Query 004627
Match_columns 741
No_of_seqs 373 out of 3466
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 18:35:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004627.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1924-1928//hhsearch_pdb/004627hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_3 NADH-quinone oxidoreduc 1.0 1 1 1033.3 52.9 591 69-679 1-667 (783)
2 2iv2_X Formate dehydrogenase H 1.0 1 1 570.6 38.0 406 283-691 1-522 (715)
3 1h0h_A Formate dehydrogenase ( 1.0 1 1 561.1 34.7 400 276-677 3-656 (977)
4 2nap_A Protein (periplasmic ni 1.0 1 1 561.1 38.6 397 283-681 6-529 (723)
5 3ml1_A NAPA, periplasmic nitra 1.0 1 1 555.3 30.7 384 279-663 8-546 (802)
6 1kqf_A FDH-N alpha, formate de 1.0 1 1 554.2 33.5 399 279-678 39-699 (1015)
7 2e7z_A Acetylene hydratase AHY 1.0 1 1 546.8 23.3 405 285-693 1-535 (727)
8 1g8k_A Arsenite oxidase; molyb 1.0 1 1 532.3 30.5 398 275-677 6-606 (825)
9 2vpz_A Thiosulfate reductase; 1.0 1 1 529.1 27.2 398 282-691 36-560 (765)
10 2ivf_A Ethylbenzene dehydrogen 1.0 1 1 516.6 27.5 404 284-690 76-763 (976)
No 1
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=1.00 E-value=1 Score=1033.33 Aligned_cols=591 Identities=31% Similarity=0.500 Sum_probs=534.1
Q ss_pred CEEEEECCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECC---------------------CCCCC
Q ss_conf 089999998898089975999999879995545567999976534740899937---------------------79530
Q 004627 69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK---------------------SPKPV 127 (741)
Q Consensus 69 ~~~~~idg~~~~~~~g~til~a~~~~g~~ip~~C~~~~l~~~g~C~~C~V~v~~---------------------~~~~~ 127 (741)
||+|+|||+++++++|+|||+|++++|++||++|||++|+++|+||+|+|+|+| .++++
T Consensus 1 mv~i~idg~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~ 80 (783)
T 3i9v_3 1 MVRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLA 80 (783)
T ss_dssp CEEEECSSCEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCE
T ss_pred CEEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95999999999958998699999980997054689989798952388678962566664444322344653223589835
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC----------C---CCCCCCC
Q ss_conf 13359898999897166467988869999998309999877689987703358868199----------8---7764554
Q 004627 128 ASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGS----------D---RGRFTEM 194 (741)
Q Consensus 128 ~aC~~~v~~gm~v~t~~~~~~~~r~~~~e~~l~~hp~dC~~C~~~geC~lq~~~~~~g~----------~---~~~~~~~ 194 (741)
+||+|+|++||+|.|++++++++|+.+|||||+|||+|||+||++|||+|||+++.||+ . .+||.+.
T Consensus 81 ~aC~t~v~~gm~v~t~~~~~~~~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~ 160 (783)
T 3i9v_3 81 ASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFT 160 (783)
T ss_dssp ETTTCBCCSSEEEESSSHHHHHHHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSC
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33377988998899799999999999999999649987765788898789999998498643344444566655546545
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 322223-5676554333785436600498964320751124302799743640256875664432212235676101564
Q 004627 195 KRSVVD-KNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKP 273 (741)
Q Consensus 195 ~~~~~~-~~~~p~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~k~ 273 (741)
|+.++. ...+|++.+|++|||+|++|+|+|+++++..++++.+||.+..|... ...+.|.+||+|+++||+|||++++
T Consensus 161 k~~~~~~~~~~p~i~~d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~-~~~~~C~~CG~Cv~vCP~gAl~~~~ 239 (783)
T 3i9v_3 161 RRHVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTM-DFGLPSGFSGNITDICPVGALLDLT 239 (783)
T ss_dssp CCCCCCSEEEETTEEECTTTCCCCCHHHHHHHHTTCCCCCEECSCTTSCCEECS-STTCCSTTTTTHHHHCSSSSEEEGG
T ss_pred CCCCCCCCCCCCCEEECHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCEECCC-CCCCCCCCCHHHHHHCCCCCEECCC
T ss_conf 556776667886178765237776289987565429752565127875277468-8887885414278652447202145
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEE
Q ss_conf 21123543103443137899999981486359989998589888898665662111123567778888967837899802
Q 004627 274 FAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFK 353 (741)
Q Consensus 274 ~~~~~r~wel~~~~siC~~C~~gC~i~v~vrdg~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~ 353 (741)
+.|++|+|+++.++|+|++|+.||++.+++++|+|+||+|++++++|++|+|+||||+++++|.+||++||+|. +|+|+
T Consensus 240 ~~~~~r~w~~~~~~s~C~~C~~gC~i~v~v~~g~v~rv~~~~~~p~n~g~lC~kGr~~~~~~~~dRL~~Pl~R~-~G~~~ 318 (783)
T 3i9v_3 240 ARFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRLKTPLVRK-EGRLV 318 (783)
T ss_dssp GTTSCCTTTSEEEEEECCSSSSCCEEEEEEETBEEEEEEECCCTTSSCSCCCHHHHHTTTTTTTSCCCSCEEES-SSSEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECC-CCCEE
T ss_conf 32223332562788847878776463465589989832688999988875584166676633320245754734-89566
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 50999999999999970399959999779999999999999999739983027998200234321275568882242357
Q 004627 354 AVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKA 433 (741)
Q Consensus 354 ~iSWdEAl~~iA~~Lk~~~~~~i~~~~g~~~~~E~~~~~~~l~~~lGs~n~~~~~~~~~~~~~~~~~~~~~~~~~di~~a 433 (741)
+|||||||++||++|+++++++++++.|+..++|+.+++++|++.+|++|+++..+.+.... ...+.++.|+++|
T Consensus 319 ~iSWdeAl~~ia~~L~~i~~~~i~~~~s~~~t~E~~~~~~kl~~~lGt~n~d~~~~~~~~~~-----~~~~~~~~di~~a 393 (783)
T 3i9v_3 319 EATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPAS-----LFPPASLEDLLQA 393 (783)
T ss_dssp ECCHHHHHHHHHHHHHTCCTTSEEEEECTTCCTTHHHHHHHHHHHTTCSCEEETTCCSSCGG-----GSCBCCHHHHHHC
T ss_pred EECHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHC-----CCCCCCHHHHHHC
T ss_conf 71899999999999986254878999879888899999999999829996058722222202-----5789987788659
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHH------------------------HCCCEEEEECCCCCCCCCCCC------CCC
Q ss_conf 98999748811120279999999999------------------------299979999568897743002------499
Q 004627 434 DCFLLVGTQPRVEAAMVNARIRKTVR------------------------ANNAKVGYIGPATDLNYDHQH------LGT 483 (741)
Q Consensus 434 d~Ill~G~Np~~~~p~~~~rlr~a~~------------------------~~g~kii~Idp~~~~t~~~~~------lG~ 483 (741)
|+||+|| ||.+++|+++.|++++.+ ++|+||++|||+.+.++..++ +|+
T Consensus 394 d~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~l~i~PGt 472 (783)
T 3i9v_3 394 DFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGE 472 (783)
T ss_dssp SCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEEEECCSSC
T ss_pred CEEEEEC-CHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCEEECCCCC
T ss_conf 9999958-814868389999999987312320111366301244433454089889998178651567502247438985
Q ss_pred CHHHHHHHHC------CHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 9999999971------9999999986099949997687666777999999999999982997789961354470344434
Q 004627 484 GPKTLLEIAE------GRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAA 557 (741)
Q Consensus 484 d~~~l~~i~~------gi~~lA~~l~~ak~~~ii~G~g~~~~~~g~~~~~~i~~La~~~G~~~~~g~g~~~l~~~~n~~g 557 (741)
|.+.+..+.. .|+++|+.|+++++++|++|+++.++.++... .++ ++|++| +|++++++.+|.+|
T Consensus 473 D~all~al~~~li~~e~i~~~A~~la~a~~~~I~~G~g~~~~~~~~~~-----~~~-l~g~~G---~g~~~l~~~~N~~G 543 (783)
T 3i9v_3 473 EREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAER-----ARL-LAERKG---AKVLAMTPAANARG 543 (783)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHCSSCEEEECSHHHHCHHHHHH-----HHH-HHHHTT---CCEEECCSSTTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCHHHHCHHHHHH-----HHH-HHCCCC---CCEEECCCCCHHHH
T ss_conf 899999998753188999999999984799199988015446899999-----999-851039---97664467641234
Q ss_pred HHHCCCCCCCCC----CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCEECCCCCCCCCCCEEECCCCE
Q ss_conf 563499989778----76674399996369447358999975999856699111-2343422688778777327738980
Q 004627 558 ALDLGLVPESSN----SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGV-YRANVILPASAFSEKEGTYENTEGC 632 (741)
Q Consensus 558 ~~~~G~~p~~~~----~~~~ik~l~l~g~np~~~~al~k~~fvV~~d~~~t~ta-~~ADiVLP~at~~E~~gt~~n~eg~ 632 (741)
+.++|..|...+ ..+ +|++|++|.||... |++.+|+|++|+|+|+|+ ++||||||+++|+|++|+|+|+||+
T Consensus 544 a~~~G~~p~~~g~~~~~~g-ikal~v~g~np~~~--L~~~~fvVv~d~~~t~ta~~~ADvvLP~a~~~E~~gt~~n~eg~ 620 (783)
T 3i9v_3 544 LEAMGVLPGAKGASWDEPG-ALYAYYGFVPPEEA--LKGKRFVVMHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGR 620 (783)
T ss_dssp HHHHTCSCCSSCCCTTSCC-CSEEEESSCCCHHH--HTTCSEEEECCSSCCTTTTTTCSEECCCCCGGGCCEEEECTTSB
T ss_pred HHHCCCCCCCHHHHHHCCC-CEEEEEECCCHHHH--HHHCCEEEEEECCCCCHHHHCCCEEECCCCCCCCCCEEECCCCC
T ss_conf 6650888771223442279-85999948897998--74199799982768902652872992588655558769766883
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 69515656899999629999999999949999999999999999986
Q 004627 633 TQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTV 679 (741)
Q Consensus 633 vq~~~~av~p~gear~d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~ 679 (741)
+|.++++++|+||+|+||+|+++|+++||.+++|++.+++++.+.+.
