BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004630
(741 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225439600|ref|XP_002265851.1| PREDICTED: uncharacterized protein LOC100265424 [Vitis vinifera]
gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera]
Length = 952
Score = 1209 bits (3128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/741 (78%), Positives = 647/741 (87%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ +QGF+T+P+FL+QGS NESELS WF N LD NSGKVVVKPTRAGSSIGVTVAYGV
Sbjct: 212 LDRQGFVTLPNFLVQGSHSNESELSKWFAENHLDTNSGKVVVKPTRAGSSIGVTVAYGVA 271
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSLKKA II EGIDDRV+VE+FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVE+Q +
Sbjct: 272 DSLKKANEIIAEGIDDRVLVEIFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEIQLHDN 331
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D+REKDAIFNYRRKYLPTQQVAYHTPPRFP+ VI SIREGASLLFQRLGL DFARIDGW
Sbjct: 332 ADMREKDAIFNYRRKYLPTQQVAYHTPPRFPMDVIGSIREGASLLFQRLGLHDFARIDGW 391
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
FLPSS + S+SE K G T+ GT++FTDINLISGMEQTSFLFQQASKVGFSHSNILR+II
Sbjct: 392 FLPSSILIPSASEKKLGRTKSGTVIFTDINLISGMEQTSFLFQQASKVGFSHSNILRSII 451
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
AC RFPNLASY S+S+ LP RS S+ EA K + +R+VFVIFGGDTSERQVSLMSG
Sbjct: 452 QRACLRFPNLASYTSLSNLLPRRSKSSQLIEAFPKTKDVRKVFVIFGGDTSERQVSLMSG 511
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVWLNLQAFND+EV PCLLA + SS D + + D + +W+LPYSLVLRHTTEEV
Sbjct: 512 TNVWLNLQAFNDLEVIPCLLAPTSGYSSKTDMDEKELDVRMKTIWTLPYSLVLRHTTEEV 571
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
LAACIEAIEPDRAA TS LRNQV+NDL+EGLKK WFTGFD+ADE P+R+S+ +W+KLAK
Sbjct: 572 LAACIEAIEPDRAALTSELRNQVMNDLMEGLKKQHWFTGFDLADEPPVRYSVEQWVKLAK 631
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E QATVFIAVHGG+GEDGTLQ LLEA GVPYTGPGV SK CMDKVATSLALNHL GV
Sbjct: 632 EVQATVFIAVHGGMGEDGTLQFLLEAGGVPYTGPGVETSKICMDKVATSLALNHLEKFGV 691
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LTINK V RKEDLL P+ DIWH+LTSKLQ +TLCVKPARDGCSTGVARLCC EDL VYV
Sbjct: 692 LTINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVKPARDGCSTGVARLCCLEDLAVYV 751
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KALEEC LRIP NS S+AHG+IEMP+PPPE+LIFEPF+ETDEI+ SS + N A+RL+W+
Sbjct: 752 KALEECFLRIPSNSLSKAHGVIEMPSPPPELLIFEPFIETDEIIVSSNAVNDTANRLIWE 811
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G+SRWVE+TVGV+GK GSMHSL PSVTVKESGDILSLEEKFQGGTGINLTPPP SI+S
Sbjct: 812 GHSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIISKA 871
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
AL+ CKQRIELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTVLIHQAL+E+
Sbjct: 872 ALESCKQRIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEE 931
Query: 721 PPMYPHQFFRKVLDLGSERFL 741
PPMYPH+FFR +LDLGSERF+
Sbjct: 932 PPMYPHRFFRTLLDLGSERFI 952
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE +P+ G + DK +SL L+ G +T+
Sbjct: 166 VFPVIHGRFGEDGGIQELLEKSNIPFVGTRSNECRQAFDKYDSSLELDR---QGFVTLPN 222
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
+ + ++ + + E + VKP R G S GV
Sbjct: 223 FLVQGSHSNESELSKWFAENHLDTNSGKVVVKPTRAGSSIGV 264
>gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
Length = 1000
Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/739 (78%), Positives = 647/739 (87%), Gaps = 9/739 (1%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+SK+GFITVP+FL+QG E +ESEL WF +N+LDP SG VVVKP AGSSIGVTVAYGV
Sbjct: 219 LSKRGFITVPNFLVQGKEADESELFKWFASNRLDPTSGTVVVKPAVAGSSIGVTVAYGVA 278
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSLKKAK +ILEGIDD+V+VELFL+GGSEFTAIV+DVGSGF+CHPVVLLPTEVELQF GS
Sbjct: 279 DSLKKAKDLILEGIDDKVLVELFLDGGSEFTAIVVDVGSGFECHPVVLLPTEVELQFHGS 338
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D+RE DAIFNYRRKYLPTQQVAYHTPPRFP+ +I IR+GASLLFQRL L DFARIDGW
Sbjct: 339 ADIRENDAIFNYRRKYLPTQQVAYHTPPRFPVDIIKKIRQGASLLFQRLRLRDFARIDGW 398
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+LPSS FSSSE K+G T+ GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR+II
Sbjct: 399 YLPSSNSAFSSSEGKFGRTDLGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRSII 458
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
AC RFP+LAS ++S LP +S + TE+ +K EG R+VFV+FGGDTSERQVSLMSG
Sbjct: 459 HRACLRFPSLASNYNLSDCLPRKSKSLQLTESFSKSEGTRKVFVLFGGDTSERQVSLMSG 518
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVWL LQAF+D++VTPCLLA S N D S R VW LPYSLVLRHTTEEV
Sbjct: 519 TNVWLKLQAFDDLDVTPCLLAPS---------NGQSSDDSFRAVWLLPYSLVLRHTTEEV 569
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
L ACIEAIEP +AAFTSHLR+QV NDL+EGLKKHSWF GFDIADELP S+ EWIKLAK
Sbjct: 570 LDACIEAIEPAQAAFTSHLRSQVTNDLMEGLKKHSWFKGFDIADELPTIFSMKEWIKLAK 629
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E QATVFIAVHGGIGEDGTLQS+LEA+GVPYTGPGV+ASKTCMDKVATSLAL+HLADLGV
Sbjct: 630 EIQATVFIAVHGGIGEDGTLQSMLEAQGVPYTGPGVVASKTCMDKVATSLALSHLADLGV 689
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LTI K+V +K+DL P +++WH LTS LQC+TLCVKPARDGCSTGVARL C EDL VYV
Sbjct: 690 LTIKKEVYKKQDLQNMPALEVWHNLTSALQCETLCVKPARDGCSTGVARLRCTEDLAVYV 749
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KALE+CLLRIPPNS S+AHG+IEMP+PPPE+LIFEPF+ETDEI+ SS+ST +NA+RLMWK
Sbjct: 750 KALEDCLLRIPPNSLSKAHGVIEMPHPPPELLIFEPFIETDEIVVSSKSTCENANRLMWK 809
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G+SRW+EITVGVIG GSMHSL PSVTVKE+GDILSLEEKFQGGTGINLTPPP SI+S E
Sbjct: 810 GHSRWLEITVGVIGTRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPTSIVSNE 869
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
LD+CKQ IELIAN LQLEGFSRIDAF+NVD+GEVLIIEVNTVPGMTPSTVLIHQAL+EQ
Sbjct: 870 VLDRCKQHIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQ 929
Query: 721 PPMYPHQFFRKVLDLGSER 739
PP+YPH+FFR +LDL SER
Sbjct: 930 PPVYPHRFFRTLLDLASER 948
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 128/346 (36%), Gaps = 76/346 (21%)
Query: 400 FDIADELPMRH--SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
FD E R S++E+ + + VF +HG GEDG +Q LLE +P+ G G
Sbjct: 145 FDFKLESLARQFSSLSEFAEHLAASVDIVFPVIHGRFGEDGGIQELLENYNIPFVGTGSS 204
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517
+ DK S+ L+ G +T+ + + ++ ++ + + T+ VK
Sbjct: 205 ECRQAFDKYYASI---ELSKRGFITVPNFLVQGKEADESELFKWFASNRLDPTSGTVVVK 261
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577
PA G S GV + A+G+ + + LI E
Sbjct: 262 PAVAGSSIGV----------------------------TVAYGVADSLKKAKD-LILEGI 292
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS--LMP---------SV 626
D++L L G S + I V V G H L+P S
Sbjct: 293 --DDKVLV----------ELFLDGGSEFTAIVVDV-GSGFECHPVVLLPTEVELQFHGSA 339
Query: 627 TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA 686
++E+ I + K+ + PP + + K +Q L+ L+L F+RID
Sbjct: 340 DIRENDAIFNYRRKYLPTQQVAYHTPPR--FPVDIIKKIRQGASLLFQRLRLRDFARIDG 397
Query: 687 ----------------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F D G +L ++N + GM ++ L QA
Sbjct: 398 WYLPSSNSAFSSSEGKFGRTDLGTILFTDINLISGMEQTSFLFQQA 443
>gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa]
gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa]
Length = 931
Score = 1181 bits (3055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/741 (77%), Positives = 641/741 (86%), Gaps = 26/741 (3%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+SKQGFITVPSFL+QGSE+ E ELS WF +N+LDPNSGKVVVKP RAGSSIGVTVAYGV
Sbjct: 217 LSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARAGSSIGVTVAYGVS 276
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSLKKA +I EGIDD+++VE+FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVE+QF GS
Sbjct: 277 DSLKKANDLISEGIDDKILVEIFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEIQFHGS 336
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
VDVRE+DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IREGAS+LF++LGL DFARIDGW
Sbjct: 337 VDVREEDAIFNYRRKYLPTQQVAYHTPPRFPLKVIENIREGASILFRQLGLRDFARIDGW 396
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
FLP+S H SSS K+G TE GTI++ DINLISGMEQTSFLFQQASKVGFSHSNILR++I
Sbjct: 397 FLPNSMHALSSSAGKFGRTELGTIIYNDINLISGMEQTSFLFQQASKVGFSHSNILRSVI 456
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
AC RFPNLAS+N VS+HLP RS EA NKREGIR++FV+FGGDTSERQVSLMSG
Sbjct: 457 HRACLRFPNLASHNEVSAHLPRRSKSLPFDEAFNKREGIRKIFVLFGGDTSERQVSLMSG 516
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVWLNL AF++ + L +C YSLVLRHTTEEV
Sbjct: 517 TNVWLNLLAFDETTI----LMMVPEC----------------------YSLVLRHTTEEV 550
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
L ACIEAIEP +AA TSHLRNQV+NDL+E LKKHSWFTGFDIADE P+R+S+ +W+KLAK
Sbjct: 551 LDACIEAIEPAQAALTSHLRNQVMNDLMECLKKHSWFTGFDIADEQPVRYSLEKWVKLAK 610
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E QATVFIAVHGGIGEDGTLQSLLE+EGVP+TGPG ASKTCMDKVATSLAL+HLADLG+
Sbjct: 611 EVQATVFIAVHGGIGEDGTLQSLLESEGVPHTGPGAAASKTCMDKVATSLALSHLADLGI 670
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LTINKDV RKEDLL P ++IW EL SKLQC+TLCVKPARDGCSTGVARLCC EDL VY+
Sbjct: 671 LTINKDVCRKEDLLNMPALEIWDELISKLQCETLCVKPARDGCSTGVARLCCVEDLAVYI 730
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KAL++CLLRIPP+SFS++HGMIEMP+PPPE LIFEPF+ETDEI+ SS+S + A L+WK
Sbjct: 731 KALKDCLLRIPPDSFSKSHGMIEMPSPPPERLIFEPFIETDEIVVSSKSGGEKAQGLVWK 790
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
GNSRWVEITVGVIG GSM SL PSVTVKE+GDILSLEEKFQGGTGINLTPPPASI+S E
Sbjct: 791 GNSRWVEITVGVIGTLGSMRSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPASIVSNE 850
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
AL++CK RIELIAN LQLEGFSRIDAF+NVD+GEVLIIEVNTVPGMTPSTVLIHQAL+EQ
Sbjct: 851 ALERCKHRIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALAEQ 910
Query: 721 PPMYPHQFFRKVLDLGSERFL 741
PPMYPH+FFR +LDL SER +
Sbjct: 911 PPMYPHKFFRTLLDLASERII 931
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 121/333 (36%), Gaps = 74/333 (22%)
Query: 411 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 470
S++E+ + + VF +HG GEDG +Q LLE VP+ G G + DK SL
Sbjct: 156 SLDEFAEHLAASVDIVFPVIHGRFGEDGGIQELLERHNVPFVGTGSRECRKAFDKYDASL 215
Query: 471 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
L+ G +T+ + + ++ + + + + VKPAR G S GV
Sbjct: 216 ---ELSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARAGSSIGVTVA 272
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
D S +A+ +I + ++ E F+E
Sbjct: 273 YGVSD------------------SLKKANDLIS--EGIDDKILVEIFLE----------- 301
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHS--LMP---------SVTVKESGDILSLEE 639
G S + I + V G H L+P SV V+E I +
Sbjct: 302 ----------GGSEFTAIVLDV-GSGFDCHPVVLLPTEVEIQFHGSVDVREEDAIFNYRR 350
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA------------- 686
K+ + PP + ++ ++ ++ L L F+RID
Sbjct: 351 KYLPTQQVAYHTPPR--FPLKVIENIREGASILFRQLGLRDFARIDGWFLPNSMHALSSS 408
Query: 687 ---FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F + G ++ ++N + GM ++ L QA
Sbjct: 409 AGKFGRTELGTIIYNDINLISGMEQTSFLFQQA 441
>gi|357506461|ref|XP_003623519.1| D-alanine--D-alanine ligase [Medicago truncatula]
gi|355498534|gb|AES79737.1| D-alanine--D-alanine ligase [Medicago truncatula]
Length = 955
Score = 1168 bits (3022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/739 (75%), Positives = 640/739 (86%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ K GF+TVPSFL+QG E N+SELS WF ++LDP++GKVVVKPTR GSSIGVTVAYGV
Sbjct: 215 LRKHGFVTVPSFLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSSIGVTVAYGVN 274
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSL KA I+ EGIDD+V++ELFLEGGSEFTAIVLDVGS D PV LLPTEVELQF G
Sbjct: 275 DSLVKASEIMSEGIDDKVLIELFLEGGSEFTAIVLDVGSSSDSFPVALLPTEVELQFLGE 334
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D++E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS+LFQ+L L DFARIDGW
Sbjct: 335 NDLKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASILFQQLHLQDFARIDGW 394
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
FLP S SSSE+++G +E GTI+FTDIN+ISGMEQTSFLFQQASKVGFSH+NILR+I+
Sbjct: 395 FLPDSGCKLSSSESEFGRSESGTIIFTDINMISGMEQTSFLFQQASKVGFSHTNILRSIV 454
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
HAC RFPNLAS + +SS +P RS S+ ++ +REG ++VFVIFGGDTSERQVSLMSG
Sbjct: 455 HHACLRFPNLASVSGISSQIPSRSKSSELNKSFPRREGAQKVFVIFGGDTSERQVSLMSG 514
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVWLNL FND+EVTPCLL+S+ D +S +D I D +R VWSLPYSLVLRHTTEEV
Sbjct: 515 TNVWLNLLGFNDLEVTPCLLSSTSDYASSVDIGIKADDVWNRTVWSLPYSLVLRHTTEEV 574
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
L AC+EAIEP+RAA TS LR QV+NDL+EGLK H+WFTGFDIA+ELP + S+ EWIKLAK
Sbjct: 575 LDACVEAIEPNRAALTSDLRKQVMNDLMEGLKDHNWFTGFDIANELPKKFSLREWIKLAK 634
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E +ATVFIAVHGGIGEDG LQSLL+AEGVPYTGPG +ASK CMDKVATS+A+NHLA+LG+
Sbjct: 635 EVKATVFIAVHGGIGEDGRLQSLLDAEGVPYTGPGALASKICMDKVATSVAVNHLANLGI 694
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LTINK+V RK+DL PI DIWH+LT KLQC+TLCVKPARDGCSTGVARL C+ DL +Y+
Sbjct: 695 LTINKEVWRKDDLSNKPINDIWHDLTQKLQCETLCVKPARDGCSTGVARLRCSNDLAIYI 754
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KALE+ LLRIPPNS S+AHGMIEMPNPPPE+LIFEPF+ETDEI+ SS+ N+ MWK
Sbjct: 755 KALEDSLLRIPPNSLSKAHGMIEMPNPPPELLIFEPFIETDEIIVSSKVKNETGHGFMWK 814
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
GNSRWVEITVGVIGK GSMHSL PSVTVKE+GDILSLEEKFQGGTGINLTPPP SIMS +
Sbjct: 815 GNSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPLSIMSEK 874
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
AL +CK+ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTVL+HQAL+EQ
Sbjct: 875 ALQRCKKHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLVHQALAEQ 934
Query: 721 PPMYPHQFFRKVLDLGSER 739
PP+YPHQFFR +LDL SER
Sbjct: 935 PPLYPHQFFRTLLDLASER 953
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 117/317 (36%), Gaps = 72/317 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE VP+ G G DK S + L G +T+
Sbjct: 169 VFPVIHGRFGEDGGIQELLEKYNVPFVGTGSSECCQAFDKYKAS---SELRKHGFVTVPS 225
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ + + K+ + + + + + VKP R G S GV
Sbjct: 226 FLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSSIGV------------------ 267
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ A+G + + V+ EI+ S +K L +G S +
Sbjct: 268 ----------TVAYG------------VNDSLVKASEIM-SEGIDDKVLIELFLEGGSEF 304
Query: 606 VEITVGVIGKCGSMH-SLMPSVT---------VKESGDILSLEEKFQGGTGINLTPPPAS 655
I + V S +L+P+ +KE+ I + K+ + PP
Sbjct: 305 TAIVLDVGSSSDSFPVALLPTEVELQFLGENDLKENDAIFNYRRKYLPTQQVAYHTPPR- 363
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDA----------------FVNVDNGEVLIIE 699
+ ++ ++ ++ L L+ F+RID F ++G ++ +
Sbjct: 364 -FPLDVIENIRKGASILFQQLHLQDFARIDGWFLPDSGCKLSSSESEFGRSESGTIIFTD 422
Query: 700 VNTVPGMTPSTVLIHQA 716
+N + GM ++ L QA
Sbjct: 423 INMISGMEQTSFLFQQA 439
>gi|449439825|ref|XP_004137686.1| PREDICTED: uncharacterized protein LOC101204441 [Cucumis sativus]
Length = 960
Score = 1167 bits (3020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/739 (75%), Positives = 647/739 (87%), Gaps = 1/739 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GFITVP+FL+Q V+E+ELS WFV+N+LD +SGKVVVKP RAGSSIGV+VAYGV+
Sbjct: 221 LDRLGFITVPNFLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPARAGSSIGVSVAYGVV 280
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSLKKA II E IDD+V+VE+FLEGGSEFTAIVLDVGSG CHPVVLLPTEVE+Q G
Sbjct: 281 DSLKKANEIISEEIDDKVLVEVFLEGGSEFTAIVLDVGSGSVCHPVVLLPTEVEIQSCGL 340
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D EKDAIFNYRRKYLPTQQVAYHTPPRFPI VI +IREGASLLF+ LGLCDFARIDGW
Sbjct: 341 ADAGEKDAIFNYRRKYLPTQQVAYHTPPRFPIDVIETIREGASLLFKGLGLCDFARIDGW 400
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+LPS +H S S K+G TE GT+++TDINLISGMEQTSFLFQQASKVGFSHSNILR+II
Sbjct: 401 YLPSFSHESSCSTGKFGKTESGTVVYTDINLISGMEQTSFLFQQASKVGFSHSNILRSII 460
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
HAC R+P+L S + +S ++P RS S+ ++A + E IR+VFVIFGG+TSERQVSLMSG
Sbjct: 461 YHACLRYPSLESLDCMSGNVPRRSISSQRSQAYSTHESIRKVFVIFGGNTSERQVSLMSG 520
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVWLNLQAF+D+EVTPCLLASSI+ SG+D + + D +S+ VWSLPYSLVLRHTTEEV
Sbjct: 521 TNVWLNLQAFDDLEVTPCLLASSIEQESGVDLDKNEADLTSKTVWSLPYSLVLRHTTEEV 580
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
LAAC+EAIEP+RAA TSHLR VV DL +GLKKHSWF GFDI D+LP+R S+ +WI+ K
Sbjct: 581 LAACVEAIEPNRAALTSHLRELVVTDLEQGLKKHSWFAGFDIKDKLPVRFSLEQWIEKVK 640
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E ATVFIAVHGGIGEDGTLQSLLEA+GVPYTGPGV AS CMDKV+TSLALNHL+D GV
Sbjct: 641 EVDATVFIAVHGGIGEDGTLQSLLEAKGVPYTGPGVAASNICMDKVSTSLALNHLSDFGV 700
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LTI KDVRRK+DLL+ PI+++WH+LT KLQC++LCVKPARDGCSTGVARLCCA+DL VYV
Sbjct: 701 LTIKKDVRRKDDLLRFPILNVWHDLTCKLQCQSLCVKPARDGCSTGVARLCCADDLAVYV 760
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KALE+CL+RIP NS S+AHGMIEMP PPPE+LIFEPF+ETDEI+ SS++ + ++RL+WK
Sbjct: 761 KALEDCLVRIPSNSLSKAHGMIEMPKPPPELLIFEPFIETDEIIVSSKTIDA-SERLLWK 819
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G SRWVEITVGV+G GSM SL PSVTVKESGDILSLEEKFQGGTGINLTPPP SI+S E
Sbjct: 820 GQSRWVEITVGVVGTRGSMRSLSPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIISNE 879
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+L KCKQ IELIANALQLEGFSRIDAFV+VD+G+VL+IEVNTVPGMTPSTVLIHQAL+E
Sbjct: 880 SLGKCKQHIELIANALQLEGFSRIDAFVDVDSGKVLVIEVNTVPGMTPSTVLIHQALAET 939
Query: 721 PPMYPHQFFRKVLDLGSER 739
PP+YPHQFFR++LDL SER
Sbjct: 940 PPVYPHQFFRRLLDLASER 958
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 120/318 (37%), Gaps = 74/318 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE +P+ G G S DK SL L+ LG +T+
Sbjct: 175 VFPVIHGRFGEDGGIQELLETHNIPFVGTGSKESSNAFDKYNASLELDR---LGFITVPN 231
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ + + +T + + L + VKPAR G S GV
Sbjct: 232 FLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPARAGSSIGV------------------ 273
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
S A+G+++ EI+ S + +K + +G S +
Sbjct: 274 ----------SVAYGVVDSLKKANEII-------------SEEIDDKVLVEVFLEGGSEF 310
Query: 606 VEITVGVIGKCGSMHS--LMP------SVTVKESGD---ILSLEEKFQGGTGINLTPPPA 654
I + V G H L+P S + ++G+ I + K+ + PP
Sbjct: 311 TAIVLDV-GSGSVCHPVVLLPTEVEIQSCGLADAGEKDAIFNYRRKYLPTQQVAYHTPPR 369
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDA----------------FVNVDNGEVLII 698
+ ++ ++ L+ L L F+RID F ++G V+
Sbjct: 370 --FPIDVIETIREGASLLFKGLGLCDFARIDGWYLPSFSHESSCSTGKFGKTESGTVVYT 427
Query: 699 EVNTVPGMTPSTVLIHQA 716
++N + GM ++ L QA
Sbjct: 428 DINLISGMEQTSFLFQQA 445
>gi|356532203|ref|XP_003534663.1| PREDICTED: uncharacterized protein LOC100819595 [Glycine max]
Length = 949
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/740 (75%), Positives = 636/740 (85%), Gaps = 1/740 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ K GFITVPSFL+QG E ++SELS WF ++LDP+ GKVVVKPTR GSSIGV VAYGV
Sbjct: 208 LRKHGFITVPSFLVQGYETDKSELSEWFKKHQLDPDLGKVVVKPTRGGSSIGVGVAYGVN 267
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSL KA I+ EGID +V++E+FLEGG+EFTAIVLDVGS D PVVLLPTEVELQF+G+
Sbjct: 268 DSLVKANEIMSEGIDKKVLIEIFLEGGNEFTAIVLDVGSDLDSFPVVLLPTEVELQFRGA 327
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
DV+E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GASLLFQRL L DFARIDGW
Sbjct: 328 NDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASLLFQRLCLQDFARIDGW 387
Query: 181 FLPSSTHVFSS-SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239
FLP+S+ S S++++G TE G I+FTDIN+ISGMEQTSFLFQQASKVGFSH+NILR+I
Sbjct: 388 FLPNSSSKLSPFSQSEFGRTESGAIIFTDINMISGMEQTSFLFQQASKVGFSHTNILRSI 447
Query: 240 IGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMS 299
I HAC RFPNLAS + +S LP RS + ++ ++REG R+VFVIFGG+TSERQVSLMS
Sbjct: 448 IHHACLRFPNLASVSGISGQLPSRSKSLQRNKSFSRREGTRKVFVIFGGNTSERQVSLMS 507
Query: 300 GTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359
GTNVWLNL AF+D+EVTPCLL+ + +C+S +D D +R VWSLPYSLVLRHTTEE
Sbjct: 508 GTNVWLNLLAFHDLEVTPCLLSPTSECASSIDMGKKADDVMNRTVWSLPYSLVLRHTTEE 567
Query: 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA 419
VL AC+EAIEP+ AA TS LR +V+NDL+EGLK H+WFTGFDIAD+LP++ S+ +WIKLA
Sbjct: 568 VLDACMEAIEPEHAAITSELRKKVMNDLMEGLKDHNWFTGFDIADDLPVKFSLRQWIKLA 627
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
KE QATVFIAVHGGIGEDGTLQSLL+AEGVPYTGPG MASK CMDKVATS+AL HLA+ G
Sbjct: 628 KEVQATVFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVALKHLANSG 687
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
VLTINKDVR+K+DL PI D WH+LT KLQC+TLCVKPA+DGCSTGVARLCC EDL +Y
Sbjct: 688 VLTINKDVRQKDDLSNKPINDTWHDLTRKLQCQTLCVKPAKDGCSTGVARLCCPEDLAIY 747
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
VKALE+CLLRIPPN S+AHGMIEMPNPPPE LIFEPF+ETDEI+ +S+ + L W
Sbjct: 748 VKALEDCLLRIPPNCLSKAHGMIEMPNPPPEHLIFEPFIETDEIIVTSKFEDATGHGLTW 807
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
KG+SRWVEITVGVIGK GSMHSL PSVTVKESGDILSLEEKFQGGTGINLTPPP SIMS
Sbjct: 808 KGHSRWVEITVGVIGKRGSMHSLSPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIMSE 867
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
AL +CKQ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTVLIHQAL E
Sbjct: 868 NALKRCKQHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALVE 927
Query: 720 QPPMYPHQFFRKVLDLGSER 739
QPP+YPHQFFRK+LDL SER
Sbjct: 928 QPPLYPHQFFRKLLDLASER 947
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 118/320 (36%), Gaps = 77/320 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE VP+ G G DK SL L G +T+
Sbjct: 162 VFPVIHGQFGEDGGIQELLEKYNVPFVGTGSKECCQAFDKHKASLELR---KHGFITVPS 218
Query: 486 DVRRKEDLLKTPIVDIW--HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+ + + K+ + + + H+L L + VKP R G S GV
Sbjct: 219 FLVQGYETDKSELSEWFKKHQLDPDL--GKVVVKPTRGGSSIGVG--------------- 261
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
A+G + + V+ +EI+ S K + +G +
Sbjct: 262 -------------VAYG------------VNDSLVKANEIM-SEGIDKKVLIEIFLEGGN 295
Query: 604 RWVEITVGVIGKCGSMH-SLMPSVT---------VKESGDILSLEEKFQGGTGINLTPPP 653
+ I + V S L+P+ VKE+ I + K+ + PP
Sbjct: 296 EFTAIVLDVGSDLDSFPVVLLPTEVELQFRGANDVKENDAIFNYRRKYLPTQQVAYHTPP 355
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDA-----------------FVNVDNGEVL 696
+ ++ ++ L+ L L+ F+RID F ++G ++
Sbjct: 356 R--FPLDVIENIRKGASLLFQRLCLQDFARIDGWFLPNSSSKLSPFSQSEFGRTESGAII 413
Query: 697 IIEVNTVPGMTPSTVLIHQA 716
++N + GM ++ L QA
Sbjct: 414 FTDINMISGMEQTSFLFQQA 433
>gi|356566751|ref|XP_003551592.1| PREDICTED: uncharacterized protein LOC100775955 [Glycine max]
Length = 955
Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/740 (75%), Positives = 638/740 (86%), Gaps = 1/740 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ K GFITVPSFL+QG E +SELS WF ++LDP+ GKVVVKPTR GSSIGV VAYGV
Sbjct: 214 LRKHGFITVPSFLVQGYETKKSELSEWFEKHQLDPDLGKVVVKPTRGGSSIGVRVAYGVN 273
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSL KA I+ EGID++V++E++LEGGSEFTAIVLDVGS D PVVLLPTEVELQF+G+
Sbjct: 274 DSLVKANEIMSEGIDNKVLIEIYLEGGSEFTAIVLDVGSASDSFPVVLLPTEVELQFRGA 333
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
DV+E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GASL+FQ+L L DFARIDGW
Sbjct: 334 NDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASLIFQQLCLQDFARIDGW 393
Query: 181 FLPSSTHVFSSS-ETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239
FLP+S+ S S E+++G TE GTI+FTDINLISGMEQTSFLFQQASKVGFSH+NILR+I
Sbjct: 394 FLPNSSSKLSPSPESEFGRTESGTIIFTDINLISGMEQTSFLFQQASKVGFSHTNILRSI 453
Query: 240 IGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMS 299
I HAC RFPNLAS + +S LP RS + +++ ++ EG R+VFVIFGG+TSERQVSLMS
Sbjct: 454 IHHACLRFPNLASVSGISGQLPSRSKSLQQSKSFSRHEGTRKVFVIFGGNTSERQVSLMS 513
Query: 300 GTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359
GTNVWLNL AF+D+EVTPCLL+ + +C+S +D D +R V SLPYSLVLRHTTEE
Sbjct: 514 GTNVWLNLLAFHDLEVTPCLLSPTSECASSVDIGKKADDVMNRTVLSLPYSLVLRHTTEE 573
Query: 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA 419
VL AC+EAIEP+RAA TS LR +V+NDL+EGLK H+WFTGFDIAD+LP + S+ +WIKLA
Sbjct: 574 VLDACMEAIEPERAAITSDLRKKVMNDLMEGLKDHNWFTGFDIADDLPAKFSLRQWIKLA 633
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
KE QAT+FIAVHGGIGEDGTLQSLL+AEGVPYTGPG MASK CMDKVATS+A+ HLA+ G
Sbjct: 634 KEVQATIFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVAIKHLANSG 693
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
VLTINK+VR+K+DL PI D WH+LT KLQC+TLCVKPA+DGCSTGVARLCC+EDL +Y
Sbjct: 694 VLTINKNVRQKDDLSNKPISDTWHDLTRKLQCQTLCVKPAKDGCSTGVARLCCSEDLAIY 753
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
V+ALE+CLLRIPPNS S+AHGMIEMPNPPPE LIFEPF+ETDEI+ +S+ + L W
Sbjct: 754 VRALEDCLLRIPPNSLSKAHGMIEMPNPPPEYLIFEPFIETDEIIVTSKFEDATGHGLTW 813
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
KG+SRWVEITVGVIGK GSMHSL PSVTVKESGDILSLEEKFQGGTGINLTPPP SIMS
Sbjct: 814 KGHSRWVEITVGVIGKRGSMHSLSPSVTVKESGDILSLEEKFQGGTGINLTPPPLSIMSE 873
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
AL +CKQ IELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTVLIHQAL E
Sbjct: 874 NALKRCKQHIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALVE 933
Query: 720 QPPMYPHQFFRKVLDLGSER 739
QPP+YPHQFFRK+LDL SER
Sbjct: 934 QPPLYPHQFFRKLLDLASER 953
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 120/324 (37%), Gaps = 85/324 (26%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE VP+ G G DK SL L G +T+
Sbjct: 168 VFPVIHGQFGEDGGIQELLEKYNVPFVGTGSKECCQAFDKHKASLELR---KHGFITVPS 224
Query: 486 DVRRKEDLLKTPIVDIW--HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+ + + K+ + + + H+L L + VKP R G S GV
Sbjct: 225 FLVQGYETKKSELSEWFEKHQLDPDL--GKVVVKPTRGGSSIGV---------------- 266
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
R+ A+G + + V+ +EI+ S NK + +G S
Sbjct: 267 -----RV-------AYG------------VNDSLVKANEIM-SEGIDNKVLIEIYLEGGS 301
Query: 604 RWVEITVGVIGKCGSMHSLMPSV--------------TVKESGDILSLEEKFQGGTGINL 649
+ I + V GS P V VKE+ I + K+ +
Sbjct: 302 EFTAIVLDV----GSASDSFPVVLLPTEVELQFRGANDVKENDAIFNYRRKYLPTQQVAY 357
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA-----------------FVNVDN 692
PP + ++ ++ LI L L+ F+RID F ++
Sbjct: 358 HTPPR--FPLDVIENIRKGASLIFQQLCLQDFARIDGWFLPNSSSKLSPSPESEFGRTES 415
Query: 693 GEVLIIEVNTVPGMTPSTVLIHQA 716
G ++ ++N + GM ++ L QA
Sbjct: 416 GTIIFTDINLISGMEQTSFLFQQA 439
>gi|449483593|ref|XP_004156633.1| PREDICTED: uncharacterized LOC101204441 [Cucumis sativus]
Length = 894
Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/745 (74%), Positives = 641/745 (86%), Gaps = 7/745 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GFITVP+FL+Q V+E+ELS WFV+N+LD +SGKVVVKP RAGSSIGV+VAYGV+
Sbjct: 149 LDRLGFITVPNFLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPARAGSSIGVSVAYGVV 208
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSLKKA II E IDD+V+VE+FLEGGSEFTAIVLDVGSG CHPVVLLPTEVE+Q G
Sbjct: 209 DSLKKANEIISEEIDDKVLVEVFLEGGSEFTAIVLDVGSGSVCHPVVLLPTEVEIQSCGL 268
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D EKDAIFNYRRKYLPTQQVAYHTPPRFPI VI +IREGASLLF+ LGLCDFARIDGW
Sbjct: 269 ADAGEKDAIFNYRRKYLPTQQVAYHTPPRFPIDVIETIREGASLLFKGLGLCDFARIDGW 328
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKV------GFSHSN 234
+LPS +H S S K+G TE GT+++TDINLISGMEQTSF F + + FSHSN
Sbjct: 329 YLPSFSHESSCSTGKFGKTESGTVVYTDINLISGMEQTSFCFSKPQSLIYSFPGWFSHSN 388
Query: 235 ILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQ 294
ILR+II HAC R+P+L S + +S ++P RS S+ ++A + E IR+VFVIFGG+TSERQ
Sbjct: 389 ILRSIIYHACLRYPSLESLDCMSGNVPRRSISSQRSQAYSTHESIRKVFVIFGGNTSERQ 448
Query: 295 VSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLR 354
VSLMSGTNVWLNLQAF+D+EVTPCLLASSI+ SG+D + + D +S+ VWSLPYSLVLR
Sbjct: 449 VSLMSGTNVWLNLQAFDDLEVTPCLLASSIEQESGVDLDKNEADLTSKTVWSLPYSLVLR 508
Query: 355 HTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINE 414
HTTEEVLAAC+EAIEP+RAA TSHLR VV DL +GLKKHSWF GFDI D+LP+R S+ +
Sbjct: 509 HTTEEVLAACVEAIEPNRAALTSHLRELVVTDLEQGLKKHSWFAGFDIKDKLPVRFSLEQ 568
Query: 415 WIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
WI+ KE ATVFIAVHGGIGEDGTLQSLLEA+GVPYTGPGV AS CMDKV+TSLALNH
Sbjct: 569 WIEKVKEVDATVFIAVHGGIGEDGTLQSLLEAKGVPYTGPGVAASNICMDKVSTSLALNH 628
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L+D GVLTI KDVRRK+DLL+ PI+++WH+LT KLQC++LCVKPARDGCSTGVARLCCA+
Sbjct: 629 LSDFGVLTIKKDVRRKDDLLRFPILNVWHDLTCKLQCQSLCVKPARDGCSTGVARLCCAD 688
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
DL VYVKALE+CL+RIP NS S+AHGMIEMP PPPE+LIFEPF+ETDEI+ SS++ + +
Sbjct: 689 DLAVYVKALEDCLVRIPSNSLSKAHGMIEMPKPPPELLIFEPFIETDEIIVSSKTIDA-S 747
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+RL+WKG SRWVEITVGV+G GSM SL PSVTVKESGDILSLEEKFQGGTGINLTPPP
Sbjct: 748 ERLLWKGQSRWVEITVGVVGTRGSMRSLSPSVTVKESGDILSLEEKFQGGTGINLTPPPL 807
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
SI+S E+L KCKQ IELIANALQLEGFSRIDAFV+VD+G+VL+IEVNTVPGMTPSTVLIH
Sbjct: 808 SIISNESLGKCKQHIELIANALQLEGFSRIDAFVDVDSGKVLVIEVNTVPGMTPSTVLIH 867
Query: 715 QALSEQPPMYPHQFFRKVLDLGSER 739
QAL+E PP+YPHQFFR++LDL SER
Sbjct: 868 QALAETPPVYPHQFFRRLLDLASER 892
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE +P+ G G S DK SL L+ LG +T+
Sbjct: 103 VFPVIHGRFGEDGGIQELLETHNIPFVGTGSKESSNAFDKYNASLELDR---LGFITVPN 159
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
+ + + +T + + L + VKPAR G S GV+
Sbjct: 160 FLVQAGGVSETELSKWFVSNQLDLSSGKVVVKPARAGSSIGVS 202
>gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
lyrata]
gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
lyrata]
Length = 943
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/747 (68%), Positives = 606/747 (81%), Gaps = 23/747 (3%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GF+TVP++L+QG+EV++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV
Sbjct: 214 LKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVN 273
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF GS
Sbjct: 274 DSIKKAIELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSGCHPVVLMPTEVQLQFHGS 333
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D++E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+F++LGL DFARIDGW
Sbjct: 334 GDLQE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFKKLGLRDFARIDGW 392
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+L ++++ S+SET G E G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRT++
Sbjct: 393 YLAPNSNLSSASET-LGGPESGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTVV 451
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
ACSRFP+L YN G S + + L +++VFVIFGGDTSERQVS+MSG
Sbjct: 452 HRACSRFPHLTWYNY------GYSLLLQGSTTLEVSGDVQKVFVIFGGDTSERQVSVMSG 505
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVW+NLQ F D+ VTPCLL+ S+ SSG N+ + R VW LPYS+VLRHT EEV
Sbjct: 506 TNVWINLQRFVDLNVTPCLLSPSLGNSSGASLNLDN-----REVWVLPYSVVLRHTAEEV 560
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
LAAC+EA+EPDRA FTS L+ QV+ DL++GLK SWF GFDI DELP S+ EWIK A+
Sbjct: 561 LAACLEAVEPDRALFTSLLQKQVMEDLMDGLKNQSWFAGFDITDELPRNFSLKEWIKHAR 620
Query: 421 ENQATVFIA------VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
E QATVFIA +HGGIGEDGTLQ+LLE EGV YTGPGV+AS+TCMDKV TS AL+H
Sbjct: 621 EAQATVFIAGYRYIFMHGGIGEDGTLQALLEDEGVSYTGPGVLASRTCMDKVMTSQALSH 680
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L++LG+ TI+KDVRR ED++ I ++W EL SK QC TLCVKPA+DGCSTGVARLCC+E
Sbjct: 681 LSELGIHTISKDVRRTEDIMHETIPNVWDELISKFQCLTLCVKPAKDGCSTGVARLCCSE 740
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
DL VYV+AL++CLLRIPPN+ S+ HG IEMPNP PE LIFEPFVETDEI+ SS K
Sbjct: 741 DLAVYVQALKDCLLRIPPNTLSKTHGTIEMPNPTPEFLIFEPFVETDEIIVSS----KVK 796
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+L WKG RWVE+TVGVIGK GSMHSL PS+TVKESGDILSLEEKFQGGTGINLTPPP
Sbjct: 797 QQLSWKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPP 856
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
+IMS EAL++CKQRIELIA L LEGFSRIDAFV+V+ GEVL+IEVNTVPGMTPSTVLI
Sbjct: 857 TIMSKEALERCKQRIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQ 916
Query: 715 QALSEQPPMYPHQFFRKVLDLGSERFL 741
QAL+EQPPMYP QFFR +L L ++R +
Sbjct: 917 QALAEQPPMYPPQFFRTLLHLATQRVI 943
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 82/391 (20%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H + ++ I+PD AF ++ + + +D K S GF
Sbjct: 102 VLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFS------- 152
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
S++++ + VF +HG GEDG +Q LLE++ +P+ G G DK
Sbjct: 153 --SLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRECIRAFDKYEA 210
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
SL L +LG +T+ + + ++ K+ I + + L+ + VKPA+ G S GV
Sbjct: 211 SL---ELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKAGSSIGVK 267
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
D KA+E L I + ++ E F+E D F++
Sbjct: 268 VAFGVND--SIKKAIELILEGI------------------DDRVVVEVFIE-DAYEFTA- 305
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPS---VTVKESGD-----ILSLEEK 640
+ + VG C + LMP+ + SGD I K
Sbjct: 306 -----------------IVLDVGSGSGCHPV-VLMPTEVQLQFHGSGDLQENAIFDYRRK 347
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-------- 692
+ + PP + ++ LI L L F+RID + N
Sbjct: 348 YLPTQQVTYHTPPR--FPIHVIKSIREEASLIFKKLGLRDFARIDGWYLAPNSNLSSASE 405
Query: 693 -------GEVLIIEVNTVPGMTPSTVLIHQA 716
G+++ ++N + GM ++ L QA
Sbjct: 406 TLGGPESGDIIFTDINLISGMEQTSFLFQQA 436
>gi|357506463|ref|XP_003623520.1| D-alanine--D-alanine ligase [Medicago truncatula]
gi|355498535|gb|AES79738.1| D-alanine--D-alanine ligase [Medicago truncatula]
Length = 877
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/658 (74%), Positives = 565/658 (85%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ K GF+TVPSFL+QG E N+SELS WF ++LDP++GKVVVKPTR GSSIGVTVAYGV
Sbjct: 215 LRKHGFVTVPSFLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSSIGVTVAYGVN 274
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DSL KA I+ EGIDD+V++ELFLEGGSEFTAIVLDVGS D PV LLPTEVELQF G
Sbjct: 275 DSLVKASEIMSEGIDDKVLIELFLEGGSEFTAIVLDVGSSSDSFPVALLPTEVELQFLGE 334
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D++E DAIFNYRRKYLPTQQVAYHTPPRFP+ VI +IR+GAS+LFQ+L L DFARIDGW
Sbjct: 335 NDLKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIENIRKGASILFQQLHLQDFARIDGW 394
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
FLP S SSSE+++G +E GTI+FTDIN+ISGMEQTSFLFQQASKVGFSH+NILR+I+
Sbjct: 395 FLPDSGCKLSSSESEFGRSESGTIIFTDINMISGMEQTSFLFQQASKVGFSHTNILRSIV 454
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
HAC RFPNLAS + +SS +P RS S+ ++ +REG ++VFVIFGGDTSERQVSLMSG
Sbjct: 455 HHACLRFPNLASVSGISSQIPSRSKSSELNKSFPRREGAQKVFVIFGGDTSERQVSLMSG 514
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVWLNL FND+EVTPCLL+S+ D +S +D I D +R VWSLPYSLVLRHTTEEV
Sbjct: 515 TNVWLNLLGFNDLEVTPCLLSSTSDYASSVDIGIKADDVWNRTVWSLPYSLVLRHTTEEV 574
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
L AC+EAIEP+RAA TS LR QV+NDL+EGLK H+WFTGFDIA+ELP + S+ EWIKLAK
Sbjct: 575 LDACVEAIEPNRAALTSDLRKQVMNDLMEGLKDHNWFTGFDIANELPKKFSLREWIKLAK 634
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E +ATVFIAVHGGIGEDG LQSLL+AEGVPYTGPG +ASK CMDKVATS+A+NHLA+LG+
Sbjct: 635 EVKATVFIAVHGGIGEDGRLQSLLDAEGVPYTGPGALASKICMDKVATSVAVNHLANLGI 694
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LTINK+V RK+DL PI DIWH+LT KLQC+TLCVKPARDGCSTGVARL C+ DL +Y+
Sbjct: 695 LTINKEVWRKDDLSNKPINDIWHDLTQKLQCETLCVKPARDGCSTGVARLRCSNDLAIYI 754
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KALE+ LLRIPPNS S+AHGMIEMPNPPPE+LIFEPF+ETDEI+ SS+ N+ MWK
Sbjct: 755 KALEDSLLRIPPNSLSKAHGMIEMPNPPPELLIFEPFIETDEIIVSSKVKNETGHGFMWK 814
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
GNSRWVEITVGVIGK GSMHSL PSVTVKE+GDILSLEEKFQGGTGINLTPPP SIMS
Sbjct: 815 GNSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPLSIMS 872
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 117/317 (36%), Gaps = 72/317 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE VP+ G G DK S + L G +T+
Sbjct: 169 VFPVIHGRFGEDGGIQELLEKYNVPFVGTGSSECCQAFDKYKAS---SELRKHGFVTVPS 225
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ + + K+ + + + + + VKP R G S GV
Sbjct: 226 FLVQGYETNKSELSEWFRKHQLDPDTGKVVVKPTRGGSSIGV------------------ 267
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ A+G + + V+ EI+ S +K L +G S +
Sbjct: 268 ----------TVAYG------------VNDSLVKASEIM-SEGIDDKVLIELFLEGGSEF 304
Query: 606 VEITVGVIGKCGSMH-SLMPSVT---------VKESGDILSLEEKFQGGTGINLTPPPAS 655
I + V S +L+P+ +KE+ I + K+ + PP
Sbjct: 305 TAIVLDVGSSSDSFPVALLPTEVELQFLGENDLKENDAIFNYRRKYLPTQQVAYHTPPR- 363
