Query 004628
Match_columns 741
No_of_seqs 382 out of 1325
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05497 Bromo_Brdt_I_like Brom 99.9 9.4E-25 2E-29 200.3 11.4 101 170-270 5-107 (107)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 9.5E-25 2.1E-29 204.0 11.2 106 169-274 4-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1.6E-24 3.4E-29 199.1 12.0 103 169-271 2-107 (108)
4 cd05505 Bromo_WSTF_like Bromod 99.9 1.1E-24 2.3E-29 196.8 10.1 95 172-266 2-96 (97)
5 cd05507 Bromo_brd8_like Bromod 99.9 2E-24 4.3E-29 197.0 10.8 101 170-270 3-103 (104)
6 cd05508 Bromo_RACK7 Bromodomai 99.9 3.1E-24 6.7E-29 194.6 10.3 96 170-266 3-98 (99)
7 cd05504 Bromo_Acf1_like Bromod 99.9 5.7E-24 1.2E-28 197.5 11.9 104 168-271 10-113 (115)
8 cd05509 Bromo_gcn5_like Bromod 99.9 4.2E-24 9.1E-29 192.9 10.7 101 170-270 1-101 (101)
9 cd05503 Bromo_BAZ2A_B_like Bro 99.9 4.4E-24 9.6E-29 192.2 10.0 96 172-267 2-97 (97)
10 cd05510 Bromo_SPT7_like Bromod 99.9 7.8E-24 1.7E-28 195.9 11.1 104 169-272 6-111 (112)
11 cd05513 Bromo_brd7_like Bromod 99.9 7.3E-24 1.6E-28 191.8 9.8 97 170-266 1-97 (98)
12 cd05502 Bromo_tif1_like Bromod 99.9 2.1E-23 4.6E-28 191.4 11.8 102 170-272 4-108 (109)
13 cd05512 Bromo_brd1_like Bromod 99.9 8.6E-24 1.9E-28 191.2 8.9 95 170-264 1-95 (98)
14 cd05516 Bromo_SNF2L2 Bromodoma 99.9 2.9E-23 6.3E-28 190.3 10.2 100 171-270 2-107 (107)
15 cd05511 Bromo_TFIID Bromodomai 99.9 4.4E-23 9.6E-28 190.6 10.6 103 172-274 2-104 (112)
16 cd05506 Bromo_plant1 Bromodoma 99.9 4.4E-23 9.6E-28 185.5 10.2 96 172-267 2-99 (99)
17 KOG1474 Transcription initiati 99.9 3.8E-23 8.3E-28 239.0 11.6 111 167-277 219-331 (640)
18 cd05528 Bromo_AAA Bromodomain; 99.9 7.7E-23 1.7E-27 189.2 11.3 103 170-272 3-109 (112)
19 cd05499 Bromo_BDF1_2_II Bromod 99.9 5.8E-23 1.3E-27 186.1 10.2 96 172-267 2-102 (102)
20 KOG0955 PHD finger protein BR1 99.9 7.2E-23 1.6E-27 242.9 13.4 293 167-477 562-871 (1051)
21 cd05498 Bromo_Brdt_II_like Bro 99.9 8.8E-23 1.9E-27 184.6 10.2 96 172-267 2-102 (102)
22 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.3E-22 2.7E-27 184.5 10.6 98 170-267 4-103 (103)
23 cd05501 Bromo_SP100C_like Brom 99.9 4.1E-22 8.9E-27 181.7 11.8 97 172-271 4-100 (102)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 2.5E-22 5.4E-27 182.6 9.6 96 172-267 2-103 (103)
25 cd05524 Bromo_polybromo_I Brom 99.9 3.6E-22 7.8E-27 184.9 10.5 102 172-273 4-111 (113)
26 cd05515 Bromo_polybromo_V Brom 99.9 5.1E-22 1.1E-26 181.5 9.7 97 172-268 2-104 (105)
27 cd05525 Bromo_ASH1 Bromodomain 99.9 1.1E-21 2.4E-26 179.9 10.4 96 171-266 3-104 (106)
28 smart00297 BROMO bromo domain. 99.9 1.4E-21 2.9E-26 176.1 10.8 102 169-270 6-107 (107)
29 cd05517 Bromo_polybromo_II Bro 99.9 9.3E-22 2E-26 179.4 9.7 94 172-265 2-101 (103)
30 cd05520 Bromo_polybromo_III Br 99.9 1E-21 2.2E-26 179.1 9.4 92 175-266 5-102 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 1.2E-21 2.6E-26 178.8 9.4 93 173-265 3-101 (103)
32 cd05529 Bromo_WDR9_I_like Brom 99.9 3.4E-21 7.5E-26 182.0 12.2 102 168-269 22-127 (128)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.1E-20 2.5E-25 172.4 9.8 96 171-266 2-103 (104)
34 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 2.7E-20 5.7E-25 170.9 10.0 96 171-268 2-103 (106)
35 cd04369 Bromodomain Bromodomai 99.8 2.8E-20 6.2E-25 161.9 8.9 96 172-267 2-99 (99)
36 PF00439 Bromodomain: Bromodom 99.8 2.4E-20 5.3E-25 161.1 8.3 84 175-258 1-84 (84)
37 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.7E-19 3.6E-24 166.5 10.8 99 173-271 3-107 (109)
38 cd05526 Bromo_polybromo_VI Bro 99.7 1.3E-17 2.8E-22 154.2 10.4 100 171-272 4-109 (110)
39 COG5076 Transcription factor i 99.7 1E-16 2.2E-21 175.0 10.0 106 170-275 142-253 (371)
40 KOG1245 Chromatin remodeling c 99.6 8.1E-16 1.8E-20 189.3 7.4 99 172-271 1302-1401(1404)
41 KOG0386 Chromatin remodeling c 99.4 5.7E-13 1.2E-17 156.3 8.3 102 173-274 1027-1134(1157)
42 KOG1472 Histone acetyltransfer 99.4 4.5E-13 9.7E-18 155.1 6.5 102 170-271 606-707 (720)
43 cd05494 Bromodomain_1 Bromodom 99.0 2.2E-10 4.7E-15 106.9 3.8 77 172-248 5-90 (114)
44 KOG1827 Chromatin remodeling c 98.9 1.5E-09 3.2E-14 124.6 8.6 104 165-268 47-156 (629)
45 KOG0008 Transcription initiati 98.9 1.5E-09 3.2E-14 130.7 5.9 95 176-270 1388-1482(1563)
46 cd05491 Bromo_TBP7_like Bromod 98.8 2.1E-09 4.6E-14 100.7 3.9 41 209-249 63-103 (119)
47 KOG0008 Transcription initiati 98.6 6E-08 1.3E-12 117.3 6.8 98 171-268 1262-1359(1563)
48 KOG1472 Histone acetyltransfer 98.4 2.2E-07 4.8E-12 108.6 4.6 70 184-253 300-369 (720)
49 KOG1828 IRF-2-binding protein 98.3 8.2E-08 1.8E-12 104.5 -0.8 99 170-268 19-117 (418)
50 KOG1828 IRF-2-binding protein 98.2 7.4E-07 1.6E-11 97.3 3.9 90 171-261 209-298 (418)
51 KOG1474 Transcription initiati 98.2 4.6E-07 9.9E-12 106.3 0.9 97 181-277 3-101 (640)
52 PF12024 DUF3512: Domain of un 97.6 2.8E-05 6.1E-10 81.3 2.2 83 375-457 88-184 (245)
53 COG5076 Transcription factor i 96.6 0.0006 1.3E-08 75.3 0.6 92 181-272 274-365 (371)
54 cd05493 Bromo_ALL-1 Bromodomai 95.8 0.015 3.1E-07 56.3 5.4 69 210-278 59-127 (131)
55 KOG0644 Uncharacterized conser 87.5 0.46 9.9E-06 57.4 3.4 61 204-264 1047-1107(1113)
56 KOG0732 AAA+-type ATPase conta 81.6 0.97 2.1E-05 56.5 2.8 63 187-249 532-601 (1080)
57 KOG1827 Chromatin remodeling c 68.5 1.1 2.4E-05 53.1 -1.3 75 188-262 213-287 (629)
58 KOG0066 eIF2-interacting prote 62.7 6.2 0.00013 45.6 3.1 23 203-225 293-315 (807)
59 KOG0644 Uncharacterized conser 57.1 5.2 0.00011 48.9 1.4 85 172-266 76-190 (1113)
60 PF14619 SnAC: Snf2-ATP coupli 31.8 20 0.00044 31.4 0.8 19 70-88 53-71 (74)
61 PF14372 DUF4413: Domain of un 23.1 2.5E+02 0.0053 25.8 6.2 48 223-270 4-51 (101)
62 TIGR02606 antidote_CC2985 puta 23.0 1.2E+02 0.0026 26.3 3.8 27 214-240 12-38 (69)
No 1
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=9.4e-25 Score=200.29 Aligned_cols=101 Identities=29% Similarity=0.466 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCC--CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~ 247 (741)
