BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004628
(741 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/94 (43%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 166 STPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAY 225
STP+ ++LL L +LQ+KD +G F+ PV P Y +I+HPMDFGT+++K+ Y
Sbjct: 11 STPI--QQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEY 68
Query: 226 ATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 259
++ +F+ D L+C NAM YN PDT+Y++ A+ I
Sbjct: 69 KSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKI 102
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 64/106 (60%)
Query: 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLE 229
P LL +LD+LQ KD +F++PV +E+PDY + I+HPMDF T+R +L Y L
Sbjct: 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLH 72
Query: 230 QFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSD 275
+FE+D LI N M+YNA DT+++R A + + R++ D
Sbjct: 73 EFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVD 118
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 57/88 (64%)
Query: 174 LLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEK 233
LL L++LQ+KDT +FSEPV E+PDY + I+ PMDF T++ L Y + FE+
Sbjct: 11 LLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEE 70
Query: 234 DVFLICSNAMQYNAPDTIYFRQARSIHE 261
D LI SN ++YNA DTI++R A + E
Sbjct: 71 DFNLIVSNCLKYNAKDTIFYRAAVRLRE 98
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 58/90 (64%)
Query: 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLE 229
P ++ L ++ +LQ+KD FS PV P Y +I+HPMDF T++ K+ N Y ++E
Sbjct: 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE 67
Query: 230 QFEKDVFLICSNAMQYNAPDTIYFRQARSI 259
+ + + L+C+NAM YN P+TIY++ A+ +
Sbjct: 68 ELKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 72.8 bits (177), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 172 KKLLLFILD---RLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATL 228
++L LF+ D RL + +FS+PVD EE+ DY EVI+ PMD TV K+ Y T
Sbjct: 11 RELRLFLRDVTKRLATDKRFNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTA 70
Query: 229 EQFEKDVFLICSNAMQYNAPD 249
+ F KD+ LICSNA++YN PD
Sbjct: 71 KDFLKDIDLICSNALEYN-PD 90
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 178 ILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFL 237
+ RL + VF++PVDP+E+PDY VI+ PMD +V +K+ Y T++ + +D+ L
Sbjct: 18 VTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDL 77
Query: 238 ICSNAMQYNAPD 249
ICSNA++YN PD
Sbjct: 78 ICSNALEYN-PD 88
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD E L DYC++I+HPMD T+++KL Y ++F DV L+ SN +YN P
Sbjct: 25 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 84
Query: 249 DTIYFRQARSIHELAKKNFENLRQ 272
D AR + ++ + F + Q
Sbjct: 85 DHEVVAMARKLQDVFEMRFAKMLQ 108
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD E L DYC++I+HPMD T+++KL + Y ++F DV L+ SN +YN P
Sbjct: 33 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP 92
Query: 249 DTIYFRQARSIHELAKKNFENLRQDSDDNEPE 280
D AR + ++ + F + +EPE
Sbjct: 93 DHEVVAMARKLQDVFEMRFAKM-----PDEPE 119
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 177 FILDRLQKKDTYGV-----FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQF 231
FILD + + V F PV+ + +PDY +VI +PMD T+R ++ Y + E F
Sbjct: 172 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESF 231
Query: 232 EKDVFLICSNAMQYNAPDTIYFRQARSI 259
DV LI +N+++YN P++ Y + A+ I
Sbjct: 232 LDDVNLILANSVKYNGPESQYTKTAQEI 259
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F PV+ + + DY ++I PMD T+R + Y + E+F + + LI N+ YN P
Sbjct: 68 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 177 FILDRLQKKDTYGV-----FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQF 231
FILD + + V F PV+ + +PDY +VI +PMD T+R ++ Y + E F
Sbjct: 139 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESF 198
Query: 232 EKDVFLICSNAMQYNAPDTIYFRQARSI 259
DV LI +N+++YN P++ Y + A+ I
Sbjct: 199 LDDVNLILANSVKYNGPESQYTKTAQEI 226
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F PV+ + + DY ++I PMD T+R + Y + E+F + + LI N+ YN P