T Consensus 621 ~~~~~~~v~p~ge~r~d~~il~~La~~lG~~~~~~~~~~~~~~l~~~ 667 (783)
T 3i9v_3 621 VLPLSPAPIENGEAEGALQVLALLAEALGVRPPFRLHLEAQKALKAR 667 (783)
T ss_dssp EEEECCCCBCCCSCCCHHHHHHHHHHTTSSCCSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 79852356898777569999999999838998889989999999866
No 2
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=1.00 E-value=1 Score=570.62 Aligned_cols=406 Identities=21% Similarity=0.325 Sum_probs=351.7
Q ss_pred EEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CC----CCCCCEEECC-CCCEEECC
Q ss_conf 034431378999999814863599899985898888986656621111235677-78----8889678378-99802509
Q 004627 283 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQ----RLNDPMIRGA-DGRFKAVN 356 (741)
Q Consensus 283 l~~~~siC~~C~~gC~i~v~vrdg~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~-~~----RL~~PliR~g-~g~~~~iS 356 (741)
++.++|+|++|+.||+|.+++++|+|+||+|+++ ++|+||+|+||+++++.+| ++ ||++||+|.+ +|+|++||
T Consensus 1 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~-p~n~g~lC~kg~~~~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~is 79 (715)
T 2iv2_X 1 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQG-KTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVS 79 (715)
T ss_dssp CEEEEEECSSBTTCCEEEEEEETTEEEEEEECCC-TTTTTCCCHHHHHTTGGGGCCCSSSCBCCSCEECCSTTSCCEECC
T ss_pred CCEEEEECCCCCCCCCEEEEEECCEEEEEEECCC-CCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCEEECCCCCCEEEEE
T ss_conf 9579898989789987699998999999996999-988887684267789875386431011258838127889778821
Q ss_pred HHHHHHHHHHHHHHCC----CCCEEEEECCCCC-HHHHHHHHHHHH-HCCCCCCCCCCCCC------HHHHHHHCCCCCC
Q ss_conf 9999999999997039----9959999779999-999999999999-73998302799820------0234321275568
Q 004627 357 WRDALAVVAEVMLQAK----PEEIVGIAGRLSD-AESMMALKDFLN-RMGSNNVWCEGTGA------QSNADLRSGYIMN 424 (741)
Q Consensus 357 WdEAl~~iA~~Lk~~~----~~~i~~~~g~~~~-~E~~~~~~~l~~-~lGs~n~~~~~~~~------~~~~~~~~~~~~~ 424 (741)
|||||++||++|++++ +++|+++.|+..+ +|+.+++++|++ .+|++|+++..+.| +....+|.. ..+
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~-~~~ 158 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNG-AMS 158 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCC-SCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCC
T ss_conf 9999999999999999732987089994688767477899999999856998678987632217889988652799-888
Q ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC------CCCCHHHH----------
Q ss_conf 88224235798999748811120279999999999299979999568897743002------49999999----------
Q 004627 425 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTL---------- 488 (741)
Q Consensus 425 ~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~g~kii~Idp~~~~t~~~~~------lG~d~~~l---------- 488 (741)
.++.|+++||+||+||+||.+++|+...++++++ ++|+||++|||+.+.|+..++ +|+|.+.+
T Consensus 159 ~~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~-~~G~klividPr~t~ta~~Ad~~l~irPGtD~aL~~al~~~ii~~ 237 (715)
T 2iv2_X 159 NAINEIDNTDLVFVFGYNPADSHPIVANHVINAK-RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEE 237 (715)
T ss_dssp SCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHH-HTTCEEEEECSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHCCCEEEEECCCHHHHCHHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8976884199999983784785779999999999-879949999387880347638785569996899999999999977
Q ss_pred ------------------------------HHHH----CCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ------------------------------9997----199999999860999499976876667779999999999999
Q 004627 489 ------------------------------LEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAK 534 (741)
Q Consensus 489 ------------------------------~~i~----~gi~~lA~~l~~ak~~~ii~G~g~~~~~~g~~~~~~i~~La~ 534 (741)
++++ +.|+++|+.|+++++++|++|+|+.++.+|.+..+++..|++
T Consensus 238 ~l~D~~fl~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~ 317 (715)
T 2iv2_X 238 NLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAM 317 (715)
T ss_dssp TCSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98679999987206999999885399999999879699999999999985898699976653634118999999999999
Q ss_pred HCCCCCCCCCCEEECCCHHHHHHHHHCCCCC-------------------------------CCCC-------CCCCCEE
Q ss_conf 8299778996135447034443456349998-------------------------------9778-------7667439
Q 004627 535 KGNVIRPDWNGLNVLLLNAAQAAALDLGLVP-------------------------------ESSN-------SIESAKF 576 (741)
Q Consensus 535 ~~G~~~~~g~g~~~l~~~~n~~g~~~~G~~p-------------------------------~~~~-------~~~~ik~ 576 (741)
++|+++++|+|++.+.+..|.+|+.++|..| +... ..+++|+
T Consensus 318 l~G~ig~~Ggg~~~~~~~~n~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~g~ik~ 397 (715)
T 2iv2_X 318 LTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRA 397 (715)
T ss_dssp HTTCSSSTTCSEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHHHHHTTCSCCCCSCCCCGGGHHHHHHTTSCCE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 85779988876577766546665134476767787655679878999999972987578889989999999987699559
Q ss_pred EEEECCCCCC--------CCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 9996369447--------35899997599985669911123434226887787773277389806951565689999962
Q 004627 577 VYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARD 648 (741)
Q Consensus 577 l~l~g~np~~--------~~al~k~~fvV~~d~~~t~ta~~ADiVLP~at~~E~~gt~~n~eg~vq~~~~av~p~gear~ 648 (741)
+|++|.||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|+++|.++++|.++++|+|+||+|+
T Consensus 398 l~~~g~Np~~~~p~~~~~~~al~~~d~~V~~d~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~ 477 (715)
T 2iv2_X 398 AYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKT 477 (715)
T ss_dssp EEEESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBCCBTTBCEEEECTTSEEEEECCCSCCSSSCBC
T ss_pred EEEECCCHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHCCCEECCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCC
T ss_conf 99958785641868899999996799599982525961512958865886354787176788618998213589856687
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCC
Q ss_conf 99999999999499999999999999999868998--78222388
Q 004627 649 DWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNL--LHVDEREP 691 (741)
Q Consensus 649 d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~--~~~~~l~~ 691 (741)
||+|+++|+++||.+++|.+.+++++++....|.+ .+|+++..
T Consensus 478 d~~Il~~La~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 522 (715)
T 2iv2_X 478 DWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGE 522 (715)
T ss_dssp HHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHCTTTTTCCHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 999999999985886886579999999986485545479999964
No 3
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=1.00 E-value=1 Score=561.12 Aligned_cols=400 Identities=17% Similarity=0.181 Sum_probs=341.9
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEE--ECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEC-CCCC
Q ss_conf 1235431034431378999999814863--599899985898888986656621111235677-78888967837-8998
Q 004627 276 FKARNWELKGTETIDVTDAVGSNIRIDS--RGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-ADGR 351 (741)
Q Consensus 276 ~~~r~wel~~~~siC~~C~~gC~i~v~v--rdg~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~-~~RL~~PliR~-g~g~ 351 (741)
.+.|+|+++.+.|+|++|++||++.+++ ++|+|+||+|++++++|+|++|+||++.++.+| ++||++||+|. |+|+
T Consensus 3 ~~~r~~~~~~~~t~C~~C~~gC~i~v~v~~~~g~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~rg~g~ 82 (977)
T 1h0h_A 3 MALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGSDQ 82 (977)
T ss_dssp CCCTTTTSEEEEEECSSBTTCCEEEEEECTTTCCEEEEEECTTCTTTTTCCCHHHHTHHHHHSCTTSCSSCEEECTTCSS
T ss_pred CCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 43342026799878989704698799998629989997727989988876587788899875285412488794068997
Q ss_pred EEECCHHHHHHHHHHHHHHCC----------------CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH---
Q ss_conf 025099999999999997039----------------9959999779999999999999999739983027998200---
Q 004627 352 FKAVNWRDALAVVAEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQ--- 412 (741)
Q Consensus 352 ~~~iSWdEAl~~iA~~Lk~~~----------------~~~i~~~~g~~~~~E~~~~~~~l~~~lGs~n~~~~~~~~~--- 412 (741)
|++|||||||++||++|++++ +++++++.|+..++|+.+++++|++.+|++|+++..+.|.
T Consensus 83 ~~~iSWdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~ 162 (977)
T 1h0h_A 83 WEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSAT 162 (977)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 46668999999999999998874045322356313567549997178765488999999999829996356543343137
Q ss_pred ---HHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC------CC
Q ss_conf ---234321275568882242357989997488111202799999999992999799995688977430024------99
Q 004627 413 ---SNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL------GT 483 (741)
Q Consensus 413 ---~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~g~kii~Idp~~~~t~~~~~l------G~ 483 (741)
....||.. ..+.++.|+++||+||+||+||.+++|+...++++++ ++|+|||+|||+++.|+..++. |+
T Consensus 163 ~~~~~~~~G~~-~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~-~~G~klivIDPr~t~ta~~AD~~l~irPGT 240 (977)
T 1h0h_A 163 VAALAESYGRG-AMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAK-DKGATLIHVDPRYTRTSTKCDLYAPLRSGS 240 (977)
T ss_dssp HHHHHHHHSCC-SCSSCTGGGGGCSEEEEESCCHHHHSTTHHHHHHHHH-HTTCEEEEECSSCCTTGGGCSEEECCCTTC
T ss_pred HHHHHHHHCCC-CCCCCHHHHHHCCEEEEECCCHHHHCCHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHCEEECCCCCC
T ss_conf 78899973899-8877888996398999977885795857989999999-879949997787884568738564337994
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 004627 484 G------------------------------------------------------------------------------- 484 (741)
Q Consensus 484 d------------------------------------------------------------------------------- 484 (741)
|
T Consensus 241 D~AL~~am~~~ii~~~l~D~~fv~~~t~~~~lV~~~~~~~~g~~~g~d~~~~~~~~~~~~~~l~~dg~~~~~~~l~~~~t 320 (977)
T 1h0h_A 241 DIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRC 320 (977)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHBGGGBBBCTTCCEETTEETTEETTTTEECGGGGCBCBCTTSCBCBCTTSCSTTB
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 69999999999997786457999986355201243334454533354533343332210122035566334421135542
Q ss_pred -------------HHHHHHHH----CCHHHHHHHHHCC----CCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -------------99999997----1999999998609----99499976876667779999999999999829977899
Q 004627 485 -------------PKTLLEIA----EGRHPFFSAISNA----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDW 543 (741)
Q Consensus 485 -------------~~~l~~i~----~gi~~lA~~l~~a----k~~~ii~G~g~~~~~~g~~~~~~i~~La~~~G~~~~~g 543 (741)
++++++++ +.|+++|+.|+++ ++++|++|+|+.++.+|.+..+++..|++++|+++++|
T Consensus 321 ~f~~l~~~~~~ytpe~aa~itGvp~~~I~~lA~~~a~~~~~~~~~~i~~g~G~~~~~~G~~~~~ai~~L~~ltGnig~~G 400 (977)
T 1h0h_A 321 VFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAG 400 (977)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTCSSSTT
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999870899999998893999999999999854577885699974641214629999999999999867899999
Q ss_pred CCEEECCCHHHHHHHHHCCCC-----------------------------------------------------------
Q ss_conf 613544703444345634999-----------------------------------------------------------
Q 004627 544 NGLNVLLLNAAQAAALDLGLV----------------------------------------------------------- 564 (741)
Q Consensus 544 ~g~~~l~~~~n~~g~~~~G~~----------------------------------------------------------- 564 (741)
+|++.++++.|.+|+.++|..
