCcccccCCceEccCCceEeeccCCCC-CC
Confidence 89999999999953 45789999999999999999999999999999999999999999999999999996 68
Q ss_pred CccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCCCCCCCCCccccccccCCCCcc-cccccccccchh
Q 004627 646 ARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFG-SAVENFYMTDSI 724 (741)
Q Consensus 646 ar~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fY~~d~i 724 (741)
+|+||+||.+||++||.+++|.+++++++++.+..|..- ...+..... .... .......|. ....-+|.|+.+
T Consensus 631 ar~Dw~Il~~La~~lg~~~~~~~~~~i~~ei~~~~~~~g---~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~tg~~ 704 (797)
T PRK07860 631 ALSDLRVLDALADEMGVDLGLPTVAAARAELARLGAWDG---ARAAAPAVP--AAAP-PQPGAGEAVLATWRMLLDDGRL 704 (797)
T ss_pred CchHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCcccc---ccCCCCCCC--CCCC-CCCCCCcEEecccceEEecCch
Confidence 999999999999999999999999999999998876321 001100000 0000 000112222 222457888999
Q ss_pred hhccHHHHHH
Q 004627 725 TRASKTMAQC 734 (741)
Q Consensus 725 ~r~s~~m~~c 734 (741)
+|+|+.+++.
T Consensus 705 ~~~~~~L~~~ 714 (797)
T PRK07860 705 QDGEPHLAGT 714 (797)
T ss_pred hccChhhhhc
Confidence 9999998874
No 6
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=6.8e-124 Score=1115.88 Aligned_cols=650 Identities=38% Similarity=0.635 Sum_probs=567.9
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhHH
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAK 148 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~~ 148 (741)
||+|+|||++|++++|+|||+||+++||+||+||||+++++.|+||+|+|||+|.+++++||.|+|.+||+|.|++++++
T Consensus 1 m~~~~idg~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~t~~~~~~ 80 (776)
T PRK09129 1 MVEIEIDGKKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVFTRSEKAL 80 (776)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEEcCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhc
Q 004627 149 KAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVA 228 (741)
Q Consensus 149 ~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~ 228 (741)
++|+.+||+||.|||+|||+|||+|||+|||+++.||++.+||.+.|+..+++..+|+|.+|++|||+||||||+|.|++
T Consensus 81 ~~r~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~ev~ 160 (776)
T PRK09129 81 KAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIA 160 (776)
T ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeecccccccCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999888877777789999999999999999999999999
Q ss_pred CcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCceEeeeCCEE
Q 004627 229 GVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEV 308 (741)
Q Consensus 229 g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v~vrdg~V 308 (741)
|..+|++.+||.+++|.++.+.+++|.+||+|+++||||||++|+|+|++|+|+++.++|+|++|+.||+|.++++||+|
T Consensus 161 g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~~gC~i~v~v~~g~i 240 (776)
T PRK09129 161 GVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSLGSNLVVHVKNNRV 240 (776)
T ss_pred CCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCccccccccccccCCCcccccCCccCCCCCCCCCeEEEEECCEE
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcC----CCcEEEEECCC
Q 004627 309 MRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAGRL 383 (741)
Q Consensus 309 ~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~----~~~i~~~~g~~ 383 (741)
+||+|++++|+|+|++|+||+++++.+| |+||++||+|+ +|+|++|||||||+++|++|++++ +++|+++.|+.
T Consensus 241 ~rv~g~~~~p~n~G~lC~kG~~~~~~l~~pdRl~~Pl~R~-~g~~~~iSWdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~ 319 (776)
T PRK09129 241 MRVVPRENEAVNECWISDRDRFSYEGLNSEDRLTKPMIKQ-GGQWKEVDWETALEYVAEGLKGIIEDHGADQIGALASPH 319 (776)
T ss_pred EEeecCCCCCCCccccCccccccccccccccccCCCeEec-CCceEEcCHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCC
Confidence 9999999999999999999999999998 99999999998 889999999999999999999875 57899999988
Q ss_pred CCHHHHHHHHHHHHHcCCCcccCCCCcchh---hhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHh
Q 004627 384 SDAESMMALKDFLNRMGSNNVWCEGTGAQS---NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRA 460 (741)
Q Consensus 384 ~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~---~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~ 460 (741)
.++|+.+++++|++.+|++|+++....+.. ...++. ..++.++.|+++||+||+||+||.+++|++..+++++. +
T Consensus 320 ~t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~~~~~~g~-~~~~~~~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~-~ 397 (776)
T PRK09129 320 STLEELYLLQKLARGLGSGNIDHRLRQQDFRDDAAAPGA-PWLGMPIAELSNLDAVLVVGSNLRKEHPLLAARLRQAA-K 397 (776)
T ss_pred CCHHHHHHHHHHHHHhCCCccccccCCccccchhhhhcc-cccCCCHHHHHhCCEEEEEecCcchhcHHHHHHHHHHH-H
Confidence 899999999999999999998765443321 111221 23456889999999999999999999999999999986 5
Q ss_pred CCCEEEEEccCCCCCccccccCCC-------------------------HHHHHHHH--cCHHHHHHHHhcCCCcEEEEc
Q 004627 461 NNAKVGYIGPATDLNYDHQHLGTG-------------------------PKTLLEIA--EGRHPFFSAISNAKNPVIIVG 513 (741)
Q Consensus 461 ~gakiivIdp~~~~t~~~~~lG~d-------------------------~~~l~~i~--~gi~~lA~~l~~a~~~~Ii~G 513 (741)
+|+||++|||+.+.++.....|.+ ++++++++ +.|+++|+.|+++++++|++|
T Consensus 398 ~G~klividpr~t~~~~~~~~~~~~~p~~~~~~la~l~~~i~~~~~~~~~e~~~~it~~~~I~~~A~~l~~a~~~~i~~G 477 (776)
T PRK09129 398 NGAKLSAINPVDDDFLFPVAQRIIVAPSAWADALAGVAAAVAAAKGVALPEALAKVLAAAAARAIAQSLANGERAAILLG 477 (776)
T ss_pred CCCeEEEecCCccccccccccCccCChHHHHHHHHHHHHHHHHhhcccChHHhhccCcHHHHHHHHHHHhcCCCeEEEEC
Confidence 899999999998876533333321 12222221 237899999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCCCCC------CCccCceEEEEeccCccC-
Q 004627 514 AGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS------NSIESAKFVYLMGADDVD- 586 (741)
Q Consensus 514 ~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p~~~------~~~~~ik~l~l~g~np~~- 586 (741)
.++.++.+|.++.+++..|+.++|+ +++.+.+..|..|+.++|..|... ...+++|++|++|+||+.
T Consensus 478 ~g~~~~~~g~~~~~~i~~L~~ltG~------~~~~l~~~~n~~g~~~~g~~p~~~g~~~~~il~g~ikal~v~g~Np~~s 551 (776)
T PRK09129 478 NLAVNHPQAATLRALAQWIAKLTGA------TLGFLTEAANSVGAHLAGALPGKGGLNAAAMLAQPRKAYLLLNVEPELD 551 (776)
T ss_pred cccccCCCHHHHHHHHHHHHHHHCC------CEEccCcchHHHHHHHhCCCCCCcccCHHHHhCCCcCEEEEeCCCcccc
Confidence 9999999999999999999999986 234556677888888888877421 135789999999999953
Q ss_pred -------ccCCCCCCeEEEEcccCCccc-cccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHH
Q 004627 587 -------LEKLPNDAFVVYQGHHGDHGV-YRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSE 658 (741)
Q Consensus 587 -------~~al~k~~fvV~~d~~~~eta-~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~ 658 (741)
.++|++++|+|++|.|+|+|+ ++||||||+++|+|++|+++|.+|++|..+|+|+|+||+|+||+||.+||+
T Consensus 552 ~p~~~~~~~aL~kl~f~Vv~d~f~teTa~~~ADvVLPaa~~~E~~g~~~~~~g~~~~~~~~v~P~gear~d~~Il~~LA~ 631 (776)
T PRK09129 552 CADPAQARAALNQAEFVVALSAFASKATLDYADVLLPIAPFTETSGTFVNAEGRVQSFKGVVRPLGEARPAWKVLRVLGN 631 (776)
T ss_pred ccCHHHHHHHHhcCCeEEEEeeecCcchhhcCCEEEcCCCcccCCceEECCCCceEEeccccCCCccchhHHHHHHHHHH
Confidence 467899999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HhCCC-CCCCCHHHHHHHHHHhCCCCCCccccCCCCC-CCCCccccccccCCCCcc-cccccccccchhhhccHHHHHHH
Q 004627 659 VAGMR-LPYDTIGGIRSRIRTVAPNLLHVDEREPATL-GPSLKPEIKSEMDLTPFG-SAVENFYMTDSITRASKTMAQCS 735 (741)
Q Consensus 659 ~lg~~-~~y~~~~~v~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~fY~~d~i~r~s~~m~~c~ 735 (741)
+||.+ ++|.+.+++++++.+..+. |+.+..... .....+ ..+..+. .....+|.+++.++++..++.+.
T Consensus 632 ~lG~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~~~~~~~~~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 703 (776)
T PRK09129 632 LLGLPGFDYESSEEVRAEALGAGAL---ASRLSNATSAARAAPA-----AASGGLERVADVPIYRTDALVRRAEPLQLTA 703 (776)
T ss_pred HhCCCCCCCCCHHHHHHHHHHhCCc---hhhcccccccCCCCCC-----CCCCceeeechhhhccCCchhccChhhhhcc
Confidence 99984 7899999999999776652 444443210 000111 0111222 11256889999999888888764
No 7
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=3.9e-117 Score=1064.72 Aligned_cols=603 Identities=29% Similarity=0.467 Sum_probs=523.6
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-----CCCcccccccCCCCCCCEEEcc
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-----KSPKPVASCAMPALPGMKIKTD 143 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-----~~~~~~~aC~~~v~~gm~v~t~ 143 (741)
|++|+|||+++++++|+|||+|++++||+||++|||++++++|+||+|+|+|. +.+++++||+|+|.+||+|.|+
T Consensus 1 ~~~i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~gm~v~t~ 80 (847)
T PRK08166 1 MATIHVDGKEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDGTFISID 80 (847)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCCCEEEeC
Confidence 48999999999999999999999999999999999999999999999999993 4467899999999999999999
Q ss_pred chhHHHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHH
Q 004627 144 TPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRF 223 (741)
Q Consensus 144 ~~~~~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~ 223 (741)
+++++++|+.+|||||+|||+|||+|||+|||+|||+++.||...+||.+.|+.+++++.+|+|.+|++|||+|+||||+
T Consensus 81 ~~~~~~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rCi~C~rCVr~ 160 (847)
T PRK08166 81 DPEAKAFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY 160 (847)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999988888887778999999999999999999999
Q ss_pred hhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccccccc-ccccceeeeeecCCCCCCCCCceEe
Q 004627 224 ATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFK-ARNWELKGTETIDVTDAVGSNIRID 302 (741)
Q Consensus 224 C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~-~r~wel~~~~siC~~C~~gC~i~v~ 302 (741)
|.|++|..+|++.+|+.+..|+.+.+..++|++||+|+++||||||++|++.|+ +|+|+++.++|+|++|+.||+|.++
T Consensus 161 c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~~~~~~~r~w~l~~~~s~C~~C~~gC~i~v~ 240 (847)
T PRK08166 161 YKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKTHSERYNRKWDMQFAPSICQHCSVGCNISPG 240 (847)
T ss_pred HHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccccccccCCCceeeEEEeeCCCCcCCCCeEEE
Confidence 999999999999999999999988888889999999999999999999999999 9999999999999999999999999
Q ss_pred eeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEEC
Q 004627 303 SRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAG 381 (741)
Q Consensus 303 vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g 381 (741)
++||+|+||+|++++++|++|+|+||||+++.+| ++||++||+|. +|+|++|||||||+.||++|++++. ...+.+
T Consensus 241 ~~~g~i~rv~~~~~~~~n~g~lC~kGr~~~~~~~~~dRl~~Pl~R~-~g~~~~isWdeAl~~ia~~l~~~~~--~~G~~s 317 (847)
T PRK08166 241 ERYGELRRIENRYNGAVNGYFLCDRGRFGYGYVNLKDRPRQPLQRR-GDDFITLNADQALQGAADILRQAKK--VIGIGS 317 (847)
T ss_pred eeCCEEEEEECCCCCCccCCcCCHHHHhhhhhccccccCCcceeec-CCceeEeCHHHHHHHHHHHHHhhcc--eEEEEC
Confidence 9999999999999999999999999999999998 99999999998 7899999999999999999999853 334777
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcccCCCCcc----h--hhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHH
Q 004627 382 RLSDAESMMALKDFLNRMGSNNVWCEGTGA----Q--SNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIR 455 (741)
Q Consensus 382 ~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~----~--~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr 455 (741)
+..++|+.+++++| +|++|++.....+ . ....++.....+.++.|+++||+||+||+|+.+++|+++.+++
T Consensus 318 ~~~t~e~~~~l~k~---~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ilv~G~N~~~~~p~~~~~i~ 394 (847)
T PRK08166 318 PRASLESNFALREL---VGAENFYTGIAAGEQERLQLALKVLREGGIYTPSLREIESYDAVLVLGEDLTQTAARVALAVR 394 (847)
T ss_pred CCcchHHHHHHHHH---hCCCCcccccChHHhhhhhHHHHHhhcCCCCCCCHHHHHhCCEEEEEeCChHHhhHHHHHHHH
Confidence 88889999888877 7998886544221 1 1112332223455789999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEccCCC--------------------------CCccccc------cCCCHHHHHHHH-----------
Q 004627 456 KTVRANNAKVGYIGPATD--------------------------LNYDHQH------LGTGPKTLLEIA----------- 492 (741)
Q Consensus 456 ~a~~~~gakiivIdp~~~--------------------------~t~~~~~------lG~d~~~l~~i~----------- 492 (741)
++++ +|+|+++|||+.+ .++..++ .|++...+..++
T Consensus 395 ~a~~-~gaklividpr~~~~~~~~~~~~g~~~~~~l~vv~~~~t~~a~~Ad~~l~~~pg~~~~l~~al~~~~~~~~~~~~ 473 (847)
T PRK08166 395 QAVK-GKAREMAAAQKVADWQIAAVRNIGQRAKSPLFITNVDETRLDDIAAWTYRAPPEDQARLGFAIAHALDNSAPAVD 473 (847)
T ss_pred HHHH-cCCceEeeccccccchhhhhhhcccccCcceEEecCchhhHHHHHhhhhcCCchhHHHHHHHHHhhhhhhcchhc
Confidence 9975 8999999999732 1222222 244433332221
Q ss_pred -------cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCC
Q 004627 493 -------EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVP 565 (741)
Q Consensus 493 -------~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p 565 (741)
+.|+++|+.|+++++++|++|.++... .....+.+|+.++|..+++| |++++.+.+|..|+.++|..+
T Consensus 474 ~~~~~~~~~i~~~A~~la~a~~~~I~~G~g~~~~----~~~~~~~~l~~~l~~~g~~g-G~~~l~~~~n~~G~~~~g~~~ 548 (847)
T PRK08166 474 GLDPELQAKADVIAQALAGAKKPLIISGTSAGSP----AIIEAAANVAKALKGRGADV-GITLVAPEANSMGLALLGGGS 548 (847)
T ss_pred cCccchhHHHHHHHHHHhcCCCcEEEEeCcccCh----HHHHHHHHHHHHHhccCCCc-eEEEeccchhHHHHHHhcCCC
Confidence 148899999999999999999997532 23444555656665556654 678888888888888877543
Q ss_pred CCC----CCccCceEEEEeccCccC-------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeE
Q 004627 566 ESS----NSIESAKFVYLMGADDVD-------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQ 634 (741)
Q Consensus 566 ~~~----~~~~~ik~l~l~g~np~~-------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq 634 (741)
... ...+++|++|++|+||+. .++|.+++|+|++|+|+|+|+++||||||+++|+|++|+|+|.+|++|
T Consensus 549 ~~~l~~~i~~g~ikal~v~g~np~~~~~~~~~~~aL~~~dflVv~d~f~teTA~~ADvVLPaa~~~E~~Gt~~n~egr~q 628 (847)
T PRK08166 549 LEEALEELESGRADAVIVLENDLYRHAPAARVDAALAKAPLVIVLDHQRTATMEKAHLVLPAASFAESDGTLVNNEGRAQ 628 (847)
T ss_pred HHHHHHHHHcCCCCEEEEeCCCcccCcCHHHHHHHHhcCCEEEEEccccCCccccCCEEeccCcccccCceEECcCCcce
Confidence 211 146789999999999853 357899999999999999999999999999999999999999999999
Q ss_pred eeccccCCCC-----CCccHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHhCCCC
Q 004627 635 QTLPAVPTVG-----DARDDWKIIRALSEVAGM-RLPYDTIGGIRSRIRTVAPNL 683 (741)
Q Consensus 635 ~~~~av~P~g-----ear~d~~Il~~La~~lg~-~~~y~~~~~v~~~~~~~~p~~ 683 (741)
.++++++|+| |+|+||+||++||++||. .++|++.+++++++.+..|.+
T Consensus 629 ~~~~~v~p~g~~~~~e~r~dw~I~~~La~~lg~~~~~~~~~~ei~~~~~~~~~~~ 683 (847)
T PRK08166 629 RFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDALAAAIPQL 683 (847)
T ss_pred eecceecCCCccccccccCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCccc
Confidence 9999999999 999999999999999997 478999999999998766644
No 8
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=100.00 E-value=3.6e-118 Score=1011.73 Aligned_cols=666 Identities=44% Similarity=0.735 Sum_probs=580.7
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhHH
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAK 148 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~~ 148 (741)
|++|+|||++|++++|+||||||+.+||+||+||||++|+++|+||||+|||+|.+|+++||.|||++||+|.|++++++
T Consensus 1 m~tI~IDG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~~vk 80 (693)
T COG1034 1 MVTITIDGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSEEVK 80 (693)
T ss_pred CeEEEECCEEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhc
Q 004627 149 KAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVA 228 (741)
Q Consensus 149 ~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~ 228 (741)
++|+++|||||+|||||||+|||+|||+|||+++.||.+.+||.+.||.+++++.+|++.+||+|||+|+||||||.|++
T Consensus 81 ~~R~~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~dm~RCI~C~RCVR~c~eia 160 (693)
T COG1034 81 KAREGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYDMNRCILCTRCVRFCKEIA 160 (693)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCcccccccccccccccccchhhcccccceechhhHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCceEeeeCCEE
Q 004627 229 GVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEV 308 (741)
Q Consensus 229 g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v~vrdg~V 308 (741)
|..++++.+||.+.+|+++.+.++.+++|||||++||||||++|+|+|.+|+||+++++|+|++|++||+|.+++|.+++
T Consensus 161 G~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~~~~ar~wEl~k~~si~~~~a~g~~i~~d~r~~ev 240 (693)
T COG1034 161 GTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPFAFTARKWELKKTPSICVHCAVGCNIRVDERYGEV 240 (693)
T ss_pred CccccceeecCCCceeecccccccccccccceeeeccccccccChHHhhhccchhccCceeeccCccccceeecccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCccccccccccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCCCCHHH
Q 004627 309 MRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAES 388 (741)
Q Consensus 309 ~rI~p~~~~~~n~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~ 388 (741)
+|++++.+..+|+.|+|+||||+|++++.+|+.+|++|. +|+|++++|.+|+..++..+..+.++++..++++..+.|+
T Consensus 241 ~ri~~r~n~~vNe~~~~d~~RF~~d~~~~~~~~~p~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~E~ 319 (693)
T COG1034 241 RRILPRYNEVVNEEWLCDKGRFAYDGLNLQRLDRPKIRV-GGRLVEASWLEANEAIAQALALIKPEKVGAIASPRASVEE 319 (693)
T ss_pred hhhcccchhHHHHHHhcccccccccccccchhcccchhc-CCeeeecChHHHHHHHHHHHhhhcccccceeechhhhHHH
Confidence 999999999999999999999999999966699999999 7799999999999999999999888899999999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCcchhh-hhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEE
Q 004627 389 MMALKDFLNRMGSNNVWCEGTGAQSN-ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGY 467 (741)
Q Consensus 389 ~~~~~~l~~~lGs~~~~~~~~~~~~~-~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiiv 467 (741)
++++++|+..+|+.++++........ ...+..+.++.++.+++++|.++++|.|++.++|+++.|++++.+..+..+.+
T Consensus 320 ~~alk~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ie~~d~~l~ig~~~~~~~~~l~~~ir~~~~~~~~~~~~ 399 (693)
T COG1034 320 LFALKELAGELGSSNIDHRQEDARLDPKVARAGYLYNPTIAEIESADAVLVIGANLRQEAPVLALRIRKAVKGKGLPVAV 399 (693)
T ss_pred HHHHHHHHHHhccCCccccchhhhcchhhhcccccccccHhHHHhCchhhccCCCccccchhHHHHHHHHhhccCcceee
Confidence 99999999999999998862211111 22234456678899999999999999999999999999999999878889999
Q ss_pred EccCCCCCccc---cccCCCHHHHHHHHcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCc
Q 004627 468 IGPATDLNYDH---QHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWN 544 (741)
Q Consensus 468 Idp~~~~t~~~---~~lG~d~~~l~~i~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~ 544 (741)
++......+.. ...|.....+.++..+.....+.+..+.+..++.|.++..+..+..+..+...++..+|.....|+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~~~~~~ 479 (693)
T COG1034 400 IGGVAEWLYALLLSILLGAGIALLDELALGAEAATAAVKKAERELIEKGKGALAGAKKAAILALAEKLADELGAAEARWN 479 (693)
T ss_pred ccchhHHHHHHHhhhhccCCceeeehhhcchhHHHHHHHhccccceeecceeeccCCcceeeehhHHhhhhhhhhhhccc
Confidence 98876655444 223444444444444445556777788888899998888888888888888888887777665666
Q ss_pred ceeecCchhhhhhhhhcCCCCCCCC-------CccCceEEEEeccCccCccCCCCCCeEEEEcccCCccccccceeccCC
Q 004627 545 GLNVLLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPAS 617 (741)
Q Consensus 545 g~~~l~~~~~~~g~~~~g~~p~~~~-------~~~~ik~l~l~g~np~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a 617 (741)
+ ..++..++..+++++++.|.... .....+++++++..+....+..+..|||+++++.+.++..||||||++
T Consensus 480 ~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~a~vilp~a 558 (693)
T COG1034 480 G-VVLHEAASRVNALGLGFLPGLSGEDAALMLGPADANALLLLGIDEEADEADEHAKFVVYSDHHGDAGAEVADVVLPAA 558 (693)
T ss_pred c-chhhHHHHhhccccccccccccchhHHhhccchhhceeeeeccchhhhhhccCCCEEEEeccccccccchhheecccc
Confidence 6 66677777888888887764321 235688999999887544455557899999999999999999999999
Q ss_pred CCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCCCCCCCC
Q 004627 618 AFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPS 697 (741)
Q Consensus 618 ~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~~~~~~l~~~~~~~~ 697 (741)
++.|++|||+|.|||+|.+++++.|+++.++||.+++.|+..||..++|++.+.++..+....|.+...++.....+...
T Consensus 559 ~~~e~~Gt~vN~eGR~q~~~~a~~~~~~~~~~w~~l~~L~~~lg~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (693)
T COG1034 559 SFTEKSGTYVNLEGRVQRFNQALRPGGDEREDWRVLHALASELGLKLDFDQLDAVRAALAAAHPGFALIDSAAKGEREPP 638 (693)
T ss_pred ccccccceEEeeccccccccccccCcccchHHHHHHHHhHHHhCCCCCCchHHHHHHHHHHhccchhhhhhhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999888888766654333332211
Q ss_pred Ccc---c-cccccCCCCcccccccccccchhhhccHHHHHHHHHH
Q 004627 698 LKP---E-IKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAML 738 (741)
Q Consensus 698 ~~~---~-~~~~~~~~~~~~~~~~fY~~d~i~r~s~~m~~c~~~~ 738 (741)
... . ........+++... ||+++++.|+|+.|++|....
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~ 681 (693)
T COG1034 639 AGEGILANRANISVAEPLQPQD--FYLAMPGARNSPQAAKKLQLE 681 (693)
T ss_pred cccchhcccccccccccCCccc--hhhhccccccCHHHHHhhhhh
Confidence 100 0 00111222232222 999999999999999999865
No 9
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=100.00 E-value=9.7e-92 Score=817.92 Aligned_cols=537 Identities=22% Similarity=0.364 Sum_probs=441.8
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhHH
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAK 148 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~~ 148 (741)
+|+|+|||+++++++|+|||+||+++||+||++|||+++++.|+||+|+|+|+|.+ ++||.|+|++||+|.|+++++.
T Consensus 1 mv~i~IdG~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~--~~AC~t~v~dGM~V~T~s~~v~ 78 (819)
T PRK08493 1 MITITINGKECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADGKR--VYSCNTKAKEGMNILTNTPNLM 78 (819)
T ss_pred CeEEEECCEEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECCEE--eccccCCCCCCCEEEecCHHHH
Confidence 38999999999999999999999999999999999999999999999999999954 8899999999999999999999
Q ss_pred HHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhc
Q 004627 149 KAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVA 228 (741)
Q Consensus 149 ~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~ 228 (741)
+.|+.+||+||.|||+||++||++|||+||++++.||+..+||...++..++. ..|+|.+|++|||+|+||||+|++++
T Consensus 79 ~~Rk~vle~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~~~-~~~~I~~D~~rCI~C~RCVr~C~ev~ 157 (819)
T PRK08493 79 DERNAIMQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKPHK-HWGKINYDPSLCIVCERCVTVCKDKI 157 (819)
T ss_pred HHHHHHHHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCcccccccccc-CCCcEEechhhcccccHHHhhCcccc
Confidence 99999999999999999999999999999999999999999997654433333 34899999999999999999999999
Q ss_pred CcceeeeecCCCCce-----------------------eeecccCCccccccccccccccCcccccccccccccccceee
Q 004627 229 GVQDLGMLGRGSGEE-----------------------IGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKG 285 (741)
Q Consensus 229 g~~~l~~~~r~~~~~-----------------------i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~ 285 (741)
|..+|++.+||.+.. |.+..+...+|.+||+|+++||||||+++++.|+.|+|++++
T Consensus 158 g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~VCPvGAL~~k~~~~~~~~wel~~ 237 (819)
T PRK08493 158 GESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSDFQYTSNAWELKK 237 (819)
T ss_pred cchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHHHhCCCCccccCccccccCcccccc
Confidence 999999999998744 334444457899999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCceEeeeCCEEEEEcCC---CCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHH
Q 004627 286 TETIDVTDAVGSNIRIDSRGPEVMRILPR---LNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDAL 361 (741)
Q Consensus 286 ~~siC~~C~~gC~i~v~vrdg~V~rI~p~---~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl 361 (741)
++|+|++|++||+|.+++++|+|+++.+. ...+.|+||+|+||||+|+.++ ++|. +.+||+|+
T Consensus 238 v~TvCp~CsvGC~l~v~vk~~~i~~~~~ki~rV~~~~N~G~LC~KGRfg~d~~~~~dR~-------------e~A~deA~ 304 (819)
T PRK08493 238 IPATCPHCSDCCLIYYDVKHSSILNQESKIYRVSNDFYFNPLCGAGRFAFDFQNEADKD-------------EKAFKEAV 304 (819)
T ss_pred ccCcCCCCccCCCeEEEccCCeEecccCccccccCCCCCcccCcccccccccccCCcch-------------HHHHHHHH
Confidence 99999999999999999998877665442 2346899999999999999886 6551 56777777
Q ss_pred HHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcch-----hhhhhhcCcccCCCccccccCCEE
Q 004627 362 AVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ-----SNADLRSGYIMNTSISGLEKADCF 436 (741)
Q Consensus 362 ~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~-----~~~~~~~~~~~~~~~~di~~ad~I 436 (741)
+.+. +. ++|++ |+..++|++|++++|++.+|++++++..+.++ +...+|.. ++++++||++||+|
T Consensus 305 e~lk----~~--~aI~~--S~~~TNEE~YllqKLar~lgtnnvD~~aR~~~~~~~~l~~~~G~~--~t~sl~DI~~AD~I 374 (819)
T PRK08493 305 EAFK----EA--KAIKF--NSFITNEEALILQRLKKKFGLKLINEEALKFQQFLKVFSEVSGKS--YSANLEDIKTSDFV 374 (819)
T ss_pred HHHh----hC--CEEEe--cCCCCHHHHHHHHHHHHHhCCCCccchhhhhhHHHHHHHHhcCCC--CCCCHHHHhhCCEE
Confidence 6644 33 45544 77889999999999999999999988776542 22234443 45689999999999
Q ss_pred EEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccc---c------ccCCCHHHH-------------------
Q 004627 437 LLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDH---Q------HLGTGPKTL------------------- 488 (741)
Q Consensus 437 ll~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~---~------~lG~d~~~l------------------- 488 (741)
|+||+|+.+++|+++.||++|.+++|+++++|||+.+.++.. + .+|+|...+
T Consensus 375 lviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii~e~~id~~~~~ 454 (819)
T PRK08493 375 VVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFLEEEAILKSLEE 454 (819)
T ss_pred EEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHHHcccchhhhhh
Confidence 999999999999999999998766899999999998766321 1 124332111
Q ss_pred ------------------------------------------------------HHHH----cCHHHHHHHHhcCCCcEE
Q 004627 489 ------------------------------------------------------LEIA----EGRHPFFSAISNAKNPVI 510 (741)
Q Consensus 489 ------------------------------------------------------~~i~----~gi~~lA~~l~~a~~~~I 510 (741)
++++ +.++++|+.|+++++++|
T Consensus 455 F~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~ee~~~~v~~~v~~~~~~~~~~~a~~~Gv~~e~i~~lA~~~a~a~~~~i 534 (819)
T PRK08493 455 FKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYEKLEALLAKKNNFTL 534 (819)
T ss_pred HHhhhccccccccccccccccccccccccccHHHHHHHhhhhhcccccCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEE
Confidence 1111 115789999999999999
Q ss_pred EEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcc-eeecCchhhhhhhhhcCCCCCCCCCccCceEEEEeccCccCccC
Q 004627 511 IVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNG-LNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEK 589 (741)
Q Consensus 511 i~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g-~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~~~a 589 (741)
++|+|+.+|++| .+|+.++|++++-..+ ++++++..|+.|...+--+ +.+...-+.+|.|
T Consensus 535 i~G~gi~qh~~g-------~NLA~LtG~Igk~s~~~v~~~p~~~N~~G~~~~c~l------~~~~~~~~~~gyn------ 595 (819)
T PRK08493 535 VVGEDLYAHKNA-------KNLAKLLGLIQKYTAFKVILIPPSTNTLGVALICDL------SEEIEGGKTVGYN------ 595 (819)
T ss_pred EEecChhhCccH-------HHHHHHHHhHhhhcCceEEeeCCCccHHHHHHHhcc------cccccCCeeEEec------
Confidence 999999999988 4788899999876554 5788888999886543221 1222345577877
Q ss_pred CCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 004627 590 LPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 666 (741)
Q Consensus 590 l~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y 666 (741)
.+.+|.+... ..+|+.+| +--+++|||+|.+.||..+.+|++--| -.|.++|+.||+...|
T Consensus 596 -~~g~f~~~~~-------~~~~l~~~--~l~qqegt~~~~~~rv~p~~~a~~~~g------y~lndia~~~~~~~~~ 656 (819)
T PRK08493 596 -EKGDFTISSL-------EKGDLALP--ALNQQEGTFTNIDKRVVPTNAALPFEG------YDLNDIANALGFDEEY 656 (819)
T ss_pred -CCCceEeccC-------CcccccCc--chhhcCcceEeecCceecCccccCcCC------eeHHHHHHHhCCChhh
Confidence 3678876542 24799999 566788999999999999999997655 3456678888886544
No 10
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=100.00 E-value=2.5e-68 Score=588.04 Aligned_cols=373 Identities=59% Similarity=0.965 Sum_probs=346.0
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAE 366 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~ 366 (741)
+|+|++|++||+|.+++++|+|+||+|++++++|+||+|+|||+.+++++++||++||+|. +|+|++|||||||+++|+
T Consensus 1 ~si~~~~~~GC~i~v~~~~g~i~ri~~~~~~~~n~g~lC~kgr~~~~~~~~~Rl~~Plir~-~g~~~~isWdeAl~~ia~ 79 (375)
T cd02773 1 ESIDVLDAVGSNIRVDTRGGEVMRILPRLNEDINEEWISDKTRFAYDGLKRQRLDKPYIRK-NGKLKPATWEEALAAIAK 79 (375)
T ss_pred CCcCCCCCCCCceEEEEeCCEEEEEeCCCCCCCCCCeecCcccccccccCccccCCCcEee-CCcEeEcCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999998899999999998 789999999999999999
Q ss_pred HHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEEcCChhhh
Q 004627 367 VMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVE 446 (741)
Q Consensus 367 ~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~ 446 (741)
+|+++++++++++.|+..++|+++++++|++.+|++++++..+.|.....++..+.++.++.||++||+||+||+||.++
T Consensus 80 ~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~N~~~~ 159 (375)
T cd02773 80 ALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTIAGIEEADAVLLVGTNPRFE 159 (375)
T ss_pred HHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCHHHHhhCCEEEEEcCCcchh
Confidence 99999888999999998999999999999999999998887776655455555555667899999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCEEEEEccCCCCCccccccCCCHHHHHHHHcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHH
Q 004627 447 AAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIF 526 (741)
Q Consensus 447 ~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~lG~d~~~l~~i~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~ 526 (741)
+|+++.|++++++++|+||++|||+.+.|+..+++|+|.+.+..+++|..++|+.|+++++++|++|+++.++.++..+.
T Consensus 160 ~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~g~d~~~l~~l~~~~~~~a~~l~~a~~~~ii~g~g~~~~~~~~~~~ 239 (375)
T cd02773 160 APVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHLGTDAKTLQDIASGKHPFSKALKDAKKPMIIVGSGALARKDGAAIL 239 (375)
T ss_pred chHHHHHHHHHHHcCCCEEEEEcCccccchhhccCCCcHHHHHHHHHhHHHHHHHHhcCCCcEEEecchhhccccHHHHH
Confidence 99999999998776799999999999999999999999999999998988999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCCCCCC--CccCceEEEEeccCccCccCCCCCCeEEEEcccCC
Q 004627 527 STVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSN--SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGD 604 (741)
Q Consensus 527 ~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p~~~~--~~~~ik~l~l~g~np~~~~al~k~~fvV~~d~~~~ 604 (741)
+++..|+.++|+++.++.|++.+....|..|+.++|..|.... ..+++|++|++|.||+.....++.+|+|++|+|++
T Consensus 240 ~~i~~l~~~~g~~~~~~~g~~~~~~~~n~~g~~~~g~~~~~~~~~~~g~i~~l~v~g~np~~~~~~~~~~~~v~~d~~~~ 319 (375)
T cd02773 240 AAVAKLAKKNGVVREGWNGFNVLHRAASRVGALDLGFVPGAGAIRKSGPPKVLYLLGADEIDITPIPKDAFVVYQGHHGD 319 (375)
T ss_pred HHHHHHHHHhCCcCCCCceEeecchHHHHHHhhccCCCCCcchhhccCCccEEEEcCCCccccCCCCCCCEEEEECCCCC
Confidence 9999999999999888889999999999999999998886432 24789999999999976444557889999999999
Q ss_pred ccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHh
Q 004627 605 HGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 660 (741)
Q Consensus 605 eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~l 660 (741)
+|+++||||||+++|+|++|+|+|.+|++|.++++++|+||+|+||+|+.+|+++|
T Consensus 320 ~ta~~AdvvLP~~~~~E~~g~~~n~~~~~~~~~~~v~p~~~~~~d~~i~~~l~~~~ 375 (375)
T cd02773 320 RGAQIADVILPGAAYTEKSGTYVNTEGRVQQTRKAVSPPGDAREDWKILRALSEVL 375 (375)
T ss_pred cchhhCcEEecCCCcccCCCeEEcCCCeEEeeccccCCCccchHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999986
No 11
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=100.00 E-value=4.4e-66 Score=561.37 Aligned_cols=362 Identities=34% Similarity=0.548 Sum_probs=319.8
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAE 366 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~ 366 (741)
+|||++|++||+|++++|+|+|+||.|+.++++|++|||+||||+|++++.+||++||+|.++|+|+++||||||+.+++
T Consensus 1 ~SId~~d~~Gcni~v~~r~~~V~Ri~p~~n~~vNe~wicdKgRf~yd~l~~~Rl~~Plir~~g~~~~~~sW~eAl~~ia~ 80 (366)
T cd02774 1 ESIDVLDSLGSNIRVDIKGNEILRILPKINDELNEEWISDKIRFSYDSLKYQRIKTPLLKLSNNSFLEIGWKTAFKFLNK 80 (366)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEecCCCCCCCCceecCCccccccccccccCCCCcEECCCCcEEEcCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998899999999983339999999999999999
Q ss_pred HHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcc--hhhhhhhcCcccCCCccccccCCEEEEEcCChh
Q 004627 367 VMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGA--QSNADLRSGYIMNTSISGLEKADCFLLVGTQPR 444 (741)
Q Consensus 367 ~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~--~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~ 444 (741)
+|+++.++++++++|+..++|+++++++|++.+|+.|++++.... ....++...+.++.++.||++||+||+||+||+
T Consensus 81 ~l~~~~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~die~ad~illiG~n~~ 160 (366)
T cd02774 81 FILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSDLCLLIGSNLR 160 (366)
T ss_pred HHhhcCcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHHHHhhCCEEEEEcCCcc
Confidence 999888889999999999999999999999999999999876543 112233344566789999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccccCCCHHHHHHHHcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHH
Q 004627 445 VEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDA 524 (741)
Q Consensus 445 ~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~lG~d~~~l~~i~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~ 524 (741)
+++|+++.|||++++++|+||++|||+.+.+|+..++|.++..+.++++|.+.+++.|+++++|+|++|.++..++++..
T Consensus 161 ~e~Pvl~~rlrka~~~~~~ki~vi~~~~~~~~~~~~l~~~~~~l~~~l~g~~~~~~~L~~ak~p~Ii~G~~~~~~~~~~~ 240 (366)
T cd02774 161 VESPILNIRLRNRYNKGNKKIFVIGNKFDTTYPSKHIGLSLNTLLKILEGKHLFCKQLKKSKKPLIIIGSSFSLRKNYSF 240 (366)
T ss_pred hhhHHHHHHHHHHHHcCCCEEEEeCCccccCCcHHHHCcCHHHHHHHHhcchHHHHHHhcCCCCEEEEChHHhCCCCHHH
Confidence 99999999999998877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCC-CCCCCCccCceEEEEeccCccCccCCCCCCeEEEEcccC
Q 004627 525 IFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLV-PESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHG 603 (741)
Q Consensus 525 ~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~-p~~~~~~~~ik~l~l~g~np~~~~al~k~~fvV~~d~~~ 603 (741)
+..++..|+..+++ +++.++..+|+ ++++|+. |+.. ...+.+.+|.++.+.+. .+.+..|||||++|.
T Consensus 241 ~~~~~~~l~~~~~~------~~~~l~~~an~--a~~lG~~~~~~~-~~~~~~~l~~~~~~~~~--~l~~~~fviy~g~~~ 309 (366)
T cd02774 241 IISKLKNFSSNNEN------NFNFLNIISNS--LYYLGIKKFNSN-NKKNLSNLYYIKETNFQ--KFNKNNFVIYQGHHF 309 (366)
T ss_pred HHHHHHHHHHhhcC------ceEEeeHHHHH--HHhcCCCCccch-hcccceEEEEcCCchhh--cccCCCEEEEecccC
Confidence 99999999888644 46667666666 8999985 4311 11223445555555332 267788999999999
Q ss_pred CccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHH
Q 004627 604 DHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEV 659 (741)
Q Consensus 604 ~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~ 659 (741)
++++++||||||+++|+|++|||+|+|||+|.+++++.|+|++|+||+||+.|+..
T Consensus 310 ~~~a~~AdviLP~a~~~Ek~gt~vN~EGr~Q~~~~a~~~~g~ar~dw~Il~~L~~~ 365 (366)
T cd02774 310 LNLANNSNLILPSKTFFEKEALYLNLEGILQKTKKILSFKENIKSDDNIIFSLILF 365 (366)
T ss_pred ccchhhCcEEecCCcccccCceEECCCCcceeehhccCCccccCcHhHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999753
No 12
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.3e-64 Score=587.52 Aligned_cols=435 Identities=19% Similarity=0.235 Sum_probs=354.1
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 365 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA 365 (741)
+|+|++|+.||+|.|+++||+|+||+|++++++|+|++|+||++.++.+| |+||++||+|++.|+|++|||||||++||
T Consensus 1 ~t~C~~C~~~C~i~v~v~dg~i~ri~g~~~~p~~~g~lC~kG~~~~~~~y~p~Rl~~Pl~R~~~~~~~~iSWdeAl~~ia 80 (565)
T cd02754 1 KTTCPYCGVGCGVEIGVKDGKVVAVRGDPEHPVNRGRLCIKGLNLHKTLNGPERLTRPLLRRNGGELVPVSWDEALDLIA 80 (565)
T ss_pred CcCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCcCCCCcCchhhccCCcccccCCeEeCCCCCEEEccHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998 99999999999545999999999999999
Q ss_pred HHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHH-HcCCCcccCCCCcchhh------hhhhcCcccCCCccccccCC
Q 004627 366 EVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKAD 434 (741)
Q Consensus 366 ~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad 434 (741)
++|++++ +++|+++.|+..++|+.+++++|++ .+|+++++...+.|... ..+|.. ..+.++.|+++||
T Consensus 81 ~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~-~~~~~~~Di~~ad 159 (565)
T cd02754 81 ERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGAD-GPPGSYDDIEHAD 159 (565)
T ss_pred HHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhccCC-CCCCCHHHHhhCC
Confidence 9999875 5789988888888888888999987 58999998777665222 223322 2245788999999
Q ss_pred EEEEEcCChhhhhhHHHHHHHHHHHhC--CCEEEEEccCCCCCccccc------cCCCHHHH------------------
Q 004627 435 CFLLVGTQPRVEAAMVNARIRKTVRAN--NAKVGYIGPATDLNYDHQH------LGTGPKTL------------------ 488 (741)
Q Consensus 435 ~Ill~G~Np~~~~p~~~~rlr~a~~~~--gakiivIdp~~~~t~~~~~------lG~d~~~l------------------ 488 (741)
+||+||+||.+++|+...+++++++ + |+|||+|||+.+.|+..++ +|+|.+.+
T Consensus 160 ~Il~~G~n~~~s~~~~~~~~~~a~~-~~~G~klividP~~t~ta~~Ad~~l~i~PGtD~al~la~~~~ii~~~~~d~~fv 238 (565)
T cd02754 160 CFFLIGSNMAECHPILFRRLLDRKK-ANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIEEGLIDRDFI 238 (565)
T ss_pred EEEEECCChhhhhhHHHHHHHHHHh-cCCCCEEEEEcCCCCcchHHhCeeeCCCCCccHHHHHHHHHHHHHCCCcCHHHH
Confidence 9999999999999999999998865 5 9999999999999987665 26664322
Q ss_pred ----------------------HHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCC
Q 004627 489 ----------------------LEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPD 542 (741)
Q Consensus 489 ----------------------~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~ 542 (741)
++++ +.|+++|++|+++++++|++|.|+.++.+|.+..+++..|+.++|++|++
T Consensus 239 ~~~t~g~~~~~~~~~~~t~e~~a~itgv~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~l~G~~g~~ 318 (565)
T cd02754 239 DAHTEGFEELKAFVADYTPEKVAEITGVPEADIREAARLFGEARKVMSLWTMGVNQSTQGTAANNAIINLHLATGKIGRP 318 (565)
T ss_pred HHHhccHHHHHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEEeCCccccchhHHHHHHHHHHHHHHhCCCCCC
Confidence 2221 23889999999999999999999999999999999999999999999999
Q ss_pred CcceeecCchhhhhhhhhcCCCC---------------------------------CCC-------CCccCceEEEEecc
Q 004627 543 WNGLNVLLLNAAQAAALDLGLVP---------------------------------ESS-------NSIESAKFVYLMGA 582 (741)
Q Consensus 543 g~g~~~l~~~~~~~g~~~~g~~p---------------------------------~~~-------~~~~~ik~l~l~g~ 582 (741)
|+|+..+.+..|..|..++|..+ +.. ...+++|++|++|+
T Consensus 319 Ggg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~~~~~g~ 398 (565)
T cd02754 319 GSGPFSLTGQPNAMGGREVGGLANLLPGHRSVNNPEHRAEVAKFWGVPEGTIPPKPGLHAVEMFEAIEDGEIKALWVMCT 398 (565)
T ss_pred CCCCCcCCCCCCCCcccccccCCccCCCCcCCCCHHHHHHHHHHhCCCccccCCCCCcCHHHHHHHHhcCCceEEEEeCC
Confidence 98876655544444433322210 100 02568999999999
Q ss_pred CccC--------ccCCCCCCeEEEEcccC-CccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHH
Q 004627 583 DDVD--------LEKLPNDAFVVYQGHHG-DHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKII 653 (741)
Q Consensus 583 np~~--------~~al~k~~fvV~~d~~~-~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il 653 (741)
||+. .++|++++|+|++|+|+ |+|+++||||||+++|+|++|++++.++++|..+|+|+|+||+|+||+|+
T Consensus 399 Np~~~~p~~~~~~~al~k~~fvV~~d~~~~t~ta~~ADivLP~~~~~E~~~~~~~~~~~~~~~~~~i~p~ge~k~d~~i~ 478 (565)
T cd02754 399 NPAVSLPNANRVREALERLEFVVVQDAFADTETAEYADLVLPAASWGEKEGTMTNSERRVSLLRAAVEPPGEARPDWWIL 478 (565)
T ss_pred CccccCcCHHHHHHHHhCCCeEEEEecccCCchhhhccEEecCCccccCCceEEcCCceEEEECCccCCccccCcHHHHH
Confidence 9953 46789999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC--CCCCCHHHHHHHHHHhCCC------CCCccccCCCCCCCCCcc--cc-c-cccCCCCcc--ccccccc
Q 004627 654 RALSEVAGMR--LPYDTIGGIRSRIRTVAPN------LLHVDEREPATLGPSLKP--EI-K-SEMDLTPFG--SAVENFY 719 (741)
Q Consensus 654 ~~La~~lg~~--~~y~~~~~v~~~~~~~~p~------~~~~~~l~~~~~~~~~~~--~~-~-~~~~~~~~~--~~~~~fY 719 (741)
++||++||.+ ++|.+.+++++++.+..|. .++|++|++..+..+... .. + ..+....|. +++.+||
T Consensus 479 ~~La~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~TpsGk~e~~ 558 (565)
T cd02754 479 ADVARRLGFGELFPYTSPEEVFEEYRRLSRGRGADLSGLSYERLRDGGVQWPCPDGPPEGTRRLFEDGRFPTPDGRARFV 558 (565)
T ss_pred HHHHHHhCCCcCCCCCCHHHHHHHHHHhcCCCCCCcCCCCHHHHhCCCccCCCCCCCCCCCceEeCCCCccCCCCcEEEE
Confidence 9999999985 6788999999999876553 258888886332211110 00 0 113322354 6788898
Q ss_pred ccch
Q 004627 720 MTDS 723 (741)
Q Consensus 720 ~~d~ 723 (741)
....
T Consensus 559 ~~~~ 562 (565)
T cd02754 559 AVPY 562 (565)
T ss_pred eeCC
Confidence 7644
No 13
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.5e-64 Score=582.75 Aligned_cols=397 Identities=21% Similarity=0.232 Sum_probs=343.5
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC-CCCeeecCHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-DGRFKAVNWRDALAVV 364 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g-~g~~~~iSWdeAl~~i 364 (741)
.|+|++|++||+|.|+++||+|+||+|+++||+|+|++|+||++.++.++ ++||++||+|.+ +|+|++|||||||++|
T Consensus 1 ~tvC~~C~~gCgi~v~v~dg~iv~veg~~d~pin~G~lC~KG~~~~~~~~s~~RL~~Pl~R~~g~g~~~~iSWdeAld~i 80 (649)
T cd02752 1 RTICPYCSVGCGLIAYVQNGVWVHQEGDPDHPVNRGSLCPKGAALRDFVHSPKRLKYPMYRAPGSGKWEEISWDEALDEI 80 (649)
T ss_pred CccCcCcccCCCeEEEEECCEEEEEEeCCCCCCCCCCcChhHHHHHHhhcCcccccCCEEecCCCCCEEEeCHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999997 999999999973 4899999999999999
Q ss_pred HHHHHhcC----------------CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcch------hhhhhhcCcc
Q 004627 365 AEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ------SNADLRSGYI 422 (741)
Q Consensus 365 A~~Lk~i~----------------~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~------~~~~~~~~~~ 422 (741)
|++|++++ +++|+++.|+..++|+.+++++|++.+|+.++++..+.|. +...||.. .
T Consensus 81 A~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~ar~C~~~tv~~l~~~~G~g-a 159 (649)
T cd02752 81 ARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQARIUHSPTVAGLANTFGRG-A 159 (649)
T ss_pred HHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCCcchhhhHHHHHHHhhcCCC-C
Confidence 99999874 5779999888889999999999999999999998877763 22345543 3
Q ss_pred cCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc------CCCHHHH--------
Q 004627 423 MNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL------GTGPKTL-------- 488 (741)
Q Consensus 423 ~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l------G~d~~~l-------- 488 (741)
+++++.||++||+||+||+|+.+++|+...+++++++++|+||||||||++.|+..+++ |+|.+.+
T Consensus 160 ~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii 239 (649)
T cd02752 160 MTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYII 239 (649)
T ss_pred CCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999998764599999999999999887663 7765543
Q ss_pred -------HHHH----cCHHHHHHHHhcC----CCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchh
Q 004627 489 -------LEIA----EGRHPFFSAISNA----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNA 553 (741)
Q Consensus 489 -------~~i~----~gi~~lA~~l~~a----~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~ 553 (741)
++++ +.|+++|+.|+++ ++++|++|.|+.+|.+|.++++++..|+.++|++|++|+|++.+.++.
T Consensus 240 ~ytpe~v~~itGvp~e~I~~~A~~~a~a~~~~k~~~i~~g~G~tq~~~G~~~ira~~~L~lllGniG~pGgGv~~lrg~~ 319 (649)
T cd02752 240 RYTPEEVEDICGVPKEDFLKVAEMFAATGRPDKPGTILYAMGWTQHTVGSQNIRAMCILQLLLGNIGVAGGGVNALRGHS 319 (649)
T ss_pred hCCHHHHHHHHCcCHHHHHHHHHHHHhccCCCCcEEEEECCcccccccHHHHHHHHHHHHHHhCCCCCCCCccCcCCCcc
Confidence 3333 2378999999998 788999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccc-------------e
Q 004627 554 AQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRAN-------------V 612 (741)
Q Consensus 554 ~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~AD-------------v 612 (741)
|.+|+.++|..+.. ..+ |+.|.||+. .++|+|++|+|++|+|+|||+++|| |
T Consensus 320 NvqGa~d~g~l~~~--lpg-----y~~G~Np~~s~p~~~~~~~Al~kld~lVv~D~f~teTa~~Ad~~~~~~~~~~t~vv 392 (649)
T cd02752 320 NVQGATDLGLLSHN--LPG-----YLGGQNPNSSFPNANKVRRALDKLDWLVVIDPFPTETAAFWKNPGMDPKSIQTEVF 392 (649)
T ss_pred ccccccccccCccc--Ccc-----ccCCcChhhcCCCHHHHHHHHhcCCeEEEEeCCCCHHHHhhcccCCccccccCceE
Confidence 99999888875432 111 223889953 4789999999999999999999999 9
Q ss_pred eccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCC-------C-------CC-----CCHHHHH
Q 004627 613 ILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR-------L-------PY-----DTIGGIR 673 (741)
Q Consensus 613 VLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~-------~-------~y-----~~~~~v~ 673 (741)
|||+++|+|++|+++|.++++|..+++++|+||+|+||+|+.+|+++||.. + +| .++++++
T Consensus 393 vLPaa~~~Ek~Gt~tn~~r~vq~~~kav~P~gear~D~~Il~~La~rlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 472 (649)
T cd02752 393 LLPAACQYEKEGSITNSGRWLQWRYKVVEPPGEAKSDGDILVELAKRLGFLYEKEGGAFPEPITKWNYGYGDEPTPEEIA 472 (649)
T ss_pred EECCCCccccCcceecCCceEEEECCccCCCccCCCHHHHHHHHHHHhCchhhhccCcccccccccccccCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999985 2 33 6899999
Q ss_pred HHHHHhC--CCC--CCccccCC
Q 004627 674 SRIRTVA--PNL--LHVDEREP 691 (741)
Q Consensus 674 ~~~~~~~--p~~--~~~~~l~~ 691 (741)
+++.... +.+ .+|+.+..
T Consensus 473 ~e~~~~~~~~~~~g~~~~~~~~ 494 (649)
T cd02752 473 REINGGALTDGYTGQSPERLKA 494 (649)
T ss_pred HHHhcccCcCCcCCCCHHHHhc
Confidence 9997542 222 35555543
No 14
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=3.3e-64 Score=577.67 Aligned_cols=402 Identities=26% Similarity=0.363 Sum_probs=346.1
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 365 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA 365 (741)
+|+|++|+.||+|.|+++||+|+||+|++++|+|+|++|+||++.++.+| |+||++||+|+ +|+|++|||||||++||
T Consensus 1 ~t~C~~C~~~C~i~v~v~~g~v~ri~g~~~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~-~~~~~~isWdeAl~~ia 79 (512)
T cd02753 1 KTVCPYCGVGCGLELWVKDNKIVGVEPVKGHPVNRGKLCVKGRFGFDFVNSKDRLTKPLIRK-NGKFVEASWDEALSLVA 79 (512)
T ss_pred CccCCCCCCCCCEEEEEECCeEEEeecCCCCCCCCCccccchhhHhhhccCccccCCCEECC-CCCEEEecHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999998 99999999998 68999999999999999
Q ss_pred HHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHHcC-CCcccCCCCcchh------hhhhhcCcccCCCccccccCC
Q 004627 366 EVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMG-SNNVWCEGTGAQS------NADLRSGYIMNTSISGLEKAD 434 (741)
Q Consensus 366 ~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~lG-s~~~~~~~~~~~~------~~~~~~~~~~~~~~~di~~ad 434 (741)
++|++++ +++++++.|+..++|..+++++|++.+| ++++++....|.. ...+|.. ..+.++.|+++||
T Consensus 80 ~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~~-~~~~~~~d~~~ad 158 (512)
T cd02753 80 SRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGSG-AMTNSIADIEEAD 158 (512)
T ss_pred HHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCCC-CCCCCHHHHHhCC
Confidence 9999864 5789999888888888889999998765 4677765555421 1223322 2345789999999
Q ss_pred EEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc------CCCHHHH--------------------
Q 004627 435 CFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL------GTGPKTL-------------------- 488 (741)
Q Consensus 435 ~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l------G~d~~~l-------------------- 488 (741)
+||+||+||..++|++..++++++ ++|+|||+|||+.+.|+..++. |+|...+
T Consensus 159 ~il~~G~n~~~~~~~~~~~i~~a~-~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGtD~al~lal~~~l~~~~~~d~~fv~~ 237 (512)
T cd02753 159 VILVIGSNTTEAHPVIARRIKRAK-RNGAKLIVADPRRTELARFADLHLQLRPGTDVALLNAMAHVIIEEGLYDEEFIEE 237 (512)
T ss_pred EEEEECCChhhhhHHHHHHHHHHH-HCCCeEEEEcCCCccchHhhCeeeCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 999999999999999999999986 5999999999999999877653 6665422
Q ss_pred --------------------HHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCc
Q 004627 489 --------------------LEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWN 544 (741)
Q Consensus 489 --------------------~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~ 544 (741)
++++ +.|+++|+.|+++++++|++|.++.++.+|.+..+++..|++++|+++++|+
T Consensus 238 ~t~gf~~~~~~~~~~t~e~~~~~~gv~~~~i~~lA~~~~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~~~~G~ 317 (512)
T cd02753 238 RTEGFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAILWGMGVTQHSHGTDNVMALSNLALLTGNIGRPGT 317 (512)
T ss_pred HhhhHHHHHHHHHhCCHHHHHHHhCcCHHHHHHHHHHHHhCCCeEEEeCchhhhhhhHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1111 2278999999999999999999999999999999999999999999999998
Q ss_pred ceeecCchhhhhhhhhcCCCCCCCCCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccC
Q 004627 545 GLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPA 616 (741)
Q Consensus 545 g~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~ 616 (741)
|++.+.+..+..|..+++..|.. ..+.+|++|++|.||+. .++|++++|+|++|+++|+|+++||||||+
T Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~i~~l~~~~~Np~~~~p~~~~~~~al~~~~~~V~~d~~~t~ta~~ADvvLP~ 395 (512)
T cd02753 318 GVNPLRGQNNVQGACDMGALPNV--LPGYVKALYIMGENPALSDPNTNHVRKALESLEFLVVQDIFLTETAELADVVLPA 395 (512)
T ss_pred CcCccCCCCCCCCCcccccCCcc--CCceeEEEEEecCChhhcCcCHHHHHHHHhCCCeEEEEecccCcchhhhhEEecC
Confidence 88877766676676666655432 23459999999999952 467889999999999999999999999999
Q ss_pred CCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCC--CCccccCCCC
Q 004627 617 SAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNL--LHVDEREPAT 693 (741)
Q Consensus 617 a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~--~~~~~l~~~~ 693 (741)
++|+|++|++.|.++++|..+|+|+|+||+|+||+|+.+||++||.++.|.+.+++++++.+..|.+ .+|+++....
T Consensus 396 ~~~~E~~~~~~~~~~~~~~~~~~i~p~ge~~~~~~i~~~La~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~ 474 (512)
T cd02753 396 ASFAEKDGTFTNTERRVQRVRKAVEPPGEARPDWEIIQELANRLGYPGFYSHPEEIFDEIARLTPQYAGISYERLERPG 474 (512)
T ss_pred CccCccCeeEECCCCeEEeeccccCCccccCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCcccccCCHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999988999999999987776644 5777777543
No 15
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=5e-63 Score=564.17 Aligned_cols=369 Identities=19% Similarity=0.239 Sum_probs=311.8
Q ss_pred eecCCC-CCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCC--CCeeecCHHHHHH
Q 004627 287 ETIDVT-DAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGAD--GRFKAVNWRDALA 362 (741)
Q Consensus 287 ~siC~~-C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~--g~~~~iSWdeAl~ 362 (741)
.|+|++ |+.||++.|+++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|+|+ |+|++|||||||+
T Consensus 1 ~t~C~~~C~~~C~i~v~v~~g~i~~v~g~~~~p~n~g~lC~kG~~~~~~~~~pdRl~~Pl~R~g~rgg~~~~isWdeAl~ 80 (501)
T cd02766 1 RSVCPLDCPDTCSLLVTVEDGRIVRVEGDPAHPYTRGFICAKGARYVERVYSPDRLLTPLKRVGRKGGQWERISWDEALD 80 (501)
T ss_pred CCcCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCeeCcchhccHhhhcChhhhccceeecCCCCCceEEecHHHHHH
Confidence 478998 99999999999999999999999999999999999999999998 9999999999853 6999999999999
Q ss_pred HHHHHHHhcC----CCcEEEEECCC--CCHHHHHHHHHHHHHcCCCcccCCCCcchh------hhhhhcCcccCCCcccc
Q 004627 363 VVAEVMLQAK----PEEIVGIAGRL--SDAESMMALKDFLNRMGSNNVWCEGTGAQS------NADLRSGYIMNTSISGL 430 (741)
Q Consensus 363 ~iA~~Lk~i~----~~~i~~~~g~~--~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~------~~~~~~~~~~~~~~~di 430 (741)
+||++|++++ +++|+++.+.. ...+.. +.++|++.+|++|++. +.|.. ...+|.. .+.+++|+
T Consensus 81 ~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~-~~~~~~~~~Gs~~~~~--~~c~~~~~~~~~~~~G~~--~~~~~~d~ 155 (501)
T cd02766 81 TIAAKLKEIKAEYGPESILPYSYAGTMGLLQRA-ARGRFFHALGASELRG--TICSGAGIEAQKYDFGAS--LGNDPEDM 155 (501)
T ss_pred HHHHHHHHHHHhhCCcEEEEecccCCccccchH-HHHHHHHhCCCCCCCC--CccHHHHHHHHHhhcCCC--CCCCHHHH
Confidence 9999999886 57888776432 223333 3478999999999764 34422 2233332 24578999
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHH-----------------
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT----------------- 487 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~----------------- 487 (741)
++||+||+||+||.+++|+...++++++ ++|+|||+|||+.+.|+..++ +|+|...
T Consensus 156 ~~ad~il~~G~Np~~s~p~~~~~~~~a~-~~GaklivvDPr~t~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~~~~d~~ 234 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEAR-KRGAKVVVIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFREGLYDRD 234 (501)
T ss_pred hcCCEEEEECCChhhhchhHHHHHHHHH-HCCCEEEEECCCCCccHHHhCeeeccCCCcHHHHHHHHHHHHHHCCCccHH
Confidence 9999999999999999999999999875 599999999999999987665 2555432
Q ss_pred -----------------------HHHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCC
Q 004627 488 -----------------------LLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIR 540 (741)
Q Consensus 488 -----------------------l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~ 540 (741)
+++++ +.|+++|+.|+++++++|++|+|+.++.+|.+..+++..|+.++|+++
T Consensus 235 fv~~~t~gf~~~~~~v~~~t~e~~~~~tgv~~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~g 314 (501)
T cd02766 235 FLARHTEGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQRYRNGGQNVRAIDALPALTGNIG 314 (501)
T ss_pred HHHHhcCCHHHHHHHHhhCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecchhhhccchHHHHHHHHHHHHHhCCCC
Confidence 22222 227899999999999999999999999999999999999999999999
Q ss_pred CCCcceeecCchhhhhhhhhcCCCCCCCCCccCceEEEEeccCccC--------cc-CCCCCCeEEEEcccCCccccccc
Q 004627 541 PDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LE-KLPNDAFVVYQGHHGDHGVYRAN 611 (741)
Q Consensus 541 ~~g~g~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~--------~~-al~k~~fvV~~d~~~~eta~~AD 611 (741)
++|+|+.... ..++||++|++|+||+. .+ +|++++|+|++|.|+|+|+++||
T Consensus 315 ~~G~g~~~~~-------------------~~~~ik~l~~~g~Np~~~~p~~~~~~~a~l~~~~f~Vv~D~~~teTa~~AD 375 (501)
T cd02766 315 VPGGGAFYSN-------------------SGPPVKALWVYNSNPVAQAPDSNKVRKGLAREDLFVVVHDQFMTDTARYAD 375 (501)
T ss_pred CCCCcccCCC-------------------CCCCeeEEEEeCCCHHhhCCCHHHHHHHHhcCCCeEEEEecCcCchHhhcc
Confidence 9987664321 12679999999999952 34 67899999999999999999999
Q ss_pred eeccCCCCCCCCceEEcC-CCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhC
Q 004627 612 VILPASAFSEKEGTYENT-EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRL--PYDTIGGIRSRIRTVA 680 (741)
Q Consensus 612 vVLP~a~~~Ek~gt~~n~-eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~--~y~~~~~v~~~~~~~~ 680 (741)
||||+++|+|++|++++. ++++|.++|+|+|+||+|+||+|+++||++||.+. .+.+.+++++++.+..
T Consensus 376 vVLP~a~~~E~~~~~~~~~~~~~~~~~~~v~p~ge~~~d~~I~~~La~~lg~~~~~~~~~~~~~~~~~~~~~ 447 (501)
T cd02766 376 IVLPATTFLEHEDVYASYWHYYLQYNEPAIPPPGEARSNTEIFRELAKRLGFGEPPFEESDEEWLDQALDGT 447 (501)
T ss_pred EeecccCcccccccccccCcceEEecccccCCCccCcCHHHHHHHHHHHcCCCCcCCCCCHHHHHHHHhccC
Confidence 999999999999999986 57899999999999999999999999999999975 4568999999876544
No 16
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=100.00 E-value=2.2e-62 Score=592.28 Aligned_cols=400 Identities=17% Similarity=0.168 Sum_probs=325.7
Q ss_pred cccccccCcccccccccccc--------cccceeeeeecCCCCCCCCCceEeeeCCEEEEEcCC-------CCCCCCccc
Q 004627 259 NVIDICPVGALTSKPFAFKA--------RNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPR-------LNEDINEEW 323 (741)
Q Consensus 259 ~cv~vCP~gAl~~~~~~~~~--------r~wel~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~-------~~~~~n~g~ 323 (741)
..-.+|||||++ ++|.|++ |+||+..+.|+|++|+.||+|.++|+||+|+||+++ ++++.|++|
T Consensus 25 ~~~~~~pvga~~-~~~~~~~~e~~yr~~~~wd~~~~~t~c~~C~~gC~l~v~V~dG~vvrv~~~~~~p~~~~~~~~~~g~ 103 (912)
T TIGR03479 25 AFGFLKPIQDPL-KAYPYRDWEDLYRKEWTWDKVGRGAHLNNCTGSCAFYVYVKNGIVWREEQSADYPQCNPDIPDYNPR 103 (912)
T ss_pred hhcccccccccc-ccCCCchHHHHhhhhhcccceeccccCCCccCCCCeEEEEECCEEEEEeccccCCCCCCCCCCCCCC
Confidence 477899999999 8888877 999999999999999999999999999999999874 444678899
Q ss_pred cccccccccccCC-CCCCCCcEEeCC---CCCeeecCHHHHHHHHHHHHHhcC----CCcEEEEEC-CCCCHHHHHHHHH
Q 004627 324 ISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAG-RLSDAESMMALKD 394 (741)
Q Consensus 324 iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~~~iSWdeAl~~iA~~Lk~i~----~~~i~~~~g-~~~~~e~~~~~~~ 394 (741)
+|+||++.++.+| |+||++||+|+| +|+|++|||||||++||++|++++ +++|+++.+ +..+.++..+..+
T Consensus 104 ~C~KG~~~~~~~y~p~Rl~~Pl~R~g~RG~G~~~~iSWdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r 183 (912)
T TIGR03479 104 GCQKGACYNNYMYGDDRLKYPLKRVGERGEGKWKRISWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSR 183 (912)
T ss_pred cCccchhhhhhhcCcccccCceeecCCCCCCceEEeCHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHH
Confidence 9999999999998 999999999974 689999999999999999998754 688988765 4456666677889
Q ss_pred HHHHcCCCcccCCCCcc----hhhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEcc
Q 004627 395 FLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGP 470 (741)
Q Consensus 395 l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp 470 (741)
|++.+|+.++++..... +....+|.. ..+.++.|+++||+||+||+||..++|...+++++++ ++|+|||+|||
T Consensus 184 ~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~-~~GaklVvIdP 261 (912)
T TIGR03479 184 FANLIGGVSPDIFDDYGDLYTGAFHTFGKA-HDSATSDDWFNADYIIMWGSNPSVTRIPDAHFLSEAR-YNGARVVSIAP 261 (912)
T ss_pred HHHHcCCCccccccccCCCCCcccceeccC-ccCCchhhhhcCcEEEEecCChHHcCCchHHHHHHHH-hcCCeEEEECC
Confidence 99999998766543321 222334432 2245789999999999999999999999999999986 59999999999
Q ss_pred CCCCCcccccc------CCCH-----------------------------------------------------------
Q 004627 471 ATDLNYDHQHL------GTGP----------------------------------------------------------- 485 (741)
Q Consensus 471 ~~~~t~~~~~l------G~d~----------------------------------------------------------- 485 (741)
+++.|+..++. |+|.
T Consensus 262 r~t~tA~~AD~wlpirPGTD~ALalam~~vIi~e~l~D~~fv~~~T~~p~LV~~d~g~~lr~~d~~~~~~~~~~~v~d~~ 341 (912)
T TIGR03479 262 DYNPSTIHADLWLPVRVGTDAALALGMVQVIIDEKLYDAAFLKEQTDLPLLVRMDTGKFLREADVEAGGSDKVFYIWDSK 341 (912)
T ss_pred CCChhhhhCCeecCCCCCcHHHHHHHHHHHHHHcCcccHHHHHHhCCCceEEEcCCCceeeHHhcCccCCCCceEEEECC
Confidence 99999765541 3332
Q ss_pred -----------------------------------------------------------HHHHHHH----cCHHHHHHHH
Q 004627 486 -----------------------------------------------------------KTLLEIA----EGRHPFFSAI 502 (741)
Q Consensus 486 -----------------------------------------------------------~~l~~i~----~gi~~lA~~l 502 (741)
+++++++ +.|+++|++|
T Consensus 342 ~~~~~~~~~~~g~~~~~~~~~~~~p~l~G~~~v~~~~g~~~~~~t~f~~l~~~~~~yTpe~aa~itGVpae~I~~lAr~~ 421 (912)
T TIGR03479 342 TGKAVKAKGSMGSEDKTLKLDDFDPALEGTFEARLKNGNTIQVRTVFEGLRAELADYTPEKAAAITGVPPSVIRELAREF 421 (912)
T ss_pred CCCcccCCCcccccccccccccCCccccCceeEeccCCCeeeeecHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 2222332 2389999999
Q ss_pred hcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhh---hhhhh--------------hcCC--
Q 004627 503 SNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAA---QAAAL--------------DLGL-- 563 (741)
Q Consensus 503 ~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~---~~g~~--------------~~g~-- 563 (741)
+++++++|++|.|+.++.||.+..+++..|+++||++|++|+|++.+.+..+ ..|.. ..+.
T Consensus 422 a~~~~~~i~~g~G~~~~~~g~~~~rai~~L~~LtGniG~~Ggg~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 501 (912)
T TIGR03479 422 AKAKKASIITGFNSAKWYHGDLMERALFLLLALTGNWGKTGTGDTHYIGQDKNWVLPGVKALAFPTLKAPTRTDEMGVPT 501 (912)
T ss_pred HhcCceEEEeccccccccccHHHHHHHHHHHHHhCCCCCCCCccccccccccccccccccccccccccCCchhhhccCCc
Confidence 9999999999999999999999999999999999999999988765433211 00100 0000
Q ss_pred ---------------CCCCC--------C-----------CccCceEEEEeccCccC--------cc-CCCCCCeEEEEc
Q 004627 564 ---------------VPESS--------N-----------SIESAKFVYLMGADDVD--------LE-KLPNDAFVVYQG 600 (741)
Q Consensus 564 ---------------~p~~~--------~-----------~~~~ik~l~l~g~np~~--------~~-al~k~~fvV~~d 600 (741)
.|+.. + ..++||++|++++||+. .+ .|++++|+|++|
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~p~~p~~~~~ik~l~~~~~Np~~~~~~~~~~~~~~l~kldfiV~~D 581 (912)
T TIGR03479 502 TVWTYYHAGNLKAWTGPGLDETGAYLDESIDKGWMPNYPRDGKDPKVYIVLRGNPFRRAKGAKAVRENLLPKLELIVDIN 581 (912)
T ss_pred cceeeeeccchhhhcCCccccHHHHHHHHHhcCCCccccccCCCCeEEEEeCCCccccCccHHHHHHHHHccCCEEEEec
Confidence 01100 0 11569999999999963 23 478999999999
Q ss_pred ccCCccccccceeccCCCCCCCCc-eEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhC
Q 004627 601 HHGDHGVYRANVILPASAFSEKEG-TYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 661 (741)
Q Consensus 601 ~~~~eta~~ADvVLP~a~~~Ek~g-t~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg 661 (741)
+++|+|++|||||||+++|+|+++ ++++.++++|.++|+|+|+||+|+||+|+++||++||
T Consensus 582 ~~mt~Ta~~ADiVLPaat~~E~~d~~~~~~~~~v~~~~~av~P~geak~D~~I~~~LA~rlg 643 (912)
T TIGR03479 582 FRMDSTAMYADIVLPAAWHYEKHDLRTTSGHRFINFFDRPVKPMGESKTDWQIFALLAKKIQ 643 (912)
T ss_pred cccCCCcccCCEEccCCCcccccCCEeccCCceeEEeccccCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999988 4567788899999999999999999999999999997
No 17
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=100.00 E-value=1.7e-62 Score=589.47 Aligned_cols=396 Identities=17% Similarity=0.200 Sum_probs=336.7
Q ss_pred ceeeeeecCCCCCCCCCceEee-------eCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeC-CCCCe
Q 004627 282 ELKGTETIDVTDAVGSNIRIDS-------RGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-ADGRF 352 (741)
Q Consensus 282 el~~~~siC~~C~~gC~i~v~v-------rdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~-g~g~~ 352 (741)
..+.++|+|++|++||+|.+++ +||+|++|+|+++||+|+|++|+||++.++.+| |+||++||+|. |+|+|
T Consensus 41 ~~~~v~SvC~~C~~gCgl~v~v~~~~~~~~dg~vv~v~g~~~~Pvn~G~lC~KG~~~~~~~~~pdRL~~PL~R~~G~g~~ 120 (1009)
T TIGR01553 41 DAKQTTSVCCYCSVSCGLLVYSSSHTGDNKTNRAIHVEGDPDHPINRGSLCPKGASTWDLVNNERRPANPLYRAPGSDQW 120 (1009)
T ss_pred CceEEeeECCCCcCCCCEEEEEccccccccCCeEEEEECCCCCCCCCCccCHhHHHHHHhhcCCCcccCCEEecCCCCce
Confidence 4578999999999999999999 789999999999999999999999999999997 99999999997 57899
Q ss_pred eecCHHHHHHHHHHHHHhcC----------------CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchh---
Q 004627 353 KAVNWRDALAVVAEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQS--- 413 (741)
Q Consensus 353 ~~iSWdeAl~~iA~~Lk~i~----------------~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~--- 413 (741)
++|||||||++||++|++++ +++++++.|+..++|+.+++++|++.+|++|+++..++|..
T Consensus 121 ~~ISWDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~~~~C~~~~~ 200 (1009)
T TIGR01553 121 EEISWDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQARIUHSPTV 200 (1009)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCcccccccHHH
Confidence 99999999999999999864 36788899988899999999999999999999988887732
Q ss_pred ---hhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc------CCC
Q 004627 414 ---NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL------GTG 484 (741)
Q Consensus 414 ---~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l------G~d 484 (741)
...||... ++.++.|+++||+||+||+||.+++|+...++++++ ++|+|||+||||++.|+..+++ |+|
T Consensus 201 ~al~~~~G~~~-~~~~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak-~~GakiIvIDPR~t~tA~~AD~~l~irPGTD 278 (1009)
T TIGR01553 201 ASLAPSFGRGA-MTNNWVDIKNSDLILVMGGNPAENHPIGFKWAIRAK-KKGAKIIHIDPRFNRTATVADLYAPIRSGSD 278 (1009)
T ss_pred HHHHHhhcCCC-CCCCHHHHHhCCEEEEECCChhhhChHHHHHHHHHH-HcCCEEEEEcCCCCchhHhhccEeCCCCChH
Confidence 23444432 345689999999999999999999999889998886 5999999999999998765441 332
Q ss_pred H-------------------------------------------------------------------------------
Q 004627 485 P------------------------------------------------------------------------------- 485 (741)
Q Consensus 485 ~------------------------------------------------------------------------------- 485 (741)
.
T Consensus 279 ~AL~~am~~~Ii~e~l~D~~Fv~~~T~gp~LV~~~~~~~~g~f~g~d~~~~~~~~~~w~~~~~~~g~~~~~~~l~~~~tv 358 (1009)
T TIGR01553 279 IAFLNGMIKYILEKELYQKEYVVNYTNASFIVGEGFAFEDGLFAGYNKETRKYDKSKWGYEFDENGNPKRDETLKHPRCV 358 (1009)
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccH
Confidence 1
Q ss_pred -------------HHHHHHH----cCHHHHHHHHhcCC----CcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCc
Q 004627 486 -------------KTLLEIA----EGRHPFFSAISNAK----NPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWN 544 (741)
Q Consensus 486 -------------~~l~~i~----~gi~~lA~~l~~a~----~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~ 544 (741)
+++++++ +.|+++|+.|++++ +++|++|+|+.+|.+|.++.+++.+|+.++|++|++|+
T Consensus 359 f~~lk~~v~~yTpE~va~itGVpae~I~~lA~~~a~a~~p~k~~~i~~g~G~tqh~~G~~~vrai~~L~lLtGniG~pGg 438 (1009)
T TIGR01553 359 FNILKEHYSRYTPEKVSAICGTPKELFLKVYEEYCKTGKPNKAMTILYALGWTQHSVGTQNIRAMSINQLLLGNIGVPGG 438 (1009)
T ss_pred HHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhcCCCCCcEEEEeCCccccchhHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1222222 23899999999874 56788999999999999999999999999999999999
Q ss_pred ceeecCchhhhhhhhhcCCC----CC------------------------------------------------------
Q 004627 545 GLNVLLLNAAQAAALDLGLV----PE------------------------------------------------------ 566 (741)
Q Consensus 545 g~~~l~~~~~~~g~~~~g~~----p~------------------------------------------------------ 566 (741)
|++.+.++.|.+|..++|.. |+
T Consensus 439 G~~~lrG~~NvqG~~d~g~~~~~lPgy~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 518 (1009)
T TIGR01553 439 GINALRGHSNVQGSTDHGLLMHILPGYLGTPRASIPTYEQYTKKFTPVSKDPQSANYWSNFPKFFASYIKSMWGDAATNE 518 (1009)
T ss_pred ccccCCCccccCCCcccccCcccCCcccccCchhhhhhhhhhhccccccccccccchhhccchhHHHHHHHhhccccccc
Confidence 99988887777766555421 10
Q ss_pred ----------CC------------CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCcccccc------
Q 004627 567 ----------SS------------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRA------ 610 (741)
Q Consensus 567 ----------~~------------~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~A------ 610 (741)
.+ ...++||++|++|.||+. .++|++++|+|++|+|+|+|+.||
T Consensus 519 n~~~~~~~p~~~~g~~~~~~~~~~~~~G~Ik~l~v~G~Np~~s~P~~~~~~~AL~kLdflVv~D~f~teTA~~A~~~~~~ 598 (1009)
T TIGR01553 519 NGWAYDYLPKGEDGYDSWLTLFDDMFQGKIKGFFAWGQNPLNSGPNSNKTREALTKLKWMVVMDPFDNETGSFWRGPGMD 598 (1009)
T ss_pred cccccccCCccccccchHHHHHHHHhCCCceEEEEeCCChhhcCCCHHHHHHHHhCCCEEEEEeCccCHHHHhhhhcCCc
Confidence 00 024679999999999953 478999999999999999999998
Q ss_pred -------ceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCC----------------CCCC-
Q 004627 611 -------NVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM----------------RLPY- 666 (741)
Q Consensus 611 -------DvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~----------------~~~y- 666 (741)
|||||+++++|++|+++|.++++|+.+++|+|+||+|+||+|+.+||++||. .++|
T Consensus 599 ~~d~~t~dvVLPaa~~~Ek~gt~tn~~r~vq~~~kav~P~gear~D~~I~~~La~rl~~~~~~~~~~~~~~~~~~~w~~~ 678 (1009)
T TIGR01553 599 PKEIKTEVFFLPTAVFIEKEGSISNSGRWMQWRYKGPDPPGNAIPDGDIIVELAKRVQELYAKEGGKLAEPVTKLKWDYW 678 (1009)
T ss_pred ccccCccEEEECCCCccccCeeEEcCCceEEEecccCCCccccCCHHHHHHHHHHHHHHHHHhcCCCCccccccCccccc
Confidence 7999999999999999999999999999999999999999999999999971 1333
Q ss_pred ----CCHHHHHHHHHHh
Q 004627 667 ----DTIGGIRSRIRTV 679 (741)
Q Consensus 667 ----~~~~~v~~~~~~~ 679 (741)
.+.++|++++...
T Consensus 679 ~~~~~~~~~i~~e~~g~ 695 (1009)
T TIGR01553 679 VPDHPDAHEIAKEINGY 695 (1009)
T ss_pred cCCCCCHHHHHHHcCCC
Confidence 3889999998644
No 18
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=100.00 E-value=8.8e-62 Score=575.07 Aligned_cols=400 Identities=25% Similarity=0.368 Sum_probs=343.5
Q ss_pred ecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHHH
Q 004627 288 TIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVAE 366 (741)
Q Consensus 288 siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA~ 366 (741)
|+|++|+.||+|.|+++||+|+||+|++++++|+||+|+|||+.++.+| |+||++||+|. +|+|++|||||||+++|+
T Consensus 1 t~C~~C~~~C~i~v~~~~g~i~rv~~~~~~~~n~g~~C~kg~~~~~~~~~~~Rl~~P~~R~-~g~~~~isWdeAl~~ia~ 79 (671)
T TIGR01591 1 TVCPYCGVGCSLNLVVKDGKIVRVEPYQGHKANRGHLCVKGYFAWEFINSKDRLTTPLIRE-GDKFREVSWDEAISYIAE 79 (671)
T ss_pred CcCCCCCCCCCEEEEEECCEEEEeecCCCCCCCCCcccCCccchhhhcCCcccccCCeEcC-CCCEEEccHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998 99999999998 689999999999999999
Q ss_pred HHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHH-cCCCcccCCCCcchhh------hhhhcCcccCCCccccccCCE
Q 004627 367 VMLQAK----PEEIVGIAGRLSDAESMMALKDFLNR-MGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKADC 435 (741)
Q Consensus 367 ~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~-lGs~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad~ 435 (741)
+|++++ +++++++.|+..++|+.+++++|++. +|+++++++.+.|... ..+|.. ..+.++.|+++||+
T Consensus 80 ~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~~~di~~ad~ 158 (671)
T TIGR01591 80 KLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIG-AMSNTISEIENADL 158 (671)
T ss_pred HHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCC-CCCCCHHHHHhCCE
Confidence 999764 57899999988888999999999996 9999998877665221 223322 23467899999999
Q ss_pred EEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHHHH--------------------
Q 004627 436 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLL-------------------- 489 (741)
Q Consensus 436 Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~l~-------------------- 489 (741)
||+||+||..++|++..+++++++ +|+|||+|||+.+.|+..++ +|+|...+.
T Consensus 159 il~~G~n~~~~~~~~~~~i~~a~~-~G~klvvidp~~s~ta~~ad~~i~i~Pgtd~al~lal~~~li~~~~~d~~f~~~~ 237 (671)
T TIGR01591 159 IVIIGYNPAESHPVVAQYLKNAKR-NGAKIIVIDPRKTETAKIADLHIPLKPGTDIALLNAMANVIIEEGLYDKAFIEKR 237 (671)
T ss_pred EEEECCChhhccCHHHHHHHHHHH-CCCeEEEECCCCChhhHhhCcccCCCCCcHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 999999999999999999999875 99999999999999987665 366654321
Q ss_pred --------------------HHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcc
Q 004627 490 --------------------EIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNG 545 (741)
Q Consensus 490 --------------------~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g 545 (741)
+++ +.|+++|++|+++++++|++|.|+.++.+|.++.+++..|+.++|+++++|+|
T Consensus 238 t~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~g~~G~g 317 (671)
T TIGR01591 238 TEGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAILWGMGVTQHSQGVETVMALINLAMLTGNIGKPGGG 317 (671)
T ss_pred hhCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEEecCcccccchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 111 12789999999999999999999999999999999999999999999999988
Q ss_pred eeecCchhhhhhhhhcCCCC-------------------------------CCC-------CCccCceEEEEeccCccC-
Q 004627 546 LNVLLLNAAQAAALDLGLVP-------------------------------ESS-------NSIESAKFVYLMGADDVD- 586 (741)
Q Consensus 546 ~~~l~~~~~~~g~~~~g~~p-------------------------------~~~-------~~~~~ik~l~l~g~np~~- 586 (741)
++.+.+..|..|..++|..| +.. ...+++|++|++++||+.
T Consensus 318 ~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~g~i~~l~~~~~np~~~ 397 (671)
T TIGR01591 318 VNPLRGQNNVQGACDMGALPDFLPGYQPVSDEEVREKFAKAWGVVKLPAEPGLRIPEMIDAAADGDVKALYIMGEDPLQS 397 (671)
T ss_pred CcccCCCCcCCCchhhccCcccCCCCCCCCCHHHHHHHHHHcCCCcCCCCCCCCHHHHHHHHhcCCceEEEEecCCcccc
Confidence 88776666665554443211 000 035789999999999953
Q ss_pred -------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHH
Q 004627 587 -------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEV 659 (741)
Q Consensus 587 -------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~ 659 (741)
.++|++++|+|++|+++++|+++||||||+++|+|++|+++|.++++|.++++|+|+||+|+||+|+++|+++
T Consensus 398 ~~~~~~~~~al~k~~~~V~~d~~~~~ta~~ADiVLP~~~~~E~~g~~~~~~~~~~~~~~~i~p~ge~r~~~~i~~~La~~ 477 (671)
T TIGR01591 398 DPNTSKVRKALEKLELLVVQDIFMTETAKYADVVLPAAAWLEKEGTFTNAERRIQRFFKAVEPKGESKPDWEIIQELANA 477 (671)
T ss_pred CCCHHHHHHHHhCCCEEEEEecCCCchhhhCCEEecCCcccCCCccEEcCCceEEEeccccCCCcCCCcHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCHHHHHHHHHHhCCCC--CCccccC
Q 004627 660 AGMRLPYDTIGGIRSRIRTVAPNL--LHVDERE 690 (741)
Q Consensus 660 lg~~~~y~~~~~v~~~~~~~~p~~--~~~~~l~ 690 (741)
||.++.|.+.+++++++....+.+ .+++++.
T Consensus 478 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 510 (671)
T TIGR01591 478 LGLDWNYNHPQEIMDEIRELTPLFAGLTYERLD 510 (671)
T ss_pred hCCCCCCCCHHHHHHHHHHhCccccCCCHHHHh
Confidence 999999999999999987765543 3555543
No 19
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=3.7e-61 Score=543.98 Aligned_cols=375 Identities=16% Similarity=0.191 Sum_probs=315.5
Q ss_pred eeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCC-------CccccccccccccccCC-CCCCCCcEEeCC---CCCeee
Q 004627 286 TETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDI-------NEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKA 354 (741)
Q Consensus 286 ~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~-------n~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~~~ 354 (741)
..+.|++|+.||+|.++++||+|+||+|++++|. |+|++|+||++.++.+| |+||++||+|+| +|+|++
T Consensus 5 ~~~~c~~C~~gC~i~~~v~dg~v~~v~g~~~~p~~~~~~~~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~ 84 (461)
T cd02750 5 RSTHGVNCTGSCSWNVYVKNGIVTREEQATDYPETPPDLPDYNPRGCQRGASFSWYLYSPDRVKYPLKRVGARGEGKWKR 84 (461)
T ss_pred ccCCCCCCCCCCceEEEEECCEEEEEecCCCCCcccccccccccccchhhhhhHhhhcChhhhccceeeccCCCCCceEE
Confidence 3456788999999999999999999999988876 68999999999999998 999999999974 689999
Q ss_pred cCHHHHHHHHHHHHHhcC----CCcEEEEEC-CCCCHHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCC
Q 004627 355 VNWRDALAVVAEVMLQAK----PEEIVGIAG-RLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT 425 (741)
Q Consensus 355 iSWdeAl~~iA~~Lk~i~----~~~i~~~~g-~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~ 425 (741)
|||||||++||++|++++ +++++++.| +..+.+..+++++|++.+|++++++....+. ....+|.. ..+.
T Consensus 85 isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~-~~~~ 163 (461)
T cd02750 85 ISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQ-TDVP 163 (461)
T ss_pred ecHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCC-CCCC
Confidence 999999999999998763 678888876 4455667777899999999999887665542 22233332 1234
Q ss_pred CccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHH------------
Q 004627 426 SISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT------------ 487 (741)
Q Consensus 426 ~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~------------ 487 (741)
++.|+++||+||+||+||.+++|....++++++ ++|+|||+|||+.+.|+..++ +|+|...
T Consensus 164 ~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar-~~GaklividPr~s~ta~~Ad~~l~i~PGtD~al~lal~~~i~~~~ 242 (461)
T cd02750 164 ESADWYNADYIIMWGSNVPVTRTPDAHFLTEAR-YNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALALAMAHVIIKEK 242 (461)
T ss_pred ChhHHhcCcEEEEECCChHHccCchHHHHHHHH-HCCCEEEEEcCCCCcchhhcCEEeccCCCcHHHHHHHHHHHHHHcC
Confidence 689999999999999999999999889998875 599999999999999987665 3666432
Q ss_pred ----------------------HHHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCC
Q 004627 488 ----------------------LLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 541 (741)
Q Consensus 488 ----------------------l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~ 541 (741)
+++++ +.|+++|+.|+++++++|++|.|+.++.+|.+..+++..|+.++|++|+
T Consensus 243 ~~d~~fl~~~t~~~~~v~t~e~~~~~~Gv~~~~I~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~g~ 322 (461)
T cd02750 243 LYDEDYLKEYTDLPFLVYTPAWQEAITGVPRETVIRLAREFATNGRSMIIVGAGINHWYHGDLCYRALILLLALTGNEGK 322 (461)
T ss_pred CccHHHHHHhcCChhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCcEEEeCCCcccccCchHHHHHHHHHHHHhCCCCC
Confidence 22222 2288999999999999999999999999999999999999999999999
Q ss_pred CCcceeecCchhhhhhhhhcCCCCCCCCCccCceEEEEeccCccC--------c-cCC-CCCCeEEEEcccCCccccccc
Q 004627 542 DWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------L-EKL-PNDAFVVYQGHHGDHGVYRAN 611 (741)
Q Consensus 542 ~g~g~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~--------~-~al-~k~~fvV~~d~~~~eta~~AD 611 (741)
+|+|+..+ .+.+|++|++|+||+. . +++ ++++|+|++|+|+|+|+++||
T Consensus 323 ~Ggg~~~~---------------------~g~ik~~~~~g~Np~~~~p~~~~~~~~a~~~~ldf~V~~d~~~teTa~~AD 381 (461)
T cd02750 323 NGGGWAHY---------------------VGQPRVLFVWRGNLFGSSGKGHEYFEDAPEGKLDLIVDLDFRMDSTALYSD 381 (461)
T ss_pred CCCccccC---------------------CCCceEEEEeCCChHhhCcCHhHHHHhhhhccCCEEEEEecCCCcccccCc
Confidence 98765321 2348999999999952 3 354 899999999999999999999
Q ss_pred eeccCCCCCCCCc-eEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCC-----CCCCCHHHHHHHHHHhCCCC
Q 004627 612 VILPASAFSEKEG-TYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR-----LPYDTIGGIRSRIRTVAPNL 683 (741)
Q Consensus 612 vVLP~a~~~Ek~g-t~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~-----~~y~~~~~v~~~~~~~~p~~ 683 (741)
||||+++|+|++| ++.+.++++|..+|+++|+||+|+||+|+++||++|+.. +.|....++++++++..|.+
T Consensus 382 vVLP~~~~~E~~~~~~~~~~~~~~~~~~~i~p~gear~d~~I~~~La~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 459 (461)
T cd02750 382 IVLPAATWYEKHDLSTTDMHPFIHPFSPAVDPLWEAKSDWEIFKALAKKVPWRTLTGRQQFYLDHDWFLELGETLPTY 459 (461)
T ss_pred EEEecCCCcccCCccccCCCceEEEcccccCCCccCcCHHHHHHHHHHhcCchhhcccchhhhccHHHHHhcccCCCC
Confidence 9999999999999 677899999999999999999999999999999999754 44556679999988776643
No 20
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=100.00 E-value=6e-61 Score=545.35 Aligned_cols=388 Identities=27% Similarity=0.367 Sum_probs=325.5
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 365 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA 365 (741)
+|+|++|+.||+|.|+++||+|+||+|++++++|+|++|+|||+.++.+| |+||++||+|. +|+|++|||||||++||
T Consensus 1 ~s~C~~C~~gC~i~v~v~dg~v~rv~~~~~~~~n~g~lC~kG~~~~~~~~~~~Rl~~Pl~R~-~g~~~~isWdeAl~~ia 79 (472)
T cd02771 1 PSICHHCSVGCNISLGERYGELRRVENRYNGAVNHYFLCDRGRFGYGYVNSRDRLTQPLIRR-GGTLVPVSWNEALDVAA 79 (472)
T ss_pred CCcCcCcccCCCcEEEEECCEEEEEECCCCCCCCCcccchhhhcccccccCCcccCCCceec-CCceeEecHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999997 99999999998 68999999999999999
Q ss_pred HHHHhcCCCcEEEEECCCCCHHHHHHHHHHHH-HcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEEcCChh
Q 004627 366 EVMLQAKPEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPR 444 (741)
Q Consensus 366 ~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~ 444 (741)
++|++++ ++++++.++..++|+.+++++|++ .+|++++++....+. ...+...+..+.++.|+++||+||+||+||.
T Consensus 80 ~~l~~~~-~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~~~~~~-~~~~~~~~~~~~~~~di~~ad~il~~G~n~~ 157 (472)
T cd02771 80 ARLKEAK-DKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHRARRLI-AEILRNGPIYIPSLRDIESADAVLVLGEDLT 157 (472)
T ss_pred HHHHHhh-hhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcchhhhh-hhhhcccCCCCCCHHHHHhCCEEEEEeCCcc
Confidence 9999986 578888888888999999999998 589988765443221 1122222234567899999999999999999
Q ss_pred hhhhHHHHHHHHHHHhC-------------------------CCEEEEEccCCCCCccccc------cCCCHHHHHHHH-
Q 004627 445 VEAAMVNARIRKTVRAN-------------------------NAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA- 492 (741)
Q Consensus 445 ~~~p~~~~rlr~a~~~~-------------------------gakiivIdp~~~~t~~~~~------lG~d~~~l~~i~- 492 (741)
+++|++..+++++.+++ |+++++|||+.+.+...++ .|++.+....+.