Sbjct: 35 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 92
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 177 FILDRLQKKDTYGV-----FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQF 231
FILD + + V F PV+ + +PDY +VI +PMD T+R ++ Y + E F
Sbjct: 151 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESF 210
Query: 232 EKDVFLICSNAMQYNAPDTIYFRQARSI 259
DV LI +N+++YN P++ Y + A+ I
Sbjct: 211 LDDVNLILANSVKYNGPESQYTKTAQEI 238
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F PV+ + + DY ++I PMD T+R + Y + E+F + + LI N+ YN P
Sbjct: 47 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 104
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 171 DKKLLLFILDRLQKKDTYGV-----FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAY 225
D+ FILD + + V F PV+ + +PDY +VI +PMD T+R ++ Y
Sbjct: 26 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKY 85
Query: 226 ATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 259
+ E F DV LI +N+++YN P++ Y + A+ I
Sbjct: 86 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 119
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD E L DYC++I+HPMD T+++KL Y ++F DV L+ SN +YN P
Sbjct: 44 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 103
Query: 249 DTIYFRQARSIHELAKKNFENL 270
D AR + ++ + F +
Sbjct: 104 DHEVVAMARKLQDVFEMRFAKM 125
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD E L DYC++I+HPMD T+++KL Y ++F DV L+ SN +YN P
Sbjct: 46 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105
Query: 249 DTIYFRQARSIHELAKKNFENL 270
D AR + ++ + F +
Sbjct: 106 DHEVVAMARKLQDVFEMRFAKM 127
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 191 FSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD E EL DY ++I+HPMD TV+ K+ Y + F DV L+ SN +YN P
Sbjct: 36 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 95
Query: 249 DTIYFRQARSIHELAKKNFENL 270
D AR + ++ + F +
Sbjct: 96 DHEVVAMARKLQDVFEMRFAKM 117
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 191 FSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD E EL DY ++I+HPMD TV+ K+ Y + F DV L+ SN +YN P
Sbjct: 31 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 90
Query: 249 DTIYFRQARSIHELAKKNFENL 270
D AR + ++ + F +
Sbjct: 91 DHEVVAMARKLQDVFEMRFAKM 112
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 172 KKLLLFILD---RLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATL 228
++L LF+ D RL + +FS+PV DY EVI+ PMD TV K+ Y T
Sbjct: 11 RELRLFLRDVTKRLATDKRFNIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTA 65
Query: 229 EQFEKDVFLICSNAMQYNAPD 249
+ F KD+ LICSNA++YN PD
Sbjct: 66 KDFLKDIDLICSNALEYN-PD 85
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 177 FILDRLQKKDTYGV-----FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQF 231
FILD + + V F PV+ + +PDY ++I +P+D T+R ++ Y + E F
Sbjct: 29 FILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESF 88
Query: 232 EKDVFLICSNAMQYNAPDTIYFRQARSI 259
DV LI +N+++YN P++ Y + A+ I
Sbjct: 89 LDDVNLILANSVKYNGPESQYTKTAQEI 116
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 178 ILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFL 237
IL LQ F +PV+ EE+PDY + I+ PMD T+ KL + Y +E F D L
Sbjct: 21 ILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARL 80
Query: 238 ICSNAMQYNAPDTIYFRQARSIHEL 262
+ +N YN +T Y++ A + +
Sbjct: 81 VFNNCRMYNGENTSYYKYANRLEKF 105
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD E L DYC++I+HP D T+++KL + Y ++F DV L SN +YN P
Sbjct: 31 FYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPP 90
Query: 249 DTIYFRQARSIHELAKKNF 267
D AR + ++ + F
Sbjct: 91 DHEVVAXARKLQDVFEXRF 109
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 10/107 (9%)
Query: 172 KKLLLFILDRLQKKDTYGV-FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATL 228
++ L+ L+ L ++D + F +PVDP+ L PDY +++++PMD T++ KL G Y
Sbjct: 15 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEP 74
Query: 229 EQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSD 275