T Consensus 401 gg~~~~~g~~n~~g~~d~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 480 (977)
T 1h0h_A 401 GGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLN 480 (977)
T ss_dssp CSEEECCSBTTHHHHHHTTCBTTEETTTEECCBTTCCSHHHHHHHHCCCCCCTTCCCGGGGHHHHHHHHHHHHCTTSCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 62254677666666322355433476444667611002566530245433333334432346213356678762664321
Q ss_pred ------CCCC---C----------CCCCCEEEEEECCCCCC--------CCCCCCCCEEEEECCCCCCCCCCCC------
Q ss_conf ------8977---8----------76674399996369447--------3589999759998566991112343------
Q 004627 565 ------PESS---N----------SIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRAN------ 611 (741)
Q Consensus 565 ------p~~~---~----------~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~t~ta~~AD------ 611 (741)
|... . ..+++|++|+++.||+. .++|++++|+|++|+|+|+|+++||
T Consensus 481 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~ik~l~~~g~Np~~s~p~~~~~~~aL~kldf~Vv~D~~~teTa~~AD~~~~~~ 560 (977)
T 1h0h_A 481 EAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDP 560 (977)
T ss_dssp HHHHHSCCBCTTCCCSHHHHHHHHHTTCCCEEEEESCCHHHHSBSHHHHHHHHTTCSEEEEEESSCCTTTTGGGSTTCCG
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCC
T ss_conf 02113876666678668999988655982699995767012588989999998659979999465475787641357663
Q ss_pred -------EECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-------CC---------CCCCC-
Q ss_conf -------4226887787773277389806951565689999962999999999994-------99---------99999-
Q 004627 612 -------VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA-------GM---------RLPYD- 667 (741)
Q Consensus 612 -------iVLP~at~~E~~gt~~n~eg~vq~~~~av~p~gear~d~~Il~~La~~l-------g~---------~~~~~- 667 (741)
||||+++|+|++|+++|.++++|..+++|+|+||+|+||+|+++|+++| |- .++|.
T Consensus 561 AD~~~~~iVLPaa~~~E~~g~~~~~~~~v~~~~~~v~P~gear~d~~I~~~La~rl~~~~~~~g~~~~~~~~~~~~~y~~ 640 (977)
T 1h0h_A 561 KKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWV 640 (977)
T ss_dssp GGCCCEEEEEEBCCGGGCCEEEECTTCEEEEECCSSCCCTTCBCHHHHHHHHHHHHHHHHHHSCTTCCHHHHHSCGGGGB
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 22466469979997546787562678758964456699423665999999999999876521577653012126655445
Q ss_pred ------CHHHHHHHHH
Q ss_conf ------9999999999
Q 004627 668 ------TIGGIRSRIR 677 (741)
Q Consensus 668 ------~~~~i~~~~~ 677 (741)
+.+++++++.
T Consensus 641 ~~~~~~~~e~~~~e~~ 656 (977)
T 1h0h_A 641 NDHGHFDPHKIAKLIN 656 (977)
T ss_dssp CTTSCBCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 5567899999999863
No 4
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=1.00 E-value=1 Score=561.10 Aligned_cols=397 Identities=15% Similarity=0.198 Sum_probs=342.6
Q ss_pred EEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEC-CCCCEEECCHHHH
Q ss_conf 034431378999999814863599899985898888986656621111235677-78888967837-8998025099999
Q 004627 283 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-ADGRFKAVNWRDA 360 (741)
Q Consensus 283 l~~~~siC~~C~~gC~i~v~vrdg~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~-~~RL~~PliR~-g~g~~~~iSWdEA 360 (741)
.+.++|+|++|+.||+|.+++++|+|+||+|+++++ |++|+|+||+++++.+| ++||++||+|. ++|+|++||||||
T Consensus 6 ~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~~p-n~g~lC~kg~~~~~~~~~p~Rl~~Pl~R~~~~g~~~~isWdeA 84 (723)
T 2nap_A 6 EKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGNPNNH-NAGLLCLKGSLLIPVLNSKERVTQPLVRRHKGGKLEPVSWDEA 84 (723)
T ss_dssp SEEEEEECSSCTTCCEEEEEEETTEEEEEEECTTST-TTTCCCHHHHTCHHHHTCSCSCCSCEECSSTTSCCEECCHHHH
T ss_pred CEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCC-CCCCCCHHHHHHHHHHCCCHHHCCCEECCCCCCCEEEECHHHH
T ss_conf 618857898988898189999899899998489998-9774266676567764591232167762378997799419999
Q ss_pred HHHHHHHHHHCC----CCCEEEEECCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCH------HHHHHHCCCCCCCCCCC
Q ss_conf 999999997039----99599997799999999999999997-39983027998200------23432127556888224
Q 004627 361 LAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNR-MGSNNVWCEGTGAQ------SNADLRSGYIMNTSISG 429 (741)
Q Consensus 361 l~~iA~~Lk~~~----~~~i~~~~g~~~~~E~~~~~~~l~~~-lGs~n~~~~~~~~~------~~~~~~~~~~~~~~~~d 429 (741)
|++||++|++++ +++++++.|+..++|+.+++++|++. +|++|+++..+.|. ....||.. ..+.++.|
T Consensus 85 l~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~-~~~~~~~d 163 (723)
T 2nap_A 85 LDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKD-EPMGTYAD 163 (723)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSC-SCSSCGGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHCCCCC-CCCCCHHH
T ss_conf 99999999999986499729999577654255699999999866998431777544105767777424789-99878210
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCC------CCCCHH----------------
Q ss_conf 23579899974881112027999999999929-9979999568897743002------499999----------------
Q 004627 430 LEKADCFLLVGTQPRVEAAMVNARIRKTVRAN-NAKVGYIGPATDLNYDHQH------LGTGPK---------------- 486 (741)
Q Consensus 430 i~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~-g~kii~Idp~~~~t~~~~~------lG~d~~---------------- 486 (741)
+++||+||+||+||.+++|+...+++++++++ |+||++|||+.+.|+..++ +|+|.+
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irPGtD~al~~al~~~ii~~~l~D 243 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDN 243 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTTTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHCCEEEEECCCHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 76799999984784584838999999999617998799981767732365285550389819999999999999869946
Q ss_pred ---------------------------------HHHHHH----CCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf ---------------------------------999997----1999999998609994999768766677799999999
Q 004627 487 ---------------------------------TLLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTV 529 (741)
Q Consensus 487 ---------------------------------~l~~i~----~gi~~lA~~l~~ak~~~ii~G~g~~~~~~g~~~~~~i 529 (741)
++++++ +.|+++|+.|+++++++|++|+|+.++.+|.+..+++
T Consensus 244 ~~fl~~~tn~~~g~~~~~gf~~l~~~~~~~tpe~~a~itGv~~~~i~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~ 323 (723)
T 2nap_A 244 PRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSLWCMGINQRVQGVFANNLI 323 (723)
T ss_dssp HHHHHHHEEEECTTSCEECHHHHHHHHGGGCHHHHHHHHTSCHHHHHHHHHHHHHSSSEEEEECTTTSSSTTHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 89999754023466667389999998860899999998895999999999999838985999664101023589999999
Q ss_pred HHHHHHCCCCCCCCCCEEECCCHHHHHHH-HHCCCC------------------------------C---CCCC------
Q ss_conf 99999829977899613544703444345-634999------------------------------8---9778------
Q 004627 530 EAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLGLV------------------------------P---ESSN------ 569 (741)
Q Consensus 530 ~~La~~~G~~~~~g~g~~~l~~~~n~~g~-~~~G~~------------------------------p---~~~~------ 569 (741)
..|++++|+++++|+|++.+.+..|.+|+ .++|.. | +...
T Consensus 324 ~~L~~l~G~ig~~G~g~~~~~~~~n~~g~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~ 403 (723)
T 2nap_A 324 HNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEA 403 (723)
T ss_dssp HHHHHHHTCCSBTTBEEEECCCSTTHHHHTTTTTCSTTEETTTEETTCHHHHHHHHHHHTCCTTCSCSSCCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999858899989755777666555674100023778787655679989999999870898244888889898999998
Q ss_pred -CCCCCEEEEEECCCCCC--------CCCCCC-CCEEEEECCCC-CCCCCCCCEECCCCCCCCCCCEEECCCCEEEEECC
Q ss_conf -76674399996369447--------358999-97599985669-91112343422688778777327738980695156
Q 004627 570 -SIESAKFVYLMGADDVD--------LEKLPN-DAFVVYQGHHG-DHGVYRANVILPASAFSEKEGTYENTEGCTQQTLP 638 (741)
Q Consensus 570 -~~~~ik~l~l~g~np~~--------~~al~k-~~fvV~~d~~~-t~ta~~ADiVLP~at~~E~~gt~~n~eg~vq~~~~ 638 (741)
..+++|++|++|+||+. .++|++ ++|+|++|+|+ |+|+++||||||+++|+|++|+++|.++++|.+++
T Consensus 404 ~~~g~ik~l~~~g~Np~~~~p~~~~~~~al~~~~d~~V~~d~~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~~~~~ 483 (723)
T 2nap_A 404 LGRGDVKCMIICETNPAHTLPNLNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSLTEK 483 (723)
T ss_dssp HHHTSSCEEEEESCCHHHHSSSHHHHHHHHTCTTCEEEEECSCTTCGGGGTCSEEECBCCGGGSCEEEECTTSEEEEECC
T ss_pred HHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCEEECCCCCCCCCCCEECCCCEEEEEEC
T ss_conf 76588259999676712258788999999836898799982477886486495896478524467555367764899803
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHCC
Q ss_conf 5689999962999999999994999---999999999999998689
Q 004627 639 AVPTVGDARDDWKIIRALSEVAGMR---LPYDTIGGIRSRIRTVAP 681 (741)
Q Consensus 639 av~p~gear~d~~Il~~La~~lg~~---~~~~~~~~i~~~~~~~~p 681 (741)
+|+|+||+|+||+|+++|+++||.+ ++|.+.+++++++....+
T Consensus 484 ~v~P~ge~r~d~~Il~~La~~lg~~~~~~~~~~~~~~~~~~~~~~~ 529 (723)
T 2nap_A 484 AVDPPGQCRPTVNTLVEFARRAGVDPQLVNFRNAEDVWNEWRMVSK 529 (723)
T ss_dssp CSCCCTTCBCHHHHHHHHHHHHTCCTTTTCCSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 6689867786999999999985898657799999999999997467
No 5
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=1.00 E-value=1 Score=555.34 Aligned_cols=384 Identities=16% Similarity=0.147 Sum_probs=325.2
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEECC------CCC
Q ss_conf 5431034431378999999814863599899985898888986656621111235677-788889678378------998
Q 004627 279 RNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA------DGR 351 (741)
Q Consensus 279 r~wel~~~~siC~~C~~gC~i~v~vrdg~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~-~~RL~~PliR~g------~g~ 351 (741)
.+-++++++|+|++|++||+|.++++||+|+||+|++++++|+|++|+||++.++.+| ++||++||+|.+ +|+
T Consensus 8 ~~~~~~~~~t~C~~C~~gC~i~v~v~~g~iv~v~g~~~~p~n~G~lC~KG~~~~~~~~~p~Rl~~Pl~R~~~G~~~~~g~ 87 (802)
T 3ml1_A 8 EVTKLKWSKAPCRFCGTGCGVTVAVKDNKVVATQGDPQAEVNKGLNCVKGYFLSKIMYGQDRLTRPLMRMKNGKYDKNGD 87 (802)
T ss_dssp SCCSSEEEEEECSSCTTCCEEEEEEETTEEEEEEECTTCTTTTTCCCHHHHTGGGTTCBTTCCCSCEEEEETTEECTTSE
T ss_pred CCCCCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCEEECCCCCCCCCCC
T ss_conf 78887499678989878898499998999999874898987686548535527865169653028858056888776897
Q ss_pred EEECCHHHHHHHHHHHHHHCC----CCCEEEEECCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCH------HHHHHHCC
Q ss_conf 025099999999999997039----9959999779999999999999999-739983027998200------23432127
Q 004627 352 FKAVNWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLN-RMGSNNVWCEGTGAQ------SNADLRSG 420 (741)
Q Consensus 352 ~~~iSWdEAl~~iA~~Lk~~~----~~~i~~~~g~~~~~E~~~~~~~l~~-~lGs~n~~~~~~~~~------~~~~~~~~ 420 (741)
|++|||||||++||++|++++ +++|+++.++..++|+.+++++|++ .+|++|++...+.|. +...||..