T Consensus 158 ~~~p~~~~~~~~a~~~~~~~~v~~~~~~~~a~~a~~~~~~~pg~~~~~i~~~~~~~~~~ad~~~~~~pg~~~al~~~l~~ 237 (472)
T cd02771 158 QTAPRIALALRQAARRKAVELAALSGIPKWQDAAVRNIAQGAKSPLFIVNALATRLDDIAAESIRASPGGQARLGAALAR 237 (472)
T ss_pred ccchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcccCCCCceEEeechhhhhhhhhhhhhhhCcCCHHHHHHHHHh
Confidence 99999999999987766 6677777776665543322 355443322221
Q ss_pred ---------------cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhh
Q 004627 493 ---------------EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAA 557 (741)
Q Consensus 493 ---------------~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g 557 (741)
+.|+++|+.|+++++++|++|.+. ++.+..+++..|+.++|+++ +|+|+..+....|..|
T Consensus 238 ~~~~~~~~~~gv~~~~~i~~lA~~l~~a~~~~i~~g~g~----~~~~~~~al~~L~~~~G~~g-~g~g~~~~~~~~n~~g 312 (472)
T cd02771 238 AVDASAAGVSGLAPKEKAARIAARLTGAKKPLIVSGTLS----GSLELIKAAANLAKALKRRG-ENAGLTLAVEEGNSPG 312 (472)
T ss_pred hChhhhhhccCCChHHHHHHHHHHHhcCCCcEEEECCCc----CcHHHHHHHHHHHHHhcCCC-CCcceeeccccccchh
Confidence 226789999999999999999987 56789999999999999998 5667777776677777
Q ss_pred hhhcCCCCC---CC-------CCccCceEEEEeccCccC-------ccCCCCCCeEEEEcccCCccccccceeccCCCCC
Q 004627 558 ALDLGLVPE---SS-------NSIESAKFVYLMGADDVD-------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 620 (741)
Q Consensus 558 ~~~~g~~p~---~~-------~~~~~ik~l~l~g~np~~-------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~ 620 (741)
..++|..|. .. ...+++|++|++|.||+. .++|++++|+|++|+|+++|+.+||||||+++|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~~~~~~al~~~~~~V~~d~~~t~ta~~ADvvLP~~~~~ 392 (472)
T cd02771 313 LLLLGGHVTEPGLDLDGALAALEDGSADALIVLGNDLYRSAPERRVEAALDAAEFVVVLDHFLTETAERADVVLPAASFA 392 (472)
T ss_pred hhhcCCCCCCCCCCHHHHHHHHhcCCceEEEEeccCcccCCChHHHHHHHhcCCeEEEEecCCChhHHhCCEEeccCccc
Confidence 777665332 11 146789999999999953 4568899999999999999999999999999999
Q ss_pred CCCceEEcCCCeeEeecccc-CCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCC
Q 004627 621 EKEGTYENTEGCTQQTLPAV-PTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNL 683 (741)
Q Consensus 621 Ek~gt~~n~eg~vq~~~~av-~P~gear~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~ 683 (741)
|++|+++|.+|++|..++++ +|+||+|+||+|+++|+++||.++.| +..++++++.+..|.+
T Consensus 393 E~~g~~~~~~~~~~~~~~~i~~p~ge~k~d~~I~~~La~rlg~~~~~-~~~~~~~~~~~~~~~~ 455 (472)
T cd02771 393 EKSGTFVNYEGRAQRFFKAYDDPAGDARSDWRWLHALAAKLGGKLVP-SDAAILDEIIALVPGK 455 (472)
T ss_pred ccCCcEEccCCeEEEeeecccCCCccCchHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHhHHh
Confidence 99999999999999999999 99999999999999999999999877 8889999998887765
No 21
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=100.00 E-value=1.2e-60 Score=529.52 Aligned_cols=366 Identities=43% Similarity=0.589 Sum_probs=306.5
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 365 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA 365 (741)
+|+|++|+.||+|.|+++||+|+||+|+++||+|+||+|+|||++++.+| |+||++||+|+ +|+|++||||||++.||
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~~i~~~~~~~~n~g~~C~kg~~~~~~~~~~~Rl~~Pl~r~-~~~~~~isWdeAl~~ia 79 (386)
T cd02768 1 ESIDVHDALGSNIRVDVRGGEVMRILPRENEAINEEWISDKGRFGYDGLNSRQRLTQPLIKK-GGKLVPVSWEEALKTVA 79 (386)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEeCCCCCCCCCceecccccchhhccCCcccccCCeEec-CCceeEcCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999998 99999999998 68999999999999999
Q ss_pred HHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhh--cCcccCCCccccccCCEEEEEcCCh
Q 004627 366 EVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLR--SGYIMNTSISGLEKADCFLLVGTQP 443 (741)
Q Consensus 366 ~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~--~~~~~~~~~~di~~ad~Ill~G~Np 443 (741)
++|+++++++++++.|+..++|+.+++++|++.+|++++++....+....... ..+..+.++.|+++||+||+||.||
T Consensus 80 ~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~ 159 (386)
T cd02768 80 EGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEADAVLLIGSNL 159 (386)
T ss_pred HHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCCEEEEEcCCc
Confidence 99999987899999999999999999999999999998877554432211111 1123346789999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cC-CCHHHHHHHH--cCHHHHHHHHhcCCCcEEEEcC
Q 004627 444 RVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LG-TGPKTLLEIA--EGRHPFFSAISNAKNPVIIVGA 514 (741)
Q Consensus 444 ~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG-~d~~~l~~i~--~gi~~lA~~l~~a~~~~Ii~G~ 514 (741)
..++|++..|++++.+++|+||++|||+.+.+ .++ +| .....+..+. +++.++|+.|+++++++|++|.
T Consensus 160 ~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg~~~~~~l~~~i~~~~~~~~a~~l~~a~~~~i~~g~ 237 (386)
T cd02768 160 RKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPLGASLATLLDIAEGKHLKPFAKSLKKAKKPLIILGS 237 (386)
T ss_pred chhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCchhHHHHHHHHHhhccHHHHHHHHhcCCCcEEEEcc
Confidence 99999999999998775699999999999888 332 24 3333444443 2356899999999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCC--CCCCC-CCccCceEEEEeccCccC-----
Q 004627 515 GLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGL--VPESS-NSIESAKFVYLMGADDVD----- 586 (741)
Q Consensus 515 g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~--~p~~~-~~~~~ik~l~l~g~np~~----- 586 (741)
++. +.++.+..+++..|+.++|. +++++ .+....|..|....+. ..... ...+++|++|++|+||+.
T Consensus 238 ~~~-~~~~~~~~~a~~~l~~~~G~---~~~~~-~~~~~~n~~g~~~~~~~~~~~~~~~~~~~i~~l~v~~~np~~~~p~~ 312 (386)
T cd02768 238 SAL-RKDGAAILKALANLAAKLGT---GAGLW-NGLNVLNSVGARLGGAGLDAGLALLEPGKAKLLLLGEDELDRSNPPA 312 (386)
T ss_pred hhh-cCCcHHHHHHHHHHHHHhCC---CCccc-cccHHHHHHHHHHhcCCHHHHhhhccCCceeEEEEcCCCccccChHH
Confidence 998 88999999999999999983 22222 2333444445444331 11111 145789999999999953
Q ss_pred ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHh
Q 004627 587 LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 660 (741)
Q Consensus 587 ~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~l 660 (741)
..+|.+++|+|++|.|+|+|+++||||||+++|+|++|+|+|.+|++|.++|+++|+||+|+||+|+.+||++|
T Consensus 313 ~~al~~~~~~Vv~d~~~teta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~i~p~~~~~~d~~i~~~La~~~ 386 (386)
T cd02768 313 AVALAAADAFVVYQGHHGDTGAQADVILPAAAFTEKSGTYVNTEGRVQRFKKAVSPPGDAREDWKILRALSNLL 386 (386)
T ss_pred HHHHhcCCeEEEEeccCchhhhhCCEEeccCcccccCceEECCCCceEEeccccCCCccchhHHHHHHHHHhhC
Confidence 12788999999999999999999999999999999999999999999999999999999999999999999985
No 22
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.9e-60 Score=547.15 Aligned_cols=392 Identities=14% Similarity=0.156 Sum_probs=309.1
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 365 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA 365 (741)
+|+|++|+.||+|.|+++||+|+||+|+++||+|+|++|+||++.++.+| |+||++||+|+ +|+|++|||||||++||
T Consensus 1 ~t~C~~C~~~C~i~v~v~~g~ivkv~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~-~g~~~~isWdeAl~~ia 79 (539)
T cd02762 1 KRACILCEANCGLVVTVEDGRVASIRGDPDDPLSKGYICPKAAALGDYQNDPDRLRTPMRRR-GGSFEEIDWDEAFDEIA 79 (539)
T ss_pred CccCCCcccCCCeEEEEECCEEEEEECCCCCCCCCCccChhhhhhhhhccCchhccCCcEec-CCceeEeCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999987 99999999998 68999999999999999
Q ss_pred HHHHhcC----CCcEEEEECCCCCH-HHHH-HHHHHHHHcCCCcccCCCCcchhh------hhhhcCcccCCCccccccC
Q 004627 366 EVMLQAK----PEEIVGIAGRLSDA-ESMM-ALKDFLNRMGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKA 433 (741)
Q Consensus 366 ~~Lk~i~----~~~i~~~~g~~~~~-e~~~-~~~~l~~~lGs~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~a 433 (741)
++|++++ +++|+++.|+.... +..+ ..++|++.+|+++++.....|... ..+|.. .+.++.|+++|
T Consensus 80 ~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~G~~--~~~~~~D~~~a 157 (539)
T cd02762 80 ERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSAATADQKPGHFWSGLMFGHP--GLHPVPDIDRT 157 (539)
T ss_pred HHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHhcCCC--CCCCchhhhhC
Confidence 9999875 57899888765444 3333 346788899999988766554221 233332 23578999999
Q ss_pred CEEEEEcCChhhhhhHHHH------HHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHH--------------
Q 004627 434 DCFLLVGTQPRVEAAMVNA------RIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT-------------- 487 (741)
Q Consensus 434 d~Ill~G~Np~~~~p~~~~------rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~-------------- 487 (741)
|+||+||+||.+++|+++. +++++ +++|+|||+|||+.+.|+..++ +|+|...
T Consensus 158 d~il~~G~N~~~s~~~~~~~~~~~~~~~~a-~~~G~kliviDPr~t~ta~~AD~~l~irPGtD~aL~~a~~~~ii~~~~~ 236 (539)
T cd02762 158 DYLLILGANPLQSNGSLRTAPDRVLRLKAA-KDRGGSLVVIDPRRTETAKLADEHLFVRPGTDAWLLAAMLAVLLAEGLT 236 (539)
T ss_pred CEEEEEecChHhhCCccccccCHHHHHHHH-HhCCCEEEEECCCCchhhHhcCEeeCcCCCcHHHHHHHHHHHHHHCCCC
Confidence 9999999999999987654 56555 4599999999999999987765 2666432
Q ss_pred --------------------------HHHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcC
Q 004627 488 --------------------------LLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGN 537 (741)
Q Consensus 488 --------------------------l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G 537 (741)
+++++ +.|+++|+.|+++++++|++|.|++++.+|....+++..|++++|
T Consensus 237 D~~fi~~~t~Gf~~~~~~~~~~t~e~~~~~tGv~~~~I~~lA~~~a~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~~ltG 316 (539)
T cd02762 237 DRRFLAEHCDGLDEVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQTQLFGTLCSWLVKLLNLLTG 316 (539)
T ss_pred ChHHHHHHcCcHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHhcCCceEEEECcccccccCcHHHHHHHHHHHHHhC
Confidence 22222 228899999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecC-----chhhhh----hhhhc---------CCCCCC-------CCCccCceEEEEeccCccC------
Q 004627 538 VIRPDWNGLNVLL-----LNAAQA----AALDL---------GLVPES-------SNSIESAKFVYLMGADDVD------ 586 (741)
Q Consensus 538 ~~~~~g~g~~~l~-----~~~~~~----g~~~~---------g~~p~~-------~~~~~~ik~l~l~g~np~~------ 586 (741)
++|++|+|+.... +..+.. +.+.. +..|.. ....++||++|++++||+.
T Consensus 317 ~~g~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ik~l~~~~~Np~~~~p~~~ 396 (539)
T cd02762 317 NLDRPGGAMFTTPALDLVGQTSGRTIGRGEWRSRVSGLPEIAGELPVNVLAEEILTDGPGRIRAMIVVAGNPVLSAPDGA 396 (539)
T ss_pred CCCCCCCccCCCCCCccccCCCcccccccccccccCCCCcccccCcHHHHHHHHhcCCCCceEEEEEeCCCccccCCCHH
Confidence 9999998865421 111110 00110 011100 0135789999999999963
Q ss_pred --ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCce-EEcC---CCeeEeeccccCCCCCCccHHHHHHHHHHHh
Q 004627 587 --LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGT-YENT---EGCTQQTLPAVPTVGDARDDWKIIRALSEVA 660 (741)
Q Consensus 587 --~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt-~~n~---eg~vq~~~~av~P~gear~d~~Il~~La~~l 660 (741)
.++|++++|+|++|+|+|+|+++||||||+++|+|++|. +.+. +++++..+|+|+|+||+|+||||+++||++|
T Consensus 397 ~~~~al~~ldf~V~~D~~~teTa~~ADiVLPa~~~~E~~d~~~~~~~~~~~~~~~~~~vi~P~ge~k~d~~I~~~La~rl 476 (539)
T cd02762 397 RLEAALGGLEFMVSVDVYMTETTRHADYILPPASQLEKPHATFFNLEFPRNAFRYRRPLFPPPPGTLPEWEILARLVEAL 476 (539)
T ss_pred HHHHHHhcCCeEEEeecccCcchhhCCEEecCCCccccCCccccccccceeEEEEeccccCCCCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999984 3343 4689999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhCC--CCCCccccCC
Q 004627 661 GMRLPYDTIGGIRSRIRTVAP--NLLHVDEREP 691 (741)
Q Consensus 661 g~~~~y~~~~~v~~~~~~~~p--~~~~~~~l~~ 691 (741)
+++++......+ ...+|++|..
T Consensus 477 ---------~~~~~~~~~~~~~~~g~~~~~l~~ 500 (539)
T cd02762 477 ---------DAVLRAGFYGERAGGTLLLAALLE 500 (539)
T ss_pred ---------HHHHHhCCCCcccccCccHHHHHh
Confidence 444443221111 1257787764
No 23
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=3e-60 Score=539.45 Aligned_cols=353 Identities=18% Similarity=0.215 Sum_probs=305.1
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeC---CCCCeeecCHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRFKAVNWRDALA 362 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~---g~g~~~~iSWdeAl~ 362 (741)
.|+|++|+.+|+|.|+++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|+ |+|+|++|||||||+
T Consensus 1 ~t~C~~C~~~C~l~v~v~~g~v~~v~g~~~~p~n~g~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~isWdeAl~ 80 (477)
T cd02759 1 KGTCPGCHSGCGVLVYVKDGKLVKVEGDPNHPTNKGRLCMRGLAAPEIVYHPDRLLYPLKRVGERGENKWERISWDEALD 80 (477)
T ss_pred CccCcCCcCCCCEEEEEECCEEEEEEcCCCCCCCCCccCccccchHhhhcCchhhccCceecCCCCCCcEEEecHHHHHH
Confidence 48999999999999999999999999999999999999999999999998 99999999997 368999999999999
Q ss_pred HHHHHHHhcC----CCcEEEEEC-CCCCHHHHHHHH-HHHHHcCCCcccCCCCcchhhh------hhhcCcccCCCcccc
Q 004627 363 VVAEVMLQAK----PEEIVGIAG-RLSDAESMMALK-DFLNRMGSNNVWCEGTGAQSNA------DLRSGYIMNTSISGL 430 (741)
Q Consensus 363 ~iA~~Lk~i~----~~~i~~~~g-~~~~~e~~~~~~-~l~~~lGs~~~~~~~~~~~~~~------~~~~~~~~~~~~~di 430 (741)
+|+++|++++ +++|+++.| +..+.+..++++ +|++.+|++|+++....|.... .+|. ..+.++.|+
T Consensus 81 ~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~--~~~~~~~d~ 158 (477)
T cd02759 81 EIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGF--GLGYDEPDW 158 (477)
T ss_pred HHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhcc--CCCCCchhh
Confidence 9999999864 578888765 556666666666 7999999999888777663221 2222 234678999
Q ss_pred ccCCEEEEEcCChhhhhh-HHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHHH---------------
Q 004627 431 EKADCFLLVGTQPRVEAA-MVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL--------------- 488 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p-~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~l--------------- 488 (741)
++||+||+||+||.+++| ...+++++++ ++|+|||+|||+.+.|+..++ +|+|...+
T Consensus 159 ~~ad~Il~~G~n~~~~~~~~~~~~~~~ar-~~g~klividpr~s~ta~~Ad~~l~i~PGtD~al~~al~~~i~~~~~~d~ 237 (477)
T cd02759 159 ENPECIVLWGKNPLNSNLDLQGHWLVAAM-KRGAKLIVVDPRLTWLAARADLWLPIRPGTDAALALGMLNVIINEGLYDK 237 (477)
T ss_pred hcCCEEEEEccChhhhCcHHHHHHHHHHH-HCCCEEEEECCCCChhhHhhCeeeccCCCcHHHHHHHHHHHHHHCCCcCH
Confidence 999999999999999999 8889998876 489999999999999976654 25554321
Q ss_pred -------------------------HHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCC
Q 004627 489 -------------------------LEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI 539 (741)
Q Consensus 489 -------------------------~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~ 539 (741)
++++ +.|+++|++|+++++++|++|.|+.++.+|.+..+++..|+.++|++
T Consensus 238 ~f~~~~t~g~~~~~~~~~~~t~e~~~~itGv~~~~i~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~i 317 (477)
T cd02759 238 DFVENWCYGFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAKPACIQWGLAIDQQKNGTQTSRAIAILRAITGNL 317 (477)
T ss_pred HHHHHHhccHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEcCCcceeccchHHHHHHHHHHHHHhCCC
Confidence 1221 12889999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecCchhhhhhhhhcCCCCCCCCCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccc
Q 004627 540 RPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRAN 611 (741)
Q Consensus 540 ~~~g~g~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~AD 611 (741)
+++|+++.. .++||++|++|+||+. .++|++++|+|++|.|+|+|+++||
T Consensus 318 ~~~Gg~~~~----------------------~~~ik~l~v~g~Np~~~~p~~~~~~~al~~~~~vV~~d~~~teTa~~AD 375 (477)
T cd02759 318 DVPGGNLLI----------------------PYPVKMLIVFGTNPLASYADTAPVLEALKALDFIVVVDLFMTPTAMLAD 375 (477)
T ss_pred CCCCCccCC----------------------CCCcEEEEEeCCCccccCCCHHHHHHHHhcCCeEEEEecCcCchHhhCC
Confidence 998865432 2579999999999953 4678999999999999999999999
Q ss_pred eeccCCCCCCCCceEEcC--CCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCC
Q 004627 612 VILPASAFSEKEGTYENT--EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRL 664 (741)
Q Consensus 612 vVLP~a~~~Ek~gt~~n~--eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~ 664 (741)
||||+++|+|++|++++. ++++|..+|+|+|+||+|+||+|+++||++||.+.
T Consensus 376 vVLP~~~~~E~~g~~~~~~~~~~~~~~~~~i~P~ge~r~d~~I~~~La~~lg~~~ 430 (477)
T cd02759 376 IVLPVAMSLERPGLRGGFEAENFVQLRQKAVEPYGEAKSDYEIVLELGKRLGPEE 430 (477)
T ss_pred EEecCccccccccccccccccceEEEeccccCCCCCCcCHHHHHHHHHHHhCCCh
Confidence 999999999999999987 79999999999999999999999999999999853
No 24
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=100.00 E-value=1e-59 Score=526.64 Aligned_cols=364 Identities=28% Similarity=0.428 Sum_probs=303.1
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 365 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA 365 (741)
+|+|++|+.||+|.|+++||+|+||+|++++++|+|++|+|||+.++.+| |+||++||+|. +|+|++||||||+++|+
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~~v~~~~~~~~n~g~lC~kg~~~~~~~~~~~Rl~~Pm~R~-~g~~~~isWdeAl~~ia 79 (414)
T cd02772 1 KSVSPHDALGSNLVVHVKNNKVMRVVPRENEAINECWLSDRDRFSYEGLNSEDRLTKPMIKK-DGQWQEVDWETALEYVA 79 (414)
T ss_pred CccCCCCCCCCCeEEEEECCEEEEEEcCCCCCCCCCccCcchhhhhhcccCccccCCCeEec-CCceEEecHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998 89999999998 78999999999999999
Q ss_pred HHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhh--hhcCcccCCCccccccCCEEEEE
Q 004627 366 EVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNAD--LRSGYIMNTSISGLEKADCFLLV 439 (741)
Q Consensus 366 ~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~--~~~~~~~~~~~~di~~ad~Ill~ 439 (741)
++|++++ +++|+++.|+..++|+.+++++|++.+|++++++....+..... .......+.++.|+++||+||+|
T Consensus 80 ~~l~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~ 159 (414)
T cd02772 80 EGLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLGMPIAEISELDRVLVI 159 (414)
T ss_pred HHHHHHHHhcCcceEEEEecCCCCcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCCCCCCcHHHHHhCCEEEEE
Confidence 9999875 37899998888889999999999999999988775543321111 11112345688999999999999
Q ss_pred cCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccccCCCH----H---HH----H---HH----------H---
Q 004627 440 GTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGP----K---TL----L---EI----------A--- 492 (741)
Q Consensus 440 G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~lG~d~----~---~l----~---~i----------~--- 492 (741)
|+||.+++|.+..+++++.+ +|+||++|||+.+.+... ..+++. + .+ . +. +
T Consensus 160 G~n~~~~~p~~~~~l~~a~~-~g~k~i~idp~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~ 237 (414)
T cd02772 160 GSNLRKEHPLLAQRLRQAVK-KGAKLSAINPADDDFLFP-LSGKAIVAPSALANALAQVAKALAEEKGLAVPDEDAKVEA 237 (414)
T ss_pred CCCccccchHHHHHHHHHHH-cCCEEEEEeCccchhhcc-cccccccCcHHHHHHHHHHHHHHHHhcCcCChHHHhcCCC
Confidence 99999999999999999875 899999999987654221 112221 0 00 0 10 1
Q ss_pred -cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCC-CCCCcceeecCchhhhhhhhhcCCCCCCC--
Q 004627 493 -EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI-RPDWNGLNVLLLNAAQAAALDLGLVPESS-- 568 (741)
Q Consensus 493 -~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~-~~~g~g~~~l~~~~~~~g~~~~g~~p~~~-- 568 (741)
+.|+++|+.|+++++++|++|.++.++.++..+.+++..|+.++|+. +..+ +..|..|...+|..|...
T Consensus 238 ~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg~~~~~~~-------~~~n~~g~~~~g~~p~~~~~ 310 (414)
T cd02772 238 SEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGATLGVLG-------EGANSVGAYLAGALPHGGLN 310 (414)
T ss_pred HHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHCcCccCCC-------CccchHHHHHhCCCCCCCCC
Confidence 23789999999999999999999999999999999999999999973 3333 334556666777665310
Q ss_pred ---CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccc-cceeccCCCCCCCCceEEcCCCeeEee
Q 004627 569 ---NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYR-ANVILPASAFSEKEGTYENTEGCTQQT 636 (741)
Q Consensus 569 ---~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~-ADvVLP~a~~~Ek~gt~~n~eg~vq~~ 636 (741)
...+++|++|+++.||+. .++|.+++|+|++|+|+++|+++ ||||||+++|+|++|+|+|.+|++|..
T Consensus 311 ~~~~~~~~~~~~~v~~~np~~~~p~~~~~~~al~k~~f~V~~d~~~t~ta~~~ADvvLP~~~~~E~~g~~~~~~~~~~~~ 390 (414)
T cd02772 311 AAAMLEQPRKAYLLLNVEPELDCANPAQALAALNQAEFVVALSAFASAALLDYADVLLPIAPFTETSGTFVNLEGRVQSF 390 (414)
T ss_pred HHHHhcccCCEEEEeCCCccccCCCHHHHHHHHhcCCEEEEEeccCCcchhhcCCEEecCCccccCCcCeECCCCcEEee
Confidence 134578999999999952 45788999999999999999996 999999999999999999999999999
Q ss_pred ccccCCCCCCccHHHHHHHHHHHh
Q 004627 637 LPAVPTVGDARDDWKIIRALSEVA 660 (741)
Q Consensus 637 ~~av~P~gear~d~~Il~~La~~l 660 (741)
+|+++|+||+|+||+|+.+||+.+
T Consensus 391 ~~~v~p~ge~r~d~~i~~~La~~~ 414 (414)
T cd02772 391 KGVVKPLGEARPAWKVLRVLGNLL 414 (414)
T ss_pred ccccCCCcccchHHHHHHHHHhhC
Confidence 999999999999999999999753
No 25
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=7.2e-60 Score=532.83 Aligned_cols=355 Identities=17% Similarity=0.194 Sum_probs=297.3
Q ss_pred eeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeC---CCCCeeecCHHHHH
Q 004627 286 TETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG---ADGRFKAVNWRDAL 361 (741)
Q Consensus 286 ~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~---g~g~~~~iSWdeAl 361 (741)
++|+|++|+.||++.|+++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|+ |+|+|++|||||||
T Consensus 1 ~~t~C~~C~~~C~l~v~v~dG~v~~v~g~~~~p~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~iSWdeAl 80 (454)
T cd02755 1 VPSICEMCSSRCGILARVEDGRVVKIDGNPLSPLSRGKLCARGNAGIQLLYDPDRLKKPLIRVGERGEGKFREASWDEAL 80 (454)
T ss_pred CCccCcCcccCCCcEEEEECCEEEEEECCCCCCCCCccCCccchhhHhhhCCcchhcCCeeecCCCCCCeEEEeCHHHHH
Confidence 468999999999999999999999999999999999999999999999998 99999999997 47899999999999
Q ss_pred HHHHHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcC----cccCCCccccccC
Q 004627 362 AVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSG----YIMNTSISGLEKA 433 (741)
Q Consensus 362 ~~iA~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~----~~~~~~~~di~~a 433 (741)
++||++|++++ +++++++.+... ..+++++|++.+|++|++...+.|......+.. .....+..|+++|
T Consensus 81 ~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~lGt~n~~~~~~~c~~~~~~~~~~~~g~~~~~~~~d~~~a 157 (454)
T cd02755 81 QYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAAAFGSPNIFSHESTCLASKNLAWKLVIDSFGGEVNPDFENA 157 (454)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHHHhCCCCCCCccccchhHHHHHHHHHhhccCCCCCcchhcC
Confidence 99999999875 456766655443 346789999999999988766666322211110 1123468899999
Q ss_pred CEEEEEcCChhhhhhH-HHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHH-------------------
Q 004627 434 DCFLLVGTQPRVEAAM-VNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKT------------------- 487 (741)
Q Consensus 434 d~Ill~G~Np~~~~p~-~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~------------------- 487 (741)
|+||+||+||.+++++ ...++++++ ++|+|||+|||+.+.|+..++ +|+|...
T Consensus 158 d~il~~G~n~~~~~~~~~~~~~~~a~-~~g~kiivIdPr~t~ta~~AD~~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi 236 (454)
T cd02755 158 RYIILFGRNLAEAIIVVDARRLMKAL-ENGAKVVVVDPRFSELASKADEWIPIKPGTDLAFVLALIHVLISENLYDAAFV 236 (454)
T ss_pred CEEEEECcCcccccccHHHHHHHHHH-HCCCeEEEECCCCChhhHhhCEecCCCCCcHHHHHHHHHHHHHHcCCccHHHH
Confidence 9999999999999764 678888886 489999999999999987665 2555431
Q ss_pred ---------------------HHHHH----cCHHHHHHHHhc-CCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCC
Q 004627 488 ---------------------LLEIA----EGRHPFFSAISN-AKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 541 (741)
Q Consensus 488 ---------------------l~~i~----~gi~~lA~~l~~-a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~ 541 (741)
+++++ +.|+++|++|++ +++++|++|++..++.+|.+..+++..|+.++|++++
T Consensus 237 ~~~t~g~~~~~~~~~~~t~e~~~~~~gv~~~~i~~~A~~~a~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ltG~ig~ 316 (454)
T cd02755 237 EKYTNGFELLKAHVKPYTPEWAAQITDIPADTIRRIAREFAAAAPHAVVDPGWRGTFYSNSFQTRRAIAIINALLGNIDK 316 (454)
T ss_pred HHHccCHHHHHHHHhcCCHHHHHHHHCCCHHHHHHHHHHHHhhCCCEEEECCccccccCchHHHHHHHHHHHHHhCCCCC
Confidence 22222 228899999998 5677888899999999999999999999999999999
Q ss_pred CCcceeecCchhhhhhhhhcCCCCCCCCCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCcccccccee
Q 004627 542 DWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVI 613 (741)
Q Consensus 542 ~g~g~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvV 613 (741)
+|+++... +. ..+++|++|++|+||+. .++|++++|+|++|.|+|+|+++||||
T Consensus 317 ~Gg~~~~~------------~~------~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~l~f~V~~d~~~teTa~~ADiV 378 (454)
T cd02755 317 RGGLYYAG------------SA------KPYPIKALFIYRTNPFHSMPDRARLIKALKNLDLVVAIDILPSDTALYADVI 378 (454)
T ss_pred CCCcccCC------------CC------CCCCceEEEEcCCCcccccCCHHHHHHHHhcCCeEEEEeCCcCchHhhCCEE
Confidence 88543210 00 24789999999999953 468899999999999999999999999
Q ss_pred ccCCCCCCCCceEEcC---CCeeEeeccccCCCCCCccHHHHHHHHHHHhCC
Q 004627 614 LPASAFSEKEGTYENT---EGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM 662 (741)
Q Consensus 614 LP~a~~~Ek~gt~~n~---eg~vq~~~~av~P~gear~d~~Il~~La~~lg~ 662 (741)
||+++|+|++|++++. +++++..+|+|+|+||+|+||||+.+||++||+
T Consensus 379 LP~~~~~E~~~~~~~~~~~~~~~~~~~~~v~P~ge~r~d~~i~~~la~~lg~ 430 (454)
T cd02755 379 LPEATYLERDEPFSDKGGPAPAVATRQRAIEPLYDTRPGWDILKELARRLGL 430 (454)
T ss_pred eCCCccccccccccccCCCcceeEEecccCCCCcCCcCHHHHHHHHHHHhCC
Confidence 9999999999999885 578999999999999999999999999999996
No 26
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=100.00 E-value=4.9e-59 Score=559.44 Aligned_cols=383 Identities=18% Similarity=0.171 Sum_probs=313.7
Q ss_pred eeeeeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC------CCCeeec
Q 004627 283 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA------DGRFKAV 355 (741)
Q Consensus 283 l~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g------~g~~~~i 355 (741)
.++++|+|++|+.||+|.++++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|++ +|+|++|
T Consensus 40 ~~~~~s~C~~C~~~C~l~~~v~dG~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~~~g~~~g~g~~~~i 119 (830)
T TIGR01706 40 IKWDKAPCRFCGTGCGVMVGVKDGRVVATQGDPAAPVNRGLNCIKGYFLSKIMYGQDRLTQPLLRMKDGKYDKDGEFTPV 119 (830)
T ss_pred ceEEEEECCCCCCCCCeEEEEECCEEEEeecCCCCCCCCCccCcchhhhhhhcCCcchhcCCEEecCCCCcccCCCeeEc
Confidence 456789999999999999999999999999999999999999999999999998 999999999963 5899999
Q ss_pred CHHHHHHHHHHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHH-HcCCCcccCCCCcchhh------hhhhcCcccC
Q 004627 356 NWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSN------ADLRSGYIMN 424 (741)
Q Consensus 356 SWdeAl~~iA~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~------~~~~~~~~~~ 424 (741)
||||||++||++|++++ +++|+++.++..+.|+.+++.+|++ .+|++|++...+.|... ..+|... ..
T Consensus 120 SWDeAl~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~~~~~~~~~~~~~gt~~~~~~~~~c~~~~~~~~~~~~G~~~-~~ 198 (830)
T TIGR01706 120 SWDQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWEGYAALKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGMDE-PM 198 (830)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCceEEEEecCCcchHHHHHHHHHHHhhcCCCcccCCcccccchhHHHHHHhcCCCC-CC
Confidence 99999999999999874 6889988777777888888888887 58999998777666322 2333321 12
Q ss_pred CCccccccCCEEEEEcCChhhhhhHHHHHHHHHHH-hCCCEEEEEccCCCCCccccc------cCCCHH-----------
Q 004627 425 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR-ANNAKVGYIGPATDLNYDHQH------LGTGPK----------- 486 (741)
Q Consensus 425 ~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~-~~gakiivIdp~~~~t~~~~~------lG~d~~----------- 486 (741)
.++.|+++||+||+||+||.+++|+...++.+++. ++|+|||+|||+.+.|+..++ +|+|.+
T Consensus 199 ~~~~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~l~irPGTD~AL~lam~~~ii~ 278 (830)
T TIGR01706 199 GCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIGIIFKPQTDLAILNYIANYIIQ 278 (830)
T ss_pred CCHhHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCeeeccCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999987653 479999999999999976554 244421
Q ss_pred ---------------------------------------------------------------HHHHHH----cCHHHHH
Q 004627 487 ---------------------------------------------------------------TLLEIA----EGRHPFF 499 (741)
Q Consensus 487 ---------------------------------------------------------------~l~~i~----~gi~~lA 499 (741)
++++++ +.|+++|
T Consensus 279 ~~~~D~~Fv~~~t~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~tpe~aa~itGVpa~~I~~lA 358 (830)
T TIGR01706 279 NNAVNMDFVNKHTVFKTGATDIGYGLRPDHPLEKAAKNADDPAATSLSTFEEFKKFVAPYTLEKTSELSGVPKAKLEQLA 358 (830)
T ss_pred CCCccHHHHHHHhccccccccccccccccccccccccccccccccccCcHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHH
Confidence 122222 2389999
Q ss_pred HHHhcCC-CcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhh-hhcC---------------
Q 004627 500 SAISNAK-NPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLG--------------- 562 (741)
Q Consensus 500 ~~l~~a~-~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~-~~~g--------------- 562 (741)
+.|++++ +++|++|.|+.+|.+|.+..+++.+|+++||++|++|+|++.+.+..|..|. .++|
T Consensus 359 ~~~a~~~~~~~i~~g~G~~~~~~g~~~~rai~~L~altGnig~~Ggg~~~~~g~~~~~g~~~~~g~~~~~~p~~~~~~~~ 438 (830)
T TIGR01706 359 ELYADPNRKVMSLWTMGFNQHTRGVWANNMVYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNP 438 (830)
T ss_pred HHHhccCCCEEEEEcchhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCcCcCcCCcCcCcchhhhhhccccCCCCcCCCCH
Confidence 9999976 4667799999999999999999999999999999999987766554443321 1100
Q ss_pred ---------------CCC---CCC-------CCccCceEEEEeccCccC---------ccCCC-CCCeEEEEcccCCccc
Q 004627 563 ---------------LVP---ESS-------NSIESAKFVYLMGADDVD---------LEKLP-NDAFVVYQGHHGDHGV 607 (741)
Q Consensus 563 ---------------~~p---~~~-------~~~~~ik~l~l~g~np~~---------~~al~-k~~fvV~~d~~~~eta 607 (741)
..| +.. ...++||++|++|.||+. .+++. +++|+|++|+|+|+|+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~~a~~~~~df~Vv~D~f~teTa 518 (830)
T TIGR01706 439 KHREIAEKIWKIPAGTIPEKPGLHAVAQDRALKDGKLNFYWVQVNNNMQAGPNINEERLPGYRNPDNFIVVSDAYPTVTA 518 (830)
T ss_pred HHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEEccCChhhcCccchHHHHHHHhCCCCeEEEecCccCcch
Confidence 011 100 135789999999999953 12344 4679999999999999
Q ss_pred cccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 004627 608 YRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 666 (741)
Q Consensus 608 ~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y 666 (741)
+|||||||+++|+|++|++.|.++++|..+++|+|+||+|+||||+.+||++||.+..|
T Consensus 519 ~~ADiVLPa~t~~E~~~~~~~~~r~~~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~ 577 (830)
T TIGR01706 519 LAADLILPSAMWVEKEGAYGNAERRTQVWHQQVLAPGEARSDLWQLVEFSKRFKTEEVW 577 (830)
T ss_pred hhCCEEeCCCcccccCceEEcCCceEEeeccccCCCcccchHHHHHHHHHHHhCcCccC
Confidence 99999999999999999999999999999999999999999999999999999987544
No 27
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=100.00 E-value=1.3e-58 Score=556.97 Aligned_cols=384 Identities=18% Similarity=0.185 Sum_probs=314.2
Q ss_pred ceeeeeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC------CCCeee
Q 004627 282 ELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA------DGRFKA 354 (741)
Q Consensus 282 el~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g------~g~~~~ 354 (741)
+.++++|+|++|+.||++.++|+||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|.+ +|+|++
T Consensus 39 ~~~~~~s~C~~C~~~C~l~~~v~dg~i~~v~g~~~~p~n~G~lC~kG~~~~~~~y~~~Rl~~Pl~R~~rG~~~~~g~~~~ 118 (830)
T PRK13532 39 AIKWDKAPCRFCGTGCGVLVGTKDGRVVATQGDPDAPVNRGLNCIKGYFLSKIMYGKDRLTQPLLRMKDGKYDKEGEFTP 118 (830)
T ss_pred CceEEeEECCCCcCCCCeEEEEECCEEEEEECCCCCCCCCCccCccccchhhccCCcccccCCEEecCCCCcccCCCeEE
Confidence 4667899999999999999999999999999999999999999999999999998 999999999964 689999
Q ss_pred cCHHHHHHHHHHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHH-HcCCCcccCCCCcchhh------hhhhcCccc
Q 004627 355 VNWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQSN------ADLRSGYIM 423 (741)
Q Consensus 355 iSWdeAl~~iA~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~-~lGs~~~~~~~~~~~~~------~~~~~~~~~ 423 (741)
|||||||++||++|++++ +++|+++.++..+.|+.+++++|++ .+|++++++..+.|... ..+|... .
T Consensus 119 isWdeAl~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~G~~~-~ 197 (830)
T PRK13532 119 VSWDQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEGYAASKLMKAGFRSNNIDPNARHCMASAVVGFMRTFGIDE-P 197 (830)
T ss_pred ecHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCcchHHHHHHHHHHHhccCCCcccCCccccchhHHHHHHHhhCCCC-C
Confidence 999999999999998863 6889988878778888888899997 58999998776666322 2233221 1
Q ss_pred CCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHH-hCCCEEEEEccCCCCCccccc------cCCCHH----------
Q 004627 424 NTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR-ANNAKVGYIGPATDLNYDHQH------LGTGPK---------- 486 (741)
Q Consensus 424 ~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~-~~gakiivIdp~~~~t~~~~~------lG~d~~---------- 486 (741)
..++.|+++||+||+||+||.+++|+...++.+++. ++|+|||+|||+.+.|+..++ +|+|..
T Consensus 198 ~~~~~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~irPGtD~al~~am~~~ii 277 (830)
T PRK13532 198 MGCYDDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGIIFTPQTDLAILNYIANYII 277 (830)
T ss_pred CCCHHHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeeccCCCCcHHHHHHHHHHHH
Confidence 246789999999999999999999999889977643 479999999999999976554 144421
Q ss_pred ----------------------------------------------------------------HHHHHH----cCHHHH
Q 004627 487 ----------------------------------------------------------------TLLEIA----EGRHPF 498 (741)
Q Consensus 487 ----------------------------------------------------------------~l~~i~----~gi~~l 498 (741)
++++++ +.|+++
T Consensus 278 ~~~~~D~~Fv~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~~f~~l~~~~~~~tpe~aa~itGV~a~~I~~l 357 (830)
T PRK13532 278 QNNAVNWDFVNKHTNFRKGATDIGYGLRPTHPLEKAAKNPGTAGKSEPISFEEFKKFVAPYTLEKTAKMSGVPKEQLEQL 357 (830)
T ss_pred HCCcccHHHHHHHhccccccccccccccccccccccccccccccccccchHHHHHHHHHhCCHHHHHHHHCcCHHHHHHH
Confidence 122222 238999
Q ss_pred HHHHhcCCC-cEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhh-hhcC--------------
Q 004627 499 FSAISNAKN-PVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLG-------------- 562 (741)
Q Consensus 499 A~~l~~a~~-~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~-~~~g-------------- 562 (741)
|+.|+++++ ++|.+|.|+.+|.+|.+..+++..|++++|++|++|+|+..+.+..|..|. .++|
T Consensus 358 A~~~a~~~~~~~i~~g~G~~~~~~g~~~~~ai~~L~altGnig~~Ggg~~~~~g~~~~~g~~~~~~~~~~~~p~~~~~~~ 437 (830)
T PRK13532 358 AKLYADPNRKVVSFWTMGFNQHTRGVWANNLVYNIHLLTGKISTPGNGPFSLTGQPSACGTAREVGTFSHRLPADMVVTN 437 (830)
T ss_pred HHHHhccCCcEEEEEccccccchhHHHHHHHHHHHHHHhCCCCCCCCCcCCCCCCcccccchhhhhhCcccCCCCCcCCC
Confidence 999998774 567789999999999999999999999999999999887655443332221 0111
Q ss_pred ----------------CCC---CCC-------CCccCceEEEEeccCccC---------ccCCCCC-CeEEEEcccCCcc
Q 004627 563 ----------------LVP---ESS-------NSIESAKFVYLMGADDVD---------LEKLPND-AFVVYQGHHGDHG 606 (741)
Q Consensus 563 ----------------~~p---~~~-------~~~~~ik~l~l~g~np~~---------~~al~k~-~fvV~~d~~~~et 606 (741)
..| +.. ...++||++|++|.||+. .+++.+. +|+|++|+|+|+|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~~~p~~~~~~~~al~~~~~f~Vv~D~~~teT 517 (830)
T PRK13532 438 PKHREIAEKIWKLPEGTIPPKPGYHAVAQDRMLKDGKLNAYWVMCNNNMQAGPNINEERLPGWRNPDNFIVVSDPYPTVS 517 (830)
T ss_pred HHHHHHHHHHhCCCcccCCCCCCCCHHHHHHHHhCCCceEEEEcCCCccccCcCccHHHHHHHhCCCCCEEEECCcCCcc
Confidence 111 000 035789999999999952 2456665 6999999999999
Q ss_pred ccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 004627 607 VYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 666 (741)
Q Consensus 607 a~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y 666 (741)
++|||||||+++|+|++|++.|.++++|..+++|+|+||+|+||+|+.+||++||++..|
T Consensus 518 a~~ADiVLPaat~~E~~~~~~~~~~~~~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~ 577 (830)
T PRK13532 518 ALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVKAPGEAKSDLWQLVEFSKRFKTEEVW 577 (830)
T ss_pred hhhCCEEeCCCcccccCcceecccceEEEecccCCCCcccchHHHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999999999999999999999999999999986444
No 28
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=2.4e-58 Score=532.75 Aligned_cols=409 Identities=18% Similarity=0.160 Sum_probs=318.1
Q ss_pred eecCC-CCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC---CCCeeecCHHHHH
Q 004627 287 ETIDV-TDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKAVNWRDAL 361 (741)
Q Consensus 287 ~siC~-~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~~~iSWdeAl 361 (741)
+|+|+ +|+.||++.++++||+|+||+|+++++.|.+++|.||++.++.+| |+||++||+|+| +|+|++|||||||
T Consensus 1 ~~~C~~~C~~~C~i~v~v~dG~iv~v~g~~~~~~~~~~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~~~iSWdEAl 80 (567)
T cd02765 1 YTACPPNCGGRCPLKCHVRDGKIVKVEPNEWPDKTYKRGCTRGLSHLQRVYSPDRLKYPMKRVGERGEGKFERITWDEAL 80 (567)
T ss_pred CCccCCccccCCceEEEEECCEEEEEeCCCCCCCCCCCcCcccchhhhhhcChhhhcCCeeecCCCCCCcEEEecHHHHH
Confidence 37897 599999999999999999999997777799999999999999998 999999999974 6899999999999
Q ss_pred HHHHHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcc-----hhhhhhhcCc-ccCCCccccc
Q 004627 362 AVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGA-----QSNADLRSGY-IMNTSISGLE 431 (741)
Q Consensus 362 ~~iA~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~di~ 431 (741)
++||++|++++ +++|+++.|+....+..++..+++...+. .+.....+ +....+|... ....++.|++
T Consensus 81 ~~ia~kl~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~D~~ 158 (567)
T cd02765 81 DTIADKLTEAKREYGGKSILWMSSSGDGAILSYLRLALLGGGLQ--DALTYGIDTGVGQGFNRVTGGGFMPPTNEITDWV 158 (567)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCCCcccccHHHHHHhhCCCC--cccccCcccccccCccceeccccccCCCCHhHHh
Confidence 99999999875 57898888765443433433344433332 22211111 1111222211 1135689999
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCH--------------------
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGP-------------------- 485 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~-------------------- 485 (741)
+||+||+||+||.+++|...+++++++ ++|+|||+|||+.+.|+..++ +|+|.
T Consensus 159 ~ad~il~~G~Np~~s~~~~~~~~~~a~-~~GakliviDPr~s~ta~~Ad~~l~irPGTD~al~~am~~~ii~~~l~D~~F 237 (567)
T cd02765 159 NAKTIIIWGSNILETQFQDAEFFLDAR-ENGAKIVVIDPVYSTTAAKADQWVPIRPGTDPALALGMINYILEHNWYDEAF 237 (567)
T ss_pred cCcEEEEECCChHHccchhHHHHHHHH-HcCCeEEEECCCCCcchhhcCEEeccCCCchHHHHHHHHHHHHhcCcccHHH
Confidence 999999999999999999888888875 499999999999999976654 13332
Q ss_pred --------------------------------------------------------------------------------
Q 004627 486 -------------------------------------------------------------------------------- 485 (741)
Q Consensus 486 -------------------------------------------------------------------------------- 485 (741)
T Consensus 238 i~~~t~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~g~~~~~g~~~~~~f~~~~~~~~~~ 317 (567)
T cd02765 238 LKSNTSAPFLVREDNGTLLRQADVTATPAEDGYVVWDTNSDSPEPVAATNINPALEGEYTINGVKVHTVLTALREQAASY 317 (567)
T ss_pred HHhcCCCceEEEccCCcEeehhhccccCccCceEEEECCCCCcccCCCCCCCcceeeeEEECCEEEeEHHHHHHHHhhcC
Confidence
Q ss_pred --HHHHHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhh
Q 004627 486 --KTLLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAAL 559 (741)
Q Consensus 486 --~~l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~ 559 (741)
+++++++ +.|+++|++|+++++++|++|.|+.++.+|.+..+++..|++++|++|++|+|++
T Consensus 318 tpe~aa~itGV~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~ra~~~L~~ltG~ig~~Ggg~~------------ 385 (567)
T cd02765 318 PPKAAAEICGLEEAIIETLAEWYATGKPSGIWGFGGVDRYYHSHVFGRTAAILAALTGNIGRVGGGVG------------ 385 (567)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEecccchhhhhhchHHHHHHHHHHHHhCcCCCCCCCcc------------
Confidence 2233332 2389999999999988999999999999999999999999999999999987642
Q ss_pred hcCCCCCCCCCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCC-
Q 004627 560 DLGLVPESSNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTE- 630 (741)
Q Consensus 560 ~~g~~p~~~~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~e- 630 (741)
.+|++|++++||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|+++|.+
T Consensus 386 -------------~ik~l~~~~~Np~~~~p~~~~~~~al~kldf~V~~d~~~teTa~~ADvvLP~~~~~E~~~~~~~~~~ 452 (567)
T cd02765 386 -------------QIKFMYFMGSNFLGNQPDRDRWLKVMKNLDFIVVVDIFHTPTVRYADIVLPAAHWFEVEDLLVRYTT 452 (567)
T ss_pred -------------ceeEEEEecCchhhccchHHHHHHHHhcCCEEEEEecccCcchhhccEEecCCcccccccccccccC
Confidence 18999999999952 46789999999999999999999999999999999999999886
Q ss_pred -CeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC-CCHHHHHHHHHH-hCCCC--CCccccCCCCCCCC-Ccccccc
Q 004627 631 -GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY-DTIGGIRSRIRT-VAPNL--LHVDEREPATLGPS-LKPEIKS 704 (741)
Q Consensus 631 -g~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y-~~~~~v~~~~~~-~~p~~--~~~~~l~~~~~~~~-~~~~~~~ 704 (741)
+++|..+|+|+|+||+|+||+|+.+||++||....| .+.+++++++.+ ..|.+ .+|+++.+.+.... .....+.
T Consensus 453 ~~~~~~~~~~i~p~gear~d~~I~~~La~~lG~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~l~~~g~~~~~~~~~~~~ 532 (567)
T cd02765 453 HPHVLLQQKAIEPLFESKSDFEIEKGLAERLGLGDYFPKTPEDYVRAFMNSDDPALDGITWEALKEEGIIMRLATPEDPY 532 (567)
T ss_pred CceEEEeccccCCCCCCccHHHHHHHHHHHhCCccCCCCCHHHHHHHHHcCCCccccCCCHHHHHhcCceeccCCCCCce
Confidence 789999999999999999999999999999998655 577888877643 33433 57887776553210 0000111
Q ss_pred -ccCCCCcc--cccccccccch
Q 004627 705 -EMDLTPFG--SAVENFYMTDS 723 (741)
Q Consensus 705 -~~~~~~~~--~~~~~fY~~d~ 723 (741)
.+....|. +++.+||.+..
T Consensus 533 ~~~~~~~f~T~sGk~e~~~~~~ 554 (567)
T cd02765 533 VAYLDQKFGTPSGKLEFYNEAA 554 (567)
T ss_pred ecccCCCcCCCCccEEEEhhhh
Confidence 12223354 67888988753
No 29
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=2.4e-58 Score=538.61 Aligned_cols=433 Identities=16% Similarity=0.149 Sum_probs=327.1
Q ss_pred ecCCC-CCCCCCceEeeeCCEEEEEcCCCCCCCC----ccccccccccccccCC-CCCCCCcEEeCC---CCCeeecCHH
Q 004627 288 TIDVT-DAVGSNIRIDSRGPEVMRILPRLNEDIN----EEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKAVNWR 358 (741)
Q Consensus 288 siC~~-C~~gC~i~v~vrdg~V~rI~p~~~~~~n----~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~~~iSWd 358 (741)
|+|++ |+.+|++.|+|+||+|+||+|++++|.| ++++|.||++.++.+| |+||++||+|+| +|+|++||||
T Consensus 2 ~~C~~~C~~~C~l~v~v~~G~i~~v~g~~~~p~~~g~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~~isWD 81 (617)
T cd02770 2 SACTVNCGGRCPLKAHVKDGVITRIETDDTGDDDPGFHQIRACLRGRSQRKRVYNPDRLKYPMKRVGKRGEGKFVRISWD 81 (617)
T ss_pred CccCCccCCCCceEEEEECCEEEEEeCCCCCCcccccCCCCcChhhhhhhhhhcChhHhcCCceecCcCCCCCeEEecHH
Confidence 78987 9999999999999999999999999875 5579999999999998 999999999974 6899999999
Q ss_pred HHHHHHHHHHHhcC----CCcEEEEECCC-CC--HHHHHHHHHHHHHcCCCcccCCCCcchh------hhhhhcCcccCC
Q 004627 359 DALAVVAEVMLQAK----PEEIVGIAGRL-SD--AESMMALKDFLNRMGSNNVWCEGTGAQS------NADLRSGYIMNT 425 (741)
Q Consensus 359 eAl~~iA~~Lk~i~----~~~i~~~~g~~-~~--~e~~~~~~~l~~~lGs~~~~~~~~~~~~------~~~~~~~~~~~~ 425 (741)
|||++||++|++++ +++|+++.|.. .+ .+....+.+|++.+|+.+ ....+.|.. ...+|... .+.
T Consensus 82 eAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~c~~~~~~~~~~~~G~~~-~~~ 159 (617)
T cd02770 82 EALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYL-NYYGTYSWAQITTATPYTYGAAA-SGS 159 (617)
T ss_pred HHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCcc-CCCCCccHhHHhhhhceEEecCC-CCC
Confidence 99999999999875 46787765532 22 233456788999998643 333344421 12233221 245
Q ss_pred CccccccCCEEEEEcCChhhhhhH---HHHHHHHHHHhCCCEEEEEccCCCCCcc-ccc------cCCCH----------
Q 004627 426 SISGLEKADCFLLVGTQPRVEAAM---VNARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTGP---------- 485 (741)
Q Consensus 426 ~~~di~~ad~Ill~G~Np~~~~p~---~~~rlr~a~~~~gakiivIdp~~~~t~~-~~~------lG~d~---------- 485 (741)
++.|+++||+||+||+||..+++. ...++++++ ++|+|||+|||+.+.|+. .++ +|+|.
T Consensus 160 ~~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~-~~G~klivIDPr~t~tA~~~AD~~i~irPGTD~AL~lam~~~i 238 (617)
T cd02770 160 SLDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAK-KAGAKFIVIDPRYTDTAVTLADEWIPIRPGTDAALVAAMAYVM 238 (617)
T ss_pred CHHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHH-HcCCeEEEECCCCCccccccCCEEECCCCCcHHHHHHHHHHHH
Confidence 789999999999999999999985 567787775 499999999999999985 444 24443
Q ss_pred -------------------------------------------------HHHHHHH----cCHHHHHHHHhcCCCcEEEE
Q 004627 486 -------------------------------------------------KTLLEIA----EGRHPFFSAISNAKNPVIIV 512 (741)
Q Consensus 486 -------------------------------------------------~~l~~i~----~gi~~lA~~l~~a~~~~Ii~ 512 (741)
+++++++ +.|+++|++|+++++++|++
T Consensus 239 i~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~~~~dg~~~tpe~a~~itGV~ae~I~~lA~~~a~~~~~~i~~ 318 (617)
T cd02770 239 ITENLHDQAFLDRYCVGFDAEHLPEGAPPNESYKDYVLGTGYDGTPKTPEWASEITGVPAETIRRLAREIATTKPAAILQ 318 (617)
T ss_pred HHCCCccHHHHHHhccCCCcccCcccCCcccchHHHhcCcccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCcEEEe
Confidence 2333333 23899999999999999999
Q ss_pred cCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhh-h--------------------hcCC-CCC----
Q 004627 513 GAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-L--------------------DLGL-VPE---- 566 (741)
Q Consensus 513 G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~-~--------------------~~g~-~p~---- 566 (741)
|+|++++.||.+..+++..|++++|++|++|+|++...+..+.... + ..|- .+.
T Consensus 319 g~g~~~~~~g~~~~~ai~~L~altGnig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (617)
T cd02770 319 GWGPQRHANGEQAARAIMMLAAMTGNVGIPGGNTGARPGGSAYNGAGLPAGKNPVKTSIPCFMWTDAIERGEEMTADDGG 398 (617)
T ss_pred cccHHHHhhhhHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCCCcccCCCCCCcccccccHHHHHHHHHCCCceeccCCC
Confidence 9999999999999999999999999999999887654332221100 0 0000 000
Q ss_pred ---CCCCccCceEEEEeccCcc-C--------ccCCC----CCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCC
Q 004627 567 ---SSNSIESAKFVYLMGADDV-D--------LEKLP----NDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTE 630 (741)
Q Consensus 567 ---~~~~~~~ik~l~l~g~np~-~--------~~al~----k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~e 630 (741)
......+||++|++++||+ . .++|. |++|+|++|+|+|+|+++||||||+++|+|++|++.+.+
T Consensus 399 ~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~kldf~Vv~D~~~teTa~~ADiVLPa~t~~E~~~~~~~~~ 478 (617)
T cd02770 399 VKGADKLKSNIKMIWNYAGNTLINQHSDDNNTTRALLDDESKCEFIVVIDNFMTPSARYADILLPDTTELEREDIVLTSN 478 (617)
T ss_pred cccccccCCCcEEEEECCCCchhhcCccHHHHHHHHhcccccCCEEEEeccccCchhhhhheecccCcHHhhcccccccc
Confidence 0001347999999999997 2 12333 569999999999999999999999999999999988766
Q ss_pred ----CeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHhC----CCCCCccccCCCCCCCCCc
Q 004627 631 ----GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRIRTVA----PNLLHVDEREPATLGPSLK 699 (741)
Q Consensus 631 ----g~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y---~~~~~v~~~~~~~~----p~~~~~~~l~~~~~~~~~~ 699 (741)
++++..+|+|+|+||+|+||+|+++||++||....| .+.+++++++.+.. +...+|++|.+.++.....
T Consensus 479 ~~~~~~~~~~~~~i~P~gear~d~~I~~~La~rlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e~l~~~g~~~~~~ 558 (617)
T cd02770 479 AGMMEYLIYSQKAIEPLYECKSDYEICAELAKRLGVEDQFTEGKTEQEWLEELYGQTRAKEPGLPTYEEFREKGIYRVPR 558 (617)
T ss_pred cCCCceEEeeccccCCCccCcCHHHHHHHHHHHhCCcccccCCCCHHHHHHHHHHHHHhccCCCCCHHHHHhcCCEEccC
Confidence 679999999999999999999999999999997433 58899998876432 2345888888766532111
Q ss_pred c--ccccc-c----CCCCcc--cccccccccch
Q 004627 700 P--EIKSE-M----DLTPFG--SAVENFYMTDS 723 (741)
Q Consensus 700 ~--~~~~~-~----~~~~~~--~~~~~fY~~d~ 723 (741)
. ..... + ...+|. |++.+||....
T Consensus 559 ~~~~~~~~~~~~~~~~~~f~T~SGKie~~s~~~ 591 (617)
T cd02770 559 ALPFVAFEDFREDPENNPLKTPSGKIEIYSKAL 591 (617)
T ss_pred CCCceeHHhHhhCCCCCCCCCCCeeEEEeehhH
Confidence 0 00000 1 112355 67888987754
No 30
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=100.00 E-value=4.6e-58 Score=531.41 Aligned_cols=388 Identities=15% Similarity=0.162 Sum_probs=303.8
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC---CCCeeecCHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKAVNWRDALA 362 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~~~iSWdeAl~ 362 (741)
.|+|.+|++||+|.|+++||+|+||+|+++||+|+|++|.||+++++.+| |+||++||+|++ +|+|++|||||||+
T Consensus 1 ~T~C~~C~~gCgi~v~v~dG~v~~I~gn~~~p~n~G~lC~KG~a~~~~vyspdRL~~PL~R~g~RG~g~f~~ISWDEAld 80 (679)
T cd02763 1 TTTCYMCACRCGIRVHLRDGKVRYIKGNPDHPLNKGVICAKGSSGIMKQYSPARLTKPLLRKGPRGSGQFEEIEWEEAFS 80 (679)
T ss_pred CccCCCCcCCCCeEEEEECCEEEEEEcCCCCCccccccChhhhhHHHhhcCcchhcCCEEeccCCCCCceEEeCHHHHHH
Confidence 48999999999999999999999999999999999999999999999998 999999999973 68999999999999
Q ss_pred HHHHHHHhcC---CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhh------hhhhcCcccCCCccccccC
Q 004627 363 VVAEVMLQAK---PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKA 433 (741)
Q Consensus 363 ~iA~~Lk~i~---~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~a 433 (741)
+||++|++++ +++++++.|.... .++.++|++.+|++|++.+.++|... ..+|..++ ..+..|+++|
T Consensus 81 ~IA~kL~~i~~~gp~~ia~~~g~~~~---~~l~~~f~~~lGt~n~~~~~~~C~~~~~~a~~~~~G~~~~-~~~~~D~~~A 156 (679)
T cd02763 81 IATKRLKAARATDPKKFAFFTGRDQM---QALTGWFAGQFGTPNYAAHGGFCSVNMAAGGLYSIGGSFW-EFGGPDLEHT 156 (679)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCccH---HHHHHHHHHhcCCCCcCCCCCcchHHHHHHHHHhhCCCCC-CCChhHHHhC
Confidence 9999999874 5789888876532 45678899999999998888776332 22333222 2457899999
Q ss_pred CEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCH----------------------
Q 004627 434 DCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGP---------------------- 485 (741)
Q Consensus 434 d~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~---------------------- 485 (741)
|+||+||+|+..+...+..++++++ ++|+|||+|||+.+.|+..++ +|+|.
T Consensus 157 d~Ivl~G~n~~~~~~p~~~~i~~ak-~~GaKlIvIDPr~t~ta~~AD~wl~irPGTD~aL~lal~~~Li~~g~~D~~Fl~ 235 (679)
T cd02763 157 KYFMMIGVAEDHHSNPFKIGIQKLK-RRGGKFVAVNPVRTGYAAIADEWVPIKPGTDGAFILALAHELLKAGLIDWEFLK 235 (679)
T ss_pred CEEEEECCCCcccCchHHHHHHHHH-hCCCcEEEEcCcCCcchHhhCeecCcCCCcHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 9999999998765444566787775 589999999999999976654 25543
Q ss_pred -------------HHHHHHH----cCHHHHHHHHhcCC------------------------Cc-EEEEcCCcccCCCHH
Q 004627 486 -------------KTLLEIA----EGRHPFFSAISNAK------------------------NP-VIIVGAGLFERKDKD 523 (741)
Q Consensus 486 -------------~~l~~i~----~gi~~lA~~l~~a~------------------------~~-~Ii~G~g~~~~~~g~ 523 (741)
+++++++ +.|+++|++|++++ ++ ++..+.|+.+|.+|.
T Consensus 236 ~~t~g~~l~~ytpe~aa~itGV~ae~I~~lA~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~pv~~~~~~G~~~~~nG~ 315 (679)
T cd02763 236 RYTNAAELVDYTPEWVEKITGIPADTIRRIAKELGVTARDQPIELPIAWTDVWGRKHEKITGRPVSFHAMRGIAAHSNGF 315 (679)
T ss_pred HHcCcHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcccccccccccccccccccccccccCcceEEeccccccccccHH
Confidence 3333333 23899999999753 34 444567999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCcceee--cC-------chhhhh-hhhh--------cCCC---------------------
Q 004627 524 AIFSTVEAIAKKGNVIRPDWNGLNV--LL-------LNAAQA-AALD--------LGLV--------------------- 564 (741)
Q Consensus 524 ~~~~ai~~L~~~~G~~~~~g~g~~~--l~-------~~~~~~-g~~~--------~g~~--------------------- 564 (741)
+..+++.+|+++||+++++|+++.. .+ ...+.. +..+ .|+.
T Consensus 316 ~~~rAi~~L~aLtGnig~pGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~r~~~~~ 395 (679)
T cd02763 316 QTIRALFVLMMLLGTIDRPGGFRHKPPYPRHIPPLPKPPKIPSADKPFTPLYGPPLGWPASPDDLLVDEDGNPLRIDKAY 395 (679)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCCCCcccccccccccccccccccccccccccccCCCCchhccccccccchhhcccc
Confidence 9999999999999999999864321 10 000000 0000 0110
Q ss_pred ----CCCC-------------CCccCceEEEEeccCcc--C-------ccCCC--------CCCeEEEEcccCCcccccc
Q 004627 565 ----PESS-------------NSIESAKFVYLMGADDV--D-------LEKLP--------NDAFVVYQGHHGDHGVYRA 610 (741)
Q Consensus 565 ----p~~~-------------~~~~~ik~l~l~g~np~--~-------~~al~--------k~~fvV~~d~~~~eta~~A 610 (741)
|... ....+||++|++++||+ + .++|+ |++|+|++|+|+|||++||
T Consensus 396 ~~~~p~~~~gl~~~~i~~~~~g~py~Ikal~i~~~Np~~~s~pn~~~v~eaL~~~d~~~~~kl~flVv~D~f~teTa~~A 475 (679)
T cd02763 396 SWEYPLAAHGCMQNVITNAWRGDPYPIDTLMIYMANMAWNSSMNTPEVREMLTDKDASGNYKIPFIIVCDAFYSEMVAFA 475 (679)
T ss_pred ccccCccccchHHHHHHHhhcCCCCCceEEEEcCCCcccccCCCHHHHHHHHhccccccccccCeEEEEeCCCChhhhhC
Confidence 0000 01235999999999996 1 35666 6889999999999999999
Q ss_pred ceeccCCCCCCCCceEEcCCCeeE--------eeccccCCCCCCccHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHh
Q 004627 611 NVILPASAFSEKEGTYENTEGCTQ--------QTLPAVPTVGDARDDWKIIRALSEVAGMR-LPYDTIGGIRSRIRTV 679 (741)
Q Consensus 611 DvVLP~a~~~Ek~gt~~n~eg~vq--------~~~~av~P~gear~d~~Il~~La~~lg~~-~~y~~~~~v~~~~~~~ 679 (741)
|||||+++|+|++|++++.+++++ ..+|+|+|+||+|+||+|+.+||++||++ +.+.+.++++++..+.
T Consensus 476 DvVLP~~t~lEr~~~~~~~~r~~~~~~~~~~~~r~pvi~P~gear~d~eI~~~LA~rLG~~~f~~~~~~~~~~~~~~~ 553 (679)
T cd02763 476 DLVLPDTTYLERHDAMSLLDRPISEADGPVDAIRVPIVEPKGDVKPFQEVLIELGTRLGLPGFTNEDGTRKYRDYPDF 553 (679)
T ss_pred CEEecCCCccccccccccccccccccccchhhhcccccCCCcCCcCHHHHHHHHHHHhCCCccccCChhHHhhhHHHH
Confidence 999999999999999988775433 47899999999999999999999999998 4456888888776543
No 31
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=100.00 E-value=2.1e-58 Score=529.63 Aligned_cols=403 Identities=14% Similarity=0.107 Sum_probs=312.4
Q ss_pred cccceeeeeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCH
Q 004627 279 RNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNW 357 (741)
Q Consensus 279 r~wel~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSW 357 (741)
...+...+.|+|++ +.||++.++++||+|+||+|+++||+|+|++|+||+++++.+| |+||++||+|+|+|+|++|||
T Consensus 39 ~g~~~~~~~s~C~~-g~~C~l~v~v~dGrv~~v~g~~~~p~n~G~lC~kg~~~~~~~y~pdRl~~Pl~R~g~g~~~~iSW 117 (524)
T cd02764 39 PGETVYYATSLVPA-GEGQGVLVKTVDGRPIKIEGNPDHPASLGGTSARAQASVLSLYDPDRAQGPLRRGIDGAYVASDW 117 (524)
T ss_pred CCccceeEEEecCC-CcceeEEEEEECCeEEEeeCCCCCCcCCCCcCHHHHHHHHhhcChHhhhhhHhcCCCCCeeeCCH
Confidence 34566778899998 9999999999999999999999999999999999999999998 999999999998899999999
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEECCCCCHHHHHHHHHHHHH-cCCCcccCCCCcc-----hhhhhhhcCcccCCCcccc
Q 004627 358 RDALAVVAEVMLQAK-PEEIVGIAGRLSDAESMMALKDFLNR-MGSNNVWCEGTGA-----QSNADLRSGYIMNTSISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~-~~~i~~~~g~~~~~e~~~~~~~l~~~-lGs~~~~~~~~~~-----~~~~~~~~~~~~~~~~~di 430 (741)
||||++||++|++++ +++++++.|+..+.+..+++++|++. .|++++++..... +....||.. ..+..|+
T Consensus 118 deAld~ia~~l~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~---~~~~~D~ 194 (524)
T cd02764 118 ADFDAKVAEQLKAVKDGGKLAVLSGNVNSPTTEALIGDFLKKYPGAKHVVYDPLSAEDVNEAWQASFGKD---VVPGYDF 194 (524)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEeCCCCCchHHHHHHHHHHhCCCCceeeECCCChHHHHHHHHHHcCCC---CCCCcCh
Confidence 999999999999987 67888888887777777888999995 5677765543221 111223322 2357899
Q ss_pred ccCCEEEEEcCChhhhhh--HHHHHHHHHHHhCC-----CEEEEEccCCCCCccccc------cCCCHHHHH--------
Q 004627 431 EKADCFLLVGTQPRVEAA--MVNARIRKTVRANN-----AKVGYIGPATDLNYDHQH------LGTGPKTLL-------- 489 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p--~~~~rlr~a~~~~g-----akiivIdp~~~~t~~~~~------lG~d~~~l~-------- 489 (741)
++||+||+||+||.++++ +...+....++++| .|||+|||+.+.|+..++ +|+|...+.
T Consensus 195 ~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPGtD~al~lam~~~ii~ 274 (524)
T cd02764 195 DKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAFALGLAHKLIK 274 (524)
T ss_pred hHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcccHHHHHHHHHHHHhh
Confidence 999999999999999964 33434332233344 499999999999987765 366654321
Q ss_pred ------------------------HHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCC
Q 004627 490 ------------------------EIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 541 (741)
Q Consensus 490 ------------------------~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~ 541 (741)
+++ +.|+++|+.|+++++++|++|+++.++. |.+..+++..|++++|++|+
T Consensus 275 ~~~~d~d~~f~~~~~~~~tpe~aa~itgv~~~~I~~lA~~~a~~~~~~i~~G~g~~~~~-g~~~~~ai~~L~altG~~g~ 353 (524)
T cd02764 275 KGAGSSLPDFFRALNLAFKPAKVAELTVDLDKALAALAKALAAAGKSLVVAGSELSQTA-GADTQVAVNALNSLLGNDGK 353 (524)
T ss_pred ccccccchhhhhhhhcccCcccccccccchHHHHHHHHHHHHhcCCcEEEECCCCCccc-cHHHHHHHHHHHHHhCCCCc
Confidence 111 1278999999999999999999999877 88999999999999999987
Q ss_pred CCcceeecCchhhhhhhhhcCCCCCC---C-CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccc
Q 004627 542 DWNGLNVLLLNAAQAAALDLGLVPES---S-NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYR 609 (741)
Q Consensus 542 ~g~g~~~l~~~~~~~g~~~~g~~p~~---~-~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ 609 (741)
++........ +....+ .+.. + ...++||++|++|+||+. .++|++++|+|++|+|+|+|++|
T Consensus 354 ~~~~~~~~~~-----~~~~~~-~~~~~l~~~i~~g~ik~l~v~~~Np~~~~p~~~~~~~al~k~df~Vv~d~~~teTa~~ 427 (524)
T cd02764 354 TVDHARPIKG-----GELGNQ-QDLKALASRINAGKVSALLVYDVNPVYDLPQGLGFAKALEKVPLSVSFGDRLDETAML 427 (524)
T ss_pred cccCCCCccc-----ccccch-HHHHHHHHHHHcCCccEEEEeCCCccccCCCcHHHHHHHhcCCeEEEecCCCChhHHh
Confidence 5432211000 000000 0000 0 035789999999999953 46789999999999999999999
Q ss_pred cceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccc
Q 004627 610 ANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDD-WKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDE 688 (741)
Q Consensus 610 ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d-~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~~~~~~ 688 (741)
||||||+++|+|++|+++|.+|++|..+|+|+|+||+|+| |+|+++||++||....+.+.+++..+ ... -.+|++
T Consensus 428 ADvVLPaat~~E~~g~~~~~~~~~~~~~~~i~P~gear~d~~~i~~~La~~lg~~~~~~~~~~~~~~---~~~-~~~~~~ 503 (524)
T cd02764 428 CDWVAPMSHGLESWGDAETPDGTYSICQPVIAPLFDTRSAQESLLLALGGSLGGYEKLRRYTSWIKA---AIG-DRSWEQ 503 (524)
T ss_pred cCEeccCCCccccccCccccCceEEEeccccccccCCCCcHHHHHHHhccCCCHHHHHHHHHHHhhc---cch-hhHHHH
Confidence 9999999999999999999999999999999999999999 99999999999986433332222222 111 125777
Q ss_pred cCCCCCCC
Q 004627 689 REPATLGP 696 (741)
Q Consensus 689 l~~~~~~~ 696 (741)
+.+.++..
T Consensus 504 l~~~g~~~ 511 (524)
T cd02764 504 ALRDGVAA 511 (524)
T ss_pred HHhhcccc
Confidence 77656543
No 32
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=100.00 E-value=7e-57 Score=538.78 Aligned_cols=388 Identities=14% Similarity=0.152 Sum_probs=305.5
Q ss_pred eeeeeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC---CCCeeecCHH
Q 004627 283 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFKAVNWR 358 (741)
Q Consensus 283 l~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~~~iSWd 358 (741)
.+.++|+|++|+.+|++.++++||+|+||+|++++|+|+|++|.||++.++.+| |+||++||+|+| +|+|++||||
T Consensus 41 ~~~~~t~C~~C~~~C~l~~~v~~G~iv~v~g~~~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~~~rg~g~~~~iSWd 120 (759)
T PRK15488 41 TKLTPSICEMCSTRCPIEARVVNGKNVFIQGNPKAKSFGTKVCARGGSGHSLLYDPQRIVKPLKRVGERGEGKWQEISWD 120 (759)
T ss_pred ceEEccCCCCccCCCceEEEEECCEEEEeECCCCCCCCCCccCccchhHHHhhcCcchhccceeecCCCCCCCeEEeCHH
Confidence 578999999999999999999999999999999999999999999999999998 999999999974 6899999999
Q ss_pred HHHHHHHHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccC-CCccccccC
Q 004627 359 DALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMN-TSISGLEKA 433 (741)
Q Consensus 359 eAl~~iA~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~-~~~~di~~a 433 (741)
|||++||++|++++ +++|+++.+.. +.+ .++.+|++.+|++|++.+.+.|......+....+| ....|+++|
T Consensus 121 EAl~~ia~~l~~i~~~~G~~~i~~~~~~~-~~~--~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~D~~~a 197 (759)
T PRK15488 121 EAYQEIAAKLNAIKQQHGPESVAFSSKSG-SLS--SHLFHLATAFGSPNTFTHASTCPAGYAIAAKVMFGGKLKRDLANS 197 (759)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeecCCC-cHH--HHHHHHHHHcCCCCCCCccccccchhhhhHHhhcCCCccCCHhhC
Confidence 99999999999875 47887554322 222 35678999999999988877764333222222333 346899999
Q ss_pred CEEEEEcCChhhhhhHHH-HHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHHH------------------
Q 004627 434 DCFLLVGTQPRVEAAMVN-ARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL------------------ 488 (741)
Q Consensus 434 d~Ill~G~Np~~~~p~~~-~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~l------------------ 488 (741)
|+||+||+||.+++|+.. ++++++++++|+|||+|||+.+.|+..++ +|+|...+
T Consensus 198 d~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~PGtD~al~~al~~~ii~~~~~D~~fi 277 (759)
T PRK15488 198 KYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIRPGTDLAVVLALCHVLIEENLYDKAFV 277 (759)
T ss_pred cEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccCCCcHHHHHHHHHHHHHHcCcccHHHH
Confidence 999999999999988654 55778765799999999999999987765 26654321
Q ss_pred ----------------------HHHH----cCHHHHHHHHhcCCCcE-EEEcCCcccCCCHHHHHHHHHHHHHHcCCCCC
Q 004627 489 ----------------------LEIA----EGRHPFFSAISNAKNPV-IIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 541 (741)
Q Consensus 489 ----------------------~~i~----~gi~~lA~~l~~a~~~~-Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~ 541 (741)
++++ +.|+++|++|+++++.+ +.+|.+..++.+|.++.+++..|++++|++++
T Consensus 278 ~~~t~gf~~~~~~~~~~t~e~~a~~~Gv~~~~I~~lA~~~a~~~~~~v~~~g~g~~~~~~g~~~~~ai~~L~~l~G~ig~ 357 (759)
T PRK15488 278 ERYTSGFEELAASVKEYTPEWAEAISDVPADDIRRIARELAAAAPHAIVDFGHRATFTPEEFDMRRAIFAANVLLGNIER 357 (759)
T ss_pred HHHHhHHHHHHHHHhccCHHHHHHHhCcCHHHHHHHHHHHHhhCCeEEEecCCCceecCccHHHHHHHHHHHHHhCcCCC
Confidence 2222 12889999999766544 45788998888999999999999999999999
Q ss_pred CCcceee--------cCchhhhhhhhhcC--------------------CCCCC------------CCCccCceEEEEec
Q 004627 542 DWNGLNV--------LLLNAAQAAALDLG--------------------LVPES------------SNSIESAKFVYLMG 581 (741)
Q Consensus 542 ~g~g~~~--------l~~~~~~~g~~~~g--------------------~~p~~------------~~~~~~ik~l~l~g 581 (741)
+|+++.. +.+..+..+....+ +.+.. +...+++|++|++|
T Consensus 358 ~Gg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~g 437 (759)
T PRK15488 358 KGGLYFGKNASVYNKLAGEKVAPTLAKPGVKGMPKPTAKRIDLVGEQFKYIAAGGGVVQSIIDATLTQKPYQIKGWVMSR 437 (759)
T ss_pred CCCcccCCCcccccccCCcccCcccccCccccCCCccccccccccccccCCcccCchHHHHHHHHhcCCCCCceEEEEeC
Confidence 9854311 11110000000000 00000 00234799999999
Q ss_pred cCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCC---eeEeeccccCCCCCCccHH
Q 004627 582 ADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG---CTQQTLPAVPTVGDARDDW 650 (741)
Q Consensus 582 ~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg---~vq~~~~av~P~gear~d~ 650 (741)
+||+. .++|++++|+|++|+++|+|+++||||||+++|+|++|+++|.+| +++..+|+|+|+||+|+||
T Consensus 438 ~Np~~~~p~~~~~~~al~k~df~V~~d~~~teTa~~ADvVLPa~t~~E~~g~~~~~~~~~~~~~~~~~~v~P~ge~~~d~ 517 (759)
T PRK15488 438 HNPMQTVTDRADVVKALKKLDLVVVCDVYLSESAAYADVVLPESTYLERDEEISDKSGKNPAYALRQRVVEPIGDTKPSW 517 (759)
T ss_pred CCccccCCCHHHHHHHHhcCCeEEEEeCCCCcchhhccEEecCCccccccccccccCCCCcceeeeccccCCCccCccHH
Confidence 99953 467899999999999999999999999999999999999998876 4777899999999999999
Q ss_pred HHHHHHHHHhCCC--CCCCCHHHHH
Q 004627 651 KIIRALSEVAGMR--LPYDTIGGIR 673 (741)
Q Consensus 651 ~Il~~La~~lg~~--~~y~~~~~v~ 673 (741)
+|+++||++||.. ++|.+.++++
T Consensus 518 ~I~~~La~~lg~~~~~~~~~~~~~~ 542 (759)
T PRK15488 518 QIFKELGEKMGLGQYYPWQDMETLQ 542 (759)
T ss_pred HHHHHHHHHhCCccccCCCCHHHHH
Confidence 9999999999987 4555666654
No 33
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=3.5e-57 Score=528.42 Aligned_cols=396 Identities=18% Similarity=0.217 Sum_probs=309.2
Q ss_pred CCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC-------------CCCeeecCHH
Q 004627 293 DAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-------------DGRFKAVNWR 358 (741)
Q Consensus 293 C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g-------------~g~~~~iSWd 358 (741)
|+.+|+|.|+|+||+|+||+|++++ +|++|.||++.++.+| |+||++||+|+| +|+|++||||
T Consensus 3 ~~~~C~i~v~v~dG~vvrv~g~~~~---~g~lC~kG~~~~~~~y~pdRl~~Pl~R~g~rg~~~~~~~~~g~g~~~~iSWD 79 (609)
T cd02751 3 ACHWGPFKAHVKDGVIVRVEPDDTD---QPRPCPRGRSVRDRVYSPDRIKYPMKRVGWLGNGPGSRELRGEGEFVRISWD 79 (609)
T ss_pred ccccCceEEEEECCEEEEEecCCCC---CcCcChhhhhhhhhccChhhhcCCeeeccccccCCcccccCCCCCEEEecHH
Confidence 3449999999999999999999988 9999999999999998 999999999974 6899999999
Q ss_pred HHHHHHHHHHHhcC----CCcEEEEECCCCC----HHHHHHHHHHHHHcCCCcccCCCCcchh------hhhhhcCcc--
Q 004627 359 DALAVVAEVMLQAK----PEEIVGIAGRLSD----AESMMALKDFLNRMGSNNVWCEGTGAQS------NADLRSGYI-- 422 (741)
Q Consensus 359 eAl~~iA~~Lk~i~----~~~i~~~~g~~~~----~e~~~~~~~l~~~lGs~~~~~~~~~~~~------~~~~~~~~~-- 422 (741)
|||++||++|++++ +++|+++.++..+ .+..+++++|++.+|+ ++++....|.. ...+|...+
T Consensus 80 EAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 158 (609)
T cd02751 80 EALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGG-YLGSYGTYSTGAAQVILPHVVGSDEVYE 158 (609)
T ss_pred HHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCC-CcCCCCCccHHHHHhHhhhEEccchhcc
Confidence 99999999999875 3677655443221 3445678999999987 34443444421 122332211
Q ss_pred cCCCcccccc-CCEEEEEcCChhhhhhHH--------HHHHHHHHHhCCCEEEEEccCCCCCcc-ccc------cCCCHH
Q 004627 423 MNTSISGLEK-ADCFLLVGTQPRVEAAMV--------NARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTGPK 486 (741)
Q Consensus 423 ~~~~~~di~~-ad~Ill~G~Np~~~~p~~--------~~rlr~a~~~~gakiivIdp~~~~t~~-~~~------lG~d~~ 486 (741)
.+.++.|+++ ||+||+||+||.+++|+. ..++++++ ++|+|||+|||+++.|+. .++ +|+|..
T Consensus 159 ~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~-~~GakiivIDPr~s~ta~~~AD~~l~irPGtD~a 237 (609)
T cd02751 159 QGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAK-DAGVRFICIDPRYTDTAAVLAAEWIPIRPGTDVA 237 (609)
T ss_pred CCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHH-HCCCeEEEECCCCCccccccCCEEECCCCCcHHH
Confidence 2456899986 999999999999999865 37888875 599999999999999986 444 266543
Q ss_pred H----------------------------------------------HHHHH----cCHHHHHHHHhcCCCcEEEEcCCc
Q 004627 487 T----------------------------------------------LLEIA----EGRHPFFSAISNAKNPVIIVGAGL 516 (741)
Q Consensus 487 ~----------------------------------------------l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~ 516 (741)
. +++++ +.|+++|+.|++ ++++|++|.|+
T Consensus 238 L~lam~~~ii~~~~~D~~fi~~~t~gfe~~~~~l~g~~dg~~~tpe~aa~itGv~~~~I~~lA~~~a~-~~~~i~~g~g~ 316 (609)
T cd02751 238 LMLAMAHTLITEDLHDQAFLARYTVGFDEFKDYLLGESDGVPKTPEWAAEITGVPAETIRALAREIAS-KRTMIAQGWGL 316 (609)
T ss_pred HHHHHHHHHHHCcchhHHHHHHHccCcHHHHHHhccCCCCccCCHHHHHHHHCcCHHHHHHHHHHHhc-CCcEEeccchH
Confidence 2 22222 228899999999 88999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCC---------CCCCC-------------------
Q 004627 517 FERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGL---------VPESS------------------- 568 (741)
Q Consensus 517 ~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~---------~p~~~------------------- 568 (741)
.++.||.++.+++..|++++|+++++|+|++...+..+..+..+++. .|...
T Consensus 317 ~~~~ng~~~~rai~~L~~ltGn~g~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 396 (609)
T cd02751 317 QRAHHGEQPAWMLVTLAAMLGQIGLPGGGFGFGYGYSNGGGPPRGGAGGPGLPQGKNPVKDSIPVARIADALLNPGKEFT 396 (609)
T ss_pred HhHhcccHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCCccccccCcccCCCCCCCcceEeeHhhHHHHHhCCCCeEe
Confidence 99999999999999999999999999988776654433333322111 01000
Q ss_pred -----CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEc---CCCe
Q 004627 569 -----NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYEN---TEGC 632 (741)
Q Consensus 569 -----~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n---~eg~ 632 (741)
...++||++|++++||+. .++|++++|+|++|+|+|+|++|||||||+++|+|++|++.+ .+++
T Consensus 397 ~~~~~~~~~~ik~l~~~~~Np~~~~p~~~~~~~al~~~df~Vv~d~~~teTa~~ADvVLP~~~~~E~~~~~~~~~~~~~~ 476 (609)
T cd02751 397 ANGKLKTYPDIKMIYWAGGNPLHHHQDLNRLIKALRKDETIVVHDIFWTASARYADIVLPATTSLERNDIGLTGNYSNRY 476 (609)
T ss_pred ecCcccCCCCEEEEEECCCChhhcCcchHHHHHHHhcCCEEEEEccCCCCccccCCEEeccCchhhccCccccCCCCCce
Confidence 013579999999999952 467899999999999999999999999999999999998765 3889
Q ss_pred eEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHhC--------CCCCCccccCCCCC
Q 004627 633 TQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRIRTVA--------PNLLHVDEREPATL 694 (741)
Q Consensus 633 vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y---~~~~~v~~~~~~~~--------p~~~~~~~l~~~~~ 694 (741)
++..+|+|+|+||+|+||+|+++||++||.+..| .+.+++++.+.+.. ....+|+++.+..+
T Consensus 477 ~~~~~~~i~P~ge~r~d~~I~~~La~~lg~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~e~l~~~g~ 549 (609)
T cd02751 477 LIAMKQAVEPLGEARSDYEIFAELAKRLGVEEEFTEGRDEMEWLEHLYEETRAKAAGPGPELPSFEEFWEKGI 549 (609)
T ss_pred EEEeccccCCcccccCHHHHHHHHHHHhCCcccccCCCCHHHHHHHHHHHHHhhccccCCCCCCHHHHHhcCC
Confidence 9999999999999999999999999999997543 57788766653221 13358888877654
No 34
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=6.9e-57 Score=515.47 Aligned_cols=357 Identities=16% Similarity=0.154 Sum_probs=294.1
Q ss_pred eeeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC-------CCCeeecC
Q 004627 285 GTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-------DGRFKAVN 356 (741)
Q Consensus 285 ~~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g-------~g~~~~iS 356 (741)
+++|+|++|+.+|++.|+++||+|+||+|+++||+|+|++|+||++.++++| |+||++||+|+| +|+|++||
T Consensus 1 ~~~t~C~~C~~~C~l~v~v~dg~v~kv~g~~~~p~n~G~lC~kG~~~~~~~y~pdRi~~Pl~R~~~rg~~~~~g~~~~is 80 (523)
T cd02757 1 WVPSTCQGCTAWCGLQAYVEDGRVTKVEGNPLHPGSRGRLCAKGHLGLQQVYDPDRILYPMKRTNPRKGRDVDPKFVPIS 80 (523)
T ss_pred CcCccCcCCcCCCCeEEEEECCEEEEEECCCCCCCCCccCCcccccchhhhcCccccccCeeecCCCCCCCCCCCeeEec
Confidence 3689999999999999999999999999999999999999999999999998 999999999974 68999999
Q ss_pred HHHHHHHHHHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCccc---CCCccc
Q 004627 357 WRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIM---NTSISG 429 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~---~~~~~d 429 (741)
|||||++||++|+++. +++++++.|.... +..+++++|++.+|++|+..+.+.|.....++....+ +.+..|
T Consensus 81 WdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~-~~~~~~~r~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~g~~~~~~~D 159 (523)
T cd02757 81 WDEALDTIADKIRALRKENEPHKIMLHRGRYGH-NNSILYGRFTKMIGSPNNISHSSVCAESEKFGRYYTEGGWDYNSYD 159 (523)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCC-ccchHHHHHHHHhCcCCCcCCcchhhhHHHHHHHHHhCCCCCCCcc
Confidence 9999999999999875 4678777665443 4445789999999999887777766443333321111 234579
Q ss_pred cccCCEEEEEcCChhhhhhHH--HHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHHH-------------
Q 004627 430 LEKADCFLLVGTQPRVEAAMV--NARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL------------- 488 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~--~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~l------------- 488 (741)
+++||+||+||+||.++++.. ..++.+++ ++|+|||+|||+.+.|+..++ +|+|.+.+
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~-~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~ii~~~~~ 238 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGK-MDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVILTEGLW 238 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHH-HCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHHHHCCCc
Confidence 999999999999999986433 37787775 589999999999999976654 24443211
Q ss_pred --------------------------------------------------HHHH----cCHHHHHHHHhcCCCcEEE-Ec
Q 004627 489 --------------------------------------------------LEIA----EGRHPFFSAISNAKNPVII-VG 513 (741)
Q Consensus 489 --------------------------------------------------~~i~----~gi~~lA~~l~~a~~~~Ii-~G 513 (741)
++++ +.|+++|+.|+++++.+++ .+
T Consensus 239 d~~Fv~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~e~aa~~tGv~~~~I~~lA~~~a~~~~~~~~~~~ 318 (523)
T cd02757 239 DKDFVGDFVDGKNYFKAGETVDEESFKEKSTEGLVKWWNLELKDYTPEWAAKISGIPAETIERVAREFATAAPAAAAFTW 318 (523)
T ss_pred cHHHHHHhccchhhhhcCCcCChhhccccchhHHHHHHHHHHhccCHHHHHHHHCcCHHHHHHHHHHHHhcCCcEEEecC
Confidence 1111 1278999999998865554 67
Q ss_pred CCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCCCCCCCccCceEEEEeccCccC-------
Q 004627 514 AGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVD------- 586 (741)
Q Consensus 514 ~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g~np~~------- 586 (741)
.|+.++.+|.+..+++..|++++|++|++|++.. . . ..+++|++|+++.||+.
T Consensus 319 ~g~~~~~~G~~~~~ai~~L~~ltG~ig~~GG~~~-~-----------~--------~~~~ik~~~~~~~Np~~~~pd~~~ 378 (523)
T cd02757 319 RGATMQNRGSYNSMACHALNGLVGSIDSKGGLCP-N-----------M--------GVPKIKVYFTYLDNPVFSNPDGMS 378 (523)
T ss_pred ccccccCChHHHHHHHHHHHHHhCCCCCCCCCcC-C-----------C--------CCCCceEEEEccCCccccCCCHHH
Confidence 8999999999999999999999999998874321 0 0 12479999999999963
Q ss_pred -ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCce---EEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCC
Q 004627 587 -LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGT---YENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM 662 (741)
Q Consensus 587 -~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt---~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~ 662 (741)
.++|++++|+|++|+++|+|+.|||||||+++++|++|. +++.+++++..+|+|+|+||+|+||+|+.+||++||.
T Consensus 379 ~~eal~~~~~~V~~d~~~teTa~~ADiVLP~~~~~E~~~~~~~~~~~~~~~~~~~~vi~P~ge~r~d~ei~~~La~~l~~ 458 (523)
T cd02757 379 WEEALAKIPFHVHLSPFMSETTYFADIVLPDGHHFERWDVMSQENNLHPWLSIRQPVVKSLGEVREETEILIELAKKLDP 458 (523)
T ss_pred HHHHHHCCCeEEEEeCCcCchHhhCCEEecCCChhhhcCccccccCCcceeEEecCccCCCcCCCCHHHHHHHHHHHhCC
Confidence 467889999999999999999999999999999999995 4467788999999999999999999999999999998
Q ss_pred C
Q 004627 663 R 663 (741)
Q Consensus 663 ~ 663 (741)
+
T Consensus 459 ~ 459 (523)
T cd02757 459 K 459 (523)
T ss_pred C
Confidence 4
No 35
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=100.00 E-value=9.2e-58 Score=463.02 Aligned_cols=206 Identities=47% Similarity=0.861 Sum_probs=193.6
Q ss_pred cEEEEECCEEEEe-CCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhH
Q 004627 69 AIEVFVDGYPLKI-PKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLA 147 (741)
Q Consensus 69 ~v~~~idg~~~~~-~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~ 147 (741)
.|+|+|||++|+| ++|+||||||+++||+||++|||++|.+.|+||+|+|||+|.+++++||.|+|++||+|.|+++++
T Consensus 68 ~~~I~IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T~Se~v 147 (297)
T PTZ00305 68 RAIMFVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIITDSRLV 147 (297)
T ss_pred ceEEEECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEeCCHHH
Confidence 4899999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhh
Q 004627 148 KKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEV 227 (741)
Q Consensus 148 ~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i 227 (741)
+++|+.+||+||.|||+||++|+++|+|+||++++.||+...||...++..++...+|++.+|++|||+|+||||+|.++
T Consensus 148 ~~~Rk~vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p~i~~D~nKCIlCgRCVRaC~EV 227 (297)
T PTZ00305 148 RDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEH 227 (297)
T ss_pred HHHHHHHHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCCceeecCCcCcCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999776666556667899999999999999999999999
Q ss_pred cCcceeeeecCCCCceeeecccCCcccc--ccccccccccCccccccccc
Q 004627 228 AGVQDLGMLGRGSGEEIGTYVEKLMTSE--LSGNVIDICPVGALTSKPFA 275 (741)
Q Consensus 228 ~g~~~l~~~~r~~~~~i~~~~~~~~~c~--~cg~cv~vCP~gAl~~~~~~ 275 (741)
++..+|++.+||.++.|.+..+.++ |. .||+|+++||||||++++-.
T Consensus 228 qg~~aL~~~~RG~~t~I~t~~d~~~-~~~~~~g~cvdvCPvGAL~~~d~~ 276 (297)
T PTZ00305 228 AQDFNLGMIGRGGLSEISTFLDELE-VKTDNNMPVSQLCPVGKLYLGDAD 276 (297)
T ss_pred hCCcEEEEeecCCCCEEeecCCCcc-cccCCCCceeeECCCcccccCCcc
Confidence 9999999999999999999987643 43 46779999999999999854
No 36
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=100.00 E-value=1.5e-56 Score=494.39 Aligned_cols=341 Identities=30% Similarity=0.408 Sum_probs=298.8
Q ss_pred eecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCC-CCeeecCHHHHHHHH
Q 004627 287 ETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGAD-GRFKAVNWRDALAVV 364 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~-g~~~~iSWdeAl~~i 364 (741)
+|+|++|+.||++.+++++|+|+||+|++++++|+||+|+|||+.++.+| |+||++||+|+++ |+|++||||||++++
T Consensus 1 ~s~C~~C~~gC~i~v~~~~g~i~ri~~~~~~~~n~g~~C~rg~~~~~~~~~~~Rl~~Pl~r~~~~~~~~~isWdeAl~~i 80 (374)
T cd00368 1 PSVCPFCGVGCGILVYVKDGKVVRIEGDPNHPVNEGRLCDKGRAGLDGLYSPDRLKYPLIRVGGRGKFVPISWDEALDEI 80 (374)
T ss_pred CcCCCCCcCCCCEEEEEECCEEEEEECCCCCCCCCceECCCccccccccCCcccccCCeEecCCCCCeEEecHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999998 9999999999842 399999999999999
Q ss_pred HHHHHhcC----CCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhh----cCcccCCCccccccCCEE
Q 004627 365 AEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLR----SGYIMNTSISGLEKADCF 436 (741)
Q Consensus 365 A~~Lk~i~----~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~----~~~~~~~~~~di~~ad~I 436 (741)
+++|++++ +++++++.|+..+.|..+++++|+..+|+.++++....|......+ .....+.++.|+++||+|
T Consensus 81 a~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ad~i 160 (374)
T cd00368 81 AEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLADIENADLI 160 (374)
T ss_pred HHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCCCCCCCCHHHHhhCCEE
Confidence 99999875 5789999998888899999999999999999998887763322111 122345688999999999
Q ss_pred EEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCCHHHH-----HHHH----cCHHHHHHH
Q 004627 437 LLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL-----LEIA----EGRHPFFSA 501 (741)
Q Consensus 437 ll~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~l-----~~i~----~gi~~lA~~ 501 (741)
|+||+||..++|....+++++++ +|+||++|||+.+.|+..++ +|+|...+ ++++ +.|+++|+.