Q+ DV+L+ +NA YN R+ +++ K E Q+ D
Sbjct: 75 WQYVDDVWLMFNNAWLYN-------RKTSRVYKFCSKLAEVFEQEID 114
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVDP+ L PDY +++++PMD T++ KL G Y Q+ DV+L+ +NA YN
Sbjct: 33 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYN-- 90
Query: 249 DTIYFRQARSIHELAKKNFENLRQDSD 275
R+ +++ K E Q+ D
Sbjct: 91 -----RKTSRVYKFCSKLAEVFEQEID 112
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD L DY ++I+HPMD TV+ K+ N Y ++F DV L+ SN +YN P
Sbjct: 25 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 84
Query: 249 DTIYFRQARSIHEL 262
D AR + ++
Sbjct: 85 DHDVVAMARKLQDV 98
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD L DY ++I+HPMD TV+ K+ N Y ++F DV L+ SN +YN P
Sbjct: 29 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 88
Query: 249 DTIYFRQARSIHEL 262
D AR + ++
Sbjct: 89 DHDVVAMARKLQDV 102
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 172 KKLLLFILDRLQKKDTYGV-FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATL 228
++ L+ L+ L ++D + F +PVDP+ L PDY ++++ PMD T++ KL G Y
Sbjct: 18 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEP 77
Query: 229 EQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 272
Q+ D++L+ +NA YN + ++ + E+ ++ + + Q
Sbjct: 78 WQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQ 121
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 167 TPLPDKKL--LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGA 224
TPL +K L +L LQ F EPVDP + PDY VI+ PMD T+ ++
Sbjct: 67 TPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRY 126
Query: 225 YATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 256
Y L +F D+ I N YN D+ +++ A
Sbjct: 127 YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCA 158
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD L DY ++I+HPMD TV+ K+ N Y ++F DV L+ SN +YN P
Sbjct: 31 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 90
Query: 249 DTIYFRQARSIHEL 262
D AR + ++
Sbjct: 91 DHDVVAMARKLQDV 104
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 171 DKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQ 230
D L IL ++ + F PV+ + +P Y +VI+ PMDF T+R KL++G Y LE
Sbjct: 11 DLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET 70
Query: 231 FEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 269
F DV L+ N +N D+ R ++ + +K + +
Sbjct: 71 FALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTD 109
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 36/55 (65%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245
F +PVD E PDY ++I+ PMDFGTVR L G Y + +F KD+ LI SNA Y
Sbjct: 31 FRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 190 VFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249
VF + +ELP+Y E+I P+DF ++ ++ N Y +L EKDV L+C NA +N
Sbjct: 38 VFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEG 97
Query: 250 TIYFRQARSIHELAKKNFENLRQ---DSDDNEPE 280
++ + + + + F ++RQ DD+E E
Sbjct: 98 SLIYEDSIVLQSV----FTSVRQKIEKEDDSEGE 127
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 167 TPLPDKKL--LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGA 224
TPL +K L +L LQ F EPVDP + PDY VI+ PMD T+ ++
Sbjct: 67 TPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRY 126
Query: 225 YATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 256
Y L +F D+ I N YN D+ +++ A
Sbjct: 127 YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCA 158
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 190 VFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249
VF + +ELP+Y E+I P+DF ++ ++ N Y +L EKDV L+C NA +N
Sbjct: 39 VFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEG 98
Query: 250 TIYFRQARSIHELAKKNFENLRQ 272
++ + + + + F ++RQ
Sbjct: 99 SLIYEDSIVLQSV----FTSVRQ 117
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 171 DKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQ 230
D L IL ++ + F PV+ + +P Y +VI+ PMDF T+R KL++G Y LE
Sbjct: 14 DLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLET 73