T Consensus 88 ~~~isWdeAl~~ia~~l~~i~~~~G~~si~~~~sg~~~~e~~~~~~kl~~~~~gt~n~d~~~~~c~~~~~~~~~~~~G~~ 167 (802)
T 3ml1_A 88 FAPVTWDQAFDEMERQFKRVLKEKGPTAVGMFGSGQWTVWEGYAAAKLYKAGFRSNNIDPNARHCMASAAAGFMRTFGMD 167 (802)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHTCGGGEEEEECTTSCHHHHHHHHHHHHTTTCCCCEEEGGGGTTHHHHHHHHHHHSSC
T ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 67728999999999999999986198769999588875688999999999632776414872222246777667531889
Q ss_pred CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCCC------CCCC---------
Q ss_conf 556888224235798999748811120279999999999-299979999568897743002------4999---------
Q 004627 421 YIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR-ANNAKVGYIGPATDLNYDHQH------LGTG--------- 484 (741)
Q Consensus 421 ~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~-~~g~kii~Idp~~~~t~~~~~------lG~d--------- 484 (741)
.. ..++.|+++||+||+||+||.+++|+++.+++++++ ++|+|||+|||+++.|+..++ +|+|
T Consensus 168 ~~-~~~~~d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~irPGtD~aL~~~m~~ 246 (802)
T 3ml1_A 168 EP-MGCYDDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFKPQTDLAMLNYIAN 246 (802)
T ss_dssp SC-SSCGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEECCTTTHHHHHHHHHH
T ss_pred CC-CCCHHHHHHCCEEEEECCCHHHHCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCEECCCCCHHHHHHHHHHH
T ss_conf 88-88887896499999988874786959999999999866999899995887845677131766688979999999999
Q ss_pred -----------------------------------------------------------------HHHHHHHH----CCH
Q ss_conf -----------------------------------------------------------------99999997----199
Q 004627 485 -----------------------------------------------------------------PKTLLEIA----EGR 495 (741)
Q Consensus 485 -----------------------------------------------------------------~~~l~~i~----~gi 495 (741)
++++++++ +.|
T Consensus 247 ~ii~e~l~D~~Fv~~~t~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~gfe~l~~~v~~~tpe~~a~itGv~~~~I 326 (802)
T 3ml1_A 247 YIIRNNKVNKDFVNKHTVFKEGVTDIGYGLRPDHPLQKAAKNASDPGAAKVITFDEFAKFVSKYDADYVSKLSAVPKAKL 326 (802)
T ss_dssp HHHHTTCCCHHHHHHHEEEEEECCCCCCSCCTTSHHHHHCSSTTSTTCEEEECHHHHHHHHHTSCHHHHHHHHTCCHHHH
T ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHH
T ss_conf 99887985889999860333454544434444554200113543345556774999999875089999999889599999
Q ss_pred HHHHHHHHCCCC-CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHH-HHCCCCC--------
Q ss_conf 999999860999-499976876667779999999999999829977899613544703444345-6349998--------
Q 004627 496 HPFFSAISNAKN-PVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAA-LDLGLVP-------- 565 (741)
Q Consensus 496 ~~lA~~l~~ak~-~~ii~G~g~~~~~~g~~~~~~i~~La~~~G~~~~~g~g~~~l~~~~n~~g~-~~~G~~p-------- 565 (741)
+++|+.|+++++ +++++|+|+.+|.+|.+..+++.+|++++|+++++|+|++.+.++.|.+|. .++|..+
T Consensus 327 ~~lA~~~a~~~~~~~~~~~~G~~q~~~G~~~~~ai~~L~~ltGnig~pGgg~~~~~g~~n~~G~~~~~g~~~~~lp~~~~ 406 (802)
T 3ml1_A 327 DQLAELYADPNIKVMSLWTMGFNQHTRGTWANNMVYNLHLLTGKIATPGNSPFSLTGQPSACGTAREVGTFSHRLPADMV 406 (802)
T ss_dssp HHHHHHHHCTTSCEEEEESHHHHSSTTHHHHHHHHHHHHHHHTCCSBTTBEEEECCCSTTTTTTHHHHTCSTTBCSTTCB
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999997248978999466423146699999999999999688999998758887887655644431137444887766
Q ss_pred -------------------------CCCC-------CCCCCEEEEEECCCCCC---------CCCCCCCC-EEEEECCCC
Q ss_conf -------------------------9778-------76674399996369447---------35899997-599985669
Q 004627 566 -------------------------ESSN-------SIESAKFVYLMGADDVD---------LEKLPNDA-FVVYQGHHG 603 (741)
Q Consensus 566 -------------------------~~~~-------~~~~ik~l~l~g~np~~---------~~al~k~~-fvV~~d~~~ 603 (741)
+... ..++||++|++|.||+. .++|.+.+ |+|++|+|+
T Consensus 407 ~~~~~~~~~~~~~w~~p~~~~~~~~g~~~~~~~~~~~~g~ik~l~i~g~Np~~s~p~~~~~~~~al~~~~~f~Vv~D~~~ 486 (802)
T 3ml1_A 407 VTNPKHREEAERIWKLPPGTIPDKPGYDAVLQNRMLKDGKLNAYWVQVNNNMQAAANLMEEGLPGYRNPANFIVVSDAYP 486 (802)
T ss_dssp TTCHHHHHHHHHHTTCCTTCSCSSCCCCHHHHHHHHHHTSCCEEEEESCCHHHHSSCTTTTHHHHHHCTTCEEEEEESSC
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCHHHHHHHHCCCCEEEEEEECC
T ss_conf 79889999999974898333688889789999987445985799995887776187844999999866898089984044
Q ss_pred CCCCCCCCEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 911123434226887787773277389806951565689999962999999999994999
Q 004627 604 DHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMR 663 (741)
Q Consensus 604 t~ta~~ADiVLP~at~~E~~gt~~n~eg~vq~~~~av~p~gear~d~~Il~~La~~lg~~ 663 (741)
|+||++||||||+++|+|++|++.|.++++|..+++|+|+||+|+||||+.+|+++||.+
T Consensus 487 teTa~~ADivLPaa~~~Ek~g~~~n~~r~v~~~~~~v~P~gear~D~~I~~~La~rlG~~ 546 (802)
T 3ml1_A 487 TVTALAADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLVEFAKRFKVE 546 (802)
T ss_dssp CHHHHTCSEEEEEECGGGSCEEEECTTSEEEEECCCSCCSTTCEEHHHHHHHHHTTCBHH
T ss_pred CCHHHHCCEEECCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 853751968977887442476051265237986157689867887899999999986886
No 6
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=1.00 E-value=1 Score=554.20 Aligned_cols=399 Identities=15% Similarity=0.184 Sum_probs=341.4
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEE-----ECC--EEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEC-CC
Q ss_conf 5431034431378999999814863-----599--899985898888986656621111235677-78888967837-89
Q 004627 279 RNWELKGTETIDVTDAVGSNIRIDS-----RGP--EVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRG-AD 349 (741)
Q Consensus 279 r~wel~~~~siC~~C~~gC~i~v~v-----rdg--~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~-~~RL~~PliR~-g~ 349 (741)
.+.+.+.+.|+|++|++||++.+++ ++| +|+||+|++++++|+|++|+||++.++.+| ++||++||+|. |+
T Consensus 39 ~~~~~~~~~t~C~~C~~gC~l~v~v~~~~~~~G~~~v~~v~g~~~~p~n~G~lC~kG~~~~~~~~~pdRl~~Pl~R~~g~ 118 (1015)
T 1kqf_A 39 KLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAPGS 118 (1015)
T ss_dssp TTTTSEEEEEECSSBTTCCEEEEEEESCSCTTSCCEEEEEEECTTCTTTTTCCCHHHHTTHHHHTCTTBCCSCEEECTTC
T ss_pred CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCEEECCCC
T ss_conf 76776698668989778887799991244568965689998368899777764978998998744923310778811578
Q ss_pred CCEEECCHHHHHHHHHHHHHHCC----------------CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 98025099999999999997039----------------99599997799999999999999997399830279982002
Q 004627 350 GRFKAVNWRDALAVVAEVMLQAK----------------PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQS 413 (741)
Q Consensus 350 g~~~~iSWdEAl~~iA~~Lk~~~----------------~~~i~~~~g~~~~~E~~~~~~~l~~~lGs~n~~~~~~~~~~ 413 (741)
|+|++|||||||++||++|++++ +++++++.|+..++|+.+++++|++.+|++|+++..+.|..