.++-++..||+.|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34567789999999999999999999987 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 004628 248 PDTIYFRQARSIHELAKKNFENL 270 (741)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL 270 (741)
++|.|+.+|..|++.|++.++++
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998864
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=9.5e-25 Score=203.98 Aligned_cols=106 Identities=28% Similarity=0.433 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCC
Q 004628 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (741)
Q Consensus 169 ~p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~ 248 (741)
..|++.|..||+.|++++.+++|+.||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 004628 249 -DTIYFRQARSIHELAKKNFENLRQDS 274 (741)
Q Consensus 249 -dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (741)
++.||.+|..|+..|++.+.+|....
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999987643
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.6e-24 Score=199.08 Aligned_cols=103 Identities=29% Similarity=0.551 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHHHhC-CCCCCCCCCCCCC--CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhccc
Q 004628 169 LPDKKLLLFILDRLQKK-DTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (741)
Q Consensus 169 ~p~kklL~~IL~~L~k~-~~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~Y 245 (741)
-.+++.|..|++.|+++ +.+++|.+||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999 9999999999988 59999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhh
Q 004628 246 NAPDTIYFRQARSIHELAKKNFENLR 271 (741)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (741)
|+++|.+|++|..|++.|++.++.+.
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.1e-24 Score=196.82 Aligned_cols=95 Identities=28% Similarity=0.399 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCH
Q 004628 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (741)
Q Consensus 172 kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~ 251 (741)
.+.|..||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||++++.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004628 252 YFRQARSIHELAKKN 266 (741)
Q Consensus 252 Vyk~A~~Le~~fek~ 266 (741)
|+.+|..|++.|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 5
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2e-24 Score=196.98 Aligned_cols=101 Identities=28% Similarity=0.501 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
.|++.|..|++.|.+++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||.|||+||++||+++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 004628 250 TIYFRQARSIHELAKKNFENL 270 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL 270 (741)
+.||.+|..|++.|.+.++.+
T Consensus 83 s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 83 HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999888754
No 6
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.1e-24 Score=194.59 Aligned_cols=96 Identities=31% Similarity=0.525 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
.+..+|+.+++.|+ ++.+++|.+||++..+||||.+|++||||+||++||+++.|.++++|.+||+|||.||++||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004628 250 TIYFRQARSIHELAKKN 266 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~ 266 (741)
|.++.+|+.|.+.|+..
T Consensus 82 s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 82 HKLTQAAKAIVKICEQE 98 (99)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998864
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.7e-24 Score=197.46 Aligned_cols=104 Identities=30% Similarity=0.481 Sum_probs=99.9
Q ss_pred ChhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCC
Q 004628 168 PLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (741)
Q Consensus 168 p~p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~ 247 (741)
-......|..||+.|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||+
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~ 89 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNP 89 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhh
Q 004628 248 PDTIYFRQARSIHELAKKNFENLR 271 (741)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL~ 271 (741)
++|.+|++|..|+..|++.++++.
T Consensus 90 ~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 90 EHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.2e-24 Score=192.93 Aligned_cols=101 Identities=43% Similarity=0.664 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
|....|..||+.|++++.+++|..||++..+|+||++|++||||.||++||+++.|.++++|..||+|||+||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 004628 250 TIYFRQARSIHELAKKNFENL 270 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL 270 (741)
+.++.+|..|++.|++.++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999875
No 9
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=4.4e-24 Score=192.21 Aligned_cols=96 Identities=34% Similarity=0.585 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCH
Q 004628 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (741)
Q Consensus 172 kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~ 251 (741)
...|+.||+.|++++.+++|+.||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004628 252 YFRQARSIHELAKKNF 267 (741)
Q Consensus 252 Vyk~A~~Le~~fek~~ 267 (741)
++++|..|++.|++.|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999865
No 10
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.8e-24 Score=195.88 Aligned_cols=104 Identities=28% Similarity=0.390 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCC
Q 004628 169 LPDKKLLLFILDRLQKK-DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (741)
Q Consensus 169 ~p~kklL~~IL~~L~k~-~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~ 247 (741)
.++...|..||+.|+++ +.+++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||+||+.||+
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35788999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHhhhc
Q 004628 248 PDT-IYFRQARSIHELAKKNFENLRQ 272 (741)
Q Consensus 248 ~dS-~Vyk~A~~Le~~fek~~eeL~~ 272 (741)
+++ .++++|..|++.|++.+..|+.