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDA----------------FVNVDNGEVLIIE 699
+ ++ ++ ++ L L+ F+RID F ++G ++ +
Sbjct: 364 -FPLDVIENIRKGASILFQQLHLQDFARIDGWFLPDSGCKLSSSESEFGRSESGTIIFTD 422
Query: 700 VNTVPGMTPSTVLIHQA 716
+N + GM ++ L QA
Sbjct: 423 INMISGMEQTSFLFQQA 439
>gi|357115958|ref|XP_003559752.1| PREDICTED: uncharacterized protein LOC100840063 [Brachypodium
distachyon]
Length = 885
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/741 (66%), Positives = 589/741 (79%), Gaps = 7/741 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ QGF+TVP+FL++ ++ +SEL WF + L+ +GKVVVKPTRAGSSIGV VAYG
Sbjct: 148 LNAQGFLTVPNFLVEKDKLAKSELEQWFQSINLNKENGKVVVKPTRAGSSIGVVVAYGAN 207
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D+ +KA+GII EGIDD+V+VE+FLEGG EFTAIV+DVG+ PVVLLPTEVELQ G+
Sbjct: 208 DAAEKAEGIISEGIDDKVIVEVFLEGGCEFTAIVIDVGTANTSEPVVLLPTEVELQSSGN 267
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D++E D IFNYRRKYLPT+QV YHTPPRFP VI IR+G SLLF+ LGL DFARIDGW
Sbjct: 268 NDIQE-DTIFNYRRKYLPTRQVTYHTPPRFPPEVIGCIRQGVSLLFRHLGLRDFARIDGW 326
Query: 181 FLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
FLP+ SS E ++G+TE+GT+LFTDINLISGMEQTSFLFQQASKVGFSHS ILRT
Sbjct: 327 FLPTPVSTLSSGENGGRFGNTEYGTVLFTDINLISGMEQTSFLFQQASKVGFSHSRILRT 386
Query: 239 IIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLM 298
I+ HACSRFP+L N+ + L + +K E + ++ FVIFGGDTSERQVSLM
Sbjct: 387 IVQHACSRFPSLVPCNNSWTALSRKMQSAKQAEVIQNGTHKQKAFVIFGGDTSERQVSLM 446
Query: 299 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 358
SGTNVWLNLQ F D++VTPCLL + +G ++ SSR VW+LPYSLVLRHTTE
Sbjct: 447 SGTNVWLNLQGFEDLDVTPCLLTPA----NGYSSSHNQDGESSRDVWTLPYSLVLRHTTE 502
Query: 359 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL 418
EV AAC+EAIEP+R TS LR+QV+ +L + L K WF GFDIADE P ++S+ +WI
Sbjct: 503 EVHAACLEAIEPERVEITSRLRDQVMKELEQALSKQDWFAGFDIADEQPTKYSLQQWIDH 562
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
KE +A VF+AVHGGIGEDGT+Q +LE+ GVPYTGPG +AS+TCMDKVATSLA++HLA
Sbjct: 563 VKEAKAVVFVAVHGGIGEDGTIQLMLESAGVPYTGPGPIASRTCMDKVATSLAVDHLAGY 622
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
G+ TI K VR ++LL + +VDIW++L SKLQ +T+CVKPARDGCSTGVARLCC EDL V
Sbjct: 623 GIHTIPKGVRETDELLSSSLVDIWNDLKSKLQTETVCVKPARDGCSTGVARLCCPEDLEV 682
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
YV AL L R+P N SRAHG+IEMP PPPE LIFEPF+ETDEI+ S++S + +A L+
Sbjct: 683 YVTALRRKLQRLPANCLSRAHGVIEMPVPPPESLIFEPFIETDEIIISNKSRDDSARHLV 742
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
WKG W+E+TVGV+GKCG MHSL PS+TVKESGDILSLEEKFQGGTGINLTPPPA+IMS
Sbjct: 743 WKGEKEWLEVTVGVVGKCGEMHSLNPSITVKESGDILSLEEKFQGGTGINLTPPPATIMS 802
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+AL KCK IE++AN L LEGFSRIDAFVNV NGEVL+IEVNTVPGMTPSTVLIHQAL+
Sbjct: 803 EDALRKCKSCIEMMANTLGLEGFSRIDAFVNVRNGEVLLIEVNTVPGMTPSTVLIHQALT 862
Query: 719 EQPPMYPHQFFRKVLDLGSER 739
E PP+YPH+FFR +LDL R
Sbjct: 863 EDPPIYPHKFFRTLLDLAFAR 883
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 127/335 (37%), Gaps = 75/335 (22%)
Query: 410 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 469
S++E+ + N VF +HG GEDG++Q LLE VP+ G + DK + S
Sbjct: 86 RSLSEFTEHLAANVDIVFPVIHGKFGEDGSIQELLEKTNVPFVGTPSNECRRAFDKHSAS 145
Query: 470 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529
+ LN G LT+ + K+ L K+ + + + + + VKP R G S GV
Sbjct: 146 IELNA---QGFLTVPNFLVEKDKLAKSELEQWFQSINLNKENGKVVVKPTRAGSSIGVVV 202
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
A D + +A G+I + +I E F+E
Sbjct: 203 AYGAND------------------AAEKAEGIIS--EGIDDKVIVEVFLE---------- 232
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHS--LMPS-VTVKESGD-------ILSLEE 639
G + I + V G + L+P+ V ++ SG+ I +
Sbjct: 233 -----------GGCEFTAIVIDV-GTANTSEPVVLLPTEVELQSSGNNDIQEDTIFNYRR 280
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA------------- 686
K+ + PP E + +Q + L+ L L F+RID
Sbjct: 281 KYLPTRQVTYHTPPR--FPPEVIGCIRQGVSLLFRHLGLRDFARIDGWFLPTPVSTLSSG 338
Query: 687 -----FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F N + G VL ++N + GM ++ L QA
Sbjct: 339 ENGGRFGNTEYGTVLFTDINLISGMEQTSFLFQQA 373
>gi|42572325|ref|NP_974258.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
gi|332641163|gb|AEE74684.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
Length = 937
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/739 (68%), Positives = 594/739 (80%), Gaps = 16/739 (2%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GF+TVP++L+QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV
Sbjct: 213 LKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVN 272
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G
Sbjct: 273 DSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGI 332
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW
Sbjct: 333 GDPKE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGW 391
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+L ++++ S G T+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+
Sbjct: 392 YLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIV 451
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
ACSRFP+L YN S L S+ L E ++VFVIFGGDTSERQVS+MSG
Sbjct: 452 HRACSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSG 505
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVW+NLQ + D+ VTPCLL+ S+ S G +N+ + R VW LPYS+VLRHT EEV
Sbjct: 506 TNVWVNLQRYVDLNVTPCLLSPSLSNSLGASSNLDN-----REVWVLPYSVVLRHTAEEV 560
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
LAAC+EA+EP RA FTS L+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AK
Sbjct: 561 LAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAK 620
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E QATVFIAVHGGIGEDGTLQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+
Sbjct: 621 EAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGI 680
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
TI+KDV+R ED++ ++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV
Sbjct: 681 HTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYV 740
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+AL++C+ RIPPN+ S+ HGMIEMPNP PE LIFEPFVETDEI+ SS K +L WK
Sbjct: 741 QALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWK 796
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G RWVE+TVGVIGK GSMHSL PS+TVKESGDILSLEEKFQGGTGINLTPPP +IMS E
Sbjct: 797 GRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMSKE 856
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
AL++CKQ IELIA L LEGFSRIDAFV+V+ GEVL+IEVNTVPGMTPSTVLI QAL+EQ
Sbjct: 857 ALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALAEQ 916
Query: 721 PPMYPHQFFRKVLDLGSER 739
PPMYP QFFR +L L ++R
Sbjct: 917 PPMYPPQFFRTLLHLATQR 935
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 17/179 (9%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H + + I+PD AF ++ + + +D K S GF
Sbjct: 101 VLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFS------- 151
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
S++E + VF +HG GEDG +Q LLE+ +P+ G G DK
Sbjct: 152 --SLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEA 209
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
SL L +LG +T+ + + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 210 SL---ELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265
>gi|242047420|ref|XP_002461456.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
gi|241924833|gb|EER97977.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
Length = 945
Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/741 (65%), Positives = 595/741 (80%), Gaps = 6/741 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ QGF+TVP+FL++ ++ + EL WF T L+ +GKV+VKPTRAGSSIGV VAYGV
Sbjct: 207 LNAQGFLTVPNFLVEKDKLAKPELEAWFKTVNLNKENGKVIVKPTRAGSSIGVVVAYGVN 266
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D+ +KA+ II EGIDD+V++E+FLEGG+EFTAIV+DVG+ + PVVLLPTEVELQ+ S
Sbjct: 267 DAAQKAEEIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSQPVVLLPTEVELQYSNS 326
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G SLLF+R GL D+AR+DGW
Sbjct: 327 SDTDE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFRRFGLHDYARVDGW 385
Query: 181 FLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
FLPS SS+E K+G+T++GT+LFTDINLISGMEQTSFLFQQAS VGFSHS ILRT
Sbjct: 386 FLPSPVASLSSAENSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQASAVGFSHSRILRT 445
Query: 239 IIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLM 298
++ HACSRFP+L N+ + L + SK A++K ++VFVIFGGDTSERQVSLM
Sbjct: 446 VVQHACSRFPSLVPCNNAWTALSRKLQPSKQIGAIHKGTSRQKVFVIFGGDTSERQVSLM 505
Query: 299 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 358
SGTNVWLNLQ F+D++VTPCLLA + S D +D +SR VW+LPYSLVLRHTTE
Sbjct: 506 SGTNVWLNLQGFDDLDVTPCLLAPANGYFSSHDQVFSD---TSREVWTLPYSLVLRHTTE 562
Query: 359 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL 418
EV AAC+EA EP+R T LR+QV+N+L L KH WF GFDIA E P+++S+ +WI
Sbjct: 563 EVHAACVEATEPERVKMTKRLRDQVMNELGPALSKHDWFAGFDIAYEQPIKYSLQQWIDH 622
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
KE +A VFIAVHGGIGEDGT+Q+LLE+ GVP+TGPG +AS+TC+DKVA+SLA++HLA
Sbjct: 623 VKETEAVVFIAVHGGIGEDGTIQTLLESAGVPFTGPGPIASRTCIDKVASSLAVDHLASY 682
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
GV TI KDVR E++LK+ +VDIW+EL +KL+ +T+CVKPARDGCSTGVARLCC +DL V
Sbjct: 683 GVHTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCSTGVARLCCPKDLEV 742
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
Y AL +P N SRAHG+IEMP PPPE LIFEPF+ETDEI+ S++ N +A L+
Sbjct: 743 YTNALRRKFQHLPANCLSRAHGVIEMPVPPPESLIFEPFIETDEIIISNKLGNGSARHLV 802
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
WKG + W+EITVGV+GK G MHSL PS+TVKESGDILSLEEKFQGGTGINLTPPPA+IM
Sbjct: 803 WKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSLEEKFQGGTGINLTPPPATIMG 862
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+AL +CK+ IE++ANAL LEGFSRIDAFVNV +GEVL+IEVNTVPGMTPSTVLIHQAL+
Sbjct: 863 EDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQALA 922
Query: 719 EQPPMYPHQFFRKVLDLGSER 739
E+PP+YPH+FFR +LDL R
Sbjct: 923 EEPPVYPHKFFRTLLDLAFTR 943
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/400 (23%), Positives = 144/400 (36%), Gaps = 97/400 (24%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAFT---SHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H E L I+ AF + L + +D K S GFD
Sbjct: 95 VLDHIQGEDLVVRCYYIDSAMKAFAISPAQLYSNTPSDF--DFKLESLAQGFD------- 145
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
S++++ + N VF +HG GEDG +Q LLE VP+ G + DK
Sbjct: 146 --SLSDFAEHLAINVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECERAFDKHNA 203
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTS-KLQCKTLCVKPARDGCSTGV 527
SL LN G LT+ + K+ L K P ++ W + + + + VKP R G S GV
Sbjct: 204 SLELNA---QGFLTVPNFLVEKDKLAK-PELEAWFKTVNLNKENGKVIVKPTRAGSSIGV 259
Query: 528 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS 587
A + + EE + + G+ + +I E F+E
Sbjct: 260 ---VVAYGVNDAAQKAEEII----------SEGIDDK-------VIIEVFLE-------- 291
Query: 588 QSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV-------------KESGDI 634
G + + I V V G+ ++ P V + + I
Sbjct: 292 -------------GGTEFTAIVVDV----GTANNSQPVVLLPTEVELQYSNSSDTDEDTI 334
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA-------- 686
+ +K+ + PP E +D +Q I L+ L ++R+D
Sbjct: 335 FNYRKKYLPSRQVAYHSPPR--FPAEVIDCIRQGISLLFRRFGLHDYARVDGWFLPSPVA 392
Query: 687 ----------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F N G VL ++N + GM ++ L QA
Sbjct: 393 SLSSAENSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQA 432
>gi|218200303|gb|EEC82730.1| hypothetical protein OsI_27428 [Oryza sativa Indica Group]
Length = 946
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/741 (64%), Positives = 596/741 (80%), Gaps = 6/741 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ QGF+TVP+FL++ ++ +S+L WF + LD +GKVVVKPT AGSSIGV VAYG
Sbjct: 208 LNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIGVVVAYGAN 267
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D+ +KA+GII EGIDD+V++E+FLEGG+EFTAIV+DVG+ + PVVLLPTEVELQ +
Sbjct: 268 DAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVVLLPTEVELQSSSN 327
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
+D++E D IFNYRRKYLPT+QVAYHTPPRFP VI+ IR+G S+LF+ LGL DFARIDGW
Sbjct: 328 IDIQE-DTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRCLGLRDFARIDGW 386
Query: 181 FLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
FLP+ S+E K+G+T++G +LFTDINL++GMEQTSFLFQQ+SKVGFSHS ILRT
Sbjct: 387 FLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSSKVGFSHSRILRT 446
Query: 239 IIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLM 298
++ HACSR+P+L ++ + L + +K EA+ K ++VFVIFGGDTSERQVSLM
Sbjct: 447 VVQHACSRYPSLVPCSNAWTALSRKIQAAKQAEAIQKGTSKKKVFVIFGGDTSERQVSLM 506
Query: 299 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 358
SGTNVWLNLQ F+D++VTPCLL S SS + N+ + SR VW+LPYSLVLRHT E
Sbjct: 507 SGTNVWLNLQGFDDLDVTPCLLTSGNGYSSFHNQNM---NGISRDVWTLPYSLVLRHTIE 563
Query: 359 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL 418
EV AACIEAI+P+R TS LR+QV+N+L + L K+ WF GFDIAD+ P+++S+ +WI
Sbjct: 564 EVNAACIEAIDPERMELTSRLRDQVMNELGQSLSKYDWFAGFDIADKQPIKYSLQQWINH 623
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
KE QA VFIAVHGGIGEDGT+QSLL + GVPYTGPG +AS+TCMDKVATSLA++HLA
Sbjct: 624 VKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQIASRTCMDKVATSLAVSHLASY 683
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
GV TI KD+R E++LK+ DIW++L +KLQ +T+CVKPARDGCSTGVARLCC +DL V
Sbjct: 684 GVHTIPKDLRATEEILKSSPDDIWNDLKAKLQTETVCVKPARDGCSTGVARLCCPKDLEV 743
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
Y ALE L R+P N SRAHG+IEMP PPE LIFEPF+ETDEI+ S++S + + L+
Sbjct: 744 YANALERKLQRMPANCLSRAHGVIEMPVSPPESLIFEPFIETDEIIISTKSVDDSTRHLV 803
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
WKG ++W+E+TVGV+GK G M SL PS+TVKESGDILSLEEKFQGGTGINLTPPP++IMS
Sbjct: 804 WKGENKWLEVTVGVVGKRGEMLSLNPSITVKESGDILSLEEKFQGGTGINLTPPPSTIMS 863
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
EAL KCK IE +AN L LEGFSRIDAFVNV NGE+L+IEVNTVPGMTPSTVLIHQAL+
Sbjct: 864 EEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTPSTVLIHQALT 923
Query: 719 EQPPMYPHQFFRKVLDLGSER 739
E+PP+YPH+FFR +LDL R
Sbjct: 924 EKPPIYPHKFFRTLLDLAFAR 944
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 127/338 (37%), Gaps = 81/338 (23%)
Query: 410 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM---DKV 466
S+ ++ + N VF +HG GEDG +Q LLE VP+ G SK C+ DK
Sbjct: 146 QSLFDFAQHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVG---TPSKNCLLAFDKY 202
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
SL LN G LT+ + K+ L K+ + + + + + + VKP G S G
Sbjct: 203 NASLELNA---QGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIG 259
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
V A D + +A G+I + +I E F+E
Sbjct: 260 VVVAYGAND------------------AAEKAEGIIS--EGIDDKVIIEVFLE------- 292
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS--LMPSVTVKESGDILSLEE----- 639
G + + I V V G + L+P+ +S + ++E
Sbjct: 293 --------------GGTEFTAIVVDV-GTANNSEPVVLLPTEVELQSSSNIDIQEDTIFN 337
Query: 640 ---KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA---------- 686
K+ + PP +E +D +Q + ++ L L F+RID
Sbjct: 338 YRRKYLPTRQVAYHTPPR--FPSEVIDCIRQGVSILFRCLGLRDFARIDGWFLPTPVTSL 395
Query: 687 --------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F N G VL ++N + GM ++ L Q+
Sbjct: 396 PSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQS 433
>gi|115474235|ref|NP_001060716.1| Os07g0691200 [Oryza sativa Japonica Group]
gi|33146883|dbj|BAC79881.1| unknown protein [Oryza sativa Japonica Group]
gi|50509294|dbj|BAD30601.1| unknown protein [Oryza sativa Japonica Group]
gi|113612252|dbj|BAF22630.1| Os07g0691200 [Oryza sativa Japonica Group]
gi|222637729|gb|EEE67861.1| hypothetical protein OsJ_25672 [Oryza sativa Japonica Group]
Length = 946
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/741 (64%), Positives = 596/741 (80%), Gaps = 6/741 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ QGF+TVP+FL++ ++ +S+L WF + LD +GKVVVKPT AGSSIGV VAYG
Sbjct: 208 LNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIGVVVAYGAN 267
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D+ +KA+GII EGIDD+V++E+FLEGG+EFTAIV+DVG+ + PVVLLPTEVELQ +
Sbjct: 268 DAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVVLLPTEVELQSSSN 327
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
+D++E D IFNYRRKYLPT+QVAYHTPPRFP VI+ IR+G S+LF+ LGL DFARIDGW
Sbjct: 328 IDIQE-DTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRCLGLRDFARIDGW 386
Query: 181 FLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
FLP+ S+E K+G+T++G +LFTDINL++GMEQTSFLFQQ+SKVGFSHS ILRT
Sbjct: 387 FLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSSKVGFSHSRILRT 446
Query: 239 IIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLM 298
++ HACSR+P+L ++ + L + +K EA+ K ++VFVIFGGDTSERQVSLM
Sbjct: 447 VVQHACSRYPSLVPCSNAWTALSRKIQAAKQAEAIQKGTSKKKVFVIFGGDTSERQVSLM 506
Query: 299 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 358
SGTNVWLNLQ F+D++VTPCLL S SS + N+ + SR VW+LPYSLVLRHT E
Sbjct: 507 SGTNVWLNLQGFDDLDVTPCLLTSGNGYSSFHNQNM---NGISRDVWTLPYSLVLRHTIE 563
Query: 359 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL 418
EV AACIEAI+P+R TS LR+QV+N+L + L K+ WF GFDIAD+ P+++S+ +WI
Sbjct: 564 EVNAACIEAIDPERMELTSRLRDQVMNELGQSLSKYDWFAGFDIADKQPIKYSLQQWINH 623
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
KE QA VFIAVHGGIGEDGT+QSLL + GVPYTGPG +AS+TCMDKVATSLA++HLA
Sbjct: 624 VKEAQAVVFIAVHGGIGEDGTIQSLLGSAGVPYTGPGQIASRTCMDKVATSLAVSHLASY 683
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
GV TI KD+R E++LK+ DIW++L +KLQ +T+CVKPARDGCSTGVARLCC +DL V
Sbjct: 684 GVHTIPKDLRATEEILKSSPDDIWNDLKAKLQTETVCVKPARDGCSTGVARLCCPKDLEV 743
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
Y ALE L R+P N SRAHG+IEMP PPE LIFEPF+ETDEI+ S++S + + L+
Sbjct: 744 YANALERKLQRMPANCLSRAHGVIEMPVSPPESLIFEPFIETDEIIISTKSVDDSTRHLV 803
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
WKG ++W+E+TVGV+GK G M SL PS+TVKESGDILSLEEKFQGGTGINLTPPP++IMS
Sbjct: 804 WKGENKWLEVTVGVVGKRGEMLSLNPSITVKESGDILSLEEKFQGGTGINLTPPPSTIMS 863
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
EAL KCK IE +AN L LEGFSRIDAFVNV NGE+L+IEVNTVPGMTPSTVLIHQAL+
Sbjct: 864 EEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTPSTVLIHQALT 923
Query: 719 EQPPMYPHQFFRKVLDLGSER 739
E+PP+YPH+FFR +LDL R
Sbjct: 924 EKPPIYPHKFFRTLLDLAFAR 944
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 127/338 (37%), Gaps = 81/338 (23%)
Query: 410 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM---DKV 466
S+ ++ + N VF +HG GEDG +Q LLE VP+ G SK C+ DK
Sbjct: 146 QSLFDFAQHLAANVDIVFPVIHGKFGEDGGIQELLEKANVPFVG---TPSKNCLLAFDKY 202
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
SL LN G LT+ + K+ L K+ + + + + + + VKP G S G
Sbjct: 203 NASLELNA---QGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSAGSSIG 259
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
V A D + +A G+I + +I E F+E
Sbjct: 260 VVVAYGAND------------------AAEKAEGIIS--EGIDDKVIIEVFLE------- 292
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS--LMPSVTVKESGDILSLEE----- 639
G + + I V V G + L+P+ +S + ++E
Sbjct: 293 --------------GGTEFTAIVVDV-GTANNSEPVVLLPTEVELQSSSNIDIQEDTIFN 337
Query: 640 ---KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA---------- 686
K+ + PP +E +D +Q + ++ L L F+RID
Sbjct: 338 YRRKYLPTRQVAYHTPPR--FPSEVIDCIRQGVSILFRCLGLRDFARIDGWFLPTPVTSL 395
Query: 687 --------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F N G VL ++N + GM ++ L Q+
Sbjct: 396 PSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQS 433
>gi|414591253|tpg|DAA41824.1| TPA: hypothetical protein ZEAMMB73_402779 [Zea mays]
Length = 950
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/737 (64%), Positives = 589/737 (79%), Gaps = 6/737 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ QGF+TVP+FL++ ++ + EL WF T L+ +GK +VKPTRAGSSIGV VAYGV
Sbjct: 212 LNAQGFLTVPNFLVEKDKLAKPELEAWFQTVNLNKENGKTIVKPTRAGSSIGVVVAYGVN 271
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D+ +KA+ II EGIDD+V++E+F+EGG+EFTAIV+DVG + PVVLLPTEVELQ+ +
Sbjct: 272 DAAQKAEEIISEGIDDKVIIEVFIEGGTEFTAIVVDVGIANNSEPVVLLPTEVELQYSNN 331
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G SLLF RLGL D+ARIDGW
Sbjct: 332 SDTKE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFCRLGLHDYARIDGW 390
Query: 181 FLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
FLPS +E K+G+T++G++LFTDINLISGMEQTSFLFQQAS VGFSHS ILRT
Sbjct: 391 FLPSPVASLPPAENSDKFGNTKYGSVLFTDINLISGMEQTSFLFQQASAVGFSHSRILRT 450
Query: 239 IIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLM 298
++ HACSRFP+L N+ + L + SK EA++K ++VFVIFGGDTSERQVSLM
Sbjct: 451 VVQHACSRFPSLLPCNNAWTALSRKLQPSKQVEAIHKGTSRQKVFVIFGGDTSERQVSLM 510
Query: 299 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 358
SGTNVWLNLQ F+D++VTPCLLA + S D + +D SSR VW+LPYSLVLRHTTE
Sbjct: 511 SGTNVWLNLQGFDDLDVTPCLLAPAHGYFSSHDQDFSD---SSREVWTLPYSLVLRHTTE 567
Query: 359 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL 418
EV AAC+EA EP+R T LR+QV+N+L L KH WF GFDIA E P+++S+ +WI
Sbjct: 568 EVHAACVEATEPERVEITKRLRDQVMNELGSALSKHDWFAGFDIAYEQPIKYSLQQWIDH 627
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
KE +A VFIAVHGGIGEDGT+Q+LLE+ GVPYTGPG +AS+TC+DKVA+SLA++HLA
Sbjct: 628 VKETEAVVFIAVHGGIGEDGTIQTLLESAGVPYTGPGPIASRTCIDKVASSLAVDHLASY 687
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
G+ I KDVR E++L + +VDIW+EL +KL+ +T+CVKPARDGCSTGVARLCC +DL V
Sbjct: 688 GIRIIPKDVRATEEVLNSSLVDIWNELKAKLETETVCVKPARDGCSTGVARLCCPKDLEV 747
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
Y AL +P N SRAHG+IEMP P PE LIFEPF+ETDEI+ +++ + +A L+
Sbjct: 748 YTNALRRKFQHLPANCLSRAHGVIEMPVPSPESLIFEPFIETDEIIIANKLEDGSARHLV 807
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
WKG + W+EITVGV+GK G MHSL PS+TVKESGDILSLEEKFQGGTGINLTPPPA+IM
Sbjct: 808 WKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSLEEKFQGGTGINLTPPPATIMG 867
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+AL +CK+ IE +ANAL LEGFSRIDAFVNV +GEVL+IEVNTVPGMTPSTVLIHQAL+
Sbjct: 868 EDALQRCKKSIETMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQALA 927
Query: 719 EQPPMYPHQFFRKVLDL 735
E+PP+YPH+FFR +LDL
Sbjct: 928 EEPPVYPHRFFRTLLDL 944
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 149/397 (37%), Gaps = 91/397 (22%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAFT---SHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H E L C I+ AF + L + +D K S FD
Sbjct: 100 VLDHIQGEDLVVCCYYIDCAMKAFAISPAQLYSNTPSDF--DFKLESLAQEFD------- 150
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
S++++ + N VF +HG GEDG +Q LLE VP+ G + DK
Sbjct: 151 --SLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECQRAFDKHNA 208
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT--SKLQCKTLCVKPARDGCSTG 526
SL LN G LT+ + K+ L K P ++ W + +K KT+ VKP R G S G
Sbjct: 209 SLELNA---QGFLTVPNFLVEKDKLAK-PELEAWFQTVNLNKENGKTI-VKPTRAGSSIG 263
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
V A + + EE + + G+ + +I E F+E
Sbjct: 264 VV---VAYGVNDAAQKAEEII----------SEGIDDK-------VIIEVFIE------- 296
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGV-IGKCGSMHSLMPS-VTVKESGD-------ILSL 637
G + + I V V I L+P+ V ++ S + I +
Sbjct: 297 --------------GGTEFTAIVVDVGIANNSEPVVLLPTEVELQYSNNSDTKEDTIFNY 342
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA----------- 686
+K+ + PP E +D +Q I L+ L L ++RID
Sbjct: 343 RKKYLPSRQVAYHSPPR--FPAEVIDCIRQGISLLFCRLGLHDYARIDGWFLPSPVASLP 400
Query: 687 -------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F N G VL ++N + GM ++ L QA
Sbjct: 401 PAENSDKFGNTKYGSVLFTDINLISGMEQTSFLFQQA 437
>gi|42572327|ref|NP_974259.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
gi|332641165|gb|AEE74686.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
Length = 845
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/642 (66%), Positives = 509/642 (79%), Gaps = 16/642 (2%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GF+TVP++L+QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV
Sbjct: 213 LKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVN 272
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G
Sbjct: 273 DSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGI 332
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW
Sbjct: 333 GDPKE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGW 391
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+L ++++ S G T+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+
Sbjct: 392 YLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIV 451
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
ACSRFP+L YN S L S+ L E ++VFVIFGGDTSERQVS+MSG
Sbjct: 452 HRACSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSG 505
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVW+NLQ + D+ VTPCLL+ S+ S G +N+ + R VW LPYS+VLRHT EEV
Sbjct: 506 TNVWVNLQRYVDLNVTPCLLSPSLSNSLGASSNLDN-----REVWVLPYSVVLRHTAEEV 560
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
LAAC+EA+EP RA FTS L+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AK
Sbjct: 561 LAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAK 620
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E QATVFIAVHGGIGEDGTLQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+
Sbjct: 621 EAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGI 680
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
TI+KDV+R ED++ ++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV
Sbjct: 681 HTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYV 740
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+AL++C+ RIPPN+ S+ HGMIEMPNP PE LIFEPFVETDEI+ SS K +L WK
Sbjct: 741 QALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWK 796
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
G RWVE+TVGVIGK GSMHSL PS+TVKESGDILSLEEKFQ
Sbjct: 797 GRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQ 838
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 17/179 (9%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H + + I+PD AF ++ + + +D K S GF EL
Sbjct: 101 VLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFSSLSELA- 157
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
H ++ VF +HG GEDG +Q LLE+ +P+ G G DK
Sbjct: 158 EHLVSA--------VDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEA 209
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
SL L +LG +T+ + + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 210 SL---ELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265
>gi|26452707|dbj|BAC43436.1| unknown protein [Arabidopsis thaliana]
Length = 844
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/642 (66%), Positives = 509/642 (79%), Gaps = 17/642 (2%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GF+TVP++L+QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV
Sbjct: 213 LKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVN 272
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G
Sbjct: 273 DSIKKAT-LILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGI 331
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW
Sbjct: 332 GDPKE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGW 390
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+L ++++ S G T+ G I+FTDINLISGM+QTSFLFQQASKVGFSHSNILRTI+
Sbjct: 391 YLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMKQTSFLFQQASKVGFSHSNILRTIV 450
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
ACSRFP+L YN S L S+ L E ++VFVIFGGDTSERQVS+MSG
Sbjct: 451 HRACSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSG 504
Query: 301 TNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360
TNVW+NLQ + D+ VTPCLL+ S+ S G +N+ + R VW LPYS+VLRHT EEV
Sbjct: 505 TNVWVNLQRYVDLNVTPCLLSPSLSNSLGASSNLDN-----REVWVLPYSVVLRHTAEEV 559
Query: 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAK 420
LAAC+EA+EP RA FTS L+ QV+ DL++G K SWF GFDI DELP ++S+ EWIK AK
Sbjct: 560 LAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAK 619
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E QATVFIAVHGGIGEDGTLQ LLE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+
Sbjct: 620 EAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGI 679
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
TI+KDV+R ED++ ++W EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV
Sbjct: 680 HTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYV 739
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+AL++C+ RIPPN+ S+ HGMIEMPNP PE LIFEPFVETDEI+ SS K +L WK
Sbjct: 740 QALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWK 795
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
G RWVE+TVGVIGK GSMHSL PS+TVKESGDILSLEEKFQ
Sbjct: 796 GRRRWVEMTVGVIGKHGSMHSLSPSLTVKESGDILSLEEKFQ 837
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 17/179 (9%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H + + I+PD AF ++ + + +D K S GF EL
Sbjct: 101 VLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFSSLSELA- 157
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
H ++ VF +HG GEDG +Q LLE+ +P+ G G DK
Sbjct: 158 EHLVSA--------VDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEA 209
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
SL L +LG +T+ + + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 210 SL---ELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265
>gi|414591254|tpg|DAA41825.1| TPA: hypothetical protein ZEAMMB73_402779 [Zea mays]
Length = 853
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/645 (62%), Positives = 505/645 (78%), Gaps = 6/645 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ QGF+TVP+FL++ ++ + EL WF T L+ +GK +VKPTRAGSSIGV VAYGV
Sbjct: 212 LNAQGFLTVPNFLVEKDKLAKPELEAWFQTVNLNKENGKTIVKPTRAGSSIGVVVAYGVN 271
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D+ +KA+ II EGIDD+V++E+F+EGG+EFTAIV+DVG + PVVLLPTEVELQ+ +
Sbjct: 272 DAAQKAEEIISEGIDDKVIIEVFIEGGTEFTAIVVDVGIANNSEPVVLLPTEVELQYSNN 331
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G SLLF RLGL D+ARIDGW
Sbjct: 332 SDTKE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFCRLGLHDYARIDGW 390
Query: 181 FLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
FLPS +E K+G+T++G++LFTDINLISGMEQTSFLFQQAS VGFSHS ILRT
Sbjct: 391 FLPSPVASLPPAENSDKFGNTKYGSVLFTDINLISGMEQTSFLFQQASAVGFSHSRILRT 450
Query: 239 IIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLM 298
++ HACSRFP+L N+ + L + SK EA++K ++VFVIFGGDTSERQVSLM
Sbjct: 451 VVQHACSRFPSLLPCNNAWTALSRKLQPSKQVEAIHKGTSRQKVFVIFGGDTSERQVSLM 510
Query: 299 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 358
SGTNVWLNLQ F+D++VTPCLLA + S D + +D SSR VW+LPYSLVLRHTTE
Sbjct: 511 SGTNVWLNLQGFDDLDVTPCLLAPAHGYFSSHDQDFSD---SSREVWTLPYSLVLRHTTE 567
Query: 359 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL 418
EV AAC+EA EP+R T LR+QV+N+L L KH WF GFDIA E P+++S+ +WI
Sbjct: 568 EVHAACVEATEPERVEITKRLRDQVMNELGSALSKHDWFAGFDIAYEQPIKYSLQQWIDH 627
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
KE +A VFIAVHGGIGEDGT+Q+LLE+ GVPYTGPG +AS+TC+DKVA+SLA++HLA
Sbjct: 628 VKETEAVVFIAVHGGIGEDGTIQTLLESAGVPYTGPGPIASRTCIDKVASSLAVDHLASY 687
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
G+ I KDVR E++L + +VDIW+EL +KL+ +T+CVKPARDGCSTGVARLCC +DL V
Sbjct: 688 GIRIIPKDVRATEEVLNSSLVDIWNELKAKLETETVCVKPARDGCSTGVARLCCPKDLEV 747
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
Y AL +P N SRAHG+IEMP P PE LIFEPF+ETDEI+ +++ + +A L+
Sbjct: 748 YTNALRRKFQHLPANCLSRAHGVIEMPVPSPESLIFEPFIETDEIIIANKLEDGSARHLV 807
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 643
WKG + W+EITVGV+GK G MHSL PS+TVKESGDILSLEEKFQG
Sbjct: 808 WKGENDWLEITVGVVGKRGEMHSLNPSITVKESGDILSLEEKFQG 852
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 149/397 (37%), Gaps = 91/397 (22%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAFT---SHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H E L C I+ AF + L + +D K S FD
Sbjct: 100 VLDHIQGEDLVVCCYYIDCAMKAFAISPAQLYSNTPSDF--DFKLESLAQEFD------- 150
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
S++++ + N VF +HG GEDG +Q LLE VP+ G + DK
Sbjct: 151 --SLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECQRAFDKHNA 208
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT--SKLQCKTLCVKPARDGCSTG 526
SL LN G LT+ + K+ L K P ++ W + +K KT+ VKP R G S G
Sbjct: 209 SLELNA---QGFLTVPNFLVEKDKLAK-PELEAWFQTVNLNKENGKTI-VKPTRAGSSIG 263
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
V A + + EE + + G+ + +I E F+E
Sbjct: 264 VV---VAYGVNDAAQKAEEII----------SEGIDDK-------VIIEVFIE------- 296
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGV-IGKCGSMHSLMPS-VTVKESGD-------ILSL 637
G + + I V V I L+P+ V ++ S + I +
Sbjct: 297 --------------GGTEFTAIVVDVGIANNSEPVVLLPTEVELQYSNNSDTKEDTIFNY 342
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA----------- 686
+K+ + PP E +D +Q I L+ L L ++RID
Sbjct: 343 RKKYLPSRQVAYHSPPR--FPAEVIDCIRQGISLLFCRLGLHDYARIDGWFLPSPVASLP 400
Query: 687 -------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F N G VL ++N + GM ++ L QA
Sbjct: 401 PAENSDKFGNTKYGSVLFTDINLISGMEQTSFLFQQA 437
>gi|302803947|ref|XP_002983726.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
gi|300148563|gb|EFJ15222.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
Length = 857
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/742 (52%), Positives = 524/742 (70%), Gaps = 44/742 (5%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ GF+T+PSFL+ E++++ L WF N L+P+S +VVVKP ++GSSIGVTVA+G+
Sbjct: 157 LSRHGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLD 216
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ ++ A+ ++ EGIDDR+VVE+FL+G +EFT I+LD GSG PV LLPTEVEL
Sbjct: 217 EVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVALLPTEVELLHGDG 276
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
+ EK IFNYRRKYLPT+QV+YHTPPRFP+ I SIR GAS LF L L DFAR+DGW
Sbjct: 277 QSIGEK--IFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLLNLRDFARVDGW 334
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
LP S+ S++ ++F+D+NL+SGMEQTSFLFQQA++VG SH ++LR ++
Sbjct: 335 LLPPSSSFNKSNDF--------LVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVL 386
Query: 241 GHACSRFPNLASYNSVSSH-LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMS 299
A +R+P+L+++ V H + G SK R+V+V+FGG +SERQVSLMS
Sbjct: 387 NRARTRYPSLSNFPQVGLHGVDGSPQTSK-----------RKVYVLFGGGSSERQVSLMS 435
Query: 300 GTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359
GTNVWLNL+ D++V+P +LA S SR +W+LPY+ VLRHT EE
Sbjct: 436 GTNVWLNLRGCKDLDVSPFVLAPQSRGES----------PESRSIWALPYACVLRHTVEE 485
Query: 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA 419
V+ C+EA++P +A + L+ QV+++L K +++ +P + S++EWI+ A
Sbjct: 486 VVDGCLEALDPRFSAVSGSLKAQVMSELSSSGSK----VDYNVGSGVPTKLSMSEWIQHA 541
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
K++ A VFIAVHG IGE+G LQ +LEA+ +P+TG GV AS+ CMDK T ++ L+ G
Sbjct: 542 KDDDAIVFIAVHGDIGENGILQEMLEAKRIPFTGSGVKASRICMDKAVTGHTISPLSSNG 601
Query: 480 VLTINKDVRRKEDLLKT--PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
V + + V + +LL +W L KL+ ++CVKPA DGCSTGVARLCCA DLT
Sbjct: 602 VYSAKRVVYKTAELLHDCGDNSQLWLSLQDKLEDSSICVKPAADGCSTGVARLCCARDLT 661
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
VY+ AL+E L R+ P S + HG+IE+P P+ LIFEPF++TD+IL +S ++
Sbjct: 662 VYLTALKEKLPRLLPGSLGKPHGIIELPATIPDSLIFEPFIQTDDILVCEES------QI 715
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
W+G RWVEIT GVIGK G+MH+L PS+T+KESGDILSLEEKFQGGTG+NLTPPP I
Sbjct: 716 AWEGKHRWVEITAGVIGKKGAMHALHPSITLKESGDILSLEEKFQGGTGVNLTPPPPLIC 775
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
S EA+ C++RIEL+AN LQLEGF+RIDAF+NVD GEV++IEVNTVPGMTPSTVLIHQ L
Sbjct: 776 SEEAVRSCRERIELVANTLQLEGFARIDAFMNVDTGEVIVIEVNTVPGMTPSTVLIHQVL 835
Query: 718 SEQPPMYPHQFFRKVLDLGSER 739
+E P++P +FFR V+DLGS+R
Sbjct: 836 AETTPLFPREFFRAVVDLGSKR 857
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 414 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN 473
++++ K + VF +HG GEDG LQ LLE+ G+P+ G G A++ DK A
Sbjct: 99 DFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSAARCAFDKYE---AAK 155
Query: 474 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
L+ G +TI + ++ K +V+ + + VKPA+ G S GV
Sbjct: 156 ELSRHGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGV 209