T Consensus 161 l~~G~n~~~~~~~~~~~~~~a~~-~g~kvv~idp~~s~t~~~ad~~i~i~pgtd~al~~a~~~~~i~g~~~~~i~~la~~ 239 (374)
T cd00368 161 LLWGSNPAETHPVLAARLRRAKK-RGAKLIVIDPRRTETAAKADEWLPIRPGTDAALALAEWAAEITGVPAETIRALARE 239 (374)
T ss_pred EEEcCChHHhChHHHHHHHHHHH-CCCeEEEEcCCCCcchHhhCEeeCCCCCcHHHHHhHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999875 89999999999999976654 37776543 3332 237899999
Q ss_pred HhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCCCCCCCccCceEEEEec
Q 004627 502 ISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMG 581 (741)
Q Consensus 502 l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p~~~~~~~~ik~l~l~g 581 (741)
|++++++++++|.+..++.++.+..+++..|+.++|+++++|+++.. +
T Consensus 240 ~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~~~~g~~~~~--------------------------------~ 287 (374)
T cd00368 240 FAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNIGRPGGGLGP--------------------------------G 287 (374)
T ss_pred HHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCCCCCCCcCCC--------------------------------C
Confidence 99999999999999999999999999999999999999887754322 4
Q ss_pred cCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCccHHHHH
Q 004627 582 ADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKII 653 (741)
Q Consensus 582 ~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il 653 (741)
.||+. .++|++++|+|++|+++++|+++||||||+++|+|++|++.|.+|++|..+++++|+|++|+||+|+
T Consensus 288 ~np~~~~~~~~~~~~al~~~~~~V~~d~~~~eta~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~p~~~~~~~~~i~ 367 (374)
T cd00368 288 GNPLVSAPDANRVRAALKKLDFVVVIDIFMTETAAYADVVLPAATYLEKEGTYTNTEGRVQLFRQAVEPPGEARSDWEIL 367 (374)
T ss_pred CChhhcCCCHHHHHHHHhCCCeEEEEecCCCcchhhCcEEecCCcccccCCCccCCCceEEEecCCcCCCCCCccHHHHH
Confidence 44421 3578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 004627 654 RALSEVA 660 (741)
Q Consensus 654 ~~La~~l 660 (741)
.+|+++|
T Consensus 368 ~~La~~l 374 (374)
T cd00368 368 RELAKRL 374 (374)
T ss_pred HHHHhhC
Confidence 9999985
No 37
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=3.3e-56 Score=514.91 Aligned_cols=386 Identities=18% Similarity=0.175 Sum_probs=299.8
Q ss_pred eeCCEEEE--EcCCCCCCCCccccccccccccccCC-CC------CCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcC-
Q 004627 303 SRGPEVMR--ILPRLNEDINEEWISDKTRFCYDGLK-SQ------RLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK- 372 (741)
Q Consensus 303 vrdg~V~r--I~p~~~~~~n~g~iC~KGr~~~~~l~-~~------RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~- 372 (741)
++||++++ |.|++++|+|.|.+|.||.+..+.+| |+ ||++||+|. +|+|++|||||||++||++|++++
T Consensus 72 ~~dG~~~~v~i~~d~~~pvN~G~lC~KG~~~~~~~yspdR~~~~~RL~~PLiR~-~g~~~~iSWDeAld~iA~~lk~i~d 150 (676)
T cd02756 72 TQDGREVYIVIVPDKECPVNSGNYSTRGGTNAERIWSPDNRVGETRLTTPLVRR-GGQLQPTTWDDAIDLVARVIKGILD 150 (676)
T ss_pred ccCCcEEEEEEECCCCCCCCCCccChhhhhHHHHhcCccccccccccCCceEcc-CCceeEccHHHHHHHHHHHHHHHHH
Confidence 45688866 88999999999999999999998886 76 599999998 689999999999999999999975
Q ss_pred ---C-CcEEEEE----CCCCCHHHHHHHHHHH-HHcCCCcccCCCCcc-----hhhhhhhcCcccCCCccccccCCEEEE
Q 004627 373 ---P-EEIVGIA----GRLSDAESMMALKDFL-NRMGSNNVWCEGTGA-----QSNADLRSGYIMNTSISGLEKADCFLL 438 (741)
Q Consensus 373 ---~-~~i~~~~----g~~~~~e~~~~~~~l~-~~lGs~~~~~~~~~~-----~~~~~~~~~~~~~~~~~di~~ad~Ill 438 (741)
+ ++|+++. |+....|..+++.+|+ ..+|++|++.+.+.| .....+|.. .++.+++|+++||+||+
T Consensus 151 ~~Gp~~sv~~~~~d~gg~~~~~e~~y~~~k~~~~~lgt~ni~~~~r~c~~s~~~~~~~~G~g-~~~~~~~Die~Ad~Il~ 229 (676)
T cd02756 151 KDGNDDAVFASRFDHGGGGGGFENNWGVGKFFFMALQTPFVRIHNRPAYNSEVHATREMGVG-ELNNSYEDARLADTIVL 229 (676)
T ss_pred HhCCccEEEEEeccCCCCCccchhhhHHHHHHHHhcCCCcccccCcCCcCcchhhHHhhcCC-CCCCCHHHHHhCCEEEE
Confidence 6 7888763 4444567777777766 589999999877654 222244443 23568999999999999
Q ss_pred EcCChhhhhhHHH--HHH---H-------HHHHhCC-----CEEEEEccCCCCCccccc----------c----CCCHHH
Q 004627 439 VGTQPRVEAAMVN--ARI---R-------KTVRANN-----AKVGYIGPATDLNYDHQH----------L----GTGPKT 487 (741)
Q Consensus 439 ~G~Np~~~~p~~~--~rl---r-------~a~~~~g-----akiivIdp~~~~t~~~~~----------l----G~d~~~ 487 (741)
||+||.+++|++. +.+ + +.+.++| +||||||||.+.|+..++ + |+|.+.
T Consensus 230 ~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad~~~~~~~~lhL~I~PGTD~AL 309 (676)
T cd02756 230 WGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAEAAAGKDRVLHLQVNPGTDTAL 309 (676)
T ss_pred ECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhhhhcccCcceEEeecCChHHHH
Confidence 9999999999754 221 1 1111245 699999999999987653 2 787654
Q ss_pred HHHH------------------H----cCHHHHHHHHhcCC------CcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCC
Q 004627 488 LLEI------------------A----EGRHPFFSAISNAK------NPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI 539 (741)
Q Consensus 488 l~~i------------------~----~gi~~lA~~l~~a~------~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~ 539 (741)
+..+ + +.|+++|+.|++++ +++++++.|+.++.++....+++.+|+.+||++
T Consensus 310 ~~al~~~Iie~~~~~~e~aa~itGV~~e~I~~~A~~~a~ak~~~~~~~~~i~~~~Gi~~~~~~~~~~~Ai~nL~llTGni 389 (676)
T cd02756 310 ANAIARYIYESLDEVLAEAEQITGVPRAQIEKAADWIAKPKEGGYRKRVMFEYEKGIIWGNDNYRPIYSLVNLAIITGNI 389 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhCcccccCCcEEEEecccceecccHHHHHHHHHHHHHHhCCC
Confidence 3222 1 23899999999875 668889999999999999999999999999999
Q ss_pred CCCCcceeecCchhhhhhhhhcCC-----CCCC------C--CCccCceEEEEeccCccC--------ccCCCC------
Q 004627 540 RPDWNGLNVLLLNAAQAAALDLGL-----VPES------S--NSIESAKFVYLMGADDVD--------LEKLPN------ 592 (741)
Q Consensus 540 ~~~g~g~~~l~~~~~~~g~~~~g~-----~p~~------~--~~~~~ik~l~l~g~np~~--------~~al~k------ 592 (741)
|++|+|++...+. ..|...... .|.. + ...+++|++|++|.||+. +++|++
T Consensus 390 GrpG~G~~~~gg~--~~g~~~p~~~~~~~~~~~~~~~~~~~~l~~G~iK~l~v~g~NP~~s~pn~~~v~~al~~~~~~v~ 467 (676)
T cd02756 390 GRPGTGCVRQGGH--QEGYVRPPPPPPPWYPQYQYAPYIDQLLISGKGKVLWVIGCDPYKTTPNAQRLRETINHRSKLVT 467 (676)
T ss_pred CCCCCcccccCcc--ccCCCCCCCCCCcccCccchHHHHHHHHhCCCceEEEEecCChhhhCcCHHHHHHHHHhhhhhhh
Confidence 9999987654221 111111000 0000 0 046789999999999952 233321
Q ss_pred ----------------------------CCeEEEEcccCCccccccceeccCCCCCCCCceEEcC-CCeeEeeccccCCC
Q 004627 593 ----------------------------DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENT-EGCTQQTLPAVPTV 643 (741)
Q Consensus 593 ----------------------------~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~-eg~vq~~~~av~P~ 643 (741)
.+|+|++|+|+++|+++||||||+++|+|++|+++|. ++++|..+|+|+|+
T Consensus 468 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~fvVv~D~~~teTa~~ADvVLPaa~~~E~~gt~~n~~errv~~~~k~v~Pp 547 (676)
T cd02756 468 DAVEAALYAGTYDREAMVCLIGDAIQPGGLFIVVQDIYPTKLAEDAHVILPAAANGEMNETSMNGHERRLRLYEKFMDPP 547 (676)
T ss_pred hhhhhccccccccchhhhhhhhhhccCCCCEEEEEecCCCchhhhCcEEeCCCCccccCCeecccCCceEEEeccccCCC
Confidence 2699999999999999999999999999999999999 99999999999999
Q ss_pred CCCccHHHHHHHHHHHhC----------C------CCCCCCHHHHHHHH-HHhCCC--------------C--CCccccC
Q 004627 644 GDARDDWKIIRALSEVAG----------M------RLPYDTIGGIRSRI-RTVAPN--------------L--LHVDERE 690 (741)
Q Consensus 644 gear~d~~Il~~La~~lg----------~------~~~y~~~~~v~~~~-~~~~p~--------------~--~~~~~l~ 690 (741)
||+|+||+|+++||++|| . .++|++.++++++. ....+. + ++|+.|+
T Consensus 548 gear~D~~I~~~lA~rl~~~~~~~g~~~~~~~~~~~f~~~~~e~~f~e~~~~~~~~~~~~~~~~~~~~~~~~g~ty~~l~ 627 (676)
T cd02756 548 GEAMPDWWIAAMIANRIYELYQEEGKGGSAQYQFFGFIWKTEEDNFMDGSQEFADGGEFSEDYYVLGQERYEGVTYNRLK 627 (676)
T ss_pred ccCccHHHHHHHHHHHHHHHHhhcCCccchhhhhccCCCCCHHHHHHHHHHHhcCCCCccccccccccccccCCCHHHHH
Confidence 999999999999999997 2 27899999999996 444322 2 6888887
Q ss_pred CC
Q 004627 691 PA 692 (741)
Q Consensus 691 ~~ 692 (741)
..
T Consensus 628 ~~ 629 (676)
T cd02756 628 AV 629 (676)
T ss_pred hc
Confidence 53
No 38
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.2e-55 Score=518.95 Aligned_cols=391 Identities=15% Similarity=0.125 Sum_probs=304.2
Q ss_pred eecCCCCCCCCCceEeeeC--CEEEEEcCCCCCCCC---------------------------ccccccccccccccCC-
Q 004627 287 ETIDVTDAVGSNIRIDSRG--PEVMRILPRLNEDIN---------------------------EEWISDKTRFCYDGLK- 336 (741)
Q Consensus 287 ~siC~~C~~gC~i~v~vrd--g~V~rI~p~~~~~~n---------------------------~g~iC~KGr~~~~~l~- 336 (741)
+|+|.+|+++|+|+|+++| |+|+||+||+.||.| .|++|.||++.++.+|
T Consensus 1 ~s~C~~C~~~Cgi~v~v~~~~g~v~~i~Gnp~hP~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~lC~KG~a~~~~~y~ 80 (735)
T cd02758 1 YSSCLGCWTQCGIRVRVDKETGKVLRIAGNPYHPLNTAPSLPYNTPLKESLYLSLVGENGLKARATACARGNAGLQYLYD 80 (735)
T ss_pred CCcCcCCcCCCCeEEEEeCCCCeEEEeeCCCCCccccCCCcccccchhhhhhhccccccccccCCCcCccchhhHhhhcC
Confidence 4899999999999999999 999999999999999 9999999999999998
Q ss_pred CCCCCCcEEeC---CCCCeeecCHHHHHHHHHHH-----------HHhcC--------------CCc--EEEEECCCCCH
Q 004627 337 SQRLNDPMIRG---ADGRFKAVNWRDALAVVAEV-----------MLQAK--------------PEE--IVGIAGRLSDA 386 (741)
Q Consensus 337 ~~RL~~PliR~---g~g~~~~iSWdeAl~~iA~~-----------Lk~i~--------------~~~--i~~~~g~~~~~ 386 (741)
|+||++||||+ |+|+|++|||||||++||++ |++++ +++ ++++.|....
T Consensus 81 p~Rl~~PLkR~G~RGegkw~~ISWdeAl~~IA~~~~~~~~~~~~gl~~i~~~~~~idp~~p~~Gp~s~~~~~~~~~~~~- 159 (735)
T cd02758 81 PYRVLQPLKRVGPRGSGKWKPISWEQLIEEVVEGGDLFGEGHVEGLKAIRDLDTPIDPDHPDLGPKANQLLYTFGRDEG- 159 (735)
T ss_pred cccccCCeeecCCCCCCceEEecHHHHHHHHHhccccccccchhhHHHHHhhhcccccCccccCceeeEEEEEecCCCc-
Confidence 99999999997 47899999999999999999 45542 234 3333332221
Q ss_pred HHHHHHHHHH-HHcCCCcccCCCCcchhhhhhhcCc------ccCCCccccccCCEEEEEcCChhhhhhHH---HHHHHH
Q 004627 387 ESMMALKDFL-NRMGSNNVWCEGTGAQSNADLRSGY------IMNTSISGLEKADCFLLVGTQPRVEAAMV---NARIRK 456 (741)
Q Consensus 387 e~~~~~~~l~-~~lGs~~~~~~~~~~~~~~~~~~~~------~~~~~~~di~~ad~Ill~G~Np~~~~p~~---~~rlr~ 456 (741)
. .+++++|+ +.+|++|++.+.+.|......+... .......|+++||+||+||+|+.+++|.+ ..++.+
T Consensus 160 ~-~~~~~rf~~~~~Gs~N~~~~~~~C~~s~~~g~~~~~g~~~~~~~~~~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~ 238 (735)
T cd02758 160 R-TPFIKRFANQAFGTVNFGGHGSYCGLSYRAGNGALMNDLDGYPHVKPDFDNAEFALFIGTSPAQAGNPFKRQARRLAE 238 (735)
T ss_pred c-hHHHHHHHHHcCCCCceeCCCCccccHHHHHHHHHhcCCCCCCcCCcCHhhCcEEEEeCCCHHHhCCCcchHHHHHHH
Confidence 2 26789999 6899999999888874433222211 12346799999999999999999999987 788888
Q ss_pred HHHhCCCEEEEEccCCCCCc---cccc------cCCCHHH----------------------------------------
Q 004627 457 TVRANNAKVGYIGPATDLNY---DHQH------LGTGPKT---------------------------------------- 487 (741)
Q Consensus 457 a~~~~gakiivIdp~~~~t~---~~~~------lG~d~~~---------------------------------------- 487 (741)
+++++|+||||||||++.|+ ..++ +|+|...
T Consensus 239 a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIrPGTD~AL~lam~~~Iie~~~yD~~Fl~~~~~~a~~~~g~~~~tna~~ 318 (735)
T cd02758 239 ARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIKPGGDGALAMAMIRWIIENERYNAEYLSIPSKEAAKAAGEPSWTNATH 318 (735)
T ss_pred HHHhCCCEEEEECCCCCccccccccCCEEECCCCCcHHHHHHHHHHHHHHCCCccHHHHhccchhhhccccccccccccc
Confidence 87668999999999999988 6554 2554321
Q ss_pred -------------------------HHHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCC
Q 004627 488 -------------------------LLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 538 (741)
Q Consensus 488 -------------------------l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~ 538 (741)
+++++ +.|+++|++|+++++.+++++.|..+|.+|.+..+++.+|+.++|+
T Consensus 319 lv~~v~v~~gfe~l~e~~~~~Tpe~~a~icGVp~~~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~~~Ai~~L~~LtGn 398 (735)
T cd02758 319 LVITVRVKSALQLLKEEAFSYSLEEYAEICGVPEAKIIELAKEFTSHGRAAAVVHHGGTMHSNGFYNAYAIRMLNALIGN 398 (735)
T ss_pred cccccccccHHHHHHHHhhcCCHHHHHHHHCcCHHHHHHHHHHHHhcCCceEEEccCcccccccHHHHHHHHHHHHHhCC
Confidence 11111 2289999999999988898999999999999999999999999999
Q ss_pred CCCCCcceeecC------chhh--------hhhh-----------h----------hcCC---------CCCCC------
Q 004627 539 IRPDWNGLNVLL------LNAA--------QAAA-----------L----------DLGL---------VPESS------ 568 (741)
Q Consensus 539 ~~~~g~g~~~l~------~~~~--------~~g~-----------~----------~~g~---------~p~~~------ 568 (741)
++++|+++..-. ...+ ..+. + ..+. .|...
T Consensus 399 ig~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~e~ 478 (735)
T cd02758 399 LNWKGGLLMSGGGFADNSAGPRYDFKKFFGEVKPWGVPIDRSKKAYEKTSEYKRKVAAGENPYPAKRPWYPLTPELYTEV 478 (735)
T ss_pred CCCCCCCccCCCCCCCcCcccccccccccCccCCCCCcccccccccccchHhhhhhhccCCCCccccccccccchhhhHH
Confidence 999985432100 0000 0000 0 0000 01000
Q ss_pred ------CCccCceEEEEeccCccC---------ccCC---CCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCC
Q 004627 569 ------NSIESAKFVYLMGADDVD---------LEKL---PNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTE 630 (741)
Q Consensus 569 ------~~~~~ik~l~l~g~np~~---------~~al---~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~e 630 (741)
....+||++|++++||+. .++| ++++|+|++|+++|||+.|||||||+++|+|++|+..++.
T Consensus 479 ~~a~~~g~Py~IKal~i~~~NP~~s~p~~~~~~~eaL~d~~kldlvVv~D~~~teTa~~AD~VLPa~t~~E~~~~~~~~~ 558 (735)
T cd02758 479 IASAAEGYPYKLKALILWMANPVYGAPGLVKQVEEKLKDPKKLPLFIAIDAFINETSAYADYIVPDTTYYESWGFSTPWG 558 (735)
T ss_pred hhhhhhcCCCCcEEEEEeCCChhhcCCcchHHHHHHhcccccCCeEEEEecCcCchHhhCCEEeCCCCcccccccccccC
Confidence 012389999999999942 3567 5899999999999999999999999999999999988753
Q ss_pred ----CeeEeeccccCCCCC------CccHHHHHHHHHHHhCCC--------------CCCCCHHHHHHHHHHh
Q 004627 631 ----GCTQQTLPAVPTVGD------ARDDWKIIRALSEVAGMR--------------LPYDTIGGIRSRIRTV 679 (741)
Q Consensus 631 ----g~vq~~~~av~P~ge------ar~d~~Il~~La~~lg~~--------------~~y~~~~~v~~~~~~~ 679 (741)
..++.++|+|+|+|+ +|++|+|+.+||++||++ ++|++.+|++.+..+.
T Consensus 559 ~~~~~~~~~r~pvv~P~ge~~~~g~~~~~~~i~~~lAkrlGl~gfg~~~~~~~~~~~~~~~~~~d~~~~~~an 631 (735)
T cd02758 559 GVPTKASTARWPVIAPLTEKTANGHPVSMESFLIDLAKALGLPGFGPNAIKDGQGNKFPLNRAEDYYLRVAAN 631 (735)
T ss_pred CCcccceeeEccccCcCcccccCCCccCHHHHHHHHHHHhCCCCcccccccCCCCCccCCCCHHHHHHHHHHH
Confidence 347778999999984 677999999999999762 5788999999886443
No 39
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=100.00 E-value=1.7e-55 Score=530.21 Aligned_cols=410 Identities=15% Similarity=0.130 Sum_probs=310.7
Q ss_pred eeeeeecCCC-CCCCCCceEeeeCCEEEEEcCCCCC-----CCCccccccccccccccCC-CCCCCCcEEeCC---CCCe
Q 004627 283 LKGTETIDVT-DAVGSNIRIDSRGPEVMRILPRLNE-----DINEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRF 352 (741)
Q Consensus 283 l~~~~siC~~-C~~gC~i~v~vrdg~V~rI~p~~~~-----~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~ 352 (741)
.+.+.|+|++ |+.+|++.|+|+||+|+||+|++++ ++|+|++|.||++.++.+| |+||++||+|+| +|+|
T Consensus 56 ~~~~~t~C~~~C~~~C~l~v~v~dG~v~~v~~~~~~~~~~~~~~~g~~C~kG~~~~~~~y~pdRl~~Pl~R~g~rG~g~~ 135 (814)
T PRK14990 56 EKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKF 135 (814)
T ss_pred ceEEeccCCCCcCCCCceEEEEECCEEEEEecCCCCCcccccccCcCcChhhHhHHHhhcChhhhCCCeEecccCCCCCe
Confidence 5778999985 9999999999999999999999864 5779999999999999998 999999999974 6899
Q ss_pred eecCHHHHHHHHHHHHHhcC----CCcEEEEEC-CCC-------CHHHHHHHHHHHHHcCCC-cccCCCCcc----hhhh
Q 004627 353 KAVNWRDALAVVAEVMLQAK----PEEIVGIAG-RLS-------DAESMMALKDFLNRMGSN-NVWCEGTGA----QSNA 415 (741)
Q Consensus 353 ~~iSWdeAl~~iA~~Lk~i~----~~~i~~~~g-~~~-------~~e~~~~~~~l~~~lGs~-~~~~~~~~~----~~~~ 415 (741)
++|||||||++||++|++++ +++|+++.| +.. ..+..+++++|++.+|.. +.....+.+ +...
T Consensus 136 ~~iSWdEAl~~Ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 215 (814)
T PRK14990 136 ERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNY 215 (814)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhhCccceEEeecccccCcccccccccchHHHHHHHHhccCcccCCCCccHHHHhhhhhc
Confidence 99999999999999999864 578876544 211 124567789999988753 222211111 1122
Q ss_pred hhhcCcccCCCccccccCCEEEEEcCChhhhhhH---HHHHHHHHHHhCCCEEEEEccCCCCCcc-ccc------cCCC-
Q 004627 416 DLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAM---VNARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTG- 484 (741)
Q Consensus 416 ~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~---~~~rlr~a~~~~gakiivIdp~~~~t~~-~~~------lG~d- 484 (741)
.+|.. ..+.++.|+++||+||+||+||.+++|. +..+++++++++|+|||+|||+++.|+. .++ +|+|
T Consensus 216 ~~G~~-~~~~~~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~irPGTD~ 294 (814)
T PRK14990 216 TYGGW-ADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDA 294 (814)
T ss_pred eeccC-CCCCCHHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECCCCCcHH
Confidence 33321 2345789999999999999999999874 5578888765689999999999999963 433 1333
Q ss_pred ----------------------------------------------------------HHHHHHHH----cCHHHHHHHH
Q 004627 485 ----------------------------------------------------------PKTLLEIA----EGRHPFFSAI 502 (741)
Q Consensus 485 ----------------------------------------------------------~~~l~~i~----~gi~~lA~~l 502 (741)
|+++++++ +.|+++|++|
T Consensus 295 al~lam~~~ii~e~l~D~~fv~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~dg~~~tpe~aa~itGV~a~~I~~lA~~~ 374 (814)
T PRK14990 295 ALVNGLAYVMITENLVDQPFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREI 374 (814)
T ss_pred HHHHHHHHHHHHcCcccHHHHHhhccccCcccccccccccccHHHHhcccccCCCcCCHHHHHhhHCcCHHHHHHHHHHH
Confidence 33344443 2389999999
Q ss_pred hcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhh-----------h-hhh---------hhc
Q 004627 503 SNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAA-----------Q-AAA---------LDL 561 (741)
Q Consensus 503 ~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~-----------~-~g~---------~~~ 561 (741)
+++++++|++|+|+.++.||.+..+++..|++++|++|++|+|.+...+... . .+. ...
T Consensus 375 a~~~~~~i~~g~g~~~~~~g~~~~rai~~L~aLtGnig~~Gg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (814)
T PRK14990 375 GSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTDAIER 454 (814)
T ss_pred HhcCCcEEEcchhHHHhhhhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCcccCCCCCCCccceecHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999876543221100 0 000 000
Q ss_pred CC-----CCCCCC---CccCceEEEEeccCcc-C--------ccCC---CCCCeEEEEcccCCccccccceeccCCCCCC
Q 004627 562 GL-----VPESSN---SIESAKFVYLMGADDV-D--------LEKL---PNDAFVVYQGHHGDHGVYRANVILPASAFSE 621 (741)
Q Consensus 562 g~-----~p~~~~---~~~~ik~l~l~g~np~-~--------~~al---~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 621 (741)
|. ...... ...+||++|++++||+ . .++| ++++|+|++|+|+|+|++|||||||+++|+|
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~ldf~Vv~D~~~t~Ta~~ADiVLPa~t~~E 534 (814)
T PRK14990 455 GPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCTASE 534 (814)
T ss_pred CCccccccccccCCccCCCCcEEEEEcCCCCeeecchHHHHHHHHhcccCCCCEEEEecCccCchhhhhheeccCCChHh
Confidence 00 000000 1357999999999984 2 3566 5799999999999999999999999999999
Q ss_pred CCceEE-c---CCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHHHHh----CCCCCCccccC
Q 004627 622 KEGTYE-N---TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRIRTV----APNLLHVDERE 690 (741)
Q Consensus 622 k~gt~~-n---~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y---~~~~~v~~~~~~~----~p~~~~~~~l~ 690 (741)
+++... + ...+++..+|+|+|+||+|+||+|+.+||++||.+..| .+.+++++.+.+. .+.+.+|+++.
T Consensus 535 ~~d~~~~~~~~~~~~v~~~~~~i~P~gesk~d~~I~~~LA~rlG~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~t~e~l~ 614 (814)
T PRK14990 535 QMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFR 614 (814)
T ss_pred cCccccccccCCCceEEeeccccCCccccCCHHHHHHHHHHHhCCccccCCCCCHHHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 998542 1 23479999999999999999999999999999987544 3677777776432 23445778776
Q ss_pred CCC
Q 004627 691 PAT 693 (741)
Q Consensus 691 ~~~ 693 (741)
+..
T Consensus 615 ~~g 617 (814)
T PRK14990 615 KQG 617 (814)
T ss_pred hCC
Confidence 554
No 40
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=100.00 E-value=1.9e-55 Score=529.72 Aligned_cols=410 Identities=16% Similarity=0.162 Sum_probs=310.0
Q ss_pred eeeeeecCCC-CCCCCCceEeeeCCEEEEEcCCCCC----CCCccccccccccccccCC-CCCCCCcEEeCC---CCCee
Q 004627 283 LKGTETIDVT-DAVGSNIRIDSRGPEVMRILPRLNE----DINEEWISDKTRFCYDGLK-SQRLNDPMIRGA---DGRFK 353 (741)
Q Consensus 283 l~~~~siC~~-C~~gC~i~v~vrdg~V~rI~p~~~~----~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~g~~~ 353 (741)
.+.++|+|++ |+.+|++.|+|+||+|+||+|++++ +.|.|++|.||++.++.+| |+||++||+|+| +|+|+
T Consensus 42 ~~~~~t~C~~~C~~~C~l~v~v~dg~v~~v~g~~~~~~~~~~~~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~g~~~ 121 (797)
T TIGR02166 42 EKVVWSACTVNCGSRCPLRVHVKDGEITRIETDNTGDDEYGNHQVRACLRGRSMRRRVYNPDRLKYPMKRVGKRGEGKFE 121 (797)
T ss_pred ceEEecccCCCCCCCCceEEEEECCEEEEEeCCCCCCcccccccCCcChhhhhHHHhhcChhhhccCeeeccCCCCCCeE
Confidence 5678999985 9999999999999999999998754 4567899999999999998 999999999974 68999
Q ss_pred ecCHHHHHHHHHHHHHhcC----CCcEEEEECC-CC--C---HHHHHHHHHHHHHcCCC-cccCCCCc----chhhhhhh
Q 004627 354 AVNWRDALAVVAEVMLQAK----PEEIVGIAGR-LS--D---AESMMALKDFLNRMGSN-NVWCEGTG----AQSNADLR 418 (741)
Q Consensus 354 ~iSWdeAl~~iA~~Lk~i~----~~~i~~~~g~-~~--~---~e~~~~~~~l~~~lGs~-~~~~~~~~----~~~~~~~~ 418 (741)
+|||||||++||++|++++ +++++++.|. .. . .+..+++.+|++.+|+. +.....+. ++....+|
T Consensus 122 ~iSWdeAl~~ia~kl~~i~~~~G~~sv~~~~g~g~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~G 201 (797)
T TIGR02166 122 RISWDEATDTIADNLKRIIEKYGNEAIYVNYGTGTTGGTMSRSWPPTAVARLLNLCGGYLNQYGSYSTAQINEAMPYTYG 201 (797)
T ss_pred EecHHHHHHHHHHHHHHHHHHhCccceEeecccccccccccccchhHHHHHHHHHhCCccccCCCeecchhhcccceeEe
Confidence 9999999999999999975 4778765442 21 1 12235688999998853 22222111 12222333
Q ss_pred cCcccCCCccccccCCEEEEEcCChhhhhh---HHHHHHHHHHHhCCCEEEEEccCCCCCcc-ccc------cCCCH---
Q 004627 419 SGYIMNTSISGLEKADCFLLVGTQPRVEAA---MVNARIRKTVRANNAKVGYIGPATDLNYD-HQH------LGTGP--- 485 (741)
Q Consensus 419 ~~~~~~~~~~di~~ad~Ill~G~Np~~~~p---~~~~rlr~a~~~~gakiivIdp~~~~t~~-~~~------lG~d~--- 485 (741)
.. ..+.++.|+++||+||+||+||.+++| ....+++++++++|+|||+|||+++.|+. .++ +|+|.
T Consensus 202 ~~-~~~~~~~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~irPGtD~al~ 280 (797)
T TIGR02166 202 IS-ADGSSLDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIRPGTDAALV 280 (797)
T ss_pred ec-CCCCCHHHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCCCCCHHHHH
Confidence 21 224578999999999999999999998 56667777766689999999999999863 443 24443
Q ss_pred --------------------------------------------------------HHHHHHH----cCHHHHHHHHhcC
Q 004627 486 --------------------------------------------------------KTLLEIA----EGRHPFFSAISNA 505 (741)
Q Consensus 486 --------------------------------------------------------~~l~~i~----~gi~~lA~~l~~a 505 (741)
+++++++ +.|+++|++|+++
T Consensus 281 ~a~~~~ii~e~l~D~~Fi~~~t~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpe~aa~itGV~~~~I~~lA~~~a~~ 360 (797)
T TIGR02166 281 AAIAYVMISENLHDQAFLDRYCVGFDEKTLPASAPKNGSYKDYILGEGADGTPKTPEWASKITGIPADTIIKLAREIGNA 360 (797)
T ss_pred HHHHHHHHHCCcccHHHHHHhccccCCccCccccccccchHhhhcCcccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 2233333 2389999999999
Q ss_pred CCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhh--hh-------------------hhhcCC-
Q 004627 506 KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQ--AA-------------------ALDLGL- 563 (741)
Q Consensus 506 ~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~--~g-------------------~~~~g~- 563 (741)
++++|++|+|+.++.||.+..+++..|++++|+++++|+|++.+.+..+. .+ ....|.
T Consensus 361 ~~~~i~~g~G~~~~~~g~~~~~ai~~L~aLtGnig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (797)
T TIGR02166 361 KPAFISQGWGPQRHANGEQAARAIMMLALLTGNVGIKGGNNGAREGNYSLPFARMPELPNPVKTSISCFLWTDAIDRGTE 440 (797)
T ss_pred CCcEEEechhhhhhhcchHHHHHHHHHHHHhCCCCCCCcCCccCCCCCCCCCCCCCCCCCCccccccHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999876443221100 00 000010
Q ss_pred ----CCCCC---CCccCceEEEEeccCcc-C--------ccCCC---CCCeEEEEcccCCccccccceeccCCCCCCCCc
Q 004627 564 ----VPESS---NSIESAKFVYLMGADDV-D--------LEKLP---NDAFVVYQGHHGDHGVYRANVILPASAFSEKEG 624 (741)
Q Consensus 564 ----~p~~~---~~~~~ik~l~l~g~np~-~--------~~al~---k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~g 624 (741)
.+... ...+++|++|++++||+ . .++|+ +++|+|++|+|+|+|++|||||||+++|+|+++
T Consensus 441 ~~~~~~~~~~~~~~~~~ik~l~~~~~Np~~~~~p~~~~~~~al~~~~~ldf~Vv~D~~~teTa~~ADiVLPa~t~lE~~~ 520 (797)
T TIGR02166 441 MTAIKDGVRGKDKLDSNIKFLWNYAGNCLINQHSDINRTHKILQDESKCEMIVVIDNHMTSSAKYADILLPDTTTLEQND 520 (797)
T ss_pred cccccCCccCCccCCCCeEEEEEcCCCceeccchhHHHHHHHhhcccCCCEEEEeecccCcchhhccEEecCCCccccCc
Confidence 00000 01468999999999995 2 24554 789999999999999999999999999999999
Q ss_pred eEEcCC----CeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC---CCHHHHHHHH----HHhCCCCCCccccCCCC
Q 004627 625 TYENTE----GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY---DTIGGIRSRI----RTVAPNLLHVDEREPAT 693 (741)
Q Consensus 625 t~~n~e----g~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y---~~~~~v~~~~----~~~~p~~~~~~~l~~~~ 693 (741)
++.+.. ++++..+|+|+|+||+|+||+|+.+||++||++..| .+.+++.+++ ....+.+.+|++|.+.+
T Consensus 521 ~~~~~~~~~~~~~~~~~~~v~P~~e~r~d~~I~~~LA~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~g 600 (797)
T TIGR02166 521 FIEDSYASNMSYLIFMQKAIEPLFECKPIYDMLSEVAKRLGVEAEFTEGRTQEEWLEHLYAQTRAADPALPSFAELRKQG 600 (797)
T ss_pred cccccccCCCceEEEeccCcCCcccccCHHHHHHHHHHHhCChhhccCCCCHHHHHHHHHHHHHhhCCCCCCHHHHHhcC
Confidence 886554 689999999999999999999999999999987433 3555555443 33444445778776554
No 41
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=1.6e-54 Score=510.53 Aligned_cols=378 Identities=14% Similarity=0.089 Sum_probs=288.2
Q ss_pred eecCCCCCCCCCce-EeeeCCEEEEEcCCCC---CCCCccccccccccccccCC-CCCCCCcEEeCC-------CCCeee
Q 004627 287 ETIDVTDAVGSNIR-IDSRGPEVMRILPRLN---EDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-------DGRFKA 354 (741)
Q Consensus 287 ~siC~~C~~gC~i~-v~vrdg~V~rI~p~~~---~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g-------~g~~~~ 354 (741)
+|+|.+|+.||++. ++++||+|+||+|+++ ++.|+|++|+||++.++.+| |+||++||+|+| +|+|++
T Consensus 1 pT~C~~C~~gCgi~~v~v~dG~vvrV~gn~~~~~~~~n~G~lC~KG~~~~~~ly~pdRL~~PLkR~g~k~G~~~dg~~~~ 80 (760)
T cd02760 1 PTYCYNCVAGPDFMAVKVVDGVATEIEPNFAAEDIHPARGRVCVKAYGLVQKTYNPNRVLQPMKRTNPKKGRNEDPGFVP 80 (760)
T ss_pred CccCCCccccCCeeEEEEECCEEEEEECCCccccCCCCCCccChhhhhhHhhhcCchhhcCCeeccCCCCCCcCCCCeeE
Confidence 48999999999996 6899999999999988 78899999999999999998 999999999973 379999
Q ss_pred cCHHHHHHHHHHHHHhcCCC---------cE-EEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcC
Q 004627 355 VNWRDALAVVAEVMLQAKPE---------EI-VGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSG 420 (741)
Q Consensus 355 iSWdeAl~~iA~~Lk~i~~~---------~i-~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~ 420 (741)
|||||||++||++|++++.+ ++ +.+.++....+...++++|++.+|++|+++.... | +....+|..
T Consensus 81 ISWDEAld~IA~kL~~i~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~Gs~n~~~~~~~~~~~~~~~~~~G~~ 160 (760)
T cd02760 81 ISWDEALDLVAAKLRRVREKGLLDEKGLPRLAATFGHGGTPAMYMGTFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEF 160 (760)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEecCCCchHHHHHHHHHHHHHhCCCcccccCCccccccchhhhhccc
Confidence 99999999999999987532 22 3344455545556778899999999998654421 1 111223321
Q ss_pred cccC-CCccccccCCEEEEEcCChhhhh-hHHHHHHHHHHHhCCCEEEEEccCCCCCccccc------cCCC--------
Q 004627 421 YIMN-TSISGLEKADCFLLVGTQPRVEA-AMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTG-------- 484 (741)
Q Consensus 421 ~~~~-~~~~di~~ad~Ill~G~Np~~~~-p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~------lG~d-------- 484 (741)
...+ ..+.|+++||+||+||+|+..++ |+...++.+++ ++|+|||+||||.+.|+..++ +|+|
T Consensus 161 ~~~~~~~~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar-~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~ 239 (760)
T cd02760 161 WHRAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADAR-VRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMI 239 (760)
T ss_pred ccCCCCccchHhcCCEEEEECCCchHhcCcHHHHHHHHHH-HcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHH
Confidence 1111 24689999999999999998775 55566676664 589999999999998865433 1222
Q ss_pred --------------------------------------------------------------------------------
Q 004627 485 -------------------------------------------------------------------------------- 484 (741)
Q Consensus 485 -------------------------------------------------------------------------------- 484 (741)
T Consensus 240 ~~Ii~e~~~~lyD~~Fl~~~Tn~p~Lv~~d~~~lr~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 319 (760)
T cd02760 240 HVMVHEQGLGKLDVPFLRDRTSSPYLVGPDGLYLRDAATGKPLVWDERSGRAVPFDTRGAVPAVAGDFAVDGAVSVDADD 319 (760)
T ss_pred HHHHhccccccchHHHHHHhCCCceEEecCCceeeccccCCeEEEECCCCccccccccccccccccccccccceeecccc
Confidence
Q ss_pred -------------------------HHHHHHHH----cCHHHHHHHHhcC----------------CCcEEEEcCCcccC
Q 004627 485 -------------------------PKTLLEIA----EGRHPFFSAISNA----------------KNPVIIVGAGLFER 519 (741)
Q Consensus 485 -------------------------~~~l~~i~----~gi~~lA~~l~~a----------------~~~~Ii~G~g~~~~ 519 (741)
|+++++++ +.|+++|++|+++ ++++|++|.|+.++
T Consensus 320 ~~~~~~~~~~~t~F~~l~e~~~~yTpE~aaeItGVpa~~Ir~lAr~~a~~a~~g~~~~~~g~~~~~~p~~i~~g~G~~~~ 399 (760)
T cd02760 320 ETAIHQGVEGTTAFTMLVEHMRKYTPEWAESICDVPAATIRRIAREFLENASIGSTIEVDGVTLPYRPVAVTLGKSVNNG 399 (760)
T ss_pred cccccCCcccccHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhccccCcccccccccccCCceEEEeCcccccc
Confidence 12223332 2389999999987 45678899999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhh-------hhhhhcC------------------------------
Q 004627 520 KDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQ-------AAALDLG------------------------------ 562 (741)
Q Consensus 520 ~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~-------~g~~~~g------------------------------ 562 (741)
.+|.+..+++..|++++|+++++|++++......+. .+....|
T Consensus 400 ~ng~~~~rAi~~L~aLtGnig~pGG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 479 (760)
T cd02760 400 WGAFECCWARTLLATLVGALEVPGGTLGTTVRLNRPHDDRLASVKPGEDGFMAQGFNPTDKEHWVVKPTGRNAHRTLVPI 479 (760)
T ss_pred cccHHHHHHHHHHHHHhCCCCCCCccccCCCCcCcccccccccccCccccccccccccccccccCCCccccccccccccc
Confidence 999999999999999999999999876432110000 0000000
Q ss_pred ----CCCC-----------------CC--CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccc
Q 004627 563 ----LVPE-----------------SS--NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRAN 611 (741)
Q Consensus 563 ----~~p~-----------------~~--~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~AD 611 (741)
..+. .. ....+||++|++++||+. .++|++++|+|++|+|+|+|++|||
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ik~~~~~~~Np~~s~pd~~~~~eal~kldf~V~~D~~~teTa~~AD 559 (760)
T cd02760 480 VGNSAWSQALGPTQLAWMFLREVPLDWKFELPTLPDVWFNYRTNPAISFWDTATLVDNIAKFPFTVSFAYTEDETNWMAD 559 (760)
T ss_pred cccchhhhcccccccccccccchhhhhccCCCCCceEEEEeCCCHHHhCCCHHHHHHHHhcCCeEEEEeCCcCchHhhhh
Confidence 0000 00 012469999999999953 4688999999999999999999999
Q ss_pred eeccCCCCCCCCceEEc----------CCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCC
Q 004627 612 VILPASAFSEKEGTYEN----------TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLP 665 (741)
Q Consensus 612 vVLP~a~~~Ek~gt~~n----------~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~ 665 (741)
||||+++|+|+++...+ .+++++..+|+|+|+||+|+||+|+.+||++||+...
T Consensus 560 iVLP~at~lEr~d~~~~~~~~~~~~~~~~~~~~~~~pvVeP~gEar~d~eI~~eLA~rlG~~~~ 623 (760)
T cd02760 560 VLLPEATDLESLQMIKVGGTKFVEQFWEHRGVVLRQPAVEPQGEARDFTWISTELAKRTGLLAD 623 (760)
T ss_pred eeecCCCcccccCccccCCccccccccccceeeeeccCCCCCCCCcCHHHHHHHHHHHhCChhH
Confidence 99999999999885422 3557999999999999999999999999999998643
No 42
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=5e-53 Score=492.43 Aligned_cols=394 Identities=18% Similarity=0.178 Sum_probs=292.5
Q ss_pred CCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC--------------CCCeeecCH
Q 004627 293 DAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA--------------DGRFKAVNW 357 (741)
Q Consensus 293 C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g--------------~g~~~~iSW 357 (741)
|...|++.|+|+||+|+||+|+++++.+ |.||++..+.+| |+||++||+|+| +|+|++|||
T Consensus 3 ~~~~~~~~v~v~dG~iv~v~g~~~~p~~----~~kg~~~~~~~y~pdRl~~PlkR~g~~~~~~~~~~g~rG~g~~~~ISW 78 (609)
T cd02769 3 ASHWGAFRARVKDGRIVGVRPFEEDPDP----SPLLDGVPDAVYSPTRIKYPMVRRGWLEKGPGSDRSLRGKEEFVRVSW 78 (609)
T ss_pred CcCcCceEEEEECCEEEEeecCCCCCCc----chhhhcchhhccChhhccCCceechhhhcCCCCCcccCCCCCeEEecH
Confidence 4555889999999999999999999876 789999999998 999999999963 689999999
Q ss_pred HHHHHHHHHHHHhcC----CCcEEEEECC-----CCCHHHHHHHHHHHHHcCCCcccCCCCcchh------hhhhhcCcc
Q 004627 358 RDALAVVAEVMLQAK----PEEIVGIAGR-----LSDAESMMALKDFLNRMGSNNVWCEGTGAQS------NADLRSGYI 422 (741)
Q Consensus 358 deAl~~iA~~Lk~i~----~~~i~~~~g~-----~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~------~~~~~~~~~ 422 (741)
||||++||++|++++ +++|+++.++ .... ...++++|++.+|+.+ .+....|.. ...+|....
T Consensus 79 dEAld~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~-~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~G~~~~ 156 (609)
T cd02769 79 DEALDLVAAELKRVRKTYGNEAIFGGSYGWSSAGRFHH-AQSLLHRFLNLAGGYV-GSVGDYSTGAAQVILPHVVGSMEV 156 (609)
T ss_pred HHHHHHHHHHHHHHHHhhCcHhhcccCcccccCccccc-chHHHHHHHhccCCcc-CCCCCccHHHHHhhhhheeCChhh
Confidence 999999999999985 4677543322 1111 2355789999998633 222233321 122232111
Q ss_pred c---CCCccc-cccCCEEEEEcCChhhhhhH---------HHHHHHHHHHhCCCEEEEEccCCCCCccccc-------cC
Q 004627 423 M---NTSISG-LEKADCFLLVGTQPRVEAAM---------VNARIRKTVRANNAKVGYIGPATDLNYDHQH-------LG 482 (741)
Q Consensus 423 ~---~~~~~d-i~~ad~Ill~G~Np~~~~p~---------~~~rlr~a~~~~gakiivIdp~~~~t~~~~~-------lG 482 (741)
+ +.++.| ++|||+||+||+||.+++|+ ...++++++ ++|+||||||||++.|+..++ +|
T Consensus 157 ~~~~~~~~~d~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar-~~GaklIvIDPr~t~tA~~add~~l~irPG 235 (609)
T cd02769 157 YTEQQTSWPVIAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALK-DRGIRFISISPLRDDTAAELGAEWIAIRPG 235 (609)
T ss_pred ccccCCChHHHHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHH-hCCCEEEEEcCCCCcchhhhcCcEeccCCC
Confidence 1 124444 79999999999999999763 345677764 599999999999999987532 25
Q ss_pred CCHH----------------------------------------------HHHHHH----cCHHHHHHHHhcCCCcEEEE
Q 004627 483 TGPK----------------------------------------------TLLEIA----EGRHPFFSAISNAKNPVIIV 512 (741)
Q Consensus 483 ~d~~----------------------------------------------~l~~i~----~gi~~lA~~l~~a~~~~Ii~ 512 (741)
+|.+ ++++++ +.|+++|++|++ ++++|++
T Consensus 236 TD~ALalam~~~ii~e~~~D~~Fv~~~t~Gfe~~~~~l~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~-~~~~i~~ 314 (609)
T cd02769 236 TDVALMLALAHTLVTEGLHDKAFLARYTVGFDKFLPYLLGESDGVPKTPEWAAAICGIPAETIRELARRFAS-KRTMIMA 314 (609)
T ss_pred cHHHHHHHHHHHHHHcCCccHHHHHHHccCHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhh-cCcEEEe
Confidence 5532 222222 238899999997 5688899
Q ss_pred cCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhc-----CC----CCCC-------------C-C
Q 004627 513 GAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDL-----GL----VPES-------------S-N 569 (741)
Q Consensus 513 G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~-----g~----~p~~-------------~-~ 569 (741)
|+|+.++.||.+..+++..|++++|++|++|+|+.......+..+.... .. .+.. . .
T Consensus 315 g~g~~~~~~g~~~~rai~~L~aLtGnig~pGgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~g 394 (609)
T cd02769 315 GWSLQRAHHGEQPHWMAVTLAAMLGQIGLPGGGFGFGYHYSNGGGPPRGAAPPPALPQGRNPVSSFIPVARIADMLLNPG 394 (609)
T ss_pred cccchhhhcccHHHHHHHHHHHHhCCCCCCCCccccCcCcCCCCCCCCCCCCCCcccccCCCcceeecHHHHHHHHhCCC
Confidence 9999999999999999999999999999999886544322111110000 00 0000 0 0
Q ss_pred ----------CccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCc-eEEcCC
Q 004627 570 ----------SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEG-TYENTE 630 (741)
Q Consensus 570 ----------~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~g-t~~n~e 630 (741)
..++||++|++|+||+. .++|++++|+|++|+|+|+|++|||||||+++|+|+++ ++.+.+
T Consensus 395 ~~~~~~~~~~~~~~ik~l~~~g~Np~~~~p~~~~~~~al~~ldf~V~~D~~~teTa~~ADiVLPaat~~E~~d~~~~~~~ 474 (609)
T cd02769 395 KPFDYNGKKLTYPDIKLVYWAGGNPFHHHQDLNRLIRAWQKPETVIVHEPFWTATARHADIVLPATTSLERNDIGGSGDN 474 (609)
T ss_pred CeeeecCcccCCCCEEEEEECCCChHhcCcCHHHHHHHHhcCCEEEEecCCCCcchhhccEEecCCcHhhhcCcccccCC
Confidence 01469999999999953 46789999999999999999999999999999999997 456777
Q ss_pred CeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC--C-CHHHHHHHHHHhC-------C-CCCCccccCCCCC
Q 004627 631 GCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY--D-TIGGIRSRIRTVA-------P-NLLHVDEREPATL 694 (741)
Q Consensus 631 g~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y--~-~~~~v~~~~~~~~-------p-~~~~~~~l~~~~~ 694 (741)
++++..+|+|+|+||+|+||+|+.+||++||.+..| . +.+++++++.+.. . .+.+|++|++.++
T Consensus 475 ~~~~~~~~~i~P~ge~k~d~~I~~~LA~rlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~e~l~~~g~ 549 (609)
T cd02769 475 RYIVAMKQVVEPVGEARDDYDIFADLAERLGVEEQFTEGRDEMEWLRHLYEESRAQAAARGVEMPSFDEFWAQGY 549 (609)
T ss_pred ceEEEeeeccCCcccccCHHHHHHHHHHHhCCcccCCCCCcHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHhCC
Confidence 889999999999999999999999999999997443 3 6777776654321 1 1236888876654
No 43
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=100.00 E-value=6e-51 Score=484.84 Aligned_cols=394 Identities=16% Similarity=0.133 Sum_probs=300.1
Q ss_pred ccceeeeeecCCCCCCCCCceEee------------------------------------------eCCEEEE--EcCCC
Q 004627 280 NWELKGTETIDVTDAVGSNIRIDS------------------------------------------RGPEVMR--ILPRL 315 (741)
Q Consensus 280 ~wel~~~~siC~~C~~gC~i~v~v------------------------------------------rdg~V~r--I~p~~ 315 (741)
|-+-+++.++|.+|.+|||..|++ +||++++ |.|++
T Consensus 6 ~~~~~~~~~~~~~~~~~cgy~~~~~~~~~~g~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~i~~d~ 85 (806)
T TIGR02693 6 PKNAKKYNQTCHFCIVGCGYHVYVWPVNKEGGVKPEQNAFGLDLSTPQPPLAGQSYTPTMHNVTVGRDGRQYNVVIVPDK 85 (806)
T ss_pred CCChhheeeeccEEEeccCceeeeCCCCCcCCCCccccceeccccccCCCcccccccccceeeEEccCCcEEEEEEeCCC
Confidence 445566677777777777776654 3478888 99999
Q ss_pred CCCCCccccccccccccccCC-C-----CCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcC----CCcEEEEE----C
Q 004627 316 NEDINEEWISDKTRFCYDGLK-S-----QRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGIA----G 381 (741)
Q Consensus 316 ~~~~n~g~iC~KGr~~~~~l~-~-----~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~----~~~i~~~~----g 381 (741)
++++|+|++|.||++..+.+| | +||++||+|+ +|+|++|||||||++||++|++++ +++|+++. |
T Consensus 86 ~~pvn~G~~C~rG~~~~~~~y~~~~~~~~RL~~Pl~R~-~g~~~~iSWdeAld~iA~~l~~i~~~~G~~sv~~~~~~~~g 164 (806)
T TIGR02693 86 ECVVNRGLYSIRGGTMALTVWSLDRGTQDRLTYPLLRV-GDQFQATSWDDALTLMALLTKKIRDRDGNDDIAVKCFDHGG 164 (806)
T ss_pred CCCCCCCccccchhhHHHhhhcccCCCCccccCCeEec-CCcEEEccHHHHHHHHHHHHHHHHhhcCCccEEEEecccCC
Confidence 999999999999998888776 5 8999999999 689999999999999999999875 57898863 4
Q ss_pred CCCCHHHHHHHHHHH-HHcCCCcccCCCCcc-----hhhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHH--HH
Q 004627 382 RLSDAESMMALKDFL-NRMGSNNVWCEGTGA-----QSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVN--AR 453 (741)
Q Consensus 382 ~~~~~e~~~~~~~l~-~~lGs~~~~~~~~~~-----~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~--~r 453 (741)
+....|+.+.+.+|+ ..+|++|++.+.+.| ....++|.. .++.+++|+++||+||+||+||.+++|.+. +.
T Consensus 165 ~~~~~e~~~~~~k~~~~~lgt~n~~~~~r~~~~s~~~~~~~~G~g-~~~~~~~D~~~Ad~iv~~G~Np~et~~~~~~~~~ 243 (806)
T TIGR02693 165 AGGGFENTWGAGKLFFAALSVKHIRIHNRPAYNSEVHGTREMGVG-ELNNTYEDARLADTIVLWGANSYETQTNYFLNHW 243 (806)
T ss_pred CCCchHHHHHHHHHHHHHcCCCcccccccccccccchhhhhhcCC-CCCCCHHHHHhCCEEEEECCChHHhhhhhhHhhh
Confidence 555677777666665 589999988765432 222334432 234578999999999999999999998632 22
Q ss_pred H---H---HHHHh--------CCCEEEEEccCCCCCccccc-------------cCCCHHH-------------------
Q 004627 454 I---R---KTVRA--------NNAKVGYIGPATDLNYDHQH-------------LGTGPKT------------------- 487 (741)
Q Consensus 454 l---r---~a~~~--------~gakiivIdp~~~~t~~~~~-------------lG~d~~~------------------- 487 (741)
+ + +++++ +|+|||+||||.+.|+..++ +|+|...
T Consensus 244 ~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~t~ta~~ad~~a~d~~~~l~i~PGTD~aL~~a~~~~Ii~~g~~D~~Fi 323 (806)
T TIGR02693 244 LPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRRTSSYTVAEQTAPDRVLHLRINLGTDYALFNALATYVWEKGWYDMAFI 323 (806)
T ss_pred hhhhhHHHHhhhhhcccccccCCceEEEEcCCCCchhhhhcccccccceEeccCCCcHHHHHHHHHHHHHHCCCcCHHHH
Confidence 2 2 22221 25799999999999876542 2666432
Q ss_pred ----------------------HHHHH----cCHHHHHHHHhcCC------CcEEEEcCCcccCCCHHHHHHHHHHHHHH
Q 004627 488 ----------------------LLEIA----EGRHPFFSAISNAK------NPVIIVGAGLFERKDKDAIFSTVEAIAKK 535 (741)
Q Consensus 488 ----------------------l~~i~----~gi~~lA~~l~~a~------~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~ 535 (741)
+++++ +.|+++|+.|++++ +++|++|.|+.++.++....+++.+|+++
T Consensus 324 ~~~~~t~gfd~~~~~~~~t~e~aa~itGV~~~~I~~~A~~~a~~k~~~~~~~~~~~~~~G~~~~~~~~~~~~ai~~L~~l 403 (806)
T TIGR02693 324 QARTHMTLFEDAVKSLKMSMAQAERITGVSRAEIEKAAEWIAKPKAGGKKRRTMTIYEKGIIWGNDNYDQVAALVQLAVA 403 (806)
T ss_pred hcccCCCCHHHHHHHccCCHHHHHHHHCcCHHHHHHHHHHHHhcccccCccceEEEecchheeccccHHHHHHHHHHHHH
Confidence 12221 23889999999876 67889999999999999999999999999
Q ss_pred cCCCCCCCcceeecCchhhhhhhhhcC-CCCCCC-------CCccCceEEEEeccCccC--------cc-----------
Q 004627 536 GNVIRPDWNGLNVLLLNAAQAAALDLG-LVPESS-------NSIESAKFVYLMGADDVD--------LE----------- 588 (741)
Q Consensus 536 ~G~~~~~g~g~~~l~~~~~~~g~~~~g-~~p~~~-------~~~~~ik~l~l~g~np~~--------~~----------- 588 (741)
||++|++|+|+..+.+.. .|..... ..|... ...+++|++|+++.||+. ++
T Consensus 404 tGniG~pGgG~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~i~~g~~k~l~v~g~Np~~s~pn~~~~~~~~~~~~~~v~~ 481 (806)
T TIGR02693 404 THNIGRPGTGCVRQGGHQ--EGYVRPPAIHRGGPPVYVDQFLIEGKGKFYWVWGCDPYLTTPNAQVFRKVIHERTEKVKD 481 (806)
T ss_pred hCCCCCCCCcccccCCcc--CCCcCCcccCCCCCHHHHHHHHhCCCceEEEEEecChhccCcChHHHHHHHhhhhHHHHH
Confidence 999999998876543211 1111000 001100 135778999999999942 11
Q ss_pred CC-------------------CC-CCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCCeeEeeccccCCCCCCcc
Q 004627 589 KL-------------------PN-DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARD 648 (741)
Q Consensus 589 al-------------------~k-~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg~vq~~~~av~P~gear~ 648 (741)
+| ++ .+|+|++|+|+++|+++||||||+++|+|++|++.|.++++|..+|+|+|+||+|+
T Consensus 482 al~~~~~~~~~~~~~~~~~a~~~~~~f~V~~D~~~t~ta~~ADvvLPaa~~~E~~~~~~n~~~~i~~~~~~v~p~gear~ 561 (806)
T TIGR02693 482 AMSAAGEGTIQEMVQKILDALYQGGLFLVVQDIYPTKTAEAAHLILPAAGWGEMNLTSMNGERRMRLYEKFMDPPGEAKP 561 (806)
T ss_pred HHHhcccccchhhhhhhhhhhccCCCEEEEEcCCCCccHhhCcEEEcCCcceeecCcEEcCccceEEeccccCCCccCcC
Confidence 12 22 25999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC---------------CCCCCCHHHHHHHHH
Q 004627 649 DWKIIRALSEVAGM---------------RLPYDTIGGIRSRIR 677 (741)
Q Consensus 649 d~~Il~~La~~lg~---------------~~~y~~~~~v~~~~~ 677 (741)
||+|+++||++||. .++|.+.++++++..
T Consensus 562 d~~I~~~La~rlg~~~~~~g~~~~~~~f~~f~~~~~e~~~~~~~ 605 (806)
T TIGR02693 562 DCLIAAWVANTIAELYRAEGKFEEAKKFEGFDWKTEEDAFLDGA 605 (806)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccccCCCCCHHHHHHHHH
Confidence 99999999999971 156788899887643
No 44
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=100.00 E-value=1.4e-51 Score=493.03 Aligned_cols=373 Identities=24% Similarity=0.283 Sum_probs=306.9
Q ss_pred eeecCCCCCCCCCceEeeeCCEEEE--EcCCCCCCCCccccccccccccccCC-CCCCCCcEEeC----CCCCeeecCHH
Q 004627 286 TETIDVTDAVGSNIRIDSRGPEVMR--ILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG----ADGRFKAVNWR 358 (741)
Q Consensus 286 ~~siC~~C~~gC~i~v~vrdg~V~r--I~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~----g~g~~~~iSWd 358 (741)
+.++|++|+.+|++.+++++|++++ |.+++.++.|.|.+|.||+...+.++ ++||++||+|. |+|+|++||||
T Consensus 41 ~~~~C~~C~~~C~i~~~v~~g~~~~~~~~~~~~~p~~~g~~C~kg~~~~~~~~~~~RL~~Pl~r~~g~rg~g~f~~ISWd 120 (765)
T COG0243 41 VKTICPGCGVGCGIRVHVKDGKVVRITIEGDPDHPINRGRLCAKGARGRERVYSPDRLKYPLLRRVGKRGEGKFVRISWD 120 (765)
T ss_pred cccccccCCCCCceEEEEECCEEEeecccCCcccccccccccccCcceeeeeeCchhhcCccccCCCCCCCCceEEecHH
Confidence 7899999999999999999999999 99999999999999999999999887 99999997665 37899999999
Q ss_pred HHHHHHHHHH-HhcCCCcEEEEECCCCC--HHHHHHHHHHHHH-cCCCcccCCCCcchhh------hhhhcCcccCCCcc
Q 004627 359 DALAVVAEVM-LQAKPEEIVGIAGRLSD--AESMMALKDFLNR-MGSNNVWCEGTGAQSN------ADLRSGYIMNTSIS 428 (741)
Q Consensus 359 eAl~~iA~~L-k~i~~~~i~~~~g~~~~--~e~~~~~~~l~~~-lGs~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 428 (741)
||+++|++++ ++ .+..+.++... +|..+..++|++. +|++|+++..++|... ..+|.. ....++.
T Consensus 121 eA~~~ia~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~C~~~~~~~~~~~~G~~-~~~~~~~ 195 (765)
T COG0243 121 EALDLIAAKLLPR----IIGFYGSGALTTGNEAGYLAGKLARAFLGGNNIDHCGRYCHAAAAAGLPYTFGSG-AATGSYP 195 (765)
T ss_pred HHHHHHHHHhcch----hhhccCchhhccCccchHHHhHHHHhcccCCCcCCCccccccchhhhhcccccCC-CCCccHh
Confidence 9999999994 54 45556655444 7888888999996 9999999998887333 344432 2235788
Q ss_pred ccccCCEEEEEcCChhhhhhHHHHH--HHHHHHhCCCEEEEEccCCCCCccccc------cCCCHH--------------
Q 004627 429 GLEKADCFLLVGTQPRVEAAMVNAR--IRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPK-------------- 486 (741)
Q Consensus 429 di~~ad~Ill~G~Np~~~~p~~~~r--lr~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~-------------- 486 (741)
|+++||+||+||+|+.+++|++..+ ..++.+++|+|||+|||+++.|+..++ +|+|.+
T Consensus 196 D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l~irPGTD~Al~~gi~~~li~~~~ 275 (765)
T COG0243 196 DIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWLPIRPGTDAALALGIAHVLIEENL 275 (765)
T ss_pred hHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCccccCCCcHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999988753 333334588899999999999987664 255532
Q ss_pred --------------------------------HHHHH---HcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHH
Q 004627 487 --------------------------------TLLEI---AEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEA 531 (741)
Q Consensus 487 --------------------------------~l~~i---~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~ 531 (741)
+++++ .+.|+++|++|++++++++++|+|++||.+|.+.++++.+
T Consensus 276 ~D~~Fl~~~t~~g~~~~~~~~~~~~~~~~t~e~~~~itGv~~~I~~~A~~~a~~~~~~~~~g~G~~qh~~G~~~~~ai~~ 355 (765)
T COG0243 276 YDEEFLAKYTNVGFDEFAYLLGLEDAEAKTPEWAEAITGVAEEIRQLARLFAAAKPVTILWGMGIQQHANGEQTVRAIAN 355 (765)
T ss_pred ccHHHHHHHhhcccchhhhhccccccccCCHHHHHHhhhHHHHHHHHHHHHhcCCceEEeeccchhHHHHhHHHHHHHHH
Confidence 22222 1237899999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCcceeecCchhhhhh-hhhcCCC---------------------------CCCC----C---CccCceE
Q 004627 532 IAKKGNVIRPDWNGLNVLLLNAAQAA-ALDLGLV---------------------------PESS----N---SIESAKF 576 (741)
Q Consensus 532 L~~~~G~~~~~g~g~~~l~~~~~~~g-~~~~g~~---------------------------p~~~----~---~~~~ik~ 576 (741)
|++++|++|++|+|++.++++.|..| ..++|.. |+.. . ..++||+
T Consensus 356 L~ll~Gnig~pGgg~~~~~g~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ik~ 435 (765)
T COG0243 356 LALLTGNIGKPGGGVFPLRGHSNAQGGARDVGGLVKPLPGLPVVRAKTAIPWGRPTDAAAKPGLSTADRALLEGPYPIKA 435 (765)
T ss_pred HHHHhCCCCCCCCCCCcccCcccccccccccccCCCCCccccccchhhhhhhhCcchhhhCCcceeecccccccCCCeEE
Confidence 99999999999999888877766655 3222210 0000 0 1348999
Q ss_pred EEEeccCccC--------ccCCCCC-CeEEEEcccCCccccccceeccCCCCCCCCceEEcCCC-eeEeeccccCCCCCC
Q 004627 577 VYLMGADDVD--------LEKLPND-AFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG-CTQQTLPAVPTVGDA 646 (741)
Q Consensus 577 l~l~g~np~~--------~~al~k~-~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg-~vq~~~~av~P~gea 646 (741)
+|++|+||+. ..++.+. +|+|++|+|+|+|+.+||+|||+++|+|++|.+.|.+. ++|..+++++|+||+
T Consensus 436 l~~~~~Np~~~~p~~~~~~~~~~~~~~~vVv~D~~~t~Ta~~ADivLPa~~~~E~~~~~~~~~~~~v~~~~~~v~P~gea 515 (765)
T COG0243 436 LFVYGGNPVVSAPDDRNVKKALLRDDEFVVVIDIFMTETAKYADIVLPATTFLEKDDIYTNAGRSYVQLRRKVVEPPGEA 515 (765)
T ss_pred EEEeCCCchhcCchhhHHHHHHhcCCCeEEEEccCCCHHHHhhhhhCCccccccccCccccCCcceEEEeeeccCCCccc
Confidence 9999999963 1233344 49999999999999999999999999999999999999 999999999999999
Q ss_pred ccHHHHHHHHHHHhCCC
Q 004627 647 RDDWKIIRALSEVAGMR 663 (741)
Q Consensus 647 r~d~~Il~~La~~lg~~ 663 (741)
|+||||+.+|+++++..
T Consensus 516 ~~d~~ii~~la~~~~~~ 532 (765)
T COG0243 516 RPDYWIIIELAKRLLGE 532 (765)
T ss_pred cccHHHHHHHHHHhccc
Confidence 99999999999998664
No 45
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=100.00 E-value=3.8e-50 Score=485.99 Aligned_cols=380 Identities=14% Similarity=0.105 Sum_probs=287.8
Q ss_pred eeeeeecCCCCCCCCCceEeee--CCEEEEEcCCCCCCCC--------------------------cccccccccccccc
Q 004627 283 LKGTETIDVTDAVGSNIRIDSR--GPEVMRILPRLNEDIN--------------------------EEWISDKTRFCYDG 334 (741)
Q Consensus 283 l~~~~siC~~C~~gC~i~v~vr--dg~V~rI~p~~~~~~n--------------------------~g~iC~KGr~~~~~ 334 (741)
.+.++|+|.+|..+|+|+|+|. +|+|+||+||+.||.| .|.+|.||++..+.
T Consensus 72 ~~~~~t~C~~C~~~Cgl~v~V~~~~g~v~kI~Gnp~~p~s~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~C~KG~a~~~~ 151 (1031)
T PRK14991 72 QRVANTQCLGCWTQCGVRVRVDNATNKILRIAGNPYHPLSTDHHIDMSTPVKEAFESLSGESGLEGRSTACARGNAMLEQ 151 (1031)
T ss_pred ceEEeeECCCCcCCCCeEEEEECCCCeEEEeeCCCCCccccCCCCcccCCHHHHHhhhccccccccCCCcccchhhhHhh
Confidence 3578999999999999999994 6999999999999988 49999999999999
Q ss_pred CC-CCCCCCcEEeCC---CCCeeecCHHHHHHHHHH-----------HHHhcC--------------CCcEEEEECCCCC
Q 004627 335 LK-SQRLNDPMIRGA---DGRFKAVNWRDALAVVAE-----------VMLQAK--------------PEEIVGIAGRLSD 385 (741)
Q Consensus 335 l~-~~RL~~PliR~g---~g~~~~iSWdeAl~~iA~-----------~Lk~i~--------------~~~i~~~~g~~~~ 385 (741)
+| |+||++||+|+| +|+|++|||||||++|++ +|++++ ++++.++.+...+
T Consensus 152 ~y~p~Rl~~PLkR~g~RGeg~w~~ISWdeAl~eIaegg~lf~e~~v~~L~~i~~~~~~id~~~p~~Gp~a~~~~~~~~~~ 231 (1031)
T PRK14991 152 LDSPYRVLQPLKRVGKRGSGKWQRISFEQLVEEVVEGGDLFGEGHVDGLRAIRDLDTPIDAKNPEYGPKANQLLVTNASD 231 (1031)
T ss_pred hhCcccccCCeeccCCCCCCceeEccHHHHHHHHHhccccccchhHHHHHHHHhhhccccccchhhCceeEEEEEEecCC
Confidence 98 999999999974 679999999999999999 898774 3566554442222
Q ss_pred HHHHHHHHHHH-HHcCCCcccCCCCcchhhhhhhcCccc------CCCccccccCCEEEEEcCChhhhhhH---HHHHHH
Q 004627 386 AESMMALKDFL-NRMGSNNVWCEGTGAQSNADLRSGYIM------NTSISGLEKADCFLLVGTQPRVEAAM---VNARIR 455 (741)
Q Consensus 386 ~e~~~~~~~l~-~~lGs~~~~~~~~~~~~~~~~~~~~~~------~~~~~di~~ad~Ill~G~Np~~~~p~---~~~rlr 455 (741)
.....++++|+ +.+|+.|++.+.++|.....++...++ .....|+++||+||+||+||.+++.. ...++.
T Consensus 232 ~g~~~~~~rf~~~~~Gt~n~~~~~~~C~~~~~~g~~~~~g~~~~~~~~~~D~~~a~~il~~G~Np~~s~~~~~~~~~~l~ 311 (1031)
T PRK14991 232 EGRDAFIKRFAFNSFGTRNFGNHGSYCGLAYRAGSGALMGDLDKNPHVKPDWDNVEFALFIGTSPAQSGNPFKRQARQLA 311 (1031)
T ss_pred cchHHHHHHHHHHhcCCCCccCCCccchHHHHhhHHHhccCCCCCCCccchhhcCcEEEEeCcChhHhCCchHHHHHHHH
Confidence 23355678997 589999999888888554433322222 23467999999999999999998643 345577
Q ss_pred HHHHhCCCEEEEEccCCCCCc----cccc------cCCCH----------------------------------------
Q 004627 456 KTVRANNAKVGYIGPATDLNY----DHQH------LGTGP---------------------------------------- 485 (741)
Q Consensus 456 ~a~~~~gakiivIdp~~~~t~----~~~~------lG~d~---------------------------------------- 485 (741)
+++.+.|+|+||||||++.|+ ..++ +|+|.
T Consensus 312 ~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~ALalgmi~~Iie~~~yD~~fl~~~~~~a~~~~ge~~~Tna 391 (1031)
T PRK14991 312 NARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSALAMGMIRWIIDNQRYNADYLAQPGVAAMQAAGEASWTNA 391 (1031)
T ss_pred HHHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHHHHHHHHHHHHcCCcCHHHHhchhhhhhhhccccccccC
Confidence 776534599999999998863 1111 13321
Q ss_pred --------------------------------------------------------------------------------
Q 004627 486 -------------------------------------------------------------------------------- 485 (741)
Q Consensus 486 -------------------------------------------------------------------------------- 485 (741)
T Consensus 392 ~~LV~~d~~~~~~g~~lr~~d~g~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~l~~~~~v~~~dG~~v~v~~~f~~ 471 (1031)
T PRK14991 392 THLVIADPGHPRYGQFLRASDLGLPFEGEARGDGEDTLVVDAADGELVPATQAQPARLFVEQYVTLADGQRVRVKSSLQL 471 (1031)
T ss_pred ceEEEecCCCccccceeehhhcccccccccccCCCCCEEEECCCCcccccccccccccccceeEeccCCCeeeeeEHHHH
Confidence
Q ss_pred ----------HHHHHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCc
Q 004627 486 ----------KTLLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLL 551 (741)
Q Consensus 486 ----------~~l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~ 551 (741)
+++++++ +.|+++|++|+++++.+++++.|..+|.||.++.+++..|++++||++++|+++... +
T Consensus 472 lke~~~~~Tpe~~a~i~GVp~e~I~~lAr~fa~~~~~~~~~~~G~~~~~nG~~~~~Ai~~L~aLtGni~~~GG~~~~~-~ 550 (1031)
T PRK14991 472 LKEAARKLSLAEYSEQCGVPEAQIIALAEEFTSHGRKAAVISHGGTMSGNGFYNAWAIMMLNALIGNLNLKGGVVVGG-G 550 (1031)
T ss_pred HHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhcCCceEEEecccceeccHHHHHHHHHHHHHHhCCCCCCCCcccCC-C
Confidence 1122222 238999999999988888899999999999999999999999999999988643211 0
Q ss_pred hhhh--------hhh------------------------h----hcCC--CCC-------CC------------CCccCc
Q 004627 552 NAAQ--------AAA------------------------L----DLGL--VPE-------SS------------NSIESA 574 (741)
Q Consensus 552 ~~~~--------~g~------------------------~----~~g~--~p~-------~~------------~~~~~i 574 (741)
..+. .+. . ..|. .|. .. ....+|
T Consensus 551 ~~~~~~~g~~~~~~~~~g~~~p~g~~~~r~~~~~~~~~~~~~~~~~g~~~~P~~~~~~p~~~~~~~e~l~~~~~g~Py~i 630 (1031)
T PRK14991 551 KFPGFGDGPRYNLASFAGKVKPKGVSLSRSKFPYEKSSEYRRKVEAGQSPYPAKAPWYPFVAGLLTEMLTAALEGYPYPL 630 (1031)
T ss_pred ccCccCCCccccccccccccccccccccccccccccchHHhhhhhcCCCCCcccccccccccchHHHHHHHHHcCCCCCc
Confidence 0000 000 0 0111 110 00 022379
Q ss_pred eEEEEeccCccC---------ccCCC---CCCeEEEEcccCCccccccceeccCCCCCCCCceEEcCCC----eeEeecc
Q 004627 575 KFVYLMGADDVD---------LEKLP---NDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEG----CTQQTLP 638 (741)
Q Consensus 575 k~l~l~g~np~~---------~~al~---k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~eg----~vq~~~~ 638 (741)
|++|++++||+. .++|+ +++|+|++|+|+|||++|||||||+++|+|++|....+.+ ..+..+|
T Consensus 631 kali~~~~NP~~s~p~~~~~~~~aL~d~~~L~f~V~~D~~~teTa~~AD~VLP~~~~~E~~~~~~~~~~~~~~~~~~r~p 710 (1031)
T PRK14991 631 KAWINHMSNPIYGVPGLRAVIEEKLKDPKKLPLFISIDAFINETTALADYIVPDTHTYESWGFTAPWGGVPTKASTARWP 710 (1031)
T ss_pred eEEEEcCCChhhcCCcHHHHHHHHhcccccCCEEEEEeCCcCchHhhCcEEecCCCchhhccCcccccccCccceeeEec
Confidence 999999999952 24674 7999999999999999999999999999999986543333 3456779
Q ss_pred ccCCCCCCccHHH------HHHHHHHHhCCC
Q 004627 639 AVPTVGDARDDWK------IIRALSEVAGMR 663 (741)
Q Consensus 639 av~P~gear~d~~------Il~~La~~lg~~ 663 (741)
+|+|++++++||+ |+.+||++||++
T Consensus 711 vveP~~e~~~d~~~~~~e~i~~~LAkrlGl~ 741 (1031)
T PRK14991 711 VVEPRTAKTADGQPVCMESFLIAVAKRLQLP 741 (1031)
T ss_pred ccCCCcCcCCccchhhHHHHHHHHHHHcCCC
Confidence 9999999999988 899999999974
No 46
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=100.00 E-value=1.4e-49 Score=445.91 Aligned_cols=353 Identities=16% Similarity=0.169 Sum_probs=270.2
Q ss_pred ecCCCCCCCCC-ceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCCCCCeeecCHHHHHHHHH
Q 004627 288 TIDVTDAVGSN-IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGADGRFKAVNWRDALAVVA 365 (741)
Q Consensus 288 siC~~C~~gC~-i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g~g~~~~iSWdeAl~~iA 365 (741)
++|++|+.||+ +.++++||+|++++ ++|+|||+.++.+| ++||++||+|+ +|+|++||||||++.++
T Consensus 2 ~~C~~C~~gC~~l~v~v~~g~v~~v~----------~~C~kg~~~~~~~~~~~Rl~~Pl~R~-~g~~~~isWdeAl~~ia 70 (421)
T TIGR03129 2 VVCPFCGCLCDDIEVEVEGNKIVKVE----------NACRIGAAKFKEAEESHRITRPMIRK-NGDGKEVSYEEAIEKAA 70 (421)
T ss_pred cccCCcccccCeEEEEEECCEEEEEe----------cCCcccHHHHhhccCCcccCCCeEcC-CCCeeeCChHHHHHHHH
Confidence 68999999998 99999999999995 59999999999998 99999999998 78999999999999999
Q ss_pred HHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhh--hhhcCcccCCCccccc-cCCEEEEEcCC
Q 004627 366 EVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNA--DLRSGYIMNTSISGLE-KADCFLLVGTQ 442 (741)
Q Consensus 366 ~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~--~~~~~~~~~~~~~di~-~ad~Ill~G~N 442 (741)
++|++++. ..++.++..+.|..+++++|++.+|+ ++++..+.|.... .+........++.|++ +||+||+||+|
T Consensus 71 ~~l~~~~~--~~~~~~~~~~~e~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n 147 (421)
T TIGR03129 71 EILKNAKR--PLIYGWSSTSCEAQRAGLELAEKLGA-VIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADVIIYWGTN 147 (421)
T ss_pred HHHHhhcC--CeEEEcccCCHHHHHHHHHHHHHHCC-CccccchhccccHHHHHHhcCCccccHHHHhhcCCEEEEEccC
Confidence 99999864 34566666788888999999999998 4554444332111 1111122334678997 69999999999
Q ss_pred hhhhhhHHHHHH--------HHHHHhCCCEEEEEccCCCCCccccc------cCCCHHHHHHHH----------------
Q 004627 443 PRVEAAMVNARI--------RKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA---------------- 492 (741)
Q Consensus 443 p~~~~p~~~~rl--------r~a~~~~gakiivIdp~~~~t~~~~~------lG~d~~~l~~i~---------------- 492 (741)
|.+++|.+..|+ +++. ++|++|++|||+.+.|+..++ +|+|...+..+.
T Consensus 148 ~~~~~p~~~~r~~~~~~~~~~~~~-~~g~~lividp~~s~t~~~ad~~l~i~pgtd~~l~~~l~~~l~~~~~~~~~~~gv 226 (421)
T TIGR03129 148 PMHAHPRHMSRYSVFPRGFFTQRG-REDRTVIVVDPRKTDTAKLADYHLQIKPGSDYELISALRAVLRGKEPQPEEVAGI 226 (421)
T ss_pred ccccCchHHhhhhhhhhhhhhhcc-cCCCEEEEECCCCCCcchhhcceeccCCCCcHHHHHHHHHHHccCCcchhhhcCC
Confidence 999999877654 2222 578999999999999987665 388876543332
Q ss_pred --cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhh-----hcCC--
Q 004627 493 --EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAAL-----DLGL-- 563 (741)
Q Consensus 493 --~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~-----~~g~-- 563 (741)
+.|+++|+.|+++++++|++|.|..++.++......+..+...++.+++ .++..+.+..|..|+. ..|+
T Consensus 227 ~~~~i~~la~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~l~g~~~~~G~~~~~~~~~g~~~ 304 (421)
T TIGR03129 227 PKEKILELAEILKNAKFGVIFFGLGLTSSLGKHRNVEIAIELVKDLNKYTK--FTIIPMRGHYNVAGFNQVLTWETGYPF 304 (421)
T ss_pred CHHHHHHHHHHHHhCCceEEEEecccccccCcchHHHHHHHHHHHhCcccc--eeeeeCcCcCCccccccccccccCCCc
Confidence 1278999999999999999999998776555544444444444444322 1233333333332221 1111
Q ss_pred -----------CCCCC-----CCccCceEEEEeccCccC------ccCCCCCCeEEEEcccCCccccccceeccCCC-CC
Q 004627 564 -----------VPESS-----NSIESAKFVYLMGADDVD------LEKLPNDAFVVYQGHHGDHGVYRANVILPASA-FS 620 (741)
Q Consensus 564 -----------~p~~~-----~~~~~ik~l~l~g~np~~------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~-~~ 620 (741)
.|... ...+++|++|++|+||+. .++|++++ +|++|+|+|||+++||||||+++ |+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~g~i~~l~~~g~Np~~~~p~~~~~al~~~~-~Vv~d~~~teTa~~ADvvLP~~~~~~ 383 (421)
T TIGR03129 305 GVDFSRGYPRYNPGETTTVDLLKRKEVDAALIIGSDPGAHFPQDAVKHLAEIP-VIVIDPHPTPTTEIADVVIPVAIDGI 383 (421)
T ss_pred cccHhhcCCCCCCCcchHHHHHhcCCCCEEEEeCCChhhhCcHHHHHhhccCC-EEEECCCCCCccccCCEEecCCccce
Confidence 11000 035789999999999953 46788887 58999999999999999999997 89
Q ss_pred CCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHh
Q 004627 621 EKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 660 (741)
Q Consensus 621 Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~l 660 (741)
|++|+++|.+|++|..+|+++|++ |+||+||++|+++|
T Consensus 384 E~~g~~~~~~~~~~~~~~~v~p~~--~~~~~i~~~La~~~ 421 (421)
T TIGR03129 384 EAGGTAYRMDNVPIRLRKVIESPE--PSDEEILKKILERV 421 (421)
T ss_pred ecCccEEecCCeEEEeeccCCCCC--CCHHHHHHHHHhhC
Confidence 999999999999999999999998 99999999999986
No 47
>PRK09939 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.9e-49 Score=461.21 Aligned_cols=360 Identities=16% Similarity=0.219 Sum_probs=298.3
Q ss_pred ccccccccccCC-CCCCCCcEEeC-CCCCeeecCHHHHHHHHHHHHHhcC-CCcEEEEECCCCCHHHHHHHHHHHHHcCC
Q 004627 325 SDKTRFCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDALAVVAEVMLQAK-PEEIVGIAGRLSDAESMMALKDFLNRMGS 401 (741)
Q Consensus 325 C~KGr~~~~~l~-~~RL~~PliR~-g~g~~~~iSWdeAl~~iA~~Lk~i~-~~~i~~~~g~~~~~e~~~~~~~l~~~lGs 401 (741)
..--++++.+++ ++||++||+|. ++|+|++|||||||++||++|+++. ++++++|+|+..++|+.+++++|++.+|+
T Consensus 93 ~~l~~~~~~~l~~~~RL~~Pl~r~~g~~~~~~ISWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gt 172 (759)
T PRK09939 93 QSLLTWGDHELEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGS 172 (759)
T ss_pred HHHhhhcccccCCCCcccCCeEecCCCCcEEEccHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCC
Confidence 333467788887 99999999997 4789999999999999999999985 78999999999999999999999999999
Q ss_pred CcccCCCCcchhh------hhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCC-
Q 004627 402 NNVWCEGTGAQSN------ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL- 474 (741)
Q Consensus 402 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~- 474 (741)
+|++...+.|... ..+|.. ....+++|+++||+||+||+||..++|.+..+|++++ ++|+|||+|||+.+.
T Consensus 173 nn~~~~s~~C~~~~~~~l~~~~G~g-~~t~~l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~-~rGakiIvIDPr~~~g 250 (759)
T PRK09939 173 NNFPDCSNMCHEPTSVGLAASIGVG-KGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALV-KRGAKMIAINPLQERG 250 (759)
T ss_pred cccCCCCCCCchHHHHHHHHhcCCC-CCCCCHHHHhhCCEEEEeCCChHHHHHHHHHHHHHHH-HCCCEEEEECCCCccc
Confidence 9998777776322 223332 2234789999999999999999999999999999885 599999999997743
Q ss_pred -----------------Cccccc------cCCCHHHH-------------------------------------------
Q 004627 475 -----------------NYDHQH------LGTGPKTL------------------------------------------- 488 (741)
Q Consensus 475 -----------------t~~~~~------lG~d~~~l------------------------------------------- 488 (741)
++..++ +|+|.+.+
T Consensus 251 l~rft~p~~~~~~~~~~ta~~Ad~~l~irPGtD~ALl~gm~~~li~~~~~~~~~~~~~~~D~~FI~~~t~Gfe~~~~~v~ 330 (759)
T PRK09939 251 LERFTAPQNPFEMLTNSETQLASAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVL 330 (759)
T ss_pred ccccccccccchhccccchhhhCeeeCCCCChHHHHHHHHHHHHHHCCCcccccccccccCHHHHHHhcCCHHHHHHHHh
Confidence 333332 24443321
Q ss_pred -------HHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhh
Q 004627 489 -------LEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAA 557 (741)
Q Consensus 489 -------~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g 557 (741)
++++ +.|+++|+.|+++++++|++|+|+.+|.+|...++++.+|+.++|++|++|+|+.++.++.|.+|
T Consensus 331 ~~~~e~v~~~tGv~~~~I~~~A~~~a~a~~~ii~~gmGitqh~~G~~~v~~i~nL~lltGniGrpGaG~~plrG~~NvqG 410 (759)
T PRK09939 331 NSEWKDIERISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLRGHSNVQG 410 (759)
T ss_pred hCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEEeCCcccccCcHHHHHHHHHHHHHHhCCCCCCCcccccCcCcccCCC
Confidence 1111 12789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCC-------------------CC----------CccCceEEEEeccCccC--------ccCCCCCCeEEEEc
Q 004627 558 ALDLGLVPES-------------------SN----------SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQG 600 (741)
Q Consensus 558 ~~~~g~~p~~-------------------~~----------~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d 600 (741)
+.++|..+.. .+ ..++||++|++|.||+. .++|++++|+|++|
T Consensus 411 ~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~G~~~~~~~~a~~~G~ikal~~~G~Np~~s~Pd~~~~~~AL~~ld~~V~~d 490 (759)
T PRK09939 411 DRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQAICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVA 490 (759)
T ss_pred ccccCCCCCCCHHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCceEEEEeCCChhccCcCHHHHHHHHhcCCcEEEEe
Confidence 8888764311 00 36789999999999952 46899999999999
Q ss_pred ccCCc----cccccceeccCCCCCCC----Cc----eEEcCCCeeEeeccccCCCCC-CccHHHHHHHHHHHhCCC--CC
Q 004627 601 HHGDH----GVYRANVILPASAFSEK----EG----TYENTEGCTQQTLPAVPTVGD-ARDDWKIIRALSEVAGMR--LP 665 (741)
Q Consensus 601 ~~~~e----ta~~ADvVLP~a~~~Ek----~g----t~~n~eg~vq~~~~av~P~ge-ar~d~~Il~~La~~lg~~--~~ 665 (741)
.++|+ |+++ |||||+++++|+ .| |+.|.++++|..+++++|+|+ .|+||+|+.+||++|.-+ ++
T Consensus 491 ~~ln~~~~~t~~~-dvVLP~~~~~E~d~~~~g~q~~t~~~~~~~v~~s~~~~~P~g~~~~se~~I~~~lA~~~~~~~~~~ 569 (759)
T PRK09939 491 TKLNRSHLLTARH-SYILPVLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQSVVA 569 (759)
T ss_pred eeecCcccchhhh-cEEecCCCccccccccCCCceeEEEcCCceEEccCCCCCCCCccccCHHHHHHHHHHHhccCCCCC
Confidence 99996 7777 999999999998 45 788999999999999999997 799999999999998322 44
Q ss_pred CC----CHHHHHHHHHHhCCCCCCcc
Q 004627 666 YD----TIGGIRSRIRTVAPNLLHVD 687 (741)
Q Consensus 666 y~----~~~~v~~~~~~~~p~~~~~~ 687 (741)
|. +.+++++++.+..|.+..|+
T Consensus 570 ~~~~~~~~~~i~~~i~~~~p~~~~~~ 595 (759)
T PRK09939 570 WEYLVEDYDRIRNDIEAVLPEFADYN 595 (759)
T ss_pred cccchhCHHHHHHHHHHhCCCccCHH
Confidence 54 56789999988888775554
No 48
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=100.00 E-value=2.4e-49 Score=473.89 Aligned_cols=362 Identities=17% Similarity=0.201 Sum_probs=270.7
Q ss_pred CCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeCC--------------CCCeeecCHHHHH
Q 004627 297 SNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA--------------DGRFKAVNWRDAL 361 (741)
Q Consensus 297 C~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~g--------------~g~~~~iSWdeAl 361 (741)
|++.++|+||+|++|+|+++|+.+. .+|+...+.+| |+||++||+|+| +|+|++|||||||
T Consensus 5 ~~l~~~V~dG~i~~v~g~~~~p~~~----~~~~~~~~~~y~pdRl~~PL~R~g~~~~~~~~~~~~rG~g~f~~iSWDEAl 80 (770)
T TIGR00509 5 GVFTATVQDGRIVAVTPFESDPNPT----PMLEGVPDQVYSESRIKYPMVRKGFLENGVKSDRSGRGREEFVRVSWDEAL 80 (770)
T ss_pred CceEEEEECCEEEEeecCCCCCCcc----HhHhcchhhccChhhccCCeeecchhhccCCCccccCCCCCeEEecHHHHH
Confidence 7899999999999999999988764 34667788887 999999999964 4899999999999
Q ss_pred HHHHHHHHhcC----CCcEEEEEC-----CCCCHHHHHHHHHHHHHcCCCcccCCCCcch------hhhhhhcCcccC--
Q 004627 362 AVVAEVMLQAK----PEEIVGIAG-----RLSDAESMMALKDFLNRMGSNNVWCEGTGAQ------SNADLRSGYIMN-- 424 (741)
Q Consensus 362 ~~iA~~Lk~i~----~~~i~~~~g-----~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~------~~~~~~~~~~~~-- 424 (741)
++||++|++++ +++|+++.+ +.... +.+++++|++.+|+.+. +...+|. ....+|....++
T Consensus 81 ~~IA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~g~~ 158 (770)
T TIGR00509 81 DLVAEELKRVRKTHGPSAIFAGSYGWKSAGRLHN-ASTLLQRMLNLLGGYVG-HAGDYSTGAAQVIMPHVVGDMEVYEQQ 158 (770)
T ss_pred HHHHHHHHHHHHhcCChhheecccCcccCCcccc-cHHHHHHHHHhcCCCcC-CCCCcchhhHhhccCceeecccccCCc
Confidence 99999999876 467765431 11222 24567999999986432 2223321 122233321122
Q ss_pred CCcc-ccccCCEEEEEcCChhhhhhH--------HHHHHHHHHHhCCCEEEEEccCCCCCccc-cc------cCCCHH--
Q 004627 425 TSIS-GLEKADCFLLVGTQPRVEAAM--------VNARIRKTVRANNAKVGYIGPATDLNYDH-QH------LGTGPK-- 486 (741)
Q Consensus 425 ~~~~-di~~ad~Ill~G~Np~~~~p~--------~~~rlr~a~~~~gakiivIdp~~~~t~~~-~~------lG~d~~-- 486 (741)
.+.. ++++||+||+||+||.+++|. ...++++++ ++|+||||||||++.|+.. ++ +|+|..
T Consensus 159 ~~~~~~~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~-~~G~klIvIDPr~t~tA~~aaD~~l~irPGTD~AL~ 237 (770)
T TIGR00509 159 TTWPVILENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLK-AKGKRVISIDPVRTETAEFFGAEWIPPNPQTDVALM 237 (770)
T ss_pred CCcHHHHhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHH-HcCCEEEEEcCCCCcchhhccCeEeCcCCCcHHHHH
Confidence 2233 479999999999999999863 346777774 5999999999999999875 33 266532
Q ss_pred --------------------------------------------HHHHHH----cCHHHHHHHHhcCCCcEEEEcCCccc
Q 004627 487 --------------------------------------------TLLEIA----EGRHPFFSAISNAKNPVIIVGAGLFE 518 (741)
Q Consensus 487 --------------------------------------------~l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~ 518 (741)
++++++ +.|+++|++|+++ +++|++|+|+.+
T Consensus 238 lam~~~ii~e~l~D~~fi~~~t~gfe~~~~~l~~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~~-~~~i~~g~g~~~ 316 (770)
T TIGR00509 238 LGLAHTLVTEGLYDKDFLAKYTSGFEKFLPYLLGETDGTPKTAEWASKITGVPAETIKELARLFASK-RTMLAAGWSMQR 316 (770)
T ss_pred HHHHHHHHHcccccHHHHHHHcccHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhc-cceeeccchhhh
Confidence 222222 2289999999976 578888999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhh-----hh-hhhc------------------CCCC---------
Q 004627 519 RKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQ-----AA-ALDL------------------GLVP--------- 565 (741)
Q Consensus 519 ~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~-----~g-~~~~------------------g~~p--------- 565 (741)
+.+|.+..+++..|+++||++|++|+|++......+. .+ .+.. ...|
T Consensus 317 ~~~g~~~~rai~~L~altGnig~~Ggg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 396 (770)
T TIGR00509 317 MQHGEQPHWMLVTLAAMLGQIGLPGGGFGFSYHYSGGGTPSASGPALSQGSNSVSTKAPEWLDDGGASVIPVARISDALL 396 (770)
T ss_pred hhcchHHHHHHHHHHHHhCcCCCCCcccccccCcCCCCCCCccCCCCcccCCccccccchhhhccccccccHHHHHHHhh
Confidence 9999999999999999999999999887543221111 00 0000 0011
Q ss_pred --CC-------CCCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceE--
Q 004627 566 --ES-------SNSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTY-- 626 (741)
Q Consensus 566 --~~-------~~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~-- 626 (741)
+. ....++||++|++|+||+. .++|++++|+|++|+|+|+|++|||||||+++|+|+++..
T Consensus 397 ~~~~~~~~~~~~~~~~~ik~l~v~g~Np~~s~p~~~~~~~aL~~ldf~Vv~D~f~teTa~~ADiVLPaat~lE~~d~~~~ 476 (770)
T TIGR00509 397 NPGKEIDYNGKELKLPDIKMVYWAGGNPFHHHQDTNRLIKAWRKLETIIVHEPQWTPTAKHADIVLPATTSFERNDLTMA 476 (770)
T ss_pred CCCCeeccCCccccCCCeEEEEECCCChhHhCCCHHHHHHHHhcCCEEEEecCcCCchHhhCCEEeCCCchhhccccccc
Confidence 00 0012579999999999952 4689999999999999999999999999999999998541
Q ss_pred Ec-CCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 004627 627 EN-TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 666 (741)
Q Consensus 627 ~n-~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y 666 (741)
.+ ...+++..+|+|+|+||+|+||||+++||++||.+..|
T Consensus 477 ~~~~~~~~~~~~~~v~P~ge~r~d~~I~~~LA~rlg~~~~~ 517 (770)
T TIGR00509 477 GDYSNTGILAMKQVVPPQFEARNDYDIFAALAERLGVEEAF 517 (770)
T ss_pred ccccCCeeEEeecccCCCccccCHHHHHHHHHHHhCccccc
Confidence 11 23579999999999999999999999999999987554
No 49
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=100.00 E-value=8.5e-49 Score=463.29 Aligned_cols=361 Identities=16% Similarity=0.222 Sum_probs=296.5
Q ss_pred cccccccccccCC-CCCCCCcEEeC-CCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCC
Q 004627 324 ISDKTRFCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGS 401 (741)
Q Consensus 324 iC~KGr~~~~~l~-~~RL~~PliR~-g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs 401 (741)
+...-.+++.++. ++||++||+|. |+|+|++|||||||++||++|+++.+++++++.|+..++|+.+++++|++.+|+
T Consensus 83 ~~~l~~~~~~~l~~~~RL~~Pm~R~~g~g~~~~ISWdEAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt 162 (743)
T TIGR01701 83 VSELRTLDSHELEKLGRLTYPLSLRPGSDHYTPISWDDAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGS 162 (743)
T ss_pred HHHHhcCCHHHhccCCCCCCCEEecCCCCCEEEccHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCC
Confidence 4445567778886 89999999997 468999999999999999999998889999999998999999999999999999
Q ss_pred CcccCCCCcchh------hhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCC-
Q 004627 402 NNVWCEGTGAQS------NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL- 474 (741)
Q Consensus 402 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~- 474 (741)
+|++...+.|.. ...+|... .+.++.|+++||+||+||.||..++|.+..+|++++ ++|+|||+|||+.+.