T Consensus 119 g~~~~iSWdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~ 198 (1015)
T 1kqf_A 119 DKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHG 198 (1015)
T ss_dssp SSCEECCHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTH
T ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 86357789999999999999987640444344673125676599971787760889999999998399976775300331
Q ss_pred ------HHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC------
Q ss_conf ------34321275568882242357989997488111202799999999992999799995688977430024------
Q 004627 414 ------NADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL------ 481 (741)
Q Consensus 414 ------~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~g~kii~Idp~~~~t~~~~~l------ 481 (741)
...||.. ..+.++.|+++||+||+||+||.+++|+...+++++++++|+|||+|||+++.|+..++.
T Consensus 199 ~~~~~~~~~~G~~-~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~irP 277 (1015)
T 1kqf_A 199 PTVASLAPTFGRG-AMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRS 277 (1015)
T ss_dssp HHHHHHHHHHSCC-SCSSCTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECCCT
T ss_pred HHHHHHHHHHCCC-CCCCCHHHHHHCCEEEEECCCHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCEEECCCC
T ss_conf 8988999973899-878798889619899998988146285599999999997798699990788854575174342079
Q ss_pred CC------------------------------------------------------------------------------
Q ss_conf 99------------------------------------------------------------------------------
Q 004627 482 GT------------------------------------------------------------------------------ 483 (741)
Q Consensus 482 G~------------------------------------------------------------------------------ 483 (741)
|+
T Consensus 278 GTD~AL~lam~~~ii~~~l~D~~fv~~~t~~~~LV~~d~~f~~g~~~g~d~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~ 357 (1015)
T 1kqf_A 278 GTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENGYAKRDETLTHP 357 (1015)
T ss_dssp TCHHHHHHHHHHHHHHTTCSCHHHHHHHBSTTBBBCTTCCEETTEETTEETTTTEECCTTSSBCBCTTSSBCBCTTSCST
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 84499999999999975885779998635861450356564545444544334665532112221457762344311243
Q ss_pred --------------CHHHHHHHH----CCHHHHHHHHHCC----CCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf --------------999999997----1999999998609----994999768766677799999999999998299778
Q 004627 484 --------------GPKTLLEIA----EGRHPFFSAISNA----KNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 541 (741)
Q Consensus 484 --------------d~~~l~~i~----~gi~~lA~~l~~a----k~~~ii~G~g~~~~~~g~~~~~~i~~La~~~G~~~~ 541 (741)
+++++++++ +.|+++|+.|+++ ++++|++|+|+.+|.+|.+..+++..|++++|++++
T Consensus 358 ~tvf~~l~~~~~~ytpe~aa~itGvp~e~I~~lA~~~a~a~~~~~~~~i~~g~G~~~~~~G~~~~rai~~L~~ltGnig~ 437 (1015)
T 1kqf_A 358 RCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGM 437 (1015)
T ss_dssp TBHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEESHHHHSSTTHHHHHHHHHHHHHHHTCTTC
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 22999999998618999999998939999999999998556788857999776301257379999999999998678999
Q ss_pred CCCCEEECCCHHHHHHHHHCCCC---------------------------------------------------------
Q ss_conf 99613544703444345634999---------------------------------------------------------
Q 004627 542 DWNGLNVLLLNAAQAAALDLGLV--------------------------------------------------------- 564 (741)
Q Consensus 542 ~g~g~~~l~~~~n~~g~~~~G~~--------------------------------------------------------- 564 (741)
+|+|++.+.++.|.+|+.++|..
T Consensus 438 pGgg~~~~~g~~n~~g~~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 517 (1015)
T 1kqf_A 438 AGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAA 517 (1015)
T ss_dssp TTCSEEECCCBTTHHHHHHTTCSTTEEGGGEECCBTTCCSHHHHHHHHSCCCSSSSCCCGGGGHHHHHHHHHHHHHGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99512678786677773112555445865557786221104444203564223443344211230345555554304444
Q ss_pred -----------CCCC-----------CCCCCCEEEEEECCCCCC--------CCCCCCCCEEEEECCCCCCCCCCC----
Q ss_conf -----------8977-----------876674399996369447--------358999975999856699111234----
Q 004627 565 -----------PESS-----------NSIESAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRA---- 610 (741)
Q Consensus 565 -----------p~~~-----------~~~~~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~t~ta~~A---- 610 (741)
|..+ ...+++|++|+++.||+. .++|++++|+|++|+|+|+|+++|
T Consensus 518 ~~~~~~~~~~~p~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np~~s~pd~~~~~~aL~kldf~Vv~D~~~teTa~~A~~~~ 597 (1015)
T 1kqf_A 518 QKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFWQNHG 597 (1015)
T ss_dssp CGGGGGGGGGSCCBSSCCCHHHHHHHHHTTCCCEEEEESCCHHHHSSSHHHHHHHHTTCSEEEEEESBCCTTTTTTSCCG
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCC
T ss_conf 42101353558755678788999998647984299996658300478989999999669969999361185898752145
Q ss_pred --------C-----EECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH-------C---------
Q ss_conf --------3-----4226887787773277389806951565689999962999999999994-------9---------
Q 004627 611 --------N-----VILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVA-------G--------- 661 (741)
Q Consensus 611 --------D-----iVLP~at~~E~~gt~~n~eg~vq~~~~av~p~gear~d~~Il~~La~~l-------g--------- 661 (741)
| ||||+++|+|++|+++|.++++|..+++|+|+||+|+||+|+++|+++| |
T Consensus 598 d~~d~~~aD~~~~~vVLPaa~~~Ek~g~~~n~~~~v~~~~~~v~P~gear~d~~I~~~La~rl~~~~~~~g~~~~~~~~~ 677 (1015)
T 1kqf_A 598 ESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMK 677 (1015)
T ss_dssp GGGCCCGGGCCCEEEEEEBCCGGGSCEEEECTTCEEEEECCCSCCSTTCBCHHHHHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred CCCCCCCHHCCCCEEEECCCCHHCCCCCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 44566600036654994698500158855247744897423469941265799999999999999875337765320014
Q ss_pred CCCCCC-----CHHHHHHHHHH
Q ss_conf 999999-----99999999998
Q 004627 662 MRLPYD-----TIGGIRSRIRT 678 (741)
Q Consensus 662 ~~~~~~-----~~~~i~~~~~~ 678 (741)
..++|. +.+++++++..
T Consensus 678 ~~~~y~~~~~~~~e~i~~e~~~ 699 (1015)
T 1kqf_A 678 MSWNYKQPHEPQSDEVAKENNG 699 (1015)
T ss_dssp SCCCCSSTTSCCHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHC
T ss_conf 6656566678999999999743
No 7
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=1.00 E-value=1 Score=546.83 Aligned_cols=405 Identities=15% Similarity=0.163 Sum_probs=328.7
Q ss_pred EEEECCCCCCCCCCCEEEEE-CCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCCCCEEECC----CCCEEECCH
Q ss_conf 44313789999998148635-9989998589888898-6656621111235677-788889678378----998025099
Q 004627 285 GTETIDVTDAVGSNIRIDSR-GPEVMRILPRLNEDIN-EEWISDKTRFCYDGLK-SQRLNDPMIRGA----DGRFKAVNW 357 (741)
Q Consensus 285 ~~~siC~~C~~gC~i~v~vr-dg~Vvri~p~~~~~vn-~g~iC~KGr~~~~~l~-~~RL~~PliR~g----~g~~~~iSW 357 (741)
+++|+|++|+.||+|.++++ +|+|+||+|++++++| +|++|+||+++++.+| ++||++||+|.| +|+|++|||
T Consensus 1 ~~~t~C~~C~~gC~i~v~v~~~g~v~rv~g~~~~p~n~~g~lC~kG~~~~~~~~~p~Rl~~Pl~R~g~~rG~g~~~~isW 80 (727)
T 2e7z_A 1 KKHVVCQSCDINCVVEAEVKADGKIQTKSISEPHPTTPPNSICMKSVNADTIRTHKDRVLYPLKNVGSKRGEQRWERISW 80 (727)
T ss_dssp CEEEECCSSTTCCEEEEEECTTSCEEEEECSSCCSSSCTTCCCHHHHTHHHHHTCTTCCCSCEEECSSSTTCCCEEECCH
T ss_pred CCCEECCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEECH
T ss_conf 97657899747898799998799799987689999888987176477689876093403474010588778897688069
Q ss_pred HHHHHHHHHHHHHCC----CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf 999999999997039----99599997799999999999999997399830279982002343212755688-8224235
Q 004627 358 RDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNT-SISGLEK 432 (741)
Q Consensus 358 dEAl~~iA~~Lk~~~----~~~i~~~~g~~~~~E~~~~~~~l~~~lGs~n~~~~~~~~~~~~~~~~~~~~~~-~~~di~~ 432 (741)
||||++||++|++++ +++|+++.|+..+.|+.+++++|++.+|++|++...+.|......+....++. ...|+++
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~n~~~~~~~c~~~~~~~~~~~~G~~~~~d~~~ 160 (727)
T 2e7z_A 81 DQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTLRRFMNLLGSPNWTSAMYMCIGNTAGVHRVTHGSYSFASFAD 160 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHHHHHHHHHTCCCEECGGGGTTHHHHHHHHHHHSSCEEECTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999999986298579997178987653499999999809997558741101279999997438998897235
Q ss_pred CCEEEEECCCHHHHHH-HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC------CCCCHH-------------------
Q ss_conf 7989997488111202-79999999999299979999568897743002------499999-------------------
Q 004627 433 ADCFLLVGTQPRVEAA-MVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPK------------------- 486 (741)
Q Consensus 433 ad~Ill~G~Np~~~~p-~~~~rlr~a~~~~g~kii~Idp~~~~t~~~~~------lG~d~~------------------- 486 (741)
||+||+||+||.+++| ++..++++++ ++|+||++|||+.+.|+..++ +|+|..