T Consensus 86 ~~s~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 86 DPSHPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 765 6889999999999999998853
No 11
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.3e-24 Score=191.83 Aligned_cols=97 Identities=41% Similarity=0.754 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
|+++.|..||+.|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|++||+|||.||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004628 250 TIYFRQARSIHELAKKN 266 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~ 266 (741)
|.+|++|..|.+...+.
T Consensus 81 s~~~~~A~~L~~~~~~~ 97 (98)
T cd05513 81 TIYYKAAKKLLHSGMKI 97 (98)
T ss_pred CHHHHHHHHHHHhhhhh
Confidence 99999999998766543
No 12
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=2.1e-23 Score=191.37 Aligned_cols=102 Identities=25% Similarity=0.449 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcC---CCCCCHHHHHHHHHHHHHhhcccC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~---g~Y~SleeF~~DV~LMfsNA~~YN 246 (741)
..++.|..||..|++++.+++|.+||++ .+|+||++|++||||+||++||++ +.|.++++|.+||+|||+||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999 899999999999999999999998 599999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhc
Q 004628 247 APDTIYFRQARSIHELAKKNFENLRQ 272 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (741)
+++|.++.+|..|++.|++.|.++..
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999998754
No 13
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8.6e-24 Score=191.17 Aligned_cols=95 Identities=49% Similarity=0.770 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
|+..+|+.+|+.|+.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004628 250 TIYFRQARSIHELAK 264 (741)
Q Consensus 250 S~Vyk~A~~Le~~fe 264 (741)
+.+|++|..|++...
T Consensus 81 s~~~~~A~~l~~~~~ 95 (98)
T cd05512 81 TIFYRAAVRLRDQGG 95 (98)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987654
No 14
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.9e-23 Score=190.30 Aligned_cols=100 Identities=29% Similarity=0.534 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhCCC------CCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcc
Q 004628 171 DKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 171 ~kklL~~IL~~L~k~~~------s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~ 244 (741)
+.+.|..||+.|.++.+ +++|.+||+...+||||++|++||||++|++||+++.|.++++|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778999999998876 789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 004628 245 YNAPDTIYFRQARSIHELAKKNFENL 270 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL 270 (741)
||+++|.||.+|..|++.|.+.++++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 15
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.4e-23 Score=190.62 Aligned_cols=103 Identities=31% Similarity=0.577 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCH
Q 004628 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (741)
Q Consensus 172 kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~ 251 (741)
..+|+.|++.|++++.+++|..||++..+|+||++|++||||++|++||+++.|.++++|.+||+|||+||+.||+++|.
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 004628 252 YFRQARSIHELAKKNFENLRQDS 274 (741)
Q Consensus 252 Vyk~A~~Le~~fek~~eeL~~~~ 274 (741)
++.+|..|...|++.++++....
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999987643
No 16
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.4e-23 Score=185.50 Aligned_cols=96 Identities=38% Similarity=0.595 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCC--CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 172 KKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 172 kklL~~IL~~L~k~~~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
.+.|..||+.|++++.+++|..||++. .+|+||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 567999999999999999999999977 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004628 250 TIYFRQARSIHELAKKNF 267 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~~ 267 (741)
|.++++|..|+..|++.|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 17
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.89 E-value=3.8e-23 Score=239.05 Aligned_cols=111 Identities=34% Similarity=0.588 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHHHHhCCCCCCCCCCCCCCC--CCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcc
Q 004628 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 167 tp~p~kklL~~IL~~L~k~~~s~~F~ePVd~~e--~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~ 244 (741)
......+.|..||..|++|+++|+|..|||+.. +||||+||++||||+||++||.++.|.++.+|.+||+|||.|||+
T Consensus 219 ~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~ 298 (640)
T KOG1474|consen 219 LTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMT 298 (640)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHh
Confidence 445778999999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004628 245 YNAPDTIYFRQARSIHELAKKNFENLRQDSDDN 277 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~e 277 (741)
||.++++||.+|+.|+++|+..|..+....+..
T Consensus 299 YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~ 331 (640)
T KOG1474|consen 299 YNPEGSDVYAMAKKLQEVFEERWASMPLEIEES 331 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999988866443
No 18
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=7.7e-23 Score=189.21 Aligned_cols=103 Identities=33% Similarity=0.539 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
.++.+|+.|++.|+.++.+++|.+||++.++||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhhhc
Q 004628 250 ----TIYFRQARSIHELAKKNFENLRQ 272 (741)
Q Consensus 250 ----S~Vyk~A~~Le~~fek~~eeL~~ 272 (741)
+.|+.+|..|++.|.+.++++..