>gi|302814744|ref|XP_002989055.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
gi|300143156|gb|EFJ09849.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
Length = 857
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/742 (52%), Positives = 523/742 (70%), Gaps = 44/742 (5%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ GF+T+PSFL+ E++++ L WF N L+P+S +VVVKP ++GSSIGVTVA+G+
Sbjct: 157 LSRFGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGVTVAHGLD 216
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ ++ A+ ++ EGIDDR+VVE+FL+G +EFT I+LD GSG PV LLPTEVEL
Sbjct: 217 EVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVALLPTEVELLHADG 276
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
+ EK IFNYRRKYLPT+QV+YHTPPRFP+ I SIR GAS LF L L DFAR+DGW
Sbjct: 277 QSIGEK--IFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLLNLRDFARVDGW 334
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
LP S+ S++ ++F+D+NL+SGMEQTSFLFQQA++VG SH ++LR ++
Sbjct: 335 LLPPSSSFNKSNDF--------LVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLRLVL 386
Query: 241 GHACSRFPNLASYNSVSSH-LPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMS 299
A +R+P+L+++ V H + G SK R+V+V+FGG +SERQVSLMS
Sbjct: 387 NRARTRYPSLSNFPQVGLHEVDGTPQTSK-----------RKVYVLFGGGSSERQVSLMS 435
Query: 300 GTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359
GTNVWLNL+ D++V+P +L S SR +W+LPY+ VLRHT EE
Sbjct: 436 GTNVWLNLRGCKDLDVSPFVLVPQSRGES----------PESRSIWALPYACVLRHTVEE 485
Query: 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA 419
V+ C+EA++P +A + L+ QV+++L K +++ +P + S++EWI+ A
Sbjct: 486 VVDGCLEALDPGFSAVSGSLKAQVMSELSSSGSK----VDYNVGSGVPTKLSMSEWIQHA 541
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
K+ A VFIAVHG IGE+G LQ +LEA+G+P+TG GV AS+ CMDK T ++ L+ G
Sbjct: 542 KDEDAIVFIAVHGDIGENGILQEMLEAKGIPFTGSGVKASRICMDKAVTGHTISPLSSNG 601
Query: 480 VLTINKDVRRKEDLLKT--PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
V + + V + +LL +W L KL+ ++CVKPA DGCSTGVARLCCA DLT
Sbjct: 602 VYSAQRVVYKTAELLHDCGDNRQLWLSLQDKLEDSSICVKPAADGCSTGVARLCCARDLT 661
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
VY+ AL+E L R+ P S + HG+IE+P P+ LIFEPF++TD+IL +S ++
Sbjct: 662 VYLTALKEKLPRLLPGSLGKPHGIIELPTTIPDSLIFEPFIQTDDILVCEES------QI 715
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
W+G RWVEIT GVIGK G+MH+L PS+T+KESGDILSLEEKFQGGTG+NLTPPP I
Sbjct: 716 AWEGKHRWVEITAGVIGKKGAMHALHPSITLKESGDILSLEEKFQGGTGVNLTPPPPLIC 775
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
S EA+ C++RIEL+AN LQLEGF+RIDAF+NVD GEV++IEVNTVPGMTPSTVLIHQ L
Sbjct: 776 SEEAVRSCRERIELVANTLQLEGFARIDAFMNVDTGEVIVIEVNTVPGMTPSTVLIHQVL 835
Query: 718 SEQPPMYPHQFFRKVLDLGSER 739
+E P++P +FFR V+DLGS+R
Sbjct: 836 AETTPLFPREFFRAVVDLGSKR 857
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 414 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN 473
++++ K + VF +HG GEDG LQ LLE+ G+P+ G G A++ DK A
Sbjct: 99 DFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSAARCAFDKYE---AAK 155
Query: 474 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
L+ G +TI + ++ K +V+ + + VKPA+ G S GV
Sbjct: 156 ELSRFGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKSGSSIGV 209
>gi|168012025|ref|XP_001758703.1| predicted protein [Physcomitrella patens subsp. patens]
gi|76880176|dbj|BAE45860.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
gi|162690313|gb|EDQ76681.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 966
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/742 (51%), Positives = 516/742 (69%), Gaps = 24/742 (3%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
M+ GF T+P FL++ +V+ + L WF N ++ NSG+VVVKP R+GSS+GV+VA G+
Sbjct: 246 MAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARSGSSVGVSVAEGLD 305
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ-FQG 119
+++ A+ + +G +DRVV+E+F EG EFTA+VLDVG G + PV L PTEVEL
Sbjct: 306 TAVQHAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETRPVALFPTEVELSGLDY 365
Query: 120 SVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
D + AIFNYRRKYLPT+QV+YHTPPRF IN IR A+ LF+ L L D AR+DG
Sbjct: 366 ESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAADLFRILNLRDIARVDG 425
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239
W LP V SET I+F+DINL+SGMEQTS LF QAS VG +H +ILRT+
Sbjct: 426 WLLP---QVGGQSET---------IIFSDINLMSGMEQTSILFMQASLVGLAHVDILRTL 473
Query: 240 IGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMS 299
+ AC+R+P + S+ S + +S +K +K++ VFV+FGGD+SERQVSL+S
Sbjct: 474 LRRACTRYPTIPLPMSIGSSMSLSNSFAKVDPCTSKQK----VFVLFGGDSSERQVSLIS 529
Query: 300 GTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359
GTNVWLNL+A+ND++V+P LLA + +G+ + + VW+LPY+ VLRHT EE
Sbjct: 530 GTNVWLNLRAWNDLDVSPFLLAPAE--PNGIKPKMGTDRVEDKTVWALPYAAVLRHTVEE 587
Query: 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA 419
V+ C+E ++ A + LR+++++DL +G K S + + ELP ++ ++I+ A
Sbjct: 588 VVEGCVENLKSQAIAKVTSLRDRILSDL-QGSAKASLLSN-EGHMELPSMITLEKFIEEA 645
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
K+N A VFIAVHG IGE+GTLQ LL A GV +TG AS+ CMDK AT A++HL+ G
Sbjct: 646 KQNDAVVFIAVHGSIGENGTLQELLAASGVRHTGSAAEASRLCMDKAATGAAISHLSSQG 705
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
+ T K +R+ ++L+ +W EL +L+ LCVKP DGCSTGVA+L CAEDL Y
Sbjct: 706 IYTAAKALRKVHEILQKED-QVWMELKEELKANDLCVKPVGDGCSTGVAKLSCAEDLAAY 764
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD--RL 597
KA++ +IPP +F +AHG+IEMP PPE L+FEPF+ETD I S +T +++ L
Sbjct: 765 AKAVQTGQSQIPPGTFLKAHGIIEMPGVPPERLLFEPFIETDHIAVLSSTTGEDSKDGEL 824
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+W+G SRW+E+TVGV+G G MH+L PS+TVKE+G IL+LEEKFQGGTGINLTPPP S+
Sbjct: 825 IWEGKSRWIEVTVGVLGVQGVMHALNPSITVKETGSILTLEEKFQGGTGINLTPPPPSLA 884
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
+ EA+ CK+RIE++A L L+GF+RIDAF++ D GEV+IIE NTVPGMTPSTVLIHQAL
Sbjct: 885 TEEAIAGCKKRIEIVARTLGLDGFARIDAFMHADTGEVIIIEANTVPGMTPSTVLIHQAL 944
Query: 718 SEQPPMYPHQFFRKVLDLGSER 739
+E P MYP FFRKV+DL ++
Sbjct: 945 AETPAMYPKTFFRKVVDLALQK 966
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 128/343 (37%), Gaps = 83/343 (24%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
F IA S E+++ + VF A+HG GEDG +Q+LLE+ G+PY G G A+
Sbjct: 174 FKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAAA 233
Query: 460 KTCMDK--VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI-----WHELTS-KLQC 511
+ DK A +A + A L + L++ VDI W E +
Sbjct: 234 QVAFDKYDAAAEMAWHGFATLPIF-----------LVENGKVDINRLRGWFEDNNINANS 282
Query: 512 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLL-----RIPPNSFSRAHGMIEMP- 565
+ VKPAR G S GV+ AE L V+ E R+ F A G +E
Sbjct: 283 GRVVVKPARSGSSVGVS---VAEGLDTAVQHAEALFNKGGNDRVVIEMF--AEGALEFTA 337
Query: 566 --------NPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 617
N + +F VE + + S N+ A
Sbjct: 338 LVLDVGFGNETRPVALFPTEVELSGLDYESDGENETA----------------------- 374
Query: 618 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 677
I + K+ ++ PP S E ++K + R + L
Sbjct: 375 ----------------IFNYRRKYLPTRQVSYHTPPR--FSEETINKIRNRAADLFRILN 416
Query: 678 LEGFSRIDAF----VNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
L +R+D + V + ++ ++N + GM +++L QA
Sbjct: 417 LRDIARVDGWLLPQVGGQSETIIFSDINLMSGMEQTSILFMQA 459
>gi|414591255|tpg|DAA41826.1| TPA: hypothetical protein ZEAMMB73_402779, partial [Zea mays]
Length = 680
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/455 (62%), Positives = 354/455 (77%), Gaps = 6/455 (1%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ QGF+TVP+FL++ ++ + EL WF T L+ +GK +VKPTRAGSSIGV VAYGV
Sbjct: 212 LNAQGFLTVPNFLVEKDKLAKPELEAWFQTVNLNKENGKTIVKPTRAGSSIGVVVAYGVN 271
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D+ +KA+ II EGIDD+V++E+F+EGG+EFTAIV+DVG + PVVLLPTEVELQ+ +
Sbjct: 272 DAAQKAEEIISEGIDDKVIIEVFIEGGTEFTAIVVDVGIANNSEPVVLLPTEVELQYSNN 331
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E D IFNYR+KYLP++QVAYH+PPRFP VI+ IR+G SLLF RLGL D+ARIDGW
Sbjct: 332 SDTKE-DTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFCRLGLHDYARIDGW 390
Query: 181 FLPSSTHVFSSSET--KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
FLPS +E K+G+T++G++LFTDINLISGMEQTSFLFQQAS VGFSHS ILRT
Sbjct: 391 FLPSPVASLPPAENSDKFGNTKYGSVLFTDINLISGMEQTSFLFQQASAVGFSHSRILRT 450
Query: 239 IIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLM 298
++ HACSRFP+L N+ + L + SK EA++K ++VFVIFGGDTSERQVSLM
Sbjct: 451 VVQHACSRFPSLLPCNNAWTALSRKLQPSKQVEAIHKGTSRQKVFVIFGGDTSERQVSLM 510
Query: 299 SGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTE 358
SGTNVWLNLQ F+D++VTPCLLA + S D + +D SSR VW+LPYSLVLRHTTE
Sbjct: 511 SGTNVWLNLQGFDDLDVTPCLLAPAHGYFSSHDQDFSD---SSREVWTLPYSLVLRHTTE 567
Query: 359 EVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL 418
EV AAC+EA EP+R T LR+QV+N+L L KH WF GFDIA E P+++S+ +WI
Sbjct: 568 EVHAACVEATEPERVEITKRLRDQVMNELGSALSKHDWFAGFDIAYEQPIKYSLQQWIDH 627
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTG 453
KE +A VFIAVHGGIGEDGT+Q+LLE+ GVPYTG
Sbjct: 628 VKETEAVVFIAVHGGIGEDGTIQTLLESAGVPYTG 662
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 149/397 (37%), Gaps = 91/397 (22%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAFT---SHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H E L C I+ AF + L + +D K S FD
Sbjct: 100 VLDHIQGEDLVVCCYYIDCAMKAFAISPAQLYSNTPSDF--DFKLESLAQEFD------- 150
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
S++++ + N VF +HG GEDG +Q LLE VP+ G + DK
Sbjct: 151 --SLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKECQRAFDKHNA 208
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT--SKLQCKTLCVKPARDGCSTG 526
SL LN G LT+ + K+ L K P ++ W + +K KT+ VKP R G S G
Sbjct: 209 SLELNA---QGFLTVPNFLVEKDKLAK-PELEAWFQTVNLNKENGKTI-VKPTRAGSSIG 263
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
V A + + EE + + G+ + +I E F+E
Sbjct: 264 VV---VAYGVNDAAQKAEEII----------SEGIDDK-------VIIEVFIE------- 296
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGV-IGKCGSMHSLMPS-VTVKESGD-------ILSL 637
G + + I V V I L+P+ V ++ S + I +
Sbjct: 297 --------------GGTEFTAIVVDVGIANNSEPVVLLPTEVELQYSNNSDTKEDTIFNY 342
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA----------- 686
+K+ + PP E +D +Q I L+ L L ++RID
Sbjct: 343 RKKYLPSRQVAYHSPPR--FPAEVIDCIRQGISLLFCRLGLHDYARIDGWFLPSPVASLP 400
Query: 687 -------FVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
F N G VL ++N + GM ++ L QA
Sbjct: 401 PAENSDKFGNTKYGSVLFTDINLISGMEQTSFLFQQA 437
>gi|303273608|ref|XP_003056164.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462248|gb|EEH59540.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 918
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 311/789 (39%), Positives = 426/789 (53%), Gaps = 89/789 (11%)
Query: 1 MSKQGFITVPSFLLQGSEVNE--SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG 58
++ +GF T+ LL+ S + + L WF T LDP VVVKP R GSSIGV++A G
Sbjct: 166 LAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDYVVVKPARGGSSIGVSIARG 225
Query: 59 VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL--- 115
V+ + A + G D RVVVE + G EFT VL G PV L+PTE+E+
Sbjct: 226 VVQASDLASKLFTSGTDSRVVVERYAGSGVEFTITVL----GTTNEPVPLIPTEIEILAD 281
Query: 116 --------QFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQ 167
+ G E+ F++RRKYLPT V YHTP RF I+ IR A+ +F+
Sbjct: 282 VEKGLKTSRKVGPAARLEQFNFFDFRRKYLPTMHVVYHTPARFGTGAIDKIRRNAASIFK 341
Query: 168 RLGLCDFARIDGWFLPSSTHV--FSSSETKYGSTEW----GTILFTDINLISGMEQTSFL 221
LGL D+AR+DG+F+P+ + E G +E G +FTD+N++ GMEQ+SFL
Sbjct: 342 LLGLRDYARLDGFFMPNGDVAVQWCKEELVLGDSESLTTDGVPVFTDVNVVCGMEQSSFL 401
Query: 222 FQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALN------- 274
FQQA+++G +HS +LR ++ AC R S++P R S+ N
Sbjct: 402 FQQAAEIGMTHSAVLRHVLCSACHR-----------SNIPIRMQISEKERKSNAETLTFY 450
Query: 275 -----KREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASS-IDCSS 328
K E +V+V+FGG TSERQVSLMSGTNVWL L+ + + +V P LL + I C
Sbjct: 451 QQPQLKTENRVKVYVLFGGGTSERQVSLMSGTNVWLRLREYPEYDVEPLLLEPTPIGCQ- 509
Query: 329 GMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLV 388
+D VW LPY+ VLRHT EEVLA P A ++
Sbjct: 510 -LDKTY---------VWHLPYAAVLRHTVEEVLAVAKRTQNPTPGA--------CARAII 551
Query: 389 EGLKKHSWFTGFDIADE-----LPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSL 443
L+ + W D+ D +R +I+E+ A +A +F AVHGG GEDGTLQ+L
Sbjct: 552 LLLRTYGWLD--DVEDSGTGITTAVRETISEFAATAAAEKAIIFNAVHGGCGEDGTLQAL 609
Query: 444 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK---DVRRKEDLL-KTPIV 499
YTG G +S+ C DK AT L L+ G+L+ N+ R E L +T IV
Sbjct: 610 FTEARASYTGSGPASSRLCFDKAATGGELKPLSYFGILSYNRLLVSSRVLEVFLGQTSIV 669
Query: 500 -DIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFS 556
IW + + LC+KP DGCSTGVARL ++DL Y A+ + P
Sbjct: 670 ATIWDAFVATVGPAPFGLCIKPNSDGCSTGVARLKGSDDLLAYATAIFNHQSHLHPGDLP 729
Query: 557 RAHGM---IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK----GNSRWVEIT 609
A G+ IE+P P + EPF+ T + + + L ++ +RW+E+T
Sbjct: 730 MASGIAHIIELPEEIPSNFLVEPFIPTATVCITR--CRSGIEELYFEDVAFSTTRWIEVT 787
Query: 610 VGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRI 669
VGV+G G +L PS+T+ GD+LSLEEKFQ GTG+N+TP PA+I S E L + RI
Sbjct: 788 VGVVGTKGHTAALHPSLTIVGHGDVLSLEEKFQAGTGVNITPLPATIASAEVLSAARTRI 847
Query: 670 ELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFF 729
ANAL +EGF+RID F++VD G+V+I+E NTVPG+TPSTVL HQAL+ P P F
Sbjct: 848 AFAANALDIEGFARIDLFLHVDTGDVMIVEANTVPGLTPSTVLFHQALATNPRANPAAFL 907
Query: 730 RKVLDLGSE 738
+ + L +
Sbjct: 908 KHAIKLAHK 916
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 400 FDIADELPMRHSINEWIKLA---KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGV 456
FD R I + + LA + A F A+HG GEDG LQ+ LE GVP+ G
Sbjct: 91 FDFKLRGKRREGIRDPVALASRLRAQGAIAFPALHGAFGEDGVLQNALEEAGVPFVGTDA 150
Query: 457 MASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKL--QCKTL 514
M + DK S LA G T++ + + + T L + +
Sbjct: 151 MHACRAFDKFTCS---RTLAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDYV 207
Query: 515 CVKPARDGCSTGVA 528
VKPAR G S GV+
Sbjct: 208 VVKPARGGSSIGVS 221
>gi|406969232|gb|EKD93924.1| hypothetical protein ACD_28C00026G0002 [uncultured bacterium]
Length = 793
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 293/743 (39%), Positives = 408/743 (54%), Gaps = 101/743 (13%)
Query: 1 MSKQGFITVPSFLLQGSEVNESE-LSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGV 59
+ +QGF +PS +L+ + + + ++F NK+ + +VKP GSSI V
Sbjct: 137 IREQGFFALPSQVLKIFHNDHGKRIRDFFKINKIK----RAIVKPATGGSSISVFSVGSP 192
Query: 60 IDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQG 119
++L+KA+ I ID RVV+E F EG EFT I+L G PV +LPTE+E+ +Q
Sbjct: 193 EEALEKAQLIFSRRIDTRVVIEPFCEG-VEFTVILLQNRFGM---PVAVLPTEMEMDYQN 248
Query: 120 SVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
IF++R+KYLPT+QV YH PPRF I I+ LF LG+ DFAR DG
Sbjct: 249 H-------QIFDFRKKYLPTRQVTYHCPPRFDNETIERIQVQVEQLFTVLGMRDFARFDG 301
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239
W LP G + F+D N ISGMEQ SFLFQQ++++G SH ++LR I
Sbjct: 302 WLLPD-----------------GKLWFSDFNPISGMEQNSFLFQQSARIGLSHRDVLRLI 344
Query: 240 IGHACSR----FPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQV 295
+ +AC R FP+ S + V V+FGG+TSERQV
Sbjct: 345 VKNACRRQGIPFPDFISKQKQKKK-------------------RKPVNVLFGGNTSERQV 385
Query: 296 SLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRH 355
SLMSGTNVWL L+ + P LL D N VWS+PY+L L H
Sbjct: 386 SLMSGTNVWLKLRQSETYDPKPFLL----------DLNGE--------VWSVPYALTLNH 427
Query: 356 TTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADE--LPMRHSIN 413
T EE+ C+ A E + + LR L E +K + +++ LP R ++
Sbjct: 428 TVEEIYENCLRAKEDE-----NRLRF-----LEEKVKLRLALESEESSEDFVLPERMTLE 477
Query: 414 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN 473
+++ ++ VF +HGGIGEDGTLQ ++ V + GPG AS CMDK AT+ AL
Sbjct: 478 QFLNRSE----FVFTGLHGGIGEDGTLQRMMVDANVKFNGPGEKASALCMDKYATNQALK 533
Query: 474 HLADLGVLTINKDVRRKEDLLK---TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
L GV N+ +L+ +W EL +LQ +++ VKP DGCS+GV RL
Sbjct: 534 GLEAQGVYVPNQRCIELSELVSLKGKAFEKVWKELQGELQARSVIVKPQSDGCSSGVVRL 593
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
DL YV ++ IP F MIEMP E L+FEPF+ETD +
Sbjct: 594 YSIADLKQYVNWADKVAPFIPAGVFKNQVSMIEMPLTRMENLLFEPFIETDVV------- 646
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
++L W+ W+E+TVGV+ + G M +L PS+TV E G++LSLEEKFQGGTGIN+T
Sbjct: 647 RVKGNQLKWRKKKGWIEVTVGVVERKGKMVALSPSLTVAE-GEVLSLEEKFQGGTGINIT 705
Query: 651 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
PP +I+ ++AL++ K IE++A L L G+SRID F++V+ G++LIIEVNT PG+TPST
Sbjct: 706 PPSEAIVKSKALERAKHGIEVVAKHLGLNGYSRIDTFMHVETGDLLIIEVNTTPGLTPST 765
Query: 711 VLIHQALSEQPPMYPHQFFRKVL 733
V HQ L+E P+YP + +++
Sbjct: 766 VFFHQGLAEPTPIYPRELLEELV 788
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 124/328 (37%), Gaps = 69/328 (21%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
+ FD + R +K+ ++ F +HG GEDG +Q LLE+ VPY G GV
Sbjct: 63 SDFDFKLQSTARFLSQTALKMLLKSVDLAFPVMHGQFGEDGGIQRLLESYKVPYVGSGVE 122
Query: 458 ASKTCMDKVATSLALNHLADLG----VLTI--NKDVRRKEDLLKTPIVDIWHELTSKLQC 511
A K C DK + + VL I N +R D K +
Sbjct: 123 ACKRCSDKFDANTFIREQGFFALPSQVLKIFHNDHGKRIRDFFKIN------------KI 170
Query: 512 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 571
K VKPA G S V + E+ ALE+ L +R
Sbjct: 171 KRAIVKPATGGSSISVFSVGSPEE------ALEKAQLIFSRRIDTR-------------- 210
Query: 572 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTV-- 628
++ EPF E VE TV ++ + G +++P+
Sbjct: 211 VVIEPFCEG-------------------------VEFTVILLQNRFGMPVAVLPTEMEMD 245
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
++ I +K+ + PP E +++ + ++E + L + F+R D ++
Sbjct: 246 YQNHQIFDFRKKYLPTRQVTYHCPPR--FDNETIERIQVQVEQLFTVLGMRDFARFDGWL 303
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ +G++ + N + GM ++ L Q+
Sbjct: 304 -LPDGKLWFSDFNPISGMEQNSFLFQQS 330
>gi|46446032|ref|YP_007397.1| D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399673|emb|CAF23122.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
amoebophila UWE25]
Length = 798
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 255/690 (36%), Positives = 361/690 (52%), Gaps = 86/690 (12%)
Query: 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
+ +VKPT GSSIGVT D+ +K K + +GI R ++E F EG +EFT +VL
Sbjct: 169 RAIVKPTMGGSSIGVTSVQTPEDAFEKIKMLCQQGIAKRALIEPFCEG-TEFTVVVLQNQ 227
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
PV L+PTE+E+ +Q IF+YR+KYLPT Q YHTP RF +I I
Sbjct: 228 QS---KPVALIPTEIEMSYQNH-------QIFDYRKKYLPTNQTTYHTPARFDETIIQGI 277
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R+ A +F + DFAR+DGW L GTI FTD+N ISGMEQ
Sbjct: 278 RQKAEAIFTLFHMRDFARLDGWLLND-----------------GTIYFTDLNPISGMEQN 320
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREG 278
SFLF+QAS +G +H ++ R II AC R+ LA V + +
Sbjct: 321 SFLFRQASLLGLTHRDVFRLIITSACLRW-KLAPPTFVDESMLEK--------------- 364
Query: 279 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPD 338
++V V+FGG +ERQVSLMSGTNVWL L + P +
Sbjct: 365 -KKVHVLFGGKNAERQVSLMSGTNVWLKLLRSSKYHPIPFFYGKN--------------- 408
Query: 339 SSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFT 398
++W LPY+ L HT EE+L C+ R A L N N + E L F
Sbjct: 409 ---DLIWQLPYAYTLDHTVEEILHRCLA-----REASNKKLPN-YFNSICEQLGIPYNF- 458
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
E P + ++ +L+ NQA VFIA+HGG GE+G LQ LE + Y G
Sbjct: 459 -----QETPSSMCLQDFYQLSASNQAFVFIAMHGGEGENGILQKELEKNQLYYNGSCAKT 513
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQCKTLC 515
S CMDK T + L + ++ K+ +L ++ W+++ L+ L
Sbjct: 514 SSICMDKFLTGQVIEQLKHPNIFSLPKECVEAANLFGQSTKYFLEKWNKICISLRSNRLI 573
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
+KP +DGCS G+ L DL Y ++ + IP SFS+ +IEMP+ + E
Sbjct: 574 IKPRQDGCSAGIVLLESGADLEKYFAFIQNNVSLIPKGSFSQQKDVIEMPSSTCVEYLLE 633
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL 635
P++ETD I+ + L+ + WVE+TVGV+ SL PS+T+ E G +L
Sbjct: 634 PYIETDRIIL-------DQGELIHEIKEGWVELTVGVLEHNQIYRSLNPSITLAE-GAVL 685
Query: 636 SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEV 695
SLEEKFQGGTG+NLTPPP I+++E + + K IE A+ALQ++ ++R+D F + + ++
Sbjct: 686 SLEEKFQGGTGVNLTPPPEKILASEDVSQIKFLIEKTADALQIQNYARLDIFYHRETKKM 745
Query: 696 LIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
++IE NT+PG+TPSTV Q L+E+ P+ P
Sbjct: 746 VVIEANTLPGLTPSTVFYQQGLAEKKPLNP 775
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 110/308 (35%), Gaps = 62/308 (20%)
Query: 414 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT--CMDKVATSLA 471
E K N VF +HG GEDG LQ +LE VP+ G G A C + L
Sbjct: 77 EEFKKILRNIDLVFPVIHGIFGEDGELQKILEEIDVPFVGTGSQACAEMFCKYHASQILH 136
Query: 472 LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 531
N L + + DL PI + + Q K VKP G S GV +
Sbjct: 137 QNRFPAFMKLEVCPETN---DL--APIKSFFEQ----HQLKRAIVKPTMGGSSIGVTSVQ 187
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
ED +K L C I + + EPF E
Sbjct: 188 TPEDAFEKIKML--CQQGIAKRA------------------LIEPFCEG----------- 216
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMH-SLMPS--VTVKESGDILSLEEKFQGGTGIN 648
E TV V+ S +L+P+ ++ I +K+ T
Sbjct: 217 --------------TEFTVVVLQNQQSKPVALIPTEIEMSYQNHQIFDYRKKYL-PTNQT 261
Query: 649 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
PA T + +Q+ E I + F+R+D ++ +++G + ++N + GM
Sbjct: 262 TYHTPARFDET-IIQGIRQKAEAIFTLFHMRDFARLDGWL-LNDGTIYFTDLNPISGMEQ 319
Query: 709 STVLIHQA 716
++ L QA
Sbjct: 320 NSFLFRQA 327
>gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana]
gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana]
gi|332641164|gb|AEE74685.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
Length = 519
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/313 (65%), Positives = 247/313 (78%), Gaps = 7/313 (2%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GF+TVP++L+QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV
Sbjct: 213 LKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVN 272
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G
Sbjct: 273 DSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGI 332
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW
Sbjct: 333 GDPKE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGW 391
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+L ++++ S G T+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+
Sbjct: 392 YLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIV 451
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
ACSRFP+L YN S L S+ L E ++VFVIFGGDTSERQVS+MSG
Sbjct: 452 HRACSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSG 505
Query: 301 TNVWLNLQAFNDI 313
TNVW+NLQ + D+
Sbjct: 506 TNVWVNLQRYVDV 518
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H + + I+PD AF ++ + + +D K S GF EL
Sbjct: 101 VLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFSSLSELA- 157
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
E + A + VF +HG GEDG +Q LLE+ +P+ G G DK
Sbjct: 158 -----EHLVSAVD---IVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEA 209
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
SL L +LG +T+ + + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 210 SL---ELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265
>gi|21536607|gb|AAM60939.1| unknown [Arabidopsis thaliana]
Length = 516
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/313 (65%), Positives = 247/313 (78%), Gaps = 7/313 (2%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GF+TVP++L+QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV
Sbjct: 210 LKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVN 269
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G
Sbjct: 270 DSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGI 329
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW
Sbjct: 330 GDPKE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGW 388
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+L ++++ S G T+ G I+FTDINLISGMEQTSFLFQQASKVGFSHSNILRTI+
Sbjct: 389 YLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIV 448
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300
ACSRFP+L YN S L S+ L E ++VFVIFGGDTSERQVS+MSG
Sbjct: 449 HRACSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFVIFGGDTSERQVSVMSG 502
Query: 301 TNVWLNLQAFNDI 313
TNVW+NLQ + D+
Sbjct: 503 TNVWVNLQRYVDV 515
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE+ +P+ G G DK SL L +LG +T+
Sbjct: 164 VFXVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASL---ELKELGFMTVPN 220
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
+ + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 221 YLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 262
>gi|6403499|gb|AAF07839.1|AC010871_15 hypothetical protein [Arabidopsis thaliana]
Length = 269
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/260 (70%), Positives = 213/260 (81%), Gaps = 4/260 (1%)
Query: 384 VNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSL 443
+ DL++G K SWF GFDI DELP ++S+ EWIK AKE QATVFIAVHGGIGEDGTLQ L
Sbjct: 1 MEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIKHAKEAQATVFIAVHGGIGEDGTLQGL 60
Query: 444 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH 503
LE EGV YTGPGV+AS+TCMDKV TS AL++L++ G+ TI+KDV+R ED++ ++W
Sbjct: 61 LEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSEFGIHTISKDVKRTEDIMHETFPNVWD 120
Query: 504 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 563
EL KLQC TLCVKPA+DGCSTGVARLC +EDL VYV+AL++C+ RIPPN+ S+ HGMIE
Sbjct: 121 ELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLAVYVQALKDCIPRIPPNTLSKTHGMIE 180
Query: 564 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 623
MPNP PE LIFEPFVETDEI+ SS K +L WKG RWVE+TVGVIGK GSMHSL
Sbjct: 181 MPNPTPEFLIFEPFVETDEIIVSS----KAKQQLSWKGRRRWVEMTVGVIGKRGSMHSLS 236
Query: 624 PSVTVKESGDILSLEEKFQG 643
PS+TVKESGDILSLEEKFQG
Sbjct: 237 PSLTVKESGDILSLEEKFQG 256
>gi|147832389|emb|CAN77783.1| hypothetical protein VITISV_037213 [Vitis vinifera]
Length = 235
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/225 (77%), Positives = 193/225 (85%)
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
D + +W+LPYSLVLRHTTEEVLAACIEAIEPDRAA TS LRNQV+NDL+EGLKK WF
Sbjct: 7 DVRMKTIWTLPYSLVLRHTTEEVLAACIEAIEPDRAALTSELRNQVMNDLMEGLKKQXWF 66
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
TGFD+ADE P+R+S+ +W+KLAKE QATVFIAVHGG+GEDGTLQ LLEA GVPYTGPGV
Sbjct: 67 TGFDLADEPPVRYSVEQWVKLAKEVQATVFIAVHGGMGEDGTLQFLLEAGGVPYTGPGVE 126
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517
SK CMDKVATSLALNHL GVLTINK V RKEDLL P+ DIWH+LTSKLQ +TLCVK
Sbjct: 127 TSKICMDKVATSLALNHLEKFGVLTINKKVLRKEDLLNAPVHDIWHDLTSKLQSETLCVK 186
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 562
PARDGCSTGVARLCC EDL VYVKALEEC LRIP NS S+ + +I
Sbjct: 187 PARDGCSTGVARLCCLEDLAVYVKALEECFLRIPSNSLSKVYKLI 231
>gi|6403498|gb|AAF07838.1|AC010871_14 unknown protein [Arabidopsis thaliana]
Length = 515
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 196/329 (59%), Positives = 235/329 (71%), Gaps = 43/329 (13%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+ + GF+TVP++L+QG+ V++SE++ WF N+LD GKVVVKP +AGSSIGV VA+GV
Sbjct: 213 LKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFGVN 272
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
DS+KKA +ILEGIDDRVVVE+F+E EFTAIVLDVGSG CHPVVL+PTEV+LQF G
Sbjct: 273 DSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFHGI 332
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
D +E +AIF+YRRKYLPTQQV YHTPPRFPI VI SIRE ASL+FQ+LGL DFARIDGW
Sbjct: 333 GDPKE-NAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARIDGW 391
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASK------------- 227
+L ++++ S ISGMEQTSFLFQQASK
Sbjct: 392 YLAPNSNLSSP--------------------ISGMEQTSFLFQQASKVIKDIVTLMIIDS 431
Query: 228 ---VGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFV 284
VGFSHSNILRTI+ ACSRFP+L YN S L S+ L E ++VFV
Sbjct: 432 YIQVGFSHSNILRTIVHRACSRFPHLDWYNYGYSQLLQGST------TLEVSEDPQKVFV 485
Query: 285 IFGGDTSERQVSLMSGTNVWLNLQAFNDI 313
IFGGDTSERQVS+MSGTNVW+NLQ + D+
Sbjct: 486 IFGGDTSERQVSVMSGTNVWVNLQRYVDV 514
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 352 VLRHTTEEVLAACIEAIEPDRAAF---TSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
VL H + + I+PD AF ++ + + +D K S GF EL
Sbjct: 101 VLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF--DFKLESLAQGFSSLSELA- 157
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
E + A + VF +HG GEDG +Q LLE+ +P+ G G DK
Sbjct: 158 -----EHLVSAVD---IVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEA 209
Query: 469 SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
SL L +LG +T+ + + + K+ I + + L+ + VKPA+ G S GV
Sbjct: 210 SL---ELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265
>gi|147828391|emb|CAN70986.1| hypothetical protein VITISV_039270 [Vitis vinifera]
Length = 222
Score = 365 bits (936), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/210 (81%), Positives = 192/210 (91%)
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
C EDL VYVKALEEC LRIP NS S+AHG+IEMP+PPPE+LIFEPF+ETDEI+ SS + N
Sbjct: 13 CLEDLAVYVKALEECFLRIPSNSLSKAHGVIEMPSPPPELLIFEPFIETDEIIVSSNAVN 72
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
A+RL+W+G+SRWVE+TVGV+GK GSMHSL PSVTVKESGDILSLEEKFQGGTGINLTP
Sbjct: 73 DXANRLIWEGHSRWVEVTVGVVGKRGSMHSLTPSVTVKESGDILSLEEKFQGGTGINLTP 132
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
PP SI+S AL+ CKQRIELIAN LQLEGFSRIDAFVNVD+GEVLIIEVNTVPGMTPSTV
Sbjct: 133 PPLSIISKAALESCKQRIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTV 192
Query: 712 LIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
LIHQAL+E+PPMYPH+FFR +LDLGSERF+
Sbjct: 193 LIHQALAEEPPMYPHRFFRTLLDLGSERFI 222
>gi|242047032|ref|XP_002461262.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
gi|241924639|gb|EER97783.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
Length = 603
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/244 (61%), Positives = 185/244 (75%), Gaps = 1/244 (0%)
Query: 406 LPMRHSINEWIKLAKEN-QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
L +RH+ E E + V VHGGIGEDGT+Q+LLE+ GVP+TGPG + S+TC+D
Sbjct: 360 LVLRHTTEEVHAACVEVFMSCVLYVVHGGIGEDGTIQTLLESAGVPFTGPGPIVSRTCID 419
Query: 465 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
KVA+SLA++HL GV TI KDVR E++LK+ +VDIW+EL +KL+ +T+CVKPARDGCS
Sbjct: 420 KVASSLAVDHLVSYGVRTIPKDVRATEEVLKSSLVDIWNELKAKLRTETVCVKPARDGCS 479
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
TGV RLCC +DL VY AL +P N SRAHG+IEM PPPE LIFEPF+ETDEI+
Sbjct: 480 TGVERLCCPKDLEVYTNALRRKFQYLPANCLSRAHGVIEMRVPPPESLIFEPFIETDEII 539
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 644
S++ N A L+WKG + W+EIT GV+GK G MHSL PS+TVKESGDILSLEEKFQGG
Sbjct: 540 ISNKLGNDRARHLVWKGENDWLEITDGVVGKRGEMHSLNPSITVKESGDILSLEEKFQGG 599
Query: 645 TGIN 648
TGIN
Sbjct: 600 TGIN 603
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 120/227 (52%), Gaps = 34/227 (14%)
Query: 6 FITVPSFLLQGS-----EVNESELSNWFVTNKLDPNSGKVV--------------VKPTR 46
F+ PS Q + ++ + EL WF T L+ +GKV+ VKPTR
Sbjct: 124 FVGTPSKECQRAFDKKDKLAKPELEAWFKTVNLNKENGKVIGWIGEGVTSDVLEQVKPTR 183
Query: 47 AGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPV 106
AGSSIG+ VAYGV D+ +KA+ II EGIDD+V++E+FLEG FT IV+DVG+ + PV
Sbjct: 184 AGSSIGMVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEGALSFTTIVVDVGTANNSEPV 243
Query: 107 VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF-------PIVVINSIR 159
VLLP EVELQ+ S D KD IFNYR+KYLP++Q++ F + + R
Sbjct: 244 VLLPKEVELQYSNSSDTN-KDTIFNYRKKYLPSRQISGMEQTSFLFQQASTKTTTVETNR 302
Query: 160 EGASLLFQRLGLCDFAR-------IDGWFLPSSTHVFSSSETKYGST 199
+ G CD R + L + FSS + + T
Sbjct: 303 SNPQRYIKTEGFCDLQRGHFRALDVTPCLLAPANGYFSSHDEDFSDT 349
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 253 YNSVSSHLPGRS-SGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQA-- 309
+N +LP R SG + T L ++ + V +R + T + +LQ
Sbjct: 266 FNYRKKYLPSRQISGMEQTSFLFQQASTKTTTVETNRSNPQRYIK----TEGFCDLQRGH 321
Query: 310 FNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIE 366
F ++VTPCLLA + S D + +D +SR VW+LPYSLVLRHTTEEV AAC+E
Sbjct: 322 FRALDVTPCLLAPANGYFSSHDEDFSD---TSREVWTLPYSLVLRHTTEEVHAACVE 375
>gi|395214454|ref|ZP_10400603.1| D-alanine--D-alanine ligase A [Pontibacter sp. BAB1700]
gi|394456299|gb|EJF10617.1| D-alanine--D-alanine ligase A [Pontibacter sp. BAB1700]
Length = 908
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 196/688 (28%), Positives = 306/688 (44%), Gaps = 122/688 (17%)
Query: 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 134
+ +V+VE F+ G EF+ IV+ +G P+ L PTE+ +GS +F+YR
Sbjct: 305 EQQVLVEAFI-NGREFSCIVVQDETG---APIALPPTEI---VKGS-------EVFDYRS 350
Query: 135 KYLP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSS 192
KYLP +++ TP P I IR+ S LF LG +AR+DG+
Sbjct: 351 KYLPGLARKI---TPINLPSEQIQEIRKACSKLFVNLGFNVYARLDGFI----------- 396
Query: 193 ETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPNLAS 252
TE G I D N SGM +SF F QA+++G + S L II + +
Sbjct: 397 ------TEEGNIFLNDPNTTSGMLPSSFFFHQAAEIGLNPSQFLTYIIRTSVAERLKSGK 450
Query: 253 YNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFND 312
+ L + + E ++ + IR V VI GG +SER +S+ SG N++ L +
Sbjct: 451 DTVTLTRLLSQLDNAIREENAHRHDKIR-VGVIMGGYSSERHISVESGRNIYEKLSSSTK 509
Query: 313 IEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDR 372
E P L S + ++S+P +++L+ +++ E I+
Sbjct: 510 YEPLPIFLTGS---------------NEEHRLYSIPINIMLKDNADDIK----EKIQHFE 550
Query: 373 AAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHG 432
H Q + E + + +TG + DE P R + ++ + VFIA+HG
Sbjct: 551 HGGKPHPVLQEIISEAESITRK--YTGKSL-DE-PQRITYSQLQNMVD----AVFIALHG 602
Query: 433 GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 492
GEDG LQ LE +PY G G+ +S+ ++K T+ LA GV + + KED
Sbjct: 603 RPGEDGALQQELEKLAIPYNGSGISSSQITINKYDTN---EILAKHGVPVAHHRMAWKED 659
Query: 493 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPP 552
LK + L ++ + KPA DGCS+ V ++ +L +
Sbjct: 660 WLKDKEA-FYQSLENEFRY-PFIAKPADDGCSSAVKKIKNRAELDAFT------------ 705
Query: 553 NSFSRAHGMIEMPNPPPEILIFEPFVETD-------EILFSSQSTNKNA---DRLMWK-G 601
LIF E D + F + NK + L+ K G
Sbjct: 706 ------------------TLIFREMEELDTECARTLSLGFKEEFPNKQGFLVETLISKNG 747
Query: 602 NSRWVEITVGVIGKCGS----MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI- 656
++EIT G++ + + + G++LSLEEKF G G N+TP +
Sbjct: 748 AKHFLEITGGLLTTYAPDGTVAYEVFEASEALAEGEVLSLEEKFLAGEGQNITPARYAQD 807
Query: 657 --MSTEALDKCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLIIEVNTVPGMTPSTV 711
+ DK K+ ++ +A L +EG++RIDAFV V D E +IIEVN++PGMTP+T
Sbjct: 808 PERRQKISDKVKEDLKRVAQILNIEGYARIDAFVRVLENDEVETIIIEVNSLPGMTPATC 867
Query: 712 LIHQALSEQPPMYPHQFFRKVLDLGSER 739
+ HQ P++F ++L G ER
Sbjct: 868 IFHQTAING--YKPYEFIDRILTFGVER 893
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 56/257 (21%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQA--FNDIEVTPCLLASSI--DCSSGMDANITDP 337
V +IFGG + ER++S G V+ NL F + V L + I D I D
Sbjct: 3 VGIIFGGPSREREISFAGGRTVYDNLDKALFEAVPVFADSLGNFILLDWQYIYKGTIRD- 61
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
V +LP S E L +E++ + +++++ + L H +
Sbjct: 62 --FYPPVEALPES-------EHGLQIYLESL----GELSIEEQDRIIAKAGKRLLPHEFK 108
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
FD A F+A+HG GEDG++Q LLE +PY+G G++
Sbjct: 109 NHFDFA-----------------------FLALHGPYGEDGSIQGLLEWYHIPYSGSGIL 145
Query: 458 ASKTCMDKVATSLALNHLA----DLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQC 511
S +DK A L D + KDV ++ L ++ + D+
Sbjct: 146 PSSIGIDKAAQKEMLKQHGFPTPDYRKVQYAEWKDVNNRKQLFESLVADL---------G 196
Query: 512 KTLCVKPARDGCSTGVA 528
L +K G S GV+
Sbjct: 197 LPLVLKAPHQGSSIGVS 213
>gi|110637336|ref|YP_677543.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
gi|110280017|gb|ABG58203.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
Length = 897
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 188/702 (26%), Positives = 312/702 (44%), Gaps = 125/702 (17%)
Query: 62 SLKKAKGIILEGIDDRVVVEL--FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQG 119
SL + ++LE +D+ + + F++G EF+ IV+ D +P+ L PT +
Sbjct: 289 SLSSKERVLLESLDNEEEIIIESFIKG-QEFSCIVI---QDEDGNPIALPPTGI------ 338
Query: 120 SVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
V+ D F+YR KYLP TP P + IR L+ L +ARIDG
Sbjct: 339 ---VKGND-FFDYRSKYLPGMSRKI-TPIDIPGEQVELIRSECCRLYSTLQFNVYARIDG 393
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239
+ P G + D N SGM +SF F QA+++G + S L I
Sbjct: 394 FISPE-----------------GEVFLNDPNTTSGMMPSSFFFHQAAEIGLNPSQFLTYI 436