Query: 231 FEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFEN 269
F DV L+ N +N D+ R ++ + +K + +
Sbjct: 74 FALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTD 112
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 167 TPLPDKKL--LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGA 224
TPL +K L +L LQ F EPVDP + PDY VI+ PMD T+ ++
Sbjct: 8 TPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRY 67
Query: 225 YATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 256
Y L +F D+ I N YN D+ +++ A
Sbjct: 68 YEKLTEFVADMTAIFDNCRYYNPSDSPFYQCA 99
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 190 VFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249
VF + +ELP+Y E+I P+DF ++ ++ N Y +L EKDV L+C NA +N
Sbjct: 34 VFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEG 93
Query: 250 TIYFRQARSIHELAKKNFENLRQ 272
++ + + + + F ++RQ
Sbjct: 94 SLIYEDSIVLQSV----FTSVRQ 112
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 167 TPLPDKKL--LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGA 224
TPL +K L +L LQ F EPVDP + PDY VI+ PMD T+ ++
Sbjct: 15 TPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRY 74
Query: 225 YATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 256
Y L +F D+ I N YN D+ +++ A
Sbjct: 75 YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCA 106
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 167 TPLPDKKL--LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGA 224
TPL +K L +L LQ F EPVDP + PDY VI+ PMD T+ ++
Sbjct: 8 TPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRY 67
Query: 225 YATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 256
Y L +F D+ I N YN D+ +++ A
Sbjct: 68 YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCA 99
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250
F EPV E PDY EVI P+D T+ +L + Y T + F D+ + +N +YN PD+
Sbjct: 24 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 83
Query: 251 IYFRQARSIHEL 262
Y R A ++ +
Sbjct: 84 EYCRCASALEKF 95
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 165 PSTPLPDKKLLLFILDRLQKKDTYG-----VFSEPVDPEELPDYCEVIEHPMDFGTVRNK 219
P+ P K++ I + KD+ G VF + +ELP+Y E+I P+DF ++ +
Sbjct: 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKER 68
Query: 220 LANGAYATLEQFEKDVFLICSNAMQYN 246
+ N Y +L EKDV L+C NA +N
Sbjct: 69 IRNHKYRSLGDLEKDVMLLCHNAQTFN 95
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250
F EPV E PDY EVI P+D T+ +L + Y T + F D+ + +N +YN PD+
Sbjct: 28 FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDS 87
Query: 251 IYFRQARSIHEL 262
Y R A ++ +
Sbjct: 88 EYCRCASALEKF 99
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246
F +PVD E PDY ++I+ PMDF TVR L G Y + + KDV LI SN+ Y
Sbjct: 42 FRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 191 FSEPVDPEELP--DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F PVD + L +Y +V+++PMD GT++ K+ N Y +F DV L+ N +YN P
Sbjct: 38 FYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPP 97
Query: 249 DTIYFRQARSIHELAKKNFENL 270
D AR++ ++ + +F +
Sbjct: 98 DHEVVAMARTLQDVFELHFAKI 119
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250
F E VD +ELP+Y E++ PM V+ L G Y+ + F D+ L+ NA +N P
Sbjct: 234 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 293
Query: 251 IYFRQARSI 259
+ ++ A ++
Sbjct: 294 LIYKDATTL 302
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 199 ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 258
+ PDY +I+ P+D T+ ++ NG+Y ++ KD+ L+ NA YN P + F+ A S
Sbjct: 41 QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 100
Query: 259 IHEL 262
I ++
Sbjct: 101 IKKI 104
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 199 ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 258
+ PDY +I+ P+D T+ ++ NG+Y ++ KD+ L+ NA YN P + F+ A S
Sbjct: 43 QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 102
Query: 259 IHEL 262
I ++
Sbjct: 103 IKKI 106
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 178 ILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFL 237