T Consensus 83 s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 83 DPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999987643
No 19
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=5.8e-23 Score=186.14 Aligned_cols=96 Identities=33% Similarity=0.587 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhC---CCCCCCCCCCCCC--CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccC
Q 004628 172 KKLLLFILDRLQKK---DTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 172 kklL~~IL~~L~k~---~~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN 246 (741)
.+.|..||+.|+++ +.+++|++||++. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46799999999984 5689999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004628 247 APDTIYFRQARSIHELAKKNF 267 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~ 267 (741)
+++|.++.+|..|++.|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999865
No 20
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.88 E-value=7.2e-23 Score=242.90 Aligned_cols=293 Identities=32% Similarity=0.386 Sum_probs=208.5
Q ss_pred CChhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccC
Q 004628 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 167 tp~p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN 246 (741)
...+++++|+.+++.|++.+..++|..|||+.++|||+++|++||||.+|+.+++.+.|.++++|++|+.||+.||+.||
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC-ccc--------ccccCCCCCCCCCCCCCCCCcccccCCCCCCccccc
Q 004628 247 APDTIYFRQARSIHELAKKNFENLRQDSDDNE-PET--------KVVRRGRPPTKNFKKPLGRPSLERARSDFSSDVTLA 317 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~eE-pep--------k~~rr~Rpp~k~~Kk~l~~~s~~~~~s~~Ss~atlA 317 (741)
..++.+|++|..+++.....|.+.+.+.+.+. .+. .+....++.......+.............+...-++
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~e~~~~~~~e~~~~ 721 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPYRPNLWAPEEPQVDLETFINLSKEHDLK 721 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCCccccccccccccccccccccChhhhhc
Confidence 99999999999999999999999988765543 111 122222333222222222221222222222222111
Q ss_pred cCCCCccccccccCCCCCCCCCCCCCCCCcccCCCCCCccccchhhccccccc------cc--cccccccccCCCccccc
Q 004628 318 SGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERND------EV--SLSKGYSMKHGKKQVVL 389 (741)
Q Consensus 318 ~g~e~~~~s~~d~r~~~~~~~~~~~~~~kR~~h~pk~~~~~~~~~~kKl~~el------~f--evl~~l~~K~g~k~~~~ 389 (741)
...+.. .....+..+..+..+. +-+ . . ..+..+++...+- .+ .+.++. .|+|++-
T Consensus 722 ~~~~~~------~~~~a~~~~~~~~~~~-~~~--~---~-~~s~~r~~~~~~~e~~~~~~~p~~~~~~~-~~~~~~~--- 784 (1051)
T KOG0955|consen 722 IPLDKN------EKKKATKLSIPRNRDS-RII--R---K-EKSRLRKCGIVDTETSGSPSIPSGGEKTV-KKDGLNS--- 784 (1051)
T ss_pred cccccc------hhhhhhhccccccccc-ccc--h---h-hHHHHhhccCcCccccCCCCCCCccccch-hcccccc---
Confidence 101100 0010111111111110 000 0 0 0001122221111 11 112334 5566554
Q ss_pred ccccccccccccccccCCCceeccccCcceEEEeccCCchhhHHHHHHHHHhhChHHHHHHHHHHhhhCCCCCCcCCccc
Q 004628 390 DENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWV 469 (741)
Q Consensus 390 de~rR~ty~~~~~~~~~~sv~~~~~~~~k~Lv~vg~~~e~~yarSLarFaa~lGp~~w~iA~~ri~~~lp~g~~fg~gwv 469 (741)
.+++.+|.+..++-.+.++++.+..+.+++-|+++..+.+|+||+++.+++++++||.+|+.+++..++.+..||.||+
T Consensus 785 -~~~~~~~~~~~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~~~~~~~~~~~~~~~~~~~~g~g~~ 863 (1051)
T KOG0955|consen 785 -KNLKMSSDQALSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTASANNLASTSCSVTKATFTGNGVGGD 863 (1051)
T ss_pred -cccccccchhhcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcccccccccccccccCCccCCCCCcc
Confidence 7899999998777889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCC
Q 004628 470 VENDLAPQ 477 (741)
Q Consensus 470 ge~~~~~~ 477 (741)
++.+.-+-
T Consensus 864 ~~tP~~~~ 871 (1051)
T KOG0955|consen 864 VKTPKRPS 871 (1051)
T ss_pred ccCCCCcC
Confidence 77766553
No 21
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=8.8e-23 Score=184.64 Aligned_cols=96 Identities=39% Similarity=0.604 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhC---CCCCCCCCCCCCC--CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccC
Q 004628 172 KKLLLFILDRLQKK---DTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 172 kklL~~IL~~L~k~---~~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN 246 (741)
++.|..||+.|+++ +.+++|++||++. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56799999999999 7899999999987 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 004628 247 APDTIYFRQARSIHELAKKNF 267 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~ 267 (741)
+++|.++.+|..|++.|++.|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 22
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.3e-22 Score=184.53 Aligned_cols=98 Identities=29% Similarity=0.565 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCC--CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~ 247 (741)
...+.|..||+.|++++.+++|..||++. .+||||++|++||||++|++||+++.|.++.+|..||+|||+||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35788999999999999999999999976 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 004628 248 PDTIYFRQARSIHELAKKNF 267 (741)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~ 267 (741)
++|.++.+|..|+..|++.+
T Consensus 84 ~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 23
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.1e-22 Score=181.73 Aligned_cols=97 Identities=26% Similarity=0.391 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCH
Q 004628 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (741)
Q Consensus 172 kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~ 251 (741)
.+.|+.||..|.++..+++|..+ +..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||+++ .
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~ 80 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-D 80 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-H
Confidence 45699999999999999999663 46899999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 004628 252 YFRQARSIHELAKKNFENLR 271 (741)
Q Consensus 252 Vyk~A~~Le~~fek~~eeL~ 271 (741)
++.+|..|++.|++.|+++.
T Consensus 81 ~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 81 FGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.5e-22 Score=182.60 Aligned_cols=96 Identities=27% Similarity=0.496 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhCC------CCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhccc
Q 004628 172 KKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (741)
Q Consensus 172 kklL~~IL~~L~k~~------~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~Y 245 (741)
++.|..|++.|+.+. .+++|.+||+...+||||++|++||||++|++||+.+.|.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999554 57899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 004628 246 NAPDTIYFRQARSIHELAKKNF 267 (741)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~ 267 (741)
|++++.+|.+|..|++.|++.|
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.6e-22 Score=184.90 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhCCC------CCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhccc
Q 004628 172 KKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (741)
Q Consensus 172 kklL~~IL~~L~k~~~------s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~Y 245 (741)
.+.|..|++.|+++.. +.+|..+|+...+||||++|++||||+||++||+++.|.++++|..||.|||+||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5779999999997543 4589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 004628 246 NAPDTIYFRQARSIHELAKKNFENLRQD 273 (741)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (741)
|+++|.+|++|..|++.|++.+.++...
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999988764
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=5.1e-22 Score=181.48 Aligned_cols=97 Identities=24% Similarity=0.483 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCC------CCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhccc
Q 004628 172 KKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (741)
Q Consensus 172 kklL~~IL~~L~k~~------~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~Y 245 (741)
++.|..|++.|..+. .+++|..||+..++||||++|++||||++|++||+++.|.++++|+.||.|||.||+.|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 466888888887654 46799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 004628 246 NAPDTIYFRQARSIHELAKKNFE 268 (741)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~e 268 (741)
|+++|.+|.+|..|++.|.+...