Query: 240 IGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMS 299
I + + L + +E + +E I+ + V+ GG +SER +S+ S
Sbjct: 437 IRTSIQERIKDGKRSLRYKQLLATLDQAISSEKNSSKEKIK-IAVVMGGYSSERHISVES 495
Query: 300 GTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359
G N++ L + + P L S D R+ + LP +++L+ ++
Sbjct: 496 GRNIFEKLSSSTKYQPLPVFLTGS--------------DEQHRL-FILPINILLKDNADD 540
Query: 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKH-----SWFTGFDIADELPMRHSINE 414
+ I F H + ++E + K S + I D P S E
Sbjct: 541 IREKVIN--------FKGH------HPIIEHIAKETESISSRYVSNAIKD--PKEISYKE 584
Query: 415 WIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
+L VFIA+HG GEDG++Q LE +PY G G+ +S+ ++K T+ L
Sbjct: 585 LSELVD----GVFIALHGRPGEDGSMQKELEKYQLPYNGSGIQSSQITINKFETNRILR- 639
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC---KTLCVKPARDGCSTGVARLC 531
+ G+ N + K++ L D +L S+++ + KP+ DGCS+ V ++
Sbjct: 640 --EHGISVANHRMVYKQEWL-----DAGEKLLSEIESGFIYPIIAKPSDDGCSSAVKKIK 692
Query: 532 CAEDLTVYVKAL--EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
++L Y + + EE I + S G+ E F + D L
Sbjct: 693 NRDELRAYTRLMFGEEA---IQGSVSSSVLGL----------KYNEEFPQKDYFLI---- 735
Query: 590 TNKNADRLMWKGNSR-WVEITVGVIGKCGSMHSL-----MPSVTVKESGDILSLEEKFQG 643
+ L+ KGN++ ++E+T G++ + ++ PS ++ +GD+LSLEEKF
Sbjct: 736 -----EDLVSKGNAKHFLEVTGGLMTRFNDKGNVEYEIFEPSESLA-TGDVLSLEEKFLA 789
Query: 644 GTGINLTPPPASIMST---EALDKCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLI 697
G G N+TP + + + + ++ +A L ++G++RIDAFV V + E +I
Sbjct: 790 GEGQNITPARYTTNKADYEQVASEVRATLKRVAEVLNIQGYARIDAFVRVFENNRSETII 849
Query: 698 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
IEVN++PGMTP+T + HQ P+ F +L G ER
Sbjct: 850 IEVNSLPGMTPATCIFHQTAING--YKPYDFIDNILTFGIER 889
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 37/184 (20%)
Query: 284 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 343
+IFGG + ER++S G V+ NL DI T + S+ +D
Sbjct: 5 IIFGGQSREREISFAGGRTVYDNLN--KDIFTTVPIFVDSLGQFILLD------------ 50
Query: 344 VWSLPYSLVLR--HTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
W Y +R + E L I QV + + L K
Sbjct: 51 -WQYIYKGTIRDFYPPFEFLPKSIHGF-------------QVYVESLGDLPKEERDAMIQ 96
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
+ E I A F+A+HG GEDG +Q +L+ +PY+G G++ S
Sbjct: 97 KVGRKIEPSDLKELIDFA-------FLALHGPYGEDGAIQGMLDWNNIPYSGSGILPSAI 149
Query: 462 CMDK 465
++K
Sbjct: 150 GINK 153
>gi|379729222|ref|YP_005321418.1| D-alanine--D-alanine ligase [Saprospira grandis str. Lewin]
gi|378574833|gb|AFC23834.1| D-alanine--D-alanine ligase [Saprospira grandis str. Lewin]
Length = 902
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 190/693 (27%), Positives = 304/693 (43%), Gaps = 135/693 (19%)
Query: 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 134
++ V++E F+EG EF+ +V+ G + L PTE+ ++ K+ +F+YR
Sbjct: 304 EESVLLEGFIEG-REFSCVVIQDEDG---QAIALPPTEI---------IKGKE-LFDYRS 349
Query: 135 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 194
KYL TP P I +IR+ LF+ L +ARIDG+
Sbjct: 350 KYLAGLSRKL-TPIDLPEAQIQAIRQECERLFRFLEFDVYARIDGFIQAD---------- 398
Query: 195 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA-------CSRF 247
G I+ D N SGM +SF F QA+++G + S+ L II + C R
Sbjct: 399 -------GRIILNDPNTTSGMLPSSFFFHQAAEIGLNPSHFLSFIIHRSLLARSRKCLR- 450
Query: 248 PNLASYNSVSSHLPGRSSGSKPTEALNKREG----IREVFVIFGGDTSERQVSLMSGTNV 303
PN +Y + + L + + EG +++V VI GG +SER +S+ SG N+
Sbjct: 451 PN--NYGQLLARLESE---------MQRLEGEVAELQKVAVILGGYSSERHISVESGRNI 499
Query: 304 WLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAA 363
+ L + D P L + + ++ LP +L+L+ +++
Sbjct: 500 YEKLASSADYLPFPVFLTGK---------------AEDQQLYELPINLLLKDNADDI--- 541
Query: 364 CIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA---- 419
L N V+ +++ +++ + IA++ R S + L+
Sbjct: 542 ------------RDKLLNYKVHPIIQKIRQETA----HIANQFSGRSSRLDPRSLSFDEL 585
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
E FIA+HG GEDG LQ L G+ + G ++ +DK + L L G
Sbjct: 586 SEETRLAFIALHGRPGEDGALQRELAKRGIAFNGSEADSAALTIDKYQS---LQKLKAAG 642
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
+ + + K D L P + + KL L KP DGCS+ V ++ +L +
Sbjct: 643 LPVTEQILLSKSDYLAQPEQSL-QQAGEKLGW-PLIAKPVDDGCSSAVKKIKNEAELEAF 700
Query: 540 VKAL--EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
+ AL EE +L P + R + + P + + E VE + L
Sbjct: 701 LAALFREEDIL--PKIAQERLAILPKEEFPQKQYALLEQLVEQKDAL------------- 745
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLM-----PSVTVKESGDILSLEEKFQGGTGINLTPP 652
++E+TVG++ + S+ PS T+ SG+ILSLEEKF G G N+TP
Sbjct: 746 ------HFLEVTVGLLCHHEADGSIRYEVFEPSETLA-SGEILSLEEKFLAGEGQNITPA 798
Query: 653 PASIMSTEALD---KCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLIIEVNTVPGM 706
++ E + K +E A L + G++RIDAFV + E L+IEVN++PGM
Sbjct: 799 RLAVGELEYAPLAAQIKADLEQAARILGVTGYARIDAFVRIYADGRAETLVIEVNSLPGM 858
Query: 707 TPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
TP+T + HQ P F R++L G ER
Sbjct: 859 TPATCIFHQTAING--YQPFDFIRQILTFGQER 889
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 70/335 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
F+++HG GEDG LQ +LEA G+PY+G G+ AS MDK + K
Sbjct: 114 AFLSLHGEWGEDGQLQGMLEALGIPYSGSGIRASSLGMDK----------------SFQK 157
Query: 486 DVRRKEDLLKTPIVDIWH-----ELTSKLQCKT-----LCVKPARDGCSTGVARLCCAED 535
+ + PI IW EL + Q K L V+P+ G S GV + AED
Sbjct: 158 KMMQAGGFESPPIQQIWAKDWSGELPNLEQLKKEMGFPLVVRPSNQGSSIGVRIVEQAED 217
Query: 536 LTVYVKALEECLLRIPPNS-----FSRAHGM----------------IEMPNPPPEI-LI 573
L + ALE + ++ SR + +E+ P + L+
Sbjct: 218 L---LDALENAFFGLEISAEDWQQMSREEQIQWMRKLLDIRSGLGFPLEVEGPKKDKQLL 274
Query: 574 FEP---FVETDEILFSSQS------TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 624
+ P D+ L S + + ++ +G E + VI +P
Sbjct: 275 YHPEQLLALLDKELGQGHSPKLRLQSQYREESVLLEGFIEGREFSCVVIQDEDGQAIALP 334
Query: 625 SVTVKESGDILSLEEKFQGGTGINLTP---PPASIMSTEALDKCKQRIELIANALQLEGF 681
+ + ++ K+ G LTP P A I + +Q E + L+ + +
Sbjct: 335 PTEIIKGKELFDYRSKYLAGLSRKLTPIDLPEAQIQA------IRQECERLFRFLEFDVY 388
Query: 682 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+RID F+ D G +++ + NT GM PS+ HQA
Sbjct: 389 ARIDGFIQAD-GRIILNDPNTTSGMLPSSFFFHQA 422
>gi|424841345|ref|ZP_18265970.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Saprospira grandis
DSM 2844]
gi|395319543|gb|EJF52464.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Saprospira grandis
DSM 2844]
Length = 902
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 193/696 (27%), Positives = 299/696 (42%), Gaps = 141/696 (20%)
Query: 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 134
++ V++E F+EG EF+ +V+ G + L PTE+ ++ K+ +F+YR
Sbjct: 304 EESVLLEGFIEG-REFSCVVIQDEDG---QAIALPPTEI---------IKGKE-LFDYRS 349
Query: 135 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 194
KYL TP P I +IR+ LF+ L +ARIDG+
Sbjct: 350 KYLAGLSRKL-TPIDLPEAQIQAIRQECERLFRFLEFDVYARIDGFIQAD---------- 398
Query: 195 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA-------CSRF 247
G I+ D N SGM +SF F QA+++G + S+ L II + C R
Sbjct: 399 -------GRIILNDPNTTSGMLPSSFFFHQAAEIGLNPSHFLSFIIHRSLLARSRKCLR- 450
Query: 248 PN-----LASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTN 302
PN LA S L G + +++V VI GG +SER +S+ SG N
Sbjct: 451 PNNYGQLLAQLESEMQRLDGEVAE------------LQKVAVILGGYSSERHISVESGRN 498
Query: 303 VWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLA 362
++ L + D P L + + ++ LP +L+L+ +++
Sbjct: 499 IYEKLASSADYLPFPVFLTGK---------------AEDQQLYELPINLLLKDNADDI-- 541
Query: 363 ACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLA--- 419
L N V+ +++ +++ + IA + R S + L+
Sbjct: 542 -------------RDKLLNYKVHPIIQKIRQETA----HIAQQFSGRSSRLDPRPLSFDE 584
Query: 420 -KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
E FIA+HG GEDG LQ L G+ + G ++ +DK + L L
Sbjct: 585 LGEESRLAFIALHGRPGEDGALQRELAKRGIAFNGSEADSAALTIDKYQS---LQKLKAA 641
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
G+ + + K D L P + K L KP DGCS+ V ++ +L
Sbjct: 642 GLPVTEQILLSKNDYLAQPEKSLQQ--AGKKLGWPLIAKPVDDGCSSAVKKIKNEAELEA 699
Query: 539 YVKAL--EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
++ AL EE LL P + R + + P + + E VE + L
Sbjct: 700 FLAALFREEDLL--PKIAQERLAILPKEEFPQKQYALLEQLVEQKDAL------------ 745
Query: 597 LMWKGNSRWVEITVGVIGKC-----GSMHS--LMPSVTVKESGDILSLEEKFQGGTGINL 649
++E+TVG++ C GS+ PS T+ SG+ILSLEEKF G G N+
Sbjct: 746 -------HFLEVTVGLL--CHHEADGSIRYEVFEPSETLA-SGEILSLEEKFLAGEGQNI 795
Query: 650 TPPPASIMSTEALD---KCKQRIELIANALQLEGFSRIDAFVNV---DNGEVLIIEVNTV 703
TP ++ E + K +E A L + G++RIDAFV + E L+IEVN++
Sbjct: 796 TPARLAVGKLEYAPLAAQIKVDLEQAARILGVTGYARIDAFVRIYADGRAETLVIEVNSL 855
Query: 704 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
PGMTP+T + HQ P F R++L G ER
Sbjct: 856 PGMTPATCIFHQTAING--YQPFDFIRQILTFGQER 889
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 74/337 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
F+++HG GEDG LQ +LEA G+PY+G G+ AS MDK + K
Sbjct: 114 AFLSLHGEWGEDGQLQGMLEALGIPYSGSGIRASSLGMDK----------------SFQK 157
Query: 486 DVRRKEDLLKTPIVDIWH-----ELTSKLQCKT-----LCVKPARDGCSTGVARLCCAED 535
+ + PI IW EL + Q K L V+P+ G S GV + ED
Sbjct: 158 KMMQAGGFESPPIQQIWAKDWSGELPNLEQLKKEMGFPLVVRPSNQGSSIGVRIVNQPED 217
Query: 536 LTVYVKALEECLLRIPPNS-----FSRAHGM----------------IEMPNPPPEI-LI 573
L + ALE+ + ++ SR + +E+ P + L+
Sbjct: 218 L---LDALEDAFFGLEISAEDWQQMSREEQIQWMRKLLDIRSGLGFPLEVEGPKKDKQLL 274
Query: 574 FEPFVETDEILFSSQSTNKNADRLMWKGNSR-----------WVEITVGVIGKCGSMHSL 622
+ P E LF + ++ +L + R E + VI
Sbjct: 275 YHP--EQLLALFDKELGQGHSPKLRLQSQYREESVLLEGFIEGREFSCVVIQDEDGQAIA 332
Query: 623 MPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIMSTEALDKCKQRIELIANALQLE 679
+P + + ++ K+ G LTP P A I + +Q E + L+ +
Sbjct: 333 LPPTEIIKGKELFDYRSKYLAGLSRKLTPIDLPEAQIQA------IRQECERLFRFLEFD 386
Query: 680 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
++RID F+ D G +++ + NT GM PS+ HQA
Sbjct: 387 VYARIDGFIQAD-GRIILNDPNTTSGMLPSSFFFHQA 422
>gi|313675049|ref|YP_004053045.1| d-alanine--d-alanine ligase [Marivirga tractuosa DSM 4126]
gi|312941747|gb|ADR20937.1| D-alanine--D-alanine ligase [Marivirga tractuosa DSM 4126]
Length = 894
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 193/709 (27%), Positives = 315/709 (44%), Gaps = 146/709 (20%)
Query: 65 KAKGIILEGID--DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD 122
K + I L+ ID + +++E F+EG EF+ IV+ + P+ L PTE+
Sbjct: 290 KKQSIKLKAIDSENSLLIESFIEG-KEFSCIVI---QDENERPIALPPTEI--------- 336
Query: 123 VREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGW 180
R+ +F+YR KYLP ++++ TP P +I IR + LF+ L + +ARIDG+
Sbjct: 337 -RKGKDVFDYRSKYLPGISRKI---TPIDAPQDIIEKIRSQCAALFKALQIDVYARIDGF 392
Query: 181 FLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
T+ G + D N SGM +SF F QA+++G + S L II
Sbjct: 393 I-----------------TKEGKVFLNDPNTTSGMLPSSFFFHQAAEIGLNPSQFLSYII 435
Query: 241 GHACSRFPNLASYNSVSSHLPGRSSGSKPTEALN--KREGIRE--VFVIFGGDTSERQVS 296
+ A + H + + AL K+E ++ V VI GG ++ER +S
Sbjct: 436 RTSLQ-----ARLKTGKHHFELQKMIKQLDAALEGLKKEAQKKINVGVIMGGFSTERHIS 490
Query: 297 LMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356
+ SG N++ L + P L+ + D ++ LP +++L+
Sbjct: 491 VESGRNIYEKLSSSEKYLPIPIFLSGNEDQHE---------------LYVLPINIMLKDN 535
Query: 357 TEEV--------LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPM 408
+++ + I I+ + + T + ++V LKK S+ DI D
Sbjct: 536 ADDIKDKIQNYEVHPIISQIKFESSEITEKYVG--IENIV--LKKISYHDLPDIID---- 587
Query: 409 RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
FIA+HG GEDG +Q+ LE +PY G V +SK ++K T
Sbjct: 588 ----------------VTFIALHGRPGEDGAVQAELEKLNIPYNGSDVESSKITINKYDT 631
Query: 469 SLALNH----LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
+ L + +AD ++ NK KE I I +L+ L KPA DGCS
Sbjct: 632 NEILKNAGISVADHRLVFENKWQSNKE----AEIAAIEEQLSY-----PLIAKPADDGCS 682
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
+ V ++ +L + GM M P E + E ++
Sbjct: 683 SAVKKIKNKAELEAFA-------------------GM--MFRPQAEFI--EDLANILKLK 719
Query: 585 FSSQSTNKN---ADRLMWKGNSRW-VEITVGVI---GKCGSM-HSLMPSVTVKESGDILS 636
+ + KN + L+ K ++++ +EIT G++ + GS+ + + G++LS
Sbjct: 720 KNEEFPQKNFFLLEELIEKKDAKYFLEITGGLLTHFKEDGSIEYEIFEPSEALAGGEVLS 779
Query: 637 LEEKFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 693
LEEKF G G N+TP P + ++ K ++ A L + G++RIDAFV V
Sbjct: 780 LEEKFLAGEGQNITPARYTPQAENYKVVAEQVKATLKKTAEVLNITGYARIDAFVRVYED 839
Query: 694 ---EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
E +IIEVN++PGMTP+T + HQ P+ F K+L G+E+
Sbjct: 840 LSVETIIIEVNSLPGMTPATCIFHQTAING--YKPYDFIDKILAFGTEK 886
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 192/479 (40%), Gaps = 77/479 (16%)
Query: 284 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 343
+ FGG + ER++S G V+ NL S DA DS
Sbjct: 5 IFFGGQSREREISFAGGRTVYDNLN------------------KSIFDAVPIFIDSKGHF 46
Query: 344 V---WSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
V W Y +R + P S L Q+ + ++ L W
Sbjct: 47 VLLDWQYIYKGTIR-----------DFYPPVNFLPKSDLPVQIYAESLKNLSDEDWDK-- 93
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
+ E+ + + +++ K++ F+A+HG GEDG +Q +LE G+P++G G++ S
Sbjct: 94 -LIAEVGQKINPSDF----KKHIDFAFLALHGPYGEDGNIQGILEWNGIPFSGAGILPSA 148
Query: 461 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
+ K+A L G + + D P +I+ L +L L +K
Sbjct: 149 IGISKIAQR---QFLQQAGFEGPKSRILNQNDWNHQPHENIYQNLKKELGL-PLVIKAPH 204
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPP-----NSFSRAHGM------------IE 563
G S GV+ + +D + K +++ + N +S+ + I
Sbjct: 205 QGSSIGVS-ILNEDDPNKFEKLVQKSFFELEITEDEWNGYSQEEKIGFIAKLVDIREGIG 263
Query: 564 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK---CGSMH 620
+P E +++ P E E L ++ + K + +L + + I + GK C +
Sbjct: 264 LPVIAEEGMLYTP-DELLEFLNNTFTAKKQSIKLKAIDSENSLLIESFIEGKEFSCIVIQ 322
Query: 621 S------LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN 674
+P +++ D+ K+ G +TP A + ++K + + +
Sbjct: 323 DENERPIALPPTEIRKGKDVFDYRSKYLPGISRKITPIDA---PQDIIEKIRSQCAALFK 379
Query: 675 ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 733
ALQ++ ++RID F+ + G+V + + NT GM PS+ HQA + + P QF ++
Sbjct: 380 ALQIDVYARIDGFITKE-GKVFLNDPNTTSGMLPSSFFFHQAA--EIGLNPSQFLSYII 435
>gi|384251700|gb|EIE25177.1| hypothetical protein COCSUDRAFT_61418 [Coccomyxa subellipsoidea
C-169]
Length = 1620
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 136/503 (27%), Positives = 235/503 (46%), Gaps = 79/503 (15%)
Query: 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTP---------------------- 317
+ ++++ GGD+SER+ SL SG WL L+ IEV P
Sbjct: 1060 QRIWILTGGDSSERRESLASGLAAWLRLR--TQIEVQPELFLLAPRNAGADLAERKGTLL 1117
Query: 318 -------CLLASSIDCSSGMDA-NITDP-----DSSSRVVWSLPYSLVLRHTTEEVLAAC 364
++ + D + NI P + VW++PY+ L T E++ C
Sbjct: 1118 QRRAELLAMVGAEEDLPEELQVQNIRRPPLRPVEPHVMGVWAVPYAAALHATPEDIHEVC 1177
Query: 365 IEAIEPDRAAFTSHLRNQVVNDLVEGLKKH---------------SWFTGFDIADELPMR 409
A+ RAA T+ R + + L+K+ +W + P
Sbjct: 1178 ERAL---RAANTADHRRAEEDVAEDELRKYVAQQLVTAEVHGVAGTWGGNPNQLPPPPRY 1234
Query: 410 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 469
+ + A+ QA V +A+HGG+GE+GT+Q+LL+ GVP TGP A+ +DK AT+
Sbjct: 1235 MDLTNFAMEAEAAQAVVLLALHGGMGENGTVQALLQGYGVPITGPSWDAASVAIDKAATA 1294
Query: 470 LALNHLADLGVLTINK-DVRRKEDLLKTPIVDIWHELTSKLQ-----CKTLCVKPARDGC 523
L L V T K V + L + H L ++Q +L +KPA DG
Sbjct: 1295 EVLAELEVHNVSTAPKFPVTLQRLLAAADDEEECHALFEEMQDAIGGSNSLVIKPAADGG 1354
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIP------PNSFSRAHGMIEMPNPPPEILIFEPF 577
VARL DL Y A+ + IP P S +A I +P PP + + EPF
Sbjct: 1355 PAAVARLGSHTDLGWYACAVADRDAAIPAGVLEQPPSRQQAGAPIPLPLTPPPVFVVEPF 1414
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
V+T+ + + + + + W G+SRW+ +++G++G+ G+M +L P++ + +
Sbjct: 1415 VDTESVRMVTGEDGRPS--IEWTGDSRWLHVSIGLLGQVGTMRALGPTLKLPDQ------ 1466
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
G + +TPPP ++ + L + R E++A+AL L G + ++A ++ ++ ++++
Sbjct: 1467 ----TGMQTVRVTPPPGDLVREDVLAGVRARAEMVADALGLNGAASLEALMHAESADLVL 1522
Query: 698 IEVNTVPGMTPSTVLIHQALSEQ 720
IE N +P ++P + L QA+ ++
Sbjct: 1523 IEANAIPDISPGSDLFQQAMMDE 1545
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 52/217 (23%)
Query: 24 LSNWFVTNKLDPNSGKVVVKPTRAGSS----IGVTVAYGVIDSLKKAKGIILEGIDDRVV 79
L NW LD +SG V KP G V +A G+ + A+ ++ +G + VV
Sbjct: 579 LWNWAQAAGLDAHSGVFVAKPGGVGRGDRPGANVVMARGLPAAALAARDLMEQG-HESVV 637
Query: 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL------------QFQGSVDVREK- 126
VE + G + V++ G P+ LLP++ EL + + RE
Sbjct: 638 VERHMGGAVRVSVAVVEGREG----PIALLPSQEELICPEATFLDAGLEAERQAARREGY 693
Query: 127 -----DAIFNYRRKYL-----------------PTQQVAYHTPPRFPIVVINSIREGASL 164
+A+ +R L P ++ PPR P ++ +R+GA+
Sbjct: 694 SEEQIEAVLAGQRDALLQDTHGMSYAQCLEEDFPDTRLRQSCPPRLPKELVWGLRQGAAR 753
Query: 165 LFQ-------RLGLCDFARIDGWF-LPSSTHVFSSSE 193
LF+ LGL D A I+GW LP SS++
Sbjct: 754 LFKASHLLSPELGLRDAAVIEGWVELPKEEPASSSAD 790
>gi|76880178|dbj|BAE45861.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
Length = 417
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 115/166 (69%), Gaps = 1/166 (0%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
M+ GF T+P FL++ +V+ + L WF N ++ NSG+VVVKP R+GSS+GV+VA G+
Sbjct: 246 MAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARSGSSVGVSVAEGLD 305
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ-FQG 119
+++ A+ + +G +DRVV+E+F EG EFTA+VLDVG G + PV L PTEVEL
Sbjct: 306 TAVQHAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETRPVALFPTEVELSGLDY 365
Query: 120 SVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLL 165
D + AIFNYRRKYLPT+QV+YHTPPRF IN IR A+ +
Sbjct: 366 ESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAAFI 411
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
F IA S E+++ + VF A+HG GEDG +Q+LLE+ G+PY G G A+
Sbjct: 174 FKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAAA 233
Query: 460 KTCMDK--VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI-----WHELTS-KLQC 511
+ DK A +A + A L + L++ VDI W E +
Sbjct: 234 QVAFDKYDAAAEMAWHGFATLPIF-----------LVENGKVDINRLRGWFEDNNINANS 282
Query: 512 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ VKPAR G S GV+ AE L V+ E
Sbjct: 283 GRVVVKPARSGSSVGVS---VAEGLDTAVQHAE 312
>gi|406908076|gb|EKD48698.1| hypothetical protein ACD_64C00179G0003 [uncultured bacterium]
Length = 740
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 176/706 (24%), Positives = 300/706 (42%), Gaps = 175/706 (24%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKG--IILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VVKP GSSIGV++ + D + + +I V++E L G EF+ + L
Sbjct: 176 VVKPQNEGSSIGVSIVWNEKDLVAAVQSACMIHPEYPQAVLIEERL-SGMEFSCVTLVDY 234
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
P L+PTE+ V D +F+Y++KY+P + + + TPPR I +I
Sbjct: 235 KNNTLLP--LVPTEI-------VPDAGTD-LFDYKQKYMPGRAMKF-TPPRCSPETIAAI 283
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
++ + + L + +RIDG+ T+ GT++ D N SGM +
Sbjct: 284 QDTCMRIMRILDIQTISRIDGFV-----------------TQDGTVVIVDPNTFSGMAPS 326
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREG 278
SF+F++A+++ SH+ ++ +I R+ +++ L +K + N +
Sbjct: 327 SFVFREAAELNMSHTALINHLIETDIHRY-------NITETL------TKQEQQQNSMKK 373
Query: 279 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPD 338
V V+ GG + ER++SL SG N+ L ++TP +
Sbjct: 374 KLRVGVLLGGASHEREISLESGRNITYKLSP-ESYDITPLFV------------------ 414
Query: 339 SSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFT 398
S +++L S ++R++T E+ A +++P++ L Q
Sbjct: 415 SRDNTLYTLTQSQLVRNSTAEIAA----SLKPEQQIRWQSLPEQ---------------- 454
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
FD +F +HGG GE+G++Q +LE +PY G V A
Sbjct: 455 -FDF-----------------------IFNGLHGGAGENGSVQGMLELLDLPYNGSSVFA 490
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL--TSKLQCKTLCV 516
S CMDK T+ L G N + K K I + HEL + V
Sbjct: 491 SALCMDKYKTA---EFLRASGFSVPNHYLIHK----KAWIANQAHELEQIKHIGAGPYIV 543
Query: 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576
KP+ DGCS V+ ++ +V A+ + + ++ E
Sbjct: 544 KPSDDGCSVMVSSARTQSEIIQHVNAIVDS---------------------GKQTVLIEE 582
Query: 577 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 636
++ E +TVGV+G S +L PS + ++G +LS
Sbjct: 583 YLTGME-------------------------LTVGVLGN-ESPRALPPSQAIAQAG-VLS 615
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN------V 690
+EEKF G G N TP P + + L ++ +E + A+ G++RID F
Sbjct: 616 IEEKFLPGAGENQTPAP---LPSATLQLVQKTMENVFKAVGCRGYARIDCFYQTAQHSPT 672
Query: 691 DNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 736
+ V+I+E+NT+PG+TP+T + HQA + + P F ++++LG
Sbjct: 673 GHERVVILEINTLPGLTPATCIFHQA--AEIGLRPMDFIDQIVELG 716
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 129/296 (43%), Gaps = 55/296 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V+IA+HG EDG LQ LE G+PY G +AS CMDK L G+ T
Sbjct: 88 VYIAMHGRYAEDGILQGALELLGIPYLGSSRLASALCMDKTRVKTVLK---SHGIATPQG 144
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLTVYVK 541
+ L I I ++ ++LQ K + VKP +G S GV+ + +DL V+
Sbjct: 145 ITLEAHEALT--ITTIQQDVIAQLQKKNIALPWVVKPQNEGSSIGVSIVWNEKDLVAAVQ 202
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+ C++ P P +LI E + FS + + +K
Sbjct: 203 S--ACMIH---------------PEYPQAVLIEERLSGME---FSCVTL------VDYKN 236
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLTPPPASIMSTE 660
N ++ L+P+ V ++G D+ ++K+ G + TPP S +
Sbjct: 237 N---------------TLLPLVPTEIVPDAGTDLFDYKQKYMPGRAMKFTPPRCSPETIA 281
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
A+ RI I L ++ SRID FV D G V+I++ NT GM PS+ + +A
Sbjct: 282 AIQDTCMRIMRI---LDIQTISRIDGFVTQD-GTVVIVDPNTFSGMAPSSFVFREA 333
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 30/227 (13%)
Query: 37 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
+G +VKP+ G S+ V+ A + ++ I+ G V++E +L G + L
Sbjct: 538 AGPYIVKPSDDGCSVMVSSARTQSEIIQHVNAIVDSG-KQTVLIEEYLTG------MELT 590
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
VG + P L P++ Q + + K+LP TP P +
Sbjct: 591 VGVLGNESPRALPPSQAIAQ----------AGVLSIEEKFLPGAG-ENQTPAPLPSATLQ 639
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+++ +F+ +G +ARID ++ ++ T ++ +IN + G+
Sbjct: 640 LVQKTMENVFKAVGCRGYARIDCFY----------QTAQHSPTGHERVVILEINTLPGLT 689
Query: 217 QTSFLFQQASKVGFSHSNILRTII--GHACSRFPNLASYNSVSSHLP 261
+ +F QA+++G + + I+ G A +A + +S+H P
Sbjct: 690 PATCIFHQAAEIGLRPMDFIDQIVELGLAAHHADGIAPSHRISAHTP 736
>gi|145343359|ref|XP_001416315.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576540|gb|ABO94608.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 683
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 153/557 (27%), Positives = 250/557 (44%), Gaps = 93/557 (16%)
Query: 212 ISGMEQT-SFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPT 270
+SG + S +F A+ VG S +++ ++ +A SR AS + +
Sbjct: 180 VSGTARAWSKMFVHAAAVGLSMESVIEHLVKNATSR---EASTRKIVAA--------PAP 228
Query: 271 EALNKREGIREVFVIFGGDTS--ERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSS 328
+ V+V+FGG S +R S +G N++L L+ I+VTP LL S+
Sbjct: 229 APASTSSASMRVYVLFGGAASGGDRLSSCYAGRNLYLTLRNIPTIDVTPVLLMPPAANSN 288
Query: 329 GMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLV 388
G+ + P W LPY+ + + +A + PD F + R +
Sbjct: 289 GL---VDAP------AWRLPYAFAV--NPAQWSSADVPPRMPDLGRFATARRVRAE---- 333
Query: 389 EGLKKHSWFT--GFDIA---DELPMRHSINEWIKLAKENQATVFIAVHGGIGE-DGTLQS 442
L+K+ W + D A D P + + LA A VF A G +GE DG+LQ
Sbjct: 334 --LEKYLWISPPRDDAALAFDATPRVSRLGALLSLAASEGAIVFNA--GVVGEPDGSLQQ 389
Query: 443 LLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--------------- 487
L + G YTG G +AS+ C DK ATS AL ++ D+GV +NK
Sbjct: 390 LCVSSGAAYTGCGPLASRVCADKAATSKALGNMRDVGVGCLNKRFVPTATLVSKATEESG 449
Query: 488 ---RRKEDLLKTPIVDIWHELT-SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R + + K +D+ L + + + VKP GV RL D+ Y +++
Sbjct: 450 WGGRARAESAKRLWLDVVGSLGGASATARGVIVKPVTKSSFGGVRRLMNDNDMLAYAESI 509
Query: 544 EECLLRIPPNSFSRAHGMI-EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW--K 600
+ A G E N +FEPF + E+ S + + ++
Sbjct: 510 AAAM----------ASGQFPEGTNLAARGYVFEPFFDAAEV-----SIRGDGEIVLDPDD 554
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
G+ RW+EI + V G K G +H+ PSV ++ G + I+ + ++S
Sbjct: 555 GSKRWIEIEIVVFGDKPGKLHAFTPSVRARD------------GRSAIDKSK---LVLSE 599
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-TPSTVLIHQALS 718
+ ++R + +ALQ+EG+++++AF N+DNGE+++I+V+TVP M +PS L QAL+
Sbjct: 600 RVVGLVRERARRVGDALQVEGYAKVNAFANLDNGEMIVIDVDTVPNMSSPSAPLFEQALA 659
Query: 719 EQPPMYPHQFFRKVLDL 735
E P+ F + L L
Sbjct: 660 EDSPVDAETFCARALSL 676
>gi|406025304|ref|YP_006705605.1| hypothetical protein CAHE_0408 [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432903|emb|CCM10185.1| Putative uncharacterized protein [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 439
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 140/474 (29%), Positives = 212/474 (44%), Gaps = 76/474 (16%)
Query: 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 339
+++ V+ GG T ER VSL SG N++ L A N E P L+ S +
Sbjct: 3 KKIGVLMGGFTPERHVSLESGRNIYSKLAASNQYEALPLFLSGS---------------T 47
Query: 340 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRA-AFTSHLRNQVVNDLVEGLKKHSWFT 398
+ ++ LP +L+L+ ++V A + A A + +R + V+ + + K + FT
Sbjct: 48 KAFRIFILPAALLLKDNADDVHDALLHPTRFRAAEALLTVIRQEAVS-ITKNYAKDAIFT 106
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
A+EL ++ E I +FIA+HG GEDGTLQ +LE +PY G G+
Sbjct: 107 ----AEELTFS-ALKERIDF-------IFIALHGRPGEDGTLQKILEKYDIPYNGSGIAT 154
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
+ +DK AT+ LA G + V ++D + I + L + KP
Sbjct: 155 TALTIDKYATN---QFLAKKGFQVAQQLVVTQKDWDDDQVTTI--HAVANLFTYPIIAKP 209
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPP---NSFSRAHGM-IEMPNPPPEILIF 574
DGCS GV R+ ++ LT Y A R P N + G+ + P + +
Sbjct: 210 VDDGCSAGVMRIVNSDMLTAYASA----TFRDKPLMSNKVMQPLGLQVADYIPQQKRFLL 265
Query: 575 EPFVETD-EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 633
E +E D + L ++T + G + + PS TV
Sbjct: 266 EALIEKDPKALACLETTTGLLTHIDHNGKTLY--------------EVFEPSETVAVDA- 310
Query: 634 ILSLEEKFQGGTGINLTPPP-------ASIMSTEALDKCKQRIELIANALQLEGFSRIDA 686
ILSLEEKF G G N+TP A+I+S K K + IA L ++G++RIDA
Sbjct: 311 ILSLEEKFLAGEGHNITPARFDGNAKVAAIIS----KKVKHELANIATVLNIQGYARIDA 366
Query: 687 FVNV---DNGEVLIIEVNTVPGMTPSTVLIHQ-ALSEQPPMYPHQFFRKVLDLG 736
FV + EV IIE+N +P MTP+T + HQ AL+ P F ++ G
Sbjct: 367 FVKIYPHQKIEVWIIEINALPAMTPATCIFHQCALNGYTPF---DFIHAIIQYG 417
>gi|308800946|ref|XP_003075254.1| unnamed protein product [Ostreococcus tauri]
gi|116061808|emb|CAL52526.1| unnamed protein product, partial [Ostreococcus tauri]
Length = 561
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 145/543 (26%), Positives = 231/543 (42%), Gaps = 88/543 (16%)
Query: 221 LFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSSGSKPTEALNKREGIR 280
+F A+ VG + L + +A R A +S S SK +A ++
Sbjct: 68 MFAHAATVGLPIESALEHLAKNAMHR----AGTRKISVSAQATDSPSKTAKAAGQK---M 120
Query: 281 EVFVIFGG---DTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDP 337
V+++FGG +T+ R S +G ++L L+ + I+ TP LL + S G+++ + P
Sbjct: 121 RVYIVFGGQSSNTTSRHKSCYTGRQLYLTLRNVDTIDATPVLL--TPQASRGLNSLVDAP 178
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEG-LKKHSW 396
W LPY+ + + + PD +++ R V G L K+ W
Sbjct: 179 ------AWRLPYAWAMNSSQWDA------PKPPDLGRYSTSRR-------VRGELDKYLW 219
Query: 397 FT--GFDIA---DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPY 451
T D A + P + + LA A VF V +DG+LQ L + GV Y
Sbjct: 220 VTPPKDDPALAFEATPRVSRLGALLSLAASEGAIVFNCV----ADDGSLQQLCTSAGVAY 275
Query: 452 TGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD----------- 500
TG G +AS+ DKVA + L L G+ +NK LL + +
Sbjct: 276 TGCGPLASRVSADKVALAKTLGSLRSEGIACLNKRFVPAATLLSKALEESSWGGRARGEG 335
Query: 501 ---IWHELTSKLQCKTLC-----VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPP 552
IW ++ L V P DG S G A +D A E LL
Sbjct: 336 VKRIWLDVVGSLGGPAALPHGARVSPVADG-SIGSA----FDDFASSRVADENELLAFAE 390
Query: 553 NSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGV 612
+ ++ H P +FE + E E+ +S + + S+WVEITVGV
Sbjct: 391 DQANK-H--------PVRGYLFESYFEPAEVTLASDGES----LALSDSKSKWVEITVGV 437
Query: 613 IG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 671
G + G++ + PSV + S L + + + +++ + ++R
Sbjct: 438 FGDRPGTLKAFAPSVRARTSDPRLK--------SHVFVIDIAGDVLNARVAAQARERARR 489
Query: 672 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFR 730
+A +Q+EGF+ IDA+ NVD GE+++ V+TVP MT P+ + QAL E PP+ F
Sbjct: 490 VAELMQVEGFASIDAYANVDTGEIVVAAVDTVPDMTCPNAPIFEQALMEDPPIDAEGFCV 549
Query: 731 KVL 733
K+L
Sbjct: 550 KLL 552
>gi|189502683|ref|YP_001958400.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498124|gb|ACE06671.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
5a2]
Length = 421
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 212/478 (44%), Gaps = 89/478 (18%)
Query: 284 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 343
+I GG ++ER +S+ SG NV+ L + P L + P S
Sbjct: 5 IIMGGFSAERHISVESGRNVYEKLASSGTYTPIPIFLTGT-------------PLQHS-- 49
Query: 344 VWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIA 403
++ LP ++L+ + +++ ++ I T+ ++ +++ + F +
Sbjct: 50 LFILPIHILLKDSADDI-HERLKHISTTTDNSTNWTEEPAIDSIIK-----KYVGSFTMQ 103
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
P + E L +VFIA+HG GEDGTLQ++LE G+PY G GV + +
Sbjct: 104 ---PTAITYQELAHLVD----SVFIALHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTI 156
Query: 464 DKVATSLALN----HLADLGVLTINK-------DVRRKEDLLKTPIVDIWHELTSKLQCK 512
DK AT+ L+ ++A+ V+TI++ + E K P +
Sbjct: 157 DKFATNRFLHKHGIYVANQAVVTIDQWKNNTPATIETIEATFKYPFI------------- 203
Query: 513 TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 572
VKP DGCS V ++ + L Y + + P N ++ G+ P
Sbjct: 204 ---VKPVDDGCSVAVFKIQNKDMLIAYAENIFRADSNQPTN-LTQVLGL----KPNAAFP 255
Query: 573 IFEPFVETDEILFSSQSTNKNADRLMWKGN-SRWVEITVGVIG----KCGSMHSLMPSVT 627
++ F+ D L+ KG + ++EIT G++ + + +
Sbjct: 256 NYQQFLVED---------------LIEKGTATHFLEITGGLLTHLDEQGNRQYEMFEPSE 300
Query: 628 VKESGDILSLEEKFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRI 684
V +GDILSLEEKF G G N+TP P + K K+ ++ +A + +EG++RI
Sbjct: 301 VVATGDILSLEEKFLAGEGQNITPARFHPDPTTNLAISTKVKEDLQKVAQLVNIEGYARI 360
Query: 685 DAFVNV--DNGEVLIIEVNTVPGMTPSTVLIHQ-ALSEQPPMYPHQFFRKVLDLGSER 739
DA V + + E IIE+NT+P +TP+T + HQ A++ P F ++ G ++
Sbjct: 361 DAMVKIYPTHIETWIIEINTLPALTPATCIFHQCAINGYTPF---DFIHTIIQYGYKK 415
>gi|224029553|gb|ACN33852.1| unknown [Zea mays]
Length = 89
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 71/82 (86%)
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
S +AL +CK+ IE +ANAL LEGFSRIDAFVNV +GEVL+IEVNTVPGMTPSTVLIHQAL
Sbjct: 6 SEDALQRCKKSIETMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQAL 65
Query: 718 SEQPPMYPHQFFRKVLDLGSER 739
+E+PP+YP +FFR +LDL R
Sbjct: 66 AEEPPVYPRRFFRTLLDLVFAR 87
>gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
Length = 355
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 126/448 (28%), Positives = 190/448 (42%), Gaps = 145/448 (32%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVW--LNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 339
V +I G +SE++VSL SG N++ ++ + ++ I + D D+
Sbjct: 11 VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPI------------------FMDSDA 52
Query: 340 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 399
+ +W +P L++R+ T +V DL E + +
Sbjct: 53 A---LWEIPLKLLMRNCTRDV-----------------------EEDLAEEAVRVPY--- 83
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
+EL R + VF+A+HG GEDG +Q LLE +PYTG GV+AS
Sbjct: 84 ----EELKTRVDL-------------VFLALHGKYGEDGCMQGLLELLKIPYTGSGVLAS 126
Query: 460 KTCMDKVATSLALNHLADLGVLTINK-DVRRKEDLLKTPIVDIW-----HELTSKLQCKT 513
MDK+A+ VL IN DV R + + W + L +++ +
Sbjct: 127 ALGMDKLASRR---------VLEINGIDVPRTVPVFR----GAWKPEEENALFERIEQEI 173
Query: 514 ---LCVKPARDGCSTGVARLCCAEDLTVYVKA--LEECLLRIPPNSFSRAHGMIEMPNPP 568
VKP+R+GCSTGV ++ L+ + L +C
Sbjct: 174 GFPCVVKPSREGCSTGVKKVMSRAGLSDALNGAFLWDC---------------------- 211
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 628
+ E F++ E +T G++G +L PS T+
Sbjct: 212 --TALVEEFIDGME-------------------------VTCGILGG-NPPTALTPSETI 243
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
S D+LSLE+KF G G N TP + + E L K ++ AL L+G++RID FV
Sbjct: 244 ATS-DVLSLEDKFLYGQGENKTP---ARLPGETLMKIQEVAVKAFEALDLKGYARIDMFV 299
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
G VL++E NT PGMTPSTVL HQA
Sbjct: 300 T-SAGRVLVLEPNTQPGMTPSTVLFHQA 326
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 84/208 (40%), Gaps = 42/208 (20%)
Query: 41 VVKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 97
VVKP+R G S GV G+ D+L G L D +VE F++G E T +L
Sbjct: 178 VVKPSREGCSTGVKKVMSRAGLSDALN---GAFL--WDCTALVEEFIDG-MEVTCGILGG 231
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
P L P+E + DV + F Y Q TP R P +
Sbjct: 232 NP-----PTALTPSET----IATSDVLSLEDKFLY-------GQGENKTPARLPGETLMK 275
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I+E A F+ L L +ARID + T G +L + N GM
Sbjct: 276 IQEVAVKAFEALDLKGYARIDMFV-----------------TSAGRVLVLEPNTQPGMTP 318
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACS 245
++ LF QA+ G + + ++ I+ A S
Sbjct: 319 STVLFHQAAASGITQTGLVDRILEAALS 346
>gi|307107020|gb|EFN55264.1| hypothetical protein CHLNCDRAFT_57914 [Chlorella variabilis]
Length = 1817
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 136/585 (23%), Positives = 240/585 (41%), Gaps = 136/585 (23%)
Query: 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMD-------- 331
+ V+V+ GGD + R SL +G + +L+L+ ++ V +L S +S M+
Sbjct: 1183 QRVWVLLGGDGARRTQSLQAGLHAYLSLRNDPELLVEAFMLEPSAAGTSEMERRRVLLDR 1242
Query: 332 -----------------------ANITDPDSS-----SRVVWSLPYSLVLRHTTEEVLAA 363
+ I P + + VW L S ++R E++
Sbjct: 1243 RLELQQLGLEDEEILQEYEHLDLSRIRHPSPARFALENHGVWRLSDSGLVRGEVEDLQVG 1302
Query: 364 CIEAIEP-------------DRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADEL-PMR 409
C EA+ D A + Q + L L +W G AD+L P +
Sbjct: 1303 CEEALATANSSLATLEDRGGDIAGAQLSVARQELALLGVSLDGSAW--GGASADKLDPAQ 1360
Query: 410 HS-INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
+ + ++ A+E A V +A+ G G LQ LLE GVPYTG G +A++TC DK
Sbjct: 1361 YMWLRDFAAQAQEVGAVVLLALAGQPAAHGPLQRLLEEAGVPYTGSGHLAAETCADK--- 1417
Query: 469 SLALNHLADLGVLTINKDVRRKEDL--LKTPIVD------IWHELTSKLQCK--TLCVKP 518
++ + L DL I+ ++K L L VD ++ +L S L +LC+KP
Sbjct: 1418 AMLIEQLIDLSTSGISTAPQQKISLPELSAQCVDEATADRLFEQLRSSLGAGPVSLCIKP 1477
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
A GV R DL Y +A+E + +P + ++ PP + ++ EP++
Sbjct: 1478 AHACNGLGVMRATGGRDLMAYAQAVEAWVDVMPGEVLGGSPDVVMPVPPPSQFVV-EPWI 1536
Query: 579 ETD--EILFSSQS---------------TNKNADRLMWKGNS--RWVEITVGVIGKCGSM 619
T+ +L S+ + A L W S W+ ++ ++G+ G M
Sbjct: 1537 VTEPVRVLRSADGGIVPPEGQAYPDAAPEDGLAQALHWPAASSNEWLAVSAVLLGEAGRM 1596
Query: 620 HSLMPSVTVKE----------SGDILSLEEK-----------------------FQGGTG 646
L PSV V + + D+L ++ + GTG
Sbjct: 1597 RCLGPSVRVLQLREAVAGPGSAADVLQRVQQLALVEEAAEAEDEDEADALMAAAAELGTG 1656
Query: 647 INLTPPPASIMSTEALD---------------KCKQRIELIANALQLEGFSRIDAFVNVD 691
+ P + T A D + R+E++A+ L L G + + ++ V+
Sbjct: 1657 HDEAEP--LRLLTGAFDLTPPPPTLALPTAVASARLRLEMVADRLGLSGAAEVAGYMQVE 1714
Query: 692 NGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 736
GEV++ +V+T P ++P ++ QA + P+ P + ++++ +G
Sbjct: 1715 TGEVVVSDVSTTPDLSPGALIFRQAAAADAPLSPAEVLQELIRVG 1759
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 48 GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVV 107
GS +G +A G D+L + ++ E VVVE G FT VL G V
Sbjct: 611 GSVLGGCLATGARDALVASLVLMQEHGVSEVVVEAVQPGAHHFTCSVLATDQGA----VA 666
Query: 108 LLPTEV------------ELQFQGSVDVREK------DAIFNYRRK-------YL----- 137
L PTE+ EL+ + + RE +A+ R+ YL
Sbjct: 667 LPPTELSYWDVEDDIAECELRMERWLAAREGLDPEGVEALLELLRQEQRSHPGYLGGVGS 726
Query: 138 PTQQVAYHTPPR-FPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 183
P+QQ+ TPP ++R+ ++ LFQ LGL D+A+ GW LP
Sbjct: 727 PSQQLRQSTPPAALSAEATQAVRQASAKLFQGLGLRDYAQFSGWVLP 773
>gi|406917222|gb|EKD56061.1| hypothetical protein ACD_58C00306G0010 [uncultured bacterium]
Length = 360
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 139/314 (44%), Gaps = 62/314 (19%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FI HG EDG LQ LLE + +PY GPG++ S +K+ + L L T++
Sbjct: 98 FIVGHGKYMEDGCLQGLLELQKIPYNGPGILGSALGANKLISRLMLKSNGIDVPKTLSLG 157
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
++ KT I EL +K + VKP+R+GCST + ++ +L
Sbjct: 158 FNDWQNDQKTII-----ELINKEFSYPIVVKPSREGCSTAITKVKSESELD--------- 203
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