T Consensus 163 ~n~~~~s~~C~~~~~~al~~~~G~~~-~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~-~rGakiIvIdP~~~~~ 240 (743)
T TIGR01701 163 NNLPDCSNMCHEPSSVALKRSIGIGK-GSVNLEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAK-KRGAKIIAINPLRERG 240 (743)
T ss_pred CCcCCCcccccchhhHHHHHhcCCCC-CCCCHhHHHhCCEEEEEecCcccccHHHHHHHHHHH-HCCCEEEEECCCCccc
Confidence 999877776622 23334321 235789999999999999999999999999999986 599999999998754
Q ss_pred --------------C---ccccc------cCCCHHHH-------------------------------------------
Q 004627 475 --------------N---YDHQH------LGTGPKTL------------------------------------------- 488 (741)
Q Consensus 475 --------------t---~~~~~------lG~d~~~l------------------------------------------- 488 (741)
| +..++ +|+|.+.+
T Consensus 241 l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD~AL~~g~~~~li~~~~~~~~~~~D~~Fi~~~t~Gfe~l~~~v~~~t~ 320 (743)
T TIGR01701 241 LERFWIPQIPESMLTGGGTQISSEYYQVRIGGDIALFNGVMKLLIEAEDAQPGSLIDHEFIANHTNGFDELRRHVLQLNW 320 (743)
T ss_pred ccccccccccchhccccchHhhCeeecCCCCcHHHHHHHHHHHHHHCCCccccccccHHHHHHhcchHHHHHHHHHhCCH
Confidence 1 22222 25543221
Q ss_pred ---HHHH----cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhc
Q 004627 489 ---LEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDL 561 (741)
Q Consensus 489 ---~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~ 561 (741)
++++ +.|+++|+.|+++++++|++|+|+.+|.+|.++.+++.+|++++|++|++|+|+.++.++.|.+|...+
T Consensus 321 e~~~~~tGv~~~~I~~~A~~~a~a~~~~i~~g~G~~q~~~g~~~~~ai~~L~~L~GniG~~G~G~~~~~g~~n~qG~~~~ 400 (743)
T TIGR01701 321 NDIERSSGLSQEEILEFAKLLANSRRVVFCWAMGLTQHAHGVDNISQVANLALLRGNIGKPGAGVCPIRGHSNVQGDRTM 400 (743)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCEEEEECccccccchHHHHHHHHHHHHHHhCCCCCCCCCcCCCCCCCCCCCCccc
Confidence 1111 128899999999999999999999999999999999999999999999999999888888887776666
Q ss_pred CCCCC----------------------CC-------CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCC
Q 004627 562 GLVPE----------------------SS-------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGD 604 (741)
Q Consensus 562 g~~p~----------------------~~-------~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~ 604 (741)
|..+. .+ ...+++|++|++|+||+. .++|++++|+|++|.++|
T Consensus 401 g~~~~~~~~~~~~l~~~~g~~~p~~~g~~~~~~~~a~~~g~ikal~~~ggNp~~~~Pd~~~~~~AL~kld~~V~~d~~lt 480 (743)
T TIGR01701 401 GITEKPEEEFLARLSQIYGFTPPDWPGDTTVAMIEAILTGKVRAFICLGGNFLEAMPDTAAIERALRQLDLRVHVATKLN 480 (743)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhcCCceEEEEeCCChHhcCCCHHHHHHHHHcCCeEEEEeCCcC
Confidence 54211 10 036789999999999952 568999999999999999
Q ss_pred ccc---cccceeccCCCCCCCCceE--------EcCCCeeEeeccccCCCC-CCccHHHHHHHHHHHhCCC--CCC----
Q 004627 605 HGV---YRANVILPASAFSEKEGTY--------ENTEGCTQQTLPAVPTVG-DARDDWKIIRALSEVAGMR--LPY---- 666 (741)
Q Consensus 605 eta---~~ADvVLP~a~~~Ek~gt~--------~n~eg~vq~~~~av~P~g-ear~d~~Il~~La~~lg~~--~~y---- 666 (741)
+|+ .+||||||+++++|++|++ .+.+++++..+++++|++ |+|+||+|+++||++||.+ ++|
T Consensus 481 ~Ta~~a~~advVLP~~~~~E~~~~~~~~q~vt~~~s~~~v~~~~~~v~P~~~e~rsd~~I~~~LA~~lg~~~~~~w~~~~ 560 (743)
T TIGR01701 481 RSHVLAKEEALILPVLGRYEQDGQGTGKQAVSVESSMRMVHFSRGILKPRGAELRSEWAIIAEIAKALLPETPVAWEILV 560 (743)
T ss_pred cchhhhcCCeEEECCCCcccccCccCcccceeEEcCCceEEeecCcCCCCCcccCCHHHHHHHHHHHHCCCCCCCccccc
Confidence 997 5669999999999999863 466788999999999998 9999999999999999975 333
Q ss_pred CCHHHHHHHHHHhCCCCCCc
Q 004627 667 DTIGGIRSRIRTVAPNLLHV 686 (741)
Q Consensus 667 ~~~~~v~~~~~~~~p~~~~~ 686 (741)
.+.+++++++....|.+..+
T Consensus 561 ~~~~~ir~~i~~~~p~~~~~ 580 (743)
T TIGR01701 561 DTYDQIRDAIAATNPGYDDI 580 (743)
T ss_pred cCHHHHHHHHHHhCcCccch
Confidence 37788999998888865433
No 50
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=100.00 E-value=6.4e-49 Score=472.45 Aligned_cols=395 Identities=17% Similarity=0.154 Sum_probs=270.3
Q ss_pred ecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeC--------------CCCCe
Q 004627 288 TIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG--------------ADGRF 352 (741)
Q Consensus 288 siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~--------------g~g~~ 352 (741)
++|.+| |++.++|+||+|++|+|+++++.+.+ |.|| ..+.+| |+||++||+|+ |+|+|
T Consensus 42 ~~~~~~---~~l~~~V~dG~v~~v~gd~~~~~~~~--~~~g--~~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~f 114 (822)
T TIGR02164 42 TTGSHW---GAFRAKVKNGKVVEVKPFELDKYPTE--MING--IRGMVYNPSRVRYPMVRLDWLKKRHKSNTHQRGDNRF 114 (822)
T ss_pred ccCCCc---CceEEEEECCEEEEEecCCCCCccch--hhhc--chhhccCchhccCCceecchhhccCCCCcccCCCCCE
Confidence 466666 46999999999999999987666554 7776 356777 99999999995 47899
Q ss_pred eecCHHHHHHHHHHHHHhcC----CCcEEE-EECCCCCHHHHHHHHHHHHHcCCC-c-ccCCCCcchh------hhhhhc
Q 004627 353 KAVNWRDALAVVAEVMLQAK----PEEIVG-IAGRLSDAESMMALKDFLNRMGSN-N-VWCEGTGAQS------NADLRS 419 (741)
Q Consensus 353 ~~iSWdeAl~~iA~~Lk~i~----~~~i~~-~~g~~~~~e~~~~~~~l~~~lGs~-~-~~~~~~~~~~------~~~~~~ 419 (741)
++|||||||++||++|++++ +++|++ ..+...+........+|++.+|+. + +......|.. ...+|.
T Consensus 115 ~rISWDEAld~IA~kl~~i~~~yG~~si~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 194 (822)
T TIGR02164 115 VRVTWDEALDLFYEELERVQKQYGPSALHAGQTGWRSTGQFHSCTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGS 194 (822)
T ss_pred EEecHHHHHHHHHHHHHHHHHhhCcceeEecccccccCCCCCchHHHHHHHhcccCCCcCCCCCccHHHHhhhcCceecc
Confidence 99999999999999999976 577765 322111111112234567777652 2 3222222211 122232
Q ss_pred Cccc--CCCcc-ccccCCEEEEEcCChhhhh---------hHHHHHH---HHHHHhCCCEEEEEccCCCCCccc-cc---
Q 004627 420 GYIM--NTSIS-GLEKADCFLLVGTQPRVEA---------AMVNARI---RKTVRANNAKVGYIGPATDLNYDH-QH--- 480 (741)
Q Consensus 420 ~~~~--~~~~~-di~~ad~Ill~G~Np~~~~---------p~~~~rl---r~a~~~~gakiivIdp~~~~t~~~-~~--- 480 (741)
...+ +.+.. ++++||+||+||+||.+++ |. ..++ +++.+++|+||||||||+|.|+.. ++
T Consensus 195 ~~~~g~~~~~~~~~~~a~~il~wG~Np~~s~~~~~~~~~~~~-~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l 273 (822)
T TIGR02164 195 TEVYAQGTSWPLILENSDTIVLWANDPVKNLQVGWNCETHES-FAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHL 273 (822)
T ss_pred hhhccCCCChHHHHHhCCEEEEECCCHHHhcCcccccCCCch-HHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEe
Confidence 1111 22333 4699999999999998764 43 2333 343332359999999999999874 22
Q ss_pred ---cCCCHH----------------------------------------------HHHHHH----cCHHHHHHHHhcCCC
Q 004627 481 ---LGTGPK----------------------------------------------TLLEIA----EGRHPFFSAISNAKN 507 (741)
Q Consensus 481 ---lG~d~~----------------------------------------------~l~~i~----~gi~~lA~~l~~a~~ 507 (741)
+|+|.+ ++++++ +.|+++|++|++ ++
T Consensus 274 ~irPGTD~AL~lam~~vii~e~l~D~~Fi~~~t~Gfe~~~~~l~~~~~g~~~tpe~aa~itGV~ae~I~~lA~~~a~-~~ 352 (822)
T TIGR02164 274 YVNPQTDVALMLALAHTLYSENLYDKKFIEGYCLGFEEFLPYVLGSKDGVAKTPEWAAKICGVEAEVIRDLARMLVK-GR 352 (822)
T ss_pred ccCCCcHHHHHHHHHHHHHHCCCccHHHHHHhcccHHHHHHHhccccCCCcCCHHHHHHHHCcCHHHHHHHHHHHHh-cC
Confidence 255532 222332 228899999998 45
Q ss_pred cEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecC-----chhhh----hhhhh----------------cC
Q 004627 508 PVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLL-----LNAAQ----AAALD----------------LG 562 (741)
Q Consensus 508 ~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~-----~~~~~----~g~~~----------------~g 562 (741)
+.+++|++..++.||.+..+++..|+++||++|++|+|+.... +..+. .+.+. .|
T Consensus 353 ~~~~~g~g~~~~~~g~~~~rai~~L~altGnig~pGgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (822)
T TIGR02164 353 TQLIFGWCIQRQQHGEQPYWMGAVLAAMIGQIGLPGGGISYGHHYSSIGVPSSGAAAPGAFPRNLDEGQKPKFDNSDFKG 432 (822)
T ss_pred CEEEEeccchhhhcchHHHHHHHHHHHHhCcCCCCCCcccccccccCCCCcccccccCcCccccCCcccccccccccccC
Confidence 6777899999999999999999999999999999998764210 00000 00000 00
Q ss_pred C---CCCC---CC--C-------------ccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCcccccccee
Q 004627 563 L---VPES---SN--S-------------IESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVI 613 (741)
Q Consensus 563 ~---~p~~---~~--~-------------~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvV 613 (741)
. .|.. +. . .++||++|++++||+. .++|++++|+|++|+|+|+|++|||||
T Consensus 433 ~~~~~p~~~~~~~i~~~g~~~~~~~~~~~~~~ik~l~v~g~Np~~~~p~~~~~~~al~kldf~V~~D~~~teTa~~ADiV 512 (822)
T TIGR02164 433 YSSTIPVARWIDAILEPGKTIDHNGSKVTYPPIKMMIFSGCNPWHHHQDRNRMKQAFQKLETVVTIDVSWTATCRFSDIV 512 (822)
T ss_pred ccccccHhHHHHHhcCCCceeccCCcccCCCCeEEEEEcCCCHHhcCcCHHHHHHHHhcCCEEEEecCcCChhhhhCCEE
Confidence 0 0100 00 0 1359999999999953 467999999999999999999999999
Q ss_pred ccCCCCCCCCceE--Ec-CCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCCC---C----HHHHHHHHHHhCCC-
Q 004627 614 LPASAFSEKEGTY--EN-TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYD---T----IGGIRSRIRTVAPN- 682 (741)
Q Consensus 614 LP~a~~~Ek~gt~--~n-~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y~---~----~~~v~~~~~~~~p~- 682 (741)
||+++|+|+++.. .+ ...+++.++|+|+|+||+|+||||+++||++||.+..|. + .+++++++....+.
T Consensus 513 LPaat~~E~~d~~~~g~~~~~~~~~~~~~i~P~geak~d~eI~~~LA~rlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (822)
T TIGR02164 513 LPACTQFERNDIDVYGSYSNRGIIAMQKLVDPLFDSRSDFEIFTELCRRFGKEKEYTRNMDEMEWLKTLYNECKQANAGK 592 (822)
T ss_pred ecCCcccccccccccccccCcccceeccccCCcccccCHHHHHHHHHHHhCChhhcccCcCHHHHHHHHHHHHHHhccCC
Confidence 9999999999642 11 235799999999999999999999999999999875442 1 45555554443322
Q ss_pred --CCCccccCC
Q 004627 683 --LLHVDEREP 691 (741)
Q Consensus 683 --~~~~~~l~~ 691 (741)
..+|+++.+
T Consensus 593 ~~~~~~~~l~~ 603 (822)
T TIGR02164 593 FEMPDFAEFWK 603 (822)
T ss_pred CCCCCHHHHHh
Confidence 125555543
No 51
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=5.7e-48 Score=432.15 Aligned_cols=349 Identities=17% Similarity=0.167 Sum_probs=263.0
Q ss_pred ecCCCCCCCCC-ceEeeeCCEEEEEcCCCCCCCCccccccccccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHH
Q 004627 288 TIDVTDAVGSN-IRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAE 366 (741)
Q Consensus 288 siC~~C~~gC~-i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~ 366 (741)
.+|++|+.||+ +.++++||+|+|+. .+|+||++.++.++ +||++||+|+ ++||||||++++++
T Consensus 2 ~~C~~C~~gC~~l~~~~~~g~v~~~~----------~lC~kg~~~~~~~~-dRl~~Pl~r~-----~~isWdeAl~~ia~ 65 (415)
T cd02761 2 VVCPFCGLLCDDIEVEVEDNKITKVR----------NACRIGAAKFARYE-RRITTPRIDG-----KPVSLEEAIEKAAE 65 (415)
T ss_pred cccCCCCccccceEEEEECCEEEEcC----------CCCcchHHHHhhcc-cccCCCeecC-----CCCCcHHHHHHHHH
Confidence 58999999996 99999999999963 49999999999999 9999999985 89999999999999
Q ss_pred HHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhh--hhhcCcccCCCccccc-cCCEEEEEcCCh
Q 004627 367 VMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNA--DLRSGYIMNTSISGLE-KADCFLLVGTQP 443 (741)
Q Consensus 367 ~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~--~~~~~~~~~~~~~di~-~ad~Ill~G~Np 443 (741)
+|++++. ..++.++....+..+++++|++.+|+ ++++..+.|.... .+...+..+.++.|++ +||+||+||+||
T Consensus 66 ~L~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n~ 142 (415)
T cd02761 66 ILKEAKR--PLFYGLGTTVCEAQRAGIELAEKLGA-IIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADVIVYWGTNP 142 (415)
T ss_pred HHHhhcC--CEEEEcccchHHHHHHHHHHHHHHCC-CccccccccccchHHHHHhCCCccccHHHHHhcCCEEEEEcCCc
Confidence 9999853 23455555555777888999999997 5555444442111 1111223446788996 899999999999
Q ss_pred hhhhhHHHHHH---HHHH----HhCCCEEEEEccCCCCCccccc------cCCCHHHHHHHH------------------
Q 004627 444 RVEAAMVNARI---RKTV----RANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA------------------ 492 (741)
Q Consensus 444 ~~~~p~~~~rl---r~a~----~~~gakiivIdp~~~~t~~~~~------lG~d~~~l~~i~------------------ 492 (741)
.+++|++..++ .++. .++|+||++|||+.+.|+..++ +|+|...+..+.
T Consensus 143 ~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i~pgtd~~l~~~l~~~l~~~~~~~~~~~gv~~ 222 (415)
T cd02761 143 MHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQIDPGSDYELLAALRALLRGAGLVPDEVAGIPA 222 (415)
T ss_pred cccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEecCCCCcHHHHHHHHHHHhccccccccccCcCH
Confidence 99999877331 1111 1478999999999999987755 488887654432
Q ss_pred cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhc-----CC----
Q 004627 493 EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDL-----GL---- 563 (741)
Q Consensus 493 ~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~-----g~---- 563 (741)
+.|+++|+.|+++++++|++|.|+.++.++.....++..+...++...+ .++..+.+..|..|...+ |+
T Consensus 223 ~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~~~~~--~~~~~l~g~~n~~G~~~~~~~~~g~~~~~ 300 (415)
T cd02761 223 ETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALNEYTK--FALLPLRGHYNVRGFNQVLTWLTGYPFRV 300 (415)
T ss_pred HHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhCcccc--eeeeeccCcCCccCcccccccccCCCcce
Confidence 1278999999999999999999998776655544444444454444321 233444444333332211 11
Q ss_pred ---------CCCCCC-----CccCceEEEEeccCccC------ccCCCCCCeEEEEcccCCccccccceeccCCC-CCCC
Q 004627 564 ---------VPESSN-----SIESAKFVYLMGADDVD------LEKLPNDAFVVYQGHHGDHGVYRANVILPASA-FSEK 622 (741)
Q Consensus 564 ---------~p~~~~-----~~~~ik~l~l~g~np~~------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~-~~Ek 622 (741)
.|.... ..+++|++|++|+||+. .++|++++ +|++|+|+|||+++||||||+++ |+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~i~~g~ik~l~~~g~np~~~~p~~~~~al~~~~-~Vv~d~~~teta~~ADvvLP~a~~~~E~ 379 (415)
T cd02761 301 DFSRGYPRYNPGEFTAVDLLAEGEADALLIIASDPPAHFPQSAVKHLAEIP-VIVIDPPPTPTTRVADVVIPVAIPGIEA 379 (415)
T ss_pred ecccCCCCCCCchhhHHHHHhcCCCCEEEEEcCCCcccCCHHHHHhhccCC-EEEECCCCCcccccCcEEEeCCcccccc
Confidence 011000 36789999999999953 35687776 79999999999999999999998 7999
Q ss_pred CceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHh
Q 004627 623 EGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 660 (741)
Q Consensus 623 ~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~l 660 (741)
+|||+|.||++|.++|+++|. .++||+||..|++++
T Consensus 380 ~Gt~~n~eg~~q~~~~~~~~~--~~~~~~il~~l~~~~ 415 (415)
T cd02761 380 GGTAYRMDGVVVLPLKAVETE--RLPDEEILKQLLEKV 415 (415)
T ss_pred CceEEEeCCceEeeeccCCCC--CCCHHHHHHHHHhhC
Confidence 999999999999999999884 599999999999874
No 52
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=9e-48 Score=440.95 Aligned_cols=331 Identities=16% Similarity=0.205 Sum_probs=274.9
Q ss_pred cccccCC-CCCCCCcEEeC-CCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCC
Q 004627 330 FCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCE 407 (741)
Q Consensus 330 ~~~~~l~-~~RL~~PliR~-g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~ 407 (741)
+++..++ ++||++||+|. |+|+|++|||||||++||++|+++.+++++++.++..++|+.+++++|++.+|++|++..
T Consensus 54 ~~~~~l~~~~RL~~Pm~R~~G~g~~~~ISWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~ 133 (574)
T cd02767 54 WSDYELEHLGRLTYPMRYDAGSDHYRPISWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDC 133 (574)
T ss_pred CChhhccCCCccCCCEEecCCCCCEEEecHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCC
Confidence 4455575 89999999997 478999999999999999999999889999999988889999999999999999999887
Q ss_pred CCcchhh------hhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCC-------
Q 004627 408 GTGAQSN------ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL------- 474 (741)
Q Consensus 408 ~~~~~~~------~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~------- 474 (741)
.+.|... ..+|.. ..+.+++|+++||+||+||+||..++|.+..+|++++ ++|+|||+|||+.+.
T Consensus 134 s~~C~~~~~~al~~~~G~~-~~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~-~rGakIIvIdP~~~~gl~~f~~ 211 (574)
T cd02767 134 SNMCHEPSSVGLKKSIGVG-KGTVSLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAK-KRGGKIIVINPLREPGLERFAN 211 (574)
T ss_pred CCCcchHHHhHHHHhcCCC-CCCCCHHHHhcCCEEEEEcCChhhhcHHHHHHHHHHH-HCCCEEEEECCCcccccccccc
Confidence 7776322 233332 2235789999999999999999999999999999986 599999999998752
Q ss_pred ----------Cccccc------cCCCHHHH---------------------------------------------HHHH-
Q 004627 475 ----------NYDHQH------LGTGPKTL---------------------------------------------LEIA- 492 (741)
Q Consensus 475 ----------t~~~~~------lG~d~~~l---------------------------------------------~~i~- 492 (741)
++..++ +|+|...+ ++++
T Consensus 212 p~~~~~~lt~~a~~Ad~~l~irPGtD~AL~~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~e~~~~~tG 291 (574)
T cd02767 212 PQNPESMLTGGTKIADEYFQVRIGGDIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASG 291 (574)
T ss_pred ccccccccccchhhhCeeeCCCCCcHHHHHHHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCHHHHHhHhC
Confidence 233322 25554321 1111
Q ss_pred ---cCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCC----
Q 004627 493 ---EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVP---- 565 (741)
Q Consensus 493 ---~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p---- 565 (741)
+.|+++|+.|+++++++|++|+|+.+|.+|.++.+++.+|+.++|++|++|+|+.++.++.|.+|...+|..+
T Consensus 292 v~~e~I~~~A~~~a~a~~~ii~~g~Gi~q~~~g~~~v~ai~~L~~LtGniGr~G~G~~~~~g~snvqG~~~~g~~~~~~~ 371 (574)
T cd02767 292 LSREEIEAFAAMYAKSERVVFVWGMGITQHAHGVDNVRAIVNLALLRGNIGRPGAGLMPIRGHSNVQGDRTMGITEKPFP 371 (574)
T ss_pred cCHHHHHHHHHHHHhCCCEEEEecchhcccchHHHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCCCCCcccCCCCCCCH
Confidence 1278999999999999999999999999999999999999999999999999998888888887776666422
Q ss_pred ---------------CCC----------CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCcccc---c
Q 004627 566 ---------------ESS----------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVY---R 609 (741)
Q Consensus 566 ---------------~~~----------~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~---~ 609 (741)
... ...+++|++|++|+||+. .++|++++|+|++|.++|+|+. +
T Consensus 372 ~~~~~l~~~~g~~~P~~~g~~~~~~~~a~~~g~ik~l~~~ggNp~~~~pd~~~~~~AL~kld~~V~~d~~~~~t~~~~~~ 451 (574)
T cd02767 372 EFLDALEEVFGFTPPRDPGLDTVEAIEAALEGKVKAFISLGGNFAEAMPDPAATEEALRRLDLTVHVATKLNRSHLVHGE 451 (574)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCceEEEEecCCHHhcCcCHHHHHHHHhcCCeEEEEecccchhhcccCC
Confidence 111 036789999999999952 4689999999999999999994 7
Q ss_pred cceeccCCCC--------------CCCCceEEcC-------CCeeEeecccc------CCCCCCccHHHHHHHHHHHhCC
Q 004627 610 ANVILPASAF--------------SEKEGTYENT-------EGCTQQTLPAV------PTVGDARDDWKIIRALSEVAGM 662 (741)
Q Consensus 610 ADvVLP~a~~--------------~Ek~gt~~n~-------eg~vq~~~~av------~P~gear~d~~Il~~La~~lg~ 662 (741)
||||||++++ +|++|++++. ..+++..+++| +|+||+|+||+|+.+|+++|+.
T Consensus 452 adiILP~~~~~e~d~~~~~~~~~~~E~~~~~v~~s~g~~~~~~~~~~se~ai~~~~~~~~~ge~r~dw~i~~~la~~i~~ 531 (574)
T cd02767 452 EALILPCLGRTEIDMQAGGAQAVTVEDSMSMTHTSRGRLKPASRVLLSEEAIVAGIAGARLGEAKPEWEILVEDYDRIRD 531 (574)
T ss_pred CeEEeCCCccccccccccccccceEecCCceEecCCCccCCCCccceehhhhcccccccCCCCCcccHHHHHHHHHHHHH
Confidence 9999999999 9999987753 35688999999 9999999999999999998764
No 53
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=100.00 E-value=5.4e-47 Score=446.95 Aligned_cols=376 Identities=14% Similarity=0.120 Sum_probs=289.7
Q ss_pred eeeeecC-CCCCCCCCceEeeeCCEEEEEcCC-------CCCCCCccccccccccccccCC-CCCCCCcEEeC-------
Q 004627 284 KGTETID-VTDAVGSNIRIDSRGPEVMRILPR-------LNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG------- 347 (741)
Q Consensus 284 ~~~~siC-~~C~~gC~i~v~vrdg~V~rI~p~-------~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~------- 347 (741)
+.+.|+| ++|..+|++.|+|+||+|++++++ +++|.+++++|.||++..+.+| |+||++||+|+
T Consensus 43 kvv~stc~~nC~~~Cs~~v~VkDG~V~~~~~~~dyP~~~~d~P~~~~R~C~KG~s~~~~vYsPdRLkyPmkR~~~l~~~~ 122 (1235)
T TIGR01580 43 KIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYIYSANRLKYPMMRKRLMKLWR 122 (1235)
T ss_pred eEEEeecCCCCCCCCceEEEEECCEEEEEEccCCCCCCCCCCCcCCCccChhhhhhHhhhCCcccccCCeeccchhhhhh
Confidence 4667777 679999999999999999999977 3457789999999999999998 99999999995
Q ss_pred ------------------------------CCCCeeecCHHHHHHHHHHHHHhcC----CCcEEEEECC-CCCHHHHHHH
Q 004627 348 ------------------------------ADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAGR-LSDAESMMAL 392 (741)
Q Consensus 348 ------------------------------g~g~~~~iSWdeAl~~iA~~Lk~i~----~~~i~~~~g~-~~~~e~~~~~ 392 (741)
|+|+|++||||||+++||++|++++ +++|+++.+. ..+.....+.
T Consensus 123 ~a~~~~~dpv~aw~~i~~~~~k~~~y~g~RG~G~fvRISWDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~ 202 (1235)
T TIGR01580 123 EAKQTHSDPVEAWASIVENADKAKSYKQARGRGGFVRSSWQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASG 202 (1235)
T ss_pred hhhhccCChhhhhhhhcccccccccccccCCCCCEEEecHHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHH
Confidence 3578999999999999999998765 6899877653 2233333445
Q ss_pred HHHHHHcCCCcccCCCCcchhh----hhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEE
Q 004627 393 KDFLNRMGSNNVWCEGTGAQSN----ADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYI 468 (741)
Q Consensus 393 ~~l~~~lGs~~~~~~~~~~~~~----~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivI 468 (741)
.+|++.+|+.++++....|... ..+|.. .......|+.||++||+||+|+..+.....+++.+++ ++|+|||+|
T Consensus 203 ~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~~-t~~~e~~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr-~rGaKvVVV 280 (1235)
T TIGR01580 203 SRYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ-TDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVR-YKGTKTVAI 280 (1235)
T ss_pred HHHHHhcCCccccCCCCcchhhHHhHhheecC-CCCCCchhhhcCCEEEEECCChhhhcchhHHHHHHHH-HcCCeEEEE
Confidence 7899999999887766666332 233321 1123457899999999999999888655678888875 499999999
Q ss_pred ccCCCCCccccc-------------------------------------------------------------------c
Q 004627 469 GPATDLNYDHQH-------------------------------------------------------------------L 481 (741)
Q Consensus 469 dp~~~~t~~~~~-------------------------------------------------------------------l 481 (741)
||+++.++..++ +
T Consensus 281 DPr~t~tA~~AD~WLpIrPGTD~ALaLAm~hvII~E~l~D~~~~~f~~yvk~yTdaPfLV~ld~~~g~~~~grfLrasDl 360 (1235)
T TIGR01580 281 TPDYAEIAKLCDLWLAPKQGTDAALALAMGHVILREFHLDNPSQYFTEYAKRYTDMPMLVMLEERDGYYAAGRFLRAADL 360 (1235)
T ss_pred cCCCChhhHhhCEEeCCCCChHHHHHHHHHHHHHHCCCcccccHHHHHHHHHhcCCceEEEeccCCCcccCCccccHHHc
Confidence 999987632110 0
Q ss_pred CC-------C----------------------------------------------------------------------
Q 004627 482 GT-------G---------------------------------------------------------------------- 484 (741)
Q Consensus 482 G~-------d---------------------------------------------------------------------- 484 (741)
+. +
T Consensus 361 ~~~~~~~~~~~~k~~v~D~~~~~~~p~Gs~g~rw~~~g~Wnl~~~~~~~g~~i~p~ls~~~~~d~~~~v~~P~f~g~~~~ 440 (1235)
T TIGR01580 361 VDALGQENNPEWKTVAFDTNGEMVAPQGSIGFRWGEKGKWNLEQRDGKTGEEIELQLSLLGSQDEIAEVGFPYFGGDGTE 440 (1235)
T ss_pred ccccCccCCCcceEEEEeCCCCCcCCCCCcccccCcCCccccccccCcCCCccCccccccccCCcceeecccccCCcccc
Confidence 00 0
Q ss_pred ---------------------------------------------------------------HHHHHHHH----cCHHH
Q 004627 485 ---------------------------------------------------------------PKTLLEIA----EGRHP 497 (741)
Q Consensus 485 ---------------------------------------------------------------~~~l~~i~----~gi~~ 497 (741)
|++.++++ +.|++
T Consensus 441 ~~~~~~g~~~~~r~vp~~~v~l~dG~~v~V~TVfdll~a~~gv~r~l~g~~~~~~y~d~~~YTPe~aeeiTGV~ae~I~~ 520 (1235)
T TIGR01580 441 HFNKVEGENVLLRKLPVKRLQLADGSTALVTTVFDLTLANYGLERGLGDVNCATSYDDVKAYTPAWQEQITGVSREQIIR 520 (1235)
T ss_pred cccccCCCceeecccceEEEEcCCCCEEEEEeHHHHHHHHhCcCcCCCCccccccccccCCCCHHHHHHHHCcCHHHHHH
Confidence 00001111 11789
Q ss_pred HHHHHhc-----CCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhh---h------------
Q 004627 498 FFSAISN-----AKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQA---A------------ 557 (741)
Q Consensus 498 lA~~l~~-----a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~---g------------ 557 (741)
+|++|+. .++++|++|.|+.++.||..+.+++.+|+.+||++|++|+|.+.+.++.+.. |
T Consensus 521 lAreyA~na~~t~g~s~I~~G~Ginh~~hgd~~~Rai~~L~~LTGniG~~GgG~~~y~GQ~klrp~~gw~~lafa~dw~r 600 (1235)
T TIGR01580 521 IAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLILCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQR 600 (1235)
T ss_pred HHHHHHhcccccCCceEEEeCcccchhhhchHHHHHHHHHHHHhccCCCCCCCCccccCccCcccCCccccccccccccc
Confidence 9999998 5889999999999999999999999999999999999999887654321110 0
Q ss_pred ------------------------------------------------hhhcCCCCCC---C------------------
Q 004627 558 ------------------------------------------------ALDLGLVPES---S------------------ 568 (741)
Q Consensus 558 ------------------------------------------------~~~~g~~p~~---~------------------ 568 (741)
+..+|+.|.. +
T Consensus 601 ppR~~~~ts~~Y~htdQwRye~~~~~~~~sp~~~~~~~~~~~~D~~~~a~r~GWlP~~Pqf~~n~l~l~~eA~~ag~~~~ 680 (1235)
T TIGR01580 601 PPRHMNGTSFFYNHSSQWRYETVTAEDLLSPMADKSRYTGHLIDYNVRAERMGWLPSAPQLNTNPLTIAGEAEKAGMNPV 680 (1235)
T ss_pred CcccccccchhhhcCCceeecCcchhhhcCCCccccccccChhHHHHHHHhcCCCCCCcccCCCHHHHHHHHHHcCCChH
Confidence 0112333322 0
Q ss_pred --------------C-Cc-----cCceEEEEeccCccCc----------------------------------------c
Q 004627 569 --------------N-SI-----ESAKFVYLMGADDVDL----------------------------------------E 588 (741)
Q Consensus 569 --------------~-~~-----~~ik~l~l~g~np~~~----------------------------------------~ 588 (741)
+ ++ .-++.++++.+|++.. .
T Consensus 681 ~~v~~~l~~g~l~fa~edpd~p~n~Pr~~fvWR~NllgsS~KG~eyflkhllgt~~~~~~~~~~~~~~~~p~ev~w~~~a 760 (1235)
T TIGR01580 681 DYVVKSLQEGSLRFAAEQPDNGVNFPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIMNKDLGQQGGVKPEEVDWQDNG 760 (1235)
T ss_pred HHHHHHHhcCcccccccCCCCCcCCceEEEEEccccccCCccchHHHHHhhccCCcccccccccccccCCceeEEeeccc
Confidence 0 01 1278899999998520 1
Q ss_pred CCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEEcC-CCeeEeeccccCCCCCCccHHHHHHHHHHHhC
Q 004627 589 KLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENT-EGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 661 (741)
Q Consensus 589 al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~n~-eg~vq~~~~av~P~gear~d~~Il~~La~~lg 661 (741)
.+.|++|+|++|+++++|+.|||||||+++|+||.|+++|. ++++|.++++|+|+||+|+||+|++.||++|+
T Consensus 761 ~~~kldl~v~~D~~mt~ta~~advvLPaAt~~Ek~d~~t~~~h~~i~~~~~av~P~geak~Dw~I~~~LA~~~s 834 (1235)
T TIGR01580 761 LEGKLDLVVTLDFRMSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAIDPAWESKSDWEIYKAIAKAFS 834 (1235)
T ss_pred cccCccEEEEeeeeeccchhhCcEEEecCccccccCccccCCCCceeecccccCCcccccCHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999985 88899999999999999999999999999984
No 54
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=460.31 Aligned_cols=365 Identities=18% Similarity=0.180 Sum_probs=251.8
Q ss_pred CCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC-CCCCCCcEEeC--------------CCCCeeecCHHHHH
Q 004627 297 SNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG--------------ADGRFKAVNWRDAL 361 (741)
Q Consensus 297 C~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~--------------g~g~~~~iSWdeAl 361 (741)
|++.++|+||+|++|+|+++++... .|.|| ..+.+| |+||++||+|+ |+|+|++|||||||
T Consensus 51 ~~l~~~V~dG~vv~v~g~~~~~~~~--~~~~~--~~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~f~~ISWDEAl 126 (825)
T PRK15102 51 GAFRAKVKNGRFVEAKPFELDKYPT--KMING--IKGHVYNPSRIRYPMVRLDWLRKRHKSDTSQRGDNRFVRVSWDEAL 126 (825)
T ss_pred CceEEEEECCEEEEEecCCCCcCcc--hHHhc--hhhhccChhhccCCceechhhhccCCCCcccCCCCcEEEecHHHHH
Confidence 4799999999999999986543221 25444 455677 99999999996 37899999999999
Q ss_pred HHHHHHHHhcC----CCcEEEE-ECCCCCHHHHHHHHHHHHHcCC--CcccCCCCcch------hhhhhhcCccc--CCC
Q 004627 362 AVVAEVMLQAK----PEEIVGI-AGRLSDAESMMALKDFLNRMGS--NNVWCEGTGAQ------SNADLRSGYIM--NTS 426 (741)
Q Consensus 362 ~~iA~~Lk~i~----~~~i~~~-~g~~~~~e~~~~~~~l~~~lGs--~~~~~~~~~~~------~~~~~~~~~~~--~~~ 426 (741)
++||++|++++ +++|... .+...+........+|++.+|+ ..+......|. ....+|....+ +.+
T Consensus 127 d~IA~kl~~i~~~~G~~ai~~g~~~~~~~g~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~ 206 (825)
T PRK15102 127 DLFYEELERVQKTYGPSALHTGQTGWQSTGQFHSATGHMQRAIGMHGNSVGTVGDYSTGAGQVILPYVLGSTEVYEQGTS 206 (825)
T ss_pred HHHHHHHHHHHHhhCcHhhcccccccccCCccCchHHHHHHHHhhcCCCcCCCCCcCHHHHhhhhheEecchhhccCCCC
Confidence 99999999976 4666321 1111110001122345666664 22222222221 11223322111 123
Q ss_pred c-cccccCCEEEEEcCChhhhh---------hHH--HHHHHHHHHhCCCEEEEEccCCCCCccc--c-c----cCCCHH-
Q 004627 427 I-SGLEKADCFLLVGTQPRVEA---------AMV--NARIRKTVRANNAKVGYIGPATDLNYDH--Q-H----LGTGPK- 486 (741)
Q Consensus 427 ~-~di~~ad~Ill~G~Np~~~~---------p~~--~~rlr~a~~~~gakiivIdp~~~~t~~~--~-~----lG~d~~- 486 (741)
. .|++|||+||+||+||.+++ |.. ..+++++.+++|+||||||||+|.|+.. + + +|+|..
T Consensus 207 ~~~~~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL 286 (825)
T PRK15102 207 WPLILENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPL 286 (825)
T ss_pred cHHHHHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHH
Confidence 3 45799999999999998874 332 1234444333479999999999999874 1 2 255532
Q ss_pred ---------------------------------------------HHHHHH----cCHHHHHHHHhcCCCcEEEEcCCcc
Q 004627 487 ---------------------------------------------TLLEIA----EGRHPFFSAISNAKNPVIIVGAGLF 517 (741)
Q Consensus 487 ---------------------------------------------~l~~i~----~gi~~lA~~l~~a~~~~Ii~G~g~~ 517 (741)
++++++ +.|+++|++|++ +++.|++|+++.
T Consensus 287 ~lam~~~ii~e~l~D~~Fv~~~t~Gfd~~~~~l~g~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~-~~~~i~~g~g~~ 365 (825)
T PRK15102 287 MLALAHTLYSENLYDKKFIDNYCLGFEQFLPYLLGEKDGVPKTPEWAEKICGIDAETIRELARQMAK-GRTQIIAGWCIQ 365 (825)
T ss_pred HHHHHHHHHHCCcccHHHHHHHccCHHHHHHHhcccccCCcCCHHHHHHHHCcCHHHHHHHHHHHHh-cCCEEEEeechh
Confidence 233332 238999999998 457788999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCc-----hhhh----hhhhhc----------------C---CCCCC--
Q 004627 518 ERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLL-----NAAQ----AAALDL----------------G---LVPES-- 567 (741)
Q Consensus 518 ~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~-----~~~~----~g~~~~----------------g---~~p~~-- 567 (741)
++.||.+..+++.+|+++||++|++|+|++.... ..+. .+.+.. | ..|..
T Consensus 366 ~~~~g~~~~rai~~L~altGnig~pGgg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 445 (825)
T PRK15102 366 RQQHGEQPYWMGAVLAAMLGQIGLPGGGISYGHHYSGIGVPSSGGAIPGGFPGNLDTGQKPKHDNSDYKGYSSTIPVARF 445 (825)
T ss_pred hhhhhHHHHHHHHHHHHHhccCCCCCCccccccccCCCCCCCcccccccCccccCCcccCccccccccccccccccHHHH
Confidence 9999999999999999999999999987653210 0000 000000 0 00100
Q ss_pred -----C-C----------CccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCC
Q 004627 568 -----S-N----------SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKE 623 (741)
Q Consensus 568 -----~-~----------~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~ 623 (741)
. . ..++||++|++++||+. .++|++++|+|++|+|+|+|++|||||||+++|+|++
T Consensus 446 ~~~i~~~g~~~~~~g~~~~~~~ik~l~v~g~Np~~s~p~~~~~~~al~~ldf~Vv~D~~~teTa~~ADiVLPaa~~~E~~ 525 (825)
T PRK15102 446 IDAILEPGKTINWNGKKVTLPPLKMMIFSGTNPWHRHQDRNRMKEAFRKLETVVAIDNQWTATCRFADIVLPACTQFERN 525 (825)
T ss_pred HHHHhcCCceeccCCCcccCCCeEEEEECCCCHHHcCcCHHHHHHHhcCCCEEEEecCccCchHhhCCEEeecCcccccC
Confidence 0 0 01369999999999953 4689999999999999999999999999999999999
Q ss_pred ceE--Ec-CCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCC
Q 004627 624 GTY--EN-TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPY 666 (741)
Q Consensus 624 gt~--~n-~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y 666 (741)
+.. .+ ...+++..+|+|+|+||+|+||||+++||++||.+..|
T Consensus 526 d~~~~g~~~~~~~~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~ 571 (825)
T PRK15102 526 DIDQYGSYSNRGIIAMKKVVEPLFESRSDFDIFRELCRRFGREKEY 571 (825)
T ss_pred cccccccccccceeeeeeccCCcccccCHHHHHHHHHHHhCCcccc
Confidence 642 11 13579999999999999999999999999999987544
No 55
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=100.00 E-value=5.5e-47 Score=426.30 Aligned_cols=321 Identities=26% Similarity=0.382 Sum_probs=248.6
Q ss_pred CCCCcEEe---CCCCCeeecCHHHHHHHHHHHHHhcC----CCcEEE-EECCCCCHHHHHHHHHHHHHcCCCcccCCCCc
Q 004627 339 RLNDPMIR---GADGRFKAVNWRDALAVVAEVMLQAK----PEEIVG-IAGRLSDAESMMALKDFLNRMGSNNVWCEGTG 410 (741)
Q Consensus 339 RL~~PliR---~g~g~~~~iSWdeAl~~iA~~Lk~i~----~~~i~~-~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~ 410 (741)
||++||+| +|+|+|++|||||||++||++|++++ +++|++ ..|+..+.++.+++++|++.+|++++......
T Consensus 1 Rl~~Pl~R~g~rg~~~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (432)
T PF00384_consen 1 RLKYPLKRVGERGDGKFVRISWDEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQ 80 (432)
T ss_dssp B--S-EEEHCSTTSSSEEE--HHHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEG
T ss_pred CCCcceEccccCCCCCEEEccHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999 77899999999999999999999954 468874 55677779999999999999999766655544
Q ss_pred chhh-----hhhh----cCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccc-
Q 004627 411 AQSN-----ADLR----SGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH- 480 (741)
Q Consensus 411 ~~~~-----~~~~----~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~- 480 (741)
|... ..++ ....++.++.|+++||+||+||+||..++|+...+++++.+++|+|+|+|||+++.++..++
T Consensus 81 ~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~ 160 (432)
T PF00384_consen 81 CDTCMASAAEAFGGDFVGGPAFGNPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADE 160 (432)
T ss_dssp GGCTTHHHHHHHSSHSHTSSSCCSHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSE
T ss_pred cccccchhhhheecccccCcccccccceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccc
Confidence 4221 1222 23344567789999999999999999999999777777667799999999999998876654
Q ss_pred -----cCCCHHHHHH----------------------------------------HH----cCHHHHHHHHhcCCC-cEE
Q 004627 481 -----LGTGPKTLLE----------------------------------------IA----EGRHPFFSAISNAKN-PVI 510 (741)
Q Consensus 481 -----lG~d~~~l~~----------------------------------------i~----~gi~~lA~~l~~a~~-~~I 510 (741)
+|+|...+.. ++ +.|+++|+.++++++ +++
T Consensus 161 ~i~i~PGtD~al~~a~~~~ii~~~~~d~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~A~~~~~~~~~~~~ 240 (432)
T PF00384_consen 161 WIPIRPGTDAALALAMAHVIIDEGLYDKEFIEKYTYGFDYTNAPLLVYTDEDAAEICGVPAEKIRELAREYAKAAPKAAI 240 (432)
T ss_dssp EEEE-TTTHHHHHHHHHHHHHHTTTSTHHHHHHHEECHHHHHHHHTTTTTHHHHHHHTSHHHHHHHHHHHHHHSTS-EEE
T ss_pred cccccccccHHhhcccccceeeccccccchhhhhhhhhhhhhhhhhcccccccceEEEechhhcccccccccccccccch
Confidence 3776543211 11 127899999988876 888
Q ss_pred EEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhh-hhhcC---------------------------
Q 004627 511 IVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAA-ALDLG--------------------------- 562 (741)
Q Consensus 511 i~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g-~~~~g--------------------------- 562 (741)
++|.|..++.+|.++.+++..|+.++|+++++|+|+..+.+..+..+ +...+
T Consensus 241 ~~g~g~~~~~~g~~~~~a~~~L~~l~G~i~~~Ggg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (432)
T PF00384_consen 241 IWGWGITRHSNGEQTARAIANLAALTGNIGKPGGGIFPLGGPPNVPGYANPVGPLPVDPPADGFPYGKPKFWKEGPGNLK 320 (432)
T ss_dssp EESHHHHSSTTHHHHHHHHHHHHHHHTTTTSTTBEEEEESSSTTHTTTHHHTTSSTTEECTTEETCHHHHHHCGHTTHSC
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhhcceeecccccccccccccccccccccccccccccccchhhhhhhhhccCccccc
Confidence 99999999999999999999999999999999998887653222211 11111
Q ss_pred CCCCCC-------CCccCceEEEEeccCccC--------ccCCCCCCeEEEEcccCCccccccceeccCCCCCCCCceEE
Q 004627 563 LVPESS-------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYE 627 (741)
Q Consensus 563 ~~p~~~-------~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~ 627 (741)
..|... ...++++++|+++.||+. .+++.+++|+|++|.|+|+|+++||||||+++|+|++|++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~~~~~~al~k~~~~V~~d~~~teta~~ADiiLP~~~~~E~~~~~~ 400 (432)
T PF00384_consen 321 FPPGNDFVEAINAIEDGKIKALFVLGGNPAQSFPDSNKVIEALKKLDFVVVIDPFMTETAKYADIILPAATWLEREDTVV 400 (432)
T ss_dssp SSSTTEHHHHHHHHHTTSSSEEEEESCSHHHHSSSHHHHHHHHTTTSEEEEEESSCTHHHHTSSEEEEBE-GGGSEEEEE
T ss_pred hhhhhhhhhhhhhccccceeeeeccccceeeecccchhhhhhcccccceecccccchhhcchhheecccCCccccCCccc
Confidence 111111 035689999999999942 45788999999999999999999999999999999999999
Q ss_pred cCCCeeEeeccccCCCCCCccHHHHHHHHHHH
Q 004627 628 NTEGCTQQTLPAVPTVGDARDDWKIIRALSEV 659 (741)
Q Consensus 628 n~eg~vq~~~~av~P~gear~d~~Il~~La~~ 659 (741)
+.+|+++..+|+|+|+||+|+||||+.+||+|
T Consensus 401 ~~~~~~~~~~~~v~p~ge~~~d~~I~~~la~r 432 (432)
T PF00384_consen 401 NAEGRVQRRNPVVEPPGEARSDWEIFRELAKR 432 (432)
T ss_dssp ETTSEEEEEEESSC-STT-BEHHHHHHHHHHH
T ss_pred CCcCchhhcccccCCCccCChHHHHHHHHhcC
Confidence 99999999999999999999999999999986
No 56
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=100.00 E-value=3.7e-46 Score=382.71 Aligned_cols=206 Identities=32% Similarity=0.566 Sum_probs=184.0
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhHH
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAK 148 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~~ 148 (741)
+|+|+|||+++++++|+|||+|++++|++||++|+|+.++..|.|+.|+|+|+|.+++++||+|+|++||+|.|++++++
T Consensus 3 ~v~i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~~~~~ 82 (234)
T PRK07569 3 VKTLTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNTPRLQ 82 (234)
T ss_pred eEEEEECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECCHHHH
Confidence 39999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhc
Q 004627 149 KAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVA 228 (741)
Q Consensus 149 ~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~ 228 (741)
..|+.+|++||.|||+||++|+++|+|+||+++..||+...+|.......+....+|.+.+|++|||+|++|+++|+++.
T Consensus 83 ~~rk~~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~d~~kCi~Cg~Cv~aC~~i~ 162 (234)
T PRK07569 83 EYRRMIVELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGIDHNRCVLCTRCVRVCDEIE 162 (234)
T ss_pred HHHHHHHHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEeehhhCcCccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888886543322223357899999999999999999999988
Q ss_pred CcceeeeecCCCCceeeeccc----CCccccccccccccccCcccccccc
Q 004627 229 GVQDLGMLGRGSGEEIGTYVE----KLMTSELSGNVIDICPVGALTSKPF 274 (741)
Q Consensus 229 g~~~l~~~~r~~~~~i~~~~~----~~~~c~~cg~cv~vCP~gAl~~~~~ 274 (741)
+...+...+|+....+....+ ....|.+||+|+++||+|||+.+..
T Consensus 163 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 163 GAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred CCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 888888777776666654332 2346999999999999999998875
No 57
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=100.00 E-value=1.6e-35 Score=302.41 Aligned_cols=352 Identities=16% Similarity=0.219 Sum_probs=278.9
Q ss_pred eeecCCCCCCCC-CceEeeeCCEEEEEcCCCCCCCCccccccccccccccC-CCCCCCCcEEeCCCCCeeecCHHHHHHH
Q 004627 286 TETIDVTDAVGS-NIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGL-KSQRLNDPMIRGADGRFKAVNWRDALAV 363 (741)
Q Consensus 286 ~~siC~~C~~gC-~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l-~~~RL~~PliR~g~g~~~~iSWdeAl~~ 363 (741)
..-+|++|+.-| .|.|.+.+|+| ++.- .|-.|.+-|... +++|++.||++. +|+|+++|||||++.
T Consensus 4 k~~vCp~CG~lCDDI~v~~e~~~i-~~~n----------aCr~G~akF~~~~~~~R~~~p~ik~-~g~~k~v~~deAie~ 71 (429)
T COG1029 4 KNVVCPFCGTLCDDIEVEVEDGKI-EVRN----------ACRIGNAKFKEAFSDHRIKAPMIKD-DGELKPVDYDEAIEK 71 (429)
T ss_pred eeEEcCcccccccceEEEecCCee-eehh----------HHhhhHHHHhhhcccccccCceEec-CCceeeccHHHHHHH
Confidence 456899999999 69999999998 6532 699999999887 589999999998 899999999999999
Q ss_pred HHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhh--cCcccCCCcccccc-CCEEEEEc
Q 004627 364 VAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLR--SGYIMNTSISGLEK-ADCFLLVG 440 (741)
Q Consensus 364 iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~--~~~~~~~~~~di~~-ad~Ill~G 440 (741)
+|+.|.+. .+...|.+..+++|...+.-.+++.+|+ .+|...++|.....++ .....+.++.+++| ||+||+||
T Consensus 72 Aa~ILv~a--KrPllyg~s~tscEA~~~gielaE~~ga-viD~~asvchGp~~~alqe~g~p~~TlgevKNraDviVyWG 148 (429)
T COG1029 72 AAEILVNA--KRPLLYGWSSTSCEAQELGIELAEKLGA-VIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIVYWG 148 (429)
T ss_pred HHHHHHhc--cCceEeccccchHHHHHHHHHHHHHhCc-EecCCCccccchHHHHHHhcCCcccchhhhcccccEEEEeC
Confidence 99999987 4567788888899998888899999997 6777777774333222 23344678889865 99999999
Q ss_pred CChhhhhhHHHHHHHH----HHH---hCCCEEEEEccCCCCCccccc------cCCCHHHHHHHH---c-----------
Q 004627 441 TQPRVEAAMVNARIRK----TVR---ANNAKVGYIGPATDLNYDHQH------LGTGPKTLLEIA---E----------- 493 (741)
Q Consensus 441 ~Np~~~~p~~~~rlr~----a~~---~~gakiivIdp~~~~t~~~~~------lG~d~~~l~~i~---~----------- 493 (741)
+||.+++|.+..|..- -++ +.+.++|+||||.+.|+..++ ++.|.+.++++. .
T Consensus 149 tNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDyelisAl~~~l~G~~~~~~eev~ 228 (429)
T COG1029 149 TNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDYELISALRAALHGKEPHRSEEVA 228 (429)
T ss_pred CCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcHHHHHHHHHHhcCCCCCCchhhc
Confidence 9999999988776321 112 245699999999999988775 378888776663 1
Q ss_pred C-----HHHHHHHHhcCCCcEEEEcCCccc----CCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhh-----hh
Q 004627 494 G-----RHPFFSAISNAKNPVIIVGAGLFE----RKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAA-----AL 559 (741)
Q Consensus 494 g-----i~~lA~~l~~a~~~~Ii~G~g~~~----~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g-----~~ 559 (741)
| +.++++.+++++-.+|.+|.|+.+ |.|...+..++..|+..+.. -+.++.++.|..| .|
T Consensus 229 gvp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~------tli~mrgH~Nv~GFnqv~~~ 302 (429)
T COG1029 229 GVPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKF------TLIPMRGHYNVTGFNEVLSW 302 (429)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceE------EEEEeccccccccccchhhh
Confidence 2 789999999999999999999854 56777777777777766533 2444445444433 34
Q ss_pred hcCC-------------CCCCCC-----CccCceEEEEeccCccC------ccCCCCCCeEEEEcccCCccccccceecc
Q 004627 560 DLGL-------------VPESSN-----SIESAKFVYLMGADDVD------LEKLPNDAFVVYQGHHGDHGVYRANVILP 615 (741)
Q Consensus 560 ~~g~-------------~p~~~~-----~~~~ik~l~l~g~np~~------~~al~k~~fvV~~d~~~~eta~~ADvVLP 615 (741)
..|+ .|+.-. ...++++.+++++||.. .+-|.+.+ +|++|++++.|+..||||+|
T Consensus 303 e~GYpf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIP-vI~iDp~~~pTt~vadVviP 381 (429)
T COG1029 303 ETGYPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIP-VICIDPHPTPTTEVADVVIP 381 (429)
T ss_pred hhCCceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCC-EEEecCCCCcchhhcceecc
Confidence 4443 222111 45689999999999954 24567777 78999999999999999999
Q ss_pred CCC-CCCCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhC
Q 004627 616 ASA-FSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 661 (741)
Q Consensus 616 ~a~-~~Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg 661 (741)
.+- ..|.+||++.+||....++|++++ ..++|.+||+.|-+++.
T Consensus 382 ~aI~gmE~~GTayRmD~V~v~~k~~~es--~~~sde~iLk~l~ekv~ 426 (429)
T COG1029 382 SAIDGMEAEGTAYRMDGVPVRMKPVVES--KTLSDEEILKKLLEKVK 426 (429)
T ss_pred cceeeeeccceEEeecCceEeeEecccc--cccChHHHHHHHHHHHh
Confidence 996 679999999999999999999998 57899999999988763
No 58
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]
Probab=99.96 E-value=1.2e-28 Score=274.05 Aligned_cols=375 Identities=15% Similarity=0.149 Sum_probs=271.0
Q ss_pred eeeeeecC-CCCCCCCCceEeeeCCEEEEEcCC-------CCCCCCccccccccccccccCC-CCCCCCcEEeC------
Q 004627 283 LKGTETID-VTDAVGSNIRIDSRGPEVMRILPR-------LNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG------ 347 (741)
Q Consensus 283 l~~~~siC-~~C~~gC~i~v~vrdg~V~rI~p~-------~~~~~n~g~iC~KGr~~~~~l~-~~RL~~PliR~------ 347 (741)
.|.+.|+- ++|...|..+|+|+||-|.--... ++-|.-|.+-|+||.+.-=++| |.|+++|++|+
T Consensus 44 DKvVRSTHGVNCTGSCSWkIYVKdGiITWEtQqtDYP~tgPD~PnyEPRGCPRGASfSWY~YSp~RvkyPyiRg~L~emw 123 (1227)
T COG5013 44 DKVVRSTHGVNCTGSCSWKIYVKNGLITWETQQTDYPRTGPDLPNYEPRGCPRGASFSWYLYSPNRVKYPYIRGRLIEMW 123 (1227)
T ss_pred cceeeccCCccccceeeEEEEEeCCEEEEeeccccCCCCCCCCCCCCCCCCCCCCceeeEEeccccccchhHHHHHHHHH
Confidence 35667776 789999999999999999765433 3335557789999975444455 99999999993
Q ss_pred -------------------------------CCCCeeecCHHHHHHHHHHHH----HhcCCCcEEEEEC-CCCCHHHHHH
Q 004627 348 -------------------------------ADGRFKAVNWRDALAVVAEVM----LQAKPEEIVGIAG-RLSDAESMMA 391 (741)
Q Consensus 348 -------------------------------g~g~~~~iSWdeAl~~iA~~L----k~i~~~~i~~~~g-~~~~~e~~~~ 391 (741)
|.|.|+++||+||.+.||..+ |...|++|+.|+. +-.+.-+..+
T Consensus 124 REAk~~~gDPV~AWa~IvedP~krk~Yk~aRGkGG~VR~~W~E~~EiIAAA~vyTIk~YGPDRv~GFSPIPAMSmVSyAA 203 (1227)
T COG5013 124 REAKARHGDPVEAWASIVEDPDKRKSYKQARGKGGFVRSSWDEVNELIAAANVYTIKTYGPDRVAGFSPIPAMSMVSYAA 203 (1227)
T ss_pred HHHHHhhCCHHHHHHHHHhCHHHHHHHHHhccCCceEEecHHHHHHHHHHhhhhhhhhcCCccccCcCCcchhhhhhhhc
Confidence 468899999999999999875 4556899987765 4445555666
Q ss_pred HHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEE
Q 004627 392 LKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGY 467 (741)
Q Consensus 392 ~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiiv 467 (741)
-.+|++.+|.....+..-+| +....||...- -..-.|+-|+-+|+.||+|.-.+.....+++.+++ .+|+|+++
T Consensus 204 GaRfl~LIGGvmlSFYDWYaDLPpASPQvwGeQTD-VPESaDWynssyii~wGsNvP~TRTPDahf~te~R-YkGtK~v~ 281 (1227)
T COG5013 204 GARFLSLIGGVMLSFYDWYADLPPASPQTWGEQTD-VPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVR-YKGTKTVV 281 (1227)
T ss_pred cchHHHHhcchhcchhhhhcCCCCCCcccccccCC-CCcccccccceeeeeeccCCCccCCCchhhHHHhh-hcCcceEE
Confidence 78999999976555444333 33344544311 12347889999999999999888877788888875 49999999
Q ss_pred EccCCCCCcccccc------CCC---------------------------------------------------------
Q 004627 468 IGPATDLNYDHQHL------GTG--------------------------------------------------------- 484 (741)
Q Consensus 468 Idp~~~~t~~~~~l------G~d--------------------------------------------------------- 484 (741)
|.|++......+++ |+|
T Consensus 282 vspDyae~~KfaD~Wl~~~~GtD~Ala~amgHViL~Ef~v~~~~~~f~dY~r~ytD~P~Lv~L~~~dg~y~~grfLrasd 361 (1227)
T COG5013 282 VSPDYAEVAKFADLWLAPKQGTDAALAMAMGHVILKEFHVDNPSDYFIDYVRRYTDMPMLVMLEERDGSYVPGRFLRASD 361 (1227)
T ss_pred ECCchHHhhhccccccCccCCCcHHHHhccceEEEEEEecCCCcHHHHHHHHHhcCCcceEEeccccCCcCCcceeehhh
Confidence 99986533111000 000
Q ss_pred --------------------------------------------------------------------------------
Q 004627 485 -------------------------------------------------------------------------------- 484 (741)
Q Consensus 485 -------------------------------------------------------------------------------- 484 (741)
T Consensus 362 l~~~~~~~~~~~wk~~~~d~~~~~~~~p~Gsig~Rwge~gkwnl~~~~~~~g~~~~~~~~l~~~~~~~~~v~fp~f~~~~ 441 (1227)
T COG5013 362 LVDELGQANNPEWKTVALDETTGELVVPNGSIGFRWGEKGKWNLELRDVATGAETELQLSLLGQHDEVAEVAFPYFGGDG 441 (1227)
T ss_pred ccCccccccccccchheeccCCCceeccccceeeeeCCcccceEeeccccCccccccchhhccchhheeeeecccccCCC
Confidence
Q ss_pred ------------------------------------------------------------HHHHHHHHcC-----HHHHH
Q 004627 485 ------------------------------------------------------------PKTLLEIAEG-----RHPFF 499 (741)
Q Consensus 485 ------------------------------------------------------------~~~l~~i~~g-----i~~lA 499 (741)
|++-+++ +| +.++|
T Consensus 442 ~~~~~~~l~r~vP~~~~~la~g~~~~v~tvfdl~~A~yGv~Rgl~~~~~~~~y~D~~~yTPAWqE~i-TgV~~~~~i~~a 520 (1227)
T COG5013 442 GPKHDGVLLRGVPVKRLTLADGSTALVTTVFDLLLANYGVDRGLLDGNSAKSYDDPKPYTPAWQEQI-TGVPRAQAIRIA 520 (1227)
T ss_pred CcccCceeeecccceeeecccCCceeEEEEehhhhhhhChhhccCCcccccccCCCccCCchhhhhh-hCccHHHHHHHH
Confidence 0000000 11 45788
Q ss_pred HHHhcC-----CCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCch----------------------
Q 004627 500 SAISNA-----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLN---------------------- 552 (741)
Q Consensus 500 ~~l~~a-----~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~---------------------- 552 (741)
++|+.. ++++||+|.|+++..+...+.+.+.+|..++|..|..|+|.....+.
T Consensus 521 rEfA~nA~~t~GRsmii~GaginHw~h~D~~YR~vlnl~~l~g~~G~nGGGWAHYVGQEKlRp~~GW~~~Afa~DW~rPP 600 (1227)
T COG5013 521 REFADNADKTHGRSMIIVGAGINHWYHSDMNYRGVLNLLMLCGCVGQNGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPP 600 (1227)
T ss_pred HHHHhcccccCCceeEEeccccchhhhhHHHHHHHHHHHHHhccccccCCcceeeccceeecccccchhhhhhcccCCCc
Confidence 888763 58999999999999999999999999999999999887765321110
Q ss_pred --hhh---------------------------------------hhhhhcCCCCCCC-----------------------
Q 004627 553 --AAQ---------------------------------------AAALDLGLVPESS----------------------- 568 (741)
Q Consensus 553 --~~~---------------------------------------~g~~~~g~~p~~~----------------------- 568 (741)
-|. +-+..+|..|...
T Consensus 601 R~~n~tsffY~htdQWRye~~~~~~l~sP~a~~~~~~~h~~D~nv~a~r~GWlPs~Pq~n~npL~~~~ea~a~g~~~~~~ 680 (1227)
T COG5013 601 RQMNSTSFFYNHTDQWRYEKVTADELLSPLADRSRYSGHLIDFNVRAERMGWLPSAPQLNRNPLDIADEAEAAGLDPVDY 680 (1227)
T ss_pred cccCCCceEEecccceecccccHhhhhCccccccccCCcchhhhHHHHHhCCCCCCcccCCCchhhHHHHHHcCCCHHHH
Confidence 000 0011234444320
Q ss_pred ------------------CCccCceEEEEeccCccC-------------------------------------ccCC-CC
Q 004627 569 ------------------NSIESAKFVYLMGADDVD-------------------------------------LEKL-PN 592 (741)
Q Consensus 569 ------------------~~~~~ik~l~l~g~np~~-------------------------------------~~al-~k 592 (741)
....-++.||++-+|.+. .++. .|
T Consensus 681 v~~~Lk~g~l~~a~EdPD~p~N~PR~lfvWRsNLlgSSgKGhEyflkhLLGt~~~~~~~~~~~~~~p~ev~w~~~apEGK 760 (1227)
T COG5013 681 VVQQLKSGKLRFAIEDPDNPENHPRNLFVWRSNLLGSSGKGHEYFLKHLLGTDIQGLDLGASDGIKPEEVEWRDEAPEGK 760 (1227)
T ss_pred HHHHHhcCCeeEEecCCCCccCCcceeeeeehhhcccCCCcHHHHHHHHhCCccccccccccCCCCceeeEeeccCCCcc
Confidence 012236788888777631 0122 47
Q ss_pred CCeEEEEcccCCccccccceeccCCCCCCCCceEE-cCCCeeEeeccccCCCCCCccHHHHHHHHHHHh
Q 004627 593 DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYE-NTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA 660 (741)
Q Consensus 593 ~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek~gt~~-n~eg~vq~~~~av~P~gear~d~~Il~~La~~l 660 (741)
++++|.+|+.|+.|+.|+|||||+++|+||.+.-+ .+...+..+.+||+|+.|+|+||+|+.+||+++
T Consensus 761 LDLlv~lDFRmssT~lysDIVLPaATWYEK~DLsttDmHpfiHpfs~AvdP~WEsksDWeifk~iak~F 829 (1227)
T COG5013 761 LDLLVTLDFRMSSTCLYSDIVLPAATWYEKDDLSTTDMHPFIHPFSAAVDPAWESKSDWEIYKAIAKKF 829 (1227)
T ss_pred eeEEEEEeecccccceeeeeeecccceeecccCCccccccccccCccccCCcccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999754 567789999999999999999999999999986
No 59
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.85 E-value=1.6e-21 Score=229.29 Aligned_cols=150 Identities=27% Similarity=0.502 Sum_probs=125.5
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhHH
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAK 148 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~~ 148 (741)
+|+|+|||+++++++|+|||+|+..+|++||++|||+++.++|+||+|+|+|+|.+++++||+|++++||+|.|+++++.
T Consensus 3 ~v~~~idg~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~Gm~v~t~~~~~~ 82 (652)
T PRK12814 3 TISLTINGRSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEGMVIETENAELH 82 (652)
T ss_pred eEEEEECCEEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCCCEEEeCcHHHH
Confidence 38999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHhHHHHHHHhhCCCCCC-CcCCCCCChhhhHHhHhC--CCCCcccccccccccccCcccccccCCcccccchhHHHh
Q 004627 149 KAREGVMEFLLMNHPLDCP-ICDQGGECDLQDQSMAFG--SDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFA 224 (741)
Q Consensus 149 ~~r~~~le~~l~~hp~dC~-~C~~~gec~lq~~~~~~g--~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C 224 (741)
+.|+..||+||.||+++|. -|..+ |++.--...|= +...+|.+.-+.+.. ..|+..+=..-|.+ -|...|
T Consensus 83 ~~r~~~le~l~~~~c~~C~~pC~~~--CP~~~~~~~~~~~~~~g~~~~a~~~~~~--~~p~p~~~grvC~~--~Ce~~C 155 (652)
T PRK12814 83 AMRRQSLERLIEQHCGDCLGPCELA--CPAGCNIPGFIAAIARGDDREAIRIIKE--TIPLPGILGRICPA--PCEEAC 155 (652)
T ss_pred HHHHHHHHHHHhhcccccCCccccC--CCCCCcHHHHHHHHHCCCHHHHHHHHHh--hCCccceeeCCcCc--hhhHHH
Confidence 9999999999999999996 58754 77654333332 345677776544433 34666555666776 566666
No 60
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.84 E-value=1.9e-21 Score=165.75 Aligned_cols=76 Identities=45% Similarity=0.954 Sum_probs=60.3
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccC----CCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccc
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYH----SRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDT 144 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~----~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~ 144 (741)
+|+|+|||+++++++|+|||+|+.++|++||++||| +.++..|.|++|+|+|+|.++ ++||.|+|++||+|.|++
T Consensus 3 ~v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~-v~AC~t~v~~GM~V~T~s 81 (82)
T PF13510_consen 3 MVTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPN-VRACSTPVEDGMVVETQS 81 (82)
T ss_dssp EEEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEE-EETTT-B--TTEEEE---
T ss_pred EEEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcc-eEcccCCCcCCcEEEEeE
Confidence 599999999999999999999999999999999999 889999999999999999665 799999999999999987
Q ss_pred h
Q 004627 145 P 145 (741)
Q Consensus 145 ~ 145 (741)
+
T Consensus 82 ~ 82 (82)
T PF13510_consen 82 P 82 (82)
T ss_dssp -
T ss_pred C
Confidence 5
No 61
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=99.67 E-value=6.3e-18 Score=172.32 Aligned_cols=168 Identities=21% Similarity=0.327 Sum_probs=106.1
Q ss_pred EECCEEEEeCCCChHHHHHHHCC-CCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCC-CCEEEccchhHHHH
Q 004627 73 FVDGYPLKIPKGFTVLQACEVAG-VDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALP-GMKIKTDTPLAKKA 150 (741)
Q Consensus 73 ~idg~~~~~~~g~tvl~a~~~~g-~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~-gm~v~t~~~~~~~~ 150 (741)
+.+..++++++|+|||+++..++ ..+|++||.... .+|.||+|.|+||| ++++||.|++.+ ||.+.|-.|
T Consensus 13 ~~~~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C-~~g~Cg~C~v~vnG--~~~laC~t~v~~~g~~~~~iep----- 84 (220)
T TIGR00384 13 HLQSYEVPADEGMTVLDALNYIKDEQDPSLAFRRSC-RNGICGSCAMNVNG--KPVLACKTKVEDLGQPVMKIEP----- 84 (220)
T ss_pred eeEEEEEeCCCCCcHHHHHHHHHHhcCCCceeeccc-CCCCCCCCeeEECC--EEhhhhhChHHHcCCCcEEEee-----
Confidence 35667888899999999999998 667999988765 58999999999999 567799999999 998666665
Q ss_pred HhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCC------CCcccccccccc-c-c-cCcc---cccccCCcccccc
Q 004627 151 REGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSD------RGRFTEMKRSVV-D-K-NLGP---LVKTVMTRCIQCT 218 (741)
Q Consensus 151 r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~------~~~~~~~~~~~~-~-~-~~~p---~i~~d~~rCI~C~ 218 (741)
|.++|. +.|+..+...- ...|...+.... . . ...| ....+..+||.||
T Consensus 85 --------l~~~pv------------ikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG 144 (220)
T TIGR00384 85 --------LPNLPV------------IKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQTPEQREKLDQLSGCILCG 144 (220)
T ss_pred --------CCCCce------------eeeeeechHHHHHHHHhcCCeecCCCCCCccccccCCHHHHHHHhhhhhccccc
Confidence 566665 45554443311 111111100000 0 0 0001 1112568999999
Q ss_pred hhHHHhhhhcCcc-eeee-----------ecCCC--Ccee--eecccCCccccccccccccccCcc
Q 004627 219 RCVRFATEVAGVQ-DLGM-----------LGRGS--GEEI--GTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 219 rCvr~C~~i~g~~-~l~~-----------~~r~~--~~~i--~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
+|+.+||...... .++. .+|.. ...+ .......+.|..||+|.++||+|-
T Consensus 145 ~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 145 CCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred cccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCCC
Confidence 9999999742211 1110 11110 0000 000134457999999999999974
No 62
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.62 E-value=6e-17 Score=174.28 Aligned_cols=62 Identities=15% Similarity=0.327 Sum_probs=55.1
Q ss_pred EECCEEEEeCCCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCCC
Q 004627 73 FVDGYPLKIPKGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 137 (741)
Q Consensus 73 ~idg~~~~~~~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~g 137 (741)
+.+.++|++++|+|||+|+.+++++| |++||+..+. .|.||.|.|+|||. +++||.|+|.++
T Consensus 17 ~~~~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~inG~--~~laC~t~v~~~ 79 (329)
T PRK12577 17 YVQTYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRINGR--SALACKENVGSE 79 (329)
T ss_pred eEEEEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEECCe--eecCcccchhhh
Confidence 35668899999999999999999999 6999998776 59999999999995 566999999875
No 63
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.60 E-value=1.7e-16 Score=166.43 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=103.8
Q ss_pred ECCEEEEeCCCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCC----CCEEEccchhHH
Q 004627 74 VDGYPLKIPKGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALP----GMKIKTDTPLAK 148 (741)
Q Consensus 74 idg~~~~~~~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~----gm~v~t~~~~~~ 148 (741)
.+..++++++|+|||+++.+++.++ |++||+... ..|.||.|.|+|||. +++||.|++.+ +-.+.|-.|
T Consensus 24 ~~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C-~~G~CgsC~v~ING~--~~laC~t~v~~~~~~~~~~~tieP--- 97 (279)
T PRK12576 24 WQEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASC-HMAVCGSCGMKINGE--PRLACKTLVLDVAKKYNSVITIEP--- 97 (279)
T ss_pred EEEEEEecCCCCHHHHHHHHhCCccCCCceecCCC-CCCCCCCCEEEECCc--EeccccCcHHHhhcCCCCcEEEEE---
Confidence 4567889999999999999999987 899998775 799999999999994 56799999976 223445444
Q ss_pred HHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCC------Cccccccccccccc----Ccc---cccccCCccc
Q 004627 149 KAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDR------GRFTEMKRSVVDKN----LGP---LVKTVMTRCI 215 (741)
Q Consensus 149 ~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~------~~~~~~~~~~~~~~----~~p---~i~~d~~rCI 215 (741)
|.+.|. +.|+..+...-. ..|...++.+.... ..| .-..+.++||
T Consensus 98 ----------l~~~~v------------ikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI 155 (279)
T PRK12576 98 ----------MDYFKV------------VKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCI 155 (279)
T ss_pred ----------CCCCce------------eecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCc
Confidence 555555 455544432111 11111111110000 000 1114678999
Q ss_pred ccchhHHHhhhhcCcce-eee-----------ecCCCC--ceeeecccCCccccccccccccccCcc
Q 004627 216 QCTRCVRFATEVAGVQD-LGM-----------LGRGSG--EEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 216 ~C~rCvr~C~~i~g~~~-l~~-----------~~r~~~--~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
.||+|+.+||....... ++. ..|+.. ..+.......+.|..||+|.++||.+-
T Consensus 156 ~CG~C~~~CP~~~~~~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~i~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 156 WCGLCVSACPVVAIDPEFLGPAAHAKGYRFLADPRDTITEERMKILIDSSWRCTYCYSCSNVCPRDI 222 (279)
T ss_pred ccCcccccCCCccccCCcCCHHHHHHHHHHhcCccccchHHHHHHHcCcCCcccCcccchhhCCCCC
Confidence 99999999997432111 111 112210 111111223457999999999999865
No 64
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=99.59 E-value=2.2e-16 Score=162.26 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=103.8
Q ss_pred EECCEEEEeC-CCChHHHHHHHCC-CCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCC-CEEEccchhHHH
Q 004627 73 FVDGYPLKIP-KGFTVLQACEVAG-VDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG-MKIKTDTPLAKK 149 (741)
Q Consensus 73 ~idg~~~~~~-~g~tvl~a~~~~g-~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~g-m~v~t~~~~~~~ 149 (741)
..++.+++++ +|+|||+++..+| +.+|++||+... ..|.||+|.|+|||. +++||.|++.+. ..+.|-.|
T Consensus 16 ~~~~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c-~~g~Cg~C~v~vnG~--~~laC~t~~~~~~~~~~tiep---- 88 (232)
T PRK05950 16 RMQTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSC-REGVCGSDAMNINGK--NGLACITPISDLKKGKIVIRP---- 88 (232)
T ss_pred eeEEEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCC-CCCCCCCCEEEECCc--CccchhChHhHcCCCeEEEEE----
Confidence 4688899999 9999999999999 778999998876 779999999999995 456999999874 45566555
Q ss_pred HHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccc------cccccc--cCccc---ccccCCcccccc
Q 004627 150 AREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMK------RSVVDK--NLGPL---VKTVMTRCIQCT 218 (741)
Q Consensus 150 ~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~------~~~~~~--~~~p~---i~~d~~rCI~C~ 218 (741)
|.++|. +.|+..+...-..++...+ ...... ...|. ...+..+||.||
T Consensus 89 ---------l~~~~v------------ikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg 147 (232)
T PRK05950 89 ---------LPGLPV------------IKDLVVDMTQFYAQYRSIKPYLINDTPPPARERLQSPEDREKLDGLYECILCA 147 (232)
T ss_pred ---------CCCCCe------------eeeceeehHHHHHHHHhccCeecCCCCCCchhccCCHHHHHHHHhHHhccccc
Confidence 555555 4444433221111111100 000000 00000 012567999999
Q ss_pred hhHHHhhhhcCcc--eeeee-----------cCCC--Cc--eeeecccCCccccccccccccccCcc
Q 004627 219 RCVRFATEVAGVQ--DLGML-----------GRGS--GE--EIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 219 rCvr~C~~i~g~~--~l~~~-----------~r~~--~~--~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
.|..+||...... .+|.. +|.. .. .+.......+.|..||+|.++||.|-
T Consensus 148 ~C~~~CP~~~~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 148 CCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGL 214 (232)
T ss_pred cccccCCccccCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCCC
Confidence 9999999642111 12211 1110 00 00001113457999999999999865
No 65
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=99.47 E-value=2.1e-14 Score=104.67 Aligned_cols=41 Identities=56% Similarity=1.175 Sum_probs=27.7
Q ss_pred HhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcc
Q 004627 151 REGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRF 191 (741)
Q Consensus 151 r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~ 191 (741)
|+.+||+||+|||+||++|+++|+|+||+++..||++..||
T Consensus 1 Rr~~lelll~~H~~dC~~C~~~G~CeLQ~~~~~~gv~~~~f 41 (41)
T PF10588_consen 1 RRTVLELLLANHPLDCPTCDKNGNCELQDLAYEYGVDEQRF 41 (41)
T ss_dssp -HHHHHHHHTT----TTT-TTGGG-HHHHHHHHH-S-----
T ss_pred CHHHHHHHHhCCCCcCcCCCCCCCCHHHHHHHHhCCCcCCC
Confidence 78999999999999999999999999999999999998887
No 66
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.45 E-value=7.1e-15 Score=151.42 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=50.8
Q ss_pred ECCEEEEeCCCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCC---CCEEEc
Q 004627 74 VDGYPLKIPKGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALP---GMKIKT 142 (741)
Q Consensus 74 idg~~~~~~~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~---gm~v~t 142 (741)
.++.++++++|+|||+|+..++.++ |++-|.. ...+|.||.|.|.||| ++++||.|++.+ +|.|.-
T Consensus 24 ~~~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~-~C~~giCGsC~v~InG--~~~laC~t~~~~~~~~~~ieP 93 (244)
T PRK12385 24 SQTYEVPYDETTSLLDALGYIKDNLAPDLSYRW-SCRMAICGSCGMMVNN--VPKLACKTFLRDYTGGMKVEA 93 (244)
T ss_pred eEEEEeeCCCCCcHHHHHHHHHHhcCCCceecc-CCCCCcCCCCcceECc--cChhhHhhHHHHcCCCeEEee
Confidence 4567788889999999999887655 4432221 2356999999999999 558899999985 777765
No 67
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=99.44 E-value=1.4e-14 Score=150.14 Aligned_cols=163 Identities=19% Similarity=0.241 Sum_probs=90.6
Q ss_pred EEEeCC-CChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCC-EEEccchhHHHHHhHH
Q 004627 78 PLKIPK-GFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGM-KIKTDTPLAKKAREGV 154 (741)
Q Consensus 78 ~~~~~~-g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm-~v~t~~~~~~~~r~~~ 154 (741)
+|++.+ |+|||+++..+..+. |.+.|- ..+.+|+||+|.|.||| ++++||.|.|.+.. ...|-.|
T Consensus 65 ~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr-~sCr~giCGsCam~ING--~p~LAC~t~v~~~~~~~i~ieP--------- 132 (276)
T PLN00129 65 KVDLNDCGPMVLDVLIKIKNEQDPSLTFR-RSCREGICGSCAMNIDG--KNTLACLTKIDRDESGPTTITP--------- 132 (276)
T ss_pred EeCCCCCCchHHHHHHHHHHcCCCCeEEe-ccCCCCCCCCCeeEECC--cccccccccHhhcCCCcEEEEE---------
Confidence 344444 899999999987554 544442 23467999999999999 56789999998653 2223333
Q ss_pred HHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccc------cccccc-cC---ccc---ccccCCcccccchhH
Q 004627 155 MEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMK------RSVVDK-NL---GPL---VKTVMTRCIQCTRCV 221 (741)
Q Consensus 155 le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~------~~~~~~-~~---~p~---i~~d~~rCI~C~rCv 221 (741)
|.|+|. +.|+..+...-..++...+ ...... .. .|. -.....+||.||.|.
T Consensus 133 ----l~~fpV------------irDLvVD~~~f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~ 196 (276)
T PLN00129 133 ----LPHMFV------------IKDLVVDMTNFYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCS 196 (276)
T ss_pred ----CCCCCe------------eeecccccHHHHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccc
Confidence 556665 4555544332111111111 000000 00 000 012345899999999
Q ss_pred HHhhhhc-------Ccceeeeec------CCC--Ccee--eecccCCccccccccccccccCcc
Q 004627 222 RFATEVA-------GVQDLGMLG------RGS--GEEI--GTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 222 r~C~~i~-------g~~~l~~~~------r~~--~~~i--~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
.+||.+. |...+.... |+. ...+ .......+.|..||+|.++||.|-
T Consensus 197 saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 197 TSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKGL 260 (276)
T ss_pred cccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCcChhhccccCCCCC
Confidence 9999532 111111111 111 0001 111113457999999999999875
No 68
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=99.43 E-value=8.4e-14 Score=159.06 Aligned_cols=68 Identities=28% Similarity=0.500 Sum_probs=58.8
Q ss_pred ECCEEEEeCCCChHHHHHHHCCCC-ccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccc
Q 004627 74 VDGYPLKIPKGFTVLQACEVAGVD-IPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDT 144 (741)
Q Consensus 74 idg~~~~~~~g~tvl~a~~~~g~~-ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~ 144 (741)
.+-.++++++|+|||+|+++++.+ +|.+||+... ..|.||+|.|+|+| ++++||+|++.+||+|.+..
T Consensus 20 ~~~~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C-~~g~Cg~C~v~v~G--~~~laC~~~~~~~~~i~~~~ 88 (486)
T PRK06259 20 FESYEVPVKEGMTVLDALEYINKTYDANIAFRSSC-RAGQCGSCAVTING--EPVLACKTEVEDGMIIEPLD 88 (486)
T ss_pred eEEEEEeCCCCChHHHHHHHhchhcCCCceecCCC-CCCCCCCCEEEECC--eEecccccCCCCCCEEEecC
Confidence 344566788999999999998876 8999998765 58999999999999 45779999999999999876
No 69
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=99.42 E-value=3.1e-14 Score=146.52 Aligned_cols=59 Identities=17% Similarity=0.419 Sum_probs=41.8
Q ss_pred EEEE-eCCCChHHHHHHHCCCCc-----cccccCCCCCCccccCccEEEEcCCCc----ccccccCCCCC
Q 004627 77 YPLK-IPKGFTVLQACEVAGVDI-----PRFCYHSRLSIAGNCRMCLVEVEKSPK----PVASCAMPALP 136 (741)
Q Consensus 77 ~~~~-~~~g~tvl~a~~~~g~~i-----p~~C~~~~l~~~G~C~~C~V~v~~~~~----~~~aC~~~v~~ 136 (741)
.+|+ +.+|+|||+||.++..+. +.+.| ...+.+|.||+|.|.|||.|. .++||.|.|.+
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~f-r~sCr~~iCGsCam~ING~p~~~~~~~LAC~t~~~~ 90 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAF-DHDCREGICGMCGLVINGRPHGPDRGTTTCQLHMRS 90 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeE-eccccCCcCCcceeEECCccCCCCcccchhhhhhhh
Confidence 4455 558999999999875332 33443 223477999999999999540 17899999853
No 70
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=99.41 E-value=1.8e-14 Score=148.59 Aligned_cols=164 Identities=12% Similarity=0.216 Sum_probs=90.6
Q ss_pred EEEEeCCCChHHHHHHHCCCC--------ccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhHH
Q 004627 77 YPLKIPKGFTVLQACEVAGVD--------IPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAK 148 (741)
Q Consensus 77 ~~~~~~~g~tvl~a~~~~g~~--------ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~~ 148 (741)
.+|++++++|||+|+..+..+ .+.+-| ...+.+|.||+|.|.||| ++.+||.|.|.+--...|-.|
T Consensus 25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~f-r~sCr~giCGsCam~ING--~p~LAC~t~v~~~~~~i~ieP--- 98 (249)
T PRK08640 25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVW-DMNCLEEVCGACSMVING--KPRQACTALIDQLEQPIRLEP--- 98 (249)
T ss_pred EEecCCCCCcHHHHHHHHHhcccccccccCCCeeE-ecccCCCCCCcCeeEECC--ccchhhhChHHHcCCcEEEEE---
Confidence 456677999999999988653 343333 122367999999999999 557899999954211223233
Q ss_pred HHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCC------CCcccccccccc--c---c-cCcccccccCCcccc
Q 004627 149 KAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSD------RGRFTEMKRSVV--D---K-NLGPLVKTVMTRCIQ 216 (741)
Q Consensus 149 ~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~------~~~~~~~~~~~~--~---~-~~~p~i~~d~~rCI~ 216 (741)
|.|.|. +.|+..+...- ...|-..+...+ + . ...-....+..+||.
T Consensus 99 ----------l~~fpV------------ikDLvVD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~ 156 (249)
T PRK08640 99 ----------MSTFPV------------VRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKRQWAYELSKCMT 156 (249)
T ss_pred ----------CCCCCc------------cccCcEEChHHHHHHHhhCCccccCCCCCCCcccCCCHHHHHHHhhhhhccC
Confidence 445554 44444332211 111111110000 0 0 000112246789999
Q ss_pred cchhHHHhhhhcCcc-eee-----ee------c-CCC-C-ceeee--cccCCccccccccccccccCcc
Q 004627 217 CTRCVRFATEVAGVQ-DLG-----ML------G-RGS-G-EEIGT--YVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 217 C~rCvr~C~~i~g~~-~l~-----~~------~-r~~-~-~~i~~--~~~~~~~c~~cg~cv~vCP~gA 268 (741)
||.|+.+||...... -+| .. . |.. . ..+.. .....+.|..||+|.++||.|-
T Consensus 157 CG~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkgI 225 (249)
T PRK08640 157 CGCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGI 225 (249)
T ss_pred cCcccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCCC
Confidence 999999999643211 111 11 1 110 0 01110 1122357999999999999865
No 71
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=99.40 E-value=4.5e-14 Score=144.90 Aligned_cols=59 Identities=20% Similarity=0.386 Sum_probs=46.2
Q ss_pred CCEEEEeCCCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCC
Q 004627 75 DGYPLKIPKGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALP 136 (741)
Q Consensus 75 dg~~~~~~~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~ 136 (741)
+-.+|++++|+|||+|+.++..++ |++.| ...+.+|+||+|.|.||| ++++||.|.|.+
T Consensus 24 ~~y~v~~~~~~tvLdaL~~Ik~~~D~sL~f-r~sCr~giCGsCam~ING--~~~LAC~t~v~~ 83 (239)
T PRK13552 24 VTYQLEETPGMTLFIALNRIREEQDPSLQF-DFVCRAGICGSCAMVING--RPTLACRTLTSD 83 (239)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCCCeeE-eccCCCCCCCCceeEECC--eEhhhhhccHhh
Confidence 335677789999999999987654 44443 223367999999999999 667899999976
No 72
>PRK08764 ferredoxin; Provisional
Probab=99.39 E-value=2e-13 Score=128.03 Aligned_cols=99 Identities=15% Similarity=0.278 Sum_probs=72.0
Q ss_pred HhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCccccc-ccCCcccccchhHHHhhhhcCcceeeeec
Q 004627 159 LMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVK-TVMTRCIQCTRCVRFATEVAGVQDLGMLG 237 (741)
Q Consensus 159 l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~-~d~~rCI~C~rCvr~C~~i~g~~~l~~~~ 237 (741)
+.+|.++|..|+.+|+|+||++++.||+...+|....... ..|.+. ++.++||+|++|+++||. .++....
T Consensus 35 ~v~g~~~~~~C~~~G~c~lq~~a~~~gv~~~~~~~~~~~~----~~~~~~~~~~~~Ci~C~~Cv~aCp~----~ai~~~~ 106 (135)
T PRK08764 35 MARGEATIDRCPPGGDAGARALAQVLGVPARPYDRSRGTH----KLPQVAWIVEADCIGCTKCIQACPV----DAIVGGA 106 (135)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHHHhCCCccccccccCCC----CCCeeEEECcccCcCcchHHHhCCh----hhcCccC
Confidence 5699999999999999999999999999877774322111 124343 467899999999999985 3333322
Q ss_pred CCCCceeeecccCCccccccccccccccCccccc
Q 004627 238 RGSGEEIGTYVEKLMTSELSGNVIDICPVGALTS 271 (741)
Q Consensus 238 r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~ 271 (741)
++.. .+ ....|..||.|+++||++||+.
T Consensus 107 ~~~~-~v-----~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 107 KHMH-TV-----IAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred CCce-ee-----cCCcCcCccchhhhcCccceEe
Confidence 2211 11 1235999999999999999863
No 73
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.39 E-value=4.7e-14 Score=144.91 Aligned_cols=168 Identities=17% Similarity=0.270 Sum_probs=97.6
Q ss_pred ECCEEEEeCCCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCC--CCCEEEccchhHHHH
Q 004627 74 VDGYPLKIPKGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPAL--PGMKIKTDTPLAKKA 150 (741)
Q Consensus 74 idg~~~~~~~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~--~gm~v~t~~~~~~~~ 150 (741)
.+-.++++++++|||++++.++.++ |.+-|. .-+.+|.||+|.|.||| ++++||.|++. +|..+.|-.|
T Consensus 19 ~q~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r-~~C~~g~CGsCa~~InG--~p~laC~t~~~~~~~~~~itiep----- 90 (251)
T PRK12386 19 LQDYTVEVNEGEVVLDVIHRLQATQAPDLAVR-WNCKAGKCGSCSAEING--RPRLMCMTRMSTFDEDETVTVTP----- 90 (251)
T ss_pred eEEEEEeCCCCCCHHHHHHHhccccCCCCccc-CCCCCCcCCCCEEEECc--cEeccHHhHHHHhCCCCeEEEcc-----
Confidence 3446777889999999999988753 434332 22367999999999999 67889999996 4445666555
Q ss_pred HhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCC------Ccccccccccccc----cCcccccccCCcccccchh
Q 004627 151 REGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDR------GRFTEMKRSVVDK----NLGPLVKTVMTRCIQCTRC 220 (741)
Q Consensus 151 r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~------~~~~~~~~~~~~~----~~~p~i~~d~~rCI~C~rC 220 (741)
|.|+|+ +.|+..+...-. ..|...+...++. .....-......||.||.|
T Consensus 91 --------l~~fpV------------ikDLvVD~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C 150 (251)
T PRK12386 91 --------MRTFPV------------IRDLVTDVSFNYEKAREIPSFTPPKDLQPGEYRMQQVDVERSQEFRKCIECFLC 150 (251)
T ss_pred --------CCCCCc------------cccceEEcHHHHHHHHhcCCcccCCCCCccccCCCHHHHHHHhchhhcccCCcc
Confidence 556665 444443322111 1111110000000 0000112457789999999
Q ss_pred HHHhhhhcC-----cceeee-----------ecCCCCce--eeecccCCccccccccccccccCccc
Q 004627 221 VRFATEVAG-----VQDLGM-----------LGRGSGEE--IGTYVEKLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 221 vr~C~~i~g-----~~~l~~-----------~~r~~~~~--i~~~~~~~~~c~~cg~cv~vCP~gAl 269 (741)
+.+||...- ..-+|. ..|+.... ..........|..||+|.++||.|--
T Consensus 151 ~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~~~rl~~~~~~~gl~~C~~C~~C~~vCPkgI~ 217 (251)
T PRK12386 151 QNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTADRRAEAQEEHGLGYCNITKCCTEVCPEHIK 217 (251)
T ss_pred cCcCCcccccCCCcccccCHHHHHHHHHhhcCccchHHHHHHhhcccCcccCcCCCCcCCcCCCCcC
Confidence 999996421 112221 11111011 11111234569999999999999754
No 74
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=99.37 E-value=2.4e-13 Score=134.76 Aligned_cols=104 Identities=15% Similarity=0.293 Sum_probs=76.1
Q ss_pred CCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeee
Q 004627 167 PICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGT 246 (741)
Q Consensus 167 ~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~ 246 (741)
..|+.+|+|+||+++..||+...++........ ...+.+.+|.++||+|++|+++||. +++...+++... +
T Consensus 71 ~~C~~~G~c~lq~la~~~Gv~~~~~~~~~~~~~--~~~~~~~id~~~Ci~Cg~Cv~aCp~----~ai~~~~~~~~~-v-- 141 (191)
T PRK05113 71 NKCPPGGEATMLKLAELLGVEPQPLDGEAQEAT--PARKVAFIDEDNCIGCTKCIQACPV----DAIVGATKAMHT-V-- 141 (191)
T ss_pred CcCCCCchHHHHHHHHHhCCCcccCcccccccc--ccCceeEEeCCcCCCCChhhhhCCH----hhhecccCCcee-e--
Confidence 458899999999999999998877754322111 1234566799999999999999985 344333333211 1
Q ss_pred cccCCccccccccccccccCcccccccccccccccc
Q 004627 247 YVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWE 282 (741)
Q Consensus 247 ~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~we 282 (741)
....|..||.|+++||++||+.+++.++.++|.