T Consensus 161 ad~il~~G~n~~~~~p~~~~~~l~~a~-~~G~klividPr~t~ta~~Ad~~l~irPGtD~al~~a~~~~ii~~~l~d~~f 239 (727)
T 2e7z_A 161 SNCLLFIGKNLSNHNWVSQFNDLKAAL-KRGCKLIVLDPRRTKVAEMADIWLPLRYGTDAALFLGMINVIINEQLYDKEF 239 (727)
T ss_dssp CSEEEEESCCCBTTBSHHHHHHHHHHH-HHTCEEEEECSSCCHHHHHCSEEECCCTTCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred CCEEEEECCCHHHCCCHHHHHHHHHHH-HCCCEEEEECCCCCCCHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 989999888812207878999999999-7799699989878744454366604788858999999999998778644999
Q ss_pred ---------------------HHHHHH----CCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf ---------------------999997----1999999998609994999768766677799999999999998299778
Q 004627 487 ---------------------TLLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRP 541 (741)
Q Consensus 487 ---------------------~l~~i~----~gi~~lA~~l~~ak~~~ii~G~g~~~~~~g~~~~~~i~~La~~~G~~~~ 541 (741)
++++++ +.|+++|+.|+++++++|++|+|+.++.+|.+..+++..|++++|++ +
T Consensus 240 v~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~i-~ 318 (727)
T 2e7z_A 240 VENWCVGFEELKERVQEYPLDKVAEITGCDAGEIRKAAVMFATESPASIPWAVSTDMQKNSCSAIRAQCILRAIVGSF-V 318 (727)
T ss_dssp HHHHEECHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHSSSEECCCCSGGGSSTTHHHHHHHHHHHHHHHTTT-T
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHCCC-C
T ss_conf 999968999999998608999988887869999999999998589839970723521002799999999999996782-1
Q ss_pred CCCCEEECCCHH-----------HHHH---HHHCC--CCCC-----------------------------CC------C-
Q ss_conf 996135447034-----------4434---56349--9989-----------------------------77------8-
Q 004627 542 DWNGLNVLLLNA-----------AQAA---ALDLG--LVPE-----------------------------SS------N- 569 (741)
Q Consensus 542 ~g~g~~~l~~~~-----------n~~g---~~~~G--~~p~-----------------------------~~------~- 569 (741)
+|+|++.+.+.. +..+ ...+| ..|. .. .
T Consensus 319 ~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~~~~~~~~~~l~~~~ 398 (727)
T 2e7z_A 319 NGAEILGAPHSDLVPISKIQMHEALPEEKKKLQLGTETYPFLTYTGMSALEEPSERVYGVKYFHNMGAFMANPTALFTAM 398 (727)
T ss_dssp SSSEEECBSCTTSCCHHHHTTGGGSCHHHHHHCTTTTTCGGGSHHHHGGGHHHHHHHHSCSSCCCSSCSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 08753467886655543334300068644445468344676312220001345543024455543344445689999999
Q ss_pred CCC---CCEEEEEECCCCCC--------CCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCEEECCCCE--EEEE
Q ss_conf 766---74399996369447--------3589999759998566991112343422688778777327738980--6951
Q 004627 570 SIE---SAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGC--TQQT 636 (741)
Q Consensus 570 ~~~---~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~t~ta~~ADiVLP~at~~E~~gt~~n~eg~--vq~~ 636 (741)
..+ ++|++|++|.||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|+++|.+++ +|..
T Consensus 399 ~~g~py~ik~l~~~g~Np~~~~p~~~~~~~aL~~l~~~V~~d~~~teTa~~ADvvLP~~~~~E~~g~~~~~~~~~~v~~~ 478 (727)
T 2e7z_A 399 ATEKPYPVKAFFALASNALMGYANQQNALKGLMNQDLVVCYDQFMTPTAQLADYVLPGDHWLERPVVQPNWEGIPFGNTS 478 (727)
T ss_dssp HHCCSSCCCEEEEESCCGGGSSSCHHHHHHHHHTCSEEEEEESSCCTTGGGCSEEEEBCCGGGCCBCSCSSTBCSEEECB
T ss_pred HCCCCCCEEEEEEECCCHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 71999661799991788431378889999998488978996246685076485986788756666530357875213887
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 565689999962999999999994999--999999999999998689987822238888
Q 004627 637 LPAVPTVGDARDDWKIIRALSEVAGMR--LPYDTIGGIRSRIRTVAPNLLHVDEREPAT 693 (741)
Q Consensus 637 ~~av~p~gear~d~~Il~~La~~lg~~--~~~~~~~~i~~~~~~~~p~~~~~~~l~~~~ 693 (741)
+++|+|+||+|+||+|+++|+++||.. ++|.+.+++++++.+..+ .+|+++...+
T Consensus 479 ~~~v~P~gear~d~~I~~~La~~lg~~~~~~~~~~~~~~~~~~~~~g--~~~~~l~~~g 535 (727)
T 2e7z_A 479 QQVVEPAGEAKDEYYFIRELAVRMGLEEHFPWKDRLELINYRISPTG--MEWEEYQKQY 535 (727)
T ss_dssp CCCSCCSTTCBCHHHHHHHHHHHTTCGGGCCCCSHHHHHHHHTGGGT--CCHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CCHHHHHHHC
T ss_conf 14437887876899999999997399755889999999999860328--9999999719
No 8
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Probab=1.00 E-value=1 Score=532.34 Aligned_cols=398 Identities=14% Similarity=0.102 Sum_probs=322.2
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEE-----------------------------------------ECCEEE--EE
Q ss_conf 11235431034431378999999814863-----------------------------------------599899--98
Q 004627 275 AFKARNWELKGTETIDVTDAVGSNIRIDS-----------------------------------------RGPEVM--RI 311 (741)
Q Consensus 275 ~~~~r~wel~~~~siC~~C~~gC~i~v~v-----------------------------------------rdg~Vv--ri 311 (741)
+++.|||+++.++|+|++|++||+|.+++ ++|+|+ ||
T Consensus 6 ~~~~~~~~~~~~~t~C~~C~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~v~i 85 (825)
T 1g8k_A 6 RITLPPANAQRTNMTCHFCIVGCGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDIMV 85 (825)
T ss_dssp BCCCCBTTCEEEEEECSSBTTCCEEEEEEEETTCCCCSSGGGBTTCCCTTSCCCTTSCCCCGGGEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 43568888648862588866875879997654444565433222233322345543333334221321136980888887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-C-----CCCCCCEEECCCCCEEECCHHHHHHHHHHHHHHCC----CCCEEEE--
Q ss_conf 5898888986656621111235677-7-----88889678378998025099999999999997039----9959999--
Q 004627 312 LPRLNEDINEEWISDKTRFCYDGLK-S-----QRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAK----PEEIVGI-- 379 (741)
Q Consensus 312 ~p~~~~~vn~g~iC~KGr~~~~~l~-~-----~RL~~PliR~g~g~~~~iSWdEAl~~iA~~Lk~~~----~~~i~~~-- 379 (741)
+|++++++|+||+|+||+++++.+| | +||++||+|. +|+|++|||||||++||++|++++ +++++++
T Consensus 86 ~g~~~~p~n~G~lC~KG~~~~~~~y~p~~~~~dRL~~Pl~R~-~g~~~~iSWdeAl~~ia~~l~~i~~~~G~~~i~~~~~ 164 (825)
T 1g8k_A 86 VPDKACVVNSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYA-ADEWVDTTWDHAMALYAGLIKKTLDKDGPQGVFFSCF 164 (825)
T ss_dssp EECTTCTTTTTCCCTTGGGGGGGSCCSSSTTTTCCCSCEEEC-SSSEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEEEC
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEC-CCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 528889888886383345478874056678635114875936-9965780599999999999999998649862899822
Q ss_pred --ECCCCCHHHHHHHHHHH-HHCCCCCCCCCCC-----CCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf --77999999999999999-9739983027998-----200234321275568882242357989997488111202799
Q 004627 380 --AGRLSDAESMMALKDFL-NRMGSNNVWCEGT-----GAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVN 451 (741)
Q Consensus 380 --~g~~~~~E~~~~~~~l~-~~lGs~n~~~~~~-----~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~ 451 (741)
+|+..+.|+.+++++|+ ..+|++|+++..+ .|.....++.. ..+.++.|+++||+||+||+||.+++|+.+
T Consensus 165 ~~~s~~~~~e~~~~~~k~~~~~lGt~n~~~~~r~~~~~~c~~~~~~G~~-~~~~~~~D~~~ad~il~~G~Np~~~~p~~~ 243 (825)
T 1g8k_A 165 DHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGIG-ELNNAYEDAQLADVIWSIGNNPYESQTNYF 243 (825)
T ss_dssp CCSSTTCSHHHHHHHHHHHHTTTCCCCEEETTBSSSCCTTHHHHHTTCC-SCCSCHHHHHHCSEEEEESCCHHHHSHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCEEECCCCCCCC-CCCCCHHHHHHCCEEEEECCCHHHHCCCHH
T ss_conf 5666775608889999999985578500344566656612211013578-989887778759999995889689682257
Q ss_pred H-HHHH--------HHH-------HCCCEEEEECCCCCCCCCCC----------CC----CCCHHH--------------
Q ss_conf 9-9999--------999-------29997999956889774300----------24----999999--------------
Q 004627 452 A-RIRK--------TVR-------ANNAKVGYIGPATDLNYDHQ----------HL----GTGPKT-------------- 487 (741)
Q Consensus 452 ~-rlr~--------a~~-------~~g~kii~Idp~~~~t~~~~----------~l----G~d~~~-------------- 487 (741)
. ++.+ +.+ ++|+||++|||+.+.|+..+ ++ |+|.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~klivIDPr~t~ta~~Ad~~~~~~a~~~l~irPGtD~al~~al~~~ii~~~l~ 323 (825)
T 1g8k_A 244 LNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIARHVAGNDRVLHLAIEPGTDTALFNGLFTYVVEQGWI 323 (825)
T ss_dssp HHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 66678864304788765412334568987999907887156665420356653586648983899999999999985885
Q ss_pred -------------------------HHHHH----CCHHHHHHHHHCCC------CCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf -------------------------99997----19999999986099------94999768766677799999999999
Q 004627 488 -------------------------LLEIA----EGRHPFFSAISNAK------NPVIIVGAGLFERKDKDAIFSTVEAI 532 (741)
Q Consensus 488 -------------------------l~~i~----~gi~~lA~~l~~ak------~~~ii~G~g~~~~~~g~~~~~~i~~L 532 (741)
+++++ +.|+++|+.|++++ +++|++|+|+.++.++....+++..|
T Consensus 324 D~~Fv~~~t~Gfd~~~~~~~~tpe~~a~itGv~~~~I~~~A~~~a~a~~~~~~~~~~i~~g~g~~~~~~g~~~~~ai~~L 403 (825)
T 1g8k_A 324 DKPFIEAHTKGFDDAVKTNRLSLDECSNITGVPVDMLKRAAEWSYKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALLDL 403 (825)
T ss_dssp CHHHHHHHEECHHHHHHHTCCCHHHHHHHHCCCHHHHHHHHHHHHSCCTTSCCCCEEEEECHHHHTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHCCHHHHHHHHHH
T ss_conf 78999986278999986546999999998895999999999999745555678845899712132320679999999999
Q ss_pred HHHCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCC-------CCCCCEEEEEECCCCCC--------CCCCCC-----
Q ss_conf 9982997789961354470344434563499989778-------76674399996369447--------358999-----
Q 004627 533 AKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVD--------LEKLPN----- 592 (741)
Q Consensus 533 a~~~G~~~~~g~g~~~l~~~~n~~g~~~~G~~p~~~~-------~~~~ik~l~l~g~np~~--------~~al~k----- 592 (741)
+.++|+++++|+|++.+.+..+ |.. ....|+... ..++++++|+++.||+. .++|.+
T Consensus 404 ~~l~Gnig~~Ggg~~~~~~~~~--g~~-~~~~~g~~~~~~~~~~~~g~~k~l~~~g~Np~~~~p~~~~~~~al~~~~~~~ 480 (825)
T 1g8k_A 404 VIATHNVGRRGTGCVRMGGHQE--GYT-RPPYPGDKKIYIDQELIKGKGRIMTWWGCNNFQTSNNAQALREAILQRSAIV 480 (825)
T ss_dssp HHHTTCSSSTTCCEEECCSBCB--CCE-ECCCSCSSCCCHHHHHHTTCCSEEEEESCCHHHHSTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCC--CCC-CCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCHHH
T ss_conf 9986899998887688876788--777-8877886555555675379724999973276667757899999997021222
Q ss_pred --------------------------CCEEEEECCCCCCCCCCCCEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCC
Q ss_conf --------------------------975999856699111234342268877877732773898069515656899999
Q 004627 593 --------------------------DAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDA 646 (741)
Q Consensus 593 --------------------------~~fvV~~d~~~t~ta~~ADiVLP~at~~E~~gt~~n~eg~vq~~~~av~p~gea 646 (741)
.+|+|++|+|+|+|+++||||||+++|+|++|+++|.++++|.++++|+|+||+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~al~~~~~fvVv~d~~~teTa~~ADvVLPaa~~~E~~g~~~~~~~~v~~~~~~v~P~gea 560 (825)
T 1g8k_A 481 KQAMQKARGATTEEMVDVIYEATQNGGLFVTSINLYPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGTA 560 (825)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHTTTCCEEEEEESSCCGGGGTCSEEEEBCCBTTBCEEEECTTCEEEEECCCSCCSTTC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHCEEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCC
T ss_conf 22431156765367899999876157777999715658337639699579987757735756864499831555894236
Q ss_pred CCHHHHHHHHHHHHC-------C--------CCCCCCHHHHHHHHH
Q ss_conf 629999999999949-------9--------999999999999999
Q 004627 647 RDDWKIIRALSEVAG-------M--------RLPYDTIGGIRSRIR 677 (741)
Q Consensus 647 r~d~~Il~~La~~lg-------~--------~~~~~~~~~i~~~~~ 677 (741)
|+||+|+++|+++|| . .++|.+.++++.++.