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999987654
No 27
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.1e-21 Score=179.91 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhCCC------CCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcc
Q 004628 171 DKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 171 ~kklL~~IL~~L~k~~~------s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~ 244 (741)
+...|+.||+.|..++. +++|+++|++..+||||++|++||||++|++||+++.|.++++|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45668888888877543 579999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 004628 245 YNAPDTIYFRQARSIHELAKKN 266 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~ 266 (741)
||+++|.+|++|..|++.|++.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999863
No 28
>smart00297 BROMO bromo domain.
Probab=99.86 E-value=1.4e-21 Score=176.07 Aligned_cols=102 Identities=37% Similarity=0.665 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCC
Q 004628 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (741)
Q Consensus 169 ~p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~ 248 (741)
..++.+|..|++.+.+++.+++|..||++..+|+||.+|++||||.+|++||+++.|.++.+|.+||+|||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 004628 249 DTIYFRQARSIHELAKKNFENL 270 (741)
Q Consensus 249 dS~Vyk~A~~Le~~fek~~eeL 270 (741)
++.++.+|..|++.|++.|.++
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999988763
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=9.3e-22 Score=179.44 Aligned_cols=94 Identities=27% Similarity=0.520 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhCCC------CCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhccc
Q 004628 172 KKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (741)
Q Consensus 172 kklL~~IL~~L~k~~~------s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~Y 245 (741)
++.|+.|++.|.++.+ +++|..+|++..+||||++|++||||++|++||+.+.|.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678888888887654 4799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 004628 246 NAPDTIYFRQARSIHELAKK 265 (741)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek 265 (741)
|+++|.||.+|..|++.|+.
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 30
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1e-21 Score=179.14 Aligned_cols=92 Identities=29% Similarity=0.549 Sum_probs=82.9
Q ss_pred HHHHHHHHHhC------CCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCC
Q 004628 175 LLFILDRLQKK------DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (741)
Q Consensus 175 L~~IL~~L~k~------~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~ 248 (741)
|..|++.|+.+ ..+++|.++|+...+||||++|++||||+||++||+++.|.++.+|+.||+|||.||+.||++
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP 84 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34455555443 366799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 004628 249 DTIYFRQARSIHELAKKN 266 (741)
Q Consensus 249 dS~Vyk~A~~Le~~fek~ 266 (741)
+|.+|.+|..|+++|++.
T Consensus 85 ~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 85 NSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999999863
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.2e-21 Score=178.82 Aligned_cols=93 Identities=26% Similarity=0.445 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhC------CCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccC
Q 004628 173 KLLLFILDRLQKK------DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 173 klL~~IL~~L~k~------~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN 246 (741)
+.|..|++.|.+. ..+.+|..+|+...+||||++|++||||+||++||+++.|.++++|+.||.|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3456666666554 4677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 004628 247 APDTIYFRQARSIHELAKK 265 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek 265 (741)
+++|.||.+|..|+++|++
T Consensus 83 ~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 83 EEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 32
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.4e-21 Score=181.97 Aligned_cols=102 Identities=30% Similarity=0.470 Sum_probs=96.2
Q ss_pred ChhHHHHHHHHHHHHH---hCCCCCCCCCCCCCC-CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 004628 168 PLPDKKLLLFILDRLQ---KKDTYGVFSEPVDPE-ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAM 243 (741)
Q Consensus 168 p~p~kklL~~IL~~L~---k~~~s~~F~ePVd~~-e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~ 243 (741)
....+..|..+++.|. +++.+++|..||+.. .+|+||++|++||||+||++||+++.|+++++|+.||+|||.||+
T Consensus 22 ~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 22 RDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3456778889999999 899999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHh
Q 004628 244 QYNAPDTIYFRQARSIHELAKKNFEN 269 (741)
Q Consensus 244 ~YN~~dS~Vyk~A~~Le~~fek~~ee 269 (741)
.||+++|.++.+|..|+..|.+.+..
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999988764
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.1e-20 Score=172.42 Aligned_cols=96 Identities=24% Similarity=0.361 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHhC------CCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcc
Q 004628 171 DKKLLLFILDRLQKK------DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 171 ~kklL~~IL~~L~k~------~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~ 244 (741)
.+..+..|++.|.+. ..+++|..+|+...+||||++|++||||++|++||+++.|.++.+|+.||.|||.||+.
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677888888764 46679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 004628 245 YNAPDTIYFRQARSIHELAKKN 266 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~ 266 (741)
||++++.+|.+|..|+..|++.
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 34
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.7e-20 Score=170.88 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhCCCC------CCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcc
Q 004628 171 DKKLLLFILDRLQKKDTY------GVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 171 ~kklL~~IL~~L~k~~~s------~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~ 244 (741)
+.+.|..|++.|+..+.. .+|..+++...+||||++|++||||++|++||++ |.++++|+.||.|||+||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 356788999988876544 4999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 004628 245 YNAPDTIYFRQARSIHELAKKNFE 268 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~e 268 (741)
||+++|.+|.+|..|++.|.+.+.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999987753
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.82 E-value=2.8e-20 Score=161.89 Aligned_cols=96 Identities=49% Similarity=0.772 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhC--CCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 172 KKLLLFILDRLQKK--DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 172 kklL~~IL~~L~k~--~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
...|..|++.|..+ +.+.+|..||++..+|+||.+|++||||.+|++||+++.|.++.+|.+||+|||.||+.||+.+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45689999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004628 250 TIYFRQARSIHELAKKNF 267 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~~ 267 (741)
+.++.+|..|+..|++.+
T Consensus 82 ~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 82 SPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 36
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.82 E-value=2.4e-20 Score=161.08 Aligned_cols=84 Identities=48% Similarity=0.804 Sum_probs=80.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 004628 175 LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 254 (741)
Q Consensus 175 L~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk 254 (741)
|..||+.|++++.+++|..||+...+|+|+++|++||||.+|++||+++.|.++++|..||++||.||+.||++++.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 004628 255 QARS 258 (741)
Q Consensus 255 ~A~~ 258 (741)
+|++
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=1.7e-19 Score=166.48 Aligned_cols=99 Identities=23% Similarity=0.384 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHh-CCCCCCCCCCCCC---C--CCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccC
Q 004628 173 KLLLFILDRLQK-KDTYGVFSEPVDP---E--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 173 klL~~IL~~L~k-~~~s~~F~ePVd~---~--e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN 246 (741)
.+|..++..++. .+.+.+|..||.. . .+|+||++|++||||+||++||+++.|++++||.+||.|||+||+.||
T Consensus 3 ~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yN 82 (109)
T cd05492 3 CLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFH 82 (109)
T ss_pred hhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457888888887 5667999999952 2 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 004628 247 APDTIYFRQARSIHELAKKNFENLR 271 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (741)
+++|.++.+|+.|.+.+...+.+|.
T Consensus 83 g~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 83 GADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998875
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=1.3e-17 Score=154.17 Aligned_cols=100 Identities=16% Similarity=0.287 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhCCC------CCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcc
Q 004628 171 DKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 171 ~kklL~~IL~~L~k~~~------s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~ 244 (741)
.++++..|++.|+.|.+ +.+|.++++ ..++||.+|++||||++|++||++|.|.++++|..||.|||.||++
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~ 81 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARR 81 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH
Confidence 47788999999998863 458999988 5578889999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 004628 245 YNAPDTIYFRQARSIHELAKKNFENLRQ 272 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (741)
||.++|.||++|..|+.+|.+.-+++..
T Consensus 82 yN~~~S~iy~dA~eLq~~f~~~rd~~~~ 109 (110)
T cd05526 82 LSRTDSEIYEDAVELQQFFIKIRDELCK 109 (110)
T ss_pred hCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988877653
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=1e-16 Score=175.04 Aligned_cols=106 Identities=27% Similarity=0.392 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHh------CCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 004628 170 PDKKLLLFILDRLQK------KDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAM 243 (741)
Q Consensus 170 p~kklL~~IL~~L~k------~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~ 243 (741)
...+.+..|+..+.. .....+|..+|++.++|+||.||+.||||.+|++||+.+.|.++++|..||+|||+||.
T Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~ 221 (371)
T COG5076 142 LLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCK 221 (371)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 334444444444433 34667999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004628 244 QYNAPDTIYFRQARSIHELAKKNFENLRQDSD 275 (741)
Q Consensus 244 ~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e 275 (741)
+||++++.||.+|..|+..|...+.++.....
T Consensus 222 ~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~ 253 (371)
T COG5076 222 LYNGPDSSVYVDAKELEKYFLKLIEEIPEEML 253 (371)
T ss_pred hccCCCcchhhhhHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999998877543
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.60 E-value=8.1e-16 Score=189.28 Aligned_cols=99 Identities=31% Similarity=0.529 Sum_probs=94.2
Q ss_pred HHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCC
Q 004628 172 KKL-LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250 (741)
Q Consensus 172 kkl-L~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS 250 (741)
+.. |..||..|..|+.+|+|.+||++..+||||+||++||||+||+.||..|.|.+.++|..||.|||.||.+||.. +
T Consensus 1302 re~~~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s 1380 (1404)
T KOG1245|consen 1302 RESTCEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-S 1380 (1404)
T ss_pred chhhHHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-h
Confidence 443 89999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 004628 251 IYFRQARSIHELAKKNFENLR 271 (741)
Q Consensus 251 ~Vyk~A~~Le~~fek~~eeL~ 271 (741)
.|++++..|.++|++.|....
T Consensus 1381 ~i~~ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1381 EIGRAGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred hhhhhcchHHHHHHHHHHhhc
Confidence 999999999999999776553
No 41
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=5.7e-13 Score=156.33 Aligned_cols=102 Identities=25% Similarity=0.440 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhCC------CCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccC
Q 004628 173 KLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 173 klL~~IL~~L~k~~------~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN 246 (741)
+.|..|+....++. .+..|...++.+++||||+||++||++..|.++|.++.|.++.+...||.+||.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 55778887777554 456999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 004628 247 APDTIYFRQARSIHELAKKNFENLRQDS 274 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (741)
+++|.||.+|..|+.+|.....++..+.
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~~~ 1134 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISKED 1134 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhccc
Confidence 9999999999999999999999887643
No 42
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.37 E-value=4.5e-13 Score=155.06 Aligned_cols=102 Identities=33% Similarity=0.556 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
.....+..||..|..|..+|+|.+||+..++||||++|++||||.||+.+|.++.|..+..|++|+.+||.||+.||+.+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~ 685 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSD 685 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCcc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh
Q 004628 250 TIYFRQARSIHELAKKNFENLR 271 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL~ 271 (741)
+.+|+.|..|...|...+....
T Consensus 686 ~~y~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 686 TQYYKCAQALEKFFLFKLNELI 707 (720)
T ss_pred chheecccchhhhhcchhhhhh
Confidence 9999999999999998887653
No 43
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.00 E-value=2.2e-10 Score=106.89 Aligned_cols=77 Identities=27% Similarity=0.331 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCC--CCCCcccccccCccCHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHhh
Q 004628 172 KKLLLFILDRLQKKDTYGVFSEPVDP--EELPDYCEVIEHPMDFGTVRNKLANGAY-------ATLEQFEKDVFLICSNA 242 (741)
Q Consensus 172 kklL~~IL~~L~k~~~s~~F~ePVd~--~e~PDYy~IIK~PMDLsTIkkKLk~g~Y-------~SleeF~~DV~LMfsNA 242 (741)
...|..+|..+.+++.+++|..||++ ..+||||++|++||||+||+++|.++.| ..-..+.+++..++.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 45566777777777899999999999 7899999999999999999999999744 33445556666667776
Q ss_pred cccCCC
Q 004628 243 MQYNAP 248 (741)
Q Consensus 243 ~~YN~~ 248 (741)
..||..
T Consensus 85 ~~~~~~ 90 (114)
T cd05494 85 SPSNIY 90 (114)
T ss_pred Cccccc
Confidence 666653
No 44
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.94 E-value=1.5e-09 Score=124.64 Aligned_cols=104 Identities=24% Similarity=0.449 Sum_probs=91.5
Q ss_pred CCCChhHHHHHHHHHHHHHhCC------CCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004628 165 PSTPLPDKKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLI 238 (741)
Q Consensus 165 p~tp~p~kklL~~IL~~L~k~~------~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LM 238 (741)
+....+.+..+..||..+..+. ....|.+.++....|+||.+|..||+|..|++|+..+.|.+++.|+.||+||
T Consensus 47 p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm 126 (629)
T KOG1827|consen 47 PVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLM 126 (629)
T ss_pred cccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3345566666777777776654 3458999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 004628 239 CSNAMQYNAPDTIYFRQARSIHELAKKNFE 268 (741)
Q Consensus 239 fsNA~~YN~~dS~Vyk~A~~Le~~fek~~e 268 (741)
++||+.||..++.+|+++..|+..|.....
T Consensus 127 ~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 127 TENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 999999999999999999999999887654
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.88 E-value=1.5e-09 Score=130.71 Aligned_cols=95 Identities=29% Similarity=0.515 Sum_probs=85.5
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 004628 176 LFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQ 255 (741)
Q Consensus 176 ~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk~ 255 (741)
-.|+.+++.-..+|+|.+||+++.+|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.||..||+.++.+..-
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k 1467 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKK 1467 (1563)
T ss_pred hhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHH
Confidence 34445556667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 004628 256 ARSIHELAKKNFENL 270 (741)
Q Consensus 256 A~~Le~~fek~~eeL 270 (741)
|+++-+++...+.+.
T Consensus 1468 ~~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1468 ARKIGEVGLANLLEY 1482 (1563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988877766544
No 46
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.84 E-value=2.1e-09 Score=100.75 Aligned_cols=41 Identities=34% Similarity=0.461 Sum_probs=39.3
Q ss_pred CccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 209 HPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 209 ~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
.||||+||++||.+|.|.++++|++||+|||.||+.||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999864
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.58 E-value=6e-08 Score=117.29 Aligned_cols=98 Identities=29% Similarity=0.446 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCC
Q 004628 171 DKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250 (741)
Q Consensus 171 ~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS 250 (741)
+.-++..|++++.......+|..||+..+++|||.||+.||||.+|++.|....|.+-++|+.|+.||++|..+||++.+
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004628 251 IYFRQARSIHELAKKNFE 268 (741)
Q Consensus 251 ~Vyk~A~~Le~~fek~~e 268 (741)
.+..++..+...+...|.
T Consensus 1342 ~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999888766655443
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.39 E-value=2.2e-07 Score=108.60 Aligned_cols=70 Identities=33% Similarity=0.599 Sum_probs=65.6
Q ss_pred hCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHH
Q 004628 184 KKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYF 253 (741)
Q Consensus 184 k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vy 253 (741)
.+.++++|.++|++...|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||.+.+...
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~ 369 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGL 369 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhh
Confidence 4788999999999999999999999999999999999999999999999999999999999998764433
No 49
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.32 E-value=8.2e-08 Score=104.53 Aligned_cols=99 Identities=30% Similarity=0.347 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCC
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~d 249 (741)
+.....+.++..+-+++.-..|..||.....|+|.+||+.|||+.||+.|++.+.|.++.+|..|.+||+.||..||-.+
T Consensus 19 p~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 19 PDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred cchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 33556778888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 004628 250 TIYFRQARSIHELAKKNFE 268 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~~e 268 (741)
+.++..|+.|..+....+.
T Consensus 99 Tv~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccccccchhhcchhh
Confidence 9999999999877655544
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.23 E-value=7.4e-07 Score=97.28 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCC
Q 004628 171 DKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250 (741)
Q Consensus 171 ~kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS 250 (741)
...++-....++...+...+|..++....+|.|..+|++|+++.|++.|+.+..|.| -+|..|+.|||.||++||+++.
T Consensus 209 ~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk 287 (418)
T KOG1828|consen 209 GQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSK 287 (418)
T ss_pred cHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcch
Confidence 356667777888888899999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 004628 251 IYFRQARSIHE 261 (741)
Q Consensus 251 ~Vyk~A~~Le~ 261 (741)
.+|+.|+.+..
T Consensus 288 ~yyelank~lh 298 (418)
T KOG1828|consen 288 SYYELANKQLH 298 (418)
T ss_pred HHHHHHHhhhh
Confidence 99999998876
No 51
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.17 E-value=4.6e-07 Score=106.31 Aligned_cols=97 Identities=29% Similarity=0.455 Sum_probs=88.7
Q ss_pred HHHhCCCCCCCCCCCCCCC--CCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 004628 181 RLQKKDTYGVFSEPVDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARS 258 (741)
Q Consensus 181 ~L~k~~~s~~F~ePVd~~e--~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk~A~~ 258 (741)
.+.++..+|.|..||+... +|+||.+|++|||+.+|++++.+..|.+..+..+||..+|.||..||.....|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 3457889999999999764 89999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCC
Q 004628 259 IHELAKKNFENLRQDSDDN 277 (741)
Q Consensus 259 Le~~fek~~eeL~~~~e~e 277 (741)
++..|.+.+..+..+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 83 LEKLFPKKLRSMPSDEEDK 101 (640)
T ss_pred chhhcccccccccccccCC
Confidence 9999999888887766544
No 52
>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 231 to 249 amino acids in length. This domain is found associated with PF00439 from PFAM.
Probab=97.60 E-value=2.8e-05 Score=81.27 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=68.6
Q ss_pred ccccccc--CCCccc-cccccccccccccc---------ccccCCCceeccccCcceEEEeccCCchh--hHHHHHHHHH
Q 004628 375 SKGYSMK--HGKKQV-VLDENRRNTYKQFH---------QSLRESSVLTTFDADKKQLMTVGLHSEHG--YTRSLARFAA 440 (741)
Q Consensus 375 l~~l~~K--~g~k~~-~~de~rR~ty~~~~---------~~~~~~sv~~~~~~~~k~Lv~vg~~~e~~--yarSLarFaa 440 (741)
|..|..| .|-..+ +|.|+||+..++-+ ..-..+|.|+++-.|.-.||+..|+.+++ ||.||.+|++
T Consensus 88 Lg~l~gkL~~G~~tL~gfkEdrrnkvtpv~yl~YGpfsS~AP~yDStfa~lskeesdLiystYGd~t~~~~a~Si~eFv~ 167 (245)
T PF12024_consen 88 LGSLSGKLQSGTNTLQGFKEDRRNKVTPVSYLNYGPFSSFAPTYDSTFANLSKEESDLIYSTYGDETGVQYAFSIQEFVK 167 (245)
T ss_pred HHHhhccccCCcccccccchhhccceeeecccccCccccccccccccccccCcchhhHHHhhcCCccCCchhHHHHHHhh
Confidence 5555555 788888 89999999977621 33456689999999999999999999999 9999999999
Q ss_pred hhChHHHHHHHHHHhhh
Q 004628 441 NLGPVAWKIAARRIERC 457 (741)
Q Consensus 441 ~lGp~~w~iA~~ri~~~ 457 (741)
+||-++.+||-.-|...
T Consensus 168 ~~~~y~~~~vd~LLD~l 184 (245)
T PF12024_consen 168 DCGSYAYKMVDDLLDVL 184 (245)
T ss_pred cCchHHHHHHhhhhhhh
Confidence 99999999887655543
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.61 E-value=0.0006 Score=75.34 Aligned_cols=92 Identities=33% Similarity=0.470 Sum_probs=83.2
Q ss_pred HHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 004628 181 RLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIH 260 (741)
Q Consensus 181 ~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk~A~~Le 260 (741)
....+-..|+|..++.....|+|+++|..+|++.+++-++..+.|....+|..|..++|+||..||+....+++.+..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 33445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 004628 261 ELAKKNFENLRQ 272 (741)
Q Consensus 261 ~~fek~~eeL~~ 272 (741)
..+...+...+.
T Consensus 354 ~~~~~~~~~~~~ 365 (371)
T COG5076 354 DFVIKKTRLIRE 365 (371)
T ss_pred hhHhhhhhhhhc
Confidence 888877765543
No 54
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.83 E-value=0.015 Score=56.28 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=57.4
Q ss_pred ccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 004628 210 PMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNE 278 (741)
Q Consensus 210 PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~eE 278 (741)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+...++-+.-..+.-+|.+.|+++..-...++
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~d 127 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSED 127 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccccccC
Confidence 889999999999999999999999999999988877766666666666667788888888876554444
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=87.48 E-value=0.46 Score=57.45 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=48.9
Q ss_pred cccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHH
Q 004628 204 CEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 264 (741)
Q Consensus 204 y~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk~A~~Le~~fe 264 (741)
..--.-|..|..|..+|++..|++.+.|..|+..|.+||.+|.+-+.-+-..+..|...|.
T Consensus 1047 ~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~ 1107 (1113)
T KOG0644|consen 1047 DNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFD 1107 (1113)
T ss_pred CCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhh
Confidence 3335678999999999999999999999999999999999999877644444444444443
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=81.64 E-value=0.97 Score=56.46 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCC-----CCcccccccCccCHHHHHHHhcCCCCCCHHHHHH--HHHHHHHhhcccCCCC
Q 004628 187 TYGVFSEPVDPEE-----LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEK--DVFLICSNAMQYNAPD 249 (741)
Q Consensus 187 ~s~~F~ePVd~~e-----~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~--DV~LMfsNA~~YN~~d 249 (741)
....|..|++... +++|..+|+++||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3568888887654 4689999999999999999999999999999999 9999999999999864
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=68.46 E-value=1.1 Score=53.13 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q 004628 188 YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 262 (741)
Q Consensus 188 s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk~A~~Le~~ 262 (741)
.+.|++.++.+.+|+||.+++=+|-+....+++..+.|.....|..|+.++|.|+..|+.....++.++..|.+.
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 457888889999999999999999999999999999999999999999999999999999999999888877544
No 58
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=62.66 E-value=6.2 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=14.1
Q ss_pred ccccccCccCHHHHHHHhcCCCC
Q 004628 203 YCEVIEHPMDFGTVRNKLANGAY 225 (741)
Q Consensus 203 Yy~IIK~PMDLsTIkkKLk~g~Y 225 (741)
|--+=.+-|--.|+.+.|..+.+
T Consensus 293 YGLVGPNG~GKTTLLkHIa~Ral 315 (807)
T KOG0066|consen 293 YGLVGPNGMGKTTLLKHIAARAL 315 (807)
T ss_pred ecccCCCCCchHHHHHHHHhhhc
Confidence 44444566777777777766553
No 59
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=57.11 E-value=5.2 Score=48.93 Aligned_cols=85 Identities=26% Similarity=0.363 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCcccccccCccCHHHHHHHhcCCCC--------------C----------C
Q 004628 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAY--------------A----------T 227 (741)
Q Consensus 172 kklL~~IL~~L~k~~~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~Y--------------~----------S 227 (741)
+..|..|+++| .-++|...+|-|..+...|.+|+|++..|.+..| . +
T Consensus 76 kdhll~i~kql---------v~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~s 146 (1113)
T KOG0644|consen 76 KDHLLQILKQL---------VPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVS 146 (1113)
T ss_pred hHHHHHHHHHh---------ccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccce
Confidence 34455666554 3467888899999999999999999999998777 2 3
Q ss_pred HHH------HHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 004628 228 LEQ------FEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKN 266 (741)
Q Consensus 228 lee------F~~DV~LMfsNA~~YN~~dS~Vyk~A~~Le~~fek~ 266 (741)
+.+ ...-+.+|-.||+.++.+++ +++.++.+.++.-..
T Consensus 147 l~s~~~~~~~h~~a~~i~~at~~~akPgt-mvqkmk~ikrLlgH~ 190 (1113)
T KOG0644|consen 147 LRSIGGGFEIHHRAPSIGCATFSIAKPGT-MVQKMKNIKRLLGHR 190 (1113)
T ss_pred eccCCcchhhhhcCcccccceeeecCcHH-HHHHHHHHHHHHhhh
Confidence 333 66778889999999999999 777777776654443
No 60
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=31.84 E-value=20 Score=31.38 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=16.3
Q ss_pred ccccccCCCCCCCCCCCCC
Q 004628 70 LRRSSRRNPNPSPEKVSEG 88 (741)
Q Consensus 70 ~RrsrrRk~~~yDDedeDD 88 (741)
.|+.|+||.|.|||.+.|+
T Consensus 53 grG~R~RK~V~Y~D~LTEe 71 (74)
T PF14619_consen 53 GRGKRERKEVSYDDGLTEE 71 (74)
T ss_pred ccccccccccccCCCCCHH
Confidence 6889999999999887653
No 61
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=23.07 E-value=2.5e+02 Score=25.80 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 004628 223 GAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 270 (741)
Q Consensus 223 g~Y~SleeF~~DV~LMfsNA~~YN~~dS~Vyk~A~~Le~~fek~~eeL 270 (741)
..|-|..-|...+..|-.....++..+..+..+|..|.+.|.+.|+++
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888877777777777778999999999999999999854
No 62
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=23.00 E-value=1.2e+02 Score=26.34 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 004628 214 GTVRNKLANGAYATLEQFEKDVFLICS 240 (741)
Q Consensus 214 sTIkkKLk~g~Y~SleeF~~DV~LMfs 240 (741)
..|+..++.|.|.|..+++.|.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887765
Done!