T Consensus 142 ---~~~~C~~Cg~Cv~vCP~~AI~~~~~~~~~~~w~ 174 (191)
T PRK05113 142 ---ISDLCTGCDLCVAPCPTDCIEMIPVAETPDNWK 174 (191)
T ss_pred ---cCCcCCchHHHHHHcCcCceEEeeccccccCCc
Confidence 123599999999999999999999887767664
No 75
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=99.36 E-value=9e-14 Score=139.73 Aligned_cols=166 Identities=21% Similarity=0.360 Sum_probs=96.0
Q ss_pred CCEEEEeCCCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCE-EEccchhHHHHHh
Q 004627 75 DGYPLKIPKGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMK-IKTDTPLAKKARE 152 (741)
Q Consensus 75 dg~~~~~~~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~-v~t~~~~~~~~r~ 152 (741)
+-.+|++.+|+|||+|+..+.-++ |.+-| ...+.+|+||+|.|.||| ++++||.|.+.+.-. +.|-.|
T Consensus 20 ~~yev~~~~~~~vLdaL~~Ik~e~d~~Lsf-r~sCR~gICGSCam~ING--~prLAC~t~~~~~~~~~i~ieP------- 89 (234)
T COG0479 20 QTYEVPYDEGMTVLDALLYIKEEQDPTLSF-RRSCREGICGSCAMNING--KPRLACKTLMKDLEEGVITIEP------- 89 (234)
T ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCccch-hhhccCCcCCcceeEECC--ccccchhchhhhccCCceEEEE-------
Confidence 335566679999999999988554 44432 223377999999999999 456799999987532 333333
Q ss_pred HHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCccccccccccc---ccCcc--------cccccCCcccccchhH
Q 004627 153 GVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVD---KNLGP--------LVKTVMTRCIQCTRCV 221 (741)
Q Consensus 153 ~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~---~~~~p--------~i~~d~~rCI~C~rCv 221 (741)
|.+.|. +.|+..+...-..++...|.-+.. ...++ .-..+...||.||.|+
T Consensus 90 ------L~~fpV------------IkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~Cg~C~ 151 (234)
T COG0479 90 ------LPNFPV------------IRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGERLQSPEEREKLDELSECILCGCCT 151 (234)
T ss_pred ------CCCCCc------------eeeeeeccHHHHHhhhccccceecCCcCCCccccCCHHHHHHHHhhhhccccchhh
Confidence 445554 344443332211222111110000 00011 1123567899999999
Q ss_pred HHhhhhcCcc------eee------eecCCCC----ceeeecccCCccccccccccccccCcc
Q 004627 222 RFATEVAGVQ------DLG------MLGRGSG----EEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 222 r~C~~i~g~~------~l~------~~~r~~~----~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
.+||.+.... +|. +..|+.. ..+.......+.|..|++|+++||.|-
T Consensus 152 s~CP~~~~~~~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i 214 (234)
T COG0479 152 AACPSIWWNPDFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGI 214 (234)
T ss_pred hhCCccccccCCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCCC
Confidence 9999643322 111 1233221 112222223457999999999999984
No 76
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=99.35 E-value=2.4e-13 Score=138.87 Aligned_cols=164 Identities=13% Similarity=0.177 Sum_probs=89.5
Q ss_pred EEEeCC-CChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEccchhHHHHHhHHHH
Q 004627 78 PLKIPK-GFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVME 156 (741)
Q Consensus 78 ~~~~~~-g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~~~~~~~~r~~~le 156 (741)
+|++.+ ++|||+++.++.-.-|.+-|- ..+.+|.||+|.|.||| ++++||.|.|.+--.-.|-.|
T Consensus 26 ~v~~~~~~~tvld~L~~ik~~d~~l~fr-~sCr~giCGsCa~~iNG--~~~LaC~t~~~~~~~~i~ieP----------- 91 (235)
T PRK12575 26 EIAPRAEDRMLLDVLGRVKAQDETLSYR-RSCREGICGSDAMNING--RNGLACLTNMQALPREIVLRP----------- 91 (235)
T ss_pred EecCCCCCCcHHHHHHHHHhcCCCeeee-ccCCCCCCCCCeeEECC--eEcchhhCcHhHcCCCEEEeE-----------
Confidence 344444 579999999987334655442 23477999999999999 567899999984211122222
Q ss_pred HHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccc------ccccccc--C---cccccccCCcccccchhHHHhh
Q 004627 157 FLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMK------RSVVDKN--L---GPLVKTVMTRCIQCTRCVRFAT 225 (741)
Q Consensus 157 ~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~------~~~~~~~--~---~p~i~~d~~rCI~C~rCvr~C~ 225 (741)
|.|+|. +.|+..+...-..++...+ ...+.+. . .-....+...||.||.|..+||
T Consensus 92 --l~~~pv------------ikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP 157 (235)
T PRK12575 92 --LPGLPV------------VRDLIVDMTDFFNQYHSIRPYLINDTVPPERERLQTPQEREQLDGLYECILCACCSTACP 157 (235)
T ss_pred --CCCCCc------------cccceecCHHHHHHHHhccCccccCCCCccccccCCHHHHHHHHhhhhCccccccccccc
Confidence 455555 4454443321111111111 0000000 0 0011135778999999999999
Q ss_pred hhcCc--ceeee-----------ecCCCCce--ee--ecccCCccccccccccccccCccc
Q 004627 226 EVAGV--QDLGM-----------LGRGSGEE--IG--TYVEKLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 226 ~i~g~--~~l~~-----------~~r~~~~~--i~--~~~~~~~~c~~cg~cv~vCP~gAl 269 (741)
.+... .-+|. .+|+.... +. ......+.|..||+|.++||.|--
T Consensus 158 ~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkgI~ 218 (235)
T PRK12575 158 SYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGLN 218 (235)
T ss_pred CccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCCCc
Confidence 64221 11211 12211000 10 011234579999999999998753
No 77
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=99.29 E-value=2.2e-12 Score=101.50 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=44.8
Q ss_pred eeeeeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccccccccCC
Q 004627 283 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK 336 (741)
Q Consensus 283 l~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr~~~~~l~ 336 (741)
+++++|+|++|+.||+|.+++++|+|++|+|++++|.|.|++|+||++.++.+|
T Consensus 1 mk~~~t~C~~C~~gC~i~~~v~~g~i~~v~g~~~~p~~~g~lC~KG~~~~~~v~ 54 (55)
T PF04879_consen 1 MKTVPTVCPYCSSGCGIDVYVKDGKIVKVEGDPDHPINQGRLCPKGRFGYQFVY 54 (55)
T ss_dssp SEEEEEE-SSCTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHCGGGCCC
T ss_pred CeEEeeECcCCcCCCcEEEEEecCceEEEECCCCCCCCCccCCHhHhHHHHhhc
Confidence 478999999999999999999999999999999999999999999999999876
No 78
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=99.21 E-value=1e-11 Score=120.67 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=72.8
Q ss_pred hhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCC
Q 004627 160 MNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRG 239 (741)
Q Consensus 160 ~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~ 239 (741)
.+|+. ...|..+|.|+||+++..+|++..+|....+... ....+.+.+|.++||+|++|+++||. +++....++
T Consensus 63 ~~~~~-i~~C~~~g~c~l~~~a~~~gv~~~~~~~~~~~~~-~~~~~~~~id~~~Ci~Cg~C~~aCp~----~ai~~~~~~ 136 (165)
T TIGR01944 63 AEGEA-INKCPPGGEAVILALAELLGVEPIPQPLDADAGT-IQPPMVALIDEDNCIGCTKCIQACPV----DAIVGAAKA 136 (165)
T ss_pred HcCCC-cCcCccccHHHHHHHHHHcCCCcccCCccccccc-cCCCceEEEECCcCCChhHHHHhCCc----cceEecCCC
Confidence 35666 6678999999999999999998887753222111 12345677899999999999999985 344433222
Q ss_pred CCceeeecccCCccccccccccccccCccccccc
Q 004627 240 SGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 240 ~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
. .. .....|..||.|+++||++||+..+
T Consensus 137 ~--~~----i~~~~C~~Cg~Cv~~CP~~AI~~~~ 164 (165)
T TIGR01944 137 M--HT----VIADECTGCDLCVEPCPTDCIEMIP 164 (165)
T ss_pred c--eE----eecccccChhHHHHhcCcCceEeeC
Confidence 1 11 1123599999999999999998653
No 79
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=99.12 E-value=2.4e-11 Score=117.32 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=58.4
Q ss_pred CCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCc
Q 004627 188 RGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVG 267 (741)
Q Consensus 188 ~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~g 267 (741)
+..|.+.+..+.....| .+..+.++||+|+.|+++||..+.........-+.......+..+...|++||.|+|+|||+
T Consensus 32 T~~YP~e~~~~~~rfRG-~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 32 TIEYPEEKIPLSPRFRG-RHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred hhhCccccCCCCCCccc-eeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchh
Confidence 45566666666655555 55578999999999999999744433322211112233444555666799999999999999
Q ss_pred cccccc
Q 004627 268 ALTSKP 273 (741)
Q Consensus 268 Al~~~~ 273 (741)
||...+
T Consensus 111 Al~~t~ 116 (172)
T COG1143 111 ALVLTP 116 (172)
T ss_pred hhcCCc
Confidence 998877
No 80
>PRK06991 ferredoxin; Provisional
Probab=99.12 E-value=3.2e-11 Score=125.26 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=77.4
Q ss_pred HhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecC
Q 004627 159 LMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGR 238 (741)
Q Consensus 159 l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r 238 (741)
+.+|..+|..|..+|.|.++.++..+|.....+.... ..+ ...+.+.+|.++||+||+|+++||. +.+.+...
T Consensus 35 Ia~Gea~~n~Cp~gG~~gi~~la~llG~~~~~~~p~~-~~~--~~~~~~~id~~~CigCg~Cv~aCP~----~AI~~~~~ 107 (270)
T PRK06991 35 IAAGEANYNRCPPGGAEGIARLAALLGKPVIPLDPAN-GVE--RPRAVAVIDEQLCIGCTLCMQACPV----DAIVGAPK 107 (270)
T ss_pred HHcCCCCCCcCCCCcHHHHHHHHHHhCCCcccccccc-ccc--cccceeEEccccCCCCcHHHHhCCH----hheecccc
Confidence 5578899999999999999999999998665443211 111 1234567899999999999999985 33433222
Q ss_pred CCCceeeecccCCccccccccccccccCccccccccccccccc
Q 004627 239 GSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNW 281 (741)
Q Consensus 239 ~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~w 281 (741)
+. .. .....|+.||.|+.+||++||...++......|
T Consensus 108 ~~--~~----v~~~~CigCg~Cv~vCP~~AI~~~~~~~~~~~~ 144 (270)
T PRK06991 108 QM--HT----VLADLCTGCDLCVPPCPVDCIDMVPVTGERTGW 144 (270)
T ss_pred cc--ee----eCHhhCCCchHHHhhCCcCCeEeecCcchhhHH
Confidence 11 11 112359999999999999999888765433333
No 81
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.98 E-value=2.3e-10 Score=135.08 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=58.2
Q ss_pred CCCCCcC--CCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeee
Q 004627 164 LDCPICD--QGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGM 235 (741)
Q Consensus 164 ~dC~~C~--~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~ 235 (741)
..|..|. ..++|+||++++.||++..+|...+.... ...+|+|.+|++|||+||||||+|.|+++.+++.+
T Consensus 567 ~~~~~~~C~~~~~C~Lq~~a~~~~~~~~~~~~~~~~~~-~~~~~~i~~D~~kCI~CgrCv~~C~ev~~~~~~~~ 639 (652)
T PRK12814 567 LRCLRCRCNAVDDCRLRDLATRYLPDTPCKEEEHEGFS-ITRNGDIRFEREKCVDCGICVRTLEEYGAEGNTDI 639 (652)
T ss_pred HHhhhhhcCCCCCChhHHHHHHhCCCcccccccccCcc-ccCCCCeEeccccccCchHHHHHHHHhcccchhhh
Confidence 3566665 78999999999999999999976433322 34688999999999999999999999999877754
No 82
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.91 E-value=2e-09 Score=92.43 Aligned_cols=65 Identities=35% Similarity=0.634 Sum_probs=56.7
Q ss_pred EEEE--CCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcC----------------CCcccccccC
Q 004627 71 EVFV--DGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK----------------SPKPVASCAM 132 (741)
Q Consensus 71 ~~~i--dg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~----------------~~~~~~aC~~ 132 (741)
+|.. +|+++++++|+|||++++++|+.+|+.|.+ |.|++|.|+|.. .++.++||++
T Consensus 2 ~~~~~~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~------g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~ 75 (84)
T cd00207 2 TINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRA------GACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQT 75 (84)
T ss_pred EEecCCCCEEEEECCCCcHHHHHHHcCCCcccCCCC------cCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeC
Confidence 4555 589999999999999999999999999965 799999999963 2467899999
Q ss_pred CCCCCCEEE
Q 004627 133 PALPGMKIK 141 (741)
Q Consensus 133 ~v~~gm~v~ 141 (741)
.+.++|.|.
T Consensus 76 ~~~~~i~v~ 84 (84)
T cd00207 76 RVTDGLVIE 84 (84)
T ss_pred eeCCCcEEC
Confidence 999999873
No 83
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=98.91 E-value=5.4e-10 Score=103.15 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=49.5
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+.+..+|||.|..|+++||.-+.+-+......| ......|..++..|++||+|++.|||+||.+.+
T Consensus 105 Ryp~geerCIACklCeavCPaqaitieae~r~dg-srRttrYdIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 105 RYPSGEERCIACKLCEAVCPAQAITIEAEERTDG-SRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred cCCCcchhhhhHHHHHHhCCcccceeeceecCCc-cccceeecccceeeeeecchhhhCCccceeccC
Confidence 4456789999999999999974444443332223 233444555667799999999999999999887
No 84
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=98.89 E-value=3.7e-10 Score=89.86 Aligned_cols=56 Identities=25% Similarity=0.492 Sum_probs=30.2
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccC-ccccc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPV-GALTS 271 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~-gAl~~ 271 (741)
+|.++||+||+|+++||+.+ ...+... ++....+. . ..|..||.|+.+||| +||+.
T Consensus 3 Id~~~Ci~Cg~C~~~Cp~~~-~~~i~~~-~~~~~~v~--~---~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 3 IDEDKCIGCGKCVRACPDGA-IDAIEVD-EGKKVPVN--P---DKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp E-TTT----SCCCHHCCCCS--S-ECCT-TTTSSECE------TT--S-SCCCCCSSSTTSEEE
T ss_pred ECcccccChhhHHhHcCccc-eeeEEec-CCeeEEec--c---ccCcCcCcccccCCCccCCCC
Confidence 58999999999999998621 1233222 22222222 2 359999999999998 99973
No 85
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=98.82 E-value=6.9e-09 Score=91.71 Aligned_cols=66 Identities=32% Similarity=0.540 Sum_probs=57.8
Q ss_pred CC--EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcC----------------CCcccccccCCCCC
Q 004627 75 DG--YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK----------------SPKPVASCAMPALP 136 (741)
Q Consensus 75 dg--~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~----------------~~~~~~aC~~~v~~ 136 (741)
+| +.+++++|+|||+|++++|+.||+.| ..|.|++|.|+|.. ..+.+++|++.+..
T Consensus 11 ~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C------~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~~~~ 84 (97)
T TIGR02008 11 DGGEETIECPDDQYILDAAEEAGIDLPYSC------RAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPTS 84 (97)
T ss_pred CCCEEEEEECCCCcHHHHHHHcCCCCCcCC------CCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCEECC
Confidence 88 99999999999999999999999999 45999999999931 13457999999999
Q ss_pred CCEEEccchh
Q 004627 137 GMKIKTDTPL 146 (741)
Q Consensus 137 gm~v~t~~~~ 146 (741)
++.|.|..++
T Consensus 85 di~v~~~~~~ 94 (97)
T TIGR02008 85 DCTIETHKEE 94 (97)
T ss_pred CeEEEecccc
Confidence 9999998764
No 86
>PF09326 DUF1982: Domain of unknown function (DUF1982); InterPro: IPR015405 This C-terminal domain is functionally uncharacterised and is found in various prokaryotic NADH dehydrogenases including NADH-quinone oxidoreductase, chain G. ; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process
Probab=98.77 E-value=2.6e-09 Score=80.96 Aligned_cols=31 Identities=52% Similarity=0.939 Sum_probs=27.8
Q ss_pred cccCCCCcccccccccccchhhhccHHHHHH
Q 004627 704 SEMDLTPFGSAVENFYMTDSITRASKTMAQC 734 (741)
Q Consensus 704 ~~~~~~~~~~~~~~fY~~d~i~r~s~~m~~c 734 (741)
..+.+.+|...+.|||+||+|||+|+||++|
T Consensus 19 ~~~~~~~~~~~i~dfY~Td~IsRAS~tMAeC 49 (49)
T PF09326_consen 19 GKLSDAPFQSPIKDFYMTDPISRASPTMAEC 49 (49)
T ss_pred CccccCccccccccccccchhhhhhHHhhcC
Confidence 3466678888999999999999999999999
No 87
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.74 E-value=3.8e-09 Score=83.04 Aligned_cols=53 Identities=23% Similarity=0.462 Sum_probs=31.4
Q ss_pred cccccchhHHHhhhhcCcceeeeecCCCCceeeecc--cCCccccccccccccccCccc
Q 004627 213 RCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV--EKLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 213 rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~--~~~~~c~~cg~cv~vCP~gAl 269 (741)
|||+||+|+++||. .++.+...+......... .....|.+||.|+++||++||
T Consensus 1 kCi~Cg~C~~~CP~----~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPV----GVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTT----T-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCc----cCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 79999999999986 444444443322222211 123369999999999999997
No 88
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=98.69 E-value=3.3e-08 Score=84.92 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=55.9
Q ss_pred cEEEEECCEEEEeCC-CChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-C------------CCcccccccCCC
Q 004627 69 AIEVFVDGYPLKIPK-GFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-K------------SPKPVASCAMPA 134 (741)
Q Consensus 69 ~v~~~idg~~~~~~~-g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~------------~~~~~~aC~~~v 134 (741)
+|+|..+|+.+++++ |+|||+|++++|+.+|+.| ..|.|+.|.+++. | .++.+++|++.+
T Consensus 3 ~v~~~~~~~~~~~~~~~~tlL~a~~~~gi~~p~~C------r~G~Cg~C~~~~~sG~v~~~~~~~~~~~~g~~L~C~~~p 76 (84)
T PRK10713 3 RVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQC------REGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRA 76 (84)
T ss_pred EEEEEeCCcEEEecCCCCcHHHHHHHcCCCCCCCC------CCeECCCCEeEEEeCeEecCCCccchhhCCEEEEeeCEE
Confidence 378899999999986 5999999999999999999 4699999999982 2 234578898888
Q ss_pred CCCCEEE
Q 004627 135 LPGMKIK 141 (741)
Q Consensus 135 ~~gm~v~ 141 (741)
..+++|.
T Consensus 77 ~sd~~ie 83 (84)
T PRK10713 77 KGDIEIE 83 (84)
T ss_pred CCCEEEe
Confidence 8777664
No 89
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=98.68 E-value=3e-08 Score=92.85 Aligned_cols=99 Identities=29% Similarity=0.477 Sum_probs=79.6
Q ss_pred cEEEEECCEEEE--eCCCChHHHHHH-HCCCCcccc-ccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEEc
Q 004627 69 AIEVFVDGYPLK--IPKGFTVLQACE-VAGVDIPRF-CYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIKT 142 (741)
Q Consensus 69 ~v~~~idg~~~~--~~~g~tvl~a~~-~~g~~ip~~-C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~t 142 (741)
.|+++|||++++ +.++++++++++ ..|..-+++ |++ |.|+.|.|.||| ++|.||.+++ -+|-+|.|
T Consensus 3 ~i~ltvNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~------g~CGACtVlvDG--~~v~SCl~~a~~~~G~~ItT 74 (156)
T COG2080 3 PITLTVNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGH------GQCGACTVLVDG--EAVNSCLTLAVQAEGAEITT 74 (156)
T ss_pred cEEEEECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCC------ccCCceEEEECC--eEehHHHHHHHHhCCCeEEE
Confidence 489999998765 689999999999 567666555 765 999999999999 7799999998 68999999
Q ss_pred cchhHHHHH--hHHHHHHHhhCCCCCCCcCCCCCC
Q 004627 143 DTPLAKKAR--EGVMEFLLMNHPLDCPICDQGGEC 175 (741)
Q Consensus 143 ~~~~~~~~r--~~~le~~l~~hp~dC~~C~~~gec 175 (741)
-....++.. ..+-+..+.+|-..|..|..|--+
T Consensus 75 iEGl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Im 109 (156)
T COG2080 75 IEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIM 109 (156)
T ss_pred eecccCCCCCcCHHHHHHHHcCCCcCCCCcHHHHH
Confidence 765542322 456667788899999999976433
No 90
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=98.67 E-value=9.6e-09 Score=101.45 Aligned_cols=85 Identities=19% Similarity=0.326 Sum_probs=51.3
Q ss_pred CCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCc
Q 004627 188 RGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVG 267 (741)
Q Consensus 188 ~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~g 267 (741)
+..|.+.+........+ .+.++.++||+|+.|+++||..+....+.............+..+...|.+||.|+++||++
T Consensus 39 T~~YP~~~~~~~~~~rG-~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~ 117 (183)
T TIGR00403 39 TIQYPYEKLIPSERFRG-RIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTN 117 (183)
T ss_pred cccCCCCCCCCCccccc-eEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCC
Confidence 44555554443333333 56789999999999999999743322211111000011111222334699999999999999
Q ss_pred cccccc
Q 004627 268 ALTSKP 273 (741)
Q Consensus 268 Al~~~~ 273 (741)
||....
T Consensus 118 AI~~~~ 123 (183)
T TIGR00403 118 CLSMTE 123 (183)
T ss_pred Ceeccc
Confidence 998654
No 91
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.66 E-value=6.7e-08 Score=96.12 Aligned_cols=107 Identities=20% Similarity=0.331 Sum_probs=81.5
Q ss_pred CcEEEEECCEEE--EeCCCChHHHHHHHC-CCC-ccccccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEE
Q 004627 68 DAIEVFVDGYPL--KIPKGFTVLQACEVA-GVD-IPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIK 141 (741)
Q Consensus 68 ~~v~~~idg~~~--~~~~g~tvl~a~~~~-g~~-ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~ 141 (741)
..|+|+|||+++ ++++++|||++++.. |.. ...-| ..|.|+.|.|.|+| +++.||.+++ .+|++|.
T Consensus 50 ~~i~~~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC------~~G~CGACTVlVdG--~~v~SCl~la~~~~G~~It 121 (217)
T PRK11433 50 SPVTLKVNGKTEQLEVDTRTTLLDALREHLHLTGTKKGC------DHGQCGACTVLVNG--RRLNACLTLAVMHQGAEIT 121 (217)
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCC------CCCCcCceEEEECC--EEeeeeeeehhhcCCCEEE
Confidence 348999999885 778999999999984 432 34457 45999999999999 6788999999 8999999
Q ss_pred ccchhHHHHH-hHHHHHHHhhCCCCCCCcCCCCCChhhhHHh
Q 004627 142 TDTPLAKKAR-EGVMEFLLMNHPLDCPICDQGGECDLQDQSM 182 (741)
Q Consensus 142 t~~~~~~~~r-~~~le~~l~~hp~dC~~C~~~gec~lq~~~~ 182 (741)
|-.......+ .-+-+.++..|-..|..|.-|--|.+..+-.
T Consensus 122 TiEGL~~~~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL~ 163 (217)
T PRK11433 122 TIEGLGSPDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLK 163 (217)
T ss_pred EeCCcCCCCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHH
Confidence 9655432222 2244566788999999999887676665543
No 92
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.65 E-value=1e-08 Score=89.58 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=45.1
Q ss_pred ccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCCC----------cee---eecccCCccccccccccccccCc
Q 004627 201 KNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSG----------EEI---GTYVEKLMTSELSGNVIDICPVG 267 (741)
Q Consensus 201 ~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~----------~~i---~~~~~~~~~c~~cg~cv~vCP~g 267 (741)
+...+.+.+|+++||+|++|+++||. +++.+..++.. ... .....+...|.+||.|+++||++
T Consensus 10 ~~~~~~~~i~~~~Ci~C~~Cv~~CP~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~ 85 (91)
T TIGR02936 10 WTPQFVTSIDQEKCIGCGRCYKVCGR----DVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKK 85 (91)
T ss_pred cCcceeEEECHhHCCCcchHHHHcCh----hhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHh
Confidence 44556777899999999999999986 33333221100 000 01112334699999999999999
Q ss_pred ccccc
Q 004627 268 ALTSK 272 (741)
Q Consensus 268 Al~~~ 272 (741)
||+..
T Consensus 86 AI~~~ 90 (91)
T TIGR02936 86 CQTHA 90 (91)
T ss_pred HEecC
Confidence 99754
No 93
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.63 E-value=3e-08 Score=97.84 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=58.3
Q ss_pred HhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCC--CceeeecccCCccccccc
Q 004627 181 SMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGS--GEEIGTYVEKLMTSELSG 258 (741)
Q Consensus 181 ~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~--~~~i~~~~~~~~~c~~cg 258 (741)
....|..+..|...+..+.....| .+.+|.++||+|++|+++||. +++.+..... ...+.. ....|.+||
T Consensus 8 ~~~~g~~T~~yP~~~~~~p~~~rG-~~~~d~~~Ci~Cg~Cv~aCP~----~Ai~~~~~~~~~~~~~~~---~~~~C~~Cg 79 (181)
T PRK08222 8 IMRAGTATVKYPFAPLEVSPGFRG-KPDLMPSQCIACGACTCACPA----NALTIQTDDQQNSRTWQL---YLGRCIYCG 79 (181)
T ss_pred HhcCCCccccCCCcccCCCCCccC-ceEeChhhCcchhHHHHhCCc----cceEcccccccCccceee---ccCcCcCCC
Confidence 345677788887665555555555 456799999999999999986 4444322111 011111 223699999
Q ss_pred cccccccCccccccc
Q 004627 259 NVIDICPVGALTSKP 273 (741)
Q Consensus 259 ~cv~vCP~gAl~~~~ 273 (741)
.|+++||++||....
T Consensus 80 ~C~~~CPt~AI~~~~ 94 (181)
T PRK08222 80 RCEEVCPTRAIQLTN 94 (181)
T ss_pred CcccccCcCeEEecc
Confidence 999999999998665
No 94
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.63 E-value=3.5e-08 Score=97.55 Aligned_cols=91 Identities=18% Similarity=0.289 Sum_probs=60.6
Q ss_pred hhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccc
Q 004627 177 LQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSEL 256 (741)
Q Consensus 177 lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~ 256 (741)
+.......|..+..|+..+..+.....+ .+.+|.++|++|++|+++||. +++.+...+..... .+..+...|.+
T Consensus 4 ~~~~~~~~g~~T~~yP~~~~~~~~~~rg-~p~~d~~~C~~C~~Cv~~CP~----~ai~~~~~~~~~~~-~~~i~~~~C~~ 77 (180)
T PRK12387 4 LIKKVIKTGTATSSYPLEPIAVDKNFRG-KPEYNPQQCIGCAACVNACPS----NALTVETDLATGEL-AWEFNLGRCIF 77 (180)
T ss_pred HHHHHHhcCCccccCCCCCCCCCCCCCC-ceEEChhhCcChhHHHHhcCc----cCeEeeccccCCcc-cceeccccCcC
Confidence 4455667788888887665555443333 566799999999999999986 34443322110011 11122345999
Q ss_pred cccccccccCccccccc
Q 004627 257 SGNVIDICPVGALTSKP 273 (741)
Q Consensus 257 cg~cv~vCP~gAl~~~~ 273 (741)
||.|+++||++||+...
T Consensus 78 Cg~C~~vCP~~AI~~~~ 94 (180)
T PRK12387 78 CGRCEEVCPTAAIKLSQ 94 (180)
T ss_pred ccchhhhcCcCceEccC
Confidence 99999999999998654
No 95
>CHL00134 petF ferredoxin; Validated
Probab=98.61 E-value=7.6e-08 Score=85.32 Aligned_cols=65 Identities=28% Similarity=0.520 Sum_probs=55.6
Q ss_pred CCE--EEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcC----------------CCcccccccCCCCC
Q 004627 75 DGY--PLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK----------------SPKPVASCAMPALP 136 (741)
Q Consensus 75 dg~--~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~----------------~~~~~~aC~~~v~~ 136 (741)
+|+ .+++++|+|||+|++++||.||+.| ..|.|+.|.|+|.. ..+.+++|++.+..
T Consensus 13 ~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C------~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~ 86 (99)
T CHL00134 13 EGIDVTIDCPDDVYILDAAEEQGIDLPYSC------RAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPTS 86 (99)
T ss_pred CCCeEEEEECCCCcHHHHHHHcCCCCCcCC------CCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEeeCEECC
Confidence 665 5999999999999999999999999 46999999999921 12457999999999
Q ss_pred CCEEEccch
Q 004627 137 GMKIKTDTP 145 (741)
Q Consensus 137 gm~v~t~~~ 145 (741)
++.|.+..+
T Consensus 87 d~~i~~~~~ 95 (99)
T CHL00134 87 DCTILTHQE 95 (99)
T ss_pred CeEEEeccc
Confidence 999988655
No 96
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.60 E-value=9.8e-09 Score=79.76 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=26.9
Q ss_pred cccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcc
Q 004627 213 RCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 213 rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
|||+||+|+.+||. ++|.+..............+...|.+||+|+.+||+||
T Consensus 1 ~C~~C~~C~~~CP~----~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPT----GAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TT----HHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCc----cccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 79999999999986 44555443221111112223456999999999999997
No 97
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.60 E-value=2.7e-08 Score=91.66 Aligned_cols=62 Identities=19% Similarity=0.433 Sum_probs=44.7
Q ss_pred CcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 203 LGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 203 ~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
..+.+.++.++|++|++|+++||. +++.+...+. .+... ...|..||.|+++||++||....
T Consensus 33 ~~g~i~i~~~~Ci~C~~C~~~CP~----~ai~~~~~~~--~~~i~---~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 33 FRGKILYDVDKCVGCRMCVTVCPA----GVFVYLPEIR--KVALW---TGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred ccceEEECcccCcCcccHHHHCCc----cceEcccccc--ceEec---CCcCcChhhhHHhCCcCcEEecc
Confidence 345778899999999999999986 3443332111 12222 23599999999999999998765
No 98
>PTZ00038 ferredoxin; Provisional
Probab=98.57 E-value=9.9e-08 Score=93.35 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=59.6
Q ss_pred EEEE-ECC-EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-C---------------CCccccccc
Q 004627 70 IEVF-VDG-YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-K---------------SPKPVASCA 131 (741)
Q Consensus 70 v~~~-idg-~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~---------------~~~~~~aC~ 131 (741)
|+|. .+| +.+++++|+|||+|++++||.+|+.|. .|.|+.|.|+|. | ..+.+++|+
T Consensus 98 Vt~~~~~g~~~~~v~~geTILdAae~aGI~lp~sCr------~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCq 171 (191)
T PTZ00038 98 ITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCR------GGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCT 171 (191)
T ss_pred EEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCcCCC------CccCCCCEeEEeecccccCccccCCHHHhcCCEEEEee
Confidence 5553 334 899999999999999999999999995 399999999982 1 123579999
Q ss_pred CCCCCCCEEEccchh
Q 004627 132 MPALPGMKIKTDTPL 146 (741)
Q Consensus 132 ~~v~~gm~v~t~~~~ 146 (741)
+.+..++.|.|..+.
T Consensus 172 a~p~sDi~Ie~p~e~ 186 (191)
T PTZ00038 172 CYPKSDCTIETHKED 186 (191)
T ss_pred CEECCCeEEecCChH
Confidence 999999999998875
No 99
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.54 E-value=5.9e-08 Score=94.49 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=50.4
Q ss_pred CCCCcccccccccccccCcccccccCC-----cccccchhHHHhhhhcCcceeeeecCC---CCceeeecccCCcccccc
Q 004627 186 SDRGRFTEMKRSVVDKNLGPLVKTVMT-----RCIQCTRCVRFATEVAGVQDLGMLGRG---SGEEIGTYVEKLMTSELS 257 (741)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~p~i~~d~~-----rCI~C~rCvr~C~~i~g~~~l~~~~r~---~~~~i~~~~~~~~~c~~c 257 (741)
..+.+|...+...... ....+.++.+ +||+|++|+++||.. ++.+.... .......+......|.+|
T Consensus 28 ~~t~~yp~~~~~~~~~-~~g~~~l~~~~~~~~~Ci~C~~C~~~CP~~----ai~~~~~~~~~g~~~~~~~~i~~~~C~~C 102 (164)
T PRK05888 28 KVTIQYPEEKLPLSPR-FRGRHALRRDPNGEERCIACKLCAAICPAD----AITIEAAEREDGRRRTTRYDINFGRCIFC 102 (164)
T ss_pred CcccCCCCCCCCCCCC-cCCEEeecCCCCCCccCCcccChHHHcCcc----ccccccccCCCCcccceeeecCCCcCccc
Confidence 3445565544333332 2345666777 999999999999862 22222110 101111122234569999
Q ss_pred ccccccccCccccccc
Q 004627 258 GNVIDICPVGALTSKP 273 (741)
Q Consensus 258 g~cv~vCP~gAl~~~~ 273 (741)
|+|+++||++||....
T Consensus 103 g~Cv~~CP~~Ai~~~~ 118 (164)
T PRK05888 103 GFCEEACPTDAIVETP 118 (164)
T ss_pred CcchhhcCcCcceecC
Confidence 9999999999998765
No 100
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=98.53 E-value=1e-07 Score=86.20 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=59.8
Q ss_pred EEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcC----------------------CCccccc
Q 004627 72 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK----------------------SPKPVAS 129 (741)
Q Consensus 72 ~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~----------------------~~~~~~a 129 (741)
|.-+|+.+++.+|+|||+|++++|+.+|+.|. ..|.|++|.|+|.. .++.++|
T Consensus 11 ~~p~~~~~~~~~g~tLL~a~~~~gi~i~~~Cg-----G~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLa 85 (110)
T TIGR02007 11 LCPEGAVVEAKPGETILDVALDNGIEIEHACE-----KSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLS 85 (110)
T ss_pred cCCCCeEEEECCCChHHHHHHHcCCCccccCC-----CCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEe
Confidence 34578999999999999999999999999993 56999999999932 1235799
Q ss_pred ccCCCC-CCCEEEccchhHHHHH
Q 004627 130 CAMPAL-PGMKIKTDTPLAKKAR 151 (741)
Q Consensus 130 C~~~v~-~gm~v~t~~~~~~~~r 151 (741)
|++.+. +++.|..........|
T Consensus 86 Cq~~~~~~dl~v~~~~~~~~~~~ 108 (110)
T TIGR02007 86 CQAVVADEDLVVEIPKYTINHAR 108 (110)
T ss_pred eeEEEcCCCEEEEECchhhhhhh
Confidence 999887 6888888765544443
No 101
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=98.52 E-value=2.3e-07 Score=87.84 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=76.0
Q ss_pred cEEEEECCEEEEe--CCCChHHHHHHHC-CCCccc-cccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEEc
Q 004627 69 AIEVFVDGYPLKI--PKGFTVLQACEVA-GVDIPR-FCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIKT 142 (741)
Q Consensus 69 ~v~~~idg~~~~~--~~g~tvl~a~~~~-g~~ip~-~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~t 142 (741)
.|+|+|||+++++ .+++++++.++.. |..-.+ .| ..|.|+.|.|.||| +++.||.+++ -+|.+|.|
T Consensus 3 ~i~f~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC------~~G~CGACtVlvdG--~~v~SCl~~~~~~~G~~v~T 74 (151)
T TIGR03198 3 QFRFTVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSC------GIGRCGACSVLIDG--KLANACLTMAYQADGHEITT 74 (151)
T ss_pred cEEEEECCEEEEeecCCCcHHHHHHHhccCCCCCCCCC------CCCcCCccEEEECC--cEEechHHHHHHhcCCEEEe
Confidence 3899999998866 4889999999973 765544 36 56999999999999 5899999999 68999999
Q ss_pred cchhHHHHHhHHHHHHHhhCCCCCCCcCCCC
Q 004627 143 DTPLAKKAREGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 143 ~~~~~~~~r~~~le~~l~~hp~dC~~C~~~g 173 (741)
-.......-.-+-+.+..+|-..|..|.-|-
T Consensus 75 iEgl~~~~l~pvQ~af~~~~a~QCGfCtpG~ 105 (151)
T TIGR03198 75 IEGIAENELDPCQTAFLEEGGFQCGYCTPGM 105 (151)
T ss_pred cCCcCCCCCCHHHHHHHHcCCCcCCCCCccH
Confidence 6554321113345566788999999999875
No 102
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=98.52 E-value=3.2e-07 Score=87.03 Aligned_cols=103 Identities=23% Similarity=0.407 Sum_probs=78.3
Q ss_pred cEEEEECCEEEEe--CCCChHHHHHHHCCCCcccc-ccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEEcc
Q 004627 69 AIEVFVDGYPLKI--PKGFTVLQACEVAGVDIPRF-CYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIKTD 143 (741)
Q Consensus 69 ~v~~~idg~~~~~--~~g~tvl~a~~~~g~~ip~~-C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~t~ 143 (741)
.++|+|||+++++ ++++++|+.++..|..=.++ | ..|.|+.|.|.||| +++.||.+++ -+|-.|.|-
T Consensus 8 ~i~~~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC------~~G~CGACtVlvdg--~~v~SCl~~a~~~~G~~V~Ti 79 (159)
T PRK09908 8 TIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGC------CVGECGACTVLVDG--TAIDSCLYLAAWAEGKEIRTL 79 (159)
T ss_pred eEEEEECCEEEEEecCCCCcHHHHHHHcCCCCCCCCc------CCCCCCCcEEEECC--cEeehhHhhHHHhCCCEEEee
Confidence 3899999988655 69999999999877644333 6 56999999999999 6899999998 579999986
Q ss_pred chhHHHHH-hHHHHHHHhhCCCCCCCcCCCCCChhhh
Q 004627 144 TPLAKKAR-EGVMEFLLMNHPLDCPICDQGGECDLQD 179 (741)
Q Consensus 144 ~~~~~~~r-~~~le~~l~~hp~dC~~C~~~gec~lq~ 179 (741)
.......+ ..+-+.++.+|-..|..|.-|--..+..
T Consensus 80 EGl~~~~~l~pvQ~Af~~~~a~QCGyCtPG~ims~~a 116 (159)
T PRK09908 80 EGEAKGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTA 116 (159)
T ss_pred cCCCCCCCCCHHHHHHHHcCCCcCCCCCccHHHHHHH
Confidence 44332112 3355667788999999999875333333
No 103
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=98.50 E-value=2.2e-07 Score=84.82 Aligned_cols=71 Identities=23% Similarity=0.434 Sum_probs=57.7
Q ss_pred EEE-EECC--EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEE-cC-----------------------
Q 004627 70 IEV-FVDG--YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEV-EK----------------------- 122 (741)
Q Consensus 70 v~~-~idg--~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v-~~----------------------- 122 (741)
|+| ..+| +++++++|+|||+|++++|+++|..|. +.|.|+.|.|.| ++
T Consensus 3 V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~Cg-----G~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~ 77 (117)
T PLN02593 3 VTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACE-----GSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGL 77 (117)
T ss_pred EEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCC-----CcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCC
Confidence 454 4677 678889999999999999999999993 579999999999 21
Q ss_pred CCcccccccCCCC---CCCEEEccch
Q 004627 123 SPKPVASCAMPAL---PGMKIKTDTP 145 (741)
Q Consensus 123 ~~~~~~aC~~~v~---~gm~v~t~~~ 145 (741)
.++.++||++.|. +||+|.....
T Consensus 78 ~~~sRLaCQ~~v~~~~~~~~v~ip~~ 103 (117)
T PLN02593 78 TETSRLGCQVIAKPELDGMRLALPAA 103 (117)
T ss_pred CCCeEecceeEeecCCCCEEEEcCch
Confidence 1244699999998 6889988655
No 104
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.48 E-value=6.6e-08 Score=82.55 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=41.8
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecC-CCC-ceeeecccCCccccccccccccccCccccccccc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGR-GSG-EEIGTYVEKLMTSELSGNVIDICPVGALTSKPFA 275 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r-~~~-~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~ 275 (741)
++.++|++|++|+++||. +++.+... +.. ..+. ...+...|..||.|+++||++||+.+.|.
T Consensus 6 ~~~~~C~~C~~C~~~CP~----~~i~~~~~~~~~~~~~~-~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~ 69 (81)
T PLN00071 6 KIYDTCIGCTQCVRACPT----DVLEMIPWDGCKAKQIA-SAPRTEDCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred EcCCcCcChhHHHHHCCc----cceeeeccccccccccc-CcCCCCcCcChhhHHhhcCCccceEeeee
Confidence 467899999999999995 33433321 111 1111 11233469999999999999999987653
No 105
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=98.48 E-value=3.6e-07 Score=85.81 Aligned_cols=96 Identities=22% Similarity=0.418 Sum_probs=74.0
Q ss_pred EEEEECCEEEE--eCCCChHHHHHHH-CCCCcccc-ccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEEcc
Q 004627 70 IEVFVDGYPLK--IPKGFTVLQACEV-AGVDIPRF-CYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIKTD 143 (741)
Q Consensus 70 v~~~idg~~~~--~~~g~tvl~a~~~-~g~~ip~~-C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~t~ 143 (741)
++|+|||++++ +++++++|++++. .|..=.++ | ..|.|+.|.|.||| +++.||.+++ .+|.+|.|-
T Consensus 2 i~~~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC------~~G~CGACtVlvdg--~~v~SCl~~~~~~~G~~V~Ti 73 (148)
T TIGR03193 2 LRLTVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGC------DGGECGACTVLVDG--RPRLACSTLAHRVAGRKVETV 73 (148)
T ss_pred EEEEECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCC------CCCCCCCCEEEECC--eEeeccHhhHhhcCCCcEEEe
Confidence 78999998866 5799999999997 36544333 5 55999999999999 6899999999 679999986
Q ss_pred chhHHHHH-hHHHHHHHhhCCCCCCCcCCCC
Q 004627 144 TPLAKKAR-EGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 144 ~~~~~~~r-~~~le~~l~~hp~dC~~C~~~g 173 (741)
.......+ ..+-+.+...|-..|..|.-|-
T Consensus 74 Egl~~~~~l~pvq~af~~~~a~QCGfCtPG~ 104 (148)
T TIGR03193 74 EGLATNGRLSRLQQAFHERLGTQCGFCTPGM 104 (148)
T ss_pred CCCCCCCCCCHHHHHHHHcCCCcCCCCCccH
Confidence 54432111 2244556788999999999875
No 106
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=98.48 E-value=1.4e-07 Score=79.86 Aligned_cols=44 Identities=39% Similarity=0.714 Sum_probs=39.4
Q ss_pred EEECCE--EEEeCCCCh-HHHHHHHC-CCCccccccCCCCCCccccCccEEEEc
Q 004627 72 VFVDGY--PLKIPKGFT-VLQACEVA-GVDIPRFCYHSRLSIAGNCRMCLVEVE 121 (741)
Q Consensus 72 ~~idg~--~~~~~~g~t-vl~a~~~~-g~~ip~~C~~~~l~~~G~C~~C~V~v~ 121 (741)
|+|||+ ++++++|+| ||+|++++ |+.+|+.|.. |.|++|.|+|.
T Consensus 1 i~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~------g~Cg~C~v~v~ 48 (78)
T PF00111_consen 1 ITINGKGVTVEVPPGETLLLDALERAGGIGIPYSCGG------GGCGTCRVRVL 48 (78)
T ss_dssp EETTTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSS------SSSSTTEEEEE
T ss_pred CEECCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCC------CccCCcEEEEe
Confidence 688998 677789999 99999999 9999999954 77999999985
No 107
>PLN03136 Ferredoxin; Provisional
Probab=98.47 E-value=2.5e-07 Score=87.36 Aligned_cols=64 Identities=30% Similarity=0.444 Sum_probs=56.2
Q ss_pred EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-C---------------CCcccccccCCCCCCCEE
Q 004627 77 YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-K---------------SPKPVASCAMPALPGMKI 140 (741)
Q Consensus 77 ~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~---------------~~~~~~aC~~~v~~gm~v 140 (741)
+++++++|+|||+|++++|+.+|+.| ..|.|+.|.++|. | .++.+++|++.+..+++|
T Consensus 66 ~~~~~~~g~tILdAa~~~Gi~lp~sC------r~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~sD~~I 139 (148)
T PLN03136 66 QEVECEEDVYVLDAAEEAGIDLPYSC------RAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVI 139 (148)
T ss_pred EEEEeCCCCcHHHHHHHcCCCCCcCC------CCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECCCcEE
Confidence 68999999999999999999999999 4699999999992 1 134679999999999999
Q ss_pred Eccchh
Q 004627 141 KTDTPL 146 (741)
Q Consensus 141 ~t~~~~ 146 (741)
.+..++
T Consensus 140 e~~~e~ 145 (148)
T PLN03136 140 ETHKEE 145 (148)
T ss_pred ecCChh
Confidence 998764
No 108
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=98.43 E-value=1.3e-07 Score=92.30 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=42.4
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+.++.++||+|+.|+++||..+..................+..+...|..||.|+++||++||....
T Consensus 53 ~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~ 120 (167)
T CHL00014 53 RIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTE 120 (167)
T ss_pred eEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCC
Confidence 55678999999999999999633221111100000011111222334599999999999999997654
No 109
>CHL00065 psaC photosystem I subunit VII
Probab=98.40 E-value=1.1e-07 Score=81.10 Aligned_cols=62 Identities=21% Similarity=0.418 Sum_probs=41.0
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCC--CceeeecccCCccccccccccccccCccccccccc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGS--GEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFA 275 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~--~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~ 275 (741)
.+.++||+|++|+++||. +.+.+..... ...+. ...+...|..||.|+++||++||+.+.|.
T Consensus 6 ~~~~~Ci~Cg~C~~~CP~----~~i~~~~~~~~~~~~~~-~~~~~~~C~~C~~C~~~CP~~Ai~~~~~~ 69 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPT----DVLEMIPWDGCKAKQIA-SAPRTEDCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred CccccCCChhHHHHHCCc----cchhheecccccccccc-ccCCCCcCCChhhhhhhcCccccEEEEEe
Confidence 467899999999999995 2333222110 01111 11122359999999999999999988764
No 110
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.40 E-value=1.3e-07 Score=80.57 Aligned_cols=64 Identities=20% Similarity=0.375 Sum_probs=43.3
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCC--CceeeecccCCccccccccccccccCccccccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGS--GEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFA 275 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~--~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~ 275 (741)
+.++.++||+|++|+++||. ..+.+..++. ...+. .......|.+||+|+++||++||..+.|.
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~----~~i~~~~~~~~~~~~~~-~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 68 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPT----DVLEMVPWDGCKAGQIA-SAPRTEDCVGCKRCESACPTDFLSVRVYL 68 (80)
T ss_pred ceecCCcCcCcchHHHHCCc----cceeeeccccccccccc-CcCCCCcCcChhHHHHhcCcccCEEEEec
Confidence 34578999999999999985 3344332211 01111 11223469999999999999999987654
No 111
>PRK06273 ferredoxin; Provisional
Probab=98.37 E-value=1.5e-07 Score=90.97 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=41.4
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCCce------eeecccCCccccccccccccccCcccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEE------IGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~------i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
+-..++.++|++|+.|+.+||. +++.+...+.... -..+......|.+||.|+++||++||...
T Consensus 42 ~~~~id~~~CigCg~C~~aCP~----~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~~ 111 (165)
T PRK06273 42 LPKKVFEELCIGCGGCANVCPT----KAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFNE 111 (165)
T ss_pred CCCeECchhCcChhHHHHhcCc----cceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheecc
Confidence 3445689999999999999986 3333322110000 00111233469999999999999999554
No 112
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.36 E-value=8.8e-08 Score=74.36 Aligned_cols=51 Identities=18% Similarity=0.435 Sum_probs=20.3
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCcccccccccccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICP 265 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP 265 (741)
+.+|.++||+|++|+++||.. ....+.. .+. .+.. ...+|.+||.|+++||
T Consensus 2 i~id~~~C~~C~~C~~~CP~~-~~~~~~~--~~~--~~~~---~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPAD-NAIAIDD--GEK--KVEI---DPERCIGCGACVEVCP 52 (52)
T ss_dssp ----TT------TTGGG-TT------EEE---SS--SEEE----TTT--TTSHHHHH-T
T ss_pred CccCcccCcCCcChHHHccch-hHHHhhc--cCC--CeEe---CcccccccChhhhhCc
Confidence 567999999999999999961 1111111 111 1122 3345999999999999
No 113
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=98.35 E-value=1.3e-07 Score=89.80 Aligned_cols=102 Identities=16% Similarity=0.318 Sum_probs=63.8
Q ss_pred cCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecc
Q 004627 169 CDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV 248 (741)
Q Consensus 169 C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~ 248 (741)
|.-||+=-+.+++...|.+...-.. .....+....+..+|++.||+|+.|+++||. +++....+..++.+..
T Consensus 74 C~PGG~~vi~kI~elLgvep~~~~~--~~~~~~~~~~va~i~e~~ciGCtkCiqaCpv----dAivg~~~~mhtv~~d-- 145 (198)
T COG2878 74 CAPGGEAVIRKIAELLGVEPPPADG--SEHGEEQARMVALIDEANCIGCTKCIQACPV----DAIVGATKAMHTVIAD-- 145 (198)
T ss_pred CCCCcHHHHHHHHHHhcCCCCCcch--hhhhccccceeeEecchhccccHHHHHhCCh----hhhhccchhHHHHHHH--
Confidence 4455555556666666632222100 1111111223445799999999999999986 4444444443333221
Q ss_pred cCCccccccccccccccCcccccccccccccccc
Q 004627 249 EKLMTSELSGNVIDICPVGALTSKPFAFKARNWE 282 (741)
Q Consensus 249 ~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~we 282 (741)
-|+.|++|+.-|||++|...+-..+.+.|.
T Consensus 146 ----lCTGC~lCva~CPtdci~m~~~~~~~~~~k 175 (198)
T COG2878 146 ----LCTGCDLCVAPCPTDCIEMQPVAETPDRWK 175 (198)
T ss_pred ----HhcCCCcccCCCCCCceeeeecccchhhcc
Confidence 299999999999999999999777666664
No 114
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=98.34 E-value=1.6e-07 Score=103.74 Aligned_cols=67 Identities=37% Similarity=0.616 Sum_probs=47.4
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeec---ccCCccccccccccccccCccccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTY---VEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~---~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
+.+|.++||+||+|+++||..+....+....++....+... ..+...|..||.|+++||++||+...
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~~ 71 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEKD 71 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhhc
Confidence 45799999999999999998766554544444433222211 11223599999999999999998763
No 115
>PRK05713 hypothetical protein; Provisional
Probab=98.32 E-value=6.3e-07 Score=96.73 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=57.9
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-CC---------------CcccccccCC
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-KS---------------PKPVASCAMP 133 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~~---------------~~~~~aC~~~ 133 (741)
-+|.++|+++++++|+|||+|++++||.+|+.|. .|.|+.|.|+|. |. .+.+++|++.
T Consensus 2 ~~~~~~~~~~~~~~g~tlL~a~~~~gi~~~~~C~------~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~ 75 (312)
T PRK05713 2 PELRVGERRWSVPAGSNLLDALNAAGVAVPYSCR------AGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCR 75 (312)
T ss_pred CcEecCCeEEEECCCCcHHHHHHHcCCCCCcCCC------CcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECE
Confidence 4688999999999999999999999999999993 599999999982 21 2346889998
Q ss_pred CCCCCEEEcc
Q 004627 134 ALPGMKIKTD 143 (741)
Q Consensus 134 v~~gm~v~t~ 143 (741)
+..++.|...
T Consensus 76 ~~~d~~i~~~ 85 (312)
T PRK05713 76 VVGDLRVEVF 85 (312)
T ss_pred ECCceEEEec
Confidence 8888888864
No 116
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=98.32 E-value=3.7e-07 Score=84.34 Aligned_cols=59 Identities=20% Similarity=0.424 Sum_probs=38.1
Q ss_pred CcccccchhHHHhhhhcCcceeeeec---CCCCceeeecccCCccccccccccccccCcccccccc
Q 004627 212 TRCIQCTRCVRFATEVAGVQDLGMLG---RGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPF 274 (741)
Q Consensus 212 ~rCI~C~rCvr~C~~i~g~~~l~~~~---r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~ 274 (741)
++||+|++|+++||..+ +.+.. .+....+.........|..||.|+++||++||....+
T Consensus 43 ~~Ci~C~~C~~~CP~~a----i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADA----IRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred CcCcCcchhhhhcCHhH----eeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccce
Confidence 99999999999999622 22211 1111111111122345999999999999999987653
No 117
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.31 E-value=2.9e-07 Score=78.57 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=40.5
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeec-CC-CCceeeecccCCccccccccccccccCccccccccc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLG-RG-SGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFA 275 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~-r~-~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~ 275 (741)
...++||+|++|+++||. ..+.... .+ ....+. .......|..||.|+++||++||+.+.|.
T Consensus 6 ~~~~~Ci~C~~C~~~CP~----~~i~~~~~~~~~~~~~~-~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 69 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPL----DVLEMVPWDGCKAGQIA-SSPRTEDCVGCKRCETACPTDFLSIRVYL 69 (81)
T ss_pred cccccCCCcchHHHHCCc----cceecccccccccCccc-ccCCCCcCCChhhhhhhcCCCceEEEEEe
Confidence 346999999999999995 2222211 01 101111 11223469999999999999999977653
No 118
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=98.29 E-value=1.4e-06 Score=81.68 Aligned_cols=73 Identities=18% Similarity=0.428 Sum_probs=58.9
Q ss_pred CcEEEEECC-----EEEEeCCCChHHHHHHHC-CCCccccccCCCCCCccccCccEEEEcC-------------------
Q 004627 68 DAIEVFVDG-----YPLKIPKGFTVLQACEVA-GVDIPRFCYHSRLSIAGNCRMCLVEVEK------------------- 122 (741)
Q Consensus 68 ~~v~~~idg-----~~~~~~~g~tvl~a~~~~-g~~ip~~C~~~~l~~~G~C~~C~V~v~~------------------- 122 (741)
..|+|+|++ +++++++|.|||+++..+ |+.|+..| ++.|.|+.|.|.|..
T Consensus 34 g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~C-----GG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~ 108 (143)
T PTZ00490 34 GKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTC-----NGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAK 108 (143)
T ss_pred CcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccC-----CCCCEeCCCEEEECCCccccCCCCChHHHHHhhc
Confidence 348877754 799999999999999995 79999999 578999999999943
Q ss_pred ----CCcccccccCCCCC---CCEEEccch
Q 004627 123 ----SPKPVASCAMPALP---GMKIKTDTP 145 (741)
Q Consensus 123 ----~~~~~~aC~~~v~~---gm~v~t~~~ 145 (741)
.+..++|||..|.+ |++|.....
T Consensus 109 ~~~~~~gsRLaCQi~v~~~ldgl~V~vp~~ 138 (143)
T PTZ00490 109 ALDVKETSRLACQVDLTPEMDGLEVELPSY 138 (143)
T ss_pred cccCCCCcEEeeeEEEecCCCCEEEEeCcc
Confidence 12346999999985 558887544
No 119
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=98.28 E-value=9.3e-07 Score=89.55 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=62.5
Q ss_pred EEEEECC---EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcC------------------CCcccc
Q 004627 70 IEVFVDG---YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK------------------SPKPVA 128 (741)
Q Consensus 70 v~~~idg---~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~------------------~~~~~~ 128 (741)
++|.||| ++.++++|.++|.++...||.||..| ++.|.|+.|.|.|.+ ..+.++
T Consensus 37 ~ti~IN~d~e~~~t~~aG~kLL~~L~~~gifi~SaC-----GGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RL 111 (410)
T COG2871 37 ITIKINGDPEKTKTVPAGGKLLGALASSGIFISSAC-----GGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRL 111 (410)
T ss_pred eEEEeCCChhhceecCCchhHHHHHHhCCcccccCC-----CCCccccccEEEEecCCCccCcchhhhhhhhhhhccceE
Confidence 8999999 77999999999999999999999999 578999999999942 134578
Q ss_pred cccCCCCCCCEEEccch
Q 004627 129 SCAMPALPGMKIKTDTP 145 (741)
Q Consensus 129 aC~~~v~~gm~v~t~~~ 145 (741)
|||++|+.+|.++...+
T Consensus 112 sCQ~~Vk~dm~levpEe 128 (410)
T COG2871 112 SCQVNVKHDMDLEVPEE 128 (410)
T ss_pred EEEecccccceeechHH
Confidence 99999999999987543
No 120
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.26 E-value=9.3e-08 Score=102.35 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=53.0
Q ss_pred hCCCCCCCcCC---CCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeec
Q 004627 161 NHPLDCPICDQ---GGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 237 (741)
Q Consensus 161 ~hp~dC~~C~~---~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~ 237 (741)
.++..|..|+. ..-|..+.+... .....+.+|.++||+|+.|+.+||. +++.+..
T Consensus 107 ~~~~~C~hC~~p~Cv~aCP~gAi~k~------------------~~~g~V~id~dkCigCg~Cv~aCP~----gai~~~~ 164 (328)
T PRK10882 107 YIKKQCMHCVDPNCVSVCPVSALTKD------------------PKTGIVHYDKDVCTGCRYCMVACPF----NVPKYDY 164 (328)
T ss_pred cccccCCCcCchhhHhhCCCCCEEec------------------ccCCcccCCHHHcCcccHHHHhCCc----cceeccc
Confidence 46788998974 356765443210 0113456788999999999999985 3333221
Q ss_pred CCCCceeeecccCCcccccccc-------------ccccccCcccccc
Q 004627 238 RGSGEEIGTYVEKLMTSELSGN-------------VIDICPVGALTSK 272 (741)
Q Consensus 238 r~~~~~i~~~~~~~~~c~~cg~-------------cv~vCP~gAl~~~ 272 (741)
.... .....|++|+. |+++||+|||+.-
T Consensus 165 ~~~~-------~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG 205 (328)
T PRK10882 165 NNPF-------GAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFG 205 (328)
T ss_pred cccc-------cceeecccccccchhhhhcCCCChhhhhccccceEec
Confidence 1110 12234999998 9999999999643
No 121
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.25 E-value=1.7e-06 Score=107.15 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=61.9
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccc--cCCC---CCCccccCccEEEEcCC----CcccccccCCCCCCCE
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFC--YHSR---LSIAGNCRMCLVEVEKS----PKPVASCAMPALPGMK 139 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C--~~~~---l~~~G~C~~C~V~v~~~----~~~~~aC~~~v~~gm~ 139 (741)
.|+|++||+++++.+|+||..|+..+|+..-+.- ||.. ++.+|.|..|+|+|+|. |+ ++||+|+|.+||+
T Consensus 12 ~~~~~~dg~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~~~~-~~ac~~~~~~gm~ 90 (985)
T TIGR01372 12 PLRFTFDGKSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQREPN-TRATTQELYDGLV 90 (985)
T ss_pred eEEEEECCEEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCCCCC-ccceeEEcccCCE
Confidence 4999999999999999999999999998763322 2322 33567799999999974 44 8899999999999
Q ss_pred EEccc
Q 004627 140 IKTDT 144 (741)
Q Consensus 140 v~t~~ 144 (741)
|.++.
T Consensus 91 ~~~~~ 95 (985)
T TIGR01372 91 ATSQN 95 (985)
T ss_pred Eeccc
Confidence 99975
No 122
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.25 E-value=5.5e-07 Score=80.56 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=42.0
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCC--ceeeecccCCccccccccccccccCccccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSG--EEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~--~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
..+.+|.++||+|++|+++||.. ++.+...+.. ... ........|..||.|+++||++||....
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~----ai~~~~~~~~~~~~~-~~~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAG----VLAMRIDPHAVLGKM-IKVVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred CCeEECcccccCCcchhhhcChh----hhccccccccccCce-eeEeCCccCCCcCcchhhCChhhEEEec
Confidence 45567999999999999999862 2322221110 000 0111223599999999999999997554
No 123
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.24 E-value=4e-07 Score=81.54 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=42.0
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
....+|.++|++|++|+++||. .++.....+ .... +...|..||.|+++||.+||....
T Consensus 44 ~~p~~d~~~Ci~C~~C~~~CP~----~ai~~~~~~---~~~i---d~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 44 FMPEFNRDKCVRCYLCYIYCPE----PAIYLDEEG---YPVF---DYDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EEEEEChhHCcChhhHHhhCCH----hhEEecCCC---cEEE---CchhCCCcCchhhhcCcCcEEEec
Confidence 3446799999999999999986 334332222 1111 223599999999999999997654
No 124
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=98.21 E-value=2.7e-06 Score=75.78 Aligned_cols=68 Identities=28% Similarity=0.412 Sum_probs=53.1
Q ss_pred EEEEECC--EE-EEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC---------------------Cc
Q 004627 70 IEVFVDG--YP-LKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS---------------------PK 125 (741)
Q Consensus 70 v~~~idg--~~-~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~---------------------~~ 125 (741)
..+.++| .. ..++.|+|||++++++||+||+.| ..|.|..|.|+|... +.
T Consensus 5 ~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i~~~C------~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~ 78 (102)
T COG0633 5 AFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYAC------RGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGN 78 (102)
T ss_pred EEEeccCCcceEEeccCCcHHHHHHHHCCCcceecC------CCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCC
Confidence 4455664 33 444559999999999999999999 458999999999432 23
Q ss_pred ccccccCCCCCCCEEEcc
Q 004627 126 PVASCAMPALPGMKIKTD 143 (741)
Q Consensus 126 ~~~aC~~~v~~gm~v~t~ 143 (741)
.+++|++.+..+..+.+.
T Consensus 79 ~rL~Cq~~~~~d~~i~~~ 96 (102)
T COG0633 79 SRLSCQCRVKGDLDIEVV 96 (102)
T ss_pred cEEeeeeEECCCcceEEE
Confidence 578999999999887654
No 125
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.21 E-value=6.2e-07 Score=80.44 Aligned_cols=59 Identities=19% Similarity=0.354 Sum_probs=41.3
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
+...+|.++||+|++|+++||. .++.+...+ .... +...|..||.|+++||++||....
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~----~ai~~~~~~---~~~i---d~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPE----PAIYIKEDG---YVAI---DYDYCKGCGICANECPTKAITMVK 102 (105)
T ss_pred eeEEECcccCccccchhhhCCH----hheEecCCC---cEEe---CchhCcCcchhhhhcCcCcEEecc
Confidence 4556799999999999999986 233322111 1111 223499999999999999997543
No 126
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.20 E-value=5.1e-07 Score=74.29 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=40.9
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+|.++|++|+.|+.+||. +.+.+..+.....+.. .+-.|..||.|+.+||++||....
T Consensus 4 ~Id~~~C~~c~~C~~~CP~----~~~~~~~~~~~~~~~~---~~e~C~~C~~C~~~CP~~aI~~~~ 62 (68)
T COG1146 4 VIDYDKCIGCGICVEVCPA----GVFDLGEDEGGKPVVA---RPEECIDCGLCELACPVGAIKVDI 62 (68)
T ss_pred EECchhcCCCChheeccCh----hhEEeccccCcceeEe---ccccCccchhhhhhCCcceEEEec
Confidence 4688999999999999986 3333322101112222 233499999999999999997654
No 127
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.20 E-value=4.6e-07 Score=84.78 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=38.2
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
.+.+|.++||+|++|+++||.. ++.. ++.. .+... ...|..||.|+++||++|+.
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~----ai~~--~~~~-~~~i~---~~~C~~Cg~Cv~vCP~~a~~ 107 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDA----AILS--RDKK-LKGVD---YSHCKGCGVCVEVCPTNPKS 107 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHh----heEe--cCCc-eEEeC---cCcCcChhHHHHHCCcCceE
Confidence 3457899999999999999962 2222 1111 11111 23499999999999999964
No 128
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.18 E-value=1.4e-06 Score=77.54 Aligned_cols=66 Identities=17% Similarity=0.413 Sum_probs=43.8
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeee
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGT 286 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~ 286 (741)
++.++|++|++|+++||. +.+.....+. ..+.. +...|.+||.|+++||++||..++. +.|.++..
T Consensus 31 ~~~~~C~~C~~C~~~CP~----~~i~~~~~g~-~~~~i---~~~~C~~Cg~C~~~CP~~Ai~~~~~----~~~~~~~~ 96 (101)
T TIGR00402 31 LFSAVCTRCGECASACEN----NILQLGQQGQ-PTVEF---DNAECDFCGKCAEACPTNAFHPRFP----GDWLLRPQ 96 (101)
T ss_pred cCcCcCcChhHHHHHcCc----ccceeccCCc-eeeEe---cCccCcCccChhhHCCccccCcCCC----CCceEEee
Confidence 567899999999999986 3333322221 11111 2235999999999999999986542 45655543
No 129
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=98.17 E-value=2.9e-06 Score=94.90 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=60.3
Q ss_pred cEEEEECC---EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC------------------Cccc
Q 004627 69 AIEVFVDG---YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS------------------PKPV 127 (741)
Q Consensus 69 ~v~~~idg---~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~------------------~~~~ 127 (741)
+|+|+++| +++++++|+|||+|++++|+.+|+.|. ..|.|+.|.|+|... .+.+
T Consensus 31 ~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~-----g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~r 105 (405)
T TIGR01941 31 DITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACG-----GGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWR 105 (405)
T ss_pred cEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCC-----CccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcE
Confidence 38999998 999999999999999999999999994 348999999999421 1246
Q ss_pred ccccCCCCCCCEEEccc
Q 004627 128 ASCAMPALPGMKIKTDT 144 (741)
Q Consensus 128 ~aC~~~v~~gm~v~t~~ 144 (741)
+||++.+..++.|....
T Consensus 106 LaCq~~~~~d~~i~~~~ 122 (405)
T TIGR01941 106 LSCQVKVKQDMSIEIPE 122 (405)
T ss_pred EEeeCEECCCEEEEECc
Confidence 89999999999888753
No 130
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=98.17 E-value=3.2e-06 Score=94.65 Aligned_cols=73 Identities=25% Similarity=0.449 Sum_probs=60.6
Q ss_pred CCCcEEEEECC---EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-CC-----------------C
Q 004627 66 PEDAIEVFVDG---YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-KS-----------------P 124 (741)
Q Consensus 66 ~~~~v~~~idg---~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~~-----------------~ 124 (741)
+...++|+++| +++++++|+|||+|++++|+.+|+.|. ..|.|+.|.|+|. |. .
T Consensus 32 ~~~~~~i~~~~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~-----g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~ 106 (409)
T PRK05464 32 PSGDVTIKINGDPEKTITVPAGGKLLGALASNGIFLSSACG-----GGGSCGQCRVKVKEGGGDILPTELSHISKREAKE 106 (409)
T ss_pred cCccEEEEEcCCCcEEEEECCCchHHHHHHHcCCCcccCCC-----CccEeCCCEEEEecCCcCCChhhhhhcCHhhccC
Confidence 33448899987 999999999999999999999999993 3599999999983 21 2
Q ss_pred cccccccCCCCCCCEEEcc
Q 004627 125 KPVASCAMPALPGMKIKTD 143 (741)
Q Consensus 125 ~~~~aC~~~v~~gm~v~t~ 143 (741)
+.++||++.+..++.|...
T Consensus 107 g~rLaCq~~~~~d~~ie~~ 125 (409)
T PRK05464 107 GWRLSCQVKVKQDMKIEVP 125 (409)
T ss_pred CcEEEeeCEECCCEEEEEC
Confidence 4468999999888888774
No 131
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.15 E-value=8.9e-07 Score=79.34 Aligned_cols=63 Identities=19% Similarity=0.434 Sum_probs=48.6
Q ss_pred EECCEEEEeCCCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCC
Q 004627 73 FVDGYPLKIPKGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGM 138 (741)
Q Consensus 73 ~idg~~~~~~~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm 138 (741)
..+-.+|++++|+|||+|+.++..++ |++-|. ..+.+|.||.|.|.||| ++++||.|++.+..
T Consensus 17 ~~~~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr-~sCr~giCGsCam~ING--~~~LAC~t~v~~~~ 80 (110)
T PF13085_consen 17 YYQEYEVPVEPGMTVLDALNYIKEEQDPSLAFR-YSCRSGICGSCAMRING--RPRLACKTQVDDLI 80 (110)
T ss_dssp EEEEEEEEGGSTSBHHHHHHHHHHHT-TT--B---SSSSSSSSTTEEEETT--EEEEGGGSBGGGCT
T ss_pred eEEEEEecCCCCCcHHHHHHHHHhccCCCeEEE-ecCCCCCCCCCEEEECC--ceecceeeEchhcc
Confidence 35567888999999999999986664 444432 22366999999999999 66889999998876
No 132
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=98.15 E-value=2.8e-06 Score=92.78 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=57.6
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-C-----------------CCcccccc
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-K-----------------SPKPVASC 130 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~-----------------~~~~~~aC 130 (741)
+|+|..+|+++++++|+|||+|++++|+.+|+.|. .|.|+.|.|++. | ..+.+++|
T Consensus 4 ~v~~~~~~~~~~~~~g~tlL~a~~~~gi~~~~~C~------~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C 77 (339)
T PRK07609 4 QVTLQPSGRQFTAEPDETILDAALRQGIHLPYGCK------NGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTC 77 (339)
T ss_pred EEEEecCCeEEEeCCCCcHHHHHHHcCCCCCCCCC------CeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEe
Confidence 48888999999999999999999999999999993 599999999972 2 12346788
Q ss_pred cCCCCCCCEEEccc
Q 004627 131 AMPALPGMKIKTDT 144 (741)
Q Consensus 131 ~~~v~~gm~v~t~~ 144 (741)
++.+..+++|....
T Consensus 78 ~~~~~~d~~i~~~~ 91 (339)
T PRK07609 78 CAKPLSDLVLEARE 91 (339)
T ss_pred eCEECCCEEEEecc
Confidence 88888777776543
No 133
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=98.13 E-value=4.9e-07 Score=76.09 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=40.4
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
...|.++||.|..|.-+||| .++...+.+....|.+. .|.+||-|+++||+.||...
T Consensus 30 Pv~d~~kCi~C~~C~~yCPe----~~i~~~~~~~~~~idYd-----yCKGCGICa~vCP~kaI~Mv 86 (91)
T COG1144 30 PVVDEDKCINCKLCWLYCPE----PAILEEEGGYKVRIDYD-----YCKGCGICANVCPVKAIEMV 86 (91)
T ss_pred eEEcccccccCceeEEECCc----hheeeccCCccceeEcc-----cccCceechhhCChhheEeE
Confidence 34588999999999999998 33333222221113332 39999999999999999754
No 134
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.11 E-value=1.3e-06 Score=84.98 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=49.9
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeee--
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGT-- 286 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~-- 286 (741)
++.++||+||.|+++||. +++.....+. ..+... ...|++||.|+++||++||..... +.|+....
T Consensus 31 ~~~~~C~~Cg~C~~aCp~----~~i~~~~~~~-~~~~~~---~~~C~~C~~C~~~CP~~ai~~~~~----~~~~~~~~~~ 98 (163)
T PRK10194 31 HFLTHCTRCDACINACEN----NILQRGAGGY-PSVNFK---NNECSFCYACAQACPESLFSPRHT----RAWDLQFTIG 98 (163)
T ss_pred HHhhhCcChhHHHHHcCh----hhcccCCCCc-eeeeec---CCCCCCchhhHhhCcchheecccc----cccceeeeec
Confidence 457899999999999997 3333222111 112222 234999999999999999986543 23443321
Q ss_pred -------eecCCCCCCCCCc
Q 004627 287 -------ETIDVTDAVGSNI 299 (741)
Q Consensus 287 -------~siC~~C~~gC~i 299 (741)
...|..|...|..
T Consensus 99 ~~C~~~~~~~C~~C~~~CP~ 118 (163)
T PRK10194 99 DACLAYQSVECRRCQDSCEP 118 (163)
T ss_pred ccCCCccCCCcCcchhhCCH
Confidence 1356667777754
No 135
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=98.07 E-value=1.1e-06 Score=94.64 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=42.0
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeee--cCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGML--GRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~--~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
...+|.++||+|++|+.+||+.+....+... .++..........+...|..||.|+++||++||+...
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 3456899999999999999974432221110 0111000111111224599999999999999998653
No 136
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.04 E-value=2.3e-06 Score=72.45 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=39.7
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
.+.++.++|++|++|+++||. .++.....+ ...+ ....|..||.|+++||++||+..
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~----~ai~~~~~~-~~~i-----~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPE----GAIQEDEGG-FVGI-----DYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCc----cceEecCCC-cEEe-----cCccCcCccchhhhCCccccEec
Confidence 345689999999999999985 233332111 1111 12359999999999999998643
No 137
>PRK13984 putative oxidoreductase; Provisional
Probab=98.02 E-value=3.1e-06 Score=99.74 Aligned_cols=80 Identities=19% Similarity=0.384 Sum_probs=51.4
Q ss_pred CCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCC-----CceeeecccCCccccccccccc
Q 004627 188 RGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGS-----GEEIGTYVEKLMTSELSGNVID 262 (741)
Q Consensus 188 ~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~-----~~~i~~~~~~~~~c~~cg~cv~ 262 (741)
+..|+..|+...+.+.+ ++.+|.++||+|++|+++||. .++...+... ......+......|..|+.|++
T Consensus 22 ~~~~~~~~~~~~~~~~~-~~~~d~~~Ci~C~~C~~~Cp~----~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~ 96 (604)
T PRK13984 22 TIKVPNVKREAAERYRG-FHINDWEKCIGCGTCSKICPT----DAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVD 96 (604)
T ss_pred ceECCCCCCCCCccccC-ccccChhhCcCccchhhhCCc----cceEeeccccccccccccccccccCcccCcCcchHHh
Confidence 45566666666666666 555799999999999999985 2333222100 0000011122235999999999
Q ss_pred cccCcccccc
Q 004627 263 ICPVGALTSK 272 (741)
Q Consensus 263 vCP~gAl~~~ 272 (741)
+||++||+..
T Consensus 97 ~Cp~~Ai~~~ 106 (604)
T PRK13984 97 ICTTGSLKMT 106 (604)
T ss_pred hCCcCcEEec
Confidence 9999998764
No 138
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.01 E-value=1.8e-06 Score=76.28 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=41.7
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeeecCCC-CceeeecccCCccccccccccccccCccccccccc
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGS-GEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFA 275 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~-~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~ 275 (741)
..+.++||+||.|+.+||+. ++.+..+.. ..++... ...|..||.|+.+||++|+......
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~----ai~~~~~~~~~~~~~~~---~~~C~~C~~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTG----AIELIEEGLLLPEVVID---PDLCVLCGACLKVCPVDALSIAEEL 86 (99)
T ss_pred EeCccccCCCCCchhhCCHH----HhhcccccCccceEEEc---cccCccccchHhhCCcCCeehhhcc
Confidence 56889999999999999983 333322110 0122222 2349999999999999997766543
No 139
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=98.00 E-value=8.2e-06 Score=89.15 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=53.7
Q ss_pred EEEEE---CCEE--EEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-CC-----------------Ccc
Q 004627 70 IEVFV---DGYP--LKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-KS-----------------PKP 126 (741)
Q Consensus 70 v~~~i---dg~~--~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~~-----------------~~~ 126 (741)
.+|+| ||+. +++++|+|||+|++++|+.+|+.|. .|.|+.|.|+|. |. .+.
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~------~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~ 76 (340)
T PRK11872 3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCR------EGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRK 76 (340)
T ss_pred eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCC------CeECCCCEEEEEeCccccCccccccCCHHHHhCCe
Confidence 35666 8877 6789999999999999999999993 599999999982 21 234
Q ss_pred cccccCCCCCCCEEEc
Q 004627 127 VASCAMPALPGMKIKT 142 (741)
Q Consensus 127 ~~aC~~~v~~gm~v~t 142 (741)
+++|++.+..++.|.-
T Consensus 77 ~L~C~~~~~~d~~i~~ 92 (340)
T PRK11872 77 MLACQTRVKSDAAFYF 92 (340)
T ss_pred EEEeeCEECCceEEEe
Confidence 6888888888887764
No 140
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.97 E-value=3.2e-06 Score=91.16 Aligned_cols=58 Identities=26% Similarity=0.422 Sum_probs=41.4
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+|.++|++|++|+++||..+ ..++.+.+ ..+.. +...|..||+|+.+||++||..+.
T Consensus 165 ~~d~~~C~~Cg~C~~~Cp~~a-~~ai~~~~----~~~~i---d~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 165 QYDADRCIGCGACVKVCKKKA-VGALSFEN----YKVVR---DHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred ceeCccCCcchHHHHhcChhh-cCceeccC----CeEEe---CCCcCcCcchhhhhCCHhhcccCc
Confidence 468899999999999999633 23333321 12222 233599999999999999997654
No 141
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.97 E-value=2.3e-06 Score=91.64 Aligned_cols=61 Identities=21% Similarity=0.440 Sum_probs=41.9
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeec-CCCCceeeecccCCccccccccccccccCcccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG-RGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~-r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
..+.+|.++||+|++|+.+||.-+ +.+.. .+....+ ..++..|..||.|+.+||++||...
T Consensus 41 ~~~~~~~~~C~~C~~C~~~Cp~~a----~~~~~~~~~~~~~---~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 41 PELLFKENRCLGCGKCVEVCPAGT----ARLSELADGRNRI---IIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred ceEEEccccCCCCchhhhhCcccc----cccccccCCCcce---eechhhcCchhHhhccCcHhHHhhh
Confidence 466679999999999999999732 22110 1111111 1233459999999999999999764
No 142
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=97.94 E-value=2.9e-06 Score=78.91 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=41.9
Q ss_pred cccCCcccccc-----hhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccc
Q 004627 208 KTVMTRCIQCT-----RCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPF 274 (741)
Q Consensus 208 ~~d~~rCI~C~-----rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~ 274 (741)
.++.++|++|+ +|+++||. .++.+...+. . .+......|..||.|+.+||++||....+
T Consensus 4 ~v~~~~C~gC~~~~~~~Cv~~CP~----~ai~~~~~~~--~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 67 (132)
T TIGR02060 4 FVYPTKCDGCKAGEKTACVYICPN----DLMHLDTEIM--K--AYNIEPDMCWECYSCVKACPQGAIDVRGY 67 (132)
T ss_pred EEccccccCccCCchhcCHhhcCc----cceEecCCCc--e--eeecCchhCccHHHHHHhCCcCceEEECc
Confidence 46899999999 99999985 3444332111 1 11122345999999999999999987654
No 143
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.92 E-value=2.9e-06 Score=89.43 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=38.3
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
+|.++|++|++|+++||+.+. +....++.+... .....+|..||+|+++||++||+-.
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i---~~~~~~~~~~~~---~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQV---LRPPLKGKQSPS---QVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred CCcccCcccCCcCCcCCCcce---ecccccCCCccc---eeCcccCcChhHHHhhcCccceeec
Confidence 789999999999999996221 110011111110 0122359999999999999999754
No 144
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=97.90 E-value=3.2e-06 Score=88.32 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=36.9
Q ss_pred cCCcccccchhHHHhhhhcCcceeeeecCC-CCceeeecccCCccccccccccccccCccccc
Q 004627 210 VMTRCIQCTRCVRFATEVAGVQDLGMLGRG-SGEEIGTYVEKLMTSELSGNVIDICPVGALTS 271 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~-~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~ 271 (741)
|.++|++|++|+++||+.+ .+....++ ....+ +..+|..||+|+++||++|++-
T Consensus 199 ~~~~C~~C~~C~~vCP~~~---vl~~~~~~~~~~~i-----~~~~C~~Cg~Cv~~CP~~Ai~f 253 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQ---VLRMPLKKGGSTLV-----LSGDCTLCGRCIDVCHEDVLGF 253 (255)
T ss_pred ccccCeEcCCccCcCCCCc---eeeccccCCCceEe-----ccccccchhHHHHhCCcccccc
Confidence 4899999999999999621 12221111 11111 2235999999999999999864
No 145
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=97.89 E-value=3.7e-06 Score=93.95 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=46.1
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccce
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWEL 283 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel 283 (741)
+.+|.++||+|++|+.+||. .++...++ .. .. ....|..|+.|+++||++||+........++|.+
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~----~ai~~~~~---~~-~i---~~~~C~~C~~C~~~CP~~AI~~~~~~~~~~~~tv 70 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPI----DAITHDDR---NY-VV---KADVCNGCMACVSPCPTGAIDNWRTMLRAKAYSL 70 (411)
T ss_pred eeeCcccCcCccchhhhCCc----ccEeccCC---ce-Ee---CcccCcCHHHHHhhcCcccceecccccccccccH
Confidence 45689999999999999985 33333221 11 11 2234999999999999999996665555555543
No 146
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.88 E-value=4.7e-06 Score=103.64 Aligned_cols=69 Identities=28% Similarity=0.381 Sum_probs=43.0
Q ss_pred ccccCCcccccchhHHHhhhhcCcce----------------eeeecCCCCceeeecccCCccccccccccccccCc--c
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQD----------------LGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVG--A 268 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~----------------l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~g--A 268 (741)
+.++.++||+|++|+++||..+.... +...+++...........+.+|..||+|+++||++ |
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~A 757 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKA 757 (1165)
T ss_pred ceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCcc
Confidence 45689999999999999997332211 00001111111001122345699999999999996 8
Q ss_pred ccccccc
Q 004627 269 LTSKPFA 275 (741)
Q Consensus 269 l~~~~~~ 275 (741)
|..+++.
T Consensus 758 l~m~~~~ 764 (1165)
T TIGR02176 758 LVMQPLA 764 (1165)
T ss_pred ccccchh
Confidence 8888764
No 147
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=97.86 E-value=1.6e-05 Score=86.53 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=65.4
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-C---------------CCcccccccCC
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-K---------------SPKPVASCAMP 133 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~---------------~~~~~~aC~~~ 133 (741)
|+|.--||..+ ++|.|||+|++++|+.|-+.| ++.|.|+-|.|.|. | ..+..+||+++
T Consensus 4 v~f~psgkr~~-~~g~~il~aar~~gv~i~s~c-----ggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~ 77 (614)
T COG3894 4 VTFMPSGKRGE-DEGTTILDAARRLGVYIRSVC-----GGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQ 77 (614)
T ss_pred eEeecCCCcCC-CCCchHHHHHHhhCceEeeec-----CCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehh
Confidence 88899999999 999999999999999999999 58899999999993 1 13567899999
Q ss_pred CCCCCEEEccchhHHHHHh
Q 004627 134 ALPGMKIKTDTPLAKKARE 152 (741)
Q Consensus 134 v~~gm~v~t~~~~~~~~r~ 152 (741)
|..+.+|....+...+.|+
T Consensus 78 v~gd~~i~ip~es~l~~q~ 96 (614)
T COG3894 78 VLGDLVIFIPPESRLERQK 96 (614)
T ss_pred hcCceEEEcCchhhHHHHH
Confidence 9988888887766655443
No 148
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=97.85 E-value=2.4e-05 Score=94.75 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=79.2
Q ss_pred EEEECCEEEEeCCCChHHHHHHH-CCCCcc-ccccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEEccchh
Q 004627 71 EVFVDGYPLKIPKGFTVLQACEV-AGVDIP-RFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIKTDTPL 146 (741)
Q Consensus 71 ~~~idg~~~~~~~g~tvl~a~~~-~g~~ip-~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~t~~~~ 146 (741)
+|+|||++++++++++||+.++. .|..=. .-| ..|.|+.|.|.||| +++.||.+++ -+|.+|.|-...
T Consensus 2 ~~~~ng~~~~~~~~~~l~~~lr~~~~~~~~k~gc------~~g~cgactv~~dg--~~~~sc~~~~~~~~g~~i~T~egl 73 (848)
T TIGR03311 2 EFIVNGREVDVNEEKKLLEFLREDLRLTGVKNGC------GEGACGACTVIVNG--KAVRACRFTTAKLAGKEITTVEGL 73 (848)
T ss_pred EEEECCEEeeCCCCCcHHHHHHHhcCCCcCCCCC------CCCCCCCcEEEECC--eEEehhhhhHHhcCCCEEEecCCC
Confidence 68999999999999999999997 576433 347 55999999999999 7899999999 579999996544
Q ss_pred HHHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhH
Q 004627 147 AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQ 180 (741)
Q Consensus 147 ~~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~ 180 (741)
.......+-+.++.+|-..|..|.-|--..+..+
T Consensus 74 ~~~~~~~~q~a~~~~~~~qcG~ctpg~~~~~~~l 107 (848)
T TIGR03311 74 TEREKDVYAWAFAKAGAVQCGFCIPGMVISAKAL 107 (848)
T ss_pred CCCCCCHHHHHHHHcCCCcCCCCchhHHHHHHHH
Confidence 3211234556777889999999998764444443
No 149
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=97.82 E-value=2.3e-05 Score=85.35 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=52.6
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-CC---------------CcccccccCC
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-KS---------------PKPVASCAMP 133 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~~---------------~~~~~aC~~~ 133 (741)
|++.-.|+.+++++|+|||+|++++|+++|+.| ..|.|+.|.|.+. |. .+.+++|++.
T Consensus 251 v~~~~~~~~~~~~~~~~lL~~~~~~gi~~~~~C------~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~ 324 (332)
T PRK10684 251 FTKLQPAREFYAPVGTTLLEALESNKVPVVAAC------RAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCH 324 (332)
T ss_pred EEEecCCEEEEeCCCChHHHHHHHcCCCccCCC------CCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCE
Confidence 556668899999999999999999999999999 4699999999983 21 2346788887
Q ss_pred CCCCCEE
Q 004627 134 ALPGMKI 140 (741)
Q Consensus 134 v~~gm~v 140 (741)
+..+.+|
T Consensus 325 ~~~d~~i 331 (332)
T PRK10684 325 PQGDLVL 331 (332)
T ss_pred ECCCeEE
Confidence 7766544
No 150
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=97.82 E-value=2.5e-05 Score=95.35 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=77.3
Q ss_pred cEEEEECCEEEEe--CCCChHHHHHHHCCCCcccc-ccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEEcc
Q 004627 69 AIEVFVDGYPLKI--PKGFTVLQACEVAGVDIPRF-CYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIKTD 143 (741)
Q Consensus 69 ~v~~~idg~~~~~--~~g~tvl~a~~~~g~~ip~~-C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~t~ 143 (741)
.++|+|||+++++ +++++||+.|+..|..-.+. | +..|.|+.|.|.||| +++.||.+++ -+|.+|.|-
T Consensus 2 ~i~~~vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~-----c~~g~CGaCtv~~dg--~~v~sC~~~~~~~~g~~i~Tv 74 (956)
T PRK09800 2 IIHFTLNGAPQELTVNPGENVQKLLFNMGMHSVRNSD-----DGFGFAGSDAIIFNG--NIVNASLLIAAQLEKADIRTA 74 (956)
T ss_pred eEEEEECCEEEEEecCCCCCHHHHHHHCCCCccccCC-----CCcccCCCCEEEECC--eEEeHHHHHHHHcCCCEEEec
Confidence 3899999988665 59999999999988877765 3 255999999999999 7899999998 589999996
Q ss_pred chhHHHHH-hHHHHHHHhhCCCCCCCcCCCC
Q 004627 144 TPLAKKAR-EGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 144 ~~~~~~~r-~~~le~~l~~hp~dC~~C~~~g 173 (741)
........ ..+-+.++.+|-..|..|.-|-
T Consensus 75 egl~~~~~~~~~q~af~~~~~~QCG~CtpG~ 105 (956)
T PRK09800 75 ESLGKWNELSLVQQAMVDVGVVQSGYNDPAA 105 (956)
T ss_pred CCcCCCCCCCHHHHHHHHcCCCcCCCChHHH
Confidence 44322111 2344567888999999998764
No 151
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=97.79 E-value=1e-05 Score=82.73 Aligned_cols=58 Identities=22% Similarity=0.388 Sum_probs=42.8
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPF 274 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~ 274 (741)
..+|.++|+.||.|.++|+. +++.+...+ .+...+..|+.||.|.-+||.+||..++.
T Consensus 64 p~i~~e~C~~CG~C~~vC~f----~Ai~~~~~~------~~~~~~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 64 PEIDPEKCIRCGKCAEVCRF----GAIVVLPGG------KPVLNPDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred cccChhhccccCcHHHhCCC----CeEEEcCCC------ceecCcccccCcccceeeCCCcccccccc
Confidence 34588999999999999976 444332211 12223445999999999999999998874
No 152
>PRK07118 ferredoxin; Validated
Probab=97.78 E-value=7.9e-06 Score=86.21 Aligned_cols=63 Identities=16% Similarity=0.340 Sum_probs=40.2
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeeccc---------CCccccccccccccccCccccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVE---------KLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~---------~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
+.+|.++|++|++|+++||. +++.+..+.....+..... ....|..|+.|+++||++||..++
T Consensus 163 ~~id~~~C~~Cg~Cv~aCP~----~ai~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 163 PVVDEDKCTGCGACVKACPR----NVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred EEEChhhCcChhHHHHhcCc----cceeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence 44578889999999999975 4454444433222221100 123488888999999998887654
No 153
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.77 E-value=7.6e-06 Score=92.03 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=43.7
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccC-ccccccccccc
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPV-GALTSKPFAFK 277 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~-gAl~~~~~~~~ 277 (741)
.+|.++|++|++|+++||+. ...++.+...+.. .... ....|..||.|+++||+ +||+...+...
T Consensus 338 ~~~~~~C~~C~~C~~~Cp~~-~~~ai~~~~~~~~-~~~i---~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~~ 403 (420)
T PRK08318 338 RIDQDKCIGCGRCYIACEDT-SHQAIEWDEDGTR-TPEV---IEEECVGCNLCAHVCPVEGCITMGEVKFG 403 (420)
T ss_pred EECHHHCCCCCcccccCCCc-chhheeeccCCCc-eEEe---chhhCcccchHHhhCCCCCCEEEeccCCC
Confidence 46889999999999999852 1133433221211 1111 22349999999999999 99988776543
No 154
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=97.76 E-value=7.4e-07 Score=70.48 Aligned_cols=56 Identities=20% Similarity=0.494 Sum_probs=25.4
Q ss_pred cCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCc
Q 004627 210 VMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVG 267 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~g 267 (741)
|.++||.||.|+.+||-...........++..... .......|..||+|.++||+|
T Consensus 1 d~~~Ci~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~--~~~~~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 1 DLSKCIRCGACTSVCPVYRNTGRFSHPPRDRRSAV--LREEAWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HHHC--S-SHHHHCSHHHHHHHHHHTSTTS--HHH--HHHHHGG-----HHHHH-TT-
T ss_pred CHHHccCccChHHHChhhhcccccccCcchhHHHh--hcccccCCcCcCCccCcCccc
Confidence 46799999999999996433332222222221111 011115699999999999987
No 155
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=97.75 E-value=6.9e-06 Score=84.73 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=40.1
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+|.++|++|++|+.+||. +++...+ + . .. .....|..||.|+++||++||....
T Consensus 144 ~id~~~C~~C~~C~~~CP~----~ai~~~~-~-~--~~---i~~~~C~~Cg~C~~~CP~~AI~~~~ 198 (234)
T TIGR02700 144 MIDRKRCKGCGICVDACPR----SAIDMVD-G-K--AF---IRLLKCVGCGKCKEACPYNAIHGGL 198 (234)
T ss_pred EEChhHCcCcchHHHhCCc----ccEEecC-C-c--eE---EchhhCCccchHHhhCCCCceecCC
Confidence 4688999999999999985 3343321 1 1 11 1223599999999999999998663
No 156
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.73 E-value=1.7e-05 Score=80.41 Aligned_cols=57 Identities=21% Similarity=0.444 Sum_probs=37.3
Q ss_pred CcccccchhHHHhhhhcCcceeeeecCCCCceeeecc--cCCccccccc--cccccccCcccccc
Q 004627 212 TRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV--EKLMTSELSG--NVIDICPVGALTSK 272 (741)
Q Consensus 212 ~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~--~~~~~c~~cg--~cv~vCP~gAl~~~ 272 (741)
++||.||.|+++||. +++.+...+.....++.. .....|.+|+ .|+++||++||...
T Consensus 53 ~~Ci~Cg~Cv~aCP~----~ai~~~~~~~~~~~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~~ 113 (213)
T TIGR00397 53 AACVRCGLCVEACPY----DILSLASWSDPAPLGTPFFTPREVPCRMCKDIPCARACPTGALDPL 113 (213)
T ss_pred ccccchhHHHHhCCc----ccccccccccccccCCccccccCCcCCCCCCchHHhHcCHhhhchh
Confidence 899999999999986 344443222211111111 1122499998 59999999999753
No 157
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=97.69 E-value=1.7e-05 Score=69.82 Aligned_cols=54 Identities=26% Similarity=0.437 Sum_probs=32.8
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCcccccc---------ccccccccCccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELS---------GNVIDICPVGALTS 271 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~c---------g~cv~vCP~gAl~~ 271 (741)
-.+.+|.++||+|+.|+.+||. +++.+.... .....|.+| ..|+++||++||+-
T Consensus 33 G~V~id~~~CigC~~C~~aCP~----~ai~~~~~~---------~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~ 95 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPY----GAIRFDPDT---------GKARKCDLCIDRIEEGEEPACVEACPTGALTF 95 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TT----S-EEEETTT---------TCEEE--TTHHHHTTT-S-HHHHH-TTS-EEE
T ss_pred CeEEechhhccCchhhhhhhcc----Ccceeeccc---------ccCCcCceehhhhhcCCCChhHHhccccceEE
Confidence 3677899999999999999986 344433221 123348888 58999999999963
No 158
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=97.69 E-value=1.7e-05 Score=86.48 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=43.0
Q ss_pred cCcccccccCCcccccc--hhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccc
Q 004627 202 NLGPLVKTVMTRCIQCT--RCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTS 271 (741)
Q Consensus 202 ~~~p~i~~d~~rCI~C~--rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~ 271 (741)
....++.+...+|+||+ .|+.+||. +++.....+. .+....+ .|..|+.|+.+||.+|+.-
T Consensus 171 ~p~~~m~y~p~~C~HC~nP~CV~ACPt----GAI~k~eedG--iV~ID~d---kCiGCg~CV~ACPygAI~~ 233 (492)
T TIGR01660 171 FENTFMMYLPRLCEHCLNPACVASCPS----GAIYKREEDG--IVLIDQD---KCRGWRMCISGCPYKKIYF 233 (492)
T ss_pred CCCceEEECCCcCcCCCcccchhhCcc----CCeEEecCCC--eEEEehh---hccChHHHHHhCCCCCcEe
Confidence 33456667899999998 99999986 4554322211 2223333 3999999999999999863
No 159
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.67 E-value=2.8e-05 Score=92.49 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=53.4
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecc----cCCcccccccc--ccccccCcccccccccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV----EKLMTSELSGN--VIDICPVGALTSKPFAFKA 278 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~----~~~~~c~~cg~--cv~vCP~gAl~~~~~~~~~ 278 (741)
+++.+|.+|||+|++|+.+|+............+.....+.... ..+..|..|+. |+++||++||.........
T Consensus 3 ~~i~~d~~~C~gC~~C~~aC~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~i 82 (654)
T PRK12769 3 RFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQV 82 (654)
T ss_pred cEEEEChHhCcChhHHHHHhhhhhccCCcccccccccceEEEeccccccCCccCCCCCChhHhhhCCccceeccCCeEEE
Confidence 45678999999999999999875443332222222222222111 13446888986 9999999998765421110
Q ss_pred cccceeeeeecCCCCCCCCCce
Q 004627 279 RNWELKGTETIDVTDAVGSNIR 300 (741)
Q Consensus 279 r~wel~~~~siC~~C~~gC~i~ 300 (741)
+ .....-|..|...|...
T Consensus 83 ---d-~~~C~~C~~C~~~CP~~ 100 (654)
T PRK12769 83 ---N-QQKCIGCKSCVVACPFG 100 (654)
T ss_pred ---e-cccccCcChhcccCCcc
Confidence 0 11123355666667543
No 160
>PRK09898 hypothetical protein; Provisional
Probab=97.62 E-value=1.4e-05 Score=81.02 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=39.8
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+.+|.++||+|+.|+++||.. ++.+.... .+...|.+||.|+++||++||...+
T Consensus 148 ~v~vd~~~CigC~~C~~aCP~~----ai~~~~~~---------~~~~kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 148 CITVDHKRCIGCSACTTACPWM----MATVNTES---------KKSSKCVLCGECANACPTGALKIIE 202 (208)
T ss_pred eEEeccccCCCcCcccccCCCC----CCEecCCC---------CcCCcCcChHHHHHhCCcccEEEec
Confidence 4557889999999999999862 23221110 1233599999999999999997554
No 161
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.62 E-value=2e-05 Score=81.94 Aligned_cols=59 Identities=29% Similarity=0.613 Sum_probs=38.1
Q ss_pred CCcccccchhHHHhhhhcCcceeeeecCCCCceeee--cccCCcccccccc--ccccccCccccccc
Q 004627 211 MTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGT--YVEKLMTSELSGN--VIDICPVGALTSKP 273 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~--~~~~~~~c~~cg~--cv~vCP~gAl~~~~ 273 (741)
.++||+|++|+++||. +++.+.........+. +......|.+|+. |+++||++||+...