N+F A +I++ E F+ E+
Sbjct: 204 ------NAFKSAFKW-------DKIILVEEFLSGKEL----------------------- 227
Query: 607 EITVGVIGKCGSMHSLMPSVTVKESG--DILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
TV V+G +P SG D L+LE+KF G +TP + +S + K
Sbjct: 228 --TVSVLG--NRDQQALPVTETPRSGAKDYLTLEDKFLPGGAEMITP---AKISNDDTKK 280
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
+ + L L G+ RID F+ DN ++++E NT+PG+TPST++ HQA + +
Sbjct: 281 AQGTAVKVCKTLDLIGYPRIDMFLTDDN-RLVVLEANTLPGITPSTMIFHQA--AEIDLS 337
Query: 725 PHQFFRKVLDLGSE 738
P + ++++LG E
Sbjct: 338 PTDYISRIIELGLE 351
>gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
Length = 352
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 167/439 (38%), Gaps = 118/439 (26%)
Query: 278 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDP 337
G +V +I GG +SER+VSL SG NV+ NL A E P + D G+
Sbjct: 3 GRLKVGIILGGMSSEREVSLNSGRNVYDNLDA-EFYEGVPVFM----DAQGGL------- 50
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
W LP+ L+ ++TT ++ T L+ + E LKK F
Sbjct: 51 -------WILPWHLISQNTTRDI---------------TERLKGEARRIAYEDLKKEIDF 88
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
FI++HG G+DG +Q LLE +PYTGPGVM
Sbjct: 89 A----------------------------FISLHGKYGDDGCIQGLLELLRIPYTGPGVM 120
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517
AS MDK L L GV + R+E+ + I + + K
Sbjct: 121 ASALGMDK---HLQQKILRAAGVAVPESLLVREEEWRQDS--QIVKDRVKEFPGYPCFTK 175
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577
P R+G S GV + DL + +E+ L + RA ++ E +
Sbjct: 176 PIREGSSVGVTVVRDEADLE---RGMEDAL------KWDRA-------------VLVEEY 213
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
+E E + V+ + G H L + + +
Sbjct: 214 LEGR-------------------------EFSCIVLEEEGQFHPL-ELTEIHPQSEFFTY 247
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
++K+ G TPP + + ++ K + AL + RID F+ +++G +LI
Sbjct: 248 DDKYMPGRCRKFTPP--KTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFI-LNDGRILI 304
Query: 698 IEVNTVPGMTPSTVLIHQA 716
+ N+ GM PS+ QA
Sbjct: 305 TDPNSSSGMAPSSFFFEQA 323
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 93/208 (44%), Gaps = 48/208 (23%)
Query: 43 KPTRAGSSIGVTVAY-------GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 95
KP R GSS+GVTV G+ D+LK D V+VE +LEG EF+ IVL
Sbjct: 175 KPIREGSSVGVTVVRDEADLERGMEDALK---------WDRAVLVEEYLEG-REFSCIVL 224
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
+ F HP+ L TE+ Q + F Y KY+P + + P P V
Sbjct: 225 EEEGQF--HPLEL--TEIHPQSE----------FFTYDDKYMPGRCRKFTPPKTIPPDVT 270
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
I+ F+ LG + RIDG+ L G IL TD N SGM
Sbjct: 271 EQIKAEVIRAFKALGFRSYGRIDGFILND-----------------GRILITDPNSSSGM 313
Query: 216 EQTSFLFQQASKVGFSHSNILRTIIGHA 243
+SF F+QA+ G S I+ T+I +A
Sbjct: 314 APSSFFFEQAACAGMLPSMIITTLIENA 341
>gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245]
gi|229463739|sp|B3EDF4.1|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245]
Length = 363
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 117/282 (41%), Gaps = 57/282 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDG +Q LL+ G+PYTG GV AS MDK T L AD GV T
Sbjct: 103 VFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLC---AADAGVATAPS 159
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ L P + HEL L VKPA G S G+++
Sbjct: 160 ITLDADSYLADP--EPVHELVDSTFGYPLFVKPASLGSSVGISK---------------- 201
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +P PE L + +IL + + K
Sbjct: 202 ----------------VHLPAALPEALKVACSYDR-KILVEAAVSGK------------- 231
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EI V V+G + S+ P V+ D ++K+ T P + + + LD
Sbjct: 232 -EIEVAVLGNDRPVASV-PG-EVEPGSDFYDFQDKYIHNTAKTFIP---ARLPDKLLDSV 285
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + AL G SR+D FVN +NG +++ E+NT+PG T
Sbjct: 286 RCSAITVYKALGCRGMSRVDFFVNEENGSIVLNEINTIPGFT 327
>gi|302853819|ref|XP_002958422.1| hypothetical protein VOLCADRAFT_108127 [Volvox carteri f.
nagariensis]
gi|300256227|gb|EFJ40498.1| hypothetical protein VOLCADRAFT_108127 [Volvox carteri f.
nagariensis]
Length = 2829
Score = 90.9 bits (224), Expect = 3e-15, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
A+ A V +A G + E G LQ LLE GVP GPG D+ + L L
Sbjct: 2292 ARREGAVVLVAGRGEMAECGHLQVLLELNGVPCVGPGSQQMSWLWDRTEAAEMLQDLHAQ 2351
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWH--ELTSKLQCK---------TLCVKPARDGCSTGV 527
GV T + + ED +D H EL +L+ + +L V+PA D TGV
Sbjct: 2352 GVDTPPRFLLPYEDAATAAELDEQHAEELMDRLRSEVVEDPPEGVSLLVRPASDVAGTGV 2411
Query: 528 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF-- 585
ARL C D+ Y+ AL + IP ++ S HG I +P PP +L FE FVETD +
Sbjct: 2412 ARLRCGADIVTYMTALRDGDASIPADTLSYPHGEIRLPPRPPPVLSFELFVETDPLFMVL 2471
Query: 586 ------------SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 626
+ + A L + WVE++ ++G G+M L P++
Sbjct: 2472 AAPEAATAAAGAAGAAGGAVAAGLHSRREKGWVEVSFTLMGPLGAMSCLPPAM 2524
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 649 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
L PPP ++ ALD +R LIA+ L L+GF +I+AFV D+GE+ + ++N P + P
Sbjct: 2628 LAPPPEEALTAAALDAACKRAALIADRLGLQGFVQIEAFVASDSGELAVYDINGSPDLGP 2687
Query: 709 STVLIHQALSEQPPMYPHQFFRKVLDLG 736
+ + QA + + P F R++L L
Sbjct: 2688 DSPIWRQAAAAG--LLPQDFLRELLGLA 2713
Score = 46.6 bits (109), Expect = 0.049, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 128 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 187
A+F+ R V HTPPRF + +++R A+ LF LGL D A ++GW + +
Sbjct: 1161 AVFDPRVTMPAISSVRLHTPPRFSRKLTHAVRHAAARLFGELGLRDVATVEGWVDLPARY 1220
Query: 188 VFSSSETKYGSTE 200
+ ET G E
Sbjct: 1221 ADTVEETMGGKGE 1233
>gi|383934186|ref|ZP_09987628.1| D-alanine-D-alanine ligase [Rheinheimera nanhaiensis E407-8]
gi|383704642|dbj|GAB57719.1| D-alanine-D-alanine ligase [Rheinheimera nanhaiensis E407-8]
Length = 309
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 130/316 (41%), Gaps = 90/316 (28%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P + S+ E LA+ VFI +HG GEDG++Q L+ G+PYTG GV+ S MDK+
Sbjct: 48 PKQQSLAE---LAQSGAQRVFIVLHGRGGEDGSMQGALQQLGLPYTGSGVLGSALAMDKI 104
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHE------LTSKLQCKTLCVKPAR 520
K + + + L P + H+ L + L K + VKPA
Sbjct: 105 RC----------------KYLFQAQQLPTAPFAVVHHDDTDFAALLASLGGKVM-VKPAN 147
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
+G S G++ AE+L VK + N EIL+
Sbjct: 148 EGSSIGMSAASTAEELQQAVK---------------------QALNYDSEILV------- 179
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
RW+ E TV ++ ++P V ++
Sbjct: 180 ----------------------ERWINGREFTVAILNG-----QVLPIVEMRTPRAFYDY 212
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVL 696
E K+Q + L P P S T A+ QR L A NA+ G+ R+D ++ D G+
Sbjct: 213 EAKYQASSTEYLCPAPLSAEQTAAM----QRSALKAFNAVGASGWGRVDIMLDQD-GQHF 267
Query: 697 IIEVNTVPGMTPSTVL 712
++EVNTVPGMT +++
Sbjct: 268 LLEVNTVPGMTEKSLV 283
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 39/206 (18%)
Query: 38 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 97
GKV+VKP GSSIG++ A + L++A L D ++VE ++ G EFT +L+
Sbjct: 139 GKVMVKPANEGSSIGMSAA-STAEELQQAVKQALN-YDSEILVERWIN-GREFTVAILN- 194
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
+LP V++R A ++Y KY + Y P +
Sbjct: 195 --------GQVLPI---------VEMRTPRAFYDYEAKYQAS-STEYLCPAPLSAEQTAA 236
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
++ A F +G + R+D H ++N + GM +
Sbjct: 237 MQRSALKAFNAVGASGWGRVDIMLDQDGQH-----------------FLLEVNTVPGMTE 279
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHA 243
S + A G+S ++ I+G +
Sbjct: 280 KSLVPMAAKAAGYSFQQLVVAILGQS 305
>gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans]
gi|190359141|sp|A4G8T6.1|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
(D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans]
Length = 334
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 127/308 (41%), Gaps = 66/308 (21%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P S+ E LA E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS MDKV
Sbjct: 52 PAERSLAE---LAAEKFDRVFIALHGSYGEDGTLQGALEQLGIPYTGPGVMASAISMDKV 108
Query: 467 ATS-LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 525
T + L+H GV T V E + + E L +K +G +
Sbjct: 109 MTKRVCLSH----GVPTPRFTVLDAETTSAAQLQSVAAEFGLPLM-----LKAPHEGSTI 159
Query: 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585
G+A++ AE + ++ +++ E FV
Sbjct: 160 GIAKVETAEGM----------------------QAGFDLCAKYEAVVLVEQFV------- 190
Query: 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
KG E+TV VIG G +P V ++ E K+
Sbjct: 191 --------------KGR----ELTVPVIGS-GRNARALPIVEIRAPQGNYDYEHKYFSND 231
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704
L P P EA K Q + + A NA+ G+SR+D V + E ++E+NT P
Sbjct: 232 TEYLCPAPFD----EAFTKRVQALAVSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSP 287
Query: 705 GMTPSTVL 712
GMT +++
Sbjct: 288 GMTSHSLV 295
>gi|255531745|ref|YP_003092117.1| D-alanyl-alanine synthetase A [Pedobacter heparinus DSM 2366]
gi|255344729|gb|ACU04055.1| D-alanine/D-alanine ligase [Pedobacter heparinus DSM 2366]
Length = 328
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 143/346 (41%), Gaps = 67/346 (19%)
Query: 391 LKKHSWFTGFDIADELPMRHSINEW---IKLAKENQATVFIAVHGGIGEDGTLQSLLEAE 447
L + WF ++ AD + + N++ +K K VFIA+HG GEDG LQ +
Sbjct: 42 LTQQGWF--YEPADSVKIEVDRNDFSINLKGKKVKFEGVFIAIHGSPGEDGKLQGYFDML 99
Query: 448 GVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTS 507
G+PYT + S M+K T ++ +A+L + + + TP ++
Sbjct: 100 GIPYTTCDALTSAVTMNKGYTKAIVDGIAELNI------AKSAQIFKGTPYS--LEQIKK 151
Query: 508 KLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNP 567
L+ VKP G S G++++ +DL + RA
Sbjct: 152 TLKVPYF-VKPNNGGSSIGMSKVNHPDDLQA---------------AIDRA--------- 186
Query: 568 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVT 627
F E +IL + + E T+GV+ G + +++P+
Sbjct: 187 ---------FKEDSQILIEEFISGR--------------EFTIGVVKLDGEI-TVLPATE 222
Query: 628 VKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAF 687
V+ + + E K+ G TP P + E L++ Q ++ + L G RID
Sbjct: 223 VETAKEFFDFEAKYTPGVATETTPAP---IRKETLERVTQIVKNVYLKLNCRGVVRIDFI 279
Query: 688 VNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 733
+N D G+ IE+NT+PG T ++ + Q + M + F+ K++
Sbjct: 280 LNGDEGDFYFIEINTIPGQTATSFIPQQVAA--AGMKLNDFYTKLI 323
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 85/206 (41%), Gaps = 42/206 (20%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSSIG++ D L+ A + D ++++E F+ G EFT V+ +
Sbjct: 159 VKPNNGGSSIGMS-KVNHPDDLQAAIDRAFKE-DSQILIEEFISG-REFTIGVVKL---- 211
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV--VINSIR 159
D VL TEVE + F++ KY P VA T P PI + +
Sbjct: 212 DGEITVLPATEVETAKE----------FFDFEAKYTPG--VATETTPA-PIRKETLERVT 258
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ ++ +L RID + + E G F +IN I G TS
Sbjct: 259 QIVKNVYLKLNCRGVVRID--------FILNGDE--------GDFYFIEINTIPGQTATS 302
Query: 220 FLFQQASKVGFS----HSNILRTIIG 241
F+ QQ + G ++ ++R IG
Sbjct: 303 FIPQQVAAAGMKLNDFYTKLIRETIG 328
>gi|435854475|ref|YP_007315794.1| D-alanine--D-alanine ligase [Halobacteroides halobius DSM 5150]
gi|433670886|gb|AGB41701.1| D-alanine--D-alanine ligase [Halobacteroides halobius DSM 5150]
Length = 314
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 152/335 (45%), Gaps = 74/335 (22%)
Query: 387 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 446
++ LKK GF D P + + L+ E FIA+HG GEDGT+Q LLE
Sbjct: 28 ILAALKKQ----GFQTIDLDPANDDL--YQALSAEKIDVAFIALHGRFGEDGTIQGLLEL 81
Query: 447 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN---KDVRRKEDLLKTPIVDIWH 503
+G+PYTG GV+AS MDKV + + I+ KD + +++ LK+ DI
Sbjct: 82 KGIPYTGSGVLASSLAMDKVTSKRLFKQIEVTTPQFISVSKKDFKEEDEQLKS---DIRK 138
Query: 504 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 563
EL KL + +KPA +G S G L E+ EE L+ N+F
Sbjct: 139 EL--KL---PVVIKPALEGSSIG---LSIVEE--------EEKLIDSIENAFKYDR---- 178
Query: 564 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 623
E+LI E ++ EITVG++G M ++
Sbjct: 179 ------EVLI-EEYIP-------------------------GREITVGLLGDEDPM--VL 204
Query: 624 PSVTVKESGDILSLEEKF-QGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGF 681
P + + + E K+ +G T ++ PA++ E + Q++ L A+ L+ G
Sbjct: 205 PIIEIMPQEGVYDFEAKYTKGMTKFDV---PANL--NEQVYNQAQQLALQAHQVLKCSGV 259
Query: 682 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
SR+D V G+ ++EVNT+PGMT +++L A
Sbjct: 260 SRVDLRVT-PQGKPYVLEVNTIPGMTETSLLPQAA 293
>gi|410941325|ref|ZP_11373124.1| D-ala D-ala ligase N-terminal domain protein [Leptospira noguchii
str. 2006001870]
gi|410783884|gb|EKR72876.1| D-ala D-ala ligase N-terminal domain protein [Leptospira noguchii
str. 2006001870]
Length = 351
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 148/344 (43%), Gaps = 69/344 (20%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ + + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNPILSLDADIVFLGLHGGQGEDGTIQGFLETLGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQTGQKVAPFFEIDKLEYLNSIDAAITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S ++ E L E
Sbjct: 182 GSSVSTHKITNVEQLK-----------------------------------------EQL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
ILF S+S +LM + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 SILFKSES------KLMSQSFLAGIEVSCGVLERYREGKFKRIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVNVDNGEVLI 697
K++ G +T PA I E K Q++ ++A+ +L G+SR D F+ V NGE I
Sbjct: 255 SKYKQGGSHEIT--PARISEQEM--KLVQKLAVVAHESLGCRGYSRTD-FIIV-NGEPHI 308
Query: 698 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
+E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 309 LETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|406897787|gb|EKD41624.1| hypothetical protein ACD_73C00614G0001 [uncultured bacterium]
Length = 297
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 122/286 (42%), Gaps = 66/286 (23%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F+A+HG GEDGT+Q LLE +PYTG V AS C DKVAT + L+H G++T
Sbjct: 52 FLALHGRYGEDGTIQGLLEWFKIPYTGSSVKASAICFDKVATKVFLSH---AGMVTPAYR 108
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
V + + LK+ + + + VKP +G + G++R+ +L AL E
Sbjct: 109 VFNQGEDLKSFVANFDLHF-------PVIVKPNSEGSTIGISRVFEKGELE---GALNEA 158
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
L + D+++ Q
Sbjct: 159 L-------------------------------QYDKVILVEQYIQGR------------- 174
Query: 607 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 666
E+TVGV+ +P + V+ G K+ G L P P + T+ L +
Sbjct: 175 EVTVGVL-----EGQALPVIEVRPKGGFYDFASKYTKGATEYLVPAPLDVALTQKLQRLG 229
Query: 667 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ +L+ +G R D +N +N E +EVNT+PGMT +++L
Sbjct: 230 EK---AFQSLECQGAVRADFMINSNN-EPYFLEVNTIPGMTETSLL 271
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 43/207 (20%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V+VKP GS+IG++ + + +G + E + D ++VE +++G E T VL+
Sbjct: 129 VIVKPNSEGSTIGISRVF----EKGELEGALNEALQYDKVILVEQYIQG-REVTVGVLEG 183
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
+ LP ++VR K +++ KY Y P + +
Sbjct: 184 QA---------LPV---------IEVRPKGGFYDFASKY-TKGATEYLVPAPLDVALTQK 224
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+ QRLG F ++ + + +S+ Y F ++N I GM +
Sbjct: 225 L--------QRLGEKAFQSLECQGAVRADFMINSNNEPY---------FLEVNTIPGMTE 267
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHAC 244
TS L + A +G S ++ TI+ A
Sbjct: 268 TSLLPKAAQALGISFEDLCETILKGAA 294
>gi|409913513|ref|YP_006891978.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400]
gi|298507094|gb|ADI85817.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400]
Length = 316
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 142/321 (44%), Gaps = 80/321 (24%)
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ +LP + + EWI +A FI +HG GEDGT+Q LLE G+PYTG GV+AS
Sbjct: 47 DVGRDLP-QVLVREWIDVA-------FICLHGRYGEDGTVQGLLELMGIPYTGSGVLASA 98
Query: 461 TCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
M+K+ +A A G LT+ + VRR E + P+ + + + VKP
Sbjct: 99 LAMNKI---VAKEVFAARG-LTVAPYRVVRRGEAV--DPVAEGFG--------YPVVVKP 144
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
+++G S GV+ + E+L P + A F
Sbjct: 145 SQEGSSVGVSIVKSPEEL---------------PYALETA------------------FR 171
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
D+IL +R + KG EI +G++ M ++ + + E
Sbjct: 172 YDDDIL---------VERFI-KGR----EIQIGILD-----DRAMGAIEIVPVNEFYDFE 212
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ G ++ PP ++ E + E AL G+SR+D F+ + GE ++
Sbjct: 213 AKYTAGKAEHICPP---VLPAELYRRLLAEGETAHRALGCSGYSRVD-FLVTEGGECYLL 268
Query: 699 EVNTVPGMTPSTVLIHQALSE 719
EVNT+PGMT ++L AL E
Sbjct: 269 EVNTLPGMTALSLLPEIALKE 289
>gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
gi|81701145|sp|Q748D8.1|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
Length = 316
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 80/321 (24%)
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ +LP + + EWI +A FI +HG GEDGT+Q LLE G+PYTG GV+AS
Sbjct: 47 DVGRDLP-QVLVREWIDVA-------FICLHGRYGEDGTVQGLLELMGIPYTGSGVLASA 98
Query: 461 TCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
M+K+ +A A G LTI + VRR E + P+ + + + VKP
Sbjct: 99 LAMNKI---VAKEVFAARG-LTIAPYRVVRRGETV--DPVAEGFG--------YPVVVKP 144
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
+++G S GV+ + E+L P++ A F
Sbjct: 145 SQEGSSVGVSIVKSPEEL---------------PSALELA------------------FR 171
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
D+IL +R + KG EI +G++ M ++ + + E
Sbjct: 172 YDDDILV---------ERFI-KGR----EIQIGILD-----DRAMGAIEIVPVNEFYDFE 212
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ G ++ PP ++ E + E AL G+SR+D F+ + GE ++
Sbjct: 213 AKYTAGKAEHICPP---VLPAELHRRLLAEGEAAHRALGCSGYSRVD-FLVTEGGECYLL 268
Query: 699 EVNTVPGMTPSTVLIHQALSE 719
EVNT+PGMT ++L AL E
Sbjct: 269 EVNTLPGMTALSLLPEIALKE 289
>gi|255283497|ref|ZP_05348052.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469]
gi|255265954|gb|EET59159.1| D-ala D-ala ligase N-terminal domain protein [Marvinbryantia
formatexigens DSM 14469]
Length = 341
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 141/348 (40%), Gaps = 87/348 (25%)
Query: 389 EGLKKHSWFTG-FDIADELPMRHSINEWIKLAKENQA---------------TVFIAVHG 432
EGL+ + F +D+ E S N+ I+ K + TVF+A+HG
Sbjct: 45 EGLQAETAFAEEYDVEREAAYIRSFNDSIEKIKAERREFFGPGVLETCRAADTVFLALHG 104
Query: 433 GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 492
GEDG +Q+ + G+ YTG G + S MDK T + GV + RK D
Sbjct: 105 TCGEDGRIQAAFDLLGITYTGSGYLGSALAMDKTITK---QLFRENGVPAPAGVIVRKTD 161
Query: 493 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPP 552
K+ EL +L C VK A G S GV Y+ EE
Sbjct: 162 SPKSA-----AELGMELPC---VVKTACGGSSVGV-----------YIVHTEEEFSEAVK 202
Query: 553 NSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGV 612
N FS +E D+L+ + R E TVGV
Sbjct: 203 NGFS-----------------YE-------------------DKLIVEQYIRGQEYTVGV 226
Query: 613 I-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 671
I GK P V + + K+Q G+ I P P S T+ + Q I L
Sbjct: 227 IDGKA------YPIVEISPIAGFYDYKNKYQAGSTIETCPAPLSAELTQKM----QEIAL 276
Query: 672 IA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
A + L+LE ++R+D ++ D G + +E NT+PGMTP+++L +A +
Sbjct: 277 KAYDTLRLESYARMDFMMDEDGG-IYCLEANTLPGMTPTSLLPQEAAA 323
>gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
Z-2901]
gi|123576231|sp|Q3ACF5.1|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 312
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 67/342 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G+++ ++ M +I E +K KEN FIA+HG GEDG +Q LLE +PYTG G++A
Sbjct: 32 GYNVV-KIDMDRNIAETLK--KENIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGILA 88
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVK 517
S +DK+ T L G+ T N ++ P + I E+ L+ + +K
Sbjct: 89 SSLAIDKIMTKKILKA---EGIPTPNYIAFSFDE---NPNFEAISSEILQTLKL-PVVIK 141
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577
R+G + G+ + ++L +K + E + L+ E F
Sbjct: 142 APREGSTIGIEFVFSKQELPKAIKKVLEI----------------------DKQLLVEEF 179
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
+E VE+T V+G + ++P + +
Sbjct: 180 IE-------------------------GVEVTASVLGNSNPV--VLPLIEIVSKTRFYDY 212
Query: 638 EEKFQGGTGINLTPPP-ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ G ++ PP A +S +A++ ++ + AL GF+R+D ++V E
Sbjct: 213 EAKYTPGLSEHIIPPRIAPELSQKAIEYARKTYK----ALGCRGFARVDFMIDVRKNEAY 268
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738
++EVNT+PGMT +T L A Q + K+L LG E
Sbjct: 269 VLEVNTIPGMT-ATSLFPDAAKAQGISF-EDLVEKILMLGLE 308
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 35/201 (17%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VV+K R GS+IG+ + L KA +LE ID +++VE F+E G E TA VL
Sbjct: 138 VVIKAPREGSTIGIEFVFSK-QELPKAIKKVLE-IDKQLLVEEFIE-GVEVTASVLG--- 191
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
+ +PVV LP +++ K ++Y KY P + PPR +
Sbjct: 192 --NSNPVV-LPL---------IEIVSKTRFYDYEAKYTPGLS-EHIIPPRIAPELSQKAI 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
E A ++ LG FAR+D + ++N I GM TS
Sbjct: 239 EYARKTYKALGCRGFARVDFMIDVRKNEAY----------------VLEVNTIPGMTATS 282
Query: 220 FLFQQASKVGFSHSNILRTII 240
A G S +++ I+
Sbjct: 283 LFPDAAKAQGISFEDLVEKIL 303
>gi|421873916|ref|ZP_16305525.1| D-alanine--D-alanine ligase [Brevibacillus laterosporus GI-9]
gi|372457027|emb|CCF15074.1| D-alanine--D-alanine ligase [Brevibacillus laterosporus GI-9]
Length = 382
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 137/323 (42%), Gaps = 73/323 (22%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALNHLADLG 479
+F +HG GEDGT+Q LLE G+PY G GVMAS MDK V L+ + +G
Sbjct: 112 VIFPVIHGPNGEDGTVQGLLELAGIPYVGTGVMASAVGMDKLMMKNVFAQAGLDQVQYMG 171
Query: 480 VL--TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L I +DV + +++ KL VKPA G S G+ + +DL
Sbjct: 172 FLRSQIERDVD-----------SVMNQIEQKLGYPCF-VKPANMGSSVGITKAKDRDDL- 218
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
G +E+ +I E F++ E+ +
Sbjct: 219 ---------------------RGALELACKFDRRIIVEEFIKAREV------------EI 245
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
GN E+ VIG+ + KE D E K++GG G +L P + +
Sbjct: 246 GVLGNE---ELRTSVIGEV---------IAAKEFYD---YEAKYKGG-GTDLKIP--ADL 287
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
+ D+ + + AL G SR+D F + +N V+I EVNT+PG TP + ++ L
Sbjct: 288 PQQVADRIAEMAKTAFQALDGSGLSRVDFFYDEENDRVVINEVNTMPGFTPFS--MYPML 345
Query: 718 SEQPPMYPHQFFRKVLDLGSERF 740
+ + + +++ LG ER+
Sbjct: 346 FAEAGIPYAELIDQLVQLGLERY 368
>gi|15896148|ref|NP_349497.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum ATCC 824]
gi|337738103|ref|YP_004637550.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum DSM 1731]
gi|384459614|ref|YP_005672034.1| D-alanine--D-alanine ligase [Clostridium acetobutylicum EA 2018]
gi|25452916|sp|Q97F58.1|DDL_CLOAB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|15025943|gb|AAK80837.1|AE007787_3 D-alanine-D-alanine ligase [Clostridium acetobutylicum ATCC 824]
gi|325510303|gb|ADZ21939.1| D-alanine-D-alanine ligase [Clostridium acetobutylicum EA 2018]
gi|336292950|gb|AEI34084.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum DSM 1731]
Length = 343
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 135/332 (40%), Gaps = 81/332 (24%)
Query: 392 KKHSWFTGFDIADELPMRHSINEWIK------------LAKENQATVFIAVHGGIGEDGT 439
KK WF AD++ EW K L + VF +HG GEDGT
Sbjct: 44 KKGEWFEYTGSADKIEN----GEWEKDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGT 99
Query: 440 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVLTINKDVRRKEDLLK 495
+Q L + GVP GP V++S CMDKV T L H AD V+ ++ KE+++K
Sbjct: 100 IQGLCKLVGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIK 159
Query: 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSF 555
E+ +KL + +KP+ G S G+
Sbjct: 160 --------EIENKLGY-AVFIKPSNSGSSVGI---------------------------- 182
Query: 556 SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK 615
++AH E+ E + ++ + +E L N+R EI V V+G
Sbjct: 183 TKAHNRKELEAGLEEAMKYDRKILVEEAL-----------------NAR--EIEVAVLGN 223
Query: 616 CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA 675
+ +P V + + E K++ L P + +S E L+K K + A
Sbjct: 224 -EEPKAAIPGEIVP-AKEFYDYEAKYENAASKLLIP---ANLSNENLEKIKNIAIEVYKA 278
Query: 676 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
L G SR+D V+ D E+ + EVNT+PG T
Sbjct: 279 LDCSGMSRVDFLVDKDTTEMYLNEVNTIPGFT 310
>gi|455669189|gb|EMF34351.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans serovar Pomona str. Fox 32256]
Length = 320
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 39 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 98
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 99 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 150
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 151 GSSVSVYKITNREQLK-----------------------------------------EKL 169
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 170 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 223
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 224 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 278
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 279 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 319
>gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
Length = 344
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 137/304 (45%), Gaps = 73/304 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F+A+HGG GEDGT+Q+LL+ GVPYTG G +AS MDK + + L GV T N
Sbjct: 96 LFLALHGGQGEDGTIQALLDMVGVPYTGSGHLASALAMDKHLSKVVLR---SAGVATANW 152
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ D +T D ++ L + VKP++ G + G++ + E+L V+
Sbjct: 153 IMAPAPDSAETLDAD---DVGRHLDWPVV-VKPSKQGSTVGLSIVRAPEELAAAVR---- 204
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
E F DE++ +
Sbjct: 205 -----------------------------EAFRYDDEVMIERFVPGR------------- 222
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG----INLTPPPASIMSTEA 661
E+TVG++G +++P++ ++ ++ E K+ G L+P AS ++
Sbjct: 223 -ELTVGILG-----DAVLPTIEIQPVKELYDYECKYTPGMAKEFVAELSPEEASKLA--- 273
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
D+ K+ + AL+L G++RID F G+ +E NT+PGMTP T LI QA +
Sbjct: 274 -DQAKRAFQ----ALKLRGYARID-FRLDPQGQPWCLEANTLPGMTP-TSLIPQAAAAAG 326
Query: 722 PMYP 725
++P
Sbjct: 327 VLFP 330
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 50/212 (23%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
VVVKP++ GS++G++ ++ + ++ + E DD V++E F+ G I+ D
Sbjct: 177 VVVKPSKQGSTVGLS----IVRAPEELAAAVREAFRYDDEVMIERFVPGRELTVGILGD- 231
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHTPPRFPIVV 154
+LPT +E+Q V+E +++Y KY P + VA +P
Sbjct: 232 ---------AVLPT-IEIQ-----PVKE---LYDYECKYTPGMAKEFVAELSPEE----- 268
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+ + + A FQ L L +ARID P G + N + G
Sbjct: 269 ASKLADQAKRAFQALKLRGYARIDFRLDPQ-----------------GQPWCLEANTLPG 311
Query: 215 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
M TS + Q A+ G ++ I+ A ++
Sbjct: 312 MTPTSLIPQAAAAAGVLFPDLCERIVQLALAK 343
>gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
gi|226696387|sp|B5EBQ4.1|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
Length = 305
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 89/327 (27%)
Query: 391 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVP 450
+K+ G D+ +LP R LA+E FIA+HG GEDG++Q LLE G+P
Sbjct: 37 VKQGFRAVGIDVGRDLPQR--------LAEEQVELAFIALHGRFGEDGSVQGLLELMGIP 88
Query: 451 YTGPGVMASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSK 508
YTG GV+AS +DK+A+ + A G+ L + +RR E+L L P+
Sbjct: 89 YTGSGVLASALAIDKIASKVI---FASAGLKLAPYQVLRRGEELKLANPL---------- 135
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
+ VKP+R+G S GV ++R P SR ++
Sbjct: 136 ----PVVVKPSREGSSVGVG------------------IVRDP----SRMQAALD----- 164
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVT 627
E F EIL +G E+ VG++ GK ++P
Sbjct: 165 ------EAFRYDSEILI--------------EGFIDGREVQVGILNGKALGAIEIIP--- 201
Query: 628 VKESGDILSLEEKFQGGTGINLTPP--PASIMSTEALDKCKQRIELIANALQLEGFSRID 685
G+ E K+ G ++ P P ++ + + ++ E AL + +SR+D
Sbjct: 202 ---KGEFYDYEAKYTDGGAQHILPARLPEAVYA-----EVLRQGEKAHAALGCDCYSRVD 253
Query: 686 AFVNVDNGEVLIIEVNTVPGMTPSTVL 712
F+ + G+ ++EVNT+PGMT ++L
Sbjct: 254 -FLVTETGDCFLLEVNTLPGMTDLSLL 279
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
VVVKP+R GSS+GV G++ + + + E D +++E F++ G E +L+
Sbjct: 137 VVVKPSREGSSVGV----GIVRDPSRMQAALDEAFRYDSEILIEGFID-GREVQVGILN- 190
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVIN 156
G G++++ K ++Y KY T A H P R P V
Sbjct: 191 GKAL-----------------GAIEIIPKGEFYDYEAKY--TDGGAQHILPARLPEAVYA 231
Query: 157 SIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+ LG CD ++R+D FL TE G ++N + GM
Sbjct: 232 EVLRQGEKAHAALG-CDCYSRVD--FL---------------VTETGDCFLLEVNTLPGM 273
Query: 216 EQTSFLFQQASKVGFSHSNILRTIIGHA 243
S L + A G + ++ I+ A
Sbjct: 274 TDLSLLPEIAGGAGIAFGELVLRILQAA 301
>gi|417769729|ref|ZP_12417644.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pomona str. Pomona]
gi|418683924|ref|ZP_13245117.1| D-ala D-ala ligase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418711131|ref|ZP_13271897.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|400324302|gb|EJO76598.1| D-ala D-ala ligase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409948434|gb|EKN98423.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pomona str. Pomona]
gi|410768731|gb|EKR43978.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
Length = 351
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|418733561|ref|ZP_13290685.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 12758]
gi|421118360|ref|ZP_15578700.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|410009993|gb|EKO68144.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Canicola str. Fiocruz LV133]
gi|410773170|gb|EKR53201.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 12758]
Length = 351
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
Length = 376
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 128/317 (40%), Gaps = 61/317 (19%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 483
VF +HG GEDGT+Q L E G+PY G GV+ + MDK + + L L
Sbjct: 107 VFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQGDYLVF 166
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
N+ ++ + L+ + + LT C VKPA G S GV + E +L
Sbjct: 167 NR--KQVNNRLEEAVAQVESTLT--YPC---FVKPANAGSSVGVNKASDRE-------SL 212
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E+ L+ N ++ E F++ EI GN
Sbjct: 213 EKALIIAAKNDRR---------------ILVEEFIDGREI------------ECAVLGND 245
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
V TVG + C + V +S ++ PA +STE ++
Sbjct: 246 EPVASTVGEVVPCNEFYDYEAKYQVGDSSKVV----------------IPAENLSTETVE 289
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
K ++ L G SR+D FV+ D G + I E+NT+PG T ++ ++ L +
Sbjct: 290 KIREYAVRAFKCLDCAGLSRVDFFVHKDTGAIYINEINTLPGFT--SISMYPKLWAASGI 347
Query: 724 YPHQFFRKVLDLGSERF 740
Q K+++L ERF
Sbjct: 348 PYSQLIDKLIELALERF 364
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP AGSS+GV A +SL+KA II D R++VE F++ G E VL G
Sbjct: 192 VKPANAGSSVGVNKASDR-ESLEKAL-IIAAKNDRRILVEEFID-GREIECAVL----GN 244
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
D PV EV + D K + + + +P + ++ T + IRE
Sbjct: 245 D-EPVASTVGEV-VPCNEFYDYEAKYQVGDSSKVVIPAENLSTET--------VEKIREY 294
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A F+ L +R+D +F+ T G I +IN + G S
Sbjct: 295 AVRAFKCLDCAGLSRVD-FFVHKDT---------------GAIYINEINTLPGFTSISMY 338
Query: 222 FQQASKVGFSHSNILRTIIGHACSRFPN 249
+ + G +S ++ +I A RF +
Sbjct: 339 PKLWAASGIPYSQLIDKLIELALERFED 366
>gi|405980700|ref|ZP_11039030.1| D-alanine-D-alanine ligase [Actinomyces neuii BVS029A5]
gi|404393343|gb|EJZ88398.1| D-alanine-D-alanine ligase [Actinomyces neuii BVS029A5]
Length = 370
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 137/324 (42%), Gaps = 66/324 (20%)
Query: 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL---ADL 478
N VF +HG GEDGT+Q +LE G+PY G GV+AS CMDK T L A
Sbjct: 102 NVDVVFPLLHGPYGEDGTIQGMLEMAGLPYVGCGVLASAACMDKPTTKTILTEQGIPAGR 161
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
L + R +D + + L + + VKPAR G S G+ ++ EDL
Sbjct: 162 WQLVTDYQWRSDQD-------GVLYRLGA--LGLPVYVKPARAGSSLGITKVTAVEDLPA 212
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
A+EE +R H +P R++
Sbjct: 213 ---AIEE----------ARRH------DP----------------------------RVI 225
Query: 599 WKGNSRWVEITVGVIGKCGSMH---SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
+ ++ +E+ V+G S++ + VK + K+ ++L P +
Sbjct: 226 VEALTKGIEVECAVLGAPAGEQPKASVLGQIEVKNEQKFYDYKTKYVDHDAVSLVIP--A 283
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+ E + K + +A+ EG +R+D F +++ G++ + E+NT+PG TP + ++
Sbjct: 284 PLPDELMKKAQDIAVAAFDAMGCEGLARVDCFADLETGQITVNEINTMPGFTPFS--MYP 341
Query: 716 ALSEQPPMYPHQFFRKVLDLGSER 739
L ++ M K+++L +R
Sbjct: 342 LLWQEAGMSYSDLITKLIELALQR 365
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 41/213 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
V VKP RAGSS+G+T V D ++++A+ D RV+VE L G E VL
Sbjct: 188 VYVKPARAGSSLGITKVTAVEDLPAAIEEARRH-----DPRVIVEA-LTKGIEVECAVLG 241
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+G VL G ++V+ + ++Y+ KY+ V+ P P ++
Sbjct: 242 APAGEQPKASVL----------GQIEVKNEQKFYDYKTKYVDHDAVSLVIPAPLPDELMK 291
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
++ A F +G AR+D F+ ET G I +IN + G
Sbjct: 292 KAQDIAVAAFDAMGCEGLARVD---------CFADLET-------GQITVNEINTMPGFT 335
Query: 217 QTS---FLFQQASKVGFSHSNILRTIIGHACSR 246
S L+Q+A G S+S+++ +I A R
Sbjct: 336 PFSMYPLLWQEA---GMSYSDLITKLIELALQR 365
>gi|284048637|ref|YP_003398976.1| D-alanine--D-alanine ligase [Acidaminococcus fermentans DSM 20731]
gi|283952858|gb|ADB47661.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731]
Length = 310
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 143/349 (40%), Gaps = 79/349 (22%)
Query: 381 NQVVNDLVEGLKKHSWFTGFD-IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 439
N ++N L E G+D +A +L H +++ L VF AVHG GEDG
Sbjct: 26 NAILNALKE--------KGYDAVAIDLDPEHIVDQ---LKASGARVVFNAVHGLYGEDGR 74
Query: 440 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHLADLGVLTINKDVRRKEDLLKTP 497
LQ +LE G+PYTG GV+AS MDKV T NH+ + ++K +R +D P
Sbjct: 75 LQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDK--KRDQD----P 128
Query: 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 557
I E+ + C VKPA G S GV + K L++ L
Sbjct: 129 KARILEEIG--IPC---VVKPATQGSSIGVV-------IVKDEKQLDDALQ--------- 167
Query: 558 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 617
E F D +L + T K E+ GV+
Sbjct: 168 -----------------EAFQYGDHVLCEAFFTGK--------------EVAAGVMMGED 196
Query: 618 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NAL 676
MP V ++ + K+ G P P +T L Q+I + A AL
Sbjct: 197 GRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTRRL----QKIAVAAYEAL 252
Query: 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
G +R D + DNG+ + +EVNT+PGMT +T LI +A + +P
Sbjct: 253 GCSGVARTDLML-ADNGDCIALEVNTIPGMT-ATSLIPKAAAAMGISFP 299
>gi|398347473|ref|ZP_10532176.1| D-alanyl-alanine synthetase A [Leptospira broomii str. 5399]
Length = 323
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 132/316 (41%), Gaps = 63/316 (19%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
F+ HG GEDG++Q L+ G+P+TG GV AS M+K+ T+ L +A+L V +
Sbjct: 60 AFLGFHGTFGEDGSIQGFLKVLGIPFTGSGVKASALAMNKI-TANRLFQVANLSVAPFWE 118
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+KED + P ++ S L +KP G S R+ E+L + E
Sbjct: 119 --LKKEDYIAAPT-----QVESLGLPFPLFLKPVEGGSSYHTYRINAREELVPKLSEFFE 171
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
H I + F+ E+ TN N R +
Sbjct: 172 ----------HEDHA------------ILQKFLSGTEVSCGVWETNTNGKRSILA----- 204
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIMSTEALD 663
+P + G+ +E K++ G +TP P SI +
Sbjct: 205 -----------------LPPTEIIPGGEFFDVESKYKSGLSQEITPARLPESI-----IQ 242
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
K + + L L EG SR D F+ V+ GE I+E NT+PGMT +++L QA + P+
Sbjct: 243 KIQNQSILAHKTLGCEGCSRTD-FIVVE-GEPYILETNTLPGMTETSLLPQQAKAAGIPI 300
Query: 724 YPHQFFRKVLDLGSER 739
+ +R ++D G ER
Sbjct: 301 --QEIYRSLIDQGLER 314
>gi|260892987|ref|YP_003239084.1| D-alanine--D-alanine ligase [Ammonifex degensii KC4]
gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
Length = 308
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 65/294 (22%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN-- 473