IL +++ + F EPV E P Y EVI PMD T+ +L N Y + + F D+
Sbjct: 23 ILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQR 82
Query: 238 ICSNAMQYNAPDTIYFRQARSIHEL 262
+ +N +YN P++ Y++ A + +
Sbjct: 83 VFTNCKEYNPPESEYYKCANILEKF 107
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 199 ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 258
+ PDY +I+ P+D T+ ++ NG+Y ++ KD+ L+ NA YN P + F+ A S
Sbjct: 44 QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 103
Query: 259 IHEL 262
I ++
Sbjct: 104 IKKI 107
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 178 ILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFL 237
IL +++ + F EPV E P Y EVI PMD T+ +L N Y + + F D+
Sbjct: 21 ILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQR 80
Query: 238 ICSNAMQYNAPDTIYFRQARSIHEL 262
+ +N +YN P++ Y++ A + +
Sbjct: 81 VFTNCKEYNPPESEYYKCANILEKF 105
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250
F E VD +ELP+Y E++ PM V+ L G Y+ + F D+ L+ NA +N P
Sbjct: 219 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 278
Query: 251 IYFRQARSI 259
+ ++ A ++
Sbjct: 279 LIYKDATTL 287
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 167 TPLPDKKL--LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGA 224
TPL +K L +L LQ F EPVDP + PDY VI+ P D T ++
Sbjct: 67 TPLTEKDYEGLKRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRY 126
Query: 225 YATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 256
Y L +F D I N YN D+ +++ A
Sbjct: 127 YEKLTEFVADXTKIFDNCRYYNPSDSPFYQCA 158
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 178 ILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFL 237
+LD ++ F EPVD P+Y ++I+ PMD ++ KL G Y T E+F D+
Sbjct: 24 VLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKT 83
Query: 238 ICSNAMQYNAPDTIYFRQARSI 259
+ N +YN + Y + + ++
Sbjct: 84 MFRNCRKYNGESSEYTKMSDNL 105
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 139 DCEKGEKTISGANPTNNNQGAQLE-LGPSTPLPDKK---LLLFILDRLQKKDTYGVFSEP 194
D K E P++N++ + E L TP+ +K LLLF L + F +P
Sbjct: 50 DLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLF----LYCHEMSLAFQDP 105
Query: 195 VDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNAPDT 250
V P +PDY ++I++PMD T++ +L Y+ E F D LI N ++N PD+
Sbjct: 106 V-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDS 162
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 199 ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 258
ELPDY I+ PMD +R+ + Y ++ +D ++ +NA YN P+++ ++ A
Sbjct: 50 ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALV 109
Query: 259 IHELAKKNFENLRQD 273
+H++ + +L D
Sbjct: 110 LHKVLLETRRDLEGD 124
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250
F E VD +ELP+Y E++ P V+ L G Y+ + F D L+ NA +N P
Sbjct: 178 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 237
Query: 251 IYFRQARSI 259
+ ++ A ++
Sbjct: 238 LIYKDATTL 246
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250
F E VD +ELP+Y E++ P V+ L G Y+ + F D L+ NA +N P
Sbjct: 184 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 243
Query: 251 IYFRQARSI 259
+ ++ A ++
Sbjct: 244 LIYKDATTL 252
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 178 ILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDV 235
+L L K F PVD +LPDY +I++PMD T++ +L N YA + +D
Sbjct: 21 VLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDF 80
Query: 236 FLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD 273
+ SN YN P A+++ +L + + Q+
Sbjct: 81 NTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQE 118
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 201 PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 260
PDY + I+ P+ +R KL N Y TL+ E D+ L+ NA +YN P++ +++ +
Sbjct: 54 PDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQ 113
Query: 261 ELAK 264
++ +
Sbjct: 114 QVMQ 117
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 182 LQKKDTYGVFSEPVDP--EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLIC 239
L K + +F + VD + PDY +VI++P F ++ KL G YA +F KDV LI