T Consensus 58 ~~~Ci~Cg~Cv~aCP~----~aI~~~~~~~~~~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 58 LSACIRCGLCVQACPY----DTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred hhhCcCchHHHHhCCc----cccCccccccccccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence 3899999999999986 3444332221111111 1112235999995 99999999998654
No 162
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.60 E-value=1.8e-05 Score=50.67 Aligned_cols=20 Identities=40% Similarity=0.783 Sum_probs=17.9
Q ss_pred ccccCCcccccchhHHHhhh
Q 004627 207 VKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~ 226 (741)
+.+|+++|++||+|+++||+
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred cEEChhhCcChhHHHHhcch
Confidence 46799999999999999986
No 163
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.59 E-value=8.6e-05 Score=81.59 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=52.0
Q ss_pred CcEEEEECCEEE---EeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEc-C---------------CCcccc
Q 004627 68 DAIEVFVDGYPL---KIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVE-K---------------SPKPVA 128 (741)
Q Consensus 68 ~~v~~~idg~~~---~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~-~---------------~~~~~~ 128 (741)
.+|+|..+|+.+ ++++|+|||+|++++|+++|+.|. .|.|+.|.|++. | ..+.++
T Consensus 263 ~~v~~~~~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~------~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l 336 (352)
T TIGR02160 263 SKVTVTLDGRSTETSSLSRDESVLDAALRARPDLPFACK------GGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVL 336 (352)
T ss_pred eEEEEEECCceEEEEecCCCCcHHHHHHHcCCCCcCCCC------CccCCCCEEEEeccccccccccCCCHHHHhCCcEE
Confidence 358999999886 478999999999999999999994 499999999982 1 123468
Q ss_pred cccCCCCCC
Q 004627 129 SCAMPALPG 137 (741)
Q Consensus 129 aC~~~v~~g 137 (741)
+|++.+..+
T Consensus 337 ~C~~~~~~~ 345 (352)
T TIGR02160 337 TCQAYPLSD 345 (352)
T ss_pred EeeEEECCC
Confidence 888877644
No 164
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.54 E-value=4.4e-05 Score=74.27 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=40.9
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccC--CccccccccccccccCccccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEK--LMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~--~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
|.+.++.++|++|+.|+.+||+. ++..........+....+. ...|..|+.|+++||++||..++
T Consensus 59 ~~~~~~~~~C~~C~~C~~~CP~~----ai~~~~~~~~~~~~~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 59 PSVNFKNNECSFCYACAQACPES----LFSPRHTRAWDLQFTIGDACLAYQSVECRRCQDSCEPMAIIFRP 125 (163)
T ss_pred eeeeecCCCCCCchhhHhhCcch----heecccccccceeeeecccCCCccCCCcCcchhhCCHhHeEeee
Confidence 45567889999999999999972 3332211111111111111 11247999999999999998654
No 165
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=97.53 E-value=3e-05 Score=81.48 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=43.0
Q ss_pred cccccccCCcccccc--hhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 204 GPLVKTVMTRCIQCT--RCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 204 ~p~i~~d~~rCI~C~--rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+.+.+...+|++|+ .|+.+||. +++.... .+..+....+ .|..|+.|+++||.+|+....
T Consensus 121 ~~~~~y~p~~C~hC~nP~Cv~aCPt----gAI~k~e--edGiV~ID~e---kCiGCg~Cv~ACPygAi~~n~ 183 (321)
T TIGR03478 121 NNYYFYLPRICNHCTNPACLAACPT----GAIYKRE--EDGIVLVDQE---RCKGYRYCVEACPYKKVYFNP 183 (321)
T ss_pred CceEEEecccCCCCCCccchhhCCc----CcEEEec--CCCeEEECHH---HCcchHHHHHhCCCCCcEecC
Confidence 456668899999999 99999986 4443221 1112333333 499999999999999987443
No 166
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=97.52 E-value=9.4e-05 Score=90.49 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=73.4
Q ss_pred EEECCEEEE--eCCCChHHHHHHHCCCCcccc--ccCCCCCCccccCccEEEEcCCCcccccccCCC--CCCCEEEccch
Q 004627 72 VFVDGYPLK--IPKGFTVLQACEVAGVDIPRF--CYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPA--LPGMKIKTDTP 145 (741)
Q Consensus 72 ~~idg~~~~--~~~g~tvl~a~~~~g~~ip~~--C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v--~~gm~v~t~~~ 145 (741)
|+|||++++ ++++++||+.|+..|..=.+. | ..|.|+.|.|.||| +++.||.+++ -+|.+|.|-..
T Consensus 1 ~~~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c------~~g~CGaCtv~~dg--~~v~sC~~~~~~~~g~~i~Tieg 72 (951)
T TIGR03313 1 FTLNGAPQTLECKLGENVQTLLFNMGMHSVRNSDD------GFGFAGSDAILFNG--VLKNASLLIAAQLEGAEVRTAES 72 (951)
T ss_pred CEECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCC------CcccCCCCEEEECC--eEeeHHHHHHHHcCCCEEEecCc
Confidence 579998765 469999999999988766665 5 45999999999999 7899999998 58999999654
Q ss_pred hHHHHH-hHHHHHHHhhCCCCCCCcCCCC
Q 004627 146 LAKKAR-EGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 146 ~~~~~r-~~~le~~l~~hp~dC~~C~~~g 173 (741)
...... ..+-+.++..|-..|..|.-|-
T Consensus 73 l~~~~~~~~~q~af~~~~a~QCG~CtpG~ 101 (951)
T TIGR03313 73 LGQWNQLSLVQQAMVDVGVVQSGYNDPAA 101 (951)
T ss_pred CCCCCCCCHHHHHHHHcCCCcCCCChHHH
Confidence 432212 2344566778999999998764
No 167
>PRK07118 ferredoxin; Validated
Probab=97.52 E-value=4.3e-05 Score=80.70 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=49.9
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeee
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGT 286 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~ 286 (741)
.+...||+|+.|+++||. +++.+.+ ....+ +...|..||.|+++||++||.......+.+.|+....
T Consensus 210 ~~~~~Ci~Cg~Cv~~CP~----~AI~~~~--~~~vI-----d~~~C~~Cg~C~~~CP~~AI~~~~~~~~~~~~~~~~~ 276 (280)
T PRK07118 210 VCEVGCIGCGKCVKACPA----GAITMEN--NLAVI-----DQEKCTSCGKCVEKCPTKAIRILNKPPKVKEPKKAAA 276 (280)
T ss_pred ccccccccchHHHhhCCc----CcEEEeC--CcEEE-----cCCcCCCHHHHHHhCCccccEeecccccccccCCccc
Confidence 357889999999999986 5555532 11122 2234999999999999999999887777788866543
No 168
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=97.51 E-value=0.00015 Score=82.12 Aligned_cols=98 Identities=24% Similarity=0.420 Sum_probs=73.9
Q ss_pred EEEEECCEEEEe---CCCChHHHHHHH-CCCCcccc-ccCCCCCCccccCccEEEE----cCC---CcccccccCCC--C
Q 004627 70 IEVFVDGYPLKI---PKGFTVLQACEV-AGVDIPRF-CYHSRLSIAGNCRMCLVEV----EKS---PKPVASCAMPA--L 135 (741)
Q Consensus 70 v~~~idg~~~~~---~~g~tvl~a~~~-~g~~ip~~-C~~~~l~~~G~C~~C~V~v----~~~---~~~~~aC~~~v--~ 135 (741)
++|+|||+++++ ++++|+|+.++. .|..=.+. | ..|.|+.|.|.| +|. .+++.||.+++ -
T Consensus 1 i~~~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC------~~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~ 74 (467)
T TIGR02963 1 IRFFLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGC------AEGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSL 74 (467)
T ss_pred CEEEECCEEEEeecCCCCCCHHHHHHHhcCCCCCCccc------CCCCCCceEEEEEecCCCCcccceEEehhhhhHHhc
Confidence 479999998776 489999999997 47654433 5 569999999999 762 25789999999 6
Q ss_pred CCCEEEccchhHH-HH-HhHHHHHHHhhCCCCCCCcCCCC
Q 004627 136 PGMKIKTDTPLAK-KA-REGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 136 ~gm~v~t~~~~~~-~~-r~~~le~~l~~hp~dC~~C~~~g 173 (741)
+|..|.|-..... .. -.-+-+.+...|-..|..|.-|-
T Consensus 75 ~g~~i~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~CtpG~ 114 (467)
T TIGR02963 75 DGKAVVTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGF 114 (467)
T ss_pred CCCEEEecCCCCCCCCCCCHHHHHHHHcCCCcCCCCchHH
Confidence 8999998544321 11 12344566788999999999875
No 169
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.49 E-value=3.9e-05 Score=76.05 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=39.2
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCce------eeecccCCccccccc------cccccccCccccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEE------IGTYVEKLMTSELSG------NVIDICPVGALTSKP 273 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~------i~~~~~~~~~c~~cg------~cv~vCP~gAl~~~~ 273 (741)
+.+|.++|++|+.|+.+||. .++.+..+..... ..........|.+|| .|+++||++||...+
T Consensus 82 v~i~~~~C~~C~~C~~~CP~----~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~ 156 (181)
T PRK10330 82 VHVMQERCIGCKTCVVACPY----GAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVD 156 (181)
T ss_pred EEeChhhCCCcchhhhhCCc----cCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeC
Confidence 44688899999999999986 3333322111000 000111223589998 899999999998655
No 170
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=97.40 E-value=4.5e-05 Score=80.20 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=40.5
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCcccccc---------ccccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELS---------GNVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~c---------g~cv~vCP~gAl~~~~ 273 (741)
.+.+|.++|++|+.|+.+||. +++.+.... .+...|.+| ..|+++||++|+.--.
T Consensus 156 iV~ID~ekCiGCg~Cv~ACPy----gAi~~n~~~---------~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGd 219 (321)
T TIGR03478 156 IVLVDQERCKGYRYCVEACPY----KKVYFNPQS---------QKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGY 219 (321)
T ss_pred eEEECHHHCcchHHHHHhCCC----CCcEecCCC---------CchhhCCCchhhhccCCCCHHHhhcCcccEEEEe
Confidence 456799999999999999996 334332211 122349999 7999999999987544
No 171
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.39 E-value=6.1e-05 Score=46.56 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=17.4
Q ss_pred ccccCCcccccchhHHHhhh
Q 004627 207 VKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~ 226 (741)
+.+|.+|||+|+.|+.+||+
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 34699999999999999973
No 172
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.39 E-value=5e-05 Score=79.04 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=43.0
Q ss_pred CcccccccCCccc-----ccchhHHHhhhhcCcceeeeecCCC----CceeeecccCCccccccccccccccCc--cccc
Q 004627 203 LGPLVKTVMTRCI-----QCTRCVRFATEVAGVQDLGMLGRGS----GEEIGTYVEKLMTSELSGNVIDICPVG--ALTS 271 (741)
Q Consensus 203 ~~p~i~~d~~rCI-----~C~rCvr~C~~i~g~~~l~~~~r~~----~~~i~~~~~~~~~c~~cg~cv~vCP~g--Al~~ 271 (741)
.+..+.+|.++|+ +|+.|+++||.. ..++.+..... .........+...|+.||.|+++||++ ||..
T Consensus 128 ~g~av~id~~~Ci~~~~~~C~~C~~~CP~~--~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v 205 (254)
T PRK09476 128 MGLAVLVDQENCLNFQGLRCDVCYRVCPLI--DKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKV 205 (254)
T ss_pred cCceeecchhhccccCCCchHHHhhhCCCc--cCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEE
Confidence 3444557999999 899999999952 23454432211 000000111222499999999999999 7765
Q ss_pred cc
Q 004627 272 KP 273 (741)
Q Consensus 272 ~~ 273 (741)
.+
T Consensus 206 ~p 207 (254)
T PRK09476 206 LP 207 (254)
T ss_pred eh
Confidence 44
No 173
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=97.38 E-value=8e-05 Score=73.84 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=39.1
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCcccccc------c---cccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELS------G---NVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~c------g---~cv~vCP~gAl~~~~ 273 (741)
.+.+|.++||+|+-|+.+||- ++..+.. .......|++| | .||+.||++||.-.+
T Consensus 94 iV~vd~d~CIGC~yCi~ACPy----ga~~~~~---------~~~~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~ 157 (203)
T COG0437 94 IVLVDKDLCIGCGYCIAACPY----GAPQFNP---------DKGVVDKCTFCVDRVAVGKLPACVEACPTGALIFGD 157 (203)
T ss_pred EEEecCCcccCchHHHhhCCC----CCceeCc---------ccCcccccCcchhhHhcCCCCcccccCCcccccccc
Confidence 677899999999999999986 2222111 00112349999 8 899999999997554
No 174
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.37 E-value=6.7e-05 Score=77.68 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=40.5
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccc---------cccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSG---------NVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg---------~cv~vCP~gAl~~~~ 273 (741)
.+.+|.++|++|+.|+.+||. +++.+.+.. .....|.+|+ .|+++||++||.-.+
T Consensus 124 ~v~id~~~CigC~~Cv~aCP~----~Ai~~~~~~---------~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~ 187 (244)
T PRK14993 124 IVVVDNKRCVGCAYCVQACPY----DARFINHET---------QTADKCTFCVHRLEAGLLPACVESCVGGARIIGD 187 (244)
T ss_pred CEEEcHHHCCCHHHHHHhcCC----CCCEEeCCC---------CCcccCcCCcchhhCCCCcccchhcccCCEEEcc
Confidence 456789999999999999986 444443221 1123499998 899999999987544
No 175
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=97.37 E-value=7.8e-05 Score=76.36 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=36.3
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccc----------cccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSG----------NVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg----------~cv~vCP~gAl~~~~ 273 (741)
.+.+|.++|++|+.|+.+||..+ +.+.. .......|.+|+ .|+++||++||.-.+
T Consensus 119 ~v~id~~~C~~C~~C~~aCP~~A----~~~~~---------~~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~ 183 (225)
T TIGR03149 119 IVDVHKDLCVGCQYCIAACPYRV----RFIHP---------VTKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGD 183 (225)
T ss_pred eEEechhhCCcchHHHHhCCCCC----cEecC---------CCCccccCCCCCcchhhCCCCCcccccCccCCEEEec
Confidence 35568888999999999998622 22111 001223588998 699999999986443
No 176
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=97.31 E-value=9.8e-05 Score=76.01 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=39.6
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
++..+..+|+.|++|+..||- ++++.. ....|.. ++ |..||+|.++||+||+.
T Consensus 187 ~p~v~e~kc~~c~~cv~~cp~----~Ai~~~---~~~~I~~--~~---ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 187 KPVVVEEKCYDCGLCVKICPV----GAITLT---KVVKIDY--EK---CIGCGQCMEACPYGAVD 239 (354)
T ss_pred CceeeeecccccchhhhhCCC----cceecc---cceeech--hh---ccchhhhhhhccCcccc
Confidence 444578999999999999974 566554 1123332 33 99999999999999985
No 177
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=97.29 E-value=7.7e-05 Score=77.94 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=40.3
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
+.+|.++|.+|++|+.+||. ++++..+ ..+....++ |..||+|+..|| .|+...
T Consensus 167 P~~~~E~c~gc~~cv~~C~~----gAI~~~~----~~l~id~~~---Ci~Cg~Ci~~Cp-~~~~~~ 220 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPT----GAITWDG----KKLKIDGSK---CIGCGKCIRACP-KAAFRG 220 (317)
T ss_pred CccCHHHhchhHhHHHhCCC----Cceeecc----ceEEEehhh---ccCccHHhhhCC-hhhcch
Confidence 34689999999999999975 6776654 234444344 999999999999 665443
No 178
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.29 E-value=0.00011 Score=60.05 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=30.3
Q ss_pred cccccchhHHHhhhhcCcce--eeeecCCCC----ceeeecccCCccc------cccccccccccCc
Q 004627 213 RCIQCTRCVRFATEVAGVQD--LGMLGRGSG----EEIGTYVEKLMTS------ELSGNVIDICPVG 267 (741)
Q Consensus 213 rCI~C~rCvr~C~~i~g~~~--l~~~~r~~~----~~i~~~~~~~~~c------~~cg~cv~vCP~g 267 (741)
+|+.|++|+++||.-+.... -.+...+.. ........+...| ..||.|++|||.+
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred CCcchhHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 59999999999997433222 111111110 0111111111224 4999999999975
No 179
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=97.27 E-value=5.6e-05 Score=82.08 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=38.1
Q ss_pred cccccCCcccccchhH--HHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 206 LVKTVMTRCIQCTRCV--RFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCv--r~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
.+.++.++|++|++|+ .+||.. ++. +. ..+ +...|..||.|+++||.+|+...
T Consensus 296 ~p~id~dkCi~Cg~C~~~~aCPt~----AI~---~~--~~I-----d~~~Ci~CGaCV~aCP~~AI~~~ 350 (391)
T TIGR03287 296 RPKYNPERCENCDPCLVEEACPVP----AIK---KD--GTL-----NTEDCFGCGYCAEICPGGAFEVN 350 (391)
T ss_pred eEEEchhhCcCCCCCcCCcCCCHh----hEe---cc--cee-----ChHhCcChHHHHhhCCccceEEe
Confidence 3457899999999995 899862 222 11 111 12349999999999999998654
No 180
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=97.27 E-value=7.2e-05 Score=78.78 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=33.6
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccc---------cccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSG---------NVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg---------~cv~vCP~gAl~~~~ 273 (741)
.+.+|.++||+|+.|+.+||. +++.+.... .....|.+|. .|+++||++||.-..
T Consensus 118 ~V~id~dkCigC~~Cv~aCP~----~a~~~~~~~---------~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~ 181 (283)
T TIGR01582 118 IVDFDHSKCIGCGYCIVGCPF----NIPRYDKVD---------NRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGF 181 (283)
T ss_pred cEEEeHHHCCcchHHHhhCCC----CCcEEcCCC---------CChhhhcccccccccCCCChHhCcccHhhEEECC
Confidence 345677888888888888875 233322111 1122477773 788888888886544
No 181
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=97.24 E-value=0.00011 Score=70.43 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=35.1
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCcccccc------ccccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELS------GNVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~c------g~cv~vCP~gAl~~~~ 273 (741)
.+..|.+|||+|++|+.+||. +++.+..+.. ........|.+| ..|+++||++||.--.
T Consensus 76 ~v~V~~ekCiGC~~C~~aCPf----Gai~~~~~~~-----~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~ 140 (165)
T COG1142 76 AVQVDEEKCIGCKLCVVACPF----GAITMVSYPV-----AAKAVAVKCDLCAGREVGPACVEACPTEALELVD 140 (165)
T ss_pred ceEEchhhccCcchhhhcCCc----ceEEEEeecC-----cchhhhhhcccccCccCCCceeeeCCHHHhhccc
Confidence 444578888888888888874 4444433311 001111235555 3588888888886555
No 182
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.22 E-value=0.00023 Score=70.54 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=51.1
Q ss_pred cccccCCcccccchhHHHhhhhcCcc--eeeeecCCCCceee--ecc--cCCccccccc--cccccccCccccccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQ--DLGMLGRGSGEEIG--TYV--EKLMTSELSG--NVIDICPVGALTSKPFAFK 277 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~--~l~~~~r~~~~~i~--~~~--~~~~~c~~cg--~cv~vCP~gAl~~~~~~~~ 277 (741)
++.+|.++||+|+.|+.+|+...... ...+........+. ... ..+..|..|+ .|+++||+|||........
T Consensus 4 ~~~~d~~~C~gC~~C~~aC~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~C~~C~~~~C~~~Cp~~ai~~~~~~v~ 83 (181)
T PRK10330 4 FIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIHVIKGVNVSTATVCRQCEDAPCANVCPNGAISRDKGFVH 83 (181)
T ss_pred EEEeCcccCcCccHHHHHHHHHHcCCccccccccccCceeEEEecCCCcccCCcCcCcCCcHHHHHcCcccEEccCCeEE
Confidence 56779999999999999999633211 01111111111111 111 1234689999 8999999999965431100
Q ss_pred ccccceeeeeecCCCCCCCCCceE
Q 004627 278 ARNWELKGTETIDVTDAVGSNIRI 301 (741)
Q Consensus 278 ~r~wel~~~~siC~~C~~gC~i~v 301 (741)
.. ...-.-|..|...|...+
T Consensus 84 i~----~~~C~~C~~C~~~CP~~a 103 (181)
T PRK10330 84 VM----QERCIGCKTCVVACPYGA 103 (181)
T ss_pred eC----hhhCCCcchhhhhCCccC
Confidence 00 011234566777776443
No 183
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=97.20 E-value=0.00019 Score=73.55 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=39.3
Q ss_pred cccccCCcccccch--hHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 206 LVKTVMTRCIQCTR--CVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 206 ~i~~d~~rCI~C~r--Cvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
.+.++...|++|+. |+.+||. +++...... ..+....+ .|..||.|+++||.+|+.
T Consensus 86 ~~~~~~~~C~~C~~~~Cv~~CP~----gAi~~~~~~--g~v~id~~---~C~~C~~C~~aCP~~A~~ 143 (225)
T TIGR03149 86 EYRFFRKSCQHCDNAPCVAVCPT----GASFKDEET--GIVDVHKD---LCVGCQYCIAACPYRVRF 143 (225)
T ss_pred eeEECchhccCCcCcChHhhCCC----CcEEEeCCC--CeEEechh---hCCcchHHHHhCCCCCcE
Confidence 34467899999996 9999986 444432211 12323223 499999999999999974
No 184
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=97.15 E-value=0.00015 Score=80.81 Aligned_cols=43 Identities=23% Similarity=0.525 Sum_probs=31.6
Q ss_pred CCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 211 MTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
.++|++|++|+++||.. +.. ++. ...+|..||.|+++||. |+.
T Consensus 230 ~~~Ci~C~~Cv~vCP~g-----i~~--~~~---------~~~~Ci~Cg~CidaCp~-a~~ 272 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG-----IDI--RDG---------LQLECINCGLCIDACDD-VME 272 (434)
T ss_pred CCCCCChhhhHHhCCCC-----CEe--CCC---------CchhChhhhHHHHhCCC-hHH
Confidence 68999999999999962 111 111 11359999999999998 653
No 185
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.15 E-value=0.00019 Score=72.86 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=40.2
Q ss_pred ccccCCccc-----ccchhHHHhhhhcCcceeeeecCCCC-ceeeecccCCccccccccccccccCc--cccccc
Q 004627 207 VKTVMTRCI-----QCTRCVRFATEVAGVQDLGMLGRGSG-EEIGTYVEKLMTSELSGNVIDICPVG--ALTSKP 273 (741)
Q Consensus 207 i~~d~~rCI-----~C~rCvr~C~~i~g~~~l~~~~r~~~-~~i~~~~~~~~~c~~cg~cv~vCP~g--Al~~~~ 273 (741)
+.+|.++|+ +|+.|+++||. +..++.+...... ..+....-+...|..||.|+++||++ ||+..+
T Consensus 126 v~id~~~C~~~~g~~C~~C~~~CP~--~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~ 198 (213)
T TIGR00397 126 VLVGHETCLNYKGLNCSICVRVCPI--RGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLP 198 (213)
T ss_pred EEECCCCcccCCCCCcccchhhCCC--CcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEee
Confidence 446889998 99999999996 2234444321100 00111111223599999999999988 665444
No 186
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.14 E-value=0.00018 Score=77.35 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=51.1
Q ss_pred ccccCCcccccchhHHHhhhhcCcceee----ee------cCCCCceeeecc---------------cCCccccccc--c
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLG----ML------GRGSGEEIGTYV---------------EKLMTSELSG--N 259 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~----~~------~r~~~~~i~~~~---------------~~~~~c~~cg--~ 259 (741)
+.+|.+|||+|+.|+-+|.+........ .. .......|..+. .....|..|+ .
T Consensus 40 ~liD~tkCiGC~aC~~AC~~~n~~~~~~~~~~~~~~~~~l~~~~~~~I~~~~~~~~~~~d~~~~~~~~~~~~C~hC~~p~ 119 (328)
T PRK10882 40 MLYDSTLCVGCQACVTKCQEINFPERNPQGEQTWDNPDKLSPYTNNIIKVWKSGTGVNKDQEENGYAYIKKQCMHCVDPN 119 (328)
T ss_pred EEEeHhhCCCChHHHHHhccccCCCCcccccceecccccccccccceEEEEecCccccccccccccccccccCCCcCchh
Confidence 4579999999999999998644211100 00 000011121111 1223599998 8
Q ss_pred ccccccCcccccccccccccccceeeeeecCCCCCCCCCceE
Q 004627 260 VIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRI 301 (741)
Q Consensus 260 cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v 301 (741)
|+++||++||...+.. ....++. ....-|..|...|...+
T Consensus 120 Cv~aCP~gAi~k~~~~-g~V~id~-dkCigCg~Cv~aCP~ga 159 (328)
T PRK10882 120 CVSVCPVSALTKDPKT-GIVHYDK-DVCTGCRYCMVACPFNV 159 (328)
T ss_pred hHhhCCCCCEEecccC-CcccCCH-HHcCcccHHHHhCCccc
Confidence 9999999999864310 0011111 12234666777887544
No 187
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.13 E-value=0.00018 Score=69.86 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=33.7
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccc---------cccccccCcccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSG---------NVIDICPVGALTSK 272 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg---------~cv~vCP~gAl~~~ 272 (741)
.+.++.++|++|+.|+.+||. .++.+.... .....|.+|+ .|+++||++||.-.
T Consensus 89 ~~~i~~~~C~~C~~C~~aCP~----~ai~~~~~~---------~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~ 151 (161)
T TIGR02951 89 LVLVDQDKCIGCRYCVWACPY----GAPQYDPQQ---------GVMGKCDGCYDRVEKGLRPACVDACPMRALDFG 151 (161)
T ss_pred cEEECHHhCCCchHHHhhCCC----CCcEEcCCC---------CccccCCCCHHHHHCCCCCcchhhccccceEEe
Confidence 345677888888888888875 233322111 1122488886 78888888887544
No 188
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=97.12 E-value=0.00017 Score=75.75 Aligned_cols=59 Identities=20% Similarity=0.383 Sum_probs=42.0
Q ss_pred CcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 203 LGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 203 ~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
..|.+.+ .++|++|++|+.+||. +++.+.+ + ...+ .....|..|+.|+++||.+||...
T Consensus 161 ~~p~I~i-~~~C~~C~~C~~~CP~----~vi~~~~-~-~~~v----~~~~~C~~C~~Ci~~CP~~AI~i~ 219 (263)
T PRK00783 161 YYPRIEV-SEDCDECEKCVEACPR----GVLELKE-G-KLVV----TDLLNCSLCKLCERACPGKAIRVS 219 (263)
T ss_pred ccccccc-cccCCchHHHHHhCCc----cccEecC-C-eEEE----eChhhCCCchHHHHhCCCCceEEE
Confidence 3467777 7999999999999986 3444422 1 1111 133459999999999999998643
No 189
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.12 E-value=0.00017 Score=69.99 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=38.7
Q ss_pred ccccCCcccccchhHHHhhhhcCcc-e---eee--ecCCC--------CceeeecccCCccccccc--cccccccCcccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQ-D---LGM--LGRGS--------GEEIGTYVEKLMTSELSG--NVIDICPVGALT 270 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~-~---l~~--~~r~~--------~~~i~~~~~~~~~c~~cg--~cv~vCP~gAl~ 270 (741)
+.+|.+|||+|++|+.+|++..... . ... ...+. ...+.. ...+..|..|+ .|+++||++||.
T Consensus 4 ~~~d~~~C~gC~~C~~aC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~C~~C~~~~C~~~CP~~ai~ 82 (161)
T TIGR02951 4 FYVDQTRCSGCKTCQIACKDKNDLEVGVLFRRVYEYEGGGWTEEGEGFHPDVFA-YYISISCNHCADPACVKNCPTGAMY 82 (161)
T ss_pred EEEEcccCcCchHHHHHHHHHcCCCCCCceEEEEEecCCccccccccCCCCceE-EEcCccCCCcCCcchHHhCCCCCEE
Confidence 4579999999999999998521110 0 000 00000 000000 01234699999 899999999997
Q ss_pred cc
Q 004627 271 SK 272 (741)
Q Consensus 271 ~~ 272 (741)
..
T Consensus 83 ~~ 84 (161)
T TIGR02951 83 KR 84 (161)
T ss_pred ee
Confidence 53
No 190
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.11 E-value=0.00026 Score=84.01 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=41.7
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeec----ccCCcccccccc--ccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTY----VEKLMTSELSGN--VIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~----~~~~~~c~~cg~--cv~vCP~gAl~~~~ 273 (741)
++.+|.++||+|+.|+.+|+.......+..........|... ...+..|..|+. |+++||++||...+
T Consensus 4 ~~~~d~~~C~gC~~C~~aC~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~C~~C~~~~C~~~CP~~ai~~~~ 77 (639)
T PRK12809 4 FIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAANPVACHHCNNAPCVTACPVNALTFQS 77 (639)
T ss_pred EEEEChhhCcChhHHHHHhhhhhccCccccccCCCCceEEEeccccCccCCCCcCcCChhHHhhCCcCceeccc
Confidence 566799999999999999987432222211111111222211 112345888886 99999999987543
No 191
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.11 E-value=0.0002 Score=83.73 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=40.7
Q ss_pred ccccCCccccc------chhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 207 VKTVMTRCIQC------TRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 207 i~~d~~rCI~C------~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
+.++.+||++| +.|+++||+ .++.....+.. +... ...|..||.|+++||++||+..+
T Consensus 499 ~~~~~~rCl~C~~c~~C~~C~~~Cp~----~ai~~~~~~~~--~~i~---~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 499 ARQEAARCLSCGNCFECDNCYGACPQ----DAIIKLGPGRR--YHFD---YDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhhhcccCcccccccccchhhhhCCh----hheeeecCCce--EEEe---cccCcChhHHHhhcCcCceEecc
Confidence 45788999988 899999987 33433322221 2222 23499999999999999998654
No 192
>PRK13795 hypothetical protein; Provisional
Probab=97.11 E-value=0.00019 Score=84.57 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=40.3
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
..++.++|++|+.|+.+||. +++...+... .+.... ..|..||.|+++||++|+..+
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~----~ai~~~~~~~--~~~id~---~~C~~Cg~C~~aCP~~a~~~~ 632 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPT----GAIRIEEGKR--KISVDE---EKCIHCGKCTEVCPVVKYKDK 632 (636)
T ss_pred EEEccccCCCHhHHHHhCCc----ccEEeecCCc--eEEech---hhcCChhHHHhhcCCCeeEee
Confidence 34678999999999999985 3444432211 122222 249999999999999999764
No 193
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=97.08 E-value=0.00066 Score=86.08 Aligned_cols=98 Identities=22% Similarity=0.461 Sum_probs=75.8
Q ss_pred EEEEECCEEE---EeCCCChHHHHHHH-CCCCcccc-ccCCCCCCccccCccEEEEcCC--------CcccccccCCC--
Q 004627 70 IEVFVDGYPL---KIPKGFTVLQACEV-AGVDIPRF-CYHSRLSIAGNCRMCLVEVEKS--------PKPVASCAMPA-- 134 (741)
Q Consensus 70 v~~~idg~~~---~~~~g~tvl~a~~~-~g~~ip~~-C~~~~l~~~G~C~~C~V~v~~~--------~~~~~aC~~~v-- 134 (741)
++|+|||+.+ .+++++|||+.++. .|..=.++ | ..|.|+.|.|.|++. .+++.||.+++
T Consensus 3 ~~~~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC------~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 76 (1330)
T TIGR02969 3 LLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGC------GGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICS 76 (1330)
T ss_pred EEEEECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCc------CCCCCCCcEEEECCccccccccCCcEEehhHHHHHH
Confidence 8899999997 47899999999997 47655444 5 569999999999852 36899999999
Q ss_pred CCCCEEEccchhHH-HHH-hHHHHHHHhhCCCCCCCcCCCC
Q 004627 135 LPGMKIKTDTPLAK-KAR-EGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 135 ~~gm~v~t~~~~~~-~~r-~~~le~~l~~hp~dC~~C~~~g 173 (741)
-+|..|.|-..... ..+ .-+-+.+..+|-..|..|.-|.
T Consensus 77 ~~g~~v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfCtpG~ 117 (1330)
T TIGR02969 77 LYGAAVTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGM 117 (1330)
T ss_pred hCCCEEEecCCcCCCCCCCCHHHHHHHHcCCCcCCCCchHH
Confidence 68999999654322 111 2345566788999999999875
No 194
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.08 E-value=0.00015 Score=79.30 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=44.0
Q ss_pred cccc-ccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccccc
Q 004627 205 PLVK-TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFA 275 (741)
Q Consensus 205 p~i~-~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~ 275 (741)
|++. .|.++|++|+.|+. ||. +++... + ..-.+..|..||-|..+||.||+..+-|.
T Consensus 553 ~~~a~vde~~C~gC~~C~~-Cpf----~ais~~-k--------a~v~~~~C~gCG~C~~aCp~gai~~~~f~ 610 (622)
T COG1148 553 PFVATVDEDKCTGCGICAE-CPF----GAISVD-K--------AEVNPLRCKGCGICSAACPSGAIDLAGFS 610 (622)
T ss_pred ccccccchhhhcCCcceee-CCC----Cceecc-c--------cccChhhhCcccchhhhCCcccchhcccC
Confidence 4443 48999999999999 986 566553 2 22344569999999999999999887764
No 195
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=97.06 E-value=0.0002 Score=75.11 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=46.8
Q ss_pred HhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccc
Q 004627 183 AFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVID 262 (741)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~ 262 (741)
.+|..+..|...-... -..-|.+.++ ++|++|+.|+++||. +++.+.+ + ... ...+..|..|+.|++
T Consensus 143 g~g~~hakw~p~~~~~--yr~~P~i~i~-~~C~~C~~C~~~CP~----~vi~~d~-~--~~~---v~~~~~C~~C~~C~~ 209 (259)
T cd07030 143 GRGKEHAKWQPTTACG--YKYYPVIEID-EDCDGCGKCVEECPR----GVLELEE-G--KVV---VEDLEDCSLCKLCER 209 (259)
T ss_pred CccCCCCCCCCccEEE--EEeecceech-hhCCChHHHHHhCCc----cceEccC-C--eeE---EeChhhCcCchHHHH
Confidence 3555566665321110 1112555544 899999999999986 4444322 1 111 112235999999999
Q ss_pred cccCcccccc
Q 004627 263 ICPVGALTSK 272 (741)
Q Consensus 263 vCP~gAl~~~ 272 (741)
+||.+|+...
T Consensus 210 ~Cp~~AI~~~ 219 (259)
T cd07030 210 ACDAGAIRVG 219 (259)
T ss_pred hCCCCcEEEE
Confidence 9999998644
No 196
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=97.05 E-value=0.0001 Score=82.29 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=37.5
Q ss_pred ccCCcccccchhHHHhhhhcCcc--eeeeecCCCCcee--------eecccCCccccccccccccccCcccc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQ--DLGMLGRGSGEEI--------GTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~--~l~~~~r~~~~~i--------~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
.+..+||.||.|+.+||.....+ ..+....|....+ .........|..||.|.++||++--.
T Consensus 290 ~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~gI~~ 361 (432)
T TIGR00273 290 REVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVKIPL 361 (432)
T ss_pred hhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCCCcH
Confidence 46899999999999999753221 1121111111000 11112335799999999999997543
No 197
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.04 E-value=0.00016 Score=84.80 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=37.3
Q ss_pred ccccccCCcccccchhHH--HhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccc
Q 004627 205 PLVKTVMTRCIQCTRCVR--FATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr--~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl 269 (741)
+.+.+|.++|++|++|++ .||.+. . ++....+ +. .|..||.|+++||++||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~~~------~--~~~~~~i----~~--~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPAIE------P--EDKEAVI----DP--LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCCcc------c--cCCccee----CC--CCcCHHHHHhhCccccC
Confidence 456779999999999999 998422 1 1111122 11 49999999999999986
No 198
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.03 E-value=0.00036 Score=72.31 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=38.6
Q ss_pred ccccCCcccccchhHHHhhhhcCcc----eeeee--c--CCCCceeeecccCCcccccccc--ccccccCccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQ----DLGML--G--RGSGEEIGTYVEKLMTSELSGN--VIDICPVGALTS 271 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~----~l~~~--~--r~~~~~i~~~~~~~~~c~~cg~--cv~vCP~gAl~~ 271 (741)
+.+|.+|||+|++|+.+|+...... ...+. . +....... ....+..|..|++ |+++||++|+..
T Consensus 46 ~~iD~~kCiGC~~C~~AC~~~n~~p~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~C~~C~~p~Cv~~CP~~Ai~~ 119 (244)
T PRK14993 46 MLIDLRRCIGCQSCTVSCTIENQTPQGAFRTTVNQYQVQREGSQEVT-NVLLPRLCNHCDNPPCVPVCPVQATFQ 119 (244)
T ss_pred EEEEHHHCCCchHHHHHhhhhccCCCCccceEEEEEEeccCCCCcce-eeecchhcCCcCCccCccccCCCCEEE
Confidence 5579999999999999998622111 00000 0 00000000 0112346999997 999999999854
No 199
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.02 E-value=0.00024 Score=45.56 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=13.0
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
.+|.++|++||+|+++||.
T Consensus 2 ~id~~~C~~Cg~C~~~CP~ 20 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPF 20 (24)
T ss_dssp EEETTTSSS-THHHHHSTT
T ss_pred EEchHHCCCcchhhhhccc
Confidence 4567777777777777775
No 200
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=97.02 E-value=0.00017 Score=84.99 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=35.3
Q ss_pred cCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcc
Q 004627 210 VMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
+...||.||+|+++||.......+....+..+... .......+|..||.|..+||.+-
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~-~~~~~~~~CieCG~C~~vCPs~I 425 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDK-AQEYNLFDCIECGACAYVCPSNI 425 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccch-hhhcChhhccccCcccccCCCCC
Confidence 56789999999999997433222221111111000 00112346999999999999983
No 201
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=97.02 E-value=0.00015 Score=57.50 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=27.5
Q ss_pred cCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 210 VMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
|.++||+||.|+..||+ .+.+.+.+....+.........=..+-.-++.||++||.
T Consensus 2 D~~~Ci~Cg~C~~~aP~-----vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~ 57 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPD-----VFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIR 57 (58)
T ss_dssp -TTT--S-SHHHHH-TT-----TEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EE
T ss_pred ChhhCcCCChHHHhCcH-----heeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcC
Confidence 67999999999999997 344443322111111111100112456788999999985
No 202
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=97.00 E-value=0.00014 Score=85.14 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=37.0
Q ss_pred cccccCCcccccchhHHHhhhhcCc-ceeeeecCCCCceeeecccCCccccccccccccccCcc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGV-QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~-~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
.+....++|++||+|+++||..... ..+.....+....+. .....|..||.|+++||.+.
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~---~~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLE---QLEEQCYACGRCEQACPKNI 453 (784)
T ss_pred HHhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccc---cCHhhhhhhhHHhccCCCCC
Confidence 3445789999999999999963111 111112222211111 11225999999999999984
No 203
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=96.96 E-value=0.00038 Score=76.06 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=36.4
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeeecCCCCcee---eec--ccCCccccccccccccccCccc
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEI---GTY--VEKLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i---~~~--~~~~~~c~~cg~cv~vCP~gAl 269 (741)
.++.++|++|+.|+.+||. +++.+......... ..+ ......|..||.|.++||..++
T Consensus 8 vi~~~~C~gCg~C~~~CP~----~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPI----GAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred EECcccCcChHHHHHhCCH----hhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 3578999999999999996 23333221110000 001 1123469999999999998654
No 204
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=96.96 E-value=9.3e-05 Score=86.62 Aligned_cols=61 Identities=16% Similarity=0.375 Sum_probs=38.9
Q ss_pred ccccccCCcccccchhHHHhhhhcCc-ceeeeecCCCCceeeecccCCccccccccccccccCcc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGV-QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~-~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
+.+.++.++|++|+.|+++||..... ..+....++... ........|.+||+|.++||++.
T Consensus 397 eEl~~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~---~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 397 EELKELAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLS---KLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHHHHhhhhCcCCCCccccCCCCcchhHHHHHHhcCChh---hhhhhhhhccchhHHhhhCCCCC
Confidence 45567889999999999999963211 112222222111 11112346999999999999986
No 205
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.94 E-value=0.0002 Score=40.33 Aligned_cols=15 Identities=33% Similarity=0.866 Sum_probs=10.7
Q ss_pred ccccccccccccCcc
Q 004627 254 SELSGNVIDICPVGA 268 (741)
Q Consensus 254 c~~cg~cv~vCP~gA 268 (741)
|.+||.|+++||+||
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 556777777777776
No 206
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=96.94 E-value=0.00038 Score=75.28 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=35.7
Q ss_pred CCcccccchhHHHhhhhc--CcceeeeecCCCCceeee--------cccCCccccccccccccccCcc
Q 004627 211 MTRCIQCTRCVRFATEVA--GVQDLGMLGRGSGEEIGT--------YVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~--g~~~l~~~~r~~~~~i~~--------~~~~~~~c~~cg~cv~vCP~gA 268 (741)
.-+||.||+|..+||.+. |-...+-..-|.-..+-+ +.+.+..|..||.|.+|||+.=
T Consensus 307 ~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 307 ALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred HHHhhcchHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCCC
Confidence 447999999999999743 222222222222111111 1234456999999999999974
No 207
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=96.92 E-value=0.00011 Score=86.18 Aligned_cols=62 Identities=13% Similarity=0.271 Sum_probs=38.9
Q ss_pred ccccccCCcccccchhHHHhhhhcCc-ceeeeecCCCCceeeecccCCccccccccccccccCccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGV-QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~-~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl 269 (741)
+.+..+.++||+||.|+++||..... ..+....++.... .......|..||+|+++||+++=
T Consensus 358 ~el~~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~---l~~~~~~Ct~CG~C~evCP~gIp 420 (731)
T cd01916 358 EEFQELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSG---LADLFDQCVGCGRCEQECPKEIP 420 (731)
T ss_pred HHHHHhhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhh---hhhhHhhhhhhhHHhhhCCCCCC
Confidence 34456789999999999999963211 1111112221111 11123469999999999999983
No 208
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.90 E-value=0.00037 Score=82.98 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=22.5
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
..+-|+++|+-|..-.- ...++ +.|.+|++++..
T Consensus 326 ~~~~VaIIGaGpAGLsa--A~~L~----~~G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLAC--ADVLA----RNGVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHH--HHHHH----HCCCeEEEEecC
Confidence 56789999998754321 12222 378999999854
No 209
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.88 E-value=0.00027 Score=74.44 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=40.3
Q ss_pred ccccccCCcccccch--hHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 205 PLVKTVMTRCIQCTR--CVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 205 p~i~~d~~rCI~C~r--Cvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
+.+.+..++|+||+. |+.+||.- .++.....| .+....+ .|..|+.|+++||.+|+...
T Consensus 84 ~~~~~~~~~C~hC~~p~Cv~aCP~~---gA~~~~~~G---~V~id~d---kCigC~~Cv~aCP~~a~~~~ 144 (283)
T TIGR01582 84 LEWLIRKDGCMHCREPGCLKACPAP---GAIIQYQNG---IVDFDHS---KCIGCGYCIVGCPFNIPRYD 144 (283)
T ss_pred ceEEECCccCCCCCCccccCCCCcC---CeEEEcCCC---cEEEeHH---HCCcchHHHhhCCCCCcEEc
Confidence 344567889999998 99999841 223221111 2333333 39999999999999998653
No 210
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.88 E-value=0.00047 Score=83.97 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=37.3
Q ss_pred cccCCccccc----chhHHHhhhhcCcceeeeec-CCCCceeeecccCCccccccccccccccCccc
Q 004627 208 KTVMTRCIQC----TRCVRFATEVAGVQDLGMLG-RGSGEEIGTYVEKLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 208 ~~d~~rCI~C----~rCvr~C~~i~g~~~l~~~~-r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl 269 (741)
..+.+||.+| +.|+.+||+-+... +...+ ++.+..+.. . ..|..||+|+.+||++|-
T Consensus 882 ~~~~~rC~~C~~~C~~C~~vCP~~A~~~-i~~~g~~~~~~~~~~-~---~~C~~CG~C~~~CP~~~~ 943 (1019)
T PRK09853 882 AQEAARCLECNYVCEKCVDVCPNRANVS-IAVPGFQNRFQIVHL-D---AMCNECGNCAQFCPWNGK 943 (1019)
T ss_pred cccccccCCcccccchhhhhCCcccccc-cccCCcccCCceEEc-C---ccCccccchhhhCCCCCC
Confidence 4578899999 99999999843211 22111 111222222 1 349999999999999884
No 211
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=96.86 E-value=0.00066 Score=65.15 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=44.4
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecc----cCCcccccc--ccccccccCcccccccccccccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV----EKLMTSELS--GNVIDICPVGALTSKPFAFKARN 280 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~----~~~~~c~~c--g~cv~vCP~gAl~~~~~~~~~r~ 280 (741)
|..+.++||+|..|..+|....+... . .......|.... .-+..|..| --|.++||+|||+...- ...-
T Consensus 5 i~~~~~~CigC~~Ce~aC~~ah~~~~--~-~~~~~pri~v~~~d~~~~pv~C~qCedaPC~~vCP~~AI~~~~~--~v~V 79 (165)
T COG1142 5 IIADPEKCIGCRTCEVACVVAHEEIQ--S-QSIFLPRIMVIKNDGESAPVVCHHCEDAPCAEVCPVGAITRDDG--AVQV 79 (165)
T ss_pred EEeCcccCCCccccHHHHHHhccccc--c-CccCCCceEEEccCCcccCCcCCCCCCcchhhhCchhheeecCC--ceEE
Confidence 66788889999999998876443332 0 001111111111 223345555 35778888888877731 1122
Q ss_pred cceeeeeecCCCCCCCCC
Q 004627 281 WELKGTETIDVTDAVGSN 298 (741)
Q Consensus 281 wel~~~~siC~~C~~gC~ 298 (741)
|+-+ --=|..|...|.
T Consensus 80 ~~ek--CiGC~~C~~aCP 95 (165)
T COG1142 80 DEEK--CIGCKLCVVACP 95 (165)
T ss_pred chhh--ccCcchhhhcCC
Confidence 2222 223555666674
No 212
>PRK09898 hypothetical protein; Provisional
Probab=96.85 E-value=0.00067 Score=68.72 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=40.6
Q ss_pred cccccCCcccccc--hhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 206 LVKTVMTRCIQCT--RCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 206 ~i~~d~~rCI~C~--rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
.+.++...|++|+ .|+++||. +++....+.. .+.... ..|..|+.|+++||.+|+...
T Consensus 115 ~~~~~~~~C~~C~~~~C~~~CP~----gAi~~~~~~g--~v~vd~---~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 115 DLNYTADTCRQCKEPQCMNVCPI----GAITWQQKEG--CITVDH---KRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred cEEEeCccCCCccCcchhhhCCc----ceEEeeccCC--eEEecc---ccCCCcCcccccCCCCCCEec
Confidence 3456788999998 99999985 4444432221 222222 249999999999999998643
No 213
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.84 E-value=0.00055 Score=83.69 Aligned_cols=61 Identities=20% Similarity=0.415 Sum_probs=38.8
Q ss_pred ccccCCcccc----cchhHHHhhhhcCc--ceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 207 VKTVMTRCIQ----CTRCVRFATEVAGV--QDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 207 i~~d~~rCI~----C~rCvr~C~~i~g~--~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
+..+.+||++ ||.|+.+||..+.. ...++. +....+. .+. .|..||+|+++||++|+.-+.
T Consensus 876 ~~~~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~--~~~~~i~--~d~--~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 876 PEQESQRCLECSYVCEKCVDVCPNRANIVIYVPGFR--DQFQIVH--LDG--MCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred cccccccccCCCCCCCChhhhCChhhhhcccccccc--CCceeee--cCc--cccccchHHHhCCCCccccee
Confidence 3446689996 99999999973210 011111 1111122 121 499999999999999987655
No 214
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=96.83 E-value=0.00041 Score=76.01 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=39.0
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccc---------cccccccCccccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSG---------NVIDICPVGALTSKP 273 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg---------~cv~vCP~gAl~~~~ 273 (741)
.+.+|.++||+|+.|+.+||. +++.+... ..+...|.+|. .|++.||++|+.--.
T Consensus 208 iV~ID~dkCiGCg~CV~ACPy----gAI~~n~~---------~g~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~fG~ 271 (492)
T TIGR01660 208 IVLIDQDKCRGWRMCISGCPY----KKIYFNWK---------TGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 271 (492)
T ss_pred eEEEehhhccChHHHHHhCCC----CCcEecCC---------CCccccCCCChhHHhCCCCCcchhhcChhhhhhhh
Confidence 345789999999999999986 33333221 12233599995 599999999976443
No 215
>PLN00192 aldehyde oxidase
Probab=96.81 E-value=0.0017 Score=82.58 Aligned_cols=103 Identities=21% Similarity=0.350 Sum_probs=76.8
Q ss_pred cEEEEECCEEEEe---CCCChHHHHHHHC-CCCcccc-ccCCCCCCccccCccEEEEc------C--CCcccccccCCC-
Q 004627 69 AIEVFVDGYPLKI---PKGFTVLQACEVA-GVDIPRF-CYHSRLSIAGNCRMCLVEVE------K--SPKPVASCAMPA- 134 (741)
Q Consensus 69 ~v~~~idg~~~~~---~~g~tvl~a~~~~-g~~ip~~-C~~~~l~~~G~C~~C~V~v~------~--~~~~~~aC~~~v- 134 (741)
.++|+|||+.+++ ++.+|||+.++.. |..-.++ | ..|-|+.|.|.|. | ..+++.||.+++
T Consensus 5 ~i~~~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC------~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~ 78 (1344)
T PLN00192 5 SLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGC------GEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLC 78 (1344)
T ss_pred eEEEEECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCC------CCCcCCCcEEEEeeccccccCcCCcEEehHHHHHH
Confidence 3899999999865 6999999999974 7665544 5 5699999999993 1 136789999999
Q ss_pred -CCCCEEEccchhHH-HH-HhHHHHHHHhhCCCCCCCcCCCCCChh
Q 004627 135 -LPGMKIKTDTPLAK-KA-REGVMEFLLMNHPLDCPICDQGGECDL 177 (741)
Q Consensus 135 -~~gm~v~t~~~~~~-~~-r~~~le~~l~~hp~dC~~C~~~gec~l 177 (741)
-+|..|.|-...-. .. -.-+-+.+..+|-..|..|.-|.-..+
T Consensus 79 ~~~g~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfCtpG~vms~ 124 (1344)
T PLN00192 79 SVNGCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISL 124 (1344)
T ss_pred HhCCCEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCCChHHHHHH
Confidence 68999998544321 11 133556678899999999998753333
No 216
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=96.79 E-value=0.00043 Score=56.30 Aligned_cols=59 Identities=29% Similarity=0.398 Sum_probs=34.3
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecc----cCCccc-cccccccccccCcccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV----EKLMTS-ELSGNVIDICPVGALT 270 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~----~~~~~c-~~cg~cv~vCP~gAl~ 270 (741)
|..|.++||+||.|+..||+ .+.+.+.|....+.... ..+..- ..--.=++.||++||+
T Consensus 1 V~vD~~~C~gcg~C~~~aP~-----vF~~d~~g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~ 64 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPE-----VFELDDDGKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIH 64 (65)
T ss_pred CEEecccCcCccHHHhhCCc-----cEEECCCCCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEE
Confidence 34689999999999999996 34444443221221100 001011 1123458999999985
No 217
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.75 E-value=0.00078 Score=76.32 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=40.9
Q ss_pred ccccccCCcccccchhHHH--hhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 205 PLVKTVMTRCIQCTRCVRF--ATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~--C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
|.+..|.++|.+|+.|++. ||. +..........|. +..|..||.|+++||..|+.+..
T Consensus 570 ~~~~Vd~~~CtGC~~C~~~~~Cps------i~~~~~~~k~~id-----~~~C~GCg~C~~iCP~~a~~~~~ 629 (640)
T COG4231 570 PKYFVDEEKCTGCGDCIVLSGCPS------IEPDPTFKKARID-----PSSCNGCGSCVEVCPSFAIKEGG 629 (640)
T ss_pred CCceechhhcCCcHHHHhhcCCce------EeecCCCCceeec-----ccccccchhhhhcCchhheeccc
Confidence 3356799999999999976 764 3332211112232 23499999999999999998776
No 218
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=96.75 E-value=0.0043 Score=50.53 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=46.1
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC--CcccccccCCCCCCCEEEc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS--PKPVASCAMPALPGMKIKT 142 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~--~~~~~aC~~~v~~gm~v~t 142 (741)
++|+|||+++++++|.||.+++...|+.- . ...|++|+. ++ ...|.+++++|++|.-
T Consensus 1 m~i~vNG~~~~~~~~~tl~~lL~~l~~~~-~--------------~vav~vNg~iv~r-~~~~~~~l~~gD~vei 59 (66)
T PRK05659 1 MNIQLNGEPRELPDGESVAALLAREGLAG-R--------------RVAVEVNGEIVPR-SQHASTALREGDVVEI 59 (66)
T ss_pred CEEEECCeEEEcCCCCCHHHHHHhcCCCC-C--------------eEEEEECCeEeCH-HHcCcccCCCCCEEEE
Confidence 36999999999999999999999998751 1 125899983 33 4579999999999874
No 219
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.72 E-value=0.00058 Score=43.81 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=15.7
Q ss_pred cccccccccccccCcccc
Q 004627 253 TSELSGNVIDICPVGALT 270 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~ 270 (741)
.|..||.|+++||++||+
T Consensus 7 ~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 7 KCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp TSSS-THHHHHSTTSSEE
T ss_pred HCCCcchhhhhcccccCC
Confidence 499999999999999985
No 220
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=96.72 E-value=0.00063 Score=69.77 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=38.7
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
.+|.++|++|++|+.+||. +++...+ + ...+ . ...|..||.|+++||++.+.+.
T Consensus 170 ~id~~~C~~C~~C~~aCP~----~ai~~~~-~-~~~i--~---~~~C~~C~~C~~~CP~~~~~~~ 223 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPT----RAIEMED-G-RPNV--N---RDRCIKCGACYVQCPRAFWPEY 223 (228)
T ss_pred EEChhhCcChhHHHHhCCH----hhEEEeC-C-cEEE--C---hhhccCHHHHHHHcCCCCcchh
Confidence 4689999999999999986 3344322 1 1111 1 2349999999999999887654
No 221
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.71 E-value=0.00047 Score=75.57 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=39.3
Q ss_pred ccccccCCcccccchhHHHhhh-hcCcceeeeecCCCCceeeecc-------cCCccccccccccccccCcccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATE-VAGVQDLGMLGRGSGEEIGTYV-------EKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~-i~g~~~l~~~~r~~~~~i~~~~-------~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
|.+. | ++|++||+|.++||- +......|+..|.. ..+.... .++..|..||.|.+.||-+|+.
T Consensus 219 pryV-d-d~CtgCg~C~~vCPve~~nefn~Gl~~~kA-iy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~ 289 (622)
T COG1148 219 PRYV-D-DKCTGCGACSEVCPVEVPNEFNEGLGKRKA-IYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVD 289 (622)
T ss_pred cccc-c-ccccccccccccCCcccCccccccccccee-eeccchhhcccccccChhhhccchhhhhcCCccccc
Confidence 4443 5 999999999999984 22233344433321 1111111 2333599999999999988874
No 222
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.69 E-value=0.00072 Score=67.14 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=49.7
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecc-----------cCCccccccc--cccccccCcccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV-----------EKLMTSELSG--NVIDICPVGALTSK 272 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~-----------~~~~~c~~cg--~cv~vCP~gAl~~~ 272 (741)
.+.+|.+|||+|..|+-+|.+.-....++.. ..+..+..+. ..+..|..|- -|+.||||||+.-.
T Consensus 12 ~~~~D~~rCiGC~aC~~AC~~~n~~~~~g~~--~~r~~v~~~~~~~~~~~~~~~~~~~~C~HC~~ppCv~vCPtgA~~k~ 89 (203)
T COG0437 12 AFVIDSSRCIGCKACVVACKEENDRLPVGNS--VFRRYVNYVEGDWGSGTVEYYYLSISCMHCEDPPCVKVCPTGALFKR 89 (203)
T ss_pred EEEEecccccCcHHHHHHHHHhccCCCCCcc--eeeEEEEecCCcCCCCcceEEEecccccCCCCCcccccCCCcceEEe
Confidence 4457999999999999999763311111110 0111111111 1123477775 59999999998644
Q ss_pred cccccccccceeeeeecC---CCCCCCCCceEee
Q 004627 273 PFAFKARNWELKGTETID---VTDAVGSNIRIDS 303 (741)
Q Consensus 273 ~~~~~~r~wel~~~~siC---~~C~~gC~i~v~v 303 (741)
.-. . =...-+..| .+|..+|...+-.
T Consensus 90 ~~d---G--iV~vd~d~CIGC~yCi~ACPyga~~ 118 (203)
T COG0437 90 EED---G--IVLVDKDLCIGCGYCIAACPYGAPQ 118 (203)
T ss_pred cCC---C--EEEecCCcccCchHHHhhCCCCCce
Confidence 300 0 011123344 5567888776543
No 223
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=96.65 E-value=0.00036 Score=66.40 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=35.2
Q ss_pred CcccccchhHHHhhhhcCcceeee------ecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 212 TRCIQCTRCVRFATEVAGVQDLGM------LGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 212 ~rCI~C~rCvr~C~~i~g~~~l~~------~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
++||.||.|..+||.... ..+.. .-.+....+ ...+..+.|..||.|..+||.|--...
T Consensus 2 ~~Ci~CG~C~~~CP~~~~-~~~~~~~~~~~~~~g~~~~~-~~~~~~~~C~~Cg~C~~~CP~~i~~~~ 66 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRR-TSYRTRLIIRKALLGLKDEV-ISDDDLWMCTTCYTCQERCPRDVKITD 66 (144)
T ss_pred ccccCCCCCcCcCCCccc-cCCCHHHHHHHHHccchhhh-ccCCCCCcCcCcCchhhhcCCCCCHHH
Confidence 589999999999996321 11100 000101111 111244579999999999999875543
No 224
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.58 E-value=0.00085 Score=79.66 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=21.5
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
..+-++++|+-|..-. ....++ +.|.+|++++..
T Consensus 309 ~~kkVaIIG~GpaGl~--aA~~L~----~~G~~Vtv~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPAGLG--CADILA----RAGVQVDVFDRH 342 (639)
T ss_pred CCCEEEEECcCHHHHH--HHHHHH----HcCCcEEEEeCC
Confidence 4678999999764322 112222 368899998754
No 225
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=96.56 E-value=0.00097 Score=58.82 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=36.3
Q ss_pred cccCCcccccc--hhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccccc
Q 004627 208 KTVMTRCIQCT--RCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 208 ~~d~~rCI~C~--rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.+....|.||. .|+++||. +++...... ..+....++ |..||.|+.+||.||+...+
T Consensus 3 ~~~~~~C~hC~~ppC~~~CP~----~Ai~~~~~~--G~V~id~~~---CigC~~C~~aCP~~ai~~~~ 61 (98)
T PF13247_consen 3 EFVPVQCRHCEDPPCVEACPT----GAIYKDPED--GIVVIDEDK---CIGCGYCVEACPYGAIRFDP 61 (98)
T ss_dssp EEEEEC---BSS-HHHHHCTT----TSEEEETTT--S-EEE-TTT---CCTHHHHHHH-TTS-EEEET
T ss_pred eEeCCcCcCcCCCchhhhCCc----cceEEEcCC--CeEEechhh---ccCchhhhhhhccCcceeec
Confidence 45678899998 89999986 566543311 234444444 99999999999999997554
No 226
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=96.50 E-value=0.00082 Score=75.79 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=34.3
Q ss_pred ccCCcccccchhHHHhhhhcCcceeee-ecCCCCceeeecccCCccccccccccccccCcc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGM-LGRGSGEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~-~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
.+.++||+||+|+.+||.......+.. ...+..... .......|..||.|..+||.+-
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~p~~l~~~~~~~~~~~~--~~~~~~~C~~Cg~C~~vCP~~i 418 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEA--EEHNLMDCIECGCCSYVCPSNI 418 (435)
T ss_pred ccCCcCcCccchhhhCccchhhHHHHHHhhhcccchh--hcCCCCcCCcCCCcccccCCCC
Confidence 356899999999999986321111110 000110000 1122346999999999999974
No 227
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=96.21 E-value=0.0015 Score=53.09 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=18.4
Q ss_pred ccccCCcccccchhHHHhhhh
Q 004627 207 VKTVMTRCIQCTRCVRFATEV 227 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i 227 (741)
+..|.++||+||.|..+||++
T Consensus 3 v~vDrd~Cigcg~C~~~aPdv 23 (68)
T COG1141 3 VIVDRDTCIGCGACLAVAPDV 23 (68)
T ss_pred EEechhhccccchhhhcCCcc
Confidence 456899999999999999974
No 228
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.20 E-value=0.001 Score=42.64 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=15.9
Q ss_pred cccccccccccccCccc
Q 004627 253 TSELSGNVIDICPVGAL 269 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl 269 (741)
.|..||.|+.+||.+||
T Consensus 8 ~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 8 KCIGCGDCVRVCPEGAI 24 (24)
T ss_pred hCcChhHHHHhcchhcC
Confidence 49999999999999987
No 229
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.19 E-value=0.0047 Score=67.64 Aligned_cols=93 Identities=20% Similarity=0.302 Sum_probs=58.2
Q ss_pred ccCCcccc--c-chhHHHhhhh-cCcceeeeecCCCCceeeecccCCccccccccccccccCccccccccccccccccee
Q 004627 209 TVMTRCIQ--C-TRCVRFATEV-AGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELK 284 (741)
Q Consensus 209 ~d~~rCI~--C-~rCvr~C~~i-~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~ 284 (741)
.|.+||-- | ..|+++||-+ .|...+.+.+......| ..+ -|..||-|+.-||.+||+.-.. |-||+
T Consensus 8 vd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkpvI--sE~---lCiGCGICvkkCPF~AI~IvnL-----P~eLe 77 (591)
T COG1245 8 VDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKPVI--SEE---LCIGCGICVKKCPFDAISIVNL-----PEELE 77 (591)
T ss_pred eehhccCccccchhhhhcCCCccCCCeeEEecCCCCCcee--Ehh---hhccchhhhccCCcceEEEecC-----chhhc
Confidence 46666752 3 6899999964 34455555443222222 112 3999999999999999987663 44554
Q ss_pred eeeecCCCCCCCCCceEe----eeCCEEEEEcCC
Q 004627 285 GTETIDVTDAVGSNIRID----SRGPEVMRILPR 314 (741)
Q Consensus 285 ~~~siC~~C~~gC~i~v~----vrdg~V~rI~p~ 314 (741)
.- |.|=..--+++++ .+.|+|+.|.|.
T Consensus 78 ~e---~vHRYg~NgFkL~~LP~pr~G~V~GilG~ 108 (591)
T COG1245 78 EE---VVHRYGVNGFKLYRLPTPRPGKVVGILGP 108 (591)
T ss_pred cc---ceeeccCCceEEecCCCCCCCcEEEEEcC
Confidence 33 3332223345544 478999999884
No 230
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=96.06 E-value=0.0014 Score=73.27 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=36.3
Q ss_pred ccCCcccccchhHHHhhhhcCccee----eeecCCCCceee---ecccCCccccccccccccccCcc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDL----GMLGRGSGEEIG---TYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l----~~~~r~~~~~i~---~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
...++||+||.|..+||........ ....++....+. ........|..||.|.++||.+-
T Consensus 4 ~~~~~Ci~Cg~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 4 TSFDSCIKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred cchhhcCCCCCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCCC
Confidence 3568899999999999975432110 011111111110 11123346999999999999986
No 231
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=95.93 E-value=0.0022 Score=69.65 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=35.0
Q ss_pred ccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 214 CIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 214 CI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
|..|+.|+.+||. .++.+...+....+... ...|..||.|+.+||++|+...
T Consensus 183 ~c~~~~Cv~~CP~----~Ai~~~~~~~~~~~~id---~~~Ci~Cg~Ci~~CP~~a~~~~ 234 (341)
T TIGR02066 183 VCEIPSVVAACPT----GALKPRRDGKNKSLEVD---VEKCIYCGNCYTMCPAMPIFDP 234 (341)
T ss_pred hcCCCceEeeCch----hhceecccCCCCceeec---cccCCcCCchHHhCchhhccCC
Confidence 6677999999987 45554221111223332 2349999999999999999744
No 232
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=95.67 E-value=0.0027 Score=70.98 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCcccccchhHHHhhhhcCccee-e---eecCCCCceeee---cccCCccccccccccccccCcccc
Q 004627 211 MTRCIQCTRCVRFATEVAGVQDL-G---MLGRGSGEEIGT---YVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~g~~~l-~---~~~r~~~~~i~~---~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
.++||+||.|..+||...-...+ + ...|+....+.. +.+....|..||.|..+||++--.
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i~~ 70 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDVKI 70 (397)
T ss_pred hhhCCCCCCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCCCCH
Confidence 47899999999999975322110 1 111111111111 112344699999999999998543
No 233
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=95.66 E-value=0.0016 Score=72.44 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=37.9
Q ss_pred cccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccc
Q 004627 213 RCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPF 274 (741)
Q Consensus 213 rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~ 274 (741)
-||.|+.|+++||-..--..|....++. .+........++|..||.|.-+||.+==..+-+
T Consensus 366 sCi~C~~C~d~CP~~Llp~ql~~~a~~~-~~~e~~~~~l~dCIECg~Ca~vCPs~iplvq~~ 426 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQLYWFAKGE-QHDEEEEHNLLDCIECGACAYVCPSNIPLVQYF 426 (529)
T ss_pred ccccHHHHHHhCccccCHHHhhHHhhhh-hhhHHHHHHhhhhhhhCcchhcCCCCCCHHHHH
Confidence 7999999999998643333333322221 111111123457999999999999886444443
No 234
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=95.54 E-value=0.0057 Score=66.17 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=18.2
Q ss_pred cccccccCCcccccchhHHHhhh
Q 004627 204 GPLVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 204 ~p~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.++..-..+|||.||.|.-+||.
T Consensus 218 ~~~w~~~~~rCi~Cg~C~~~CPt 240 (344)
T PRK15055 218 HDLWDEYDSRCIACGRCNFVCPT 240 (344)
T ss_pred hHHHHHHHhhCccCccccccCCc
Confidence 34444456799999999999996
No 235
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=95.43 E-value=0.067 Score=50.03 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=52.9
Q ss_pred EEEE---ECCE--EEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcC----------------------
Q 004627 70 IEVF---VDGY--PLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK---------------------- 122 (741)
Q Consensus 70 v~~~---idg~--~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~---------------------- 122 (741)
|+|+ -||+ ++++..|+|||+++.++|++++--|- ..-.|-.|-|.|+.
T Consensus 44 i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACE-----gslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~g 118 (159)
T KOG3309|consen 44 IKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACE-----GSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFG 118 (159)
T ss_pred EEEEEECCCCCEEEeeeecchHHHHHHHHcCCCcccccc-----ccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhc
Confidence 6644 3664 46678999999999999999999884 55789999999941
Q ss_pred C-CcccccccCCC---CCCCEEEccc
Q 004627 123 S-PKPVASCAMPA---LPGMKIKTDT 144 (741)
Q Consensus 123 ~-~~~~~aC~~~v---~~gm~v~t~~ 144 (741)
. ..-++.||..+ .+||+|...+
T Consensus 119 Lt~tSRLGCQI~l~keldG~~v~vP~ 144 (159)
T KOG3309|consen 119 LTETSRLGCQIVLTKELDGMRVAVPE 144 (159)
T ss_pred cccccccceEEEeccccCCcEEECcc
Confidence 0 12367888766 5789988654
No 236
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=95.42 E-value=0.005 Score=65.16 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCcccccchhHHHhhhhcCcceeeeecCCCCceeeec---------ccCCcccc-ccccccccccCccc
Q 004627 211 MTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTY---------VEKLMTSE-LSGNVIDICPVGAL 269 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~---------~~~~~~c~-~cg~cv~vCP~gAl 269 (741)
.+.|..|++|+++||.-+....-.+..+.=...+... ......|. .|+.|.++||.+..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~sy~ti~~~~~~~~~~~~~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCISYLTIEKDAALPKEFASNCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHHHHhcccCCCcCCHHHHHHhcCcccCCCCccccCCCCCC
Confidence 5789999999999987332111001000000010000 01122465 69999999999963
No 237
>PRK13409 putative ATPase RIL; Provisional
Probab=95.30 E-value=0.01 Score=69.69 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=54.7
Q ss_pred ccCCccc--cc-chhHHHhhhh-cCcceeeeecCCCCceeeecccCCccccccccccccccCccccccccccccccccee
Q 004627 209 TVMTRCI--QC-TRCVRFATEV-AGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELK 284 (741)
Q Consensus 209 ~d~~rCI--~C-~rCvr~C~~i-~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~ 284 (741)
.|.+||- .| ..|.++||-+ .|...+.+.+......| +.+ -|..||-||.-||.+||+.-.. |-|+.
T Consensus 7 ~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~--~e~---~c~~c~~c~~~cp~~a~~i~~~-----p~~~~ 76 (590)
T PRK13409 7 VDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVI--SEE---LCIGCGICVKKCPFDAISIVNL-----PEELE 76 (590)
T ss_pred eeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCcee--eHh---hccccccccccCCcceEEEeeC-----chhhc
Confidence 3556665 35 5799999964 45455555333322222 222 2999999999999999987764 33333
Q ss_pred ee--eecCCCCCCCCCceEeeeCCEEEEEcCC
Q 004627 285 GT--ETIDVTDAVGSNIRIDSRGPEVMRILPR 314 (741)
Q Consensus 285 ~~--~siC~~C~~gC~i~v~vrdg~V~rI~p~ 314 (741)
.- ...-..=..=-++. .++.|+++-+.|.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~ 107 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGP 107 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECC
Confidence 21 11111000112344 4678888888774
No 238
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=95.28 E-value=0.0022 Score=71.27 Aligned_cols=56 Identities=14% Similarity=0.316 Sum_probs=38.1
Q ss_pred cCCcccccchhHHHhhhh-cCcceeeeecCCCCceeeecccCCccccccccccccccCcc
Q 004627 210 VMTRCIQCTRCVRFATEV-AGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i-~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
...+|..||-|.++||+- ....++.....|+........ ..|..||.|.++||.+-
T Consensus 398 ~a~kc~~cG~C~~~CP~~l~i~eam~~A~~Gd~~~l~~l~---d~C~~C~rCEq~Cpk~i 454 (772)
T COG1152 398 YARKCTYCGNCMRACPNELDIPEAMEYAAKGDFSKLEDLH---DVCIGCGRCEQVCPKNI 454 (772)
T ss_pred HHHhcccccchhccCCcccchHHHHHHhhcCChHHHHHHH---HHhhhhhhhhhhCcccC
Confidence 468999999999999972 233445444445433322221 24999999999999763
No 239
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=95.18 E-value=0.0046 Score=47.73 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=22.4
Q ss_pred cccccccccccccCcccccccccccccccceeeeeecCCCCC
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDA 294 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~ 294 (741)
.|+.||.|+++||++||.........+-..+......|.+|+
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~ 42 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCG 42 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----S
T ss_pred CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcC
Confidence 389999999999999999877533332233444566676664
No 240
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=95.05 E-value=0.13 Score=54.75 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCcceeecCchhhhhhhhhcCCCCCCC-CCccC
Q 004627 495 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESS-NSIES 573 (741)
Q Consensus 495 i~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~~l~~~~~~~g~~~~g~~p~~~-~~~~~ 573 (741)
|++.|+.|.++|+|++.-+.... -+.......|+..+|.+-..-..+. ......|..+.|...... ....+
T Consensus 69 ie~Aa~ILv~aKrPllyg~s~ts-----cEA~~~gielaE~~gaviD~~asvc---hGp~~~alqe~g~p~~TlgevKNr 140 (429)
T COG1029 69 IEKAAEILVNAKRPLLYGWSSTS-----CEAQELGIELAEKLGAVIDSNASVC---HGPSVLALQEAGKPTATLGEVKNR 140 (429)
T ss_pred HHHHHHHHHhccCceEeccccch-----HHHHHHHHHHHHHhCcEecCCCccc---cchHHHHHHhcCCcccchhhhccc
Confidence 56789999999999876554432 3455666788888876421111111 122334445555432221 13456
Q ss_pred ceEEEEeccCccC-------------c----cCCCCCCeEEEEcccCCccccccceecc
Q 004627 574 AKFVYLMGADDVD-------------L----EKLPNDAFVVYQGHHGDHGVYRANVILP 615 (741)
Q Consensus 574 ik~l~l~g~np~~-------------~----~al~k~~fvV~~d~~~~eta~~ADvVLP 615 (741)
.++++.||+||+. + +.=++...+|+.|+..|+||..||+.+-
T Consensus 141 aDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~q 199 (429)
T COG1029 141 ADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQ 199 (429)
T ss_pred ccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEe
Confidence 7789999999953 0 1114567799999999999999998764
No 241
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=95.05 E-value=0.0032 Score=70.64 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=34.3
Q ss_pred cCCcccccchhHHHhhhhcCcc--eeeeecCCC------C-ceeee-cccCCccccccccccccccCcc
Q 004627 210 VMTRCIQCTRCVRFATEVAGVQ--DLGMLGRGS------G-EEIGT-YVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i~g~~--~l~~~~r~~------~-~~i~~-~~~~~~~c~~cg~cv~vCP~gA 268 (741)
..++||+||.|..+||...-.. ..+..+|-. + ..... ..+....|..||.|..+||+|-
T Consensus 21 ~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 21 ILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSGV 89 (407)
T ss_pred HHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccchhhccccccCccccchhhhCCCCC
Confidence 4578999999999999643211 112111100 0 00000 0112346999999999999974
No 242
>PRK07440 hypothetical protein; Provisional
Probab=94.97 E-value=0.1 Score=43.09 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.5
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC--CcccccccCCCCCCCEEEc
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS--PKPVASCAMPALPGMKIKT 142 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~--~~~~~aC~~~v~~gm~v~t 142 (741)
+++|+|||++++++++.||.+.+...++. -....|++|+. ++ ..--.+.+++|.+|.-
T Consensus 4 ~m~i~vNG~~~~~~~~~tl~~lL~~l~~~---------------~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEI 63 (70)
T PRK07440 4 PITLQVNGETRTCSSGTSLPDLLQQLGFN---------------PRLVAVEYNGEILHR-QFWEQTQVQPGDRLEI 63 (70)
T ss_pred ceEEEECCEEEEcCCCCCHHHHHHHcCCC---------------CCeEEEEECCEEeCH-HHcCceecCCCCEEEE
Confidence 48999999999999999999999998874 23458999984 22 2236778889988763
No 243
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=94.95 E-value=0.0051 Score=35.95 Aligned_cols=14 Identities=43% Similarity=1.061 Sum_probs=8.3
Q ss_pred CcccccchhHHHhh
Q 004627 212 TRCIQCTRCVRFAT 225 (741)
Q Consensus 212 ~rCI~C~rCvr~C~ 225 (741)
++||+|+.|+.+||
T Consensus 2 ~~C~~C~~C~~~Cp 15 (17)
T PF12800_consen 2 ERCIGCGSCVDVCP 15 (17)
T ss_dssp CCCTTSSSSTTTST
T ss_pred CcCCCCchHHhhcc
Confidence 45666666666665
No 244
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.78 E-value=0.031 Score=58.89 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=55.9
Q ss_pred cccccccccccccCcccccccccccccccceeeeeecCCCC---CCCCCceEee--eCCEEEEEcCCCCCCCCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTD---AVGSNIRIDS--RGPEVMRILPRLNEDINEEWISDK 327 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C---~~gC~i~v~v--rdg~V~rI~p~~~~~~n~g~iC~K 327 (741)
.|..||.|+++||+|||+-.. -+++...+-|..| -..|...+.- +.|-.+.|-|+.
T Consensus 173 ~c~gc~~cv~~C~~gAI~~~~-------~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~------------ 233 (317)
T COG2221 173 LCRGCGKCVKVCPTGAITWDG-------KKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKT------------ 233 (317)
T ss_pred HhchhHhHHHhCCCCceeecc-------ceEEEehhhccCccHHhhhCChhhcchhhccEEEEEcccc------------
Confidence 388999999999999998554 3567777778665 4668732221 233444453431
Q ss_pred cccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhc
Q 004627 328 TRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQA 371 (741)
Q Consensus 328 Gr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i 371 (741)
||. +.|.-.||+-. + +|||+++.|-+.+.-.
T Consensus 234 Gr~------~~r~g~~~~~~-----~--~~dei~~ii~~~~e~~ 264 (317)
T COG2221 234 GRE------LGRVGKPLVPV-----E--DEDEIIDIIKKTIEVW 264 (317)
T ss_pred CCc------ccccccccccc-----C--CHHHHHHHHHHHHHHH
Confidence 222 33555566643 2 8999999888777543
No 245
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=94.39 E-value=0.0016 Score=52.13 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=22.0
Q ss_pred cccccchhHHHhhhhcCcce--eeeec---CCCCceeeecccCCccccccccccccccCc
Q 004627 213 RCIQCTRCVRFATEVAGVQD--LGMLG---RGSGEEIGTYVEKLMTSELSGNVIDICPVG 267 (741)
Q Consensus 213 rCI~C~rCvr~C~~i~g~~~--l~~~~---r~~~~~i~~~~~~~~~c~~cg~cv~vCP~g 267 (741)
+|++||.|+.+||....... ..+.. .+....+ ........|..||.|..+||.|
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPDEPRSPMRAIYLGKIDEI-SESHAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp T----STTGGGSHHHHHCTTTHHHHHHHHHHCHCHTT-HHHTTTTT--S--HHHHH-TT-
T ss_pred CCCCCCcCcccCCCccccCccHHHHHHHHHHhcchhh-hhCcccccCcCcCcCcccccCC
Confidence 59999999999997332110 00000 0000000 0113445799999999999986
No 246
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=94.38 E-value=0.14 Score=41.61 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=45.1
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC--CcccccccCCCCCCCEEEc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS--PKPVASCAMPALPGMKIKT 142 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~--~~~~~aC~~~v~~gm~v~t 142 (741)
++|+|||++.+++++.||.+.+...|+.. ....|++|+. ++-..+ . .+++|.+|.-
T Consensus 1 m~i~vNG~~~~~~~~~tl~~ll~~l~~~~---------------~~vav~~N~~iv~r~~~~-~-~L~~gD~ieI 58 (65)
T PRK05863 1 MIVVVNEEQVEVDEQTTVAALLDSLGFPE---------------KGIAVAVDWSVLPRSDWA-T-KLRDGARLEV 58 (65)
T ss_pred CEEEECCEEEEcCCCCcHHHHHHHcCCCC---------------CcEEEEECCcCcChhHhh-h-hcCCCCEEEE
Confidence 36899999999999999999999998752 2458999997 665555 4 5899988863
No 247
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.17 E-value=0.021 Score=32.24 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=12.2
Q ss_pred ccccchhHHHhhh
Q 004627 214 CIQCTRCVRFATE 226 (741)
Q Consensus 214 CI~C~rCvr~C~~ 226 (741)
|++|+.|+.+||.
T Consensus 1 C~~C~~C~~~Cp~ 13 (15)
T PF12798_consen 1 CTGCGACVEVCPT 13 (15)
T ss_pred CCCchHHHHHhcC
Confidence 8999999999986
No 248
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=94.14 E-value=0.18 Score=40.96 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=43.0
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccc-cccCCCCCCCEEEc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVA-SCAMPALPGMKIKT 142 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~-aC~~~v~~gm~v~t 142 (741)
++|+|||++++++++.||.+.+...++..+ .+.|++|+.-=+.- -=.+.+++|.+|..
T Consensus 1 m~i~vNg~~~~~~~~~tl~~ll~~l~~~~~---------------~vaVavN~~iv~r~~w~~~~L~~gD~Iei 59 (66)
T PRK08053 1 MQILFNDQPMQCAAGQTVHELLEQLNQLQP---------------GAALAINQQIIPREQWAQHIVQDGDQILL 59 (66)
T ss_pred CEEEECCeEEEcCCCCCHHHHHHHcCCCCC---------------cEEEEECCEEeChHHcCccccCCCCEEEE
Confidence 368999999999999999999998887532 27899998411111 23457889988864
No 249
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=94.12 E-value=0.025 Score=60.78 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=14.9
Q ss_pred CCcccccchhHHHhhhh
Q 004627 211 MTRCIQCTRCVRFATEV 227 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i 227 (741)
.+.|..|++|+++||.-
T Consensus 204 ~~fC~~C~~C~~~CP~~ 220 (314)
T TIGR02486 204 AKFCETCGKCADECPSG 220 (314)
T ss_pred cccCcchhHHHhhCCcc
Confidence 47899999999999873
No 250
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=93.86 E-value=0.015 Score=47.37 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=18.2
Q ss_pred ccccccccccccCcccccc
Q 004627 254 SELSGNVIDICPVGALTSK 272 (741)
Q Consensus 254 c~~cg~cv~vCP~gAl~~~ 272 (741)
|..||.|+++||++||..+
T Consensus 2 C~~C~~C~~~CP~~AI~~~ 20 (67)
T PF13484_consen 2 CITCGKCAEACPTGAISGE 20 (67)
T ss_pred CcchhHHHHhCcHhhccCC
Confidence 8899999999999999988
No 251
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=93.82 E-value=0.034 Score=59.95 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=17.5
Q ss_pred ccccccCCcccccchhHHHhhh
Q 004627 205 PLVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~ 226 (741)
|+..-...|||.||.|..+||.
T Consensus 213 ~~w~~~~~rCi~C~~C~~~CPt 234 (334)
T TIGR02910 213 DFWDEYDSRCIACGRCNTVCPT 234 (334)
T ss_pred HHHHHHHhhCCcCccccccCCc
Confidence 4444447899999999999985
No 252
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=93.68 E-value=0.0062 Score=67.71 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=38.6
Q ss_pred cCCcccccchhHHHhhhhcCcceeeeecCCCCceee-----------ecccCCccccccccccccccCccccccc
Q 004627 210 VMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIG-----------TYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~-----------~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
..++|++||.|..+||.......+. .|+....+. ........|..|+.|++.||.+--...-
T Consensus 7 ~~~~Cv~Cg~C~~~CP~~~~~~~~s--Prgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i~~~~~ 79 (388)
T COG0247 7 SLDKCVHCGFCTNVCPSYRATEALS--PRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGIDIGDL 79 (388)
T ss_pred HHHhcCCCCcccCcCCCccccCCCC--CchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCCcHHHH
Confidence 4678999999999999755442222 222110110 0011123599999999999999755443
No 253
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=93.57 E-value=0.29 Score=41.88 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=45.0
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC--CcccccccCCCCCCCEEEc
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS--PKPVASCAMPALPGMKIKT 142 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~--~~~~~aC~~~v~~gm~v~t 142 (741)
+++|+|||++++++++.||.+.+...++. -..+.|++|+. |+ -.=-++.+++|.+|.-
T Consensus 18 ~m~I~VNG~~~~~~~~~tl~~LL~~l~~~---------------~~~vAVevNg~iVpr-~~w~~t~L~egD~IEI 77 (84)
T PRK06083 18 LITISINDQSIQVDISSSLAQIIAQLSLP---------------ELGCVFAINNQVVPR-SEWQSTVLSSGDAISL 77 (84)
T ss_pred eEEEEECCeEEEcCCCCcHHHHHHHcCCC---------------CceEEEEECCEEeCH-HHcCcccCCCCCEEEE
Confidence 38999999999999999999999987754 24458999985 33 2345677888887763
No 254
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=93.56 E-value=0.038 Score=53.83 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=32.4
Q ss_pred ccccccccccccCccccccccccc----ccccceeeeeecCCC---CCCCCCceE
Q 004627 254 SELSGNVIDICPVGALTSKPFAFK----ARNWELKGTETIDVT---DAVGSNIRI 301 (741)
Q Consensus 254 c~~cg~cv~vCP~gAl~~~~~~~~----~r~wel~~~~siC~~---C~~gC~i~v 301 (741)
|+.|+.|+.+||++||+.....-. .+++-.+.-.+-|.+ |-.-|....
T Consensus 57 CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~A 111 (172)
T COG1143 57 CIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGA 111 (172)
T ss_pred CcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhh
Confidence 999999999999999998775332 234444444445544 445676543
No 255
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=93.52 E-value=1.3 Score=42.85 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=66.3
Q ss_pred HHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcc--------hhhhhhhcC--cccCCCcccc--
Q 004627 364 VAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA--------QSNADLRSG--YIMNTSISGL-- 430 (741)
Q Consensus 364 iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~di-- 430 (741)
+++.|++. .+..++.|+.. ..+....+.+|++++|.+.+.+....- .....++.. +.....++.+
T Consensus 20 aa~lLk~A--KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g 97 (162)
T TIGR00315 20 VAMMIKRA--KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDG 97 (162)
T ss_pred HHHHHHcC--CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccC
Confidence 34455554 45667777544 334556688899999887765543200 000111111 1112345556
Q ss_pred -ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc
Q 004627 431 -EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 481 (741)
Q Consensus 431 -~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l 481 (741)
.++|+||++|++...+.-++ .-+++. ...|.|.+|+.+.+.++..+.
T Consensus 98 ~g~~DlvlfvG~~~y~~~~~l-s~lk~f---~~~~~i~l~~~y~pnA~~Sf~ 145 (162)
T TIGR00315 98 EGNYDLVLFLGIIYYYLSQML-SSLKHF---SHIVTIAIDKYYQPNADYSFP 145 (162)
T ss_pred CCCcCEEEEeCCcchHHHHHH-HHHHhh---cCcEEEEecCCCCCCCceecc
Confidence 79999999999985444322 223332 368999999988888777663
No 256
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=93.04 E-value=1.8 Score=42.19 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=67.2
Q ss_pred HHHHHHhcCCCcEEEEECCCC-C-HHHHHHHHHHHHHcCCCcccCCCCcc---hhh-----hhhhcC--cccCCCcccc-
Q 004627 364 VAEVMLQAKPEEIVGIAGRLS-D-AESMMALKDFLNRMGSNNVWCEGTGA---QSN-----ADLRSG--YIMNTSISGL- 430 (741)
Q Consensus 364 iA~~Lk~i~~~~i~~~~g~~~-~-~e~~~~~~~l~~~lGs~~~~~~~~~~---~~~-----~~~~~~--~~~~~~~~di- 430 (741)
+++.|++. ++..++.|+.. . .+..-.+.+|++++|.+.+.+....- +.+ ..++.. +.....++.+
T Consensus 27 aa~lI~~A--KrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~ 104 (171)
T PRK00945 27 AAMMIKKA--KRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLD 104 (171)
T ss_pred HHHHHHhC--CCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhc
Confidence 34555554 45666776543 3 45556788899999887765544211 000 011111 1112344555
Q ss_pred --ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCccccccCCCH
Q 004627 431 --EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGP 485 (741)
Q Consensus 431 --~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~lG~d~ 485 (741)
.++|+||++|++.... +.-++--+.-...|.|.|+..+.+.++..+...+.
T Consensus 105 g~~~~DlvlfvG~~~~~~----~~~l~~lk~f~~~~~~~~~~~y~~~a~~s~~~~~~ 157 (171)
T PRK00945 105 GNGNYDLVIFIGVTYYYA----SQGLSALKHFSPLKTITIDRYYHPNADMSFPNLSK 157 (171)
T ss_pred CCCCcCEEEEecCCchhH----HHHHHHHhhcCCceEEEecCCcCCCCceecCCCCH
Confidence 6999999999997443 33333222224489999999888887776644443
No 257
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=93.03 E-value=0.28 Score=39.56 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=43.2
Q ss_pred EEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcc-cccccCCCCCCCEEEc
Q 004627 72 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-VASCAMPALPGMKIKT 142 (741)
Q Consensus 72 ~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~-~~aC~~~v~~gm~v~t 142 (741)
|+|||++++.+++.||.+.+...++. | ..+.|++|+.--+ -.--.+.+++|.+|..
T Consensus 1 i~iNg~~~~~~~~~tv~~ll~~l~~~-~--------------~~v~v~vN~~iv~~~~~~~~~L~~gD~vei 57 (64)
T TIGR01683 1 ITVNGEPVEVEDGLTLAALLESLGLD-P--------------RRVAVAVNGEIVPRSEWDDTILKEGDRIEI 57 (64)
T ss_pred CEECCeEEEcCCCCcHHHHHHHcCCC-C--------------CeEEEEECCEEcCHHHcCceecCCCCEEEE
Confidence 57999999999999999999999865 1 4468999994211 1245678899988864
No 258
>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]
Probab=92.96 E-value=0.076 Score=46.15 Aligned_cols=55 Identities=13% Similarity=0.313 Sum_probs=43.3
Q ss_pred eeecCCCCCCCCCceEeeeCCEEEEEcCCCCCCCCccccccccc-cccccC-CCCCCCCcEEeCCCCCe
Q 004627 286 TETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTR-FCYDGL-KSQRLNDPMIRGADGRF 352 (741)
Q Consensus 286 ~~siC~~C~~gC~i~v~vrdg~V~rI~p~~~~~~n~g~iC~KGr-~~~~~l-~~~RL~~PliR~g~g~~ 352 (741)
.+-+|..|..||.|.|+. .+.+|.|+ -|+||. ++.+.+ +|.|+.+-.+|..+|+.
T Consensus 3 ~~~iCi~CP~gC~i~Ve~---~~~~v~Gn---------~CPRG~ey~~~Ei~~pkrvvts~VrV~ng~~ 59 (117)
T COG3862 3 KEVICIVCPIGCHIKVEL---HIKSVKGN---------RCPRGVEYGKEEITSPKRVVTSTVRVKNGEL 59 (117)
T ss_pred eEEEEEEcCCccEEEEEE---EEEEEecC---------cCCchhhhhHhhhcCcceEEEEEEEEcCCcc
Confidence 456899999999999997 68888775 699996 556666 49999999988754443
No 259
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=92.67 E-value=0.057 Score=41.53 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=13.5
Q ss_pred cccccCCcccccchhHHHhh
Q 004627 206 LVKTVMTRCIQCTRCVRFAT 225 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~ 225 (741)
.+.++.++||+||+|+.+||
T Consensus 33 ~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 33 KVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp SEEE-TTT--TTSHHHHH-T
T ss_pred CeEeCcccccccChhhhhCc
Confidence 44458999999999999997
No 260
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=92.50 E-value=0.11 Score=45.38 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=35.6
Q ss_pred ccccccC--CcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 205 PLVKTVM--TRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 205 p~i~~d~--~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
|.|..+. ++|. =..|+.+||. +++...+.| .+....+. |..||.|+-+||.+++.
T Consensus 23 ~HI~i~~~~~~~~-~k~C~~aCPa----gA~~~~e~G---~V~vd~e~---CigCg~C~~~C~~~~~~ 79 (95)
T PRK15449 23 PHIVVKADADKQA-LELLVKACPA----GLYKKQDDG---SVRFDYAG---CLECGTCRILGLGSALE 79 (95)
T ss_pred CcEEEcCCCCchh-hhHHHHHCCH----hhcEeCCCC---CEEEcCCC---CCcchhhhhhcCCCCcc
Confidence 4444443 3442 2579999986 455433222 34444444 99999999999999976
No 261
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=92.35 E-value=0.044 Score=42.64 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.7
Q ss_pred cccccccccccccCcccccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKPFAF 276 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~ 276 (741)
.|+.||.|+++||++++.......
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~ 24 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGG 24 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTT
T ss_pred CCCCcchHHHHCCccCeEccCccc
Confidence 389999999999999998777543
No 262
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=92.19 E-value=0.071 Score=31.14 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.9
Q ss_pred cccccccccccccCc
Q 004627 253 TSELSGNVIDICPVG 267 (741)
Q Consensus 253 ~c~~cg~cv~vCP~g 267 (741)
.|..|+.|+++||++
T Consensus 3 ~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 3 RCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCTTSSSSTTTSTT-
T ss_pred cCCCCchHHhhccCC
Confidence 489999999999974
No 263
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=92.17 E-value=0.026 Score=61.08 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=33.5
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCC--CceeeecccCCccccccccccccccCcc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGS--GEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~--~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
...++|..|+.|.-+||-. .++. .|.. +.++.. ....|..||.|-..||.++
T Consensus 11 R~l~iC~~C~~C~~~Cpvf---Pa~~--~~~~~~~~d~~~---la~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 11 RVLNLCNSCGYCTGLCAVF---PAAQ--GRPDLTRGDLRH---LAHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HHhHhCcCcCCccccCCCc---cccc--cccccCHHHHHH---HHHHCcCcccccccCcCCC
Confidence 4568999999999999853 1111 1110 011111 1224999999999999987
No 264
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=92.16 E-value=0.05 Score=56.92 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=32.6
Q ss_pred ccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 214 CIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 214 CI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
-+.++-|..+||.-+-. +..++....++... +...|..||.|+++||++++.
T Consensus 168 ~~~r~~C~~~CP~Ga~~---~~~~~~~~~~i~~~--~~~~C~~C~~C~~vCP~~~vl 219 (255)
T TIGR02163 168 FSERGWCGHLCPLGAFY---GLIGRKSLIKIAAS--DREKCTNCMDCFNVCPEPQVL 219 (255)
T ss_pred hcCCchhhCcCCCcchh---hhhhccCceEEEee--ccccCeEcCCccCcCCCCcee
Confidence 34568899999862221 22333333334332 233599999999999999853
No 265
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=92.11 E-value=0.025 Score=63.70 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=32.1
Q ss_pred CCcccccchhHHHhhhhc-CcceeeeecCCCCceeeecccCCccccc--cccccccccCc
Q 004627 211 MTRCIQCTRCVRFATEVA-GVQDLGMLGRGSGEEIGTYVEKLMTSEL--SGNVIDICPVG 267 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~-g~~~l~~~~r~~~~~i~~~~~~~~~c~~--cg~cv~vCP~g 267 (741)
..-||.||+|+++||-.. +..-+.....++.... ..-..++|.. ||.|.-|||..
T Consensus 373 ~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~~~--e~~~~~~C~EedCG~CsyVCPsk 430 (448)
T PRK05352 373 ERAMVPIGNYERVMPLDILPTQLLRALIVGDTDEA--QALGALELDEEDLALCTFVCPGK 430 (448)
T ss_pred CcceeecCcHhhcCCCCCCHHHHHHHHHcCCHHHH--HHcCchhcCccccCCCccCCCCC
Confidence 458999999999998521 1111111111111010 0123346988 99999999975
No 266
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=92.00 E-value=0.044 Score=58.92 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=30.9
Q ss_pred CcccccchhHHHhhhhcCcceeeeecCCCCcee--------eecccCCccc-cccccccccccCc
Q 004627 212 TRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEI--------GTYVEKLMTS-ELSGNVIDICPVG 267 (741)
Q Consensus 212 ~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i--------~~~~~~~~~c-~~cg~cv~vCP~g 267 (741)
+.|=.|++|+++||.-+-+..-.+..|--.... ..+.....++ ..||-|+++||-+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN 249 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc
Confidence 889999999999998443333222221000000 0000111122 3799999999988
No 267
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.00 E-value=0.59 Score=38.51 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=44.6
Q ss_pred EEEEECCE----EEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEc
Q 004627 70 IEVFVDGY----PLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKT 142 (741)
Q Consensus 70 v~~~idg~----~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t 142 (741)
++|++||+ ++++++|.||.+.+...|+.- ..+.|++|+.. +. =.+.+++|.+|..