++L++ VF+A+HG GEDG++Q LLE G+PYTGPG++AS M+K+AT L
Sbjct: 46 LRLSEVKPDVVFLALHGKGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSA 105
Query: 474 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
L +T++K+ E W + + + + VK G S G+ +
Sbjct: 106 SLPTPDFITLDKEETHDE----------WLQRVKEFRPFPVVVKAPTQGSSLGMNIVRRE 155
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
E+L + AL E P +++ E F+E
Sbjct: 156 EEL---LPALAEAFRYDP-------------------VVLVEEFIEG------------- 180
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
VE+T V+G + ++P + + + E K+ G ++ PP
Sbjct: 181 ------------VEVTAAVLGNRKPV--VLPLIEIVADKGVYDYEAKYTPGKSQHIIPPR 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ +K K+ L GFSRID V+ G I+EVNT+PG+T
Sbjct: 227 ---LPEPWQEKVKELALATYRWLDCRGFSRIDFMVD-HKGNPYILEVNTIPGLT 276
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 42/210 (20%)
Query: 40 VVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
VVVK GSS+G+ + ++ +L +A D V+VE F+EG E TA VL
Sbjct: 136 VVVKAPTQGSSLGMNIVRREEELLPALAEAFRY-----DPVVLVEEFIEG-VEVTAAVLG 189
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ PVVL E+ V +K +++Y KY P + + PPR P
Sbjct: 190 -----NRKPVVLPLIEI---------VADK-GVYDYEAKYTPGKS-QHIIPPRLPEPWQE 233
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
++E A ++ L F+RID + G ++N I G+
Sbjct: 234 KVKELALATYRWLDCRGFSRID-----------------FMVDHKGNPYILEVNTIPGLT 276
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+ S A G S ++ +I A R
Sbjct: 277 EVSLFPDAARAAGISFGELVERLIYLALGR 306
>gi|253699160|ref|YP_003020349.1| D-alanine--D-alanine ligase [Geobacter sp. M21]
gi|259645167|sp|C6DZK9.1|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
Length = 305
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 138/318 (43%), Gaps = 85/318 (26%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
G D+ +LP R LA+E FIA+HG GEDG++Q LLE G+PYTG GV+
Sbjct: 44 VGIDVGRDLPQR--------LAEEKAEVAFIALHGRFGEDGSVQGLLELMGIPYTGSGVL 95
Query: 458 ASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSKLQCKTLC 515
AS +DK+A+ + A G+ L + +RR E+ L P+ +
Sbjct: 96 ASALAIDKIASKVI---FASAGLTLAPYQVLRRGEEFKLANPL--------------PVV 138
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
VKP+R+G S GV ++R P SR ++ E
Sbjct: 139 VKPSREGSSVGVG------------------IVRDP----SRMQAALD-----------E 165
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDI 634
F EIL +G E+ VG++ GK + ++ + G+
Sbjct: 166 AFRYDSEILI--------------EGFIDGREVQVGILDGKA------LGAIEIVPKGEF 205
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
E K+ G ++ P + + + ++ E AL + +SR+D F+ + G+
Sbjct: 206 YDYEAKYTDGGAQHILP---ARLPEAVYGEVLRQGEKAHAALGCDCYSRVD-FLVTETGD 261
Query: 695 VLIIEVNTVPGMTPSTVL 712
++EVNT+PGMT ++L
Sbjct: 262 CFLLEVNTLPGMTDLSLL 279
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
VVVKP+R GSS+GV G++ + + + E D +++E F++ G E +LD
Sbjct: 137 VVVKPSREGSSVGV----GIVRDPSRMQAALDEAFRYDSEILIEGFID-GREVQVGILD- 190
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVIN 156
G G++++ K ++Y KY T A H P R P V
Sbjct: 191 GKAL-----------------GAIEIVPKGEFYDYEAKY--TDGGAQHILPARLPEAVYG 231
Query: 157 SIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+ LG CD ++R+D FL TE G ++N + GM
Sbjct: 232 EVLRQGEKAHAALG-CDCYSRVD--FL---------------VTETGDCFLLEVNTLPGM 273
Query: 216 EQTSFLFQQASKVGFSHSNILRTIIGHA 243
S L + A G + ++ I+ A
Sbjct: 274 TDLSLLPEIAGGAGITFGELVLRILQAA 301
>gi|455788759|gb|EMF40723.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Lora str. TE 1992]
Length = 351
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K +D + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLDSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPVTEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|417792723|ref|ZP_12440047.1| D-alanine--D-alanine ligase [Cronobacter sakazakii E899]
gi|449309511|ref|YP_007441867.1| D-alanine--D-alanine ligase [Cronobacter sakazakii SP291]
gi|333953215|gb|EGL71193.1| D-alanine--D-alanine ligase [Cronobacter sakazakii E899]
gi|449099544|gb|AGE87578.1| D-alanine--D-alanine ligase [Cronobacter sakazakii SP291]
Length = 306
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 137/330 (41%), Gaps = 87/330 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DIRGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|417775531|ref|ZP_12423384.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans str. 2002000621]
gi|418700911|ref|ZP_13261849.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Bataviae str. L1111]
gi|421125376|ref|ZP_15585629.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410437283|gb|EKP86386.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans serovar Grippotyphosa str.
2006006986]
gi|410574856|gb|EKQ37885.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira interrogans str. 2002000621]
gi|410760006|gb|EKR26206.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Bataviae str. L1111]
Length = 320
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 39 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 98
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 99 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 150
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 151 GSSVSVYKITNREQLK-----------------------------------------EKL 169
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 170 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 223
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 224 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 278
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 279 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 319
>gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
Length = 315
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 131/287 (45%), Gaps = 66/287 (22%)
Query: 428 IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD- 486
IA+HG GEDG +Q+LLE G+PYTG GV+AS MDK + + H G+ I +D
Sbjct: 58 IALHGKYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKV---HFEKAGI-RIARDV 113
Query: 487 -VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V R +D+ + + W ++ C VKPA++G S G LT+ A++E
Sbjct: 114 LVERGDDIEQK--IKQW---DAQFPC---VVKPAQEGSSNG---------LTI---AMDE 153
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+LR G IE+ + ++ E F+ KG
Sbjct: 154 QMLR---------QG-IELAFQADDAVLIEQFI---------------------KGR--- 179
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+TV V+G G +L P + + + E K+ G ++ P +T+ L
Sbjct: 180 -EVTVPVLGAKGQEKAL-PVIEIIPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTL--- 234
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ L L G+SR D F+ D G +I+E NT+PGMT +++
Sbjct: 235 QEWAVLAHQVLGCAGYSRTD-FLVPDEGAPVILETNTLPGMTSTSLF 280
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 37/207 (17%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVKP + GSS G+T+A +D +GI L DD V++E F++ G E T VL
Sbjct: 135 VVKPAQEGSSNGLTIA---MDEQMLRQGIELAFQADDAVLIEQFIK-GREVTVPVLGAKG 190
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV +++ K+ ++Y KY + P +F +++
Sbjct: 191 QEKALPV--------------IEIIPKNEFYDYESKY-AIGGSEHICPAQFDEKTTQTLQ 235
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
E A L Q LG ++R D + +P G + + N + GM TS
Sbjct: 236 EWAVLAHQVLGCAGYSRTD-FLVPDE----------------GAPVILETNTLPGMTSTS 278
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
A VG + ++ T I A +R
Sbjct: 279 LFPDGARAVGIDYPELVETFIELAITR 305
>gi|146310302|ref|YP_001175376.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
gi|145317178|gb|ABP59325.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
Length = 306
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 134/310 (43%), Gaps = 65/310 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LL+ G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
RR+ E L+ + +L + VKP+R+G S G++++ A+DLT
Sbjct: 117 VTRREFESGLEVGVNQRIEQL-----ALPVIVKPSREGSSVGMSKVDKADDLT------- 164
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
++ + A F +E+L W G
Sbjct: 165 --------SALALA------------------FQHDEEVLIEK-----------WLGGP- 186
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E TV ++G+ ++PS+ ++ +G E K+ P S + E ++
Sbjct: 187 --EFTVAMLGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---SGLEAEREEE 236
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
K + L G+ RID + D G+ ++E NT PGMT +++ A Q M
Sbjct: 237 LKALVLKAWTVLGCRGWGRIDVMQDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAGMT 293
Query: 725 PHQFFRKVLD 734
Q ++LD
Sbjct: 294 FSQLVVRILD 303
>gi|339010550|ref|ZP_08643120.1| D-alanine--D-alanine ligase [Brevibacillus laterosporus LMG 15441]
gi|338772705|gb|EGP32238.1| D-alanine--D-alanine ligase [Brevibacillus laterosporus LMG 15441]
Length = 382
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 136/321 (42%), Gaps = 69/321 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALNHLADLG 479
+F +HG GEDGT+Q LLE +PY G GVMAS MDK V L+ + +G
Sbjct: 112 VIFPVIHGPNGEDGTVQGLLELADIPYVGTGVMASAVGMDKLMMKNVFAQAGLDQVQYMG 171
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
L + R+ D + +++ KL VKPA G S G+ + +DL
Sbjct: 172 FL--RSQIEREVD-------SVMNQIEQKLGYPCF-VKPANMGSSVGITKAKDRDDL--- 218
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
G +E+ +I E F++ E+ +
Sbjct: 219 -------------------RGALELACKFDRRIIVEEFIKAREV------------EIGV 247
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
GN E+ VIG+ + KE D E K++GG G +L P + +
Sbjct: 248 LGNE---ELRTSVIGEV---------IAAKEFYD---YEAKYKGG-GTDLKIP--ADLPQ 289
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+ D+ + + AL G SR+D F + +N V+I EVNT+PG TP + ++ L
Sbjct: 290 QVADRIAEMAKTAFQALDGSGLSRVDFFYDEENDRVVINEVNTMPGFTPFS--MYPMLFA 347
Query: 720 QPPMYPHQFFRKVLDLGSERF 740
+ + + +++ LG ER+
Sbjct: 348 EAGIPYAELIDQLVQLGLERY 368
>gi|383191618|ref|YP_005201746.1| D-alanine--D-alanine ligase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371589876|gb|AEX53606.1| D-alanine--D-alanine ligase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 306
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 136/326 (41%), Gaps = 79/326 (24%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-- 475
L +E + VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK T L L
Sbjct: 50 LREEGYSKVFIALHGRGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGL 109
Query: 476 --ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
A L ++ + L I ++ + VKP+R+G S G++++
Sbjct: 110 PVAPFVTLHRSQIEEAGQGTLAVKIAEL---------GLPVIVKPSREGSSVGMSKVTTE 160
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
++L + AL+E F D +L
Sbjct: 161 KEL---LPALQEG------------------------------FRHDDNVLI-------- 179
Query: 594 ADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
+W+ E TV ++G + +MPS+ ++ +G + K+
Sbjct: 180 ---------EKWLSGPEYTVAIVG-----NQVMPSIRIQPAGTFYDYQAKYLSDETQYFC 225
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P S EA ++ + L A AL G+ R+D + D G ++EVNT PGMT S
Sbjct: 226 PSGLS----EAQEQQLTALALQAYQALDCSGWGRVDVMQDGD-GNFNLLEVNTSPGMT-S 279
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDL 735
L+ A +P FR +L+L
Sbjct: 280 HSLVPMAAKHAGLSFPQLVFR-ILEL 304
>gi|365969005|ref|YP_004950566.1| D-alanine--D-alanine ligase [Enterobacter cloacae EcWSU1]
gi|365747918|gb|AEW72145.1| D-alanine--D-alanine ligase B [Enterobacter cloacae EcWSU1]
Length = 309
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 136/312 (43%), Gaps = 69/312 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 61 VFIALHGRGGEDGTLQGLLELTGMPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 119
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
RR+ + + D + ++L + VKP+R+G S G++++ AEDL+
Sbjct: 120 LTRRE---FEMGLSDSVNARIAELGLPVI-VKPSREGSSVGMSKVEKAEDLS-------- 167
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
++ + A F +E+L +W
Sbjct: 168 -------SALALA------------------FQHDEEVLI-----------------EKW 185
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P S + E
Sbjct: 186 LSGPEFTVAMLGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---SGLEAERE 237
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ + + L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 TDLQSLVVKAWHVLGCRGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAG 294
Query: 723 MYPHQFFRKVLD 734
M Q ++LD
Sbjct: 295 MSFSQLVVRILD 306
>gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. 56601]
gi|386074129|ref|YP_005988446.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. IPAV]
gi|417761063|ref|ZP_12409077.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000624]
gi|417763974|ref|ZP_12411947.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|418667864|ref|ZP_13229269.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|418672733|ref|ZP_13234069.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000623]
gi|418692393|ref|ZP_13253471.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans str. FPW2026]
gi|418715902|ref|ZP_13275989.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 08452]
gi|418726330|ref|ZP_13284941.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. UI 12621]
gi|421137229|ref|ZP_15597316.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|39930898|sp|Q8F4I2.1|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. 56601]
gi|353457918|gb|AER02463.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
str. IPAV]
gi|400353806|gb|EJP05959.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Bulgarica str. Mallika]
gi|400357626|gb|EJP13746.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans str. FPW2026]
gi|409943057|gb|EKN88660.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000624]
gi|409960240|gb|EKO23994.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. UI 12621]
gi|410018443|gb|EKO85281.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans serovar Grippotyphosa str. Andaman]
gi|410580421|gb|EKQ48246.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. 2002000623]
gi|410756309|gb|EKR17934.1| D-ala D-ala ligase N-terminal domain protein [Leptospira
interrogans serovar Pyrogenes str. 2006006960]
gi|410788130|gb|EKR81856.1| D-alanine--D-alanine ligase [Leptospira interrogans str. UI 08452]
gi|456821618|gb|EMF70124.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Canicola str. LT1962]
gi|456970742|gb|EMG11482.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 351
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|386775234|ref|ZP_10097612.1| D-alanine--D-alanine ligase [Brachybacterium paraconglomeratum
LC44]
Length = 371
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 116/288 (40%), Gaps = 54/288 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V+ +HG GEDGT+Q +LE +PY G G++AS T MDK AT +AL +
Sbjct: 107 VWPLLHGPYGEDGTVQGMLEMLDIPYVGSGILASATAMDKAATKVALRAAG----IECAP 162
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ ED + L + + VKPAR G S GV+R+ A L
Sbjct: 163 GIVVHEDRWADGAGRVLAHL-EQHHPRPWFVKPARAGSSLGVSRVEVASQLE-------- 213
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
H M P++LI E V R
Sbjct: 214 -------------HAMKTAFREDPKVLIEEGLV------------------------GRE 236
Query: 606 VEITVGVIGKCGSMHSLMPS-VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
+E V G + +P V V D E K+ G +++ P + L++
Sbjct: 237 IECGVLAARDGGEPRTTLPGEVKVGADLDFYDYEAKYFGKGTVSIDVPAG--LPDGVLEE 294
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ AL LEG +R+D FV D+ V++ EVNT+PG TP ++
Sbjct: 295 AREIARRAFGALGLEGLARVDMFVTADH-RVIVNEVNTMPGFTPYSMF 341
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 36/208 (17%)
Query: 42 VKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP RAGSS+GV+ VA + ++K A E D +V++E L G E VL
Sbjct: 192 VKPARAGSSLGVSRVEVASQLEHAMKTA---FRE--DPKVLIEEGLVG-REIECGVLAAR 245
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G + P LP EV++ +D ++Y KY V+ P P V+
Sbjct: 246 DGGE--PRTTLPGEVKVG--ADLD------FYDYEAKYFGKGTVSIDVPAGLPDGVLEEA 295
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
RE A F LGL AR+D +F +++ + ++ ++N + G
Sbjct: 296 REIARRAFGALGLEGLARVD---------MFVTADHR--------VIVNEVNTMPGFTPY 338
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSR 246
S +G S+++++ ++ A SR
Sbjct: 339 SMFPVLWESMGLSYADLIADLVDQAASR 366
>gi|410642383|ref|ZP_11352895.1| D-alanine-D-alanine ligase [Glaciecola chathamensis S18K6]
gi|410138055|dbj|GAC11082.1| D-alanine-D-alanine ligase [Glaciecola chathamensis S18K6]
Length = 326
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 133/331 (40%), Gaps = 77/331 (23%)
Query: 383 VVNDLV-EGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQ 441
V+N LV G+ H GFD AD + +L ++ V I +HG GEDG+LQ
Sbjct: 49 VLNALVGAGVNAH----GFDPADR--------QLHELVEQKFDRVLIMLHGRGGEDGSLQ 96
Query: 442 SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501
L+ +PYTG GV+ S CMDK+ + LG+ T N ++ K D DI
Sbjct: 97 GALQQMNMPYTGTGVLGSALCMDKIRSKQVWQS---LGLPTANYEIADKRDFNAANCGDI 153
Query: 502 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 561
L + VKPA++G S G+A++ A L ++
Sbjct: 154 MTRLGD-----LVMVKPAQEGSSIGMAKVSNAHQLAAAIQ-------------------- 188
Query: 562 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 621
+ F D++L +G+ V + G+
Sbjct: 189 -------------QAFEYDDKVLLEQ----------FIQGSEYTVSLLNGIA-------- 217
Query: 622 LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGF 681
+PS+++ D E K+Q + P S +S E Q +A+ G+
Sbjct: 218 -LPSISMSTPRDFYDYEAKYQSNSTEYFCP---SGLSDEQETDLAQLALNAFDAVAGSGW 273
Query: 682 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
RID F+ G+ ++E NTVPGMT +++
Sbjct: 274 GRID-FMQDAQGQFYLLEANTVPGMTEKSLV 303
>gi|399018443|ref|ZP_10720622.1| D-alanine--D-alanine ligase [Herbaspirillum sp. CF444]
gi|398101559|gb|EJL91775.1| D-alanine--D-alanine ligase [Herbaspirillum sp. CF444]
Length = 343
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 129/310 (41%), Gaps = 67/310 (21%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + +LA E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS M
Sbjct: 44 DAHPFDPAERSLAELAAEKFDRVFIALHGRYGEDGTLQGALEQLGIPYTGPGVMASSIAM 103
Query: 464 DKVATS-LALNH-LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 521
DKV T + + H L + ++ +E+L + P V L +K +
Sbjct: 104 DKVMTKRIWIGHDLPTPRFIVLDSAATPREELRQVPDV----------LGLPLMLKAPHE 153
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G + G+A++ D+ A C +R +++ E FV
Sbjct: 154 GSTIGIAKVAGYSDMQ---DAFNLC---------ARYDA----------VVLAEEFV--- 188
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS---LMPSVTVKESGDILSLE 638
T + E+TV V+GK S + P + ++ +
Sbjct: 189 --------TGR--------------ELTVPVLGKGTSGENKAKAYPVIEIRAPEGNYDYQ 226
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLI 697
K+ L P P EAL + Q + + A NAL G+SR+D + + E +
Sbjct: 227 HKYFTDDTKYLCPAPLD----EALTQRVQELAVKAYNALGCRGWSRVDFMLRASDNEPFL 282
Query: 698 IEVNTVPGMT 707
+E+NT PGMT
Sbjct: 283 LEINTSPGMT 292
>gi|401677438|ref|ZP_10809413.1| D-alanine--D-alanine ligase [Enterobacter sp. SST3]
gi|400215286|gb|EJO46197.1| D-alanine--D-alanine ligase [Enterobacter sp. SST3]
Length = 306
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 137/312 (43%), Gaps = 69/312 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LL+ G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
RR+ +L + D + ++L + VKP+R+G S G++++ A+DL
Sbjct: 117 LTRREFEL---GLPDSVNARIAELGLPVI-VKPSREGSSVGMSKVDKADDLA-------- 164
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
++ + A F DE+L +W
Sbjct: 165 -------SALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P S + E
Sbjct: 183 LSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFCP---SGLEAERE 234
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
D + + + L +G+ RID + D G+ ++E NT PGMT +++ A Q
Sbjct: 235 DDLQSLVLKAWHVLGCQGWGRIDVMQDRD-GQFYLLEANTSPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLD 734
M Q ++LD
Sbjct: 292 MSFSQLVVRILD 303
>gi|383812778|ref|ZP_09968205.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
gi|383298188|gb|EIC86495.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
Length = 309
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 139/329 (42%), Gaps = 83/329 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L E VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK T L L
Sbjct: 52 RLKDEGYGKVFIALHGRGGEDGTLQGVLEHLDLPYTGSGVMASALTMDKFRTKLVWEALG 111
Query: 477 DLGVLTINKDVR-RKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
L ++ V K+DL + ++T+ L VKP+R+G S G++++ E+
Sbjct: 112 ----LPVSPFVALNKKDLAAAGQGALSEKITA--LGLPLIVKPSREGSSVGMSKVNAPEE 165
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L + ALEE F+ D++L
Sbjct: 166 L---LPALEEA------------------------------FLHDDDLLI---------- 182
Query: 596 RLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
+W+ E TV ++G +MPS+ ++ +G + K+ P
Sbjct: 183 -------EKWLSGPEYTVAIVGD-----QVMPSIRIQPAGIFYDYQAKYISDETQYFCP- 229
Query: 653 PASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGM 706
LD +Q EL ALQ G+ R+D + + G ++EVNT PGM
Sbjct: 230 -------SGLD-AQQEQELADLALQAYRALDCSGWGRVDVMQDSE-GNFNLLEVNTSPGM 280
Query: 707 TPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
T S L+ A + +P Q ++L+L
Sbjct: 281 T-SHSLVPMAAKQAGLSFP-QLVARILEL 307
>gi|417783211|ref|ZP_12430934.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. C10069]
gi|409953912|gb|EKO08408.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
interrogans str. C10069]
Length = 351
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDVDIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYREGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|365846620|ref|ZP_09387122.1| D-ala D-ala ligase protein [Yokenella regensburgei ATCC 43003]
gi|364573752|gb|EHM51239.1| D-ala D-ala ligase protein [Yokenella regensburgei ATCC 43003]
Length = 309
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 137/327 (41%), Gaps = 97/327 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 481
VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDKV + L + +A L
Sbjct: 61 VFIALHGRGGEDGTLQGLLELIGMPYTGSGVMASAISMDKVRSKLLWSGAGLPVAPWVAL 120
Query: 482 TINK-------DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
T N+ + +++ L P++ VKP+R+G S G++++ +
Sbjct: 121 TRNEFNAGLSAETKQRIAALGLPLI----------------VKPSREGSSVGMSKVLESA 164
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+L S + A F DE+L
Sbjct: 165 ELA---------------ESLALA------------------FQHDDEVLI--------- 182
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+W+ E TV V+G+ ++PS+ ++ +G E K+ P
Sbjct: 183 --------EKWLSGPEFTVAVLGE-----EILPSIRIQVAGTFYDYEAKYLSDETQYFCP 229
Query: 652 PPASIMSTEALDKCKQRIELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + + L+A A Q+ G+ RID ++ D+G+ ++E NT PGMT
Sbjct: 230 ------GLEDPAREAEMQSLVAKAWQVLGCRGWGRIDVMLD-DDGQFYLLEANTSPGMTS 282
Query: 709 STVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q M Q ++LDL
Sbjct: 283 HSLVPMAA--RQAGMSFSQLVVRILDL 307
>gi|291616274|ref|YP_003519016.1| DdlB [Pantoea ananatis LMG 20103]
gi|386080664|ref|YP_005994189.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis PA13]
gi|291151304|gb|ADD75888.1| DdlB [Pantoea ananatis LMG 20103]
gi|354989845|gb|AER33969.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis PA13]
Length = 305
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 135/320 (42%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
++L + VFIA+HG GEDGTLQ++LE +PYTG GVMAS MDK+ T L
Sbjct: 47 LELTAQGFEKVFIALHGRGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 106
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
L K V + +++ + D E L VKP+ +G S G++R+ D
Sbjct: 107 G----LPAGKFVWITREQMQSGL-DAATEAAISALGLPLFVKPSSEGSSVGISRVNQLSD 161
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L+ ALEE R N ++ E F+ +
Sbjct: 162 LSA---ALEEA-FRHDDN------------------VLVEAFLSGE-------------- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TVG++G ++P++ +K + + E K+ P
Sbjct: 186 -----------EYTVGILGD-----QILPAIKIKTASEFYDYEAKYISDDTQYFCPAG-- 227
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + +Q + AL G+ R+D + D G ++E NT PGMT +++
Sbjct: 228 -LSAEREAELQQLVWSAWRALGCSGWGRVDVMTD-DQGHFQLLEANTSPGMTSHSLVPMA 285
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A +Q + Q ++L+L
Sbjct: 286 A--KQAGLTFSQLVVRILEL 303
>gi|322834418|ref|YP_004214445.1| D-alanine--D-alanine ligase [Rahnella sp. Y9602]
gi|384259640|ref|YP_005403574.1| D-alanine--D-alanine ligase [Rahnella aquatilis HX2]
gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
gi|380755616|gb|AFE60007.1| D-alanine--D-alanine ligase [Rahnella aquatilis HX2]
Length = 306
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 135/333 (40%), Gaps = 93/333 (27%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E + VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK T L L
Sbjct: 50 LKEEGYSKVFIALHGRGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALG- 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWH---------ELTSKLQCKTL--CVKPARDGCSTG 526
L TP V + L +K+ L VKP+R+G S G
Sbjct: 109 ---------------LPVTPFVALHRAQIEEAGQGALAAKIAELGLPVIVKPSREGSSVG 153
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
++++ ++L + AL+E F D +L
Sbjct: 154 MSKVTTEKEL---LPALQEG------------------------------FRHDDNVLI- 179
Query: 587 SQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 643
+W+ E TV ++G +MPS+ ++ +G + K+
Sbjct: 180 ----------------EKWLSGPEYTVAIVGS-----QVMPSIRIQPAGTFYDYQAKYLS 218
Query: 644 GTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
P S EA ++ + L A AL G+ R+D + D G ++EVNT
Sbjct: 219 DETQYFCPSGLS----EAQEQQLTALALQAYQALDCSGWGRVDVMQDGD-GNFNLLEVNT 273
Query: 703 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
PGMT S L+ A +P FR +L+L
Sbjct: 274 SPGMT-SHSLVPMAAKHAGLSFPQLVFR-ILEL 304
>gi|407804261|ref|ZP_11151087.1| D-alanine--D-alanine ligase [Alcanivorax sp. W11-5]
gi|407021790|gb|EKE33551.1| D-alanine--D-alanine ligase [Alcanivorax sp. W11-5]
Length = 314
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 123/303 (40%), Gaps = 91/303 (30%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDG +Q +LE GVPYTG GVMAS MDKV T L
Sbjct: 69 VFIALHGRGGEDGVIQGVLEHLGVPYTGSGVMASAIGMDKVRTKLLWAGAG--------- 119
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
L TP + + L VKPAR+G S G+ ++ A++L + A +E
Sbjct: 120 --------LPTPAFYVAGSADAPALGFPLMVKPAREGSSIGMRKVDNAQELAGAIAAAQE 171
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
DE+L RW
Sbjct: 172 Y---------------------------------DDEVLV-----------------ERW 181
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
V E TV ++G +P++ ++ + K++ T L P L
Sbjct: 182 VTGAEFTVAILG-----DRALPAIRLETPNSFYDFDAKYRADTTRYLCPC--------GL 228
Query: 663 DKCKQRIELIANALQ------LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
D+ ++ EL A AL+ EG+ R+D + D G+ ++E+NTVPGMT +++ A
Sbjct: 229 DEVQEN-ELKALALRAFRAVGAEGWGRVDVMQDAD-GQFQLLEINTVPGMTDHSLVPMAA 286
Query: 717 LSE 719
+E
Sbjct: 287 RAE 289
>gi|332305227|ref|YP_004433078.1| D-alanine/D-alanine ligase [Glaciecola sp. 4H-3-7+YE-5]
gi|332172556|gb|AEE21810.1| D-alanine/D-alanine ligase [Glaciecola sp. 4H-3-7+YE-5]
Length = 326
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 133/331 (40%), Gaps = 77/331 (23%)
Query: 383 VVNDLV-EGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQ 441
V+N LV G+ H GFD AD + +L ++ V I +HG GEDG+LQ
Sbjct: 49 VLNALVGAGVNAH----GFDPADR--------QLHELVEQKFDRVLIMLHGRGGEDGSLQ 96
Query: 442 SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501
L+ +PYTG GV+ S CMDK+ + LG+ T N ++ K D DI
Sbjct: 97 GALQQMNMPYTGTGVLGSALCMDKIRSKQVWQS---LGLPTANYEIADKRDFNAANCGDI 153
Query: 502 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 561
L + VKPA++G S G+A++ A L ++
Sbjct: 154 MTRLGD-----LVMVKPAQEGSSIGMAKVSNAHQLAAAIQ-------------------- 188
Query: 562 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 621
+ F D++L +G+ V + G+
Sbjct: 189 -------------QAFEYDDKVLLEQ----------FIQGSEYTVSLLNGIA-------- 217
Query: 622 LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGF 681
+PS+++ D E K+Q + P S +S E Q +A+ G+
Sbjct: 218 -LPSISMSTPRDFYDYEAKYQSNSTEYFCP---SGLSDEQETDLAQLALNAFDAVAGTGW 273
Query: 682 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
RID F+ G+ ++E NTVPGMT +++
Sbjct: 274 GRID-FMQDAQGQFYLLEANTVPGMTEKSLV 303
>gi|418706126|ref|ZP_13266976.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410764195|gb|EKR34912.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Hebdomadis str. R499]
Length = 351
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDVDIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|410644634|ref|ZP_11355110.1| D-alanine-D-alanine ligase [Glaciecola agarilytica NO2]
gi|410135808|dbj|GAC03509.1| D-alanine-D-alanine ligase [Glaciecola agarilytica NO2]
Length = 326
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 133/331 (40%), Gaps = 77/331 (23%)
Query: 383 VVNDLV-EGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQ 441
V+N LV G+ H GFD AD + +L ++ V I +HG GEDG+LQ
Sbjct: 49 VLNALVGAGVNAH----GFDPADR--------QLHELVEQKFDRVLIMLHGRGGEDGSLQ 96
Query: 442 SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501
L+ +PYTG GV+ S CMDK+ + LG+ T N ++ K D DI
Sbjct: 97 GALQQMNMPYTGTGVLGSALCMDKIRSKQVWQS---LGLPTANYEIADKRDFNAANCGDI 153
Query: 502 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 561
L + VKPA++G S G+A++ A L ++
Sbjct: 154 MTRLGD-----LVMVKPAQEGSSIGMAKVSNAHQLAAAIQ-------------------- 188
Query: 562 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 621
+ F D++L +G+ V + G+
Sbjct: 189 -------------QAFEYDDKVLLEQ----------FIQGSEYTVSLLNGIA-------- 217
Query: 622 LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGF 681
+PS+++ D E K+Q + P S +S E Q +A+ G+
Sbjct: 218 -LPSISMSTPRDFYDYEAKYQSNSTEYFCP---SGLSDEQETDLAQLALNAFDAVAGTGW 273
Query: 682 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
RID F+ G+ ++E NTVPGMT +++
Sbjct: 274 GRID-FMQGAQGQFYLLEANTVPGMTEKSLV 303
>gi|229918692|ref|YP_002887338.1| D-alanine--D-alanine ligase [Exiguobacterium sp. AT1b]
gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
Length = 308
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 122/286 (42%), Gaps = 68/286 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V A+HG GEDG +QSLLE G+PYTG GV+AS MDK A ++
Sbjct: 56 VVSALHGKYGEDGRVQSLLEMAGIPYTGSGVLASALAMDK----------ARAKIIFAAS 105
Query: 486 DVRRKEDLL---KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+R D+L + I E + C VKPA++G S G LT+ A
Sbjct: 106 GIRVARDVLIESRESIDAKVAEWGMEFPC---VVKPAQEGSSNG---------LTI---A 150
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
++E +LR E E F+ S ++ +
Sbjct: 151 MDEAMLR-----------------------------EGIEKAFACDSA------VLVEQY 175
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E+TV VIG G +L P + + + E K+ G I++ P +S +
Sbjct: 176 IKGKELTVPVIGNFGKEEAL-PVIEIIPKNEFYDYESKYTEGGSIHVCPAE---ISDDLT 231
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ +Q L AL G+SR D F+ + G+ I+E NT+PGMTP
Sbjct: 232 SEVQQAAVLAHRALGCSGYSRSD-FLVSEEGKAYILETNTLPGMTP 276
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 49/213 (23%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRVVVELFLEGGSEFTAIV 94
VVKP + GSS G+T+A + ++ EGI D V+VE +++ G E T V
Sbjct: 135 VVKPAQEGSSNGLTIAMD--------EAMLREGIEKAFACDSAVLVEQYIK-GKELTVPV 185
Query: 95 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIV 153
+ + PV +++ K+ ++Y KY T+ + H P
Sbjct: 186 IGNFGKEEALPV--------------IEIIPKNEFYDYESKY--TEGGSIHVCPAEISDD 229
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 213
+ + +++ A L + LG ++R D FL S E G + N +
Sbjct: 230 LTSEVQQAAVLAHRALGCSGYSRSD--FLVS---------------EEGKAYILETNTLP 272
Query: 214 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
GM S A VG S+ +L I A R
Sbjct: 273 GMTPLSLFPDSAKTVGISYGELLERFIELALER 305
>gi|168185902|ref|ZP_02620537.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
gi|169295873|gb|EDS78006.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
Length = 343
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 118/287 (41%), Gaps = 65/287 (22%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGV 480
VF +HG GEDGT+Q L + +P GPGVMAS CMDKV T L + AD V
Sbjct: 85 VVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMASAVCMDKVYTKYVLENFGVKQADYVV 144
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ + +K D++ T + +KL +KP+ G S G+
Sbjct: 145 VNAHDYKNKKTDIIST--------IENKLGYDVF-IKPSNSGSSVGI------------- 182
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
S+AH E+ + E L F+ V + L
Sbjct: 183 ---------------SKAHNRQELESGLEEALKFDRKVLVEVAL---------------- 211
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
N+R EI V V+G M + P V + + E K+ L P + +S E
Sbjct: 212 -NAR--EIEVAVLGNDEPM-AATPGEIVP-ANEFYDYEAKYSNAQSKLLLP---ANLSLE 263
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
L+K K+ I L G SR+D V+ + EV + E+NT+PG T
Sbjct: 264 KLEKVKELAVKIFKMLDCAGMSRVDFLVDKETEEVYLNEINTIPGFT 310
>gi|146296394|ref|YP_001180165.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|166198476|sp|A4XJ89.1|DDL_CALS8 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|145409970|gb|ABP66974.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 364
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 178/471 (37%), Gaps = 136/471 (28%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG ++E +VS++S +V NL E+ P + I D DS
Sbjct: 5 KVAVLFGGVSTEHEVSIVSAKSVMQNLDK-EKYEIIPIGITKEGKWLL-YTGKIEDLDSK 62
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
W++ YS+ C I PDR LV+ + F
Sbjct: 63 ----WTM-YSI-----------ECF--ISPDRTK----------KALVKIKDSEATFIDI 94
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ VF +HG GEDGT+Q LLE G+PY G GV++S
Sbjct: 95 DV-----------------------VFPVLHGLNGEDGTVQGLLELSGIPYVGCGVLSSA 131
Query: 461 TCMDKV-ATSLALNHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKL 509
CMDK A LAL G L I KD +RR E P+
Sbjct: 132 LCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVF---------- 181
Query: 510 QCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
VKPA G S G+++ A+D + A+ E L
Sbjct: 182 ------VKPANSGSSVGISK---AKDKDELILAIHEAFLY-------------------- 212
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
D + Q+ N GNS EI V +G+ ++P
Sbjct: 213 -----------DTKILIEQAINAREIECAVLGNS---EILVSALGE------IVP----- 247
Query: 630 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN 689
S + S E K+ G+ + P + + D+ K+ I + G +RID FV+
Sbjct: 248 -SREFYSYEAKYIDGSSELIIPAK---LEKQVEDEIKELAVKIYKLFECSGMARIDFFVD 303
Query: 690 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM-YPHQFFRKVLDLGSER 739
+ +V EVNT+PG T ++ ++ L E + YP Q K++ L E+
Sbjct: 304 KETNKVYFNEVNTIPGFT--SISMYPKLMEYSGIPYP-QLLDKLIQLAIEK 351
>gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
FB024-16]
gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
FB024-16]
Length = 374
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 71/303 (23%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTINKDV- 487
+HG GEDGT+Q L E GVPYTG GV AS CMDK T L +G + D
Sbjct: 113 LHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYA 172
Query: 488 -RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
R +E + ++D+ + VKP+R G S GV+R+ E+ V A
Sbjct: 173 WRHRESAVPAEVLDL---------GLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVA---- 219
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNADRLMWKGNSRW 605
+R H P++++ V E+ + + + A R + G
Sbjct: 220 ---------ARRHD--------PKVIVEAGVVGAREVECAVLEGRDGAAPRTAFPGE--- 259
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA--SIMSTEALD 663
V +K++ + E K+ ++L+ P +++ D
Sbjct: 260 --------------------VVMKQTPGLYDFESKYFAQDAVSLSIPAQIPELVAKRICD 299
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+Q EL++ EG +R+D F + G +++ E+NT+PGMTP ++ P M
Sbjct: 300 YARQAFELVSG----EGLARVDFFYVEETGRLILNEINTMPGMTPFSLF--------PGM 347
Query: 724 YPH 726
+ H
Sbjct: 348 WEH 350
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP+RAGSS+GV+ +++ ++ + ++ D +V+VE + G E VL+
Sbjct: 191 VFVKPSRAGSSLGVSR----VEAWEEFEAAVVAARRHDPKVIVEAGVVGAREVECAVLEG 246
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G F G V +++ ++++ KY V+ P + P +V
Sbjct: 247 RDG----------AAPRTAFPGEVVMKQTPGLYDFESKYFAQDAVSLSIPAQIPELVAKR 296
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I + A F+ + AR+D +++ E G ++ +IN + GM
Sbjct: 297 ICDYARQAFELVSGEGLARVDFFYV----------------EETGRLILNEINTMPGMTP 340
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACS 245
S +G + +++ +I A S
Sbjct: 341 FSLFPGMWEHMGMPYQDLVTELIEIALS 368
>gi|407477504|ref|YP_006791381.1| D-alanine--D-alanine ligase [Exiguobacterium antarcticum B7]