Sbjct: 33 LSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDVQLIF 92
Query: 240 SNAMQYNAPDTI 251
N YN +++
Sbjct: 93 DNCSLYNTSNSV 104
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 199 ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 258
ELPDY I+ PMD +R+ + Y ++ +D ++ +NA YN P+++ ++ A
Sbjct: 50 ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALV 109
Query: 259 IHEL 262
+H++
Sbjct: 110 LHKV 113
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 165 PSTPLPDKK---------LLLFILDRLQKKDTYGVFSEPVDPEEL--PDYCEVIEHPMDF 213
P T P+K LL +L L K F +PVD +L PDY ++I+ PMD
Sbjct: 27 PETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDM 86
Query: 214 GTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 262
GT++ +L N Y ++ +D + +N YN P A ++ +L
Sbjct: 87 GTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 135
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY ++I+ PMD GT++ +L N Y + +D + +N YN P
Sbjct: 53 FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKP 112
Query: 249 DTIYFRQARSIHELAKKNFENLRQDSDD 276
A+++ ++ + ++ Q+ +
Sbjct: 113 TDDIVLMAQTLEKIFLQKVASMPQEEQE 140
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY ++I+ PMD GT++ +L N Y + +D + +N YN P
Sbjct: 53 FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKP 112
Query: 249 DTIYFRQARSIHELAKKNFENLRQDSDD 276
A+++ ++ + ++ Q+ +
Sbjct: 113 TDDIVLMAQTLEKIFLQKVASMPQEEQE 140
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 174 LLLFILDRLQKKDTYGVFSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQF 231
LL +L L K F +PVD +L PDY ++I+ PMD GT++ +L N Y ++
Sbjct: 29 LLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQEC 88
Query: 232 EKDVFLICSNAMQYNAPDTIYFRQARSIHEL 262
+D + +N YN P A ++ +L
Sbjct: 89 IQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 119
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 174 LLLFILDRLQKKDTYGVFSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQF 231
LL +L L K F +PVD +L PDY ++I+ PMD GT++ +L N Y ++
Sbjct: 25 LLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQEC 84
Query: 232 EKDVFLICSNAMQYNAPDTIYFRQARSIHEL 262
+D + +N YN P A ++ +L
Sbjct: 85 IQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 115
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 174 LLLFILDRLQKKDTYGVFSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQF 231
LL +L L K F +PVD +L PDY ++I+ PMD GT++ +L N Y ++
Sbjct: 25 LLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQEC 84
Query: 232 EKDVFLICSNAMQYNAPDTIYFRQARSIHEL 262
+D + +N YN P A ++ +L
Sbjct: 85 IQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 115
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY ++I++PMD GT++ +L N Y + + +D + +N YN P
Sbjct: 40 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 99
Query: 249 --DTIYFRQA 256
D + QA
Sbjct: 100 TDDIVLMAQA 109
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY ++I++PMD GT++ +L N Y + + +D + +N YN P
Sbjct: 38 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 97
Query: 249 --DTIYFRQA 256
D + QA
Sbjct: 98 TDDIVLMAQA 107
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLE 229
++LLLF L + F +PV P +PDY ++I++PMD T++ +L Y+ E
Sbjct: 26 ERLLLF----LYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPE 80
Query: 230 QFEKDVFLICSNAMQYNAPDT 250
F D LI N ++N PD+
Sbjct: 81 DFVADFRLIFQNCAEFNEPDS 101
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY ++I++PMD GT++ +L N Y + + +D + +N YN P
Sbjct: 42 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 101
Query: 249 --DTIYFRQA 256
D + QA
Sbjct: 102 TDDIVLMAQA 111
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY +I+ PMD T++ +L N Y + +D + SN YN
Sbjct: 35 FQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKT 94
Query: 249 DTIYFRQARSIHELAKKNFENLRQD 273
A+++ +L + + Q+
Sbjct: 95 GDDIVVMAQALEKLFMQKLSQMPQE 119
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY ++I+ P D GT++ +L N Y + +D +N YN P
Sbjct: 27 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKP 86