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l~~~~---------------~~v~v~vNg~i--v~-~~~~l~~gD~Vei 63 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAVGFNT---------------ESAIAKVNGKV--AL-EDDPVKDGDYVEV 63 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHcCCCC---------------ccEEEEECCEE--CC-CCcCcCCCCEEEE
Confidence 89999999 899999999999999998741 34789999953 32 2778899988864
No 268
>PRK13984 putative oxidoreductase; Provisional
Probab=91.95 E-value=0.076 Score=62.82 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.7
Q ss_pred ccccCCcccccchhHHHhhh
Q 004627 207 VKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~ 226 (741)
+.+|.++|+.|+.|+.+||.
T Consensus 81 ~~i~~~~c~~c~~c~~~Cp~ 100 (604)
T PRK13984 81 PVIDYGRCSFCALCVDICTT 100 (604)
T ss_pred cccCcccCcCcchHHhhCCc
Confidence 45688999999999999986
No 269
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.74 E-value=0.029 Score=63.06 Aligned_cols=54 Identities=11% Similarity=-0.137 Sum_probs=30.5
Q ss_pred CCcccccchhHHHhhhhcCcceee-eecCCCCceeeecc-cCCccccc--cccccccccCc
Q 004627 211 MTRCIQCTRCVRFATEVAGVQDLG-MLGRGSGEEIGTYV-EKLMTSEL--SGNVIDICPVG 267 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~g~~~l~-~~~r~~~~~i~~~~-~~~~~c~~--cg~cv~vCP~g 267 (741)
..-||.||+|+++||-..-...|. ....++ +.... -..++|.. ||.|.-|||..
T Consensus 372 ~~aCI~CG~C~~vCPm~L~P~~L~~a~~~~d---~d~a~~lg~~ecieedCG~CsyVCPSk 429 (447)
T TIGR01936 372 ERAMIPIGIYERVMPLDIPPTLLLKALIAGD---FDKAQRLGALEVDEEDFALCTFVDPSK 429 (447)
T ss_pred ccceeECChHhhcCCCCCCHHHHHHHHHcCC---HHHHHHCCCcccCccccccCceECCCC
Confidence 345999999999998522111111 111111 00000 12346765 99999999965
No 270
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=91.53 E-value=0.59 Score=37.81 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=43.7
Q ss_pred EEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcc-cccccCCCCCCCEEEc
Q 004627 71 EVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-VASCAMPALPGMKIKT 142 (741)
Q Consensus 71 ~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~-~~aC~~~v~~gm~v~t 142 (741)
+|+|||++++++++.||.+.+...++.. ..+.|.||+..-+ -.-..+++++|.+|..
T Consensus 1 ~i~iNg~~~~~~~~~tv~~ll~~l~~~~---------------~~i~V~vNg~~v~~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 1 KITVNGEPREVEEGATLAELLEELGLDP---------------RGVAVALNGEIVPRSEWASTPLQDGDRIEI 58 (65)
T ss_pred CEEECCeEEEcCCCCCHHHHHHHcCCCC---------------CcEEEEECCEEcCHHHcCceecCCCCEEEE
Confidence 3789999999999999999999998641 3468999995211 1235578999988864
No 271
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=91.52 E-value=0.069 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.3
Q ss_pred ccccccCCcccccchhHHHhhh
Q 004627 205 PLVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~ 226 (741)
..+.+||.+||.||-|+.+||.
T Consensus 143 trYdIDmtkCIyCG~CqEaCPv 164 (212)
T KOG3256|consen 143 TRYDIDMTKCIYCGFCQEACPV 164 (212)
T ss_pred eeecccceeeeeecchhhhCCc
Confidence 4556899999999999999986
No 272
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=91.38 E-value=0.85 Score=37.36 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=43.8
Q ss_pred cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCccc-ccccCCCCCCCEEE
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPV-ASCAMPALPGMKIK 141 (741)
Q Consensus 69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~-~aC~~~v~~gm~v~ 141 (741)
++++.+||++++++++.|+.+.+...|+.. +.+.|++||..-|. .-=.+.+++|.+|.
T Consensus 2 ~m~i~~ng~~~e~~~~~tv~dLL~~l~~~~---------------~~vav~vNg~iVpr~~~~~~~l~~gD~ie 60 (68)
T COG2104 2 PMTIQLNGKEVEIAEGTTVADLLAQLGLNP---------------EGVAVAVNGEIVPRSQWADTILKEGDRIE 60 (68)
T ss_pred cEEEEECCEEEEcCCCCcHHHHHHHhCCCC---------------ceEEEEECCEEccchhhhhccccCCCEEE
Confidence 478999999999999999999999999873 56789999952211 11455666666654
No 273
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=91.14 E-value=0.02 Score=56.04 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=37.4
Q ss_pred CCcccccchhHHHhhhhcCcceeeeecC--------CCCceeeecccCCccccccccccccccCccccccc
Q 004627 211 MTRCIQCTRCVRFATEVAGVQDLGMLGR--------GSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~i~g~~~l~~~~r--------~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
-..|++||.|.-.||. +.. .....| |..- -....+..+.|..|..|.+-||-|-.....
T Consensus 38 l~~C~QCG~CT~sCPs--~r~-t~y~pR~ii~~~~~g~~d-~il~~~~lW~C~tCytC~eRCPr~v~i~~v 104 (195)
T COG1150 38 LEGCYQCGTCTGSCPS--GRF-TDYSPRKIIRKARLGLVD-LILSSESLWACVTCYTCTERCPRGVKIVEV 104 (195)
T ss_pred HhHhhccCcccCCCCC--ccc-CCCCHHHHHHHHHcccHH-HHhcCCcceeeeechhhhhhCCCCCCHHHH
Confidence 5669999999999985 111 111111 2111 112234566799999999999998765444
No 274
>PLN02906 xanthine dehydrogenase
Probab=90.89 E-value=0.19 Score=64.35 Aligned_cols=92 Identities=23% Similarity=0.312 Sum_probs=65.2
Q ss_pred CChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC--------CcccccccCCC--CCCCEEEccchhHH--HHH
Q 004627 84 GFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS--------PKPVASCAMPA--LPGMKIKTDTPLAK--KAR 151 (741)
Q Consensus 84 g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~--------~~~~~aC~~~v--~~gm~v~t~~~~~~--~~r 151 (741)
.+|||+.++..|..=.++ -+..|.|+.|.|.|++. .+++.||.+++ -+|..|.|-..... ..-
T Consensus 1 ~~~ll~~LR~~~l~g~k~-----gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~ 75 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKL-----GCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGL 75 (1319)
T ss_pred CCcHHHHHHhCCCCCCCC-----CcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCC
Confidence 368999999866554444 23669999999999841 25789999999 68999999644331 111
Q ss_pred hHHHHHHHhhCCCCCCCcCCCCCChhhhH
Q 004627 152 EGVMEFLLMNHPLDCPICDQGGECDLQDQ 180 (741)
Q Consensus 152 ~~~le~~l~~hp~dC~~C~~~gec~lq~~ 180 (741)
.-+-+.+..+|-..|..|.-|.-..+..+
T Consensus 76 ~~vq~a~~~~~~~QCG~CtpG~vm~~~~l 104 (1319)
T PLN02906 76 HPVQEALASMHGSQCGFCTPGFIMSMYAL 104 (1319)
T ss_pred CHHHHHHHHcCCCcCCCCchHHHHHHHHH
Confidence 33556678899999999998764444443
No 275
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=90.22 E-value=0.12 Score=42.49 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=15.8
Q ss_pred ccCCcccccchhHHHhhh
Q 004627 209 TVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~ 226 (741)
.....|++||||+++||.
T Consensus 47 ~~~~~CVgCgrCv~~CP~ 64 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPA 64 (69)
T ss_pred cCCccCCCcChHhhhcCC
Confidence 357789999999999996
No 276
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=90.18 E-value=0.18 Score=40.03 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=12.7
Q ss_pred cccccccccccccCcccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKPF 274 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~ 274 (741)
.|..||.|+.+||.+|+.....
T Consensus 7 ~Ci~Cg~C~~~Cp~~~~~~i~~ 28 (59)
T PF14697_consen 7 KCIGCGKCVRACPDGAIDAIEV 28 (59)
T ss_dssp T----SCCCHHCCCCS-S-ECC
T ss_pred cccChhhHHhHcCccceeeEEe
Confidence 4999999999999877665543
No 277
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=89.98 E-value=0.13 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.653 Sum_probs=18.1
Q ss_pred cccccCCcccccchhHHHhhh
Q 004627 206 LVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.+.++..+|+.||+|+.+||+
T Consensus 67 ~~~~~~~~C~~Cg~C~~~CPt 87 (181)
T PRK08222 67 TWQLYLGRCIYCGRCEEVCPT 87 (181)
T ss_pred ceeeccCcCcCCCCcccccCc
Confidence 445678899999999999997
No 278
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=89.91 E-value=0.12 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=18.3
Q ss_pred cccccCCcccccchhHHHhhh
Q 004627 206 LVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.+.+|..+|++||+|+.+||+
T Consensus 67 ~~~i~~~~C~~Cg~C~~vCP~ 87 (180)
T PRK12387 67 AWEFNLGRCIFCGRCEEVCPT 87 (180)
T ss_pred cceeccccCcCccchhhhcCc
Confidence 345688999999999999997
No 279
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=89.84 E-value=0.065 Score=58.40 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=33.1
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccC
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPV 266 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~ 266 (741)
.....++|..|+.|.-+||-. .++. +|-.-... ........|..||.|...||.
T Consensus 28 ~~r~~~iC~~Cr~C~~~Cpvf---P~l~--~r~~~~~~-d~~~~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 28 VARQMQICNACRYCEGFCAVF---PAMT--RRLEFGKA-DIHYLANLCHNCGACLHACQY 81 (389)
T ss_pred HHHHhHhCCCCCCccccCCCc---hhhh--hhhcCChh-hhHHHHHhCcCcccccccCcC
Confidence 335678999999999999842 1221 22110000 000112259999999999998
No 280
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=89.41 E-value=0.7 Score=56.30 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=70.2
Q ss_pred EEEEECCEEEEe---CCCChHHHHHHHC-CCCc-cccccCCCCCCccccCccEEEEcCC-------CcccccccCCC--C
Q 004627 70 IEVFVDGYPLKI---PKGFTVLQACEVA-GVDI-PRFCYHSRLSIAGNCRMCLVEVEKS-------PKPVASCAMPA--L 135 (741)
Q Consensus 70 v~~~idg~~~~~---~~g~tvl~a~~~~-g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~-------~~~~~aC~~~v--~ 135 (741)
+.|.|||+.+++ ++..|++.-++.. |..- ...| .-|.|+.|.|.+-+- ...+=||-|++ -
T Consensus 3 l~F~VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC------~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s~ 76 (1257)
T KOG0430|consen 3 LVFAINGKRVEVELLPPDLTLNTFLREKLGLTGTKLGC------GEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNSV 76 (1257)
T ss_pred eEEEECCEEeeEecCCcchhHHHHHHHhcCCcceeecc------CCCCccceEEEEeccCCCceeEEeehhhhhhhcccc
Confidence 679999999876 6899999998763 4432 2235 679999999999651 12356999999 5
Q ss_pred CCCEEEccchhHHHHH---hHHHHHHHhhCCCCCCCcCCCC
Q 004627 136 PGMKIKTDTPLAKKAR---EGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 136 ~gm~v~t~~~~~~~~r---~~~le~~l~~hp~dC~~C~~~g 173 (741)
.|+.|.|-.. +-..| -.+-|.|-.-|-..|..|-.|.
T Consensus 77 ~g~~VtT~EG-lGn~~~g~HPiq~RlA~~hgsQCGFCtPG~ 116 (1257)
T KOG0430|consen 77 HGLEVTTSEG-LGNRRDGYHPIQERLAKMHGSQCGFCTPGF 116 (1257)
T ss_pred cceEEEeeec-ccccccCcCcHHHHHhhccCCcccCCCccH
Confidence 7899988432 21112 3345677888999999998874
No 281
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=89.29 E-value=0.18 Score=44.02 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=17.8
Q ss_pred cccccccccccccCccccc
Q 004627 253 TSELSGNVIDICPVGALTS 271 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~ 271 (741)
.|..||.|+++||++||..
T Consensus 30 ~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 30 KCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred ccCCCCCchhhCCHHHhhc
Confidence 4999999999999999987
No 282
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=88.65 E-value=0.2 Score=55.66 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=29.3
Q ss_pred chhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 218 TRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 218 ~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
..|+..||. .++.+.+ . ..+....+ .|..||+|+.+||. |+...
T Consensus 248 ~~~v~~Cp~----~ai~~~~--~-~~~~id~~---~C~~Cm~Ci~~~p~-a~~~g 291 (402)
T TIGR02064 248 NEVVNRCPT----KAISWDG--S-KELSIDNR---ECVRCMHCINKMPK-ALHPG 291 (402)
T ss_pred hhHhhcCCc----cccccCC--C-ceEEEcch---hcCcCccccccCcc-cccCC
Confidence 348999986 5665533 1 12333323 49999999999998 77654
No 283
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=88.59 E-value=0.25 Score=61.55 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=34.0
Q ss_pred cccccCCcccccchhHHH--hhhhcCcceeeeecCCCCceeeecccCCccccccccccc-cccC
Q 004627 206 LVKTVMTRCIQCTRCVRF--ATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVID-ICPV 266 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~--C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~-vCP~ 266 (741)
.+.+|.+.|.+||.|... ||.|.....- . |....|.. ..|..|+.|++ +||.
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~ai~~~~t~--~--grK~~Id~-----s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCLSVEPVETP--F--GRKRRIDQ-----SSCNKDFSCVNGFCPS 677 (1159)
T ss_pred eEEEcccccCCchhhhhccCCcceeecccc--C--CccEEECH-----HHCCCccccccCCCCC
Confidence 556799999999999874 7654322110 1 21223332 23999999999 9995
No 284
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=88.57 E-value=0.33 Score=43.30 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=18.3
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+++||++++....
T Consensus 17 ~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 17 RCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred cccCCcchhhhcChhhhcccc
Confidence 499999999999999987544
No 285
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=88.50 E-value=0.27 Score=45.12 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=17.8
Q ss_pred cccccccccccccCcccccc
Q 004627 253 TSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~ 272 (741)
.|..||.|+.+||.+|+...
T Consensus 43 ~Ci~C~~C~~~CP~~ai~~~ 62 (120)
T PRK08348 43 KCVGCRMCVTVCPAGVFVYL 62 (120)
T ss_pred cCcCcccHHHHCCccceEcc
Confidence 49999999999999998654
No 286
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=88.14 E-value=0.21 Score=52.81 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=30.7
Q ss_pred ccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccc
Q 004627 216 QCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTS 271 (741)
Q Consensus 216 ~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~ 271 (741)
..+-|...||--+-... .++.....+. ..+...|..|+.|+++||++++..
T Consensus 177 ~r~wC~~lCP~Ga~~~~---~~~~~~~~i~--~~d~~~C~~C~~C~~~CP~~~i~~ 227 (271)
T PRK09477 177 EHGWCGHLCPLGAFYGL---IGKKSLIRVK--AHDRQKCTRCMDCFHVCPEPQVLR 227 (271)
T ss_pred CCchhhccCCHHHHHHh---cccccccccc--cCCcccCcccCCcCCcCCCcceec
Confidence 45779999986332222 2222222222 012235999999999999998654
No 287
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=87.86 E-value=0.25 Score=41.81 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.4
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+++||+++|...+
T Consensus 9 ~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 9 TCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred cCcCcchHHHHCCccceeeec
Confidence 499999999999999987654
No 288
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=87.51 E-value=0.76 Score=37.03 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=41.8
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcc-cccccCCCCCCCEEEc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-VASCAMPALPGMKIKT 142 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~-~~aC~~~v~~gm~v~t 142 (741)
++|+|||+++++++|.||.+++...++. |. ..|++|+.--+ -.-=.+.+++|.+|.-
T Consensus 1 m~i~vNg~~~~~~~~~tl~~ll~~l~~~-~~---------------~~v~vN~~~v~~~~~~~~~L~~gD~vei 58 (65)
T PRK06944 1 MDIQLNQQTLSLPDGATVADALAAYGAR-PP---------------FAVAVNGDFVARTQHAARALAAGDRLDL 58 (65)
T ss_pred CEEEECCEEEECCCCCcHHHHHHhhCCC-CC---------------eEEEECCEEcCchhcccccCCCCCEEEE
Confidence 3689999999999999999999999874 21 36899984211 0112566888888764
No 289
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=87.34 E-value=1.8 Score=35.26 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=41.0
Q ss_pred EEEEECCEEEEeCCC-ChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCccccc-ccCCCCCCCEEE
Q 004627 70 IEVFVDGYPLKIPKG-FTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVAS-CAMPALPGMKIK 141 (741)
Q Consensus 70 v~~~idg~~~~~~~g-~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~a-C~~~v~~gm~v~ 141 (741)
++|+|||++++++++ .||.+.+...|+.. ..+.|++|+.-=+.-. =.+.+++|.+|.
T Consensus 1 m~I~vNG~~~~~~~~~~tv~~lL~~l~~~~---------------~~vav~vN~~iv~r~~w~~~~L~~gD~iE 59 (67)
T PRK07696 1 MNLKINGNQIEVPESVKTVAELLTHLELDN---------------KIVVVERNKDILQKDDHTDTSVFDGDQIE 59 (67)
T ss_pred CEEEECCEEEEcCCCcccHHHHHHHcCCCC---------------CeEEEEECCEEeCHHHcCceecCCCCEEE
Confidence 368999999999999 68999999999752 1348999985111111 235578887775
No 290
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=87.19 E-value=0.34 Score=47.74 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCChHHHHHHHCCCCc-cccccCCCCCCccccCccEEEEcCCCcccccccCCCCCC
Q 004627 83 KGFTVLQACEVAGVDI-PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPG 137 (741)
Q Consensus 83 ~g~tvl~a~~~~g~~i-p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~g 137 (741)
=|-.||+|+.++.-++ |++-| .+.+..|+|+.|.+-|+|. ..+||.+.+..+
T Consensus 75 CGpMvLDALiKIKnE~DptLTF-RRSCREGICGSCAMNI~G~--NtLACi~kId~n 127 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTF-RRSCREGICGSCAMNINGT--NTLACICKIDQN 127 (288)
T ss_pred cchHHHHHHHHhhcccCCceeh-hhhhhccccccceeccCCC--ceeEEEEeeccC
Confidence 5889999999987776 54443 3334779999999999994 467999998764
No 291
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=86.85 E-value=0.28 Score=40.37 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=14.6
Q ss_pred ccccccccccccccCc
Q 004627 252 MTSELSGNVIDICPVG 267 (741)
Q Consensus 252 ~~c~~cg~cv~vCP~g 267 (741)
..|+.||.|+++||++
T Consensus 50 ~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 50 GDCVGCGRCVRVCPAG 65 (69)
T ss_pred ccCCCcChHhhhcCCC
Confidence 4599999999999997
No 292
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=86.84 E-value=0.26 Score=43.07 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=19.0
Q ss_pred cccccCCcccccchhHHHhhh
Q 004627 206 LVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.+.+|.++||+||.|+.+|++
T Consensus 55 ~V~vd~e~CigCg~C~~~C~~ 75 (95)
T PRK15449 55 SVRFDYAGCLECGTCRILGLG 75 (95)
T ss_pred CEEEcCCCCCcchhhhhhcCC
Confidence 566899999999999999976
No 293
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=86.57 E-value=0.18 Score=55.18 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=25.3
Q ss_pred cccccccccccccCcccccccccccccccceeeeeecCCCC
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTD 293 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C 293 (741)
.|..||-|+.-||.+||..-.. ...|+-+.++-.|.+|
T Consensus 51 lCigcgicvkkcpf~ai~iinl---p~nl~~etthry~~n~ 88 (592)
T KOG0063|consen 51 LCIGCGICVKKCPFEAIQIINL---PTNLEKETTHRYSANS 88 (592)
T ss_pred hhccccceeeccCcceEEecCC---chhHhhhhhhhhcccc
Confidence 3888888888888888887664 3566655444444333
No 294
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=86.45 E-value=0.46 Score=41.26 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=38.2
Q ss_pred ccccc-cCCcccccc--hhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccC-ccc
Q 004627 205 PLVKT-VMTRCIQCT--RCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPV-GAL 269 (741)
Q Consensus 205 p~i~~-d~~rCI~C~--rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~-gAl 269 (741)
|.|.. |.+.|..|. +|+.+||. +...+ .+.| .+....+. |..||.|-=+||. +.+
T Consensus 25 pHI~v~~~~~~~~~~~~~l~~aCPA--~~Y~~--~~~g---~l~~~yeg---ClECGTCRvlc~~~~~i 83 (99)
T COG2440 25 PHIIVKDPDDCQECEDKPLIKACPA--GCYKL--IDDG---KLRFDYEG---CLECGTCRVLCPHSGLI 83 (99)
T ss_pred CcEecCCchhhhhccchhhhhcCCH--HHeeE--CCCC---cEEEeecC---eeeccceeEecCCCcce
Confidence 55544 589999999 99999986 33333 2222 23333333 9999999999999 544
No 295
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=86.45 E-value=0.54 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.8
Q ss_pred ccccccccccccccCccccccc
Q 004627 252 MTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 252 ~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
..|..||.|+++||++|+....
T Consensus 114 ~~Ci~Cg~Cv~aCp~~ai~~~~ 135 (191)
T PRK05113 114 DNCIGCTKCIQACPVDAIVGAT 135 (191)
T ss_pred CcCCCCChhhhhCCHhhheccc
Confidence 3599999999999999987643
No 296
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=85.89 E-value=0.2 Score=56.28 Aligned_cols=39 Identities=10% Similarity=-0.055 Sum_probs=24.7
Q ss_pred ccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCc
Q 004627 252 MTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNI 299 (741)
Q Consensus 252 ~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i 299 (741)
..|..|+.|+++||++. ....- .......|..|...|.-
T Consensus 231 ~~Ci~C~~Cv~vCP~gi-~~~~~--------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 231 GDCIDCNLCVQVCPTGI-DIRDG--------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCChhhhHHhCCCCC-EeCCC--------CchhChhhhHHHHhCCC
Confidence 46999999999999993 22211 11123345666677764
No 297
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=85.87 E-value=0.47 Score=59.17 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=33.8
Q ss_pred cccccCCcccccchhHHH--hhhhcCcceeeeecCCCCceeeecccCCccccccccccc-cccC
Q 004627 206 LVKTVMTRCIQCTRCVRF--ATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVID-ICPV 266 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~--C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~-vCP~ 266 (741)
.+.+|.+.|.+||-|... ||.|.....- . |....|.. ..|..|+.|++ +||.
T Consensus 637 r~~In~~vCegCgdC~~~s~C~ai~p~~t~--~--grK~~Idq-----s~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 637 RVFINEAVCEGCGDCSVKSNCLSVEPVETE--F--GRKRRIDQ-----SSCNKDFSCLKGFCPS 691 (1165)
T ss_pred eEEEcccccCCchhhhhccCCcceeecccc--C--CccEEECH-----hHCCCccccccCCCCC
Confidence 556799999999999873 7754332210 1 21223322 23999999999 9985
No 298
>PLN00071 photosystem I subunit VII; Provisional
Probab=85.72 E-value=0.3 Score=41.37 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.5
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+++||+++|....
T Consensus 10 ~C~~C~~C~~~CP~~~i~~~~ 30 (81)
T PLN00071 10 TCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCcChhHHHHHCCccceeeec
Confidence 499999999999999987654
No 299
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.71 E-value=2.7 Score=33.88 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=40.8
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcc-cccccCCCCCCCEEEc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-VASCAMPALPGMKIKT 142 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~-~~aC~~~v~~gm~v~t 142 (741)
++|+|||+++++ ++.||.+.+...++.- ....|++|+.--+ -.=-.+++++|.+|..
T Consensus 1 m~i~~Ng~~~~~-~~~tl~~Ll~~l~~~~---------------~~vavavN~~iv~~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 1 MKLFVNGETLQT-EATTLALLLAELDYEG---------------NWLATAVNGELVHKEARAQFVLHEGDRIEI 58 (65)
T ss_pred CEEEECCeEEEc-CcCcHHHHHHHcCCCC---------------CeEEEEECCEEcCHHHcCccccCCCCEEEE
Confidence 368999999999 5679999998887541 2246999984111 1124688999998864
No 300
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=85.59 E-value=0.5 Score=58.82 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=33.6
Q ss_pred cccccCCcccccchhHHH--hhhhcCcceeeeecCCCCceeeecccCCccccccccccc-cccC
Q 004627 206 LVKTVMTRCIQCTRCVRF--ATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVID-ICPV 266 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~--C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~-vCP~ 266 (741)
.+.+|.+.|.+||-|... ||.+.....- . |....|.. ..|..|+.|++ +||.
T Consensus 651 r~~In~~vCeGCgdC~~~snC~ai~p~et~--~--grK~~Idq-----s~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 651 RVFINELVCEGCGDCSVQSNCLAVQPVETE--F--GRKRKINQ-----SSCNKDFSCVKGFCPS 705 (1186)
T ss_pred cEEEcccccCCchhhhhccCCceeeecccc--C--CccEEECH-----hHCCCccccccCCCCC
Confidence 555799999999999874 7654332210 1 11223322 23999999999 9996
No 301
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=85.50 E-value=0.54 Score=48.80 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=27.1
Q ss_pred cccccccccccccCcccccccccccccccce-eeeeecCCCCCCCCCce
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKARNWEL-KGTETIDVTDAVGSNIR 300 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel-~~~~siC~~C~~gC~i~ 300 (741)
.|..||.|.++|+.+||..-+ .+.|.+ .....=|..|+.-|+..
T Consensus 70 ~C~~CG~C~~vC~f~Ai~~~~----~~~~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 70 KCIRCGKCAEVCRFGAIVVLP----GGKPVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred hccccCcHHHhCCCCeEEEcC----CCceecCcccccCcccceeeCCCc
Confidence 399999999999999995321 122322 22233344455667554
No 302
>PRK06273 ferredoxin; Provisional
Probab=85.41 E-value=0.34 Score=47.08 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=18.1
Q ss_pred cccccccccccccCcccccc
Q 004627 253 TSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~ 272 (741)
.|..||.|+.+||++||...
T Consensus 50 ~CigCg~C~~aCP~~AI~~~ 69 (165)
T PRK06273 50 LCIGCGGCANVCPTKAIEMI 69 (165)
T ss_pred hCcChhHHHHhcCccceeee
Confidence 49999999999999999755
No 303
>PRK06437 hypothetical protein; Provisional
Probab=85.39 E-value=3.1 Score=33.92 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=41.3
Q ss_pred EEECC---EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEc
Q 004627 72 VFVDG---YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKT 142 (741)
Q Consensus 72 ~~idg---~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t 142 (741)
|++|| ++++++++.||.|.+...|+. | ..+.|++||..- . =.+.+++|.+|..
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~-~--------------~~vaV~vNg~iv--~-~~~~L~dgD~Vei 60 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKDLGLD-E--------------EEYVVIVNGSPV--L-EDHNVKKEDDVLI 60 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHHcCCC-C--------------ccEEEEECCEEC--C-CceEcCCCCEEEE
Confidence 78899 889999999999999999975 2 234788999532 2 5567788888764
No 304
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=85.27 E-value=0.37 Score=41.68 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=17.4
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
.+|.++|++||+|+.+||.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~ 84 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPK 84 (91)
T ss_pred ecCCccCcChhhhhhhCCH
Confidence 4688999999999999997
No 305
>PRK06991 ferredoxin; Provisional
Probab=84.66 E-value=0.47 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.4
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|+.||.|+++||+++|...+
T Consensus 86 ~CigCg~Cv~aCP~~AI~~~~ 106 (270)
T PRK06991 86 LCIGCTLCMQACPVDAIVGAP 106 (270)
T ss_pred cCCCCcHHHHhCCHhheeccc
Confidence 499999999999999997543
No 306
>PRK02651 photosystem I subunit VII; Provisional
Probab=84.55 E-value=0.48 Score=40.07 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.1
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+++||++++...+
T Consensus 10 ~Ci~C~~C~~~CP~~~i~~~~ 30 (81)
T PRK02651 10 TCIGCTQCVRACPLDVLEMVP 30 (81)
T ss_pred cCCCcchHHHHCCccceeccc
Confidence 499999999999999986543
No 307
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=84.55 E-value=0.41 Score=43.96 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.3
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+++||++++....
T Consensus 44 ~Ci~C~~C~~~CP~~ai~~~~ 64 (122)
T TIGR01971 44 KCIGCTLCAAVCPADAIRVVP 64 (122)
T ss_pred cCcCcchhhhhcCHhHeeeee
Confidence 499999999999999987553
No 308
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=84.53 E-value=0.41 Score=51.59 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.6
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
-|..|+.|++.||++||....
T Consensus 206 fC~~C~~C~~~CP~~Ai~~~~ 226 (314)
T TIGR02486 206 FCETCGKCADECPSGAISKGG 226 (314)
T ss_pred cCcchhHHHhhCCccccCCCC
Confidence 399999999999999998664
No 309
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=84.52 E-value=0.15 Score=59.23 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=33.3
Q ss_pred hCCCCCCCcCC-CCCCh-hhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhhc
Q 004627 161 NHPLDCPICDQ-GGECD-LQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVA 228 (741)
Q Consensus 161 ~hp~dC~~C~~-~gec~-lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i~ 228 (741)
-.|..|..|+. .--|+ +|- +....++-.++. .|.+ +.. -..++...|+.||.||.+||-.+
T Consensus 146 ydp~qCIlCgRCVeaCqevqv-~eaL~i~w~~~~--pRV~--wd~--~~~i~~SSCVsCG~CvtVCP~nA 208 (978)
T COG3383 146 YDPNQCILCGRCVEACQEVQV-NEALTIDWRGED--PRVI--WDN--DVPINESSCVSCGACVTVCPVNA 208 (978)
T ss_pred ecchheeehhHHHHHHHhhhc-eeEEEeecccCC--ccee--cCC--CCccccccccccCccceecchhh
Confidence 34678999986 33353 332 122223222221 2222 111 12245678999999999998643
No 310
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=84.46 E-value=0.58 Score=45.46 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.2
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+.+||++|+....
T Consensus 59 ~Ci~C~~C~~~CP~~ai~~~~ 79 (164)
T PRK05888 59 RCIACKLCAAICPADAITIEA 79 (164)
T ss_pred cCCcccChHHHcCcccccccc
Confidence 599999999999999987443
No 311
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=84.07 E-value=0.36 Score=53.66 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=36.6
Q ss_pred cccccCCccc-ccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccccc
Q 004627 206 LVKTVMTRCI-QCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 206 ~i~~d~~rCI-~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~ 272 (741)
.+.+|..+|. .|.+|-+.||+-.+.. +.+...+ +....+ .+|..|+.|+|+||...+...
T Consensus 205 ~v~~~~~~~~~r~~~c~k~cp~~~~~~-v~v~p~~----~~~~~~--~~CI~C~~CidaCd~~~~~~~ 265 (386)
T COG0348 205 KVNYDDKRGCPRCKRCKKVCPEPIPLW-VQVCPAG----IDIRDG--LECIGCGRCIDACDDDMLKFN 265 (386)
T ss_pred EEecccccCCcccccccccCCccccce-eEecccc----cccccc--cccccHhhHhhhCCHHhheec
Confidence 3345666666 6999999999744411 1111111 111111 159999999999999887644
No 312
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=83.39 E-value=2.7 Score=45.29 Aligned_cols=97 Identities=21% Similarity=0.338 Sum_probs=67.0
Q ss_pred CcEEEEECCEEEEe---CCCChHHHHHHH-CCCCccccccCCCCCCccccCccEEEEc----CC---CcccccccCCC--
Q 004627 68 DAIEVFVDGYPLKI---PKGFTVLQACEV-AGVDIPRFCYHSRLSIAGNCRMCLVEVE----KS---PKPVASCAMPA-- 134 (741)
Q Consensus 68 ~~v~~~idg~~~~~---~~g~tvl~a~~~-~g~~ip~~C~~~~l~~~G~C~~C~V~v~----~~---~~~~~aC~~~v-- 134 (741)
.+|.|++||..+.+ ++..|||+-++. .+..- .+.-+..|-|+.|.|.|. |. -+.|=||..-+
T Consensus 7 ~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltG-----tKEGCAEGDCGACTVlVgrl~~g~~l~yeSVNACirfl~s 81 (493)
T COG4630 7 NTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTG-----TKEGCAEGDCGACTVLVGRLVDGGSLRYESVNACIRFLGS 81 (493)
T ss_pred ceeEEEecCceEEeecCCcchHHHHHHHHhccccc-----ccccccCCCcCceEEEEEeecCCCceeeeehhHHHHHHhh
Confidence 45999999988764 689999999984 34331 122236699999999993 22 23467998877
Q ss_pred CCCCEEEccchh------HHHHHhHHHHHHHhhCCCCCCCcCCCC
Q 004627 135 LPGMKIKTDTPL------AKKAREGVMEFLLMNHPLDCPICDQGG 173 (741)
Q Consensus 135 ~~gm~v~t~~~~------~~~~r~~~le~~l~~hp~dC~~C~~~g 173 (741)
-+|..|.|-... +...++. |.--|--.|..|--|.
T Consensus 82 L~G~hvvTvE~L~~~~g~LHpVQqa----mvd~hGSQCGfCTPGF 122 (493)
T COG4630 82 LDGTHVVTVEHLRGQDGTLHPVQQA----MVDFHGSQCGFCTPGF 122 (493)
T ss_pred cCCceEEEehhhcCCCCCcCHHHHH----HHhccCCccCCcCchH
Confidence 689999884332 2233333 3444889999998875
No 313
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=83.10 E-value=0.49 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.584 Sum_probs=19.7
Q ss_pred ccccccCCcccccchhHHHhhh
Q 004627 205 PLVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~ 226 (741)
..+.+|.++||+||+|+++||.
T Consensus 207 ~~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 207 KSLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred CceeeccccCCcCCchHHhCch
Confidence 4567899999999999999985
No 314
>CHL00065 psaC photosystem I subunit VII
Probab=82.90 E-value=0.46 Score=40.26 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.5
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+++||++++...+
T Consensus 10 ~Ci~Cg~C~~~CP~~~i~~~~ 30 (81)
T CHL00065 10 TCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCCChhHHHHHCCccchhhee
Confidence 499999999999999987654
No 315
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=82.88 E-value=0.42 Score=50.73 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=17.3
Q ss_pred cccccccccccccCccccc
Q 004627 253 TSELSGNVIDICPVGALTS 271 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~ 271 (741)
.|..|+.|+++||++||..
T Consensus 160 ~C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 160 YCGRCTKCIDACPTQALVE 178 (282)
T ss_pred CCccHHHHHHhcCcccccC
Confidence 4999999999999999974
No 316
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=82.81 E-value=0.62 Score=50.17 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=29.4
Q ss_pred ccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCcccccccccccccc
Q 004627 209 TVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICP 265 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP 265 (741)
.|...|.+||.|+-.||. .+....... . ......+.+||.|.++||
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-----~i~~~~~~~--~----~~~~c~~~~~~~~~~~cp 47 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-----AITERDEAP--L----LIEECMDNGHGTCLKVCP 47 (332)
T ss_pred CcCcccccchhhHhhCCc-----eEEEecccc--h----hhhhhhcccchHHhhhCc
Confidence 467889999999999984 233222211 1 112223567789999999
No 317
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=82.66 E-value=0.75 Score=38.49 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.3
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..|+.|+++||++|+....
T Consensus 26 ~C~~C~~C~~~Cp~~ai~~~~ 46 (78)
T TIGR02179 26 KCIKCKNCWLYCPEGAIQEDE 46 (78)
T ss_pred cCcChhHHHhhcCccceEecC
Confidence 499999999999999987643
No 318
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=82.15 E-value=0.6 Score=57.64 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=43.0
Q ss_pred ccccc----ccccccccCccccccc-ccccccccceeeeeec---CCCCCCCCCceEeeeCCE--EEEEcCCCCCCCCcc
Q 004627 253 TSELS----GNVIDICPVGALTSKP-FAFKARNWELKGTETI---DVTDAVGSNIRIDSRGPE--VMRILPRLNEDINEE 322 (741)
Q Consensus 253 ~c~~c----g~cv~vCP~gAl~~~~-~~~~~r~wel~~~~si---C~~C~~gC~i~v~vrdg~--V~rI~p~~~~~~n~g 322 (741)
.|..| |.|+++||++|+.... ..|.. .-+.-.++.. |.+|..-|.....-...+ +..-+-+-.+..|.|
T Consensus 887 rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~-~~~~~~~~~~C~~CG~C~~~CP~~~~py~dk~t~f~~~~d~~~s~n~g 965 (1019)
T PRK09853 887 RCLECNYVCEKCVDVCPNRANVSIAVPGFQN-RFQIVHLDAMCNECGNCAQFCPWNGKPYKDKITLFSLEEDFENSTNPG 965 (1019)
T ss_pred ccCCcccccchhhhhCCcccccccccCCccc-CCceEEcCccCccccchhhhCCCCCCcccccceEEcchhhhhcCcCCC
Confidence 57777 9999999999944333 11110 0112222334 455667787654433333 334445556678888
Q ss_pred cccccccc
Q 004627 323 WISDKTRF 330 (741)
Q Consensus 323 ~iC~KGr~ 330 (741)
|+-..++.
T Consensus 966 f~~~~~~~ 973 (1019)
T PRK09853 966 FLVEDGRV 973 (1019)
T ss_pred eEEeCCcE
Confidence 87654443
No 319
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=81.40 E-value=0.85 Score=42.71 Aligned_cols=19 Identities=21% Similarity=0.537 Sum_probs=16.9
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
.++.++|++||.|+.+||.
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~ 103 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPT 103 (133)
T ss_pred EeCcCcCcChhHHHHHCCc
Confidence 4577899999999999997
No 320
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=80.97 E-value=1.4 Score=42.78 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.5
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..||.|+++||++|+....
T Consensus 114 ~Ci~Cg~C~~aCp~~ai~~~~ 134 (165)
T TIGR01944 114 NCIGCTKCIQACPVDAIVGAA 134 (165)
T ss_pred cCCChhHHHHhCCccceEecC
Confidence 599999999999999987653
No 321
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=80.67 E-value=0.76 Score=49.07 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=16.9
Q ss_pred cccccccccccccCcccc
Q 004627 253 TSELSGNVIDICPVGALT 270 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~ 270 (741)
.|..||.|+++||++|+.
T Consensus 49 ~C~~C~~C~~~Cp~~a~~ 66 (295)
T TIGR02494 49 RCLGCGKCVEVCPAGTAR 66 (295)
T ss_pred cCCCCchhhhhCcccccc
Confidence 499999999999999987
No 322
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=80.67 E-value=0.77 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=19.4
Q ss_pred cccCCcccccchhHHHhhhhcCcceeee
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGM 235 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~ 235 (741)
..|..+|+.||.|+.+||. +++.+
T Consensus 98 ~id~~~Ci~Cg~Cv~aCP~----~AI~~ 121 (183)
T TIGR00403 98 SIDFGVCIFCGNCVEYCPT----NCLSM 121 (183)
T ss_pred ecCcccccCcCchhhhcCC----CCeec
Confidence 4578899999999999986 45544
No 323
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=80.63 E-value=0.83 Score=40.91 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=16.8
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
.+|.++|++|+.|+.+||.
T Consensus 77 ~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09624 77 VFDYDYCKGCGICANECPT 95 (105)
T ss_pred EECchhCCCcCchhhhcCc
Confidence 3577899999999999986
No 324
>COG1146 Ferredoxin [Energy production and conversion]
Probab=80.28 E-value=0.76 Score=37.52 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.9
Q ss_pred ccccccCCcccccchhHHHhhh
Q 004627 205 PLVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~ 226 (741)
..+..+.+.|+.|+.|+..||.
T Consensus 34 ~~~~~~~e~C~~C~~C~~~CP~ 55 (68)
T COG1146 34 KPVVARPEECIDCGLCELACPV 55 (68)
T ss_pred ceeEeccccCccchhhhhhCCc
Confidence 3455689999999999999997
No 325
>PRK08322 acetolactate synthase; Reviewed
Probab=79.27 E-value=4.7 Score=47.09 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCCC--cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNTS--ISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~~--~~di 430 (741)
+++++.+++.|.+. ++..+++|.... ......+.+|++.+|.+.+.+...- + .+...+|..+..+.. ..-+
T Consensus 183 ~~~i~~~~~~l~~A--~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l 260 (547)
T PRK08322 183 PKAIERAAEAIQAA--KNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAI 260 (547)
T ss_pred HHHHHHHHHHHHhC--CCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHHHH
Confidence 46788888989876 567777775432 2334567899999998877543321 1 111122221111211 2346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+++|+||.+|++.....+..+ . ...+.+++.||....
T Consensus 261 ~~aDlil~lG~~l~~~~~~~~---~---~~~~~~~i~id~d~~ 297 (547)
T PRK08322 261 EHADLIINVGHDVIEKPPFFM---N---PNGDKKVIHINFLPA 297 (547)
T ss_pred HhCCEEEEECCCCcccccccc---C---CCCCCeEEEEeCCHH
Confidence 899999999988654322111 1 124578999987543
No 326
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=79.26 E-value=0.69 Score=28.90 Aligned_cols=14 Identities=29% Similarity=0.365 Sum_probs=12.8
Q ss_pred cccccccccccccC
Q 004627 253 TSELSGNVIDICPV 266 (741)
Q Consensus 253 ~c~~cg~cv~vCP~ 266 (741)
.|+.|+.|+..||+
T Consensus 9 rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 9 RCIGCGACEVACPV 22 (22)
T ss_pred cccCchhHHHhhCc
Confidence 49999999999985
No 327
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=79.24 E-value=5.2 Score=47.49 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCCC--cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTS--ISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~~--~~di 430 (741)
+++++.+++.|++. ++..+++|.... .+....+.+|++++|.+.+.+...-. .+...+|..+..+.. ..-+
T Consensus 211 ~~~v~~~~~~L~~A--krPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l 288 (616)
T PRK07418 211 PRQINAALKLIEEA--ERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAV 288 (616)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHH
Confidence 57888888999876 456677775432 23345678999999998775433211 111112221111211 2346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
.+||+||++|++........... . ..+.++|.||...
T Consensus 289 ~~aDlvL~vG~~~~~~~~~~~~~----~-~~~~~~i~id~d~ 325 (616)
T PRK07418 289 TECDLLIAVGARFDDRVTGKLDE----F-ASRAKVIHIDIDP 325 (616)
T ss_pred HhCCEEEEEcCCCCccccCChhh----c-CCCCeEEEEeCCH
Confidence 89999999999753322111111 1 2467899998643
No 328
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=78.96 E-value=0.42 Score=38.66 Aligned_cols=55 Identities=31% Similarity=0.393 Sum_probs=33.3
Q ss_pred cccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCccccc
Q 004627 206 LVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTS 271 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~ 271 (741)
.|.+|.++|+|=|.|++.-|++ +....++ -|..... .-..=-.-++.||.|||+-
T Consensus 7 ~V~~d~~~C~hag~Cv~~~p~V-----Fd~~~~~---~v~~d~a---~~~~v~~~v~~CPSGAL~~ 61 (64)
T PF06902_consen 7 TVTWDRERCIHAGFCVRGAPEV-----FDQDDEP---WVSPDEA---SAEEVREAVDRCPSGALSY 61 (64)
T ss_pred EEEECcCcccchhhhhcCCCCc-----ccCCCCC---cCCcCcc---CHHHHHHHHHcCCccCcEE
Confidence 4567899999999999988753 3222221 1111100 0122236788999999963
No 329
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=78.63 E-value=3.9 Score=30.15 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=26.8
Q ss_pred cEEEEECCEEEEe-CCCChHHHHHHHCCCCc
Q 004627 69 AIEVFVDGYPLKI-PKGFTVLQACEVAGVDI 98 (741)
Q Consensus 69 ~v~~~idg~~~~~-~~g~tvl~a~~~~g~~i 98 (741)
+|+|.+||++.++ -...||-+++...||.+
T Consensus 1 ~Vtv~~dG~~~~v~T~a~tV~~~L~~~gI~l 31 (43)
T PF03990_consen 1 PVTVTVDGKEKTVYTTASTVGDALKELGITL 31 (43)
T ss_pred CEEEEECCEEEEEEeCCCCHHHHHHhCCCCC
Confidence 3899999999988 47889999999999985
No 330
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=78.22 E-value=1 Score=43.87 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=16.9
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
..|.++|+.|++|+.+||.
T Consensus 95 ~id~~~C~~Cg~C~~~CP~ 113 (167)
T CHL00014 95 SIDFGVCIFCGNCVEYCPT 113 (167)
T ss_pred cCCCCcCcCccchHhhcCc
Confidence 4578899999999999986
No 331
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=78.16 E-value=1 Score=42.16 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=20.0
Q ss_pred cccCCcccccchhHHHhhhhcCcceeeee
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGML 236 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~~ 236 (741)
.+|.++|++|++|+.+||. +++.+.
T Consensus 41 ~id~~~C~~Cg~Cv~~CP~----~AI~~~ 65 (132)
T TIGR02060 41 NIEPDMCWECYSCVKACPQ----GAIDVR 65 (132)
T ss_pred ecCchhCccHHHHHHhCCc----CceEEE
Confidence 3578999999999999986 455553
No 332
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.05 E-value=6 Score=46.51 Aligned_cols=110 Identities=16% Similarity=0.095 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Cccc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISG 429 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~d 429 (741)
.+++++.+++.|.+. ++..++.|... .....-.+.+|++++|.+.+.+...-. .+...+|..+..+. ...-
T Consensus 192 ~~~~i~~a~~~L~~A--~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~~~~~~~~ 269 (574)
T PRK07979 192 HKGQIKRALQTLVAA--KKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHGTYEANMT 269 (574)
T ss_pred CHHHHHHHHHHHHcC--CCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCCCHHHHHH
Confidence 478899999999886 56777777543 223334578999999998775533211 11111221111111 1235
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+++||+||++|+...+........ . ....++|.||....
T Consensus 270 l~~aDlvl~vG~~~~~~~~~~~~~----~-~~~~~~i~id~d~~ 308 (574)
T PRK07979 270 MHNADVIFAVGVRFDDRTTNNLAK----Y-CPNATVLHIDIDPT 308 (574)
T ss_pred HHhCCEEEEeCCCCcccccCChhh----c-CCCCeEEEEECCHH
Confidence 689999999998753332211111 1 13468999987544
No 333
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=77.96 E-value=14 Score=41.88 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhh--hhhhcCc-ccCC-Cc-ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSN--ADLRSGY-IMNT-SI-SGLEK 432 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~--~~~~~~~-~~~~-~~-~di~~ 432 (741)
++.++.+++.|++. ++..++.|..........+.+|++++|.+.+.+...-.... ..+|... ..+. .. .-+ +
T Consensus 198 ~~~i~~~~~~l~~A--krPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-~ 274 (432)
T TIGR00173 198 PESLDELWDRLNQA--KRGVIVAGPLPPAEDAEALAALAEALGWPLLADPLSGLRGGPHLVIDHYDLLLANPELREEL-Q 274 (432)
T ss_pred hhhHHHHHHHHhhc--CCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCcCHHHHHhcCCchhhhC-C
Confidence 45677778888875 46667777654333445678899999987664433211111 0111000 1111 11 224 8
Q ss_pred CCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 433 ADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 433 ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+|+||.+|+...... . ..++ ...+.++|.||....
T Consensus 275 aDlvl~lG~~~~~~~-~-~~~~----~~~~~~~i~vd~d~~ 309 (432)
T TIGR00173 275 PDLVIRFGGPPVSKR-L-RQWL----ARQPAEYWVVDPDPG 309 (432)
T ss_pred CCEEEEeCCCcchhH-H-HHHH----hCCCCcEEEECCCCC
Confidence 999999998753321 1 1122 124578999997543
No 334
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=77.52 E-value=0.93 Score=40.56 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.5
Q ss_pred cccccccccccccCcccccc
Q 004627 253 TSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~ 272 (741)
.|..||.|+++||.+|+...
T Consensus 52 ~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09623 52 KCVKCYICWKFCPEPAIYIK 71 (105)
T ss_pred cCccccchhhhCCHhheEec
Confidence 59999999999999998643
No 335
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=77.17 E-value=1.2 Score=56.49 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.3
Q ss_pred cccccccccccccCcccccc
Q 004627 253 TSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~ 272 (741)
.|..||.|+.+||++||...
T Consensus 684 ~Ci~Cg~C~~vCP~~ai~~~ 703 (1165)
T TIGR02176 684 NCIQCNQCAFVCPHAAIRPK 703 (1165)
T ss_pred cCCCccchHHhcChhhcccc
Confidence 59999999999999999864
No 336
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=76.83 E-value=6.3 Score=46.24 Aligned_cols=108 Identities=17% Similarity=0.066 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
.++++.+++.|.+. ++..++.|.... ......+.+|++++|.+.+.+...-. .+...+|.....+. ...-+
T Consensus 194 ~~~i~~~a~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l 271 (561)
T PRK06048 194 PQQIKRAAELIMKA--ERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTKYANYAI 271 (561)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCHHHHHHH
Confidence 56899999999876 567777775432 22344678999999998775433211 11112222111111 12346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++||+||++|+............ . ..+.++|.||...
T Consensus 272 ~~aD~vl~lG~~~~~~~~~~~~~----~-~~~~~~I~id~d~ 308 (561)
T PRK06048 272 QESDLIIAVGARFDDRVTGKLAS----F-APNAKIIHIDIDP 308 (561)
T ss_pred HhCCEEEEECCCCCccccCChhh----c-CCCCeEEEEECCH
Confidence 89999999999864432211111 1 2457899998654
No 337
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.67 E-value=6.1 Score=46.71 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCC--C-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Cc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLS--D-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SI 427 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~--~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~ 427 (741)
..++++.+++.|.+. ++..++.|... . .+....+.+|++.+|.+.+.+...-. .+....|.....+. ..
T Consensus 198 ~~~~l~~a~~~L~~A--~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~ 275 (595)
T PRK09107 198 DAEAITEAVELLANA--KRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEAN 275 (595)
T ss_pred CHHHHHHHHHHHHhC--CCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCCccHHHH
Confidence 357899999999886 56777777543 1 23456789999999998765433211 11111221111111 12
Q ss_pred cccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 428 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 428 ~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
.-+++||+||++|+...+........+ ..+.++|.||....
T Consensus 276 ~~l~~aDlvL~lG~~~~~~~~~~~~~~-----~~~~~~I~id~d~~ 316 (595)
T PRK09107 276 MAMHDCDVMLCVGARFDDRITGRLDAF-----SPNSKKIHIDIDPS 316 (595)
T ss_pred HHHHhCCEEEEECCCCCccccCchhhc-----CCCCeEEEEECCHH
Confidence 346899999999987533222111111 14568999997544
No 338
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.17 E-value=6.7 Score=46.30 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
+++++.+++.|++. ++..++.|.... ....-.+.+|++.+|.+.+.+...-. .+...+|..+..+. ...-+
T Consensus 208 ~~~i~~~~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~ 285 (587)
T PRK06965 208 SGQIRKAVSLLLSA--KRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAM 285 (587)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCHHHHHHH
Confidence 67899999999986 456677775442 23345678999999988665433211 11111221111111 12346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++||+||++|+............ +..++.++|.||...
T Consensus 286 ~~aDlvl~lG~~~~~~~~~~~~~----~~~~~~~~i~id~d~ 323 (587)
T PRK06965 286 QHCDVLIAIGARFDDRVIGNPAH----FASRPRKIIHIDIDP 323 (587)
T ss_pred HhCCEEEEECCCCcccccCChhh----cCCCCceEEEEeCCH
Confidence 89999999998753321100101 112357899998754
No 339
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=75.73 E-value=6.7 Score=45.78 Aligned_cols=106 Identities=21% Similarity=0.145 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Cccccc
Q 004627 359 DALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGLE 431 (741)
Q Consensus 359 eAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di~ 431 (741)
++++.+++.|++. ++..++.|+.. ..+..-.+.+|++++|.+.+.+..... .+...+|..+..+. ...-++
T Consensus 188 ~~i~~aa~~L~~A--krPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 188 EAIRKAAELLAEA--KRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHHHHHHHHhC--CCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHHHHHHhh
Confidence 8999999999987 45666776543 223334578999999998776544321 11112232223332 223457
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+||+||++|+.+-+..+. +..... +.. |+.||...
T Consensus 266 ~aDlll~vG~rf~~~~~~----~~~f~~-~~~-ii~iDidp 300 (550)
T COG0028 266 EADLLLAVGARFDDRVTG----YSGFAP-PAA-IIHIDIDP 300 (550)
T ss_pred cCCEEEEecCCCcccccc----hhhhCC-cCC-EEEEeCCh
Confidence 899999999987654433 222222 223 88888764
No 340
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.67 E-value=5.9 Score=47.14 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=36.6
Q ss_pred cCceEEEEeccCccC---------ccCCCC-CCeEEEEcccCCccccccceeccCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPN-DAFVVYQGHHGDHGVYRANVILPASA 618 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k-~~fvV~~d~~~~eta~~ADvVLP~a~ 618 (741)
...++++++|+||.. .++.++ ..-+|++|+..++|+..||+.||...
T Consensus 168 ~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irP 224 (649)
T cd02752 168 KNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRS 224 (649)
T ss_pred hcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCC
Confidence 457899999999841 223333 45689999999999999999999764
No 341
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=75.60 E-value=9.1 Score=45.17 Aligned_cols=108 Identities=12% Similarity=-0.004 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCCC--cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di 430 (741)
++.++.+++.|++. ++..+++|.... ....-.+.+|++.+|.+.+.+...-.. +...+|.....+.. ..-+
T Consensus 204 ~~~v~~a~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l 281 (585)
T CHL00099 204 IKRIEQAAKLILQS--SQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAV 281 (585)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCCCCCCCHHHHHHH
Confidence 56788888888876 567777776542 233456789999999987754332111 11112221111111 1245
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
.+||+||++|+............ . .++.++|.||...
T Consensus 282 ~~aDlvL~lG~~~~~~~~~~~~~----~-~~~~~~i~id~d~ 318 (585)
T CHL00099 282 SECDLLIALGARFDDRVTGKLDE----F-ACNAQVIHIDIDP 318 (585)
T ss_pred HhCCEEEEECCCCcccccCCHhH----c-CCCCeEEEEECCH
Confidence 89999999998753322111111 1 2467899998654
No 342
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=75.28 E-value=1.2 Score=49.62 Aligned_cols=26 Identities=23% Similarity=0.589 Sum_probs=20.1
Q ss_pred cccccccCCcccccchhHHHhhhhcCcceeee
Q 004627 204 GPLVKTVMTRCIQCTRCVRFATEVAGVQDLGM 235 (741)
Q Consensus 204 ~p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~ 235 (741)
.|.| .++.||+||-||+-||. +++.+
T Consensus 44 kpvI--sE~lCiGCGICvkkCPF----~AI~I 69 (591)
T COG1245 44 KPVI--SEELCIGCGICVKKCPF----DAISI 69 (591)
T ss_pred Ccee--EhhhhccchhhhccCCc----ceEEE
Confidence 3544 68999999999999986 55544
No 343
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=75.16 E-value=8.8 Score=45.09 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
++.++.+++.|.+. ++..+++|.... ....-.+.+|++.+|.+.+.+...-. .+...+|..+..+. ...-+
T Consensus 197 ~~~i~~~~~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~ 274 (566)
T PRK07282 197 DMQIKKILKQLSKA--KKPVILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAM 274 (566)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECCCcCcccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCHHHHHHH
Confidence 56788999999876 567777775432 12334578999999988765533211 11112222111121 12346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++||+||++|+...+........+ ....++|.||...
T Consensus 275 ~~aD~vl~lG~~l~~~~~~~~~~~-----~~~~~~i~id~d~ 311 (566)
T PRK07282 275 TEADFMINIGSRFDDRLTGNPKTF-----AKNAKVAHIDIDP 311 (566)
T ss_pred HhCCEEEEECCCCCccccCChhhc-----CCCCeEEEEECCH
Confidence 899999999998644322111111 1356899998653
No 344
>PLN02470 acetolactate synthase
Probab=75.06 E-value=8.1 Score=45.58 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCCC--ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTS--ISGLE 431 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~~--~~di~ 431 (741)
+++++.+++.|.+. ++..+++|.... ...-.+.+|++.+|.+.+.+...-. .+...+|.....+.. -..++
T Consensus 202 ~~~i~~~~~~L~~A--~rPvI~~G~g~~-~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~ 278 (585)
T PLN02470 202 KSQLEQIVRLISES--KRPVVYVGGGCL-NSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVD 278 (585)
T ss_pred HHHHHHHHHHHHcC--CCCEEEECCChh-hhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHH
Confidence 67899999999876 567778876542 2334678899999987664433211 111112211111111 24468
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+||+||++|+............+ . ...++|.||...
T Consensus 279 ~aDlvl~lG~~l~~~~~~~~~~~----~-~~~~~I~id~d~ 314 (585)
T PLN02470 279 SADLLLAFGVRFDDRVTGKLEAF----A-SRASIVHIDIDP 314 (585)
T ss_pred hCCEEEEECCCCcccccCChhhc----C-CCCeEEEEECCH
Confidence 99999999986433221111111 1 346899999754
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=74.73 E-value=1.2 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=19.3
Q ss_pred cccCCcccccchhHHHhhhhcCcceeee
Q 004627 208 KTVMTRCIQCTRCVRFATEVAGVQDLGM 235 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~i~g~~~l~~ 235 (741)
.+.++.||+||-||+.||. +++.+
T Consensus 45 ~~~e~~c~~c~~c~~~cp~----~a~~i 68 (590)
T PRK13409 45 VISEELCIGCGICVKKCPF----DAISI 68 (590)
T ss_pred eeeHhhccccccccccCCc----ceEEE
Confidence 3468999999999999986 55554
No 346
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=74.66 E-value=8.3 Score=45.35 Aligned_cols=109 Identities=11% Similarity=-0.001 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Cccc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISG 429 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~d 429 (741)
.+++++.+++.|++. ++..+++|.... ....-.+.+|++++|.+.+.+...-. .+...+|.....+. ...-
T Consensus 192 ~~~~i~~~~~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~ 269 (572)
T PRK08979 192 HKGQIKRGLQALLAA--KKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHGRYEANMA 269 (572)
T ss_pred CHHHHHHHHHHHHhC--CCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCccCCCHHHHHH
Confidence 467899999999876 567777775432 12334578999999998775543211 11111221111121 1234
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++||+||++|+...+.....+.. . ..+.|+|.||...
T Consensus 270 ~~~aD~vl~vG~~~~~~~~~~~~~----~-~~~~~~i~id~d~ 307 (572)
T PRK08979 270 MHNADLIFGIGVRFDDRTTNNLEK----Y-CPNATILHIDIDP 307 (572)
T ss_pred HHhCCEEEEEcCCCCccccCchhh----c-CCCCeEEEEECCH
Confidence 689999999998754332111111 1 1456899998753
No 347
>PRK08764 ferredoxin; Provisional
Probab=74.53 E-value=2.7 Score=39.40 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.9
Q ss_pred cccccccccccccCcccccc
Q 004627 253 TSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~ 272 (741)
.|..||.|+++||++||...
T Consensus 86 ~Ci~C~~Cv~aCp~~ai~~~ 105 (135)
T PRK08764 86 DCIGCTKCIQACPVDAIVGG 105 (135)
T ss_pred cCcCcchHHHhCChhhcCcc
Confidence 59999999999999999754
No 348
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=74.38 E-value=7.1 Score=41.92 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=45.6
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcc-cccccCCCCCCCEEEccc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKP-VASCAMPALPGMKIKTDT 144 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~-~~aC~~~v~~gm~v~t~~ 144 (741)
++|+|||+++++++|.||.+.+...+++. ....|+||+.--+ -.=-.+++++|.+|..-+
T Consensus 1 M~I~VNGk~~el~e~~TL~dLL~~L~i~~---------------~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 1 MRIRLNGEPRQVPAGLTIAALLAELGLAP---------------KKVAVERNLEIVPRSEYGQVALEEGDELEIVH 61 (326)
T ss_pred CEEEECCEEEecCCCCcHHHHHHHcCCCC---------------CeEEEEECCEECCHHHcCccccCCCCEEEEEE
Confidence 36899999999999999999999998751 1358899985211 112677889999887633
No 349
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=74.29 E-value=1.3 Score=46.49 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.7
Q ss_pred ccccccccccccccCcccccc
Q 004627 252 MTSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 252 ~~c~~cg~cv~vCP~gAl~~~ 272 (741)
..|..||.|++.||++||+..
T Consensus 193 ~kc~~c~~cv~~cp~~Ai~~~ 213 (354)
T COG2768 193 EKCYDCGLCVKICPVGAITLT 213 (354)
T ss_pred ecccccchhhhhCCCcceecc
Confidence 359999999999999999865
No 350
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=73.96 E-value=1.3 Score=46.43 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=18.5
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..|+.|+++||.+++....
T Consensus 170 ~C~~C~~C~~~CP~~vi~~d~ 190 (259)
T cd07030 170 DCDGCGKCVEECPRGVLELEE 190 (259)
T ss_pred hCCChHHHHHhCCccceEccC
Confidence 499999999999999997654
No 351
>PRK08617 acetolactate synthase; Reviewed
Probab=73.29 E-value=9.3 Score=44.71 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcchhh-----hhhhcCcccCCCc--cc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQSN-----ADLRSGYIMNTSI--SG 429 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~d 429 (741)
++.++.+++.|.+. ++..+++|... .....-.+.+|++.+|.+.+.+...-.... ..+|....++... .-
T Consensus 188 ~~~i~~~~~~L~~A--krPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~ 265 (552)
T PRK08617 188 PEDINYLAELIKNA--KLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPGDEL 265 (552)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCcchhhHHHHHHHHHHHhCCCEEeccccCccCCCCCchhhccCCcCCCcHHHHHH
Confidence 45678888888875 56777777653 223345678999999988765433211111 1223222222111 23
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++||+||.+|+.+....+..+. ...+.++|.||...
T Consensus 266 ~~~aDlvl~lG~~~~~~~~~~~~------~~~~~~~i~id~d~ 302 (552)
T PRK08617 266 LKKADLVITIGYDPIEYEPRNWN------SEGDATIIHIDVLP 302 (552)
T ss_pred HHhCCEEEEecCccccccccccc------cCCCCcEEEEeCCh
Confidence 68999999999876433321111 01245899998754
No 352
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=73.21 E-value=1.3 Score=49.77 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=27.8
Q ss_pred cccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCce
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIR 300 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~ 300 (741)
.|..|+.|+++||++|+...+.... ..+ .....|..|...|...
T Consensus 11 ~Ci~C~~C~~~CP~~ai~~~~~~~~-i~~---~~C~~C~~C~~~CP~~ 54 (411)
T TIGR03224 11 ICIRCNTCEETCPIDAITHDDRNYV-VKA---DVCNGCMACVSPCPTG 54 (411)
T ss_pred cCcCccchhhhCCcccEeccCCceE-eCc---ccCcCHHHHHhhcCcc
Confidence 4999999999999999976543211 011 1233455566667543
No 353
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=72.70 E-value=10 Score=44.62 Aligned_cols=105 Identities=23% Similarity=0.210 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCC-CccccccCCE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNT-SISGLEKADC 435 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~-~~~di~~ad~ 435 (741)
++.++.+++.|++. ++..++.|+.. ..+....+.+|++++|.+.+.+...-.....+.. ..+|. .-.-++++|+
T Consensus 207 ~~~~~~~~~~L~~A--krPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp--~~~G~~~~~~~~~aDl 282 (569)
T PRK08327 207 PEDIARAAEMLAAA--ERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHP--LHLGPDPRADLAEADL 282 (569)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCCc--cccccccchhhhhCCE
Confidence 57788888999886 45667666543 2233456789999999987754332111111110 01121 2234589999
Q ss_pred EEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 436 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 436 Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
||++|+..... +. ... ...+.++|.||....
T Consensus 283 vl~lG~~l~~~-~~---~~~---~~~~~~vi~Id~d~~ 313 (569)
T PRK08327 283 VLVVDSDVPWI-PK---KIR---PDADARVIQIDVDPL 313 (569)
T ss_pred EEEeCCCCCCc-cc---ccc---CCCCCeEEEEeCChh
Confidence 99999875321 11 111 124578999987543
No 354
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=72.63 E-value=0.83 Score=49.31 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.4
Q ss_pred CCccccccccccccccCc
Q 004627 250 KLMTSELSGNVIDICPVG 267 (741)
Q Consensus 250 ~~~~c~~cg~cv~vCP~g 267 (741)
+..+|..||.|.+.||.+
T Consensus 349 ~as~CieCgqCl~~CPq~ 366 (391)
T COG1453 349 KASDCIECGQCLEKCPQH 366 (391)
T ss_pred cccccchhhhhhhcCCCc
Confidence 355799999999999976
No 355
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=72.30 E-value=12 Score=44.29 Aligned_cols=109 Identities=13% Similarity=-0.007 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCccc-CCC--cc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIM-NTS--IS 428 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~-~~~--~~ 428 (741)
..++++.+++.|.+. ++..+++|.... .+....+.+|++.+|.+.+.+...- + .+...+|..+.. +.. ..
T Consensus 188 ~~~~i~~~~~~L~~A--krPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~ 265 (588)
T TIGR01504 188 TRAQIEKAVEMLNAA--ERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNA 265 (588)
T ss_pred CHHHHHHHHHHHHhC--CCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHHH
Confidence 367899999999876 566777775542 2344568899999999877553321 1 111222221111 111 13
Q ss_pred ccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 429 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 429 di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
-+++||+||++|+............ . ..+.++|.||...
T Consensus 266 ~l~~aD~iL~lG~~l~~~~t~~~~~----~-~~~~~~I~id~d~ 304 (588)
T TIGR01504 266 TLLESDFVFGIGNRWANRHTGSVDV----Y-TEGRKFVHVDIEP 304 (588)
T ss_pred HHHhCCEEEEECCCCCccccCcccc----c-CCCCeEEEeeCCH
Confidence 4689999999998753322111111 1 2467899998643
No 356
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=72.28 E-value=10 Score=44.53 Aligned_cols=109 Identities=12% Similarity=0.013 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCCC--cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTS--ISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~~--~~di 430 (741)
.+.++.+++.|.+. ++..++.|.... ......+.+|++.+|.+.+.+...-. .+...+|.....+.. ..-+
T Consensus 198 ~~~i~~~~~~L~~A--krPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l 275 (564)
T PRK08155 198 EESIRDAAAMINAA--KRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYIL 275 (564)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHH
Confidence 56788888888875 566777775432 22345678999999998775433211 111112211111111 1346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+++|+||.+|+.+.........+ . ....++|.||....
T Consensus 276 ~~aDlvl~lG~~~~~~~~~~~~~----~-~~~~~~I~id~d~~ 313 (564)
T PRK08155 276 QEADLLIVLGARFDDRAIGKTEQ----F-CPNAKIIHVDIDRA 313 (564)
T ss_pred HhCCEEEEECCCCCccccCCHhh----c-CCCCeEEEEECCHH
Confidence 89999999998754432211111 1 24578999987543
No 357
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=72.23 E-value=9 Score=44.68 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcchh-----hhhhhcCcccCC--Cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQS-----NADLRSGYIMNT--SISG 429 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~d 429 (741)
+++++.+++.|++. ++..+++|.... .+..-.+.+|++.+|.+.+.+...-... ...+|..+.++. ...-
T Consensus 182 ~~~i~~~~~~l~~A--~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~i~~~~~~~~~G~~G~~~~~~~~~~ 259 (539)
T TIGR02418 182 DDAIDEVAEAIQNA--KLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAGAVSRELEDHFFGRVGLFRNQPGDRL 259 (539)
T ss_pred HHHHHHHHHHHHcC--CCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCcCCCCCCChhhcccCcCCCcHHHHHH
Confidence 56788888888875 466777775432 2334567899999998877543321111 111222111221 1234
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+++||+||.+|+++....+..+. .....++|.||....
T Consensus 260 ~~~aDlvl~lG~~~~~~~~~~~~------~~~~~~~i~id~d~~ 297 (539)
T TIGR02418 260 LKQADLVITIGYDPIEYEPRNWN------SENDATIVHIDVEPA 297 (539)
T ss_pred HHhCCEEEEecCcccccCccccC------cCCCCeEEEEeCChH
Confidence 68999999999886433221111 112468999987544
No 358
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=72.22 E-value=8 Score=45.82 Aligned_cols=50 Identities=28% Similarity=0.177 Sum_probs=38.1
Q ss_pred cCceEEEEeccCccC---------ccCCCCC-CeEEEEcccCCccccccceeccCCCCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPND-AFVVYQGHHGDHGVYRANVILPASAFSE 621 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~-~fvV~~d~~~~eta~~ADvVLP~a~~~E 621 (741)
...+.++++|.||.. .++.++. .-+|++|+..++|+..||+.||.....|
T Consensus 361 ~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~Pgtd 420 (603)
T TIGR01973 361 EEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFHPGLS 420 (603)
T ss_pred HhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeecCCcc
Confidence 457899999999942 2233333 5689999999999999999998766544
No 359
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=72.16 E-value=1.3 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.5
Q ss_pred cccccccccccccCcccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKPF 274 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~ 274 (741)
.|..||.|+.+||++||+....
T Consensus 13 ~C~gCg~C~~~CP~~aI~~~~~ 34 (341)
T PRK09326 13 VCTACGACEAVCPIGAITVDKK 34 (341)
T ss_pred cCcChHHHHHhCCHhhhecccC
Confidence 4999999999999999987653
No 360
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=71.61 E-value=8.3 Score=45.61 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCCC--cccc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGL 430 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di 430 (741)
.+++++.+++.|++. ++..+++|.... ...-.+.+|++.+|.+.+.+...-.. +...+|..+..+.. ..-+
T Consensus 194 ~~~~i~~a~~~L~~A--krPvi~~G~g~~-~a~~~l~~lae~~~~PV~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~ 270 (597)
T PRK08273 194 YDEDLRRAAEVLNAG--RKVAILVGAGAL-GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSYELM 270 (597)
T ss_pred CHHHHHHHHHHHhcC--CCEEEEECcchH-hHHHHHHHHHHHhCCceeecccCcccCCCCCccceecCCCCccHHHHHHH
Confidence 367788889999876 567788876653 34456889999999887655332111 11112221111211 1336
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++||+||.+|+..... ..+. ..+++++|.||...
T Consensus 271 ~~aDlvl~lG~~~~~~-----~~~~---~~~~~~~i~Id~d~ 304 (597)
T PRK08273 271 RECDTLLMVGSSFPYS-----EFLP---KEGQARGVQIDIDG 304 (597)
T ss_pred HhCCEEEEeCCCCCHH-----hcCC---CCCCCeEEEEeCCH
Confidence 8999999999975211 1111 12357899998754
No 361
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=71.19 E-value=20 Score=39.99 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=36.6
Q ss_pred CceEEEEeccCccCc-----------------cCCCCCCeEEEEcccCCccccccceeccCCCCCC
Q 004627 573 SAKFVYLMGADDVDL-----------------EKLPNDAFVVYQGHHGDHGVYRANVILPASAFSE 621 (741)
Q Consensus 573 ~ik~l~l~g~np~~~-----------------~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 621 (741)
+.+.++++|.||... .+-++..-+|++|+..++|+..||..||...-.+
T Consensus 137 ~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~i~pgtd 202 (421)
T TIGR03129 137 RADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQIKPGSD 202 (421)
T ss_pred cCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceeccCCCCc
Confidence 578999999998421 0102334688999999999999999999776433
No 362
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=70.87 E-value=2.1 Score=53.67 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=33.4
Q ss_pred HHHHHHHCCCCccccccCCC--CCCccccCccEEEEcCCCcccccccC-CCCCCCEEEc
Q 004627 87 VLQACEVAGVDIPRFCYHSR--LSIAGNCRMCLVEVEKSPKPVASCAM-PALPGMKIKT 142 (741)
Q Consensus 87 vl~a~~~~g~~ip~~C~~~~--l~~~G~C~~C~V~v~~~~~~~~aC~~-~v~~gm~v~t 142 (741)
+.++++..|+.+ ...... ..+.|.|+.|.|.+.+ +...+|.- ||=++-.|.-
T Consensus 196 v~~~~~~~gi~~--~vSle~~M~cG~G~Cg~C~v~~~~--~~~~~C~DGPvF~~~~v~~ 250 (1006)
T PRK12775 196 CVETTRPFGVKT--MVSLNAIMVDGTGMCGSCRVTVGG--EVKFACVDGPDFDGHKVDF 250 (1006)
T ss_pred HHHHHHHCCCcE--EECChhheeCccceeCCCEeeeCC--ceEEEeCCCCeEEccEeeH
Confidence 455566677732 111111 1378999999999977 45678965 6777777765
No 363
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=70.62 E-value=1.3 Score=48.01 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=40.5
Q ss_pred CcccccchhHHHhhhhcCcceeeeecCCCCceeeeccc-CCccccccccccccccCcccccccccccccccc
Q 004627 212 TRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVE-KLMTSELSGNVIDICPVGALTSKPFAFKARNWE 282 (741)
Q Consensus 212 ~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~-~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~we 282 (741)
.+||.|++| +.|.++.|...++ .+..... ...+|..|.-|+..||+.++....+.--.-.||
T Consensus 2 s~~~~~~~~-k~~~~~~g~~ei~--------~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~~~~~~~le 64 (411)
T COG4624 2 KPLQVVSVE-KDDETYDGKYEIS--------SMLEKISISLSDCLACSGCITSCEVKAISLQSGKKVLEELE 64 (411)
T ss_pred CccccCccc-cccccccceEEEe--------ecccccccchhhhhhhhccccCChHHhhhhcchHHHHHHhh
Confidence 579999999 9999888844443 1111111 122577777799999999887776543344444
No 364
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=70.42 E-value=13 Score=43.81 Aligned_cols=109 Identities=14% Similarity=-0.052 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
+++++.+++.|++. ++..+++|.... ......+.+|++.+|.+.+.+...-. .+...+|.....+. ...-+
T Consensus 201 ~~~~~~~~~~L~~A--~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l 278 (570)
T PRK06725 201 SMKLREVAKAISKA--KRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAV 278 (570)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCHHHHHHH
Confidence 56789999999876 567777775542 12344678899999988765433211 11111221111111 12456
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
++||+||++|+...+........ . ....++|.||....
T Consensus 279 ~~aDlil~vG~~~~~~~~~~~~~----~-~~~~~~i~id~d~~ 316 (570)
T PRK06725 279 TECDLLLALGVRFDDRVTGKLEL----F-SPHSKKVHIDIDPS 316 (570)
T ss_pred HhCCEEEEeCCCCCccccCcccc----c-CCCCeEEEEeCCHH
Confidence 89999999998753322111111 1 13468999986543
No 365
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=70.40 E-value=12 Score=44.00 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
+++++.+++.|.+. ++..+++|.... ......+.+|++.+|.+.+.+...-. .+...+|.....+. ...-+
T Consensus 190 ~~~i~~~~~~L~~A--~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l 267 (563)
T PRK08527 190 SRQIKKAAEAIKEA--KKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAM 267 (563)
T ss_pred HHHHHHHHHHHHcC--CCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCHHHHHHH
Confidence 67788888999876 567777775432 22345678999999988765443221 11111222111111 12346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
++||+||++|+............ . ....++|.||..
T Consensus 268 ~~aD~vl~lG~~l~~~~~~~~~~----~-~~~~~~i~id~d 303 (563)
T PRK08527 268 SECDLLISLGARFDDRVTGKLSE----F-AKHAKIIHVDID 303 (563)
T ss_pred HhCCEEEEeCCCCCccccCChhh----c-CCCCeEEEEECC
Confidence 89999999998753322111111 1 245689999865
No 366
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=70.24 E-value=11 Score=44.26 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
++.++.+++.|.+. ++..++.|.... ....-.+.+|++.+|.+.+.+...-. .+...+|..+..+. ...-+
T Consensus 193 ~~~i~~~~~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l 270 (574)
T PRK06466 193 SGQIRKAVEMLLAA--KRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAM 270 (574)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCccCCCCCCCChhhcCCCccccCHHHHHHH
Confidence 56788899999876 456677775432 12234678999999998775544211 11112221111111 11346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
++||+||++|+.+.......+.. . ..+.++|.||....
T Consensus 271 ~~aD~il~vG~~~~~~~~~~~~~----~-~~~~~vi~id~d~~ 308 (574)
T PRK06466 271 HHADVILAVGARFDDRVTNGPAK----F-CPNAKIIHIDIDPA 308 (574)
T ss_pred HhCCEEEEECCCCCccccCchhh----c-CCCCeEEEEECCHH
Confidence 89999999998753322111111 1 13568999987543
No 367
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=70.21 E-value=2.1 Score=47.43 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=17.3
Q ss_pred cccccccccccccCccccc
Q 004627 253 TSELSGNVIDICPVGALTS 271 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~ 271 (741)
.|..||.|+++||++|+..
T Consensus 8 kCi~Cg~Cv~~CP~~ai~~ 26 (374)
T TIGR02512 8 KCIGCGRCVRACTNVQIVG 26 (374)
T ss_pred hCCcChHhhhhCCHhhccc
Confidence 4999999999999999873
No 368
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=69.99 E-value=1.8 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.5
Q ss_pred cccccCCcccccchhHHHhhh
Q 004627 206 LVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.+.+|.++|++|+.|+.+||.
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~ 215 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPT 215 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCH
Confidence 355789999999999999986
No 369
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=69.68 E-value=2 Score=46.42 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=17.1
Q ss_pred cccccccccccccCccccc
Q 004627 253 TSELSGNVIDICPVGALTS 271 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~ 271 (741)
.|..|+.|+.+||.+|+..
T Consensus 248 ~Ci~C~~C~~~CP~~ai~~ 266 (312)
T PRK14028 248 KCIMCRKCWLYCPDDAIIE 266 (312)
T ss_pred cCcCcccccccCChhhhhc
Confidence 5999999999999999853
No 370
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=69.60 E-value=1.9 Score=38.20 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=17.8
Q ss_pred cccccCCcccccchhHHHhhh
Q 004627 206 LVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.+.++.+.|+.|+.|+.+||.
T Consensus 60 ~~~i~~~~C~~Cg~C~~~CP~ 80 (101)
T TIGR00402 60 TVEFDNAECDFCGKCAEACPT 80 (101)
T ss_pred eeEecCccCcCccChhhHCCc
Confidence 345677899999999999987
No 371
>PRK08611 pyruvate oxidase; Provisional
Probab=69.05 E-value=14 Score=43.52 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Cccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGLE 431 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di~ 431 (741)
++.++.+++.|++. ++..++.|+... ...-.+.+|++.+|.+.+.+...-. .+...+|....++. ...-++
T Consensus 190 ~~~i~~~~~~L~~A--krPvil~G~g~~-~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~ 266 (576)
T PRK08611 190 PKDIKKAAKLINKA--KKPVILAGLGAK-HAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQ 266 (576)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECcCcc-hHHHHHHHHHHHhCCCEEEccccccccCCCCccccccCCCCCcHHHHHHHH
Confidence 35677778888865 466777776443 2334678999999988775433211 11111221111121 123468
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++|+||.+|+..... . + .....++|.||...
T Consensus 267 ~aDlvl~iG~~~~~~-~----~-----~~~~~~~i~id~d~ 297 (576)
T PRK08611 267 EADLLIMVGTNYPYV-D----Y-----LPKKAKAIQIDTDP 297 (576)
T ss_pred hCCEEEEeCCCCCcc-c----c-----CCCCCcEEEEeCCH
Confidence 999999999864211 0 1 12346899998754
No 372
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=69.04 E-value=23 Score=39.57 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=35.2
Q ss_pred CceEEEEeccCccCc------c------C-C----CCCCeEEEEcccCCccccccceeccCCCC
Q 004627 573 SAKFVYLMGADDVDL------E------K-L----PNDAFVVYQGHHGDHGVYRANVILPASAF 619 (741)
Q Consensus 573 ~ik~l~l~g~np~~~------~------a-l----~k~~fvV~~d~~~~eta~~ADvVLP~a~~ 619 (741)
+.+.++++|.||... . + . ++..-+|++|+..++|+..||..||...-
T Consensus 131 ~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i~pg 194 (415)
T cd02761 131 RADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQIDPG 194 (415)
T ss_pred cCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEecCCC
Confidence 578999999998421 0 0 1 23346889999999999999999987643
No 373
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=68.95 E-value=10 Score=44.68 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCC--Cccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGLE 431 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di~ 431 (741)
+++++.+++.|++. ++..++.|.... .....+.+|++++|.+.+.+...-.. +...+|..+..+. ...-++
T Consensus 187 ~~~v~~~~~~L~~A--krPvil~G~g~~-~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~ 263 (575)
T TIGR02720 187 VEAVTRAVQTLKAA--ERPVIYYGIGAR-KAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGSAYRVAQKPANEALF 263 (575)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECcchh-hHHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCcCCCcHHHHHHHH
Confidence 46799999999886 567777776543 23346889999999987755432111 1111221111111 123468
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
++|+||++|+..... .. .. .. ..+.++|.||+...
T Consensus 264 ~aDlvl~vG~~~~~~-~~-~~----~~-~~~~~~I~id~d~~ 298 (575)
T TIGR02720 264 QADLVLFVGNNYPFA-EV-SK----AF-KNTKYFIQIDIDPA 298 (575)
T ss_pred hCCEEEEeCCCCCcc-cc-cc----cc-CCCceEEEEeCCHH
Confidence 999999999974211 11 11 11 13455688987543
No 374
>PRK13795 hypothetical protein; Provisional
Probab=68.75 E-value=1.5 Score=52.14 Aligned_cols=46 Identities=15% Similarity=-0.002 Sum_probs=28.1
Q ss_pred cccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCce
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIR 300 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~ 300 (741)
.|..||.|+++||++||............. .....|..|...|...
T Consensus 582 ~C~~Cg~C~~~CP~~ai~~~~~~~~~~id~--~~C~~Cg~C~~aCP~~ 627 (636)
T PRK13795 582 ECVGCGVCVGACPTGAIRIEEGKRKISVDE--EKCIHCGKCTEVCPVV 627 (636)
T ss_pred cCCCHhHHHHhCCcccEEeecCCceEEech--hhcCChhHHHhhcCCC
Confidence 599999999999999987654321111000 1223455566677543
No 375
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=68.75 E-value=2.1 Score=40.04 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCC-C-ccccccC
Q 004627 361 LAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT-S-ISGLEKA 433 (741)
Q Consensus 361 l~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~-~-~~di~~a 433 (741)
++.+++.|++. ++..++.|.... ....-.+.+|++++|.+.+.+...-.. +...+|..+.++. . .+-+++|
T Consensus 1 i~~~~~~L~~A--~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~a 78 (137)
T PF00205_consen 1 IDEAADLLSSA--KRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQA 78 (137)
T ss_dssp HHHHHHHHHH---SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHS
T ss_pred CHHHHHHHHhC--CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCC
Confidence 46788889887 567777774321 112235789999999876544332111 1111221111111 1 2335899
Q ss_pred CEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCC
Q 004627 434 DCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 474 (741)
Q Consensus 434 d~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~ 474 (741)
|+||++|+.+......- ... .. ....++|.||+....
T Consensus 79 Dlvl~iG~~~~~~~~~~-~~~--~~-~~~~~~I~I~~d~~~ 115 (137)
T PF00205_consen 79 DLVLAIGTRLSDFNTYG-FSP--AF-NPDAKIIQIDPDPAE 115 (137)
T ss_dssp SEEEEESSSSSTTTTTT-TTG--CS-TTTSEEEEEESSGGG
T ss_pred CEEEEECCCCccccccc-ccc--cc-CCCCEEEEEECCHHH
Confidence 99999998764422111 000 11 133499999986543
No 376
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=68.55 E-value=8.5 Score=45.23 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCc-cccccCCE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSI-SGLEKADC 435 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~-~di~~ad~ 435 (741)
++.++.+++.|.+. ++..++.|... .......+.+|++++|.+.+.+...-.....+.. ...|... .-+++||+
T Consensus 200 ~~~l~~~~~~L~~A--krPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hp--l~~G~~~~~~l~~aDl 275 (569)
T PRK09259 200 PEAVDRALDLLKKA--KRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHP--QSAAAARSLALANADV 275 (569)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCCh--hhhhHHHHHHHhcCCE
Confidence 57788888999876 56677777443 2233456789999999987755432111110000 0011111 23789999
Q ss_pred EEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 436 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 436 Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
||++|+.........+.. .+ ..+.++|.||...
T Consensus 276 vl~lG~~~~~~~~~~~~~---~~-~~~~~ii~Id~d~ 308 (569)
T PRK09259 276 VLLVGARLNWLLSHGKGK---TW-GADKKFIQIDIEP 308 (569)
T ss_pred EEEeCCCCchhcccCchh---cc-CCCCcEEEecCCh
Confidence 999998753322111100 01 1457899998653
No 377
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=68.25 E-value=12 Score=44.18 Aligned_cols=108 Identities=16% Similarity=0.018 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCCC--cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS--ISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~~--~~di 430 (741)
++.++.+++.|.+. ++..++.|.... ......+.+|++.+|.+.+.+...-.. +...+|.....+.. ..-+
T Consensus 190 ~~~i~~~~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l 267 (586)
T PRK06276 190 PLQIKKAAELIAEA--ERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYSV 267 (586)
T ss_pred HHHHHHHHHHHHcC--CCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCCCCHHHHHHH
Confidence 56788888989876 567777775431 122345789999999987754332111 11112221111111 1346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++|+||++|+............ . ..+.+++.||...
T Consensus 268 ~~aD~vl~lG~~~~~~~~~~~~~----~-~~~~~~i~id~d~ 304 (586)
T PRK06276 268 TESDVLIAIGCRFSDRTTGDISS----F-APNAKIIHIDIDP 304 (586)
T ss_pred HcCCEEEEECCCCCccccCCccc----c-CCCCeEEEEECCH
Confidence 89999999998753322111111 1 2456899898653
No 378
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=67.72 E-value=1.8 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.3
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..|+.|+++||.+|+....
T Consensus 149 ~C~~C~~C~~~CP~~ai~~~~ 169 (234)
T TIGR02700 149 RCKGCGICVDACPRSAIDMVD 169 (234)
T ss_pred HCcCcchHHHhCCcccEEecC
Confidence 599999999999999987543
No 379
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=67.18 E-value=13 Score=43.35 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di 430 (741)
.++++.+++.|.+. ++..+++|... .......+.+|++.+|.+.+.+...-.. +...+|.....+. ...-+
T Consensus 183 ~~~l~~~~~~L~~A--krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l 260 (548)
T PRK08978 183 AAELEQARALLAQA--KKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAV 260 (548)
T ss_pred HHHHHHHHHHHHcC--CCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHH
Confidence 56788888888876 56677777532 2223345788999999987654332111 1111221111111 11235
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++|+||++|+....... ..+.. . ....++|.||...
T Consensus 261 ~~aD~vl~lG~~~~~~~~---~~~~~-~-~~~~~~i~id~d~ 297 (548)
T PRK08978 261 QECDLLIAVGARFDDRVT---GKLNT-F-APHAKVIHLDIDP 297 (548)
T ss_pred HhCCEEEEEcCCCCcccc---CCccc-c-CCCCeEEEEECCH
Confidence 799999999987533211 11111 1 2456899998754
No 380
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=67.18 E-value=13 Score=43.47 Aligned_cols=108 Identities=19% Similarity=0.042 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCCC--cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNTS--ISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~~--~~di 430 (741)
+++++.+++.|.+. ++..++.|.... ......+.+|++.+|.+.+.+...-. .+...+|.....+.. ..-+
T Consensus 188 ~~~i~~~~~~L~~A--krPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l 265 (558)
T TIGR00118 188 PLQIKKAAELINLA--KKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAV 265 (558)
T ss_pred HHHHHHHHHHHHhC--CCcEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHHHH
Confidence 46688888888876 567777775432 12345678999999988775433211 111112221111111 2346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++|+||++|+............+ ..+.++|.||...
T Consensus 266 ~~aD~vl~lG~~~~~~~~~~~~~~-----~~~~~~i~id~d~ 302 (558)
T TIGR00118 266 HECDLIIAVGARFDDRVTGNLAKF-----APNAKIIHIDIDP 302 (558)
T ss_pred HhCCEEEEECCCCCccccCchhhc-----CCCCcEEEEeCCH
Confidence 889999999987543221111111 1356899998754
No 381
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=67.00 E-value=15 Score=43.22 Aligned_cols=107 Identities=14% Similarity=0.041 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCC--Cccccc
Q 004627 359 DALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGLE 431 (741)
Q Consensus 359 eAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di~ 431 (741)
+.++.+++.|++. ++..+++|... .......+.+|++++|.+.+.+...- + .+...+|..+..+. ...-+.
T Consensus 203 ~~i~~~~~~L~~A--~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~ 280 (571)
T PRK07710 203 LQIRKLVQAVSVA--KKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALY 280 (571)
T ss_pred HHHHHHHHHHHhC--CCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCHHHHHHHH
Confidence 4578888888875 45667777543 22334457889999998876543321 1 11111222111111 123468
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++|+||.+|+.+...... .... +. ...+++.||...
T Consensus 281 ~aDlvL~lG~~~~~~~~~---~~~~-~~-~~~~~i~id~d~ 316 (571)
T PRK07710 281 ECDLLINIGARFDDRVTG---NLAY-FA-KEATVAHIDIDP 316 (571)
T ss_pred hCCEEEEeCCCCCccccC---chhh-cC-CCCeEEEEECCH
Confidence 999999999875432211 1111 11 356788888653
No 382
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=66.83 E-value=13 Score=43.66 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di 430 (741)
.++++.+++.|.+. ++..+++|.... ......+.+|++.+|.+.+.+...- + .+...+|..+..+. ....+
T Consensus 194 ~~~~~~~~~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~ 271 (572)
T PRK06456 194 RLALKKAAEILINA--ERPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAA 271 (572)
T ss_pred HHHHHHHHHHHHhC--CCcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCCCCCCHHHHHHH
Confidence 46678888888875 567777775432 2233557899999998876543321 1 11111222111121 12346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++||+||++|+...... ..... . ....+.+++.||...
T Consensus 272 ~~aDlvl~lG~~~~~~~-~~~~~--~-~~~~~~~~i~id~d~ 309 (572)
T PRK06456 272 LESDAMLVVGARFSDRT-FTSYD--E-MVETRKKFIMVNIDP 309 (572)
T ss_pred HhCCEEEEECCCCchhh-ccccc--c-ccCCCCeEEEEeCCh
Confidence 79999999998743221 11110 0 112356899998644
No 383
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=66.73 E-value=14 Score=43.94 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
.+.++.+++.|.+. ++..++.|.... ....-.+.+|++.+|.+.+.+...-. .+...+|..+..+. ...-+
T Consensus 218 ~~~i~~~~~~L~~A--krPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l 295 (612)
T PRK07789 218 GKQIREAAKLIAAA--RRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTVAAVAAL 295 (612)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcHHHHHHH
Confidence 46788888888876 567777775542 23345678999999988765433211 11111221111111 12446
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++|+||++|+........ .... . ..+.++|.||...
T Consensus 296 ~~aDlvL~lG~~l~~~~t~---~~~~-~-~~~~~~i~Id~d~ 332 (612)
T PRK07789 296 QRSDLLIALGARFDDRVTG---KLDS-F-APDAKVIHADIDP 332 (612)
T ss_pred HhCCEEEEECCCCCccccC---Chhh-c-CCCCcEEEEECCH
Confidence 8899999999864322110 1111 1 1457899998754
No 384
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=66.71 E-value=2 Score=51.33 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=17.7
Q ss_pred cccccccccccccCcccccc
Q 004627 253 TSELSGNVIDICPVGALTSK 272 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~ 272 (741)
.|+.||.|+++||.+.+...
T Consensus 371 ~CI~CG~Cv~aCP~~llP~~ 390 (695)
T PRK05035 371 PCIRCGACADACPASLLPQQ 390 (695)
T ss_pred hcCCcccHHHHCCccchhhh
Confidence 59999999999999998643
No 385
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=66.54 E-value=13 Score=43.45 Aligned_cols=111 Identities=17% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di 430 (741)
++.++.+++.|.+. ++..++.|.... ......+.+|++.+|.+.+.+...- + .+...+|.....+. ...-+
T Consensus 191 ~~~i~~~~~~L~~A--~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l 268 (557)
T PRK08199 191 AADLARLAELLARA--ERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAARI 268 (557)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHH
Confidence 56778888888876 456677775432 2334567899999999877543321 1 11111222111111 12346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++|+||++|+.+..-.......+... ....+++.||...
T Consensus 269 ~~aDlvl~lG~~~~~~~~~~~~~~~~~--~~~~~~i~vd~d~ 308 (557)
T PRK08199 269 READLVLAVGTRLGEVTTQGYTLLDIP--VPRQTLVHVHPDA 308 (557)
T ss_pred HhCCEEEEeCCCCcccccccccccccc--CCCCeEEEEeCCH
Confidence 799999999987533221111111111 1356899998654
No 386
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=66.36 E-value=1.8 Score=42.12 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred cccccccccccccCccccccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFK 277 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~ 277 (741)
.|..|-.|++.||++||...+-.+.
T Consensus 116 ~ciGCtkCiqaCpvdAivg~~~~mh 140 (198)
T COG2878 116 NCIGCTKCIQACPVDAIVGATKAMH 140 (198)
T ss_pred hccccHHHHHhCChhhhhccchhHH
Confidence 5999999999999999998875543
No 387
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=66.28 E-value=13 Score=43.87 Aligned_cols=102 Identities=10% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCC--Cccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGLE 431 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di~ 431 (741)
+++++.+++.|++. ++..+++|.... ...-.+.+|++.+|.+.+.+...- + .+...+|..+.++. ...-++
T Consensus 188 ~~~i~~a~~~L~~A--~rPvii~G~g~~-~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~ 264 (578)
T PRK06546 188 PAEVRALADAINEA--KKVTLFAGAGVR-GAHAEVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAAHEAMH 264 (578)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECcchH-HHHHHHHHHHHHhCcceEECcccccCCCCCCccccCCCCCCCCHHHHHHHH
Confidence 67889999999976 567777776543 334567899999998876443321 1 11112222111121 123468
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+||+||++|+..... . +. .+.++|.||....