T Consensus 561 r~d~~Il~~La~~lg~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~~ 606 (825)
T 1g8k_A 561 MADCLIAARIANALRDMYQKDGKAEMAAQFEGFDWKTEEDAFNDGF 606 (825)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTCHHHHHHTCSCCCSSHHHHHHHTG
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 8799999999999855640146401220025677799899999999
No 9
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=1.00 E-value=1 Score=529.09 Aligned_cols=398 Identities=17% Similarity=0.153 Sum_probs=322.3
Q ss_pred CEEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEECC-----CCCEEEC
Q ss_conf 1034431378999999814863599899985898888986656621111235677-788889678378-----9980250
Q 004627 282 ELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA-----DGRFKAV 355 (741)
Q Consensus 282 el~~~~siC~~C~~gC~i~v~vrdg~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~-~~RL~~PliR~g-----~g~~~~i 355 (741)
+.+.++|+|++|+.||++.++++||+|+||+|++++++|+||+|+||+++++.+| ++||++||+|.| +|+|++|
T Consensus 36 ~~~~~~t~C~~C~~gC~i~v~v~~g~v~~v~g~~~~p~n~g~lC~kg~~~~~~~~~p~Rl~~Pl~R~g~~~rG~g~~~~i 115 (765)
T 2vpz_A 36 EVKSVYQICEGCFWRCGIVAHAVGNRVYKVEGYEANPKSRGRLCPRGQGAPQTTYDPDRLKRPLIRVEGSQRGEGKYRVA 115 (765)
T ss_dssp CCEEEEEECCSSTTCCEEEEEESSSCEEEEEECSSSTTTTTCCCHHHHHGGGGGGCTTSCCSCEEECTTCCSSSCCEEEC
T ss_pred CCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEEEE
T ss_conf 83799748988737886199998999999876899987788427005552776559870467756378887777966894
Q ss_pred CHHHHHHHHHHHHHHCC----CCCEEEEECCCCCHHHHHHHHHHH-HHCCCCCCCCCC-CCCHH------HHHHHCCCCC
Q ss_conf 99999999999997039----995999977999999999999999-973998302799-82002------3432127556
Q 004627 356 NWRDALAVVAEVMLQAK----PEEIVGIAGRLSDAESMMALKDFL-NRMGSNNVWCEG-TGAQS------NADLRSGYIM 423 (741)
Q Consensus 356 SWdEAl~~iA~~Lk~~~----~~~i~~~~g~~~~~E~~~~~~~l~-~~lGs~n~~~~~-~~~~~------~~~~~~~~~~ 423 (741)
||||||++||++|++++ +++|+++.| .+.| +++++|+ +.+|++|+++.. +.|.. ...||.. .
T Consensus 116 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~--~~~e--~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~--~ 189 (765)
T 2vpz_A 116 TWEEALDHIAKKMLEIREKYGPEAIAFFGH--GTGD--YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRP--I 189 (765)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCGGGCEEEEC--STTH--HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSC--C
T ss_pred EHHHHHHHHHHHHHHHHHHHCCCEEEEECC--CCCH--HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC--C
T ss_conf 099999999999999998629968999738--9717--999999997559986588862521167888877641899--8
Q ss_pred C-CCCCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC------CCCCH----------
Q ss_conf 8-882242357989997488111202-79999999999299979999568897743002------49999----------
Q 004627 424 N-TSISGLEKADCFLLVGTQPRVEAA-MVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGP---------- 485 (741)
Q Consensus 424 ~-~~~~di~~ad~Ill~G~Np~~~~p-~~~~rlr~a~~~~g~kii~Idp~~~~t~~~~~------lG~d~---------- 485 (741)
. .++.|++++|+||+||+||.+++| +...++++++ ++|+||++|||+.+.|+..++ +|+|.
T Consensus 190 ~~~~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~-~~G~klividPr~t~ta~~Ad~~l~irPGtD~al~~al~~~i 268 (765)
T 2vpz_A 190 GGHEPIDWENARYIVLIGHHIGEDTHNTQLQDFALAL-KNGAKVVVVDPRFSTAAAKAHRWLPIKPGTDTALLLAWIHVL 268 (765)
T ss_dssp CSSCCCCGGGCSEEEEESCCBTTBCCHHHHHHHHHHH-HTTCEEEEECSBCCTTGGGCSEEECCCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHH-HCCCEEEEECCCCCCCHHHCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 8777340205989999838955618748999999999-779989998998986421078696888885899999999999
Q ss_pred ------------------------------HHHHHHH----CCHHHHHHHHH-CCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf ------------------------------9999997----19999999986-099949997687666777999999999
Q 004627 486 ------------------------------KTLLEIA----EGRHPFFSAIS-NAKNPVIIVGAGLFERKDKDAIFSTVE 530 (741)
Q Consensus 486 ------------------------------~~l~~i~----~gi~~lA~~l~-~ak~~~ii~G~g~~~~~~g~~~~~~i~ 530 (741)
+++++++ +.|+++|+.|+ ++++++|++|+|+.++.+|.+..+++.
T Consensus 269 i~~~l~D~~fi~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~~a~~~~i~~g~g~~~~~~g~~~~~a~~ 348 (765)
T 2vpz_A 269 IYEDLYDKEYVAKYTVGFEELKAHVKDFTPEWAEKHTEIPAQVIREVAREMAAHKPRAVLPPTRHNVWYGDDTYRVMALL 348 (765)
T ss_dssp HHTTCSCHHHHHHHEECCHHHHHHTSSCCHHHHHHHHCSCHHHHHHHHHHHHTTTTSEECCCCSCCCSSTTTHHHHHHHH
T ss_pred HHCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 98687088999997429999999854599999988879599999999999996389779981665356564599999999
Q ss_pred HHHHHCCCCCCCCCCEEECCCHHHHHHHHH------------CC----------CCC-----------CCC--C-----C
Q ss_conf 999982997789961354470344434563------------49----------998-----------977--8-----7
Q 004627 531 AIAKKGNVIRPDWNGLNVLLLNAAQAAALD------------LG----------LVP-----------ESS--N-----S 570 (741)
Q Consensus 531 ~La~~~G~~~~~g~g~~~l~~~~n~~g~~~------------~G----------~~p-----------~~~--~-----~ 570 (741)
.|+.++|+++++|+.+ . +..+..|.++ ++ ..| ... . .
T Consensus 349 ~L~~l~G~ig~~Gg~~-~--~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~l~~~~~ 425 (765)
T 2vpz_A 349 YVNVLLGNYGRPGGFY-I--AQSPYLEKYPLPPLPLEPAAGGCSGPSGGDHEPEGFKPRADKGKFFARSTAIQELIEPMI 425 (765)
T ss_dssp HHHHHHTCBTSTTTBC-C--CBCCCCCCCCCCCCSSCCCCCCSSSCSSTTTTTSSSCCCTTTTSSSSCSCCTTTTTSHHH
T ss_pred HHHHHHCCCCCCCCCC-C--CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999828899998715-6--888875557753358887645126521245553237852124313577554999999997
Q ss_pred CC---CCEEEEEECCCCCC--------CCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCEE-EC--CCCEEEEE
Q ss_conf 66---74399996369447--------3589999759998566991112343422688778777327-73--89806951
Q 004627 571 IE---SAKFVYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTY-EN--TEGCTQQT 636 (741)
Q Consensus 571 ~~---~ik~l~l~g~np~~--------~~al~k~~fvV~~d~~~t~ta~~ADiVLP~at~~E~~gt~-~n--~eg~vq~~ 636 (741)
.+ ++|++|++|.||+. .++|++++|+|++|+|+|+|+++||||||+++|+|++|++ .+ .++++|.+
T Consensus 426 ~g~py~ik~l~~~g~Np~~~~p~~~~~~~aL~~ld~~V~~d~~~teTa~~ADvvLP~a~~~E~~g~~~~~~~~~~~v~~~ 505 (765)
T 2vpz_A 426 TGEPYPIKGLFAYGINLFHSIPNVPRTKEALKNLDLYVAIDVLPQEHVMWADVILPEATYLERYDDFVLVAHKTPFIQLR 505 (765)
T ss_dssp HCCSSCCCCEEEESCCHHHHSSCHHHHHHHHHTCSCEEEEESSCCTTTTTCSSEEEBCCTTSCCCCCEEECBSSCEEECC
T ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHCCEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 49987856999838792002789999999996599499972687836774688515886013566534578887527886
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 565689999962999999999994999--9999999999999986899878222388
Q 004627 637 LPAVPTVGDARDDWKIIRALSEVAGMR--LPYDTIGGIRSRIRTVAPNLLHVDEREP 691 (741)
Q Consensus 637 ~~av~p~gear~d~~Il~~La~~lg~~--~~~~~~~~i~~~~~~~~p~~~~~~~l~~ 691 (741)
+++|+|+||+|+||+|+++|+++||.+ ++|.+.+++++++..... .+|+++..