Query: 249 DTIYFRQARSIHEL 262
A+++ ++
Sbjct: 87 TDDIVLXAQTLEKI 100
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 191 FSEPVDPEEL--PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248
F +PVD +L PDY ++I+ P D GT++ +L N Y + +D +N YN P
Sbjct: 33 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKP 92
Query: 249 DTIYFRQARSIHEL 262
A+++ ++
Sbjct: 93 TDDIVLXAQTLEKI 106
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 191 FSEPVDPEELPDYCEVIEHPMDFGTVRNKLA---NGAYATLEQFEKDVFLICSNAMQYN 246
F EPV P +P+Y ++I+ PMD TV+ KL + Y + F DV LI N ++N
Sbjct: 102 FQEPV-PASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFN 159
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 198 EELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQAR 257
++ PDY ++I PMD + + + N YA E +D+ L+ NA YN + + A
Sbjct: 59 KDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAH 118
Query: 258 SIHELAKKNFENLRQDSDDNE 278
+ +L K+ + L DD++
Sbjct: 119 ILEKLLKEKRKELGPLPDDDD 139
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 201 PDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 260
PDY EV+ P+D ++ KL Y + D L+ +NA Y PD+ ++ A +
Sbjct: 42 PDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLW 101
Query: 261 EL 262
+L
Sbjct: 102 DL 103
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 202 DYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245
DY E I P+D T+ ++ G Y T+E F+ D+ + NA +Y
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 502 LSSASTHSTIELKGDKLTERPEAED-------SSEKPGPSTQSSLDGH 542
+S+ ++HS L GD + ED + ++P P+ S+LDGH
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH 56
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 502 LSSASTHSTIELKGDKLTERPEAED-------SSEKPGPSTQSSLDGH 542
+S+ ++HS L GD + ED + ++P P+ S+LDGH
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH 56
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 502 LSSASTHSTIELKGDKLTERPEAED-------SSEKPGPSTQSSLDGH 542
+S+ ++HS L GD + ED + ++P P+ S+LDGH
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH 58
>pdb|2GJU|A Chain A, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|B Chain B, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|C Chain C, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|D Chain D, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
Length = 252
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 172 KKLLLFILDRLQKKDTYGVFSEPVDP---EELPD----YCEVIEHPM 211
+ L ++++D++ K + +GV+ PV+P E LPD Y E I P+
Sbjct: 119 RDLPIYLVDKIGKNEIFGVYGSPVNPFDGEILPDQPTSYYEAIMRPV 165
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 502 LSSASTHSTIELKGDKLTERPEAED-------SSEKPGPSTQSSLDGH 542
+S+ ++HS L GD + ED + ++P P+ S+LDGH
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH 68
>pdb|1OKJ|A Chain A, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|B Chain B, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|C Chain C, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|D Chain D, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
Length = 251
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 420 LMTV--GLHSEHGYTRSLARFAANLGPVAW----------------------KIAARRIE 455
LMT+ G ++G TR LA A +G V W +I R++
Sbjct: 115 LMTMAQGAWRKNGATRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQ 174
Query: 456 RCLPAGVRFGPGWVVENDLAPQRPLLLSSATVGLPSS 492
+ V G GW DL + L+L V LP++
Sbjct: 175 QLSGEWVTVGTGWQAWPDLGKESGLVLRDGEVLLPAA 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,330,069
Number of Sequences: 62578
Number of extensions: 896463
Number of successful extensions: 1624
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1543
Number of HSP's gapped (non-prelim): 87
length of query: 741
length of database: 14,973,337
effective HSP length: 106
effective length of query: 635
effective length of database: 8,340,069
effective search space: 5295943815
effective search space used: 5295943815
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)