T Consensus 265 ~aDlvl~lG~~~~~~---------~-~~-~~~~~I~vd~d~~ 295 (578)
T PRK06546 265 EADLLILLGTDFPYD---------Q-FL-PDVRTAQVDIDPE 295 (578)
T ss_pred hCCEEEEEcCCCChh---------h-cC-CCCcEEEEeCCHH
Confidence 999999999875311 1 11 3468999986543
No 388
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=65.58 E-value=37 Score=39.21 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=38.8
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 481 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l 481 (741)
.+-+.++++|.||..+.|-. .+++++..++---+|++|+..+.|+.++|+
T Consensus 327 ~~ik~l~~~g~Np~~~~p~~-~~~~~a~l~~~~f~Vv~D~~~teTa~~ADv 376 (501)
T cd02766 327 PPVKALWVYNSNPVAQAPDS-NKVRKGLAREDLFVVVHDQFMTDTARYADI 376 (501)
T ss_pred CCeeEEEEeCCCHHhhCCCH-HHHHHHHhcCCCeEEEEecCcCchHhhccE
Confidence 46899999999999988876 456664443334678889999999988875
No 389
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=65.42 E-value=2.1 Score=46.29 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.6
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..|..|+++||+|||....
T Consensus 186 ~Cg~C~~CldaCPt~Al~~~~ 206 (337)
T COG1600 186 HCGSCTRCLDACPTGALVAPY 206 (337)
T ss_pred cChhhHHHHhhCCcccccCCC
Confidence 388899999999999998765
No 390
>PRK11269 glyoxylate carboligase; Provisional
Probab=64.97 E-value=20 Score=42.26 Aligned_cols=107 Identities=14% Similarity=-0.015 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCccc-CCC--ccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIM-NTS--ISG 429 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~-~~~--~~d 429 (741)
.+.++.+++.|++. ++..++.|.... .+....+.+|++.+|.+.+.+...-. .+....|..+.. +.. ..-
T Consensus 190 ~~~i~~~~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~ 267 (591)
T PRK11269 190 RAQIEKALEMLNAA--ERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNAT 267 (591)
T ss_pred HHHHHHHHHHHHhC--CCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcHHHHHH
Confidence 56788888888876 456677775432 23345678999999988775433211 111122221111 111 123
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
+++||+||.+|+............ . ..+.++|.||..
T Consensus 268 ~~~aDlvl~lG~~~~~~~~~~~~~----~-~~~~~~i~Vd~d 304 (591)
T PRK11269 268 LLASDFVLGIGNRWANRHTGSVEV----Y-TKGRKFVHVDIE 304 (591)
T ss_pred HHhCCEEEEeCCCCCccccCchhh----c-CCCCeEEEeeCC
Confidence 689999999998754432211111 1 256789999864
No 391
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=64.72 E-value=16 Score=43.07 Aligned_cols=108 Identities=19% Similarity=0.058 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCC-------
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT------- 425 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~------- 425 (741)
+++++.+++.|++. ++..+++|... ..+....+.+|++.+|.+.+.+...- + .+....|..+..+.
T Consensus 200 ~~~i~~~~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~ 277 (578)
T PRK06112 200 PQRLAEAASLLAQA--QRPVVVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRH 277 (578)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECCCccccchHHHHHHHHHHhCCCEEEcccccccCCCCCccccccccccCCCccchHH
Confidence 56788888888875 56667776442 22334568899999998877543321 1 11111121111111
Q ss_pred CccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 426 SISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 426 ~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
...-++++|+||.+|+.+....... + .. . ..+.++|.||+..
T Consensus 278 ~~~~l~~aDlvl~lG~~~~~~~~~~--~-~~-~-~~~~~~i~id~d~ 319 (578)
T PRK06112 278 LRDLVREADVVLLVGTRTNQNGTDS--W-SL-Y-PEQAQYIHIDVDG 319 (578)
T ss_pred HHHHHHhCCEEEEECCCCCcccccc--c-cc-c-CCCCeEEEEECCh
Confidence 1134579999999998754432211 1 11 1 2457899999754
No 392
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=64.40 E-value=20 Score=41.93 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCC--Ccccccc
Q 004627 359 DALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNT--SISGLEK 432 (741)
Q Consensus 359 eAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~--~~~di~~ 432 (741)
.+++.+++.|++. ++..+++|+..- ...-.+.+|++.+|.+.+.+...-.. +...+|.....+. ...-+++
T Consensus 183 ~~i~~~~~~L~~A--krPvii~G~g~~-~a~~~l~~lAe~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~ 259 (549)
T PRK06457 183 IDFSRAKELIKES--EKPVLLIGGGTR-GLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAMDK 259 (549)
T ss_pred HHHHHHHHHHHcC--CCcEEEECcchh-hHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHh
Confidence 4677788888765 567777776442 22345789999999987654332111 1111222111111 1244679
Q ss_pred CCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 433 ADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 433 ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+|+||.+|+...... + ...+.+++.||...
T Consensus 260 aDlvl~lG~~~~~~~-----~-----~~~~~~ii~id~d~ 289 (549)
T PRK06457 260 ADLLIMLGTSFPYVN-----F-----LNKSAKVIQVDIDN 289 (549)
T ss_pred CCEEEEECCCCChhh-----c-----CCCCCcEEEEeCCH
Confidence 999999998642211 1 12367899998754
No 393
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=64.11 E-value=3.2 Score=28.13 Aligned_cols=18 Identities=39% Similarity=0.933 Sum_probs=12.9
Q ss_pred ccccccccccCcccccccccccccccce
Q 004627 256 LSGNVIDICPVGALTSKPFAFKARNWEL 283 (741)
Q Consensus 256 ~cg~cv~vCP~gAl~~~~~~~~~r~wel 283 (741)
.||.| +||.+.+ +||||+
T Consensus 18 ~~G~C--L~~~~~~--------A~PWEm 35 (35)
T PF08115_consen 18 CCGSC--LCSNGPH--------ARPWEM 35 (35)
T ss_pred cccce--eccCCcc--------CCcccC
Confidence 46777 4777665 699986
No 394
>PLN02573 pyruvate decarboxylase
Probab=63.62 E-value=13 Score=43.72 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcC-cccCCC--cc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSG-YIMNTS--IS 428 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~-~~~~~~--~~ 428 (741)
.+++++.+++.|++. ++..++.|... .....-.+.+|++.+|.+.+.+...-. .+...+|.. +..+.. ..
T Consensus 210 ~~~~~~~a~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~ 287 (578)
T PLN02573 210 LEAAVEAAAEFLNKA--VKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAE 287 (578)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEChhhcccchHHHHHHHHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHH
Confidence 467899999999987 45666776433 122344678999999988765433211 111122221 111211 23
Q ss_pred ccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 429 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 429 di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
-+++||+||.+|+....-...-+.. ...+.++|.||....
T Consensus 288 ~~~~aDlvl~lG~~l~~~~~~~~~~-----~~~~~~~I~id~d~~ 327 (578)
T PLN02573 288 IVESADAYLFAGPIFNDYSSVGYSL-----LLKKEKAIIVQPDRV 327 (578)
T ss_pred HHHhCCEEEEECCccCCcccccccc-----cCCCCcEEEEeCCEE
Confidence 4689999999997543222111111 124578999987543
No 395
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.55 E-value=20 Score=42.08 Aligned_cols=108 Identities=18% Similarity=0.056 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~--~~~di 430 (741)
+++++.+++.|.+. ++..+++|.... ......+.+|++.+|.+.+.+...-. .+...+|..+..+. ...-+
T Consensus 193 ~~~i~~~~~~l~~A--~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l 270 (574)
T PRK06882 193 KGQIKKALKALLVA--KKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAM 270 (574)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccccHHHHHHH
Confidence 56788888888875 566777775432 12334678999999998765533211 11112222111111 12346
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++|+||++|+.......... .. . ....++|.||...
T Consensus 271 ~~aDlvl~lG~~~~~~~~~~~---~~-~-~~~~~~I~id~d~ 307 (574)
T PRK06882 271 HESDLILGIGVRFDDRTTNNL---AK-Y-CPNAKVIHIDIDP 307 (574)
T ss_pred HhCCEEEEECCCCCccccCch---hh-c-CCCCeEEEEECCH
Confidence 799999999987533221111 11 1 2456899998753
No 396
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=62.90 E-value=3 Score=45.23 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=16.5
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
.+...-|++||||+++||.
T Consensus 297 ~fG~~~CvgCGrC~~~CP~ 315 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPE 315 (334)
T ss_pred ccCccccCCcCchhhhCCC
Confidence 3567889999999999996
No 397
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=62.51 E-value=28 Score=40.88 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCc-ccC--CCcccccc
Q 004627 360 ALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGY-IMN--TSISGLEK 432 (741)
Q Consensus 360 Al~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~-~~~--~~~~di~~ 432 (741)
+++.+++.|++ ++..++.|...... ...+.+|++++|.+.+.+...- + .+...+|... ..+ .....+++
T Consensus 211 ~~~~~~~~l~~---krPvii~G~g~~~~-~~~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~ 286 (568)
T PRK07449 211 TSQRDWDIWRQ---KRGVVIAGRLSAEE-GQAIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQ 286 (568)
T ss_pred cchhhhhhhcc---CCeEEEECCCChHH-HHHHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCC
Confidence 45556666665 45777777654322 2568899999998765433221 1 0111111110 001 12245689
Q ss_pred CCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 433 ADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 433 ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+|+||.+|+....... ..+.. ....+++.||....
T Consensus 287 aD~vl~vG~~l~~~~~--~~~~~----~~~~~~i~id~d~~ 321 (568)
T PRK07449 287 PDIVIQFGSPPTSKRL--LQWLA----DCEPEYWVVDPGPG 321 (568)
T ss_pred CCEEEEeCCCCCchhH--HHHHh----cCCCCEEEECCCCC
Confidence 9999999987643321 11111 12348999997543
No 398
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=61.72 E-value=13 Score=37.47 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=31.0
Q ss_pred cccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCC
Q 004627 428 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 475 (741)
Q Consensus 428 ~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t 475 (741)
..+++||++|++|+-.... |. +..++.+ +++|++|++|++..+..
T Consensus 151 ~~~~~aDlllviGTSl~V~-pa-~~l~~~~-~~~g~~vi~iN~~~~~~ 195 (206)
T cd01410 151 AAACRADLFLCLGTSLQVT-PA-ANLPLKA-ARAGGRLVIVNLQPTPK 195 (206)
T ss_pred HHHhcCCEEEEECcCceeh-hH-HHHHHHH-HhcCCeEEEECCCCCCC
Confidence 4557899999999976443 32 2233344 35899999999876544
No 399
>PRK06154 hypothetical protein; Provisional
Probab=60.85 E-value=21 Score=41.85 Aligned_cols=106 Identities=16% Similarity=0.059 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcc----hhhhhhhcCcccCC-C-cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGA----QSNADLRSGYIMNT-S-ISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~----~~~~~~~~~~~~~~-~-~~di 430 (741)
.+.++.+++.|.+. ++..++.|.... .+....+.+|++.+|.+.+.+...-. .+....|.....+. . ..-+
T Consensus 201 ~~~i~~aa~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~ 278 (565)
T PRK06154 201 PVEVVEAAALLLAA--ERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFL 278 (565)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCCccccCCCCCCCcHHHHHHH
Confidence 57799999999876 566677775432 23345678999999998775533211 11111222111111 1 1236
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++||+||++|+.+.... .. . .. ..+.++|.||...
T Consensus 279 ~~aDlvL~lG~~l~~~~--~~-~---~~-~~~~~vI~id~d~ 313 (565)
T PRK06154 279 READVLFGIGCSLTRSY--YG-L---PM-PEGKTIIHSTLDD 313 (565)
T ss_pred HhCCEEEEECCCCcccc--cC-c---cC-CCCCeEEEEECCH
Confidence 89999999998864321 00 0 11 2467899988654
No 400
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=60.75 E-value=16 Score=43.06 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCC--Ccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGL 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di 430 (741)
.++++.+++.|++. ++..+++|... ..+....+.+|++.+|.+.+.+...- + .+...+|.....+. ...-+
T Consensus 183 ~~~i~~~~~~L~~A--~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l 260 (579)
T TIGR03457 183 ATSLAQAARLLAEA--KFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLI 260 (579)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHH
Confidence 56788999999876 56777777543 22334458899999998876543221 1 11112222111121 12346
Q ss_pred ccCCEEEEEcCChhhh--hhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 431 EKADCFLLVGTQPRVE--AAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~--~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++|+||++|+..... .+.... .. ..++.++|.||...
T Consensus 261 ~~aDlil~lG~~~~~~~~~~~~~~---~~-~~~~~~~I~id~d~ 300 (579)
T TIGR03457 261 SDADVVLALGTRLGPFGTLPQYGI---DY-WPKNAKIIQVDANA 300 (579)
T ss_pred HhCCEEEEECCCCccccccccccc---cc-CCCCCeEEEEeCCH
Confidence 8999999999865321 110000 01 12467999999654
No 401
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=60.46 E-value=47 Score=32.52 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCC
Q 004627 496 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 538 (741)
Q Consensus 496 ~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~ 538 (741)
..+++.+.++++|+|++|.+.... ......+..|+..+|.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~---~ea~e~l~elaEkl~i 64 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDD---EELLDRAVKIAKKANI 64 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCcccc---chHHHHHHHHHHHHCC
Confidence 356777899999999999998651 2344556666666543
No 402
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=60.36 E-value=4 Score=45.18 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=40.3
Q ss_pred ccccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 205 PLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 205 p~i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
|.-.+.+..||+||-||+.||- .++.+.+ ..+..++...|.+|+||...||-.+..
T Consensus 43 ~~~~ise~lCigcgicvkkcpf----~ai~iin------lp~nl~~etthry~~n~fKlhrlp~pr 98 (592)
T KOG0063|consen 43 PTAFISEELCIGCGICVKKCPF----EAIQIIN------LPTNLEKETTHRYSANSFKLHRLPIPR 98 (592)
T ss_pred CcchhhHhhhccccceeeccCc----ceEEecC------CchhHhhhhhhhhcccceeeccCCCCC
Confidence 4466778899999999999985 4444322 223334445689999999999988753
No 403
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.93 E-value=38 Score=39.08 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=38.3
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCccccccceeccCCCCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSE 621 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 621 (741)
.+.+.++++|.||.. .++.++..-+|++|+..++|+..||..||...-.+
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGtD 213 (512)
T cd02753 155 EEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQLRPGTD 213 (512)
T ss_pred HhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeCCCCCcH
Confidence 467899999999942 12333445689999999999999999999766443
No 404
>PRK07524 hypothetical protein; Provisional
Probab=59.74 E-value=16 Score=42.54 Aligned_cols=109 Identities=18% Similarity=0.060 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCCCccccccC
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTSISGLEKA 433 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~~~~di~~a 433 (741)
.+.++.+++.|++. ++..++.|...- ...-.+.+|++.+|.+.+.+...-.. +...+|..+.......-+++|
T Consensus 188 ~~~i~~~~~~L~~A--krPvil~G~g~~-~a~~~l~~lae~l~~pV~tt~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~a 264 (535)
T PRK07524 188 PAALAQAAERLAAA--RRPLILAGGGAL-AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAEA 264 (535)
T ss_pred HHHHHHHHHHHHhC--CCcEEEECCChH-HHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCHHHHHHHHhC
Confidence 56788888888876 567777776542 33456789999999887655332111 111122111000011235799
Q ss_pred CEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 434 DCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 434 d~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
|+||++|+......... .... .. ..+.+++.||...
T Consensus 265 Dlvl~vG~~~~~~~~~~-~~~~-~~-~~~~~~i~id~d~ 300 (535)
T PRK07524 265 DVVLAVGTELGETDYDV-YFDG-GF-PLPGELIRIDIDP 300 (535)
T ss_pred CEEEEeCCCcCcccccc-cccc-cc-CCCCCEEEEECCH
Confidence 99999998743221100 0000 11 2457899999754
No 405
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=59.33 E-value=19 Score=37.43 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=31.5
Q ss_pred cccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcc
Q 004627 428 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYD 477 (741)
Q Consensus 428 ~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~ 477 (741)
.++++||++|++|+..... |. ....+.+ +++|++|++|++..+..-.
T Consensus 174 ~~~~~aDl~lviGTSl~V~-pa-~~l~~~~-~~~g~~~i~iN~~~t~~d~ 220 (244)
T PRK14138 174 RLSSKASLMIVMGSSLVVY-PA-AELPLIT-VRSGGKLVIVNLGETPLDD 220 (244)
T ss_pred HHHhcCCEEEEeCcCCeee-cH-hHHHHHH-HHcCCeEEEEcCCCCCCCc
Confidence 4567899999999976543 32 2222233 3489999999997655433
No 406
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=59.22 E-value=5.7 Score=43.84 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=16.7
Q ss_pred ccccccccc--ccccCccccc
Q 004627 253 TSELSGNVI--DICPVGALTS 271 (741)
Q Consensus 253 ~c~~cg~cv--~vCP~gAl~~ 271 (741)
.|..|+.|+ ++||++||..
T Consensus 303 kCi~Cg~C~~~~aCPt~AI~~ 323 (391)
T TIGR03287 303 RCENCDPCLVEEACPVPAIKK 323 (391)
T ss_pred hCcCCCCCcCCcCCCHhhEec
Confidence 499999995 9999999973
No 407
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=58.80 E-value=21 Score=39.11 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=37.8
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCccccccceeccCCCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 620 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~ 620 (741)
...+.++++|.||.. .++.++...+|++|+..++|+..||..+|.....
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~i~pgt 212 (374)
T cd00368 155 ENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLPIRPGT 212 (374)
T ss_pred hhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeCCCCCc
Confidence 467899999999942 2233345568999999999999999999977443
No 408
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=58.77 E-value=5.5 Score=48.54 Aligned_cols=16 Identities=19% Similarity=0.594 Sum_probs=14.5
Q ss_pred CCcccccchhHHHhhh
Q 004627 211 MTRCIQCTRCVRFATE 226 (741)
Q Consensus 211 ~~rCI~C~rCvr~C~~ 226 (741)
..-|+.||.|+.+||.
T Consensus 203 ~~~C~~CG~Cv~VCPv 218 (819)
T PRK08493 203 TLDCSFCGECIAVCPV 218 (819)
T ss_pred cccccccCcHHHhCCC
Confidence 5689999999999986
No 409
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=58.19 E-value=5.2 Score=31.56 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=11.2
Q ss_pred ccCCcccccchhHHHhhh
Q 004627 209 TVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 209 ~d~~rCI~C~rCvr~C~~ 226 (741)
.....|+.||+|..+||.
T Consensus 41 ~~~~~C~~Cg~C~~~CP~ 58 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQ 58 (61)
T ss_dssp TTTTT--S--HHHHH-TT
T ss_pred cccccCcCcCcCcccccC
Confidence 467899999999999996
No 410
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=57.83 E-value=3 Score=39.53 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.3
Q ss_pred cccccccccccccCcc
Q 004627 253 TSELSGNVIDICPVGA 268 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gA 268 (741)
.|..||.|..+||+..
T Consensus 3 ~Ci~CG~C~~~CP~~~ 18 (144)
T TIGR03290 3 ACYQCGTCTGSCPSGR 18 (144)
T ss_pred cccCCCCCcCcCCCcc
Confidence 4999999999999864
No 411
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=57.60 E-value=6.8 Score=33.69 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=22.4
Q ss_pred cccccccccccccCcccccccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKA 278 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~ 278 (741)
.|..|++|.-.||-+||..+...+..
T Consensus 36 kCi~C~~C~~yCPe~~i~~~~~~~~~ 61 (91)
T COG1144 36 KCINCKLCWLYCPEPAILEEEGGYKV 61 (91)
T ss_pred ccccCceeEEECCchheeeccCCccc
Confidence 49999999999999999988865543
No 412
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=57.39 E-value=4.2 Score=46.06 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.3
Q ss_pred ccccccccccccccCcccc
Q 004627 252 MTSELSGNVIDICPVGALT 270 (741)
Q Consensus 252 ~~c~~cg~cv~vCP~gAl~ 270 (741)
..|..||.|.++||.+.+.
T Consensus 363 ~~Ci~Cg~C~~vCP~~l~p 381 (435)
T TIGR01945 363 KPCIRCGKCVQVCPMNLLP 381 (435)
T ss_pred CcCcCccchhhhCccchhh
Confidence 3599999999999999653
No 413
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=57.00 E-value=3.9 Score=43.02 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.3
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..|+.|+++||.+++...+
T Consensus 170 ~C~~C~~C~~~CP~~vi~~~~ 190 (263)
T PRK00783 170 DCDECEKCVEACPRGVLELKE 190 (263)
T ss_pred cCCchHHHHHhCCccccEecC
Confidence 499999999999999997644
No 414
>PRK08266 hypothetical protein; Provisional
Probab=57.00 E-value=19 Score=41.98 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCC--CccccccCCE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNT--SISGLEKADC 435 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~--~~~di~~ad~ 435 (741)
.+.++.+++.|.+. ++..+++|.... .....+.+|++++|.+.+.+...-.....+. ....|. ...-++++|+
T Consensus 192 ~~~i~~~~~~L~~A--krPvIv~G~g~~-~a~~~l~~lae~~g~pv~tt~~~kg~~~~~h--p~~~g~~~~~~~~~~aDl 266 (542)
T PRK08266 192 PDAIAAAAALIAAA--KNPMIFVGGGAA-GAGEEIRELAEMLQAPVVAFRSGRGIVSDRH--PLGLNFAAAYELWPQTDV 266 (542)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCChh-hHHHHHHHHHHHHCCCEEEeccccccCCCCC--ccccCCHHHHHHHHhCCE
Confidence 35677777888765 466777776542 3345678899999998765432210111000 001111 1234689999
Q ss_pred EEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 436 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 436 Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
||.+|+.+... .. .+ . ....+.+++.||..
T Consensus 267 vl~lG~~~~~~--~~-~~-~--~~~~~~~~i~id~d 296 (542)
T PRK08266 267 VIGIGSRLELP--TF-RW-P--WRPDGLKVIRIDID 296 (542)
T ss_pred EEEeCCCcCcc--cc-cc-c--ccCCCCcEEEEECC
Confidence 99999875432 11 11 0 01245789998764
No 415
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=56.90 E-value=3.8 Score=50.92 Aligned_cols=61 Identities=11% Similarity=-0.010 Sum_probs=35.8
Q ss_pred ccccc----cccccccccCccccccc-ccccc----cccceeeeeecCCCCCCCCCceEeeeCCEEEEEcCC
Q 004627 252 MTSEL----SGNVIDICPVGALTSKP-FAFKA----RNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPR 314 (741)
Q Consensus 252 ~~c~~----cg~cv~vCP~gAl~~~~-~~~~~----r~wel~~~~siC~~C~~gC~i~v~vrdg~V~rI~p~ 314 (741)
..|.. ||.|+++||.+|+.... ..+.. -.++ ....-|.+|..-|....-...|++.-+.-+
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d--~~C~~CG~C~~vCP~~a~~~~gk~~~~~kd 950 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLD--GMCNECGNCATFCPYDGAPYKDKLTLFWLE 950 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhhhccccccccCCceeeecC--ccccccchHHHhCCCCcccceeeeeeecch
Confidence 35774 99999999999963221 01110 0122 134556667788877666666775445443
No 416
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=56.81 E-value=21 Score=42.18 Aligned_cols=112 Identities=16% Similarity=0.062 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCC---cc-hhhhhhhcCcccCC--Cccc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGT---GA-QSNADLRSGYIMNT--SISG 429 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~---~~-~~~~~~~~~~~~~~--~~~d 429 (741)
.+++++.+++.|.+. ++..+++|... ..+....+.+|++.+|.+.+.+... ++ .+...+|.....+. ...-
T Consensus 186 ~~~~i~~a~~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~ 263 (588)
T PRK07525 186 GEQSLAEAAELLSEA--KFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMEL 263 (588)
T ss_pred CHHHHHHHHHHHHhC--CCCEEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHH
Confidence 367899999999876 56677777543 2233456788999999887754322 11 11111221111111 1133
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++||+||++|+............. .. ..++.++|.||...
T Consensus 264 ~~~aDlvl~lG~~l~~~~~~~~~~~-~~-~~~~~~iI~Id~d~ 304 (588)
T PRK07525 264 IAKADVVLALGTRLNPFGTLPQYGI-DY-WPKDAKIIQVDINP 304 (588)
T ss_pred HHhCCEEEEECCCCchhhccccccc-cc-CCCCCeEEEEECCH
Confidence 6899999999987533111000000 00 12468999999754
No 417
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=56.81 E-value=25 Score=41.32 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCc---c-hhhhhhhcCcccCC--Cccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTG---A-QSNADLRSGYIMNT--SISGLE 431 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~di~ 431 (741)
+++++.+++.|++. ++..++.|+... .....+.+|++.+|.+.+.+...- + .+...+|..+..+. ...-++
T Consensus 188 ~~~i~~~~~~L~~A--krPvii~G~g~~-~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~ 264 (574)
T PRK09124 188 EEELRKLAALLNGS--SNITLLCGSGCA-GAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMM 264 (574)
T ss_pred HHHHHHHHHHHHcC--CCCEEEECcChH-hHHHHHHHHHHHhCCceEEcccccccCCCCCcccccCCccCCCHHHHHHHH
Confidence 57788899999876 567777776542 334567899999998876543321 1 11112222111111 123468
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
+||+||.+|+..... .. .....++|.||....
T Consensus 265 ~aDlvl~lG~~~~~~---------~~-~~~~~~ii~id~d~~ 296 (574)
T PRK09124 265 NCDTLLMLGTDFPYR---------QF-YPTDAKIIQIDINPG 296 (574)
T ss_pred hCCEEEEECCCCCcc---------cc-cCCCCcEEEeeCCHH
Confidence 999999999864211 11 123468999997543
No 418
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=56.77 E-value=10 Score=35.31 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCC
Q 004627 495 RHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 538 (741)
Q Consensus 495 i~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~ 538 (741)
|+++++.|.++++|+|++|.+..+..-.. .+..|+..+|.
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~----~l~~lae~~~~ 40 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAE----ELRELAEKLGI 40 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHH----HHHHHHHHHTS
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHH----HHHHHHHHHCC
Confidence 56889999999999999999987654443 45566666654
No 419
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=56.77 E-value=3.1 Score=41.08 Aligned_cols=51 Identities=16% Similarity=0.025 Sum_probs=33.5
Q ss_pred cccccccccccccCcccccccccc---c----cccc----ceeeeeecCCCCCCCCCceEee
Q 004627 253 TSELSGNVIDICPVGALTSKPFAF---K----ARNW----ELKGTETIDVTDAVGSNIRIDS 303 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~---~----~r~w----el~~~~siC~~C~~gC~i~v~v 303 (741)
.|..||.|...||++-.++=+.+- . -+.| +.-|.-++|..|.-.|.-.|.+
T Consensus 40 ~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v~i 101 (195)
T COG1150 40 GCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGVKI 101 (195)
T ss_pred HhhccCcccCCCCCcccCCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCCCH
Confidence 499999999999999884332110 0 1112 2336778888898888655443
No 420
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=56.76 E-value=14 Score=43.00 Aligned_cols=108 Identities=14% Similarity=-0.010 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhc-CcccCCC--ccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRS-GYIMNTS--ISG 429 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~-~~~~~~~--~~d 429 (741)
+++++.+++.|++. ++..++.|.... ....-.+.+|++++|.+.+.+...-.. +...+|. .+..+.. ..-
T Consensus 188 ~~~v~~~~~~l~~A--krPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~ 265 (535)
T TIGR03394 188 DACADEVLARMRSA--TSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRL 265 (535)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEChhhcccCcHHHHHHHHHHhCCCEEEccccCcCCCCCCccccccccCCCCCHHHHHH
Confidence 57788899999886 566677775432 122345789999999987755443211 1112221 1111111 234
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
+++||+||.+|+.+.......... . ..+.++|.||...
T Consensus 266 l~~aDliL~iG~~l~~~~~~~~~~----~-~~~~~~I~id~~~ 303 (535)
T TIGR03394 266 VEESDGLLLLGVILSDTNFAVSQR----K-IDLRRTIHAFDRA 303 (535)
T ss_pred HHhCCEEEEECCcccccccccccc----c-CCCCcEEEEeCCE
Confidence 689999999998754332111100 1 1346899998643
No 421
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=56.57 E-value=4.7 Score=31.24 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=8.2
Q ss_pred CcccccchhHHHhhh
Q 004627 212 TRCIQCTRCVRFATE 226 (741)
Q Consensus 212 ~rCI~C~rCvr~C~~ 226 (741)
+.|+.|++|+.+||.
T Consensus 41 ~~C~~C~~C~~~CP~ 55 (57)
T PF13183_consen 41 WSCTTCGACSEVCPV 55 (57)
T ss_dssp GG-----HHHHH-TT
T ss_pred cCCcCcCCccCcCcc
Confidence 889999999999995
No 422
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=56.23 E-value=12 Score=40.71 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=27.3
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCcc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIP 99 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~ip 99 (741)
+++.+||++|+++.|.||=+|+...|...+
T Consensus 2 m~V~VnGeev~lp~gsTlrdalea~ga~y~ 31 (512)
T COG4070 2 MSVEVNGEEVTLPAGSTLRDALEASGASYI 31 (512)
T ss_pred eEEEECCeEecCCCcchHHHHHHhcCCccc
Confidence 678999999999999999999999998743
No 423
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.09 E-value=5.2 Score=46.94 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=18.1
Q ss_pred ccccCCcccccchhHHHhhh
Q 004627 207 VKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~ 226 (741)
+.+|.++|++|+.|+++||.
T Consensus 536 ~~i~~~~C~~Cg~C~~~CP~ 555 (564)
T PRK12771 536 YHFDYDKCTGCHICADVCPC 555 (564)
T ss_pred EEEecccCcChhHHHhhcCc
Confidence 55788999999999999986
No 424
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=55.01 E-value=2.7 Score=33.91 Aligned_cols=53 Identities=34% Similarity=0.470 Sum_probs=31.3
Q ss_pred ccccCCcccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcccc
Q 004627 207 VKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
|.++...|+|-|-||+=-|.+ +. .+|.. -|.+.- .+-+.--..++-||.|||+
T Consensus 18 i~fn~~iC~Hs~nCV~Gn~~v-----F~-~~rkP--WI~Pd~---~~ve~i~~vi~sCPSGAl~ 70 (74)
T COG3592 18 IYFNTAICAHSGNCVRGNPKV-----FN-LGRKP--WIMPDA---VDVEEIVKVIDTCPSGALK 70 (74)
T ss_pred EEeccceeecccceecCCHhh-----cc-cCCCC--ccCCCC---CCHHHHHHHHHhCCchhhh
Confidence 457889999999999855531 11 12221 111111 1122334688999999996
No 425
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=54.98 E-value=4.2 Score=44.91 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.2
Q ss_pred CCccccccccccccccCccc
Q 004627 250 KLMTSELSGNVIDICPVGAL 269 (741)
Q Consensus 250 ~~~~c~~cg~cv~vCP~gAl 269 (741)
..+.|+-||.|..+||+=..
T Consensus 306 e~L~CIRCGaC~n~CPvY~~ 325 (459)
T COG1139 306 EALRCIRCGACLNHCPVYRH 325 (459)
T ss_pred HHHHhhcchHhhhcChhhhh
Confidence 34579999999999998443
No 426
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=54.90 E-value=5.2 Score=44.59 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=24.5
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEc
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIG 469 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivId 469 (741)
+..+++++.|+-.....|.+...+.+...+.|..+ ++.
T Consensus 160 ~~~~v~~f~gC~~~~~~p~~~~a~~~lL~~~G~~v-~~~ 197 (396)
T PRK11168 160 YKKQVAYFHGCYVNYNHPQLGKDLVKVLNAMGYEV-LLP 197 (396)
T ss_pred CCCeEEEECccccccCCcHHHHHHHHHHHHCCCEE-EcC
Confidence 45688999998766666655544444444578888 443
No 427
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=54.18 E-value=4.1 Score=42.44 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=15.9
Q ss_pred ccccccccccccccCccc
Q 004627 252 MTSELSGNVIDICPVGAL 269 (741)
Q Consensus 252 ~~c~~cg~cv~vCP~gAl 269 (741)
..|+.||.|..+||+...
T Consensus 152 ~~CI~CG~C~saCP~~~~ 169 (249)
T PRK08640 152 SKCMTCGCCLEACPNVNE 169 (249)
T ss_pred hhccCcCcccccCCCCcc
Confidence 459999999999998875
No 428
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=53.20 E-value=5 Score=45.20 Aligned_cols=19 Identities=16% Similarity=0.649 Sum_probs=16.8
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
.++.++|++|+.|+.+||.
T Consensus 373 ~i~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 373 EVIEEECVGCNLCAHVCPV 391 (420)
T ss_pred EechhhCcccchHHhhCCC
Confidence 4578999999999999985
No 429
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=53.09 E-value=4.3 Score=44.20 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=15.2
Q ss_pred cCCcccccchhHHHhhh
Q 004627 210 VMTRCIQCTRCVRFATE 226 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~ 226 (741)
....|++||||+++||.
T Consensus 305 g~~~CvgCGrC~~~CP~ 321 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPE 321 (344)
T ss_pred chhhCcCcCccccccCC
Confidence 45789999999999996
No 430
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=52.67 E-value=33 Score=35.61 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=28.9
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 474 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~ 474 (741)
++++|++|++|+-.... |. ......+ +++|++|+.|++..+.
T Consensus 170 ~~~~DlllviGTSl~V~-pa-~~l~~~a-~~~g~~vi~IN~~~~~ 211 (242)
T PTZ00408 170 MSKTDLFVAVGTSGNVY-PA-AGFVGRA-QFYGATTLELNLEEGT 211 (242)
T ss_pred HHhCCEEEEEccCCccc-cH-HHHHHHH-HHcCCeEEEECCCCCC
Confidence 46799999999976444 32 2222334 4589999999987644
No 431
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=52.64 E-value=2 Score=43.89 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=35.4
Q ss_pred HHHHhhCCCCCCCcCC-CCCChhhhHHhHhCCC-----CCccccccccc-ccccCc-ccccccCCcccccchhHHHhhh
Q 004627 156 EFLLMNHPLDCPICDQ-GGECDLQDQSMAFGSD-----RGRFTEMKRSV-VDKNLG-PLVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 156 e~~l~~hp~dC~~C~~-~gec~lq~~~~~~g~~-----~~~~~~~~~~~-~~~~~~-p~i~~d~~rCI~C~rCvr~C~~ 226 (741)
++...+....|.-|.. ...|+.......|.-. ..|+....+.- ...... .........|+.||.|+.+||.
T Consensus 130 ~~~~~~~~~~Ci~CG~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~ 208 (220)
T TIGR00384 130 QREKLDQLSGCILCGCCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPK 208 (220)
T ss_pred HHHHHhhhhhccccccccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCC
Confidence 4555566678888876 6778865322222100 01111111100 000000 0112345789999999999996
No 432
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.83 E-value=91 Score=35.68 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=37.9
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 481 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l 481 (741)
.-+.++++|.||..+.|-.. +++++.+ +---+|++|+..+.|+.++|+
T Consensus 329 ~ik~l~v~g~Np~~~~p~~~-~~~~al~-~~~~vV~~d~~~teTa~~ADv 376 (477)
T cd02759 329 PVKMLIVFGTNPLASYADTA-PVLEALK-ALDFIVVVDLFMTPTAMLADI 376 (477)
T ss_pred CcEEEEEeCCCccccCCCHH-HHHHHHh-cCCeEEEEecCcCchHhhCCE
Confidence 45899999999999998765 4777764 333678999999999888774
No 433
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=51.62 E-value=9.4 Score=39.59 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=28.6
Q ss_pred HHHHHHHCCCCccccccCCC--CCCccccCccEEEEcCCCccccccc
Q 004627 87 VLQACEVAGVDIPRFCYHSR--LSIAGNCRMCLVEVEKSPKPVASCA 131 (741)
Q Consensus 87 vl~a~~~~g~~ip~~C~~~~--l~~~G~C~~C~V~v~~~~~~~~aC~ 131 (741)
+.+++.+.|+ |..+..++ .++.|.|+.|.|++++.+ +++|.
T Consensus 196 v~~~l~~~Gv--~~~~~~e~~m~cg~G~C~~C~~~~~~~~--~~~C~ 238 (250)
T PRK00054 196 VVEILKEKKV--PAYVSLERRMKCGIGACGACVCDTETGG--KRVCK 238 (250)
T ss_pred HHHHHHHcCC--cEEEEEcccccCcCcccCcCCcccCCCC--EEEeC
Confidence 5677777887 33333333 247899999999999943 47885
No 434
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.47 E-value=90 Score=35.48 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=38.2
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 481 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l 481 (741)
+-+.++++|.||..+.|-. .+++++.+ +---+|++|+..+.|+.++|+
T Consensus 330 ~ik~l~~~~~Np~~~~p~~-~~~~~al~-~l~f~V~~d~~~teTa~~ADi 377 (454)
T cd02755 330 PIKALFIYRTNPFHSMPDR-ARLIKALK-NLDLVVAIDILPSDTALYADV 377 (454)
T ss_pred CceEEEEcCCCcccccCCH-HHHHHHHh-cCCeEEEEeCCcCchHhhCCE
Confidence 4689999999999999875 55677764 333589999999999888774
No 435
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=51.31 E-value=26 Score=40.83 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCC-CHHHHHHHHHHHHHcCCCcccCCCCcchh----hhhhhcCcccCC---Ccc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLS-DAESMMALKDFLNRMGSNNVWCEGTGAQS----NADLRSGYIMNT---SIS 428 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~-~~e~~~~~~~l~~~lGs~~~~~~~~~~~~----~~~~~~~~~~~~---~~~ 428 (741)
.+++++.+++.|++. ++..++.|... .......+.+|++++|.+.+.+...-... ...+|.....+. ...
T Consensus 191 ~~~~i~~a~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~ 268 (539)
T TIGR03393 191 LRAFRDAAENKLAMA--KRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKE 268 (539)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEeChhhcccChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHH
Confidence 456689999999886 45666666433 11233467899999998876554432111 111221111111 123
Q ss_pred ccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 429 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 429 di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
-+++||+||++|+.........+... . ...++|.||+..
T Consensus 269 ~~~~aDlvl~lG~~l~~~~~~~~~~~---~--~~~~~I~id~~~ 307 (539)
T TIGR03393 269 AIEGADAVICVGVRFTDTITAGFTHQ---L--TPEQTIDVQPHA 307 (539)
T ss_pred HHhhCCEEEEECCcccccccceeecc---C--CcccEEEEcCCe
Confidence 46899999999987433221111110 1 124789898854
No 436
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=50.77 E-value=28 Score=43.78 Aligned_cols=47 Identities=11% Similarity=0.236 Sum_probs=36.9
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCccccccceeccCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASA 618 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~ 618 (741)
...+.++++|.||.. .++.++..-||++|+..+.|+..||+.||...
T Consensus 220 ~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~irP 275 (1009)
T TIGR01553 220 KNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIRS 275 (1009)
T ss_pred HhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCCC
Confidence 467899999999842 12333445688999999999999999999863
No 437
>PRK07064 hypothetical protein; Provisional
Probab=50.56 E-value=27 Score=40.77 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcch----hhhhhhcCcccCCC-c-cccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ----SNADLRSGYIMNTS-I-SGLE 431 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~----~~~~~~~~~~~~~~-~-~di~ 431 (741)
++.++.+++.|.+. ++..++.|.... ...-.+.+|++ +|.+.+.+...-.. +...+|... +.. . .-++
T Consensus 190 ~~~i~~~~~~l~~A--krPvi~~G~g~~-~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~--~~~~~~~~~~ 263 (544)
T PRK07064 190 AAAVAELAERLAAA--RRPLLWLGGGAR-HAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFN--NSAAVEALYK 263 (544)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCChH-hHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCC--CCHHHHHHHH
Confidence 56778888888875 567777776442 22345788999 99987654332111 111122111 111 1 2357
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
++|+||.+|+.+.......+ .. . ...+++.||..
T Consensus 264 ~aDlvl~iG~~~~~~~~~~~-~~----~-~~~~~i~id~d 297 (544)
T PRK07064 264 TCDLLLVVGSRLRGNETLKY-SL----A-LPRPLIRVDAD 297 (544)
T ss_pred hCCEEEEecCCCCccccccc-cc----C-CCCceEEEeCC
Confidence 89999999997543321111 11 1 23578888764
No 438
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=50.31 E-value=23 Score=36.23 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=30.3
Q ss_pred cccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCC
Q 004627 428 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 474 (741)
Q Consensus 428 ~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~ 474 (741)
.++++||++|++|+..... |. ......+ +++|+++++|++..+.
T Consensus 167 ~~~~~~Dl~lvvGTSl~V~-p~-~~l~~~a-~~~g~~~i~iN~~~~~ 210 (222)
T cd01413 167 EAAKEADLFIVLGSSLVVY-PA-NLLPLIA-KENGAKLVIVNADETP 210 (222)
T ss_pred HHHhcCCEEEEEccCCEec-cH-hHHHHHH-HHcCCeEEEEcCCCCC
Confidence 4567899999999986554 32 2222333 4589999999987543
No 439
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=50.02 E-value=22 Score=43.31 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=33.9
Q ss_pred HHHHHHHCCCCc------cccccCCCCCCccccCccEEEEcCCCcccccccC-CCCCCCEEEc
Q 004627 87 VLQACEVAGVDI------PRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAM-PALPGMKIKT 142 (741)
Q Consensus 87 vl~a~~~~g~~i------p~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~-~v~~gm~v~t 142 (741)
+.+.+.+.|+.+ ..-| +.|.|+.|.|.+.+ .....|.- ||=++-+|.-
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~C------G~G~C~~C~v~~~~--~~~~~C~dGPvF~~~~v~~ 250 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVD------GTGMCGACRVTVGG--KTKFACVDGPEFDGHLVDF 250 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccC------cccccCcceeEeCC--CeEEEECCCCeecccEEeH
Confidence 567777788865 3334 77999999999866 33578865 5666666654
No 440
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=49.42 E-value=2 Score=44.08 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.2
Q ss_pred cccccccccccccCccccccc
Q 004627 253 TSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~ 273 (741)
.|..|+.|+++||++|+....
T Consensus 175 ~C~~C~~C~~aCP~~ai~~~~ 195 (228)
T TIGR03294 175 LCMGCGTCAAACPTRAIEMED 195 (228)
T ss_pred hCcChhHHHHhCCHhhEEEeC
Confidence 499999999999999987643
No 441
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=48.72 E-value=28 Score=33.73 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCC--CCC-C------cceeecCchhhhhhh-hhcCCCC
Q 004627 496 HPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVI--RPD-W------NGLNVLLLNAAQAAA-LDLGLVP 565 (741)
Q Consensus 496 ~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~--~~~-g------~g~~~l~~~~~~~g~-~~~g~~p 565 (741)
.++++.|.++++|+|++|.+..... ....+..|+..+|.- ... + .|+...+ ...|. ...+..|
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~----a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~---~~lg~~g~~~~~p 90 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDE----EKELIVKFIEKFDLPVVATADTYRALIEAGIESEE---MNLHEITQFLADP 90 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCccc----HHHHHHHHHHHHCCCEEEcCccccccccCCeecCC---CCHHHHHHhccCc
Confidence 4567788999999999999986533 344455666665441 111 1 1222111 11111 1122234
Q ss_pred CCCC--CccCceEEEEeccCccC----ccCCCC--CCeEEEEcccCCccccccceeccCCC
Q 004627 566 ESSN--SIESAKFVYLMGADDVD----LEKLPN--DAFVVYQGHHGDHGVYRANVILPASA 618 (741)
Q Consensus 566 ~~~~--~~~~ik~l~l~g~np~~----~~al~k--~~fvV~~d~~~~eta~~ADvVLP~a~ 618 (741)
.... ..++-+.++++|.+... ...|++ .--+|.++-+. -..||+-+|.-+
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~~~~~i~l~~~y---~pnA~~Sf~n~~ 148 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIYYYLSQMLSSLKHFSHIVTIAIDKYY---QPNADYSFPNLS 148 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcchHHHHHHHHHHhhcCcEEEEecCCC---CCCCceeccccC
Confidence 3332 23678899999998732 112221 12246666544 234566555433
No 442
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=48.70 E-value=37 Score=35.16 Aligned_cols=43 Identities=28% Similarity=0.261 Sum_probs=29.5
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 475 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t 475 (741)
++++|++|++|+-... .|.. ..+..+ +++|+++++|++..+..
T Consensus 175 ~~~~dl~lviGTsl~V-~p~~-~l~~~~-~~~~~~~i~iN~~~~~~ 217 (242)
T PRK00481 175 LEEADLFIVIGTSLVV-YPAA-GLPYEA-REHGAKTVEINLEPTPL 217 (242)
T ss_pred HhcCCEEEEECCCceE-cCHh-HHHHHH-HHCCCeEEEECCCCCCC
Confidence 4578999999987655 4542 233333 34899999999876543
No 443
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=48.20 E-value=21 Score=38.89 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=28.9
Q ss_pred hhhhHHhHhCCC-CC--cccccccccccccCcccccccCCcccccchhHHHhhh
Q 004627 176 DLQDQSMAFGSD-RG--RFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 176 ~lq~~~~~~g~~-~~--~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.|.+.++.|+.. .. +|.... ......|-..-+..-||.||.|...||.
T Consensus 315 ~lyN~~~~~~~~~~~~~~Y~~l~---~~~~~~~~~~g~as~CieCgqCl~~CPq 365 (391)
T COG1453 315 RLYNLAVAFDDVDYAKFRYNMLE---NGGHWFPGPKGKASDCIECGQCLEKCPQ 365 (391)
T ss_pred HHHHHHHhhccchhhHHHHHHHh---ccCccCCCCcccccccchhhhhhhcCCC
Confidence 366777778742 22 232111 1111234444567889999999999997
No 444
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=48.16 E-value=87 Score=38.82 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEC-CCCCHHHHHHHHHHHHHcCCCccc-----CCCCcchhhh-hhhcCcccCCCccc
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAG-RLSDAESMMALKDFLNRMGSNNVW-----CEGTGAQSNA-DLRSGYIMNTSISG 429 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g-~~~~~e~~~~~~~l~~~lGs~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~d 429 (741)
|.+.+..+|+.|.+.++ .+++.| +.........+..++..+|..... ........+. +++... ...-+..
T Consensus 479 ~~~~i~~~A~~la~a~~--~~I~~G~g~~~~~~~~~~~~l~~~l~~~g~~gG~~~l~~~~n~~G~~~~g~~~-~~~l~~~ 555 (847)
T PRK08166 479 LQAKADVIAQALAGAKK--PLIISGTSAGSPAIIEAAANVAKALKGRGADVGITLVAPEANSMGLALLGGGS-LEEALEE 555 (847)
T ss_pred hhHHHHHHHHHHhcCCC--cEEEEeCcccChHHHHHHHHHHHHHhccCCCceEEEeccchhHHHHHHhcCCC-HHHHHHH
Confidence 56678888888887643 333444 332333334445555666431100 0000001111 111100 0001122
Q ss_pred c--ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc
Q 004627 430 L--EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 481 (741)
Q Consensus 430 i--~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l 481 (741)
+ .+-+.++++|.||.... -..+++++.. +---+|++|+..+.|+.++|+
T Consensus 556 i~~g~ikal~v~g~np~~~~--~~~~~~~aL~-~~dflVv~d~f~teTA~~ADv 606 (847)
T PRK08166 556 LESGRADAVIVLENDLYRHA--PAARVDAALA-KAPLVIVLDHQRTATMEKAHL 606 (847)
T ss_pred HHcCCCCEEEEeCCCcccCc--CHHHHHHHHh-cCCEEEEEccccCCccccCCE
Confidence 2 24678999999986543 2457777754 434689999999999888774
No 445
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.03 E-value=1.6e+02 Score=28.58 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 437 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Il 437 (741)
++.++.+++.|.+. ++|.+++.+.+..-..++..+| ..+|........ . ....+.+-|++|
T Consensus 17 ~~~~~~~~~~l~~a--~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~--------~--------~~~~~~~~Dv~I 77 (179)
T TIGR03127 17 EEELDKLADKIIKA--KRIFVAGAGRSGLVGKAFAMRL-MHLGFNVYVVGE--------T--------TTPSIKKGDLLI 77 (179)
T ss_pred HHHHHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHH-HhCCCeEEEeCC--------c--------ccCCCCCCCEEE
Confidence 45677788888764 4665555454332222333333 345542221111 0 113456678888
Q ss_pred EEcCChhhhhhHHHHHHHHHHHhCCCEEEEEcc
Q 004627 438 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGP 470 (741)
Q Consensus 438 l~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp 470 (741)
++..- .+.+-+..-++.+ +++|++++.|-.
T Consensus 78 ~iS~s--G~t~~~i~~~~~a-k~~g~~ii~IT~ 107 (179)
T TIGR03127 78 AISGS--GETESLVTVAKKA-KEIGATVAAITT 107 (179)
T ss_pred EEeCC--CCcHHHHHHHHHH-HHCCCeEEEEEC
Confidence 88643 2334444445555 459999999954
No 446
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=47.98 E-value=4.6 Score=48.32 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=21.1
Q ss_pred CCCCcEEEEECCEEEEeCCCChHHHHHHHCCC
Q 004627 65 NPEDAIEVFVDGYPLKIPKGFTVLQACEVAGV 96 (741)
Q Consensus 65 ~~~~~v~~~idg~~~~~~~g~tvl~a~~~~g~ 96 (741)
...+.|.|.+.|...- .++.|+++++..++
T Consensus 229 ld~~~vnI~vhGHnp~--l~~~iv~~~~~~~l 258 (784)
T TIGR00314 229 IDKSKPVILVIGHNVM--PGRPIADYLEENGM 258 (784)
T ss_pred cCCCCcEEEEECCCch--HHHHHHHHHhChhH
Confidence 3556689999997654 56677888775543
No 447
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=47.73 E-value=35 Score=40.51 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=35.9
Q ss_pred cCceEEEEeccCccC------------ccCCCCCCeEEEEcccCCcccc-ccceeccCCC
Q 004627 572 ESAKFVYLMGADDVD------------LEKLPNDAFVVYQGHHGDHGVY-RANVILPASA 618 (741)
Q Consensus 572 ~~ik~l~l~g~np~~------------~~al~k~~fvV~~d~~~~eta~-~ADvVLP~a~ 618 (741)
...+.++++|.||.. .++.++..-+|++|+..++||. .||+.||...
T Consensus 165 ~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~irP 224 (617)
T cd02770 165 KDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIPIRP 224 (617)
T ss_pred hcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEECCCC
Confidence 357899999999831 1222344568999999999996 8999999764
No 448
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=47.60 E-value=93 Score=32.95 Aligned_cols=106 Identities=18% Similarity=0.088 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 437 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Il 437 (741)
+++|+.+++.|.+. ++|.+++.+.+..-..++..+ +..+|-+........ ... .....+..-|++|
T Consensus 117 ~~~l~~av~~L~~A--~rI~~~G~g~S~~vA~~~~~~-l~~ig~~~~~~~d~~----~~~-------~~~~~~~~~Dv~i 182 (281)
T COG1737 117 EEALERAVELLAKA--RRIYFFGLGSSGLVASDLAYK-LMRIGLNVVALSDTH----GQL-------MQLALLTPGDVVI 182 (281)
T ss_pred HHHHHHHHHHHHcC--CeEEEEEechhHHHHHHHHHH-HHHcCCceeEecchH----HHH-------HHHHhCCCCCEEE
Confidence 67788888888876 567777655554433343333 445665433332211 000 1345667788999
Q ss_pred EEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC-CCCCccccc
Q 004627 438 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA-TDLNYDHQH 480 (741)
Q Consensus 438 l~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~-~~~t~~~~~ 480 (741)
.+.--... +-+...+..+ +++|+++|.|-.. .++.+..++
T Consensus 183 ~iS~sG~t--~e~i~~a~~a-k~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 183 AISFSGYT--REIVEAAELA-KERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred EEeCCCCc--HHHHHHHHHH-HHCCCcEEEEcCCCCCchhhhhc
Confidence 88765433 3333444445 4599999999654 444444443
No 449
>PRK05858 hypothetical protein; Provisional
Probab=46.77 E-value=27 Score=40.72 Aligned_cols=104 Identities=21% Similarity=0.128 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCC-CccccccCCE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNT-SISGLEKADC 435 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~-~~~di~~ad~ 435 (741)
.+.++.+++.|.+. ++..++.|.... .+....+.+|++++|.+.+.+...-.....+.- .+ .+. ....++++|+
T Consensus 190 ~~~i~~~~~~L~~A--krPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hp-l~-~~~~~~~~l~~aD~ 265 (542)
T PRK05858 190 PDALARAAGLLAEA--QRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHP-LA-FSRARGKALGEADV 265 (542)
T ss_pred HHHHHHHHHHHHhC--CCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCc-hh-hhHHHHHHHHhCCE
Confidence 46788889999876 456677775432 233456889999999887644332111111100 00 111 1245689999
Q ss_pred EEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 436 FLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 436 Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
||.+|+.+.. ..... + . .++.++|.||+..
T Consensus 266 vl~vG~~~~~-~~~~~-~----~-~~~~~~i~id~d~ 295 (542)
T PRK05858 266 VLVVGVPMDF-RLGFG-V----F-GGTAQLVHVDDAP 295 (542)
T ss_pred EEEECCCCcc-ccccc-c----c-CCCCEEEEECCCH
Confidence 9999986422 11111 1 1 2357999999753
No 450
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=46.62 E-value=27 Score=27.56 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=23.0
Q ss_pred EEEECCEEEEeCCCChHHHHHHHCCC
Q 004627 71 EVFVDGYPLKIPKGFTVLQACEVAGV 96 (741)
Q Consensus 71 ~~~idg~~~~~~~g~tvl~a~~~~g~ 96 (741)
+|++||++++++++.|+.+.-.+.+-
T Consensus 2 ~I~vN~k~~~~~~~~tl~~lr~~~k~ 27 (57)
T PF14453_consen 2 KIKVNEKEIETEENTTLFELRKESKP 27 (57)
T ss_pred EEEECCEEEEcCCCcCHHHHHHhhCC
Confidence 68999999999999999888877663
No 451
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=46.31 E-value=14 Score=43.34 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=37.9
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCccccccceeccCCCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS 620 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~ 620 (741)
...+.++++|.||.. .++.++..-+|++|+..++|+..||+.||...-.
T Consensus 158 ~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~irPGT 215 (567)
T cd02765 158 VNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPIRPGT 215 (567)
T ss_pred hcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEeccCCCc
Confidence 467899999999942 1233345568899999999999999999986433
No 452
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=45.82 E-value=1.2e+02 Score=35.33 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=38.8
Q ss_pred ccCceEEEEeccCccCc-----------cCCCCCCeEEEEcccCCccccccceeccCCCCCCC
Q 004627 571 IESAKFVYLMGADDVDL-----------EKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEK 622 (741)
Q Consensus 571 ~~~ik~l~l~g~np~~~-----------~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~Ek 622 (741)
-...+.++++|.||+.. ++-++..-+|++|+..++|+..||..||...-.+.
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~PGtD~ 222 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGEDG 222 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCCCCcHH
Confidence 35678999999998421 11224556889999999999999999998754443
No 453
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=45.55 E-value=43 Score=34.14 Aligned_cols=44 Identities=30% Similarity=0.323 Sum_probs=29.2
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCc
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY 476 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~ 476 (741)
++++|++|++|+-... .|. ...++.+ +++|++++.|++..+..-
T Consensus 162 ~~~~dl~lvlGTsl~v-~p~-~~l~~~~-~~~~~~~i~iN~~~~~~~ 205 (224)
T cd01412 162 LAKADLFLVIGTSGVV-YPA-AGLPEEA-KERGARVIEINPEPTPLS 205 (224)
T ss_pred HHcCCEEEEECcCccc-hhH-HHHHHHH-HHCCCeEEEECCCCCCCC
Confidence 4589999999975433 242 2223333 358999999998766543
No 454
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=45.24 E-value=8.9 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.6
Q ss_pred cCCccccccccccccccCcccc
Q 004627 249 EKLMTSELSGNVIDICPVGALT 270 (741)
Q Consensus 249 ~~~~~c~~cg~cv~vCP~gAl~ 270 (741)
.....|..||.|..+||+-...
T Consensus 290 ~e~~~CIrCG~C~~~CPvy~~~ 311 (432)
T TIGR00273 290 REVLACIRCGACQNECPVYRHI 311 (432)
T ss_pred hhHhhCCCCCCccccCcchhcc
Confidence 3455799999999999986544
No 455
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=45.05 E-value=10 Score=39.03 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=18.2
Q ss_pred cCCcccccchhHHHhhhhcCcceeeee
Q 004627 210 VMTRCIQCTRCVRFATEVAGVQDLGML 236 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~i~g~~~l~~~ 236 (741)
+...|++||.|+.+||. ++|...
T Consensus 188 ~~~~C~~Cg~Cv~vCP~----gAL~~~ 210 (234)
T PRK07569 188 TSETCTSCGKCVQACPT----GAIFRK 210 (234)
T ss_pred ccccccchHHHHHhCCC----CcEEec
Confidence 45789999999999986 555543
No 456
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=44.64 E-value=30 Score=36.29 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=31.0
Q ss_pred cccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCC
Q 004627 428 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 475 (741)
Q Consensus 428 ~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t 475 (741)
.++++||++|++|+..... |. +..+..+ +++|+++++|++..+..
T Consensus 200 ~~~~~aDlllviGTSl~V~-pa-~~l~~~a-~~~g~~viiIN~~~t~~ 244 (260)
T cd01409 200 ARLAEADALLVLGSSLMVY-SG-YRFVLAA-AEAGLPIAIVNIGPTRA 244 (260)
T ss_pred HHHhcCCEEEEeCcCceec-ch-hhHHHHH-HHCCCcEEEEcCCCCCC
Confidence 4557899999999986543 22 2223334 34899999999976554
No 457
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=44.64 E-value=8.1 Score=40.28 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=15.0
Q ss_pred HhhCCCCCCCcCC-CCCChhhh
Q 004627 159 LMNHPLDCPICDQ-GGECDLQD 179 (741)
Q Consensus 159 l~~hp~dC~~C~~-~gec~lq~ 179 (741)
...+...|..|+. ...|....
T Consensus 152 ~~~~~~~CI~CG~C~saCP~~~ 173 (250)
T PRK07570 152 RAFDAAACIGCGACVAACPNGS 173 (250)
T ss_pred hhhCccccCCCcccccccCCcc
Confidence 3455677999987 77898653
No 458
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=44.22 E-value=65 Score=32.28 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=25.4
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
...-|++|++-.. .+.+.+..-++.+ +++|+++|+|-...
T Consensus 107 ~~~gDvli~iS~S--G~s~~v~~a~~~A-k~~G~~vI~IT~~~ 146 (196)
T PRK10886 107 GHAGDVLLAISTR--GNSRDIVKAVEAA-VTRDMTIVALTGYD 146 (196)
T ss_pred CCCCCEEEEEeCC--CCCHHHHHHHHHH-HHCCCEEEEEeCCC
Confidence 3566777777553 3344454555555 45999999997543
No 459
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=44.12 E-value=36 Score=39.79 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEC-CCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccc-cccCCE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAG-RLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISG-LEKADC 435 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g-~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~d-i~~ad~ 435 (741)
++.++.+++.|.+. ++..++.| +-........+.+|++.+|.+.+.+...-.....+..... |..... +++||+
T Consensus 193 ~~~~~~~~~~L~~A--krPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~--g~~~~~~~~~aDl 268 (554)
T TIGR03254 193 PDSVDRAVELLKDA--KRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSA--AAARSFALAEADV 268 (554)
T ss_pred HHHHHHHHHHHHhC--CCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchhh--hHHHHHHHhcCCE
Q ss_pred EEEEcCCh
Q 004627 436 FLLVGTQP 443 (741)
Q Consensus 436 Ill~G~Np 443 (741)
||++|+..
T Consensus 269 vl~lG~~~ 276 (554)
T TIGR03254 269 VMLVGARL 276 (554)
T ss_pred EEEECCCC
No 460
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.06 E-value=1.7e+02 Score=27.19 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEE
Q 004627 360 ALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLV 439 (741)
Q Consensus 360 Al~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~ 439 (741)
+++.+++.+++. +.+.+++.+.+-.....+..+|.+..+.+-.... ...|. -.+...++.-+.+|++
T Consensus 2 ~~~~~a~~~~~~--~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~------~~e~~-----hg~~~~~~~~~~vi~i 68 (153)
T cd05009 2 DIKELAEKLKEA--KSFYVLGRGPNYGTALEGALKLKETSYIHAEAYS------AGEFK-----HGPIALVDEGTPVIFL 68 (153)
T ss_pred hHHHHHHHHhcc--CcEEEEcCCCCHHHHHHHHHHHHHHHhhcceecc------HHHhc-----cChhhhccCCCcEEEE
Confidence 466778888875 4565555444333333333355544322111111 11111 1134445556666665
Q ss_pred cCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 440 GTQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 440 G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
-..- .+.... .++.+..+++|++++.|.....
T Consensus 69 s~~g-~t~~~~-~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 69 APED-RLEEKL-ESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred ecCC-hhHHHH-HHHHHHHHHcCCEEEEEecCCc
Confidence 5322 222222 2333444568999999987543
No 461
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=44.01 E-value=34 Score=26.39 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=36.2
Q ss_pred EEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEE
Q 004627 72 VFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIK 141 (741)
Q Consensus 72 ~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~ 141 (741)
|+.||+.++++.|+|+.+.+...+..++. ..+.+.++|... .=.+++.+|.+|.
T Consensus 4 ~~~~g~~~~~~~~~t~~~~~~~~~~~~~~-------------~~va~~vng~~v---dl~~~l~~~~~ve 57 (60)
T cd01668 4 FTPKGEIIELPAGATVLDFAYAIHTEIGN-------------RCVGAKVNGKLV---PLSTVLKDGDIVE 57 (60)
T ss_pred ECCCCCEEEcCCCCCHHHHHHHHChHhhh-------------heEEEEECCEEC---CCCCCCCCCCEEE
Confidence 55699999999999999988766543221 124567887432 2337777777664
No 462
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=43.38 E-value=45 Score=35.30 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCccccccc-CCCCCCCEEEc
Q 004627 87 VLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCA-MPALPGMKIKT 142 (741)
Q Consensus 87 vl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~-~~v~~gm~v~t 142 (741)
+.+++...|+.+--.=...-.++.|.|+.|.|++.+ +....|. -||=+.-+|.-
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~~~--~~~~~C~dGPvF~~~~v~~ 250 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTVGG--ETKFACVDGPEFDGHLVDF 250 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEECC--CEEEEeCCCCeeeCCEEeH
Confidence 567777788764111100112378999999999876 3357898 68888888765
No 463
>PRK13936 phosphoheptose isomerase; Provisional
Probab=42.93 E-value=96 Score=30.96 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=24.2
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
..-|++|.+..... .+.+..-++.+ +++|+++|.|-..
T Consensus 110 ~~~Dv~i~iS~sG~--t~~~~~~~~~a-k~~g~~iI~IT~~ 147 (197)
T PRK13936 110 QPGDVLLAISTSGN--SANVIQAIQAA-HEREMHVVALTGR 147 (197)
T ss_pred CCCCEEEEEeCCCC--cHHHHHHHHHH-HHCCCeEEEEECC
Confidence 46788888876433 33333334444 4589999998753
No 464
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=42.70 E-value=92 Score=32.72 Aligned_cols=97 Identities=21% Similarity=0.198 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 437 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Il 437 (741)
.+.++.+++.|.+. .+|.+++.+.+..-..++..+|. .+|-+....... .+. ......+..-|++|
T Consensus 115 ~~~i~~~~~~i~~a--~~I~i~G~G~S~~~a~~~~~~l~-~~g~~~~~~~~~------~~~-----~~~~~~~~~~D~vI 180 (284)
T PRK11302 115 PSAINRAVDLLTQA--KKISFFGLGASAAVAHDAQNKFF-RFNVPVVYFDDI------VMQ-----RMSCMNSSDGDVVV 180 (284)
T ss_pred HHHHHHHHHHHHcC--CeEEEEEcchHHHHHHHHHHHHH-hcCCceEecCCH------HHH-----HHHHHhCCCCCEEE
Confidence 35677788888776 45655554433222222223333 356433322110 000 00123456778888
Q ss_pred EEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 438 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 438 l~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
++..... .+.+..-++.+ +++|+++++|-..
T Consensus 181 ~iS~sG~--t~~~~~~~~~a-k~~g~~vI~IT~~ 211 (284)
T PRK11302 181 LISHTGR--TKSLVELAQLA-RENGATVIAITSA 211 (284)
T ss_pred EEeCCCC--CHHHHHHHHHH-HHcCCeEEEECCC
Confidence 8865432 23344444555 4599999999864
No 465
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=42.11 E-value=84 Score=37.68 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=38.0
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCccccccceeccCCCCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSE 621 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 621 (741)
.+.+.++++|.||.. .++.++..-+|++|+..++|+..||..||...-.+
T Consensus 154 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~i~Pgtd 212 (671)
T TIGR01591 154 ENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIPLKPGTD 212 (671)
T ss_pred HhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccCCCCCcH
Confidence 457899999999942 22334555688999999999999999998765443
No 466
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=42.07 E-value=19 Score=36.82 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=28.7
Q ss_pred cccccchhHHHhhhhcCcceeeeecCCCCceeeecccCCccccccccccccccCcc
Q 004627 213 RCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGA 268 (741)
Q Consensus 213 rCI~C~rCvr~C~~i~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gA 268 (741)
-|++|+-|...||.. ++.. ||- ......|..||.|.--||...
T Consensus 191 ~C~G~~TC~A~CP~~----ai~c--~Gc-------~g~~~~~~~~Ga~~v~~~rs~ 233 (247)
T COG1941 191 PCMGCGTCAASCPSR----AIPC--RGC-------RGNIPRCIKCGACFVSCPRSK 233 (247)
T ss_pred cccCchhhhccCCcc----CCcc--cCC-------cCCcccchhhhHHHHHHhHHh
Confidence 799999999999973 2222 121 112224889999988887654
No 467
>PRK01777 hypothetical protein; Validated
Probab=42.01 E-value=74 Score=27.91 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=39.4
Q ss_pred EEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEc
Q 004627 77 YPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKT 142 (741)
Q Consensus 77 ~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t 142 (741)
..+++++|.|+.||+...|+.-. ... + ......|-|+|... .=.+++++|.+|..
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~--~pe--i----~~~~~~vgI~Gk~v---~~d~~L~dGDRVeI 73 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLEL--RTD--I----DLAKNKVGIYSRPA---KLTDVLRDGDRVEI 73 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCcc--Ccc--c----ccccceEEEeCeEC---CCCCcCCCCCEEEE
Confidence 78899999999999999997532 111 1 12224677888432 45889999999874
No 468
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=41.90 E-value=2.7 Score=43.72 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=10.8
Q ss_pred CcccccchhHHHhhh
Q 004627 212 TRCIQCTRCVRFATE 226 (741)
Q Consensus 212 ~rCI~C~rCvr~C~~ 226 (741)
..|++|++|..+||.
T Consensus 203 ~~C~~C~~C~~vCP~ 217 (244)
T PRK12385 203 WSCTFVGYCSEVCPK 217 (244)
T ss_pred hhCcCcccccccCCC
Confidence 467777777777775
No 469
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.58 E-value=18 Score=41.32 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=37.7
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCccccccceeccCCCCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSE 621 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~E 621 (741)
.+.+.++++|.||.. .++-++..-+|++|+..++|+..||+.||...-.+
T Consensus 169 ~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~PGtD 227 (461)
T cd02750 169 YNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIKPGTD 227 (461)
T ss_pred hcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccCCCcH
Confidence 467899999999842 12223444678889999999999999999875443
No 470
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=41.36 E-value=8.6 Score=42.94 Aligned_cols=21 Identities=14% Similarity=0.531 Sum_probs=19.1
Q ss_pred cccccCCcccccchhHHHhhh
Q 004627 206 LVKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 206 ~i~~d~~rCI~C~rCvr~C~~ 226 (741)
.+.+|.++|+.|+.|+++||.
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~ 286 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPK 286 (402)
T ss_pred eEEEcchhcCcCccccccCcc
Confidence 677899999999999999985
No 471
>PRK00969 hypothetical protein; Provisional
Probab=41.25 E-value=31 Score=39.08 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=27.1
Q ss_pred EEEEECCEEEEeCCCChHHHHHHHCCCCc
Q 004627 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDI 98 (741)
Q Consensus 70 v~~~idg~~~~~~~g~tvl~a~~~~g~~i 98 (741)
++|.+||+++++++|.||-+|+..+|...
T Consensus 2 m~V~vng~~~~v~~g~Tl~Dal~~s~~~y 30 (508)
T PRK00969 2 MSVKVNGEEVTVPEGSTLKDALKASGAPY 30 (508)
T ss_pred eEEEECCEEeecCCCCcHHHHHhhcCCCc
Confidence 78999999999999999999999999874
No 472
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=41.06 E-value=2e+02 Score=32.82 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=36.4
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 481 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l 481 (741)
+.|.++++|.||....|-. .++++.+ +---+|++|+..+.|+.++++
T Consensus 338 ~ik~l~~~g~np~~~~p~~--~~~~al~-~~~~~V~~d~~~t~ta~~ADv 384 (472)
T cd02771 338 SADALIVLGNDLYRSAPER--RVEAALD-AAEFVVVLDHFLTETAERADV 384 (472)
T ss_pred CceEEEEeccCcccCCChH--HHHHHHh-cCCeEEEEecCCChhHHhCCE
Confidence 4789999999999988864 3366654 434789999999999887764
No 473
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=40.95 E-value=7.3 Score=43.12 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=34.2
Q ss_pred cccccccccccccCcccccccccccccccce-----------------eeeeecCCCCCCCCCceEee
Q 004627 253 TSELSGNVIDICPVGALTSKPFAFKARNWEL-----------------KGTETIDVTDAVGSNIRIDS 303 (741)
Q Consensus 253 ~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel-----------------~~~~siC~~C~~gC~i~v~v 303 (741)
.|..||.|.++||+-..+ ..+.-+.|..-+ -+..+.|..|...|...++.
T Consensus 10 ~Cv~Cg~C~~~CP~~~~~-~~~sPrgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i~~ 76 (388)
T COG0247 10 KCVHCGFCTNVCPSYRAT-EALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGIDI 76 (388)
T ss_pred hcCCCCcccCcCCCcccc-CCCCCchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCCcH
Confidence 499999999999999988 332222211111 14567788899999887775
No 474
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=40.87 E-value=20 Score=44.75 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=37.1
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCccccccceeccCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDHGVYRANVILPASA 618 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~ 618 (741)
...+.++++|+||.. .++..+..-||++|+..++||..||+.||...
T Consensus 223 ~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirP 278 (912)
T TIGR03479 223 FNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRV 278 (912)
T ss_pred hcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCC
Confidence 468899999999832 23334445688999999999999999999863
No 475
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.19 E-value=2e+02 Score=25.90 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEEc
Q 004627 361 LAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVG 440 (741)
Q Consensus 361 l~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G 440 (741)
++.+++.|.+. +++.+++.+. +......++..+..+|-........ .... .....+..-|++|++.
T Consensus 3 i~~~~~~i~~~--~~i~i~g~g~-s~~~a~~~~~~l~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~i~iS 68 (139)
T cd05013 3 LEKAVDLLAKA--RRIYIFGVGS-SGLVAEYLAYKLLRLGKPVVLLSDP------HLQL-----MSAANLTPGDVVIAIS 68 (139)
T ss_pred HHHHHHHHHhC--CEEEEEEcCc-hHHHHHHHHHHHHHcCCceEEecCH------HHHH-----HHHHcCCCCCEEEEEe
Confidence 55677777765 4565555443 3333444555566666532222110 0000 0112334567777776
Q ss_pred CChhhhhhHHHHHHHHHHHhCCCEEEEEccCCC
Q 004627 441 TQPRVEAAMVNARIRKTVRANNAKVGYIGPATD 473 (741)
Q Consensus 441 ~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~ 473 (741)
..-. .+....-++++ +++|.++++|-...+
T Consensus 69 ~~g~--~~~~~~~~~~a-~~~g~~iv~iT~~~~ 98 (139)
T cd05013 69 FSGE--TKETVEAAEIA-KERGAKVIAITDSAN 98 (139)
T ss_pred CCCC--CHHHHHHHHHH-HHcCCeEEEEcCCCC
Confidence 5322 23333334444 458999999987543
No 476
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=39.96 E-value=2.1e+02 Score=35.04 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=37.1
Q ss_pred ccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCc-ccccc
Q 004627 431 EKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY-DHQHL 481 (741)
Q Consensus 431 ~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~-~~~~l 481 (741)
.+-+.++++|.||..+.|.. .+++++.. +---+|++|+..+.|+ .++|+
T Consensus 536 g~ikal~v~g~Np~~s~p~~-~~~~~aL~-kl~f~Vv~d~f~teTa~~~ADv 585 (776)
T PRK09129 536 QPRKAYLLLNVEPELDCADP-AQARAALN-QAEFVVALSAFASKATLDYADV 585 (776)
T ss_pred CCcCEEEEeCCCccccccCH-HHHHHHHh-cCCeEEEEeeecCcchhhcCCE
Confidence 45789999999999988854 45566653 3234889999999998 78774
No 477
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=39.78 E-value=38 Score=35.74 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=30.9
Q ss_pred cccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCC
Q 004627 428 SGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDL 474 (741)
Q Consensus 428 ~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~ 474 (741)
..+++||++|++|+-.... |.. ...+.+ +++|++|+.|++..+.
T Consensus 195 ~~~~~aDlllviGTSl~V~-pa~-~l~~~a-~~~g~~vi~IN~~~t~ 238 (271)
T PTZ00409 195 KEIDKCDLLLVVGTSSSVS-TAT-NLCYRA-HRKKKKIVEVNISKTY 238 (271)
T ss_pred HHHHcCCEEEEECCCCccc-CHH-HHHHHH-HHcCCCEEEECCCCCC
Confidence 4567899999999976543 322 222333 4589999999998765
No 478
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=39.65 E-value=86 Score=36.39 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=37.6
Q ss_pred cCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcccccc
Q 004627 432 KADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL 481 (741)
Q Consensus 432 ~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~~~~l 481 (741)
+-+.++++|.||..+.|-.. +++++.+ +---+|++|+..|.|+.++|+
T Consensus 383 ~ik~l~v~~~Np~~~~p~~~-~~~~al~-k~df~Vv~d~~~teTa~~ADv 430 (524)
T cd02764 383 KVSALLVYDVNPVYDLPQGL-GFAKALE-KVPLSVSFGDRLDETAMLCDW 430 (524)
T ss_pred CccEEEEeCCCccccCCCcH-HHHHHHh-cCCeEEEecCCCChhHHhcCE
Confidence 35789999999999998754 4677764 333678899999999888774
No 479
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=39.59 E-value=1.2e+02 Score=31.78 Aligned_cols=98 Identities=19% Similarity=0.107 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 437 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Il 437 (741)
++.++.+++.|++. +.|.+++.+.+..-. ..+...+..+|-..... ... ..+ ......+..-|++|
T Consensus 115 ~~~l~~~~~~i~~a--~~I~i~G~G~s~~~A-~~~~~~l~~~g~~~~~~-~d~----~~~------~~~~~~~~~~Dv~I 180 (278)
T PRK11557 115 EEKLHECVTMLRSA--RRIILTGIGASGLVA-QNFAWKLMKIGINAVAE-RDM----HAL------LATVQALSPDDLLL 180 (278)
T ss_pred HHHHHHHHHHHhcC--CeEEEEecChhHHHH-HHHHHHHhhCCCeEEEc-CCh----HHH------HHHHHhCCCCCEEE
Confidence 46788888888876 466555545432222 22333334566533221 110 000 01234566788888
Q ss_pred EEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCC
Q 004627 438 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPAT 472 (741)
Q Consensus 438 l~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~ 472 (741)
++.-.. ..+-+..-++.++ ++|+++++|-...
T Consensus 181 ~iS~sg--~~~~~~~~~~~ak-~~ga~iI~IT~~~ 212 (278)
T PRK11557 181 AISYSG--ERRELNLAADEAL-RVGAKVLAITGFT 212 (278)
T ss_pred EEcCCC--CCHHHHHHHHHHH-HcCCCEEEEcCCC
Confidence 886532 2333444455554 5999999997643
No 480
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=39.51 E-value=1.8e+02 Score=31.43 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEE
Q 004627 386 AESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKV 465 (741)
Q Consensus 386 ~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gaki 465 (741)
++..-.+.++++..|+...+.+...- ++. +.......+.+ |+.++++|++-...---....++++.+++|.+.
T Consensus 108 ls~dp~~~k~A~~~G~rl~dvR~p~~----~l~--~~~tG~~~k~~-a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a 180 (339)
T COG3367 108 LSDDPEFVKLAERTGVRLDDVRKPPL----DLE--YLCTGMARKVD-AKVVLVVGTDCAVGKRTTALELREAAREEGIKA 180 (339)
T ss_pred hhcChHHHHHHHHcCCeeEeeccCcc----chh--hhccCcccccC-CcEEEEeccccccchhHHHHHHHHHHHHhCCcc
Confidence 33344578888888886665554321 111 11111233433 999999999987776666677888888899888
Q ss_pred EEEccCCCCC
Q 004627 466 GYIGPATDLN 475 (741)
Q Consensus 466 ivIdp~~~~t 475 (741)
..|..-.+..
T Consensus 181 ~fvaTgqtgi 190 (339)
T COG3367 181 GFVATGQTGI 190 (339)
T ss_pred ceEecCceee
Confidence 8888655443
No 481
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=39.42 E-value=11 Score=44.43 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.8
Q ss_pred ccccCCcccccchhHHHhhh
Q 004627 207 VKTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 207 i~~d~~rCI~C~rCvr~C~~ 226 (741)
..+|. +|+.||.|+++||.
T Consensus 574 ~~i~~-~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 574 AVIDP-LCTGCGVCAQICPF 592 (595)
T ss_pred ceeCC-CCcCHHHHHhhCcc
Confidence 34566 79999999999986
No 482
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=39.25 E-value=11 Score=43.78 Aligned_cols=19 Identities=21% Similarity=0.565 Sum_probs=16.5
Q ss_pred cccCCcccccchhHHHhhh
Q 004627 208 KTVMTRCIQCTRCVRFATE 226 (741)
Q Consensus 208 ~~d~~rCI~C~rCvr~C~~ 226 (741)
.+|...|++||.|+.+||.
T Consensus 604 ~id~~~C~GCg~C~~iCP~ 622 (640)
T COG4231 604 RIDPSSCNGCGSCVEVCPS 622 (640)
T ss_pred eecccccccchhhhhcCch
Confidence 3577789999999999986
No 483
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=39.18 E-value=5.7 Score=47.42 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCCcEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCCCcccccccCCCCCCCEEEcc-c
Q 004627 66 PEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTD-T 144 (741)
Q Consensus 66 ~~~~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~~~~~~aC~~~v~~gm~v~t~-~ 144 (741)
..+.+.|.+.|.... .+.-+.++++..|..= ..-.|++|-.=.+- ++..+|-.+.++ +
T Consensus 197 d~dkpnIvv~GHnp~--l~~~iv~~~ee~~l~~----------~i~~~G~cCt~~d~---------~R~~~~~~~~g~~~ 255 (731)
T cd01916 197 DKSKPVILVIGHNVA--PGAEIMDYLEENGLED----------KVEVGGICCTAIDL---------TRYNEKAKVVGPLS 255 (731)
T ss_pred CCCccEEEEECCCCc--cHHHHHHHHhccchhh----------CceEEEEecccchH---------hhhccCCCccCcHH
Confidence 455678888887654 5667788888777652 11225555432221 022234444443 2
Q ss_pred hhHHHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCC
Q 004627 145 PLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSD 187 (741)
Q Consensus 145 ~~~~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~ 187 (741)
-..+-.|-++++.+..| ..|... ++++.+..||..
T Consensus 256 ~qe~~i~tG~~D~~vvD--~qCi~~------~I~eiA~kyG~g 290 (731)
T cd01916 256 RQLKVVRSGIADVVVVD--EQCIRA------DILEEAQKLGIP 290 (731)
T ss_pred HHHHHHHcCCCcEEEEe--cccCcc------cHHHHHHHhCCC
Confidence 22233444444444444 234333 488999999964
No 484
>PRK15482 transcriptional regulator MurR; Provisional
Probab=39.13 E-value=1.3e+02 Score=31.72 Aligned_cols=97 Identities=18% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 437 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Il 437 (741)
.+.++.+++.|.+. ..|.+++.+.+..- ...+...+..+|....... .. .... .....+..-|++|
T Consensus 122 ~~~l~~~~~~i~~A--~~I~i~G~G~S~~~-A~~l~~~l~~~g~~~~~~~-d~-----~~~~-----~~~~~~~~~Dv~i 187 (285)
T PRK15482 122 YARLQKIIEVISKA--PFIQITGLGGSALV-GRDLSFKLMKIGYRVACEA-DT-----HVQA-----TVSQALKKGDVQI 187 (285)
T ss_pred HHHHHHHHHHHHhC--CeeEEEEeChhHHH-HHHHHHHHHhCCCeeEEec-cH-----hHHH-----HHHhcCCCCCEEE
Confidence 46788888888875 45655554443222 2223333345665322211 10 0000 0123456678988
Q ss_pred EEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 438 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 438 l~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
++.... ..+-+..-++.+ +++|+++|.|-..
T Consensus 188 ~iS~sg--~t~~~~~~~~~a-~~~g~~iI~IT~~ 218 (285)
T PRK15482 188 AISYSG--SKKEIVLCAEAA-RKQGATVIAITSL 218 (285)
T ss_pred EEeCCC--CCHHHHHHHHHH-HHCCCEEEEEeCC
Confidence 887643 233344444555 4589999999754
No 485
>PRK09939 putative oxidoreductase; Provisional
Probab=38.78 E-value=84 Score=38.35 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=34.2
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCCc------------------cccccceeccCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGDH------------------GVYRANVILPASA 618 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~e------------------ta~~ADvVLP~a~ 618 (741)
...+.++++|.||.. .++.++..-||++|+..++ |+..||+.||...
T Consensus 207 ~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irP 280 (759)
T PRK09939 207 EKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRI 280 (759)
T ss_pred hhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCC
Confidence 467899999999942 2233344568899997643 6889999998763
No 486
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=38.69 E-value=53 Score=38.21 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEC-CCCCHHHHHHHHHHHHHcCCCcccCCCCcc-----hhhhhhhcCcccCCCcccc-
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAG-RLSDAESMMALKDFLNRMGSNNVWCEGTGA-----QSNADLRSGYIMNTSISGL- 430 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g-~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~-----~~~~~~~~~~~~~~~~~di- 430 (741)
+++++.+++.|.+. ++..+++| +-...+....+.+|++.+|.+.+.+....- .+...+|...........+
T Consensus 193 ~~~~~~~~~~L~~A--krPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l 270 (530)
T PRK07092 193 PAALARLGDALDAA--RRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALL 270 (530)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHH
Q ss_pred ccCCEEEEEcCC
Q 004627 431 EKADCFLLVGTQ 442 (741)
Q Consensus 431 ~~ad~Ill~G~N 442 (741)
++||+||.+|++
T Consensus 271 ~~aDlvl~lG~~ 282 (530)
T PRK07092 271 DGHDLVLVIGAP 282 (530)
T ss_pred hhCCEEEEECCc
No 487
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=38.49 E-value=51 Score=33.47 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=29.5
Q ss_pred ccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCC
Q 004627 429 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLN 475 (741)
Q Consensus 429 di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t 475 (741)
.++++|++|++|+-.... | .+..++.+ +++|+++++|++..+..
T Consensus 164 ~~~~~Dl~lvlGTSl~V~-p-~~~l~~~~-~~~~~~~i~iN~~~~~~ 207 (218)
T cd01407 164 ALAKADLLLVIGTSLQVY-P-AAGLPLYA-PERGAPVVIINLEPTPA 207 (218)
T ss_pred HHhcCCEEEEeCCCcccc-c-HHHHHHHH-HHCCCeEEEECCCCCCC
Confidence 345689999999765444 3 23334444 34899999999865443
No 488
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=38.35 E-value=84 Score=37.01 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=34.0
Q ss_pred cCceEEEEeccCccC---------ccCCCCCCeEEEEcccCC-----------------ccccccceeccCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPNDAFVVYQGHHGD-----------------HGVYRANVILPASA 618 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k~~fvV~~d~~~~-----------------eta~~ADvVLP~a~ 618 (741)
...+.++++|.||.. .++-++..-||++|+..+ .++..||+.||...
T Consensus 162 ~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irP 234 (574)
T cd02767 162 EHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRI 234 (574)
T ss_pred hcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCC
Confidence 467899999999942 233334456788898754 56889999998763
No 489
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=38.32 E-value=3.8e+02 Score=25.93 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEE
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFL 437 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Il 437 (741)
++.++.+++.|.+. .+|.+++.+.+..-..++..+| ..+|-+...... . ....+..-|++|
T Consensus 20 ~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~~~--------~--------~~~~~~~~D~vI 80 (179)
T cd05005 20 EEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRL-MHLGLNVYVVGE--------T--------TTPAIGPGDLLI 80 (179)
T ss_pred HHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHH-HhCCCeEEEeCC--------C--------CCCCCCCCCEEE
Confidence 46677778888765 4665554443322222222233 344543222110 0 123456788888
Q ss_pred EEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 438 LVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 438 l~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
++..... .+-+..-++.+ +++|++++.|-..
T Consensus 81 ~iS~sG~--t~~~i~~~~~a-k~~g~~iI~IT~~ 111 (179)
T cd05005 81 AISGSGE--TSSVVNAAEKA-KKAGAKVVLITSN 111 (179)
T ss_pred EEcCCCC--cHHHHHHHHHH-HHCCCeEEEEECC
Confidence 8876432 33334445555 4589999988643
No 490
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=38.28 E-value=56 Score=40.13 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=35.7
Q ss_pred cCceEEEEeccCccC------------ccCC-CCCCeEEEEcccCCccc-cccceeccCCCC
Q 004627 572 ESAKFVYLMGADDVD------------LEKL-PNDAFVVYQGHHGDHGV-YRANVILPASAF 619 (741)
Q Consensus 572 ~~ik~l~l~g~np~~------------~~al-~k~~fvV~~d~~~~eta-~~ADvVLP~a~~ 619 (741)
...+.++++|.||.. .++. ++...+|++|+..++|+ ..||+.||...-
T Consensus 213 ~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~irPG 274 (797)
T TIGR02166 213 ENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIRPG 274 (797)
T ss_pred HhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCCCC
Confidence 457899999999831 1111 23456899999999997 589999998653
No 491
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=37.96 E-value=1.2e+02 Score=29.46 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=25.0
Q ss_pred cccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccC
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPA 471 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~ 471 (741)
+..-|++|++-.. .+.+.+..-++.+ +++|+++|.|-..
T Consensus 99 ~~~~Dv~I~iS~S--G~t~~~i~~~~~a-k~~Ga~vI~IT~~ 137 (177)
T cd05006 99 GQPGDVLIGISTS--GNSPNVLKALEAA-KERGMKTIALTGR 137 (177)
T ss_pred CCCCCEEEEEeCC--CCCHHHHHHHHHH-HHCCCEEEEEeCC
Confidence 4667888887653 3344444455555 4589999999543
No 492
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=37.93 E-value=56 Score=37.33 Aligned_cols=112 Identities=20% Similarity=0.101 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCCC---CHHHHHHHHHHHHHcCCCcccCCCCcchh---hhhhhcCcccCCC----
Q 004627 357 WRDALAVVAEVMLQAKPEEIVGIAGRLS---DAESMMALKDFLNRMGSNNVWCEGTGAQS---NADLRSGYIMNTS---- 426 (741)
Q Consensus 357 WdeAl~~iA~~Lk~i~~~~i~~~~g~~~---~~e~~~~~~~l~~~lGs~~~~~~~~~~~~---~~~~~~~~~~~~~---- 426 (741)
-.|+++.+++.+++. ++..++++... ..+ -.+++|+++.+.+.......-... .-.|..-|+-..+
T Consensus 195 ~~e~i~~i~~lI~~a--k~p~ILad~~~~r~~~~--~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~v 270 (557)
T COG3961 195 LSEVIDTIAELINKA--KKPVILADALVSRFGLE--KELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEV 270 (557)
T ss_pred HHHHHHHHHHHHhcc--CCcEEecchhhhhhhhH--HHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHH
Confidence 357778888888765 34555665432 232 357899999887765443321111 1122222221112
Q ss_pred ccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEEEccCCCCCcc
Q 004627 427 ISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYD 477 (741)
Q Consensus 427 ~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiivIdp~~~~t~~ 477 (741)
.+-+|.||+||.+|.-....+...+..- . +-.+++-++|......+
T Consensus 271 re~vE~aD~il~iG~~ltD~~Tg~Ft~~---~--~~~~~i~~~~~~v~I~~ 316 (557)
T COG3961 271 REAVESADLILTIGVLLTDFNTGGFTYQ---Y--KPANIIEIHPDSVKIKD 316 (557)
T ss_pred HHHhhcCCEEEEeceEEeeccccceeee---c--CcccEEEeccCeeEecc
Confidence 2346899999999998766654432221 1 23578999986544333
No 493
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=37.88 E-value=1e+02 Score=37.95 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=34.4
Q ss_pred cCceEEEEeccCccC---------ccCC-CCCCeEEEEcccCCcc-ccccceeccCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKL-PNDAFVVYQGHHGDHG-VYRANVILPASA 618 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al-~k~~fvV~~d~~~~et-a~~ADvVLP~a~ 618 (741)
...+.++++|.||.. .++. ++..-+|++|+..+++ +.+||..||...
T Consensus 375 e~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~irP 432 (797)
T PRK07860 375 EKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLRTAP 432 (797)
T ss_pred HhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceeccCC
Confidence 357899999999842 1222 3445688999999986 578999998654
No 494
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=37.82 E-value=12 Score=40.47 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.3
Q ss_pred ccccccccccccccCccccccc
Q 004627 252 MTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 252 ~~c~~cg~cv~vCP~gAl~~~~ 273 (741)
..|+.||.|+.+||. +|+...
T Consensus 5 ~~c~~Cg~C~a~cp~-~i~~~~ 25 (332)
T COG1035 5 GLCTGCGTCAAVCPY-AITERD 25 (332)
T ss_pred cccccchhhHhhCCc-eEEEec
Confidence 359999999999999 888765
No 495
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=37.82 E-value=8.2 Score=40.94 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=15.0
Q ss_pred cCCcccccchhHHHhhh
Q 004627 210 VMTRCIQCTRCVRFATE 226 (741)
Q Consensus 210 d~~rCI~C~rCvr~C~~ 226 (741)
....|..|+.|+.+||.
T Consensus 204 ~i~~C~~Cg~C~~~CP~ 220 (279)
T PRK12576 204 SSWRCTYCYSCSNVCPR 220 (279)
T ss_pred cCCcccCcccchhhCCC
Confidence 34689999999999996
No 496
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=37.75 E-value=23 Score=41.54 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=37.6
Q ss_pred cCceEEEEeccCccC---------ccCCCC--CCeEEEEcccCCccccccceeccCCCCC
Q 004627 572 ESAKFVYLMGADDVD---------LEKLPN--DAFVVYQGHHGDHGVYRANVILPASAFS 620 (741)
Q Consensus 572 ~~ik~l~l~g~np~~---------~~al~k--~~fvV~~d~~~~eta~~ADvVLP~a~~~ 620 (741)
.+.+.++++|.||.. .++.++ ..-+|++|+..++|+..||..||...-.
T Consensus 156 ~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~PGt 215 (565)
T cd02754 156 EHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGT 215 (565)
T ss_pred hhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCCCCc
Confidence 467899999999942 122233 4568999999999999999999887543
No 497
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=37.75 E-value=13 Score=41.39 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=13.9
Q ss_pred cccccchhHHHhhhhc
Q 004627 213 RCIQCTRCVRFATEVA 228 (741)
Q Consensus 213 rCI~C~rCvr~C~~i~ 228 (741)
.||.|++|+.+|++..
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 5999999999998743
No 498
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=36.84 E-value=6.2 Score=42.96 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=15.7
Q ss_pred HHHHhhCCCCCCCcCC-CCCChhh
Q 004627 156 EFLLMNHPLDCPICDQ-GGECDLQ 178 (741)
Q Consensus 156 e~~l~~hp~dC~~C~~-~gec~lq 178 (741)
|+-..++..+|.-|+. ...|+.-
T Consensus 144 ~~~~~~~~~~Ci~CG~C~s~CP~~ 167 (329)
T PRK12577 144 ERSKLDQTGNCILCGACYSECNAR 167 (329)
T ss_pred HHHHHHHhhhCcccCcccccCCCC
Confidence 3444555678988886 7789754
No 499
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=36.83 E-value=1.8e+02 Score=27.53 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=47.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccc--cCCEEEEEcCChhh---hhhHH
Q 004627 376 IVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLE--KADCFLLVGTQPRV---EAAMV 450 (741)
Q Consensus 376 i~~~~g~~~~~e~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~--~ad~Ill~G~Np~~---~~p~~ 450 (741)
|+++..+.....++....+.++.-|-................|.......++.+++ +.|.|++.|..... ..|.+
T Consensus 2 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l 81 (166)
T TIGR01382 2 LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKA 81 (166)
T ss_pred EEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHH
Confidence 56666665555555555555555453211111100000001111111122445543 67999999975322 24567
Q ss_pred HHHHHHHHHhCCCEEEEEcc
Q 004627 451 NARIRKTVRANNAKVGYIGP 470 (741)
Q Consensus 451 ~~rlr~a~~~~gakiivIdp 470 (741)
..++++..+ ++..|..|..
T Consensus 82 ~~~l~~~~~-~~~~i~~ic~ 100 (166)
T TIGR01382 82 VRLVREFVE-KGKPVAAICH 100 (166)
T ss_pred HHHHHHHHH-cCCEEEEECh
Confidence 778887764 7778887764
No 500
>PRK12474 hypothetical protein; Provisional
Probab=36.73 E-value=59 Score=37.68 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCC-HHHHHHHHHHHHHcCCCcccCCCC-----cchhhhhhhcCcccCCCccccc
Q 004627 358 RDALAVVAEVMLQAKPEEIVGIAGRLSD-AESMMALKDFLNRMGSNNVWCEGT-----GAQSNADLRSGYIMNTSISGLE 431 (741)
Q Consensus 358 deAl~~iA~~Lk~i~~~~i~~~~g~~~~-~e~~~~~~~l~~~lGs~~~~~~~~-----~~~~~~~~~~~~~~~~~~~di~ 431 (741)
+++++.+++.|.+. ++..++.|+... ....-.+.+|++.+|.+.+.+... .-+.-..-...+..+....-++
T Consensus 188 ~~~i~~~~~~L~~A--~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~ 265 (518)
T PRK12474 188 AETVERIAALLRNG--KKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLK 265 (518)
T ss_pred HHHHHHHHHHHHcC--CCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHh
Q ss_pred cCCEEEEEcCC
Q 004627 432 KADCFLLVGTQ 442 (741)
Q Consensus 432 ~ad~Ill~G~N 442 (741)
+||+||.+|+.
T Consensus 266 ~aDlvl~lG~~ 276 (518)
T PRK12474 266 DVEQLVLVGAK 276 (518)
T ss_pred hCCEEEEECCC
Done!