T Consensus 506 ~~~v~P~ge~r~d~~I~~~La~~lg~~~~~~~~~~~e~~~~~~~~~g--~~~~~l~~ 560 (765)
T 2vpz_A 506 TPAHEPLFDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQSLG--LDLETMKG 560 (765)
T ss_dssp CCSSCCCTTCBCHHHHHHHHHHHTTCTTSSCSSSHHHHHHHHHHHHT--CCHHHHHH
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CCHHHHHH
T ss_conf 13668887775899999999998398023898899999999873528--97999986
No 10
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=1.00 E-value=1 Score=516.55 Aligned_cols=404 Identities=12% Similarity=0.050 Sum_probs=324.7
Q ss_pred EEEEECC-CCCC--CCCCCEEEEECCEEEEECCC-------CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEECC---C
Q ss_conf 3443137-8999--99981486359989998589-------8888986656621111235677-788889678378---9
Q 004627 284 KGTETID-VTDA--VGSNIRIDSRGPEVMRILPR-------LNEDINEEWISDKTRFCYDGLK-SQRLNDPMIRGA---D 349 (741)
Q Consensus 284 ~~~~siC-~~C~--~gC~i~v~vrdg~Vvri~p~-------~~~~vn~g~iC~KGr~~~~~l~-~~RL~~PliR~g---~ 349 (741)
+.+.|+| ++|+ .+|++.++|+||+|+||+|+ +++++|++++|+||++.++.+| ++||++||+|+| +
T Consensus 76 ~~~~stc~~~C~~~~~C~i~v~v~dG~v~~v~g~~~~p~~~p~~p~n~g~~C~kG~~~~~~~y~p~Rl~~Pl~R~g~rG~ 155 (976)
T 2ivf_A 76 KVNWGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKRVGKRGE 155 (976)
T ss_dssp EEEEECCCSCCSSCCCCCEEEEEETTEEEEEEECCCCCCSSTTSCCCCSCCCTTGGGTHHHHTSTTBCCSCEEECSSTTS
T ss_pred EEEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 79970007899898777339999899999997488888778788877777570046678875194521687251467888
Q ss_pred CCEEECCHHHHHHHHHHHHHHCC----CCCEEEEECC-CCCHHHHHHHHHHHHHCCCCCCCCCCCC----CHHHHHHHCC
Q ss_conf 98025099999999999997039----9959999779-9999999999999997399830279982----0023432127
Q 004627 350 GRFKAVNWRDALAVVAEVMLQAK----PEEIVGIAGR-LSDAESMMALKDFLNRMGSNNVWCEGTG----AQSNADLRSG 420 (741)
Q Consensus 350 g~~~~iSWdEAl~~iA~~Lk~~~----~~~i~~~~g~-~~~~E~~~~~~~l~~~lGs~n~~~~~~~----~~~~~~~~~~ 420 (741)
|+|++||||||+++||++|++++ +++++++.|. ..+.+..+++++|++.+|+.|+++..+. .+....||..
T Consensus 156 g~~~~iSWdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~~ 235 (976)
T 2ivf_A 156 GKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKM 235 (976)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSCC
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHEECCC
T ss_conf 97578149999999999999999976986289970677532677999999999729906576655423332246503578
Q ss_pred CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC------CCC----------
Q ss_conf 5568882242357989997488111202799999999992999799995688977430024------999----------
Q 004627 421 YIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHL------GTG---------- 484 (741)
Q Consensus 421 ~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~g~kii~Idp~~~~t~~~~~l------G~d---------- 484 (741)
. ...++.|+++||+||+||+||.+++|...+++++++ ++|+|||+|||+++.|+..++. |+|
T Consensus 236 ~-~~~~~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar-~~GakvivVDPr~t~ta~~AD~wl~irPGTD~Al~~am~~~ 313 (976)
T 2ivf_A 236 H-MGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSEAR-YKGAEVVVIAPDFNPTTPAADLHVPVRVGSDAAFWLGLSQV 313 (976)
T ss_dssp C-CBCCGGGGGGCSEEEEESCCHHHHCTTTHHHHHHHH-HHTCEEEEECSSCCTTGGGCSEEECCCTTCHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHCCEEEEECCCHHHCCCHHHHHHHHHH-HCCCEEEEECCCCCCCHHHCCEEECCCCCCHHHHHHHHHHH
T ss_conf 7-777755575384899957894671557899999999-86997999889887632206717566888099999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 004627 485 -------------------------------------------------------------------------------- 484 (741)
Q Consensus 485 -------------------------------------------------------------------------------- 484 (741)
T Consensus 314 ii~e~l~D~~fv~~~t~g~~lv~~~~g~~l~~~d~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~l~g~~~~~g~~g 393 (976)
T 2ivf_A 314 MIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRKASRGTLKLDFMPALEGTFSARLKNG 393 (976)
T ss_dssp HHHTTCSCHHHHHHHBSTTSEEETTTCSBCBHHHHHSCCTTCEEEEETTTTEEEEECSSCCCCSSCCCCSCEEEEECTTS
T ss_pred HHHCCCCCHHHHHHHCCCCEEEECCCCCCCCHHHCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 98768744899997247755774179961241003566777428997688976047666544456723101588863778
Q ss_pred --------------------HHHHHHHH----CCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf --------------------99999997----199999999860999499976876667779999999999999829977
Q 004627 485 --------------------PKTLLEIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIR 540 (741)
Q Consensus 485 --------------------~~~l~~i~----~gi~~lA~~l~~ak~~~ii~G~g~~~~~~g~~~~~~i~~La~~~G~~~ 540 (741)
++++++++ +.|+++|+.|++++ ++|++|+|++++.+|.+..+++..|++++|+++
T Consensus 394 ~~~~~~t~f~~l~~~~~~~tpe~aa~itGVp~~~I~~lAr~~a~~~-~~i~~g~G~~~~~~g~~~~rai~~L~~l~Gnig 472 (976)
T 2ivf_A 394 KTIQVRTVFEGLREHLKDYTPEKASAKCGVPVSLIRELGRKVAKKR-TCSYIGFSSAKSYHGDLMERSLFLAMALSGNWG 472 (976)
T ss_dssp CEEEEEEHHHHHHHHGGGGSHHHHHHHHCCCHHHHHHHHHHHHHSC-EEEEECTTTTTBTTHHHHHHHHHHHHHHTTCSS
T ss_pred CEEEEEEHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6554302999999986139999999988949999999999998435-054125122300567999999999999847899
Q ss_pred CCCCCEEECC----CHHHHHHHHH----------------------------------------C----C--------CC
Q ss_conf 8996135447----0344434563----------------------------------------4----9--------99
Q 004627 541 PDWNGLNVLL----LNAAQAAALD----------------------------------------L----G--------LV 564 (741)
Q Consensus 541 ~~g~g~~~l~----~~~n~~g~~~----------------------------------------~----G--------~~ 564 (741)
++|+|++.+. +..|..|+.+ . . ..
T Consensus 473 ~~Ggg~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 552 (976)
T 2ivf_A 473 KPGTGAFAWAYSDDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDEMGNIEFMKVVTSAVGLVPPAMWLYY 552 (976)
T ss_dssp STTCCSCBCCCCCHHHHHHHHCSSCGGGTTTHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTEECHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99986554776767765432246863234531000236654445666655779998764125788644444542100147
Q ss_pred CC---------------------C---CC-C--------------CCCCEEEEEECCCCCC--------CCCC-CCCCEE
Q ss_conf 89---------------------7---78-7--------------6674399996369447--------3589-999759
Q 004627 565 PE---------------------S---SN-S--------------IESAKFVYLMGADDVD--------LEKL-PNDAFV 596 (741)
Q Consensus 565 p~---------------------~---~~-~--------------~~~ik~l~l~g~np~~--------~~al-~k~~fv 596 (741)
|. . +. . ..++|++|+++.||+. .++| +|++|+
T Consensus 553 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~p~~ik~l~i~g~Np~~s~p~~~~~~~al~~kld~~ 632 (976)
T 2ivf_A 553 HVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRPAPDKTPQVYMLLSQNPMRRKRSGAKMFPDVLFPKLKMI 632 (976)
T ss_dssp HSSTHHHHTCGGGSCTTSSSCHHHHHHHHHHTTSSCTTTSCSCTTSCCCEEEEESCCHHHHSTTHHHHHHHTTGGGCSEE
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHCCCCEE
T ss_conf 46665434554315422102668999999855874454446557898868999937776861889899999996288889
Q ss_pred EEECCCCCCCCCCCCEECCCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC-------C---C
Q ss_conf 99856699111234342268877877732773--8980695156568999996299999999999499-------9---9
Q 004627 597 VYQGHHGDHGVYRANVILPASAFSEKEGTYEN--TEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM-------R---L 664 (741)
Q Consensus 597 V~~d~~~t~ta~~ADiVLP~at~~E~~gt~~n--~eg~vq~~~~av~p~gear~d~~Il~~La~~lg~-------~---~ 664 (741)
|++|+|+|+|+.+||||||+++|+|++|+++| .++++|..+++|+|+||+|+||+|+++|+++||. . .
T Consensus 633 Vv~D~~~teTa~~ADiVLPaat~~Ek~g~~~~~~~~~~v~~~~~av~P~gear~d~~I~~~LA~rlg~~~~~~~~~~~~~ 712 (976)
T 2ivf_A 633 FALETRMSSSAMYADIVLPCAWYYEKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAIALILKKVGERAAARGLTEFND 712 (976)
T ss_dssp EEEESBCCTTGGGCSEEEEBCCTTEEEEECCCCSSSCEEEEEEECSCCSTTCBCHHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred EEEECCCCCCHHHCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99847779528658985257762445775257888876898613679997787899999999998565101366776344
Q ss_pred -------------C------CCCHHHHHHHHHHHC------CCCCCCCCCC
Q ss_conf -------------9------999999999999868------9987822238
Q 004627 665 -------------P------YDTIGGIRSRIRTVA------PNLLHVDERE 690 (741)
Q Consensus 665 -------------~------~~~~~~i~~~~~~~~------p~~~~~~~l~ 690 (741)
. +.+.+++++++.+.. ....+|+++.
T Consensus 713 ~~~~~~~~~~~~~~f~~~g~~~~~~e~~~~~~~~~~~~~~~~~g~t~e~l~ 763 (976)
T 2ivf_A 713 HNGRKRRYDELYKKFTMDGHLLTNEDCLKEMVDINRAVGVFAKDYTYEKFK 763 (976)
T ss_dssp TTSCEEEGGGHHHHHTTTTTCCSHHHHHHHHHHHHHHTTSSCTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 322222257799998635899998999999997644105766799999999
Done!