gi|407061583|gb|AFS70773.1| D-alanine--D-alanine ligase [Exiguobacterium antarcticum B7]
Length = 314
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 66/287 (22%)
Query: 428 IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV 487
IA+HG GEDG +Q+LLE G+PYTG GV+AS MDK + + H G+ I +DV
Sbjct: 58 IALHGKFGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKV---HFEKAGI-RIARDV 113
Query: 488 --RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R +D+ + + W+ + C VKPA++G S G LT+ A++E
Sbjct: 114 LIERGDDIEQK--IASWN---GQFPC---VVKPAQEGSSNG---------LTI---AMDE 153
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+LR G I++ E ++ E F+ KG
Sbjct: 154 QMLR---------QG-IDLAFTADEAVLIEQFI---------------------KGR--- 179
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+TV V+G G +L P + + + E K+ G ++ P +T+ L
Sbjct: 180 -EVTVPVLGTKGEEKAL-PVIEIIPKNEFYDYESKYAIGGSEHICPAQFDEATTQTLQDW 237
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
L L G+SR D F+ ++G+ +I+E NT+PGMT +++
Sbjct: 238 AV---LAHQVLGCAGYSRTD-FLVPESGQPVILETNTLPGMTATSLF 280
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 44/245 (17%)
Query: 3 KQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDS 62
K G L++ + E ++++W N P VVKP + GSS G+T+A +D
Sbjct: 104 KAGIRIARDVLIERGDDIEQKIASW---NGQFP----CVVKPAQEGSSNGLTIA---MDE 153
Query: 63 LKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSV 121
+GI L D+ V++E F++ G E T VL PV +
Sbjct: 154 QMLRQGIDLAFTADEAVLIEQFIK-GREVTVPVLGTKGEEKALPV--------------I 198
Query: 122 DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 181
++ K+ ++Y KY + P +F ++++ A L Q LG ++R D +
Sbjct: 199 EIIPKNEFYDYESKY-AIGGSEHICPAQFDEATTQTLQDWAVLAHQVLGCAGYSRTD-FL 256
Query: 182 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG 241
+P S G + + N + GM TS A VG + ++ T I
Sbjct: 257 VPES----------------GQPVILETNTLPGMTATSLFPDGARAVGIDYPELVETFIE 300
Query: 242 HACSR 246
A SR
Sbjct: 301 LAISR 305
>gi|421086340|ref|ZP_15547191.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira santarosai str. HAI1594]
gi|421102328|ref|ZP_15562932.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410367442|gb|EKP22826.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410431905|gb|EKP76265.1| putative D-alanine--D-alanine ligase N-terminal domain protein
[Leptospira santarosai str. HAI1594]
Length = 320
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + F+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 39 EEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 98
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 99 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 150
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 151 GSSVSVYKITNREQLK-----------------------------------------EKL 169
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 170 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 223
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 224 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 278
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 279 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 319
>gi|423111473|ref|ZP_17099167.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5243]
gi|423112508|ref|ZP_17100199.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5245]
gi|376376672|gb|EHS89449.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5243]
gi|376390885|gb|EHT03567.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5245]
Length = 306
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 138/316 (43%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R++ + + D+ +L + L VKP+R+G S G++++ E
Sbjct: 117 LTRKQFEAGLS--ADVEQQLLAL--GLPLIVKPSREGSSVGMSKVS------------ES 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
C L+ N+ + A F DE+L +W
Sbjct: 161 CALQ---NALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIMST 659
+ E TV ++G+ ++PS+ ++ +G E K+ P PA
Sbjct: 183 LSGPEFTVAMVGE-----EILPSIRIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESEI 237
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+AL ++ ++L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 238 QAL------VQKAWDSLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q M Q ++LDL
Sbjct: 289 QAGMSFSQLVVRILDL 304
>gi|253689951|ref|YP_003019141.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259645170|sp|C6DEU1.1|DDL_PECCP RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|251756529|gb|ACT14605.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 306
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 130/317 (41%), Gaps = 84/317 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E +FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 50 LKEEGFTKIFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGL 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
+ D R+ ++ ++ + L L VKP+R+G S G++++ +L
Sbjct: 110 PVSPYVALDRRQYSEMAANALLATFTHL-----GLPLIVKPSREGSSVGMSKVNTLSELP 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
ALEE F D+IL
Sbjct: 165 A---ALEEA------------------------------FRHDDDILV------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G ++PS+ ++ +G E K+ P
Sbjct: 180 -----EKWLSGPEYTVAILGD-----EVLPSIRIQPAGTFYDYEAKYLSDDTQYFCPSGL 229
Query: 655 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
S D+ +Q + +A A+ G+ R+D ++ D G ++EVNT PGMT +
Sbjct: 230 S-------DEKEQELAGLAMAAYRAVGCSGWGRVDFMLDSD-GAFYLLEVNTSPGMTSHS 281
Query: 711 VLIHQALSEQPPMYPHQ 727
++ PM HQ
Sbjct: 282 LV---------PMAAHQ 289
>gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894]
gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894]
Length = 306
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 137/330 (41%), Gaps = 87/330 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V R+ DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAQWVALERQ----------DITGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAGREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 375
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 124/294 (42%), Gaps = 75/294 (25%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK---- 485
+HG GEDGT+Q L E GVPYTG GV AS MDK + L H G + + +
Sbjct: 114 LHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEH----GGIPVGRYHVI 169
Query: 486 ---DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
D R + D + TPI+ W + VKPAR G S GV R+ +D V A
Sbjct: 170 SDFDWRHRADEVPTPILS-W--------GLPVFVKPARAGSSLGVTRVDSWQDFEAAVVA 220
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+R H P++++ E V+
Sbjct: 221 -------------ARRHD--------PKVIV-EAAVQ----------------------G 236
Query: 603 SRWVEITVGVIGKCGSMHSLMP--SVTVKESGDILSLEEKFQGGTGINLTPP---PASIM 657
+R +E V + G+ G P V + + + + K+ + L P PA +
Sbjct: 237 AREIECAV-LEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIPAGV- 294
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ + +Q +++ EG SR+D F D GE+++ EVNT+PGMTP ++
Sbjct: 295 AAQIQSYARQAFQILGG----EGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSL 344
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 32/203 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP RAGSS+GVT +DS + + ++ D +V+VE ++G E VL+
Sbjct: 192 VFVKPARAGSSLGVTR----VDSWQDFEAAVVAARRHDPKVIVEAAVQGAREIECAVLEG 247
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
+G P P EV + +++++ KY + V P + P V
Sbjct: 248 RAG--GAPRTTPPGEVVMV--------STPGMYDFQSKYFANEAVQLQIPAQIPAGVAAQ 297
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I+ A FQ LG +R+D +++P + G I+ ++N + GM
Sbjct: 298 IQSYARQAFQILGGEGLSRVDFFYVPDT----------------GEIILNEVNTMPGMTP 341
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S VG S+++++ +I
Sbjct: 342 YSLYPGMWENVGLSYTDLVTELI 364
>gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|59797586|sp|Q72R93.1|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 351
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + F+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|421728278|ref|ZP_16167433.1| D-alanine--D-alanine ligase [Klebsiella oxytoca M5al]
gi|410370959|gb|EKP25685.1| D-alanine--D-alanine ligase [Klebsiella oxytoca M5al]
Length = 306
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 136/316 (43%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R++ D + V+ + S L L +KP+R+G S G++++ E
Sbjct: 117 LTRKQFDAGLSAEVE---QQISALGLP-LIIKPSREGSSVGMSKVN------------ES 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
C L+ N+ + A F DE+L +W
Sbjct: 161 CALQ---NALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIMST 659
+ E TV ++G+ ++PS+ ++ +G E K+ P PA
Sbjct: 183 LSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESEI 237
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+AL ++ +L G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 238 QAL------VQKAWESLGCYGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q M Q ++LDL
Sbjct: 289 QAGMSFSQLVVRILDL 304
>gi|389842230|ref|YP_006344314.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ES15]
gi|387852706|gb|AFK00804.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ES15]
Length = 306
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 137/330 (41%), Gaps = 87/330 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V R+ DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAQWVALERQ----------DITGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMTFSQLVVRILEL 304
>gi|417925705|ref|ZP_12569124.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
SY403409CC001050417]
gi|341591331|gb|EGS34539.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
SY403409CC001050417]
Length = 350
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 124/312 (39%), Gaps = 71/312 (22%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
+L + S++E I+ +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 DLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 465 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
K T+ LN + A VL N D KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKT--------------SKAVYVKPCN 174
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
G S GV R E+L KA++ N+F IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---KAIQ--------NAFQYDR----------RILVEEEIIGP 213
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ LTP P M + K + E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDSKTEMLTPFP---MDEKLELKARHLAEKVYKLMSLSGFSRVDMFVK--DNELWVNEI 301
Query: 701 NTVPGMTPSTVL 712
NTVPG+TP ++
Sbjct: 302 NTVPGLTPHSMF 313
>gi|429084641|ref|ZP_19147641.1| D-alanine--D-alanine ligase B [Cronobacter condimenti 1330]
gi|426546328|emb|CCJ73682.1| D-alanine--D-alanine ligase B [Cronobacter condimenti 1330]
Length = 306
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 137/325 (42%), Gaps = 77/325 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL----CVKPARDGCSTGVARLCCA 533
L V RR IV+ E T K + L VKP+R+G S G++++ A
Sbjct: 109 LPVAPWVALERRD-------IVNGLSE-TQKARIAALGLPVIVKPSREGSSVGMSKVDSA 160
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
+ LT ALE L FE E+L
Sbjct: 161 DALT---HALE---------------------------LAFE---HDSEVLV-------- 179
Query: 594 ADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 180 ---------EKWLSGPEFTVAILGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFC 225
Query: 651 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
P +AL + + L G+ R+D + D GE ++EVNT PGMT S
Sbjct: 226 PAGLDADREQALQALVMKAWRV---LGCRGWGRVDVMQDSD-GEFYLLEVNTAPGMT-SH 280
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDL 735
L+ A + +P Q ++L+L
Sbjct: 281 SLVPMAARQAGMSFP-QLVVRILEL 304
>gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
gi|190359129|sp|B0S093.1|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
Length = 350
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 124/312 (39%), Gaps = 71/312 (22%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
+L + S++E I+ +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 DLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 465 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
K T+ LN + A VL N D KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKT--------------SKAVYVKPCN 174
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
G S GV R E+L KA++ N+F IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---KAIQ--------NAFQYDR----------RILVEEEIIGP 213
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ LTP P M + K + E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDSKTEMLTPFP---MDEKLELKARHLAEKVYKLMSLSGFSRVDMFVK--DNELWVNEI 301
Query: 701 NTVPGMTPSTVL 712
NTVPG+TP ++
Sbjct: 302 NTVPGLTPHSMF 313
>gi|345297870|ref|YP_004827228.1| D-alanine--D-alanine ligase [Enterobacter asburiae LF7a]
gi|345091807|gb|AEN63443.1| D-alanine--D-alanine ligase [Enterobacter asburiae LF7a]
Length = 306
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 135/312 (43%), Gaps = 69/312 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LL+ G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
RR + + D + ++L + VKP+R+G S G++++ A+DL+
Sbjct: 117 LTRRD---FEMGLSDSVNTRIAELGLPVI-VKPSREGSSVGMSKVDKAQDLS-------- 164
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
++ + A F +E+L +W
Sbjct: 165 -------SALALA------------------FQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P S + E
Sbjct: 183 LSGPEFTVAMLGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---SGLEAERE 234
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ + N L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 235 ADLQSLVLKAWNVLGCRGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLD 734
M Q ++LD
Sbjct: 292 MSFSQLVVRILD 303
>gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469]
gi|422806684|ref|ZP_16855115.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469]
gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
Length = 306
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
R + E L +V L L VKP+R+G S G++++
Sbjct: 117 ITRTEFEKGLSDEVVKQISAL-----GLPLIVKPSREGSSVGMSKV-------------- 157
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+ NS A + F DE+L +
Sbjct: 158 -----VAENSVENALKL--------------AFQHDDEVLV-----------------EK 181
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ P S + E
Sbjct: 182 WLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---SGLEAEQ 233
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
K ++ L +G+ RID ++ D+G+ ++E NT PGMT +++ A Q
Sbjct: 234 ESILKSLVQKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|424815008|ref|ZP_18240159.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227]
gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227]
Length = 309
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 61 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 119
Query: 486 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
R + E L +V L L VKP+R+G S G++++
Sbjct: 120 ITRTEFEKGLSDEVVKQISAL-----GLPLIVKPSREGSSVGMSKV-------------- 160
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+ NS A + F DE+L +
Sbjct: 161 -----VAENSVENALKL--------------AFQHDDEVLV-----------------EK 184
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ P S + E
Sbjct: 185 WLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---SGLEAEQ 236
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
K ++ L +G+ RID ++ D+G+ ++E NT PGMT +++ A Q
Sbjct: 237 ESILKSLVQKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAA--RQA 293
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 294 GMSFSQLVVRILEL 307
>gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
Length = 374
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 126/303 (41%), Gaps = 71/303 (23%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTINKDV- 487
+HG GEDGT+Q L E GVPYTG GV AS CMDK T L +G + D
Sbjct: 113 LHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYA 172
Query: 488 -RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
R +E + ++D + VKP+R G S GV+R+ E+ V A
Sbjct: 173 WRHRESAVPAEVLDF---------GLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVA---- 219
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNADRLMWKGNSRW 605
+R H P++++ V E+ + + + A R + G
Sbjct: 220 ---------ARRHD--------PKVIVEAGVVGAREVECAVLEGRDGAAPRTAFPGE--- 259
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA--SIMSTEALD 663
V +K++ + E K+ ++L+ P +++ D
Sbjct: 260 --------------------VVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICD 299
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+Q EL++ EG +R+D F + G +++ E+NT+PGMTP ++ P M
Sbjct: 300 YARQAFELVSG----EGLARVDFFYVEETGRLILNEINTMPGMTPFSLF--------PGM 347
Query: 724 YPH 726
+ H
Sbjct: 348 WEH 350
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP+RAGSS+GV+ +++ ++ + ++ D +V+VE + G E VL+
Sbjct: 191 VFVKPSRAGSSLGVSR----VEAWEEFEAAVVAARRHDPKVIVEAGVVGAREVECAVLEG 246
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G F G V +++ ++++ KY V+ P + P +V
Sbjct: 247 RDG----------AAPRTAFPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKR 296
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I + A F+ + AR+D +++ E G ++ +IN + GM
Sbjct: 297 ICDYARQAFELVSGEGLARVDFFYV----------------EETGRLILNEINTMPGMTP 340
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACS 245
S +G + +++ +I A S
Sbjct: 341 FSLFPGMWEHMGMPYQDLVTELIEIALS 368
>gi|149910629|ref|ZP_01899267.1| D-alanylalanine synthetase [Moritella sp. PE36]
gi|149806357|gb|EDM66332.1| D-alanylalanine synthetase [Moritella sp. PE36]
Length = 312
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 78/303 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ FIA+HG GEDG +Q LE G+PYTG V+ + MDK+ T
Sbjct: 58 QLGRDGFTHAFIALHGRGGEDGVMQGALEQLGIPYTGSRVLGAALAMDKIRTKQIWQ--- 114
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
G+ T V + T DI +L S + +KPA++G S G+A++
Sbjct: 115 SQGLPTALYRVVTPINFNTTIASDIIADLGSP-----VIIKPAKEGSSIGMAKV------ 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
H + E+ E + F +EIL
Sbjct: 164 ----------------------HNVAEL-----ETAVTAAFAYDNEILV----------- 185
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G ++P + +K + K+Q T L P P
Sbjct: 186 ------EQWIEGPEFTVAILGD-----EVLPVIQLKTPNTFYDYQAKYQSNTTEYLCPAP 234
Query: 654 ASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
+ D+ +Q+++ A +A+ EG+ R+DA ++ G+ ++EVNTVPGMT
Sbjct: 235 IT-------DEQRQQLQAYALKAFHAVAAEGWGRVDAMLDA-QGQFQLLEVNTVPGMTEK 286
Query: 710 TVL 712
+++
Sbjct: 287 SLV 289
>gi|188532904|ref|YP_001906701.1| D-alanine--D-alanine ligase [Erwinia tasmaniensis Et1/99]
gi|229485955|sp|B2VD93.1|DDL_ERWT9 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|188027946|emb|CAO95803.1| D-alanine-D-alanine ligase [Erwinia tasmaniensis Et1/99]
Length = 306
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 135/334 (40%), Gaps = 91/334 (27%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK---------- 465
++L +E FIA+HG GEDGTLQ +LE +PYTG GVMAS MDK
Sbjct: 48 MRLKEEGFDKAFIALHGRGGEDGTLQGVLEFLAIPYTGSGVMASAITMDKLRSKYLWQGC 107
Query: 466 ---VATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 521
V+ +ALN D G ++ + D L P L VKP+R+
Sbjct: 108 GLPVSPFVALNRAQMDAG---LDAQLMTSIDALGLP----------------LFVKPSRE 148
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S G++R+ A +L ++ E F D
Sbjct: 149 GSSVGISRVNQASELQAALQ---------------------------------EAFRFDD 175
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
E+L + + E TVGVIG ++PS+ ++ + + + K+
Sbjct: 176 EVLVEAFLSGP--------------EYTVGVIGT-----DILPSIRIQTASEFYDYDAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 701
P S +S + + ++ AL G+ R+D + D G+ ++EVN
Sbjct: 217 LSDETQYFCP---SGLSADQEAELRELTIAAWRALGCSGWGRVDVMMGAD-GQFYLLEVN 272
Query: 702 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
T PGMT +++ A Q M Q ++L+L
Sbjct: 273 TSPGMTSHSLVPMAA--NQAGMSFSQLVARILEL 304
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGGSEFTAIVLDV 97
+ VKP+R GSS+G++ ++ + + + E DD V+VE FL G E+T V+
Sbjct: 141 LFVKPSREGSSVGIS----RVNQASELQAALQEAFRFDDEVLVEAFLS-GPEYTVGVI-- 193
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G D P + + T E ++Y KYL + + Y P
Sbjct: 194 --GTDILPSIRIQTASEF--------------YDYDAKYL-SDETQYFCPSGLSADQEAE 236
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+RE ++ LG + R+D V ++ G ++N GM
Sbjct: 237 LRELTIAAWRALGCSGWGRVD---------VMMGAD--------GQFYLLEVNTSPGMTS 279
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A++ G S S ++ I+
Sbjct: 280 HSLVPMAANQAGMSFSQLVARIL 302
>gi|424797994|ref|ZP_18223536.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 696]
gi|423233715|emb|CCK05406.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 696]
Length = 306
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 136/330 (41%), Gaps = 87/330 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V RR D L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DTTGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|378768546|ref|YP_005197019.1| D-alanine--D-alanine ligase [Pantoea ananatis LMG 5342]
gi|386014667|ref|YP_005932944.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355]
gi|327392726|dbj|BAK10148.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355]
gi|365188032|emb|CCF10982.1| D-alanine-D-alanine ligase B DdlB [Pantoea ananatis LMG 5342]
Length = 305
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 133/320 (41%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
++L + VFIA+HG GEDGTLQ++LE +PYTG GVMAS MDK+ T L
Sbjct: 47 LELTAQGFEKVFIALHGRGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 106
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
L K V + +++ + S L L VKP+ +G S G++R+ D
Sbjct: 107 G----LPAGKFVWITREQMQSGLDATTEAAISALGLP-LFVKPSSEGSSVGISRVNQLSD 161
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L ALEE F D +L + + +
Sbjct: 162 LPA---ALEEA------------------------------FRHDDNVLVEAFLSGE--- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TVG++G ++P++ +K + + E K+ P
Sbjct: 186 -----------EYTVGILGD-----QILPAIKIKTASEFYDYEAKYISDDTQYFCPAG-- 227
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + +Q + AL G+ R+D + D G ++E NT PGMT +++
Sbjct: 228 -LSAEREAELQQLVWSAWRALGCSGWGRVDVMTD-DQGHFQLLEANTSPGMTSHSLVPMA 285
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A +Q + Q ++L+L
Sbjct: 286 A--KQAGLTFSQLVVRILEL 303
>gi|407647493|ref|YP_006811252.1| D-alanine--D-alanine ligase [Nocardia brasiliensis ATCC 700358]
gi|407310377|gb|AFU04278.1| D-alanine--D-alanine ligase [Nocardia brasiliensis ATCC 700358]
Length = 330
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 125/295 (42%), Gaps = 76/295 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF+A+HGG GE+GT+Q LL+ GVPYTG GV+AS MDK S L LA GV T +
Sbjct: 89 VFLALHGGTGENGTMQGLLDLAGVPYTGSGVLASAMAMDK-DVSKRLFRLA--GVPTPDW 145
Query: 486 DVRRKE--DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
++ E D L P++ VKP + G + G L +D Y +A+
Sbjct: 146 EMAADEFDDRLGWPVI----------------VKPNKQGSTVG---LTVVKDPAQYAEAV 186
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+RAH DE++ +
Sbjct: 187 R----------VARAH--------------------DDEVMVERFVPGR----------- 205
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E VGV+G L + + +I K+Q G + + P + + E D
Sbjct: 206 ---EFVVGVLGD----DPLAVGEIIPQGSEIFDYRSKYQVGGAVEIFP---AEIPAELAD 255
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + + AL+L +SR+D V+ G+V +E NT+PGMT +++L A +
Sbjct: 256 EMRAQAVRAHRALKLGAYSRVDFRVDA-AGDVWCLEANTLPGMTATSLLPQSAAA 309
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 93/226 (41%), Gaps = 44/226 (19%)
Query: 26 NW-FVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-ILEGIDDRVVVEL 82
+W ++ D G V+VKP + GS++G+TV V D + A+ + + DD V+VE
Sbjct: 144 DWEMAADEFDDRLGWPVIVKPNKQGSTVGLTV---VKDPAQYAEAVRVARAHDDEVMVER 200
Query: 83 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEV-ELQFQGSVDVREKDAIFNYRRKYLPTQQ 141
F+ G EF VL G D P V E+ QGS IF+YR KY
Sbjct: 201 FVP-GREFVVGVL----GDD-------PLAVGEIIPQGS-------EIFDYRSKYQVGGA 241
Query: 142 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 201
V P P + + +R A + L L ++R+D +
Sbjct: 242 VEIF-PAEIPAELADEMRAQAVRAHRALKLGAYSRVD-----------------FRVDAA 283
Query: 202 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 247
G + + N + GM TS L Q A+ G + + I HA +
Sbjct: 284 GDVWCLEANTLPGMTATSLLPQSAAAAGIDFAELCEQICLHALRKL 329
>gi|322421359|ref|YP_004200582.1| D-alanine--D-alanine ligase [Geobacter sp. M18]
gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
Length = 305
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 135/318 (42%), Gaps = 85/318 (26%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
G D+ +LP R LA+E FIA+HG GEDG++Q LLE +PYTG GV+
Sbjct: 44 VGIDVGRDLPQR--------LAEEQVERAFIALHGRFGEDGSVQGLLELMAIPYTGSGVL 95
Query: 458 ASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSKLQCKTLC 515
AS +DK+A A A G+ L + + R E+L L P+ +
Sbjct: 96 ASALAIDKIA---AKTMFAAAGLKLAPYQVLSRGEELKLANPL--------------PVV 138
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
VKP+R+G S GV+ ++R P +A + E
Sbjct: 139 VKPSREGSSVGVS------------------IVR-EPQQMEKA--------------LAE 165
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDI 634
F EIL + K E+ VG++ G+ M ++ + +
Sbjct: 166 AFRYDSEILIEAFIDGK--------------EVQVGILDGRA------MGAIEIVPKNEF 205
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
E K+ G ++ P +A+ K ++ AL + +SR+D VN + GE
Sbjct: 206 YDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAH---AALGCDCYSRVDFLVN-EAGE 261
Query: 695 VLIIEVNTVPGMTPSTVL 712
++EVNT+PGMT ++L
Sbjct: 262 CYLLEVNTLPGMTDLSLL 279
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 47/205 (22%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
VVVKP+R GSS+GV+ ++ ++ + + E D +++E F++ G E +LD
Sbjct: 137 VVVKPSREGSSVGVS----IVREPQQMEKALAEAFRYDSEILIEAFID-GKEVQVGILDG 191
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVIN 156
+ G++++ K+ ++Y KY T A H P R P V
Sbjct: 192 ------------------RAMGAIEIVPKNEFYDYEAKY--TDGGAEHILPARLPEQVYQ 231
Query: 157 SIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
++ + LG CD ++R+D FL E G ++N + GM
Sbjct: 232 AVLKEGEKAHAALG-CDCYSRVD--FL---------------VNEAGECYLLEVNTLPGM 273
Query: 216 EQTSFLFQQASKVGFSHSNILRTII 240
S L + A G +++ I+
Sbjct: 274 TDLSLLPEIARGSGIDFDQLVQRIL 298
>gi|429090572|ref|ZP_19153285.1| D-alanine--D-alanine ligase B [Cronobacter dublinensis 1210]
gi|426744922|emb|CCJ79398.1| D-alanine--D-alanine ligase B [Cronobacter dublinensis 1210]
Length = 306
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 137/328 (41%), Gaps = 83/328 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ L+ G+PYTG GVMAS MDK T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGTLDYLGLPYTGSGVMASAITMDKRRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V + RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVASWVALERR----------DIASGLSETLTARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILG-----DEILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P +AL Q + L A L +G+ R+D + D GE ++EVNT PGMT
Sbjct: 224 FCPSGIDADREQAL----QALVLEAWRVLGCQGWGRVDVMQDSD-GEFYLLEVNTAPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q M Q ++L+L
Sbjct: 279 SHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|429103528|ref|ZP_19165502.1| D-alanine--D-alanine ligase B [Cronobacter turicensis 564]
gi|426290177|emb|CCJ91615.1| D-alanine--D-alanine ligase B [Cronobacter turicensis 564]
Length = 306
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 136/328 (41%), Gaps = 83/328 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DIRGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
A+ L + ALE L FE E+L
Sbjct: 159 SAQAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILG-----DDILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P +AL Q + L A L G+ R+D + D GE ++EVNT PGMT
Sbjct: 224 FCPAGIDAGREQAL----QALVLEAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q M Q ++L+L
Sbjct: 279 SHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|429108887|ref|ZP_19170657.1| D-alanine--D-alanine ligase B [Cronobacter malonaticus 507]
gi|426310044|emb|CCJ96770.1| D-alanine--D-alanine ligase B [Cronobacter malonaticus 507]
Length = 306
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 138/332 (41%), Gaps = 87/332 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+ YTG GVMAS MDK+ T L L A+
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLSYTGSGVMASAITMDKLRTKL-LWQGAE 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DITGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILG-----DEILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737
MT +++ A Q M Q ++L+L +
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILELAN 306
>gi|392977598|ref|YP_006476186.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. dissolvens
SDM]
gi|392323531|gb|AFM58484.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. dissolvens
SDM]
Length = 306
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 136/318 (42%), Gaps = 81/318 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LL+ G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRK-----EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
RR+ +D + T I ++ + VKP+R+G S G++++ A+DL+ +
Sbjct: 117 LTRREFEMGLQDSVNTRIAEL---------GLPVIVKPSREGSSVGMSKVDKADDLSAAL 167
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
F +E+L
Sbjct: 168 AL---------------------------------AFQHDEEVLI--------------- 179
Query: 601 GNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+W+ E TV ++G+ ++PS+ ++ +G E K+ PA +
Sbjct: 180 --EKWLSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFC--PAGLE 230
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ D Q + L A N L G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 231 AEREAD--LQSLVLKAWNVLGCSGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA 287
Query: 717 LSEQPPMYPHQFFRKVLD 734
Q M Q ++LD
Sbjct: 288 --RQAGMSFSQLVVRILD 303
>gi|50122735|ref|YP_051902.1| D-alanine--D-alanine ligase [Pectobacterium atrosepticum SCRI1043]
gi|81643890|sp|Q6D0I5.1|DDL_ERWCT RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|49613261|emb|CAG76712.1| D-alanine--D-alanine ligase B [Pectobacterium atrosepticum
SCRI1043]
Length = 306
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 130/321 (40%), Gaps = 69/321 (21%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 50 LKEEGFTNVFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGL 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
+ D R+ D ++ + L L VKP+R+G S G++++ DL
Sbjct: 110 PVSPYVALDRRQYLDTEANTLLAQFTHL-----GLPLIVKPSREGSSVGMSKVNTLSDLP 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
ALEE F D++L
Sbjct: 165 A---ALEEA------------------------------FRHDDDVLV------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G ++PS+ ++ +G E K+ P
Sbjct: 180 -----EKWLSGPEYTVAILGD-----EVLPSIRIQPAGTFYDYEAKYLSDDTQYFCP--- 226
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
S +S E A+ G+ R+D ++ D+ ++EVNT PGMT +++
Sbjct: 227 SGLSDEQEQALAALAMAAYRAVDCSGWGRVDFMLDSDDA-FYLLEVNTSPGMTSHSLVPM 285
Query: 715 QALSEQPPMYPHQFFRKVLDL 735
A Q + Q K+L+L
Sbjct: 286 AA--RQRGLTFSQLVVKILEL 304
>gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
Length = 375
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 124/294 (42%), Gaps = 75/294 (25%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK---- 485
+HG GEDGT+Q L E GVPYTG GV AS MDK + L H G + + +
Sbjct: 114 LHGPYGEDGTIQGLCEMVGVPYTGCGVGASSNGMDKGCAKVLLEH----GGIPVGRYHVI 169
Query: 486 ---DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
D R + D + TPI+ W + VKPAR G S GV R+ +D V A
Sbjct: 170 SDFDWRHRADEVPTPILS-W--------GLPVFVKPARAGSSLGVTRVDSWQDFESAVVA 220
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+R H P++++ E V+
Sbjct: 221 -------------ARRHD--------PKVIV-EAAVQ----------------------G 236
Query: 603 SRWVEITVGVIGKCGSMHSLMP--SVTVKESGDILSLEEKFQGGTGINLTPP---PASIM 657
+R +E V + G+ G P V + + + + K+ + L P PA +
Sbjct: 237 AREIECAV-LEGRAGGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQIPAQIPAGV- 294
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ + +Q +++ EG SR+D F D GE+++ EVNT+PGMTP ++
Sbjct: 295 AAQIQSYARQAFQILGG----EGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSL 344
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 32/203 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP RAGSS+GVT +DS + + ++ D +V+VE ++G E VL+
Sbjct: 192 VFVKPARAGSSLGVTR----VDSWQDFESAVVAARRHDPKVIVEAAVQGAREIECAVLEG 247
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
+G P P EV + +++++ KY + V P + P V
Sbjct: 248 RAG--GAPRTTPPGEVVMV--------STPGMYDFQSKYFANEAVQLQIPAQIPAGVAAQ 297
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I+ A FQ LG +R+D +++P + G I+ ++N + GM
Sbjct: 298 IQSYARQAFQILGGEGLSRVDFFYVPDT----------------GEIILNEVNTMPGMTP 341
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S VG S+++++ +I
Sbjct: 342 YSLYPGMWENVGLSYTDLVTELI 364
>gi|410617119|ref|ZP_11328095.1| D-alanine-D-alanine ligase [Glaciecola polaris LMG 21857]
gi|410163388|dbj|GAC32233.1| D-alanine-D-alanine ligase [Glaciecola polaris LMG 21857]
Length = 316
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 72/314 (22%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD P +++E L ++ + V I +HG GEDG+LQ L+ +PYTG GV+
Sbjct: 52 GFD-----PAERNLHE---LVEQEFSRVLIMLHGRGGEDGSLQGALQQLNIPYTGTGVLG 103
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S CMDK+ + LG+ T N ++ K D T I L + + VKP
Sbjct: 104 SALCMDKIRSKQIWQ---SLGMPTANYEIADKRDFDGTTCDAIMARLGN-----LVMVKP 155
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
A++G S G+A++ A+ L V+ E + ++ E F+
Sbjct: 156 AQEGSSIGMAKVSNAQQLAAAVQHAFEY----------------------DDKVLLEQFI 193
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+ E TV ++ ++ +PS+++ D E
Sbjct: 194 QGS-------------------------EYTVSLLN-----NAALPSISMSTPRDFYDYE 223
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+Q + P S L K I+ +A+ G+ RID F+ G+ ++
Sbjct: 224 AKYQSNSTEYFCPSGLSQEQESTLAKLA--IDAF-DAVSGSGWGRID-FMQDMQGKFYLL 279
Query: 699 EVNTVPGMTPSTVL 712
E NTVPGMT +++
Sbjct: 280 EANTVPGMTQKSLV 293
>gi|429090078|ref|ZP_19152810.1| D-alanine--D-alanine ligase B [Cronobacter universalis NCTC 9529]
gi|426509881|emb|CCK17922.1| D-alanine--D-alanine ligase B [Cronobacter universalis NCTC 9529]
Length = 306
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 136/328 (41%), Gaps = 83/328 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E +FIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKIFIALHGRGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALDRR----------DIRGGLSESLSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
A+ L + ALE L FE E+L
Sbjct: 159 SAQAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P +AL Q + L A L G+ R+D + D GE ++EVNT PGMT
Sbjct: 224 FCPAGIDAEREQAL----QALVLEAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q M Q ++L+L
Sbjct: 279 SHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|340789121|ref|YP_004754586.1| D-alanine-D-alanine ligase B [Collimonas fungivorans Ter331]
gi|340554388|gb|AEK63763.1| D-alanine-D-alanine ligase B, affects cell division [Collimonas
fungivorans Ter331]
Length = 336
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 125/302 (41%), Gaps = 71/302 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-- 474
+LA E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS MDKV T
Sbjct: 65 ELAAEKFDRVFIALHGRYGEDGTLQGALEQLGIPYTGPGVMASAIGMDKVMTKRIWQSMG 124
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L + ++ +E+L + P V L +K +G + G++++
Sbjct: 125 LPTPRFIVLDSHSATREELRQVPDV----------LGLPLMLKAPHEGSTIGISKVVGYS 174
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
D++ + C F E ++ E FV E
Sbjct: 175 DMS---EGFALC------AKFD-------------EKVLAEEFVAGRE------------ 200
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+TV V+G G +P V ++ + K+ L P P
Sbjct: 201 -------------LTVPVLG-AGRRARTLPIVEIRAPEGNYDYQHKYFTDDTKYLCPAPL 246
Query: 655 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
EAL QRI+ +A NAL EG++R+D + + E ++E+NT PGMT +
Sbjct: 247 D----EAL---TQRIQALAVQAFNALGCEGWARVDFMLRSSDNEPYLLEINTSPGMTSHS 299
Query: 711 VL 712
++
Sbjct: 300 LV 301
>gi|295098596|emb|CBK87686.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 306
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 73/313 (23%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L ADL V
Sbjct: 59 FIALHGRGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKL-LWQGADLPVAPWVAL 117
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVKALE 544
RR+ ++ + + +++ L VKP+R+G S G++++ A DL
Sbjct: 118 TRREYEM------GLSDSVNTRIAALGLPVIVKPSREGSSVGMSKVDKAVDLA------- 164
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
++ + A F +E+L +
Sbjct: 165 --------DALALA------------------FQHDEEVLI-----------------EK 181
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 182 WLSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFCP---AGLEAER 233
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ + + N L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EAELQSLVLKAWNVLGCRGWGRIDVMLDGD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLD 734
M Q ++LD
Sbjct: 291 GMSFSQLVVRILD 303
>gi|377577166|ref|ZP_09806149.1| D-alanine--D-alanine ligase [Escherichia hermannii NBRC 105704]
gi|377541694|dbj|GAB51314.1| D-alanine--D-alanine ligase [Escherichia hermannii NBRC 105704]
Length = 306
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 121/298 (40%), Gaps = 67/298 (22%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK T L
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLELIGLPYTGSGVMASAITMDKQRTKLLWKGAG- 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L + V + + + L L VKP+R+G S G++++ AE L
Sbjct: 109 ---LPVAPWVALTRKAFAAGLDAATRQAIAALGLP-LIVKPSREGSSVGMSKVDSAEMLD 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
+ L FE +E+L
Sbjct: 165 AALA------------------------------LAFE---HDEEVLV------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G+ ++PS+ ++ +G E K+ P
Sbjct: 180 -----EKWLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDDTQYFCPSGL 229
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
AL+ + NAL G+ R+D ++ D GE ++EVNT PGMT +++
Sbjct: 230 EAHRESALNDL---VLQAWNALGCRGWGRVDVMLDSD-GEFYLLEVNTAPGMTSHSLV 283
>gi|354721642|ref|ZP_09035857.1| D-alanine--D-alanine ligase [Enterobacter mori LMG 25706]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 131/324 (40%), Gaps = 93/324 (28%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 480
VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 481 -------LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
L ++ V + L P++ VKP+R+G S G++++ A
Sbjct: 117 LTRTAFELGLSDSVNTRIAALGLPVI----------------VKPSREGSSVGMSKVDKA 160
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
EDL+ + F +E+L
Sbjct: 161 EDLSAALTL---------------------------------AFQHDEEVLI-------- 179
Query: 594 ADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 180 ---------EKWLSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFC 225
Query: 651 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
P S + E + + N L G+ RID ++ D G+ ++E NT PGMT +
Sbjct: 226 P---SGLEAEREADLQSLVLKAWNVLGCRGWGRIDVMLDGD-GQFYLLEANTSPGMTSHS 281
Query: 711 VLIHQALSEQPPMYPHQFFRKVLD 734
++ A Q M Q ++LD
Sbjct: 282 LVPMAA--RQAGMSFSQLVVRILD 303
>gi|412988142|emb|CCO17478.1| PREDICTED: hypothetical protein [Bathycoccus prasinos]
Length = 763
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 128/308 (41%), Gaps = 50/308 (16%)
Query: 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTINKDV------- 487
D TL+ L ++ G+ +TG + D+V S ALN+ + GV+ I K V
Sbjct: 407 DCTLRKLFQSAGITFTGTSAAFATRAADRVFLSSALNNSKVKIPGVMGIPKKVILQSALT 466
Query: 488 ------RRKEDLLKT-----PIVDIWHELTSKLQCKTLCVKPA-RDGCSTGVARLCCAED 535
K + L + V + E + +L C LC+K + S+ + R+ A+D
Sbjct: 467 VMAEEYVEKNEFLSSVSNIQRAVRTYAEASKELNCAELCIKSQFYEQNSSKITRIRSAKD 526
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L + EC R + N I EPFVET +++ +
Sbjct: 527 LETFAY---EC----------RRNRRFSSNNNIQNNFILEPFVETGKVV-----DFQFVQ 568
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV-----KESGDILSLEEKFQGGTGINLT 650
R SRW++I VG IG G M +L P+ V + G + + + G L
Sbjct: 569 REESSSESRWLKIYVGGIGPEGKMKALDPACPVGVPEGRRKGKTHAYLDCVKDGKTKKLL 628
Query: 651 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
I S K RIE + N + G + + FVNVD+GE+++ +V+ P MT
Sbjct: 629 FDEKKIESV-----VKPRIERVLNLTGISGVAMLRCFVNVDSGELIVEDVDHSPDMTERN 683
Query: 711 -VLIHQAL 717
HQAL
Sbjct: 684 GTFYHQAL 691
>gi|257465206|ref|ZP_05629577.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
gi|257450866|gb|EEV24909.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
Length = 303
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 124/300 (41%), Gaps = 67/300 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L N
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T +V R+ + + E+ +KL L VKPA +G S GV+++ AE L
Sbjct: 110 -VGLPTAAMEVVRRGQAVNS------DEIIAKLGL-PLFVKPASEGSSVGVSKVKTAEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L F+ V +E
Sbjct: 162 ---IPAIEEALK-------------------------FDSIVLVEE-------------- 179
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
N E +V V+ ++P+V + G+ K+ + P +
Sbjct: 180 -----NLAGAEYSVPVLD-----GEVLPAVQIIPDGEFYDYHAKYISDNTQYVVPALNAD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E KQ +++ G+SRID + G ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAKLVKQAYDVVG----CRGWSRIDVMED-GEGNFRLVEVNTCPGMTSHSIFPKSA 284
>gi|433463007|ref|ZP_20420575.1| D-alanine--D-alanine ligase [Halobacillus sp. BAB-2008]
gi|432188144|gb|ELK45362.1| D-alanine--D-alanine ligase [Halobacillus sp. BAB-2008]
Length = 314
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 132/303 (43%), Gaps = 65/303 (21%)
Query: 412 INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-- 469
INE + L + VFI +HG GEDG +Q +L+ +PY G GV+AS MDK +
Sbjct: 45 INEVLDL---DVDLVFIGLHGRFGEDGKIQGVLDMMELPYVGSGVLASALAMDKAKSKQL 101
Query: 470 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529
+LN L ++ DVR T I E+ + Q +KP ++G + G
Sbjct: 102 FSLNGLHT--AKSVAYDVRDS-----TLFHKIEEEIKKEFQL-PFVIKPNQEGSTLG--- 150
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
LT+ VK EE ++ G IE ++ E F+
Sbjct: 151 ------LTI-VK--EEKQIK----------GAIETAAKSDTDILVEDFI----------- 180
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
+ R E+TV VIGK G +L P + + D + K++ G ++
Sbjct: 181 ------------SGR--EVTVPVIGKKGKEQAL-PVIEIIPKNDYYDFDSKYKPGGSEHI 225
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P TE K +Q L L + +SR+D +N N E +I+EVNT+PGMTP+
Sbjct: 226 VPAKVEDALTE---KLQQHAVLAHQLLGCDVYSRVDFIINERN-EPVILEVNTLPGMTPT 281
Query: 710 TVL 712
++
Sbjct: 282 SLF 284
>gi|374295064|ref|YP_005045255.1| D-alanine--D-alanine ligase [Clostridium clariflavum DSM 19732]
gi|359824558|gb|AEV67331.1| D-alanine--D-alanine ligase [Clostridium clariflavum DSM 19732]
Length = 371
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/467 (23%), Positives = 181/467 (38%), Gaps = 113/467 (24%)
Query: 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 339
+ V VIFGG ++E +VS +S T++ N+ + D +
Sbjct: 5 KRVMVIFGGQSTEHEVSRLSATSIINNID------------------KNKFDVVMVGITK 46
Query: 340 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 399
R W LPY+ E++ + E I +N L+E + K
Sbjct: 47 EGR--W-LPYN----GPVEKIASGEWEEI--------------AINGLIESMPKSE---- 81
Query: 400 FDIADELPMRHSINEWIKLAKENQAT--VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
+I + + R + +E + + E + VF +HG GEDGT+Q L E GVPY G GV+
Sbjct: 82 -NIINAIVSRRASSEALTNSDERRTVDVVFPVLHGCKGEDGTIQGLFEMAGVPYVGCGVL 140
Query: 458 ASKTCMDKVATSLALNHL----ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT 513
S MDK+ + AD T RKE +K + + + K +
Sbjct: 141 GSALGMDKIFAKIMFEKAGIPQADYLYFT------RKE--IKEDVNSAANAIEQKFKYPV 192
Query: 514 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 573
+KP+ G S GV++ ++L ++AL + R ++
Sbjct: 193 F-IKPSNAGSSVGVSKAHNRKEL---IEALNLAA------KYDRK-------------IL 229
Query: 574 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 633
E F+ E+ GN + TVG ++P S +
Sbjct: 230 VEEFINGREV------------ECAVLGNDNPIASTVG---------EIIP------SNE 262
Query: 634 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 693
K+ G + P + E + K +Q L G SR+D FV+ ++G
Sbjct: 263 FYDYNAKYIDGKSKTVIPAN---LPAETISKIRQYAVKAFKILDCSGLSRVDFFVHKESG 319
Query: 694 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
EV I E+NT+PG T + ++ L E + + +++DL ER+
Sbjct: 320 EVYINEINTMPGFT--DISMYPMLWEASGISYSELIERLIDLAIERY 364
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 41/211 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
V +KP+ AGSS+GV+ A+ +I++L A D +++VE F+ G E VL
Sbjct: 192 VFIKPSNAGSSVGVSKAHNRKELIEALNLAA-----KYDRKILVEEFI-NGREVECAVLG 245
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ ++P+ + ++Y KY+ + P P I+
Sbjct: 246 NDNPIASTVGEIIPS---------------NEFYDYNAKYIDGKSKTV-IPANLPAETIS 289
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
IR+ A F+ L +R+D +F+ E G + +IN + G
Sbjct: 290 KIRQYAVKAFKILDCSGLSRVD-FFV---------------HKESGEVYINEINTMPGFT 333
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHACSRF 247
S G S+S ++ +I A R+
Sbjct: 334 DISMYPMLWEASGISYSELIERLIDLAIERY 364
>gi|339998150|ref|YP_004729033.1| D-alanine--D-alanine ligase [Salmonella bongori NCTC 12419]
gi|339511511|emb|CCC29214.1| D-alanine:D-alanine ligase B [Salmonella bongori NCTC 12419]
Length = 306
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 131/314 (41%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L +
Sbjct: 58 VFIALHGRGGEDGTLQGMLEQLGLPYTGSGVMASALSMDKLRSKLLWQGAG----LPVAP 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V + + D S L L VKP+R+G S G+ K +EE
Sbjct: 114 WVALTRAGFENGLSDDEKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ ++ S A F DEIL +W
Sbjct: 161 NALQ---SALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E+TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPELTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASREAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLHAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
Length = 374
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 130/304 (42%), Gaps = 73/304 (24%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTINKDV- 487
+HG GEDGT+Q L E GVPYTG GV AS CMDK T L +G + D
Sbjct: 113 LHGPYGEDGTIQGLCEMVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYA 172
Query: 488 -RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
R +E + ++D + VKP+R G S GV+R+ E+ V A
Sbjct: 173 WRHRESAVPAEVLDF---------GLPVFVKPSRAGSSLGVSRVEAWEEFEAAVVA---- 219
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
+R H P++++ V +R V
Sbjct: 220 ---------ARRHD--------PKVIVEAGVV-----------------------GAREV 239
Query: 607 EITVGVIGKCGSM-HSLMPS-VTVKESGDILSLEEKFQGGTGINLTPPPA--SIMSTEAL 662
E V + G+ G+ + +P V +K++ + E K+ ++L+ P +++
Sbjct: 240 ECAV-LEGRDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRIC 298
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
D +Q EL++ EG +R+D F + G +++ E+NT+PGMTP ++ P
Sbjct: 299 DYARQAFELVSG----EGLARVDFFYVEETGRLILNEINTMPGMTPFSLF--------PG 346
Query: 723 MYPH 726
M+ H
Sbjct: 347 MWEH 350
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 32/208 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP+RAGSS+GV+ +++ ++ + ++ D +V+VE + G E VL+
Sbjct: 191 VFVKPSRAGSSLGVS----RVEAWEEFEAAVVAARRHDPKVIVEAGVVGAREVECAVLEG 246
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G P +P EV + ++ ++++ KY V+ P + P +V
Sbjct: 247 RDG--AAPRTAIPGEVVM--------KQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKR 296
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I + A F+ + AR+D +++ E G ++ +IN + GM
Sbjct: 297 ICDYARQAFELVSGEGLARVDFFYV----------------EETGRLILNEINTMPGMTP 340
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACS 245
S +G + +++ +I A S
Sbjct: 341 FSLFPGMWEHMGMPYQDLVTELIEIALS 368
>gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
Length = 385
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 66/299 (22%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-------D 477
VF +HG GEDGT+Q LLE G+PY G GV AS CMDK T + L+
Sbjct: 110 AVFPVLHGPYGEDGTIQGLLEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGIQVAPGIT 169
Query: 478 LGVLTINKD---VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L + ++D V E LL+ VD + LQ L VKP+R G S GV ++ ++
Sbjct: 170 LDTRSYHRDSHFVADGESLLQA--VD-----RAGLQYP-LFVKPSRAGSSFGVTKVDFSQ 221
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
D ++ + L +FE + N +
Sbjct: 222 DKSLLMNRLSAA--------------------------VFE-------------AANHDW 242
Query: 595 DRLMWKG-NSRWVEITVGVIGKCGSM-HSLMPSVTVKESGD---ILSLEEKFQGGTGINL 649
L+ +G + R +E V + + GS+ + +P V ++ D + K+ ++
Sbjct: 243 RVLIEQGIDGREIECAV-LAARPGSLPETSLPGEVVLDAPDDDTFYDFDSKYMDSQASHV 301
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
P + + + L+K +Q A+ +G SR+D FV D G+VL+ E+NT+PG TP
Sbjct: 302 EVP--AHLPQKLLEKVRQTAGQAFLAVDGQGLSRVDTFVTAD-GQVLVNEINTMPGFTP 357
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 31/209 (14%)
Query: 40 VVVKPTRAGSSIGVT-VAYGVIDSL--KKAKGIILEGI--DDRVVVELFLEGGSEFTAIV 94
+ VKP+RAGSS GVT V + SL + + E D RV++E ++ G E V
Sbjct: 201 LFVKPSRAGSSFGVTKVDFSQDKSLLMNRLSAAVFEAANHDWRVLIEQGID-GREIECAV 259
Query: 95 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
L G P LP EV L D + D +++ KY+ +Q P P +
Sbjct: 260 LAARPG--SLPETSLPGEVVL------DAPDDDTFYDFDSKYMDSQASHVEVPAHLPQKL 311
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+ +R+ A F + +R+D + T G +L +IN + G
Sbjct: 312 LEKVRQTAGQAFLAVDGQGLSRVDTFV-----------------TADGQVLVNEINTMPG 354
Query: 215 MEQTSFLFQQASKVGFSHSNILRTIIGHA 243
S + +G S+ ++ +I A
Sbjct: 355 FTPISMYAKAWEAMGLSYRELISRLIDGA 383
>gi|300309680|ref|YP_003773772.1| D-alanine--D-alanine ligase [Herbaspirillum seropedicae SmR1]
gi|300072465|gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae
SmR1]
Length = 334
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 126/306 (41%), Gaps = 70/306 (22%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P S+ E L E VFIA+HG GEDGTLQ LE G+PYTGPGVM+S MDKV
Sbjct: 50 PAERSLGE---LQAEQFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKV 106
Query: 467 ATS-LALNH-LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
T + L+H L LT++ +E L L L +K +G +
Sbjct: 107 MTKRIWLSHGLPTPRFLTLDAQATTREQL----------RLVPDTLGLPLMLKAPHEGST 156
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G+A++ N +S ++ ++++ E F+
Sbjct: 157 IGIAKV----------------------NGYSDMQEGFDLCARYDKVVLAEEFI------ 188
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 644
R E+TV V+G GS +P + ++ + K+
Sbjct: 189 -------------------RGRELTVPVLG-TGSAARALPVIEIRAPEGNYDYQNKYFTD 228
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNG--EVLIIEVN 701
L P P E L + Q + + A NAL G+SR+D + +G E ++E+N
Sbjct: 229 DTKYLCPAPLD----EELTRHLQNLAVQAFNALGCRGWSRVDFMLREVDGKAEPYLLEIN 284
Query: 702 TVPGMT 707
T PGMT
Sbjct: 285 TSPGMT 290
>gi|429119984|ref|ZP_19180677.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 680]
gi|426325533|emb|CCK11414.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 680]
Length = 306
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 136/330 (41%), Gaps = 87/330 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V R DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERG----------DITGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|253681038|ref|ZP_04861841.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
gi|253562887|gb|EES92333.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
Length = 343
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 118/290 (40%), Gaps = 73/290 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVL 481
VF +HG GEDGT+Q L + +P GPGVM+S CMDKV T L + AD V+
Sbjct: 86 VFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMSSAVCMDKVYTKYVLENFGIKQADYVVV 145
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T + KED+L ++ +KL +KP+ G S G+
Sbjct: 146 TAHDYKTIKEDILT--------KIENKLGYDVF-IKPSNSGSSVGI-------------- 182
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
S+AH E+ E L F+ + + L
Sbjct: 183 --------------SKAHNREELEKGLSEALKFDRKILVETAL----------------- 211
Query: 602 NSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
N+R EI V V+G K + ++P + + E K+ L P + +
Sbjct: 212 NAR--EIEVAVLGNDEPKAATPGEIVP------ANEFYDYEAKYSNAESKLLLP---ANL 260
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ E L+K K I L G SR+D V+ + EV + E+NT+PG T
Sbjct: 261 TKEKLEKVKALAVRIYKMLDCAGMSRVDFLVDKETEEVYLNEINTIPGFT 310
>gi|340751163|ref|ZP_08687986.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
gi|229421687|gb|EEO36734.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
Length = 288
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 113/286 (39%), Gaps = 79/286 (27%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
+IA HGG GE+GT Q LL+ G PYTG G M S MDK T N + + K
Sbjct: 58 YIAFHGGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVG----IKTAKT 113
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
E++ P+V VKP+RDG S G+ E++ ++ALE
Sbjct: 114 YNCVEEIKDFPVV----------------VKPSRDGSSVGIYFCNTQEEVREALRALE-- 155
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
R +P +E M +G
Sbjct: 156 ---------GR-----------------KPLIEE-----------------MIQGE---- 168
Query: 607 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 666
E+TVGV+ G + + + E K+ G I+ P + A DK
Sbjct: 169 ELTVGVLNGEG-----LGVLRIIPKNKFYDYESKYAAGGSIHEYPAK---IDKAAYDKAM 220
Query: 667 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ I N + L+G SR D + +GEV +EVNT PGMT ++++
Sbjct: 221 ENAVKIHNVIGLKGISRSDFMLK--DGEVYFLEVNTCPGMTKTSLI 264
>gi|350560713|ref|ZP_08929553.1| D-alanine/D-alanine ligase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782981|gb|EGZ37264.1| D-alanine/D-alanine ligase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 314
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 129/316 (40%), Gaps = 82/316 (25%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P+ +I L FIA+HG GEDGT+Q L+ GVPYTG GV+ S M
Sbjct: 45 DATPIDLTIERARNLDLLGYDRAFIALHGTGGEDGTMQGCLDIAGVPYTGSGVLGSALGM 104
Query: 464 DKVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK+A A +L A +L+ + D+ D L P++ VKP+
Sbjct: 105 DKLACKRLWAGTNLPSAPYRLLSADSDLEAVADALGLPLI----------------VKPS 148
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R G S G+ R+ +L + E C R G +
Sbjct: 149 RGGSSLGLTRVQSTAELPAAYE--EAC----------RHAGAV----------------- 179
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILS 636
F+ Q W+ E TV ++G + +P + ++ G
Sbjct: 180 -----FAEQ----------------WIVGKEYTVAIVG-----NEPLPVIQIETPGSFYD 213
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
K++ T L PPP + + AL + + A+ +G+ R+D +V +GE
Sbjct: 214 YHAKYEADTTRYLCPPP---LDSAALIELQTLALSAFAAIDGQGWGRVDLLQDV-HGENY 269
Query: 697 IIEVNTVPGMTPSTVL 712
+IEVNTVPGMT +++
Sbjct: 270 LIEVNTVPGMTDHSLV 285
>gi|423138648|ref|ZP_17126286.1| D-ala D-ala ligase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379051202|gb|EHY69093.1| D-ala D-ala ligase [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 306
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 130/314 (41%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L++
Sbjct: 58 VFIALHGRGGEDGTLQGMLERLGLPYTGSGVMASALSMDKLRSKLLWQGAG----LSVAP 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V + + + S L L VKP+R+G S G+ K +EE
Sbjct: 114 WVALTRAGFEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
N+ +A + F DEIL +W
Sbjct: 161 -------NALQQALSL--------------AFQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|421082620|ref|ZP_15543503.1| D-alanine--D-alanine ligase 2 [Pectobacterium wasabiae CFBP 3304]
gi|401702857|gb|EJS93097.1| D-alanine--D-alanine ligase 2 [Pectobacterium wasabiae CFBP 3304]
Length = 306
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 135/326 (41%), Gaps = 77/326 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 49 KLKEEGFTRVFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ D R + ++ + L L VKP+R+G S G++++ +L
Sbjct: 109 LPVSPYVALDRRHYSETAANELLAKFTHL-----GLPLIVKPSREGSSVGMSKVNALSEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
ALEE F D++L
Sbjct: 164 PA---ALEEA------------------------------FRHDDDVLV----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G ++PS+ ++ +G E K+ L+
Sbjct: 180 ------EKWLSGPEYTVAILGD-----EVLPSIRIQPAGTFYDYEAKY-------LSDDT 221
Query: 654 ASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
+ D +Q + ++A A+ G+ R+D ++ D G ++EVNT PGMT
Sbjct: 222 QYFCPSGLPDDQEQALAVLAMAAYRAVDCSGWGRVDFMLDSD-GAFYLLEVNTSPGMTSH 280
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q + Q K+L+L
Sbjct: 281 SLVPMAA--RQRGLTFSQLVVKILEL 304
>gi|303234404|ref|ZP_07321043.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
BVS033A4]
gi|302494520|gb|EFL54287.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
BVS033A4]
Length = 350
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 124/312 (39%), Gaps = 71/312 (22%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
+L + S++E I+ +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 DLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 465 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
K T+ LN + A VL N + KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFEKT--------------SKAVYVKPCN 174
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
G S GV R E+L KA++ N+F IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---KAIQ--------NAFQYDR----------RILVEEEIIGP 213
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ LTP P M + K + E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDSKTEMLTPFP---MDEKLELKARHLAEKVYKLMSLSGFSRVDMFVK--DNELWVNEI 301
Query: 701 NTVPGMTPSTVL 712
NTVPG+TP ++
Sbjct: 302 NTVPGLTPHSMF 313
>gi|295100377|emb|CBK97922.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii L2-6]
Length = 366
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 134/323 (41%), Gaps = 59/323 (18%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
++ K + V +HG GEDGT+Q LLE G+PY G GV+AS CMDK N +
Sbjct: 97 QVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVA----NAMF 152
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
D + K + +++ + + +KL VKPA G S G+ + ++L
Sbjct: 153 DASGIPHTKWLSATRWEIESDPDGVCDGVIAKLGWPIF-VKPANAGSSVGITKAHDRDEL 211
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
++ + + N ++FE FV+ E+ + ++
Sbjct: 212 KAAIR--------------------LALAN--DRKVVFEAFVDGHEVECAVIGSDPAV-- 247
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
++R EI G + + ++K++ G + P +
Sbjct: 248 -----STRPGEILAG--------------------AEFYTYDDKYKNGVSQVVIP---AR 279
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E LD+ K + AL EG +R D FV D G VLI E+NT+PG TP + ++
Sbjct: 280 LPEEKLDEVKTYAAMAYTALGCEGLARCDFFVEKDTGRVLINEINTLPGFTP--ISMYPK 337
Query: 717 LSEQPPMYPHQFFRKVLDLGSER 739
L E + +++ L ER
Sbjct: 338 LMEHEGIPVPALIDRLIALALER 360
>gi|289209358|ref|YP_003461424.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
gi|288944989|gb|ADC72688.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
Length = 313
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 124/303 (40%), Gaps = 75/303 (24%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHL 475
+A E VFIA+HG GEDGTLQ L+ G+PYTG GV+ S MDK+A A +L
Sbjct: 57 MALEGYDRVFIALHGECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNL 116
Query: 476 --ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
A +LT D D L P++ VKPAR G S G+ R+
Sbjct: 117 PSAPYRLLTPGFDPEAVADALGLPLI----------------VKPARGGSSLGITRVDRV 160
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
DL P +F A V+ ++ T +
Sbjct: 161 ADL---------------PAAFEAAR------------------VQPGQVFAEQWITGR- 186
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
E TV V+G + +P + ++ + K++ L PPP
Sbjct: 187 -------------EFTVAVLG-----NEPLPVIEIRAASGFYDYHAKYEADDTGYLCPPP 228
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 713
+ + L+ I A AL+ G+ R+D + ++GE +IEVNT+PGMT +++
Sbjct: 229 -DLSRSAQLELQSLAIAAFA-ALEGCGWGRVD-ILQDEHGENFLIEVNTIPGMTGHSLVP 285
Query: 714 HQA 716
A
Sbjct: 286 KAA 288
>gi|329298861|ref|ZP_08256197.1| D-alanine--D-alanine ligase [Plautia stali symbiont]
Length = 306
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 133/320 (41%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ A FIA+HG GEDGTLQ+LLE +PYTG GVMAS MDK+ + L
Sbjct: 48 LDLWQQGFAKAFIALHGRGGEDGTLQALLEFLQLPYTGSGVMASAITMDKLRSKLLWQGR 107
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
L K V + + D + + L VKP+ +G S G++R+ AE
Sbjct: 108 G----LPAGKFVWLTRQQYEQGL-DASAQASIAALGLPLFVKPSCEGSSVGISRVNQAEA 162
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L ++ E F D++L + +
Sbjct: 163 LPAALQ---------------------------------EAFRHDDDVLVEAFLSG---- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TVG++G ++PS+ ++ + + E K+ P S
Sbjct: 186 ----------AEYTVGIVGD-----EILPSIRIQTASEFYDYEAKYISDDTQYFCP---S 227
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + + + AL G+ R+D V+ D G ++EVNT PGMT S L+
Sbjct: 228 GLSAEKEAELQTLVLAAWRALGCSGWGRVDVMVDGD-GNFQLLEVNTSPGMT-SHSLVPM 285
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A + +P Q ++L+L
Sbjct: 286 AAKQAGYSFP-QLVARILEL 304
>gi|167854933|ref|ZP_02477708.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
gi|219870393|ref|YP_002474768.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
gi|254767730|sp|B8F3B8.1|DDL_HAEPS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|167853890|gb|EDS25129.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
gi|219690597|gb|ACL31820.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
Length = 303
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 124/300 (41%), Gaps = 67/300 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L N
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T +V R+ + + E+ +KL L VKPA +G S GV+++ AE L
Sbjct: 110 -VGLPTAAMEVVRRGQAVNS------DEIIAKLGL-PLFVKPASEGSSVGVSKVKTAEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L + D I+ +
Sbjct: 162 ---LPAIEEAL-------------------------------KYDSIVLVEE-------- 179
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
N E +V V+ ++P+V + G+ K+ + P +
Sbjct: 180 -----NLAGAEYSVPVLD-----GEVLPAVQIIPDGEFYDYHAKYISDNTQYVVPALNAD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E KQ +++ G+SRID + G ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAKLVKQAYDVVG----CRGWSRIDVMED-GEGNFRLVEVNTCPGMTSHSIFPKSA 284
>gi|302379949|ref|ZP_07268428.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
ACS-171-V-Col3]
gi|302312175|gb|EFK94177.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
ACS-171-V-Col3]
Length = 350
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 137/342 (40%), Gaps = 76/342 (22%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
+L + S+++ I +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 DLSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 465 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
K T+ LN + A VL N D KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKT--------------SKAVYVKPCN 174
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
G S GV R E+L KA++ N+F IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---KAIQ--------NAFQYDR----------RILVEEEIIGP 213
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ LTP P M + K + E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDSKTEMLTPFP---MDEKLELKARHLAEKVYKLMSLSGFSRVDMFVK--DNELWVNEI 301
Query: 701 NTVPGMTPSTV--LIHQALSEQPPMYPHQFFRKVLDLGSERF 740
NTVPG+TP ++ ++ + ++ M + F ++DL E +
Sbjct: 302 NTVPGLTPHSMFPVLWKCTND---MSVSEVFDNLIDLAVEEY 340
>gi|260596517|ref|YP_003209088.1| D-alanine--D-alanine ligase [Cronobacter turicensis z3032]
gi|260215694|emb|CBA28033.1| D-alanine--D-alanine ligase B [Cronobacter turicensis z3032]
Length = 326
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 135/328 (41%), Gaps = 83/328 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T L L A
Sbjct: 70 LKEEGFDKVFIALHGRGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKL-LWQGAG 128
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V R DI L+ L + + VKP+R+G S G++++
Sbjct: 129 LPVAPWVALERH----------DIRGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 178
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
A+ L + ALE L FE E+L
Sbjct: 179 SAQAL---LPALE---------------------------LAFE---HDSEVLV------ 199
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 200 -----------EKWLSGPEFTVAILG-----DDILPSIRIQPAGVFYDYEAKYLSDETQY 243
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P +AL Q + L A L G+ R+D + D GE ++EVNT PGMT
Sbjct: 244 FCPAGIDAGREQAL----QALVLEAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPGMT 298
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q M Q ++L+L
Sbjct: 299 SHSLVPMAA--RQAGMSFSQLVVRILEL 324
>gi|240949725|ref|ZP_04754057.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
gi|240295757|gb|EER46444.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
Length = 303
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 124/300 (41%), Gaps = 67/300 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L N
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T +V R+ + + E+ +KL L VKPA +G S GV+++ AE L
Sbjct: 110 -VGLPTAAMEVVRRGQAVNS------DEIIAKLGL-PLFVKPASEGSSVGVSKVKTAEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L + D I+ +
Sbjct: 162 ---LPAIEEAL-------------------------------KYDSIVLVEE-------- 179
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
N E +V V+ ++P+V + G+ K+ + P +
Sbjct: 180 -----NLAGAEYSVPVLD-----GEVLPAVQIIPDGEFYDYHAKYISDNTQYVVPALNAD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E KQ +++ G+SRID + G ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAKLVKQAYDVVG----CRGWSRIDVMED-GEGNFRLVEVNTCPGMTSHSIFPKSA 284
>gi|419956653|ref|ZP_14472720.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
GS1]
gi|388608410|gb|EIM37613.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
GS1]
Length = 306
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 134/313 (42%), Gaps = 73/313 (23%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 59 FIALHGRGGEDGTLQGLLELIGIPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVAL 117
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVKALE 544
RR+ +L + + +++ L VKP+R+G S G++++ A DL
Sbjct: 118 TRREYEL------GLSDSVNTRIAALGLPVIVKPSREGSSVGMSKVDKAVDLA------- 164
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
++ + A F +E+L +
Sbjct: 165 --------DALALA------------------FQHDEEVLI-----------------EK 181
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 182 WLSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFCP---AGLEAER 233
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ + + N L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EAELQSLVLKAWNVLGCRGWGRIDVMLDGD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLD 734
M Q ++LD
Sbjct: 291 GMSFSQLVVRILD 303
>gi|154509346|ref|ZP_02044988.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC
17982]
gi|153798980|gb|EDN81400.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
odontolyticus ATCC 17982]
Length = 378
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 119/286 (41%), Gaps = 60/286 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q L E GV Y G GV +S MDK T L A + V
Sbjct: 116 VFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAA-AGIDVGQWEL 174
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R+ D T +D L + VKP R G S G++R+ C EDL V +K
Sbjct: 175 VTARQWDADSTACMDRIERLGFP-----VFVKPCRAGSSVGISRVTCREDLPVAIK---- 225
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
E N P I++ E S +
Sbjct: 226 -----------------EAANHDPRIIV--------EASISGR----------------- 243
Query: 606 VEITVGVIGKCGSMHS---LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
E+ GV+G S + + V E G+ E K+ + L+ P + ++ E
Sbjct: 244 -EVECGVLGSRSDWRSGTAPLGEIVVPE-GEFYDYEHKYVDDV-VGLSCP--ADVAPEYA 298
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
D+ ++ +AL+ EG +R+D F++ + V+I EVNT+PG TP
Sbjct: 299 DRIRETAWRAFDALECEGLARVDFFLDEASDTVIINEVNTMPGFTP 344
>gi|297571651|ref|YP_003697425.1| D-alanine--D-alanine ligase [Arcanobacterium haemolyticum DSM
20595]
gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
Length = 372
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 138/346 (39%), Gaps = 69/346 (19%)
Query: 406 LPMRHSINEWIKLAKENQA---------TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGV 456
LP ++ +EN + VF +HG GEDGT+Q +LE GVPY G GV
Sbjct: 79 LPAGDGTQSLVRYDRENASDLALLGNVDVVFPLLHGPFGEDGTIQGMLEMAGVPYVGCGV 138
Query: 457 MASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516
AS MDK + L + R+ D + D+ +K+ + V
Sbjct: 139 FASAAGMDKHYMKVVLEAAGLPVAPYVVATARKWRDERDQVLADV-----AKMSFP-VYV 192
Query: 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576
KPAR G S G+ R+ ED+ V A + I +P
Sbjct: 193 KPARAGSSLGITRVARIEDVPAAVAAAQ----------------------------IHDP 224
Query: 577 FVETDEILFSSQSTNKNADRLMWKG-NSRWVEITV-GVIGKCGSMHSLMPSVTVKESGD- 633
V L+ +G N R +E V G G S++ V V D
Sbjct: 225 KV------------------LIEQGVNGREIECAVLGGRGDTTPRASVVGEVLVNLPEDG 266
Query: 634 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 693
E K+ G+ ++ P + + E +K + + +A EG SR+D F+ + G
Sbjct: 267 FYDFEHKYLDTDGLTMSIP--ANVPEEISEKIRAQAIATFDAFGCEGMSRVDFFLTPE-G 323
Query: 694 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
E +IE+NT+PG TP + ++ L E + Q +++ L ER
Sbjct: 324 ETFVIELNTIPGFTPFS--MYPVLWENTGLPYSQLLDELIALALER 367
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 74/207 (35%), Gaps = 29/207 (14%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V VKP RAGSS+G+T + D + D +V++E + G E VL G
Sbjct: 190 VYVKPARAGSSLGITRVARIEDVPAAVAAAQIH--DPKVLIEQGVN-GREIECAVL--GG 244
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
D P + EV + +D +++ KYL T + P P + IR
Sbjct: 245 RGDTTPRASVVGEVLVNLP-------EDGFYDFEHKYLDTDGLTMSIPANVPEEISEKIR 297
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A F G +R+D + P G ++N I G S
Sbjct: 298 AQAIATFDAFGCEGMSRVDFFLTPE-----------------GETFVIELNTIPGFTPFS 340
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
G +S +L +I A R
Sbjct: 341 MYPVLWENTGLPYSQLLDELIALALER 367
>gi|429114005|ref|ZP_19174923.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 701]
gi|426317134|emb|CCK01036.1| D-alanine--D-alanine ligase B [Cronobacter sakazakii 701]
Length = 306
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 135/330 (40%), Gaps = 87/330 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG G AS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLPYTGSGYRASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V RR DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERR----------DIRGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILGD-----EILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
MT +++ A Q M Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|415949215|ref|ZP_11556848.1| D-alanine--D-alanine ligase [Herbaspirillum frisingense GSF30]
gi|407757776|gb|EKF67699.1| D-alanine--D-alanine ligase [Herbaspirillum frisingense GSF30]
Length = 334
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 127/309 (41%), Gaps = 67/309 (21%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P ++ +L E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS M
Sbjct: 44 DAHPFDPAVRSLGELQAEKFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAM 103
Query: 464 DKVATS-LALNH-LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 521
DKV T + L+H L LT++ +E L P EL L +K +
Sbjct: 104 DKVMTKRIWLSHGLPTPRFLTLDAKATNREQLRLVP-----DELGLPLM-----LKAPHE 153
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G + G+A++ N +S ++ +++ E F+
Sbjct: 154 GSTIGIAKV----------------------NGYSDMQEGFDLCARYDSVVLAEEFI--- 188
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
R E+TV V+G G +P + ++ + K+
Sbjct: 189 ----------------------RGRELTVPVLG-TGREARALPVIEIRAPEGNYDYQNKY 225
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNG--EVLII 698
L P P E L + + + + A NAL G+SR+D + +G E ++
Sbjct: 226 FTDDTKYLCPAPLD----EELTRHLRDLAVQAFNALGCRGWSRVDFMLRETDGKAEPYLL 281
Query: 699 EVNTVPGMT 707
E+NT PGMT
Sbjct: 282 EINTSPGMT 290
>gi|152980554|ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille]
gi|167012327|sp|A6T2F6.1|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|151280631|gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille]
Length = 320
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 122/309 (39%), Gaps = 69/309 (22%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + +LA E VFIA+HG GEDG+LQ LE G+PYTGPGVMAS M
Sbjct: 39 DAHPFDPAERSLAELAAEKFDRVFIALHGRFGEDGSLQGALEQLGIPYTGPGVMASAIAM 98
Query: 464 DKVATS-LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
DKV T + L+H GV T E + I E L +K +G
Sbjct: 99 DKVITKRVCLSH----GVPTPKFTALEVEATTAEