Query 004628
Match_columns 741
No_of_seqs 333 out of 1325
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 18:52:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004628.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1924-1928//hhsearch_pdb/004628hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4alg_A Bromodomain-containing 1.0 1 1 196.5 12.5 110 167-276 29-140 (154)
2 2d9e_A Peregrin; four-helix bu 1.0 1 1 188.9 13.1 107 167-273 4-110 (121)
3 2dat_A Possible global transcr 1.0 1 1 188.6 12.7 111 163-273 6-122 (123)
4 2grc_A Probable global transcr 1.0 1 1 188.5 10.8 112 167-278 8-126 (129)
5 3fkm_X Signaling protein; brom 1.0 1 1 186.8 12.3 106 167-272 18-125 (166)
6 2oss_A HUNK1 protein, bromodom 1.0 1 1 186.7 14.0 107 167-273 18-126 (127)
7 3mb3_A PH-interacting protein; 1.0 1 1 186.3 10.8 108 167-274 18-126 (135)
8 3g0l_A Hwalp4, bromodomain adj 1.0 1 1 186.2 13.3 104 170-273 13-116 (117)
9 1e6i_A Transcriptional activat 1.0 1 1 185.6 11.8 103 170-272 13-115 (121)
10 3aad_A Transcription initiatio 1.0 1 1 185.4 8.5 103 169-271 46-148 (292)
No 1
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=1.00 E-value=1 Score=196.54 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99467999999999998079988887899979--9986000025866999999983189999999999999999996002
Q 004628 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 167 tp~p~kklL~~ILe~L~k~k~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~ 244 (741)
....++.+|..||+.|.+++.+++|.+||++. .+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 50999999999999998586853205789913224987898838998899999998548999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 28999899999999999999999853159999
Q 004628 245 YNAPDTIYFRQARSIHELAKKNFENLRQDSDD 276 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~l~~l~~~~e~ 276 (741)
||++++.||.+|..|++.|++.|.+++.+..+
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e 140 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASMPQEEQE 140 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCB
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCC
T ss_conf 87999999999999999999999978731013
No 2
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=188.91 Aligned_cols=107 Identities=39% Similarity=0.586 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99467999999999998079988887899979998600002586699999998318999999999999999999600228
Q 004628 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 167 tp~p~kklL~~ILe~L~k~k~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~YN 246 (741)
...+++..|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||+.||
T Consensus 4 ~~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 4 GSSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 65589999999999998298548657969700068889883898679999999866999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999899999999999999999853159
Q 004628 247 APDTIYFRQARSIHELAKKNFENLRQD 273 (741)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~l~~l~~~ 273 (741)
+++|.+|++|..|++.|++.|.+++..
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 3
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=188.59 Aligned_cols=111 Identities=26% Similarity=0.465 Sum_probs=103.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 799999467999999999998079------98888789997999860000258669999999831899999999999999
Q 004628 163 LGPSTPLPDKKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVF 236 (741)
Q Consensus 163 ~~p~tp~p~kklL~~ILe~L~k~k------~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~ 236 (741)
.+...+..+.+.|..||+.|++++ .+++|.+||++..+||||++|++||||.||++||+.+.|.++.+|.+||+
T Consensus 6 ~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~ 85 (123)
T 2dat_A 6 SGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVM 85 (123)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 89999799999999999999852412678412976599981007788999289887999999985799999999999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999600228999899999999999999999853159
Q 004628 237 LICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQD 273 (741)
Q Consensus 237 LIfsNA~~YN~~dS~Vyk~A~~Le~~fek~l~~l~~~ 273 (741)
|||.||++||+++|.||++|..|++.|++.+++++..
T Consensus 86 li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps~ 122 (123)
T 2dat_A 86 LLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPSS 122 (123)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999987999999999999999999999876899
No 4
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=1.00 E-value=1 Score=188.54 Aligned_cols=112 Identities=26% Similarity=0.503 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99467999999999998079-------98888789997999860000258669999999831899999999999999999
Q 004628 167 TPLPDKKLLLFILDRLQKKD-------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLIC 239 (741)
Q Consensus 167 tp~p~kklL~~ILe~L~k~k-------~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIf 239 (741)
.+..+.+.|..||+.|++++ .+++|.+||+...+||||++|++||||+||++||+.+.|.++.+|.+||+|||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 96999999999999998361123568011976388982327888988189888999999980699899999999999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 960022899989999999999999999985315999998
Q 004628 240 SNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNE 278 (741)
Q Consensus 240 sNA~~YN~~dS~Vyk~A~~Le~~fek~l~~l~~~~e~ee 278 (741)
.||++||+++|.||.+|..|++.|++.|+++....+.++
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~ 126 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999998799999999999999999999998267875555
No 5
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=186.79 Aligned_cols=106 Identities=27% Similarity=0.398 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99467999999999998079988887899979--9986000025866999999983189999999999999999996002
Q 004628 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 167 tp~p~kklL~~ILe~L~k~k~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~ 244 (741)
....+++.|..||..|++++.+++|..||++. .+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||++
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 41999999999999998588971214889823244997887668999999999997279997999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2899989999999999999999985315
Q 004628 245 YNAPDTIYFRQARSIHELAKKNFENLRQ 272 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~l~~l~~ 272 (741)
||+++|.||.+|..|++.|++.|.++..
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~l~~~~~ 125 (166)
T 3fkm_X 98 YNTSNSVVAITGKNIETYFNNQLIVMGY 125 (166)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8799999999999999999999998664
No 6
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=1.00 E-value=1 Score=186.74 Aligned_cols=107 Identities=28% Similarity=0.442 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99467999999999998079988887899979--9986000025866999999983189999999999999999996002
Q 004628 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (741)
Q Consensus 167 tp~p~kklL~~ILe~L~k~k~s~~F~ePVd~~--e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~ 244 (741)
....++.+|..||+.|++++.+++|.+|||.. .+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 97 (127)
T 2oss_A 18 QTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYI 97 (127)
T ss_dssp CCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999495546444899823235864898827999999999999869999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 28999899999999999999999853159
Q 004628 245 YNAPDTIYFRQARSIHELAKKNFENLRQD 273 (741)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~l~~l~~~ 273 (741)
||+++|.||.+|..|++.|++.|.+++.+
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 98 YNKPGDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 87999999999999999999999977888
No 7
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=186.31 Aligned_cols=108 Identities=29% Similarity=0.423 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99467999999999998079988887899979998600002586699999998318999999999999999999600228
Q 004628 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (741)
Q Consensus 167 tp~p~kklL~~ILe~L~k~k~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~YN 246 (741)
....+++.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||+.||
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 79999999999999998298876656899923279889993798589999999817999999999999999999999978
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99-98999999999999999998531599
Q 004628 247 AP-DTIYFRQARSIHELAKKNFENLRQDS 274 (741)
Q Consensus 247 ~~-dS~Vyk~A~~Le~~fek~l~~l~~~~ 274 (741)
++ +|.||.+|..|++.|++.|.++..+.
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89898999999999999999999999989
No 8
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=1.00 E-value=1 Score=186.21 Aligned_cols=104 Identities=31% Similarity=0.489 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 67999999999998079988887899979998600002586699999998318999999999999999999600228999
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~ILe~L~k~k~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~YN~~d 249 (741)
...+.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+.+.|.++++|.+||+|||.||+.||+++
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998498966652859865558828785899999999999807999799999999999999999987999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 899999999999999999853159
Q 004628 250 TIYFRQARSIHELAKKNFENLRQD 273 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~l~~l~~~ 273 (741)
|.||.+|..|++.|++.|+++...
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~~~~ 116 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDTFKV 116 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999998833
No 9
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=1.00 E-value=1 Score=185.63 Aligned_cols=103 Identities=30% Similarity=0.549 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 67999999999998079988887899979998600002586699999998318999999999999999999600228999
Q 004628 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (741)
Q Consensus 170 p~kklL~~ILe~L~k~k~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~YN~~d 249 (741)
+..+.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||+.||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCCCCHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 79999999999998098756547889822175889886898889999999805999999999999999999999987999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999999999985315
Q 004628 250 TIYFRQARSIHELAKKNFENLRQ 272 (741)
Q Consensus 250 S~Vyk~A~~Le~~fek~l~~l~~ 272 (741)
|.+|++|..|++.|++.+.+++.
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999997610
No 10
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=185.40 Aligned_cols=103 Identities=23% Similarity=0.445 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 46799999999999807998888789997999860000258669999999831899999999999999999960022899
Q 004628 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (741)
Q Consensus 169 ~p~kklL~~ILe~L~k~k~s~~F~ePVd~~e~PDYy~IIK~PMDLsTIkkKLk~g~YkSi~EF~~DV~LIfsNA~~YN~~ 248 (741)
..+...|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||++||++
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999809855543688990105568988078678789998862798599999999987888889997587
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999998531
Q 004628 249 DTIYFRQARSIHELAKKNFENLR 271 (741)
Q Consensus 249 dS~Vyk~A~~Le~~fek~l~~l~ 271 (741)
+|.||.+|..|++.|++.+.++.
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGGSH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 30899999988888886511000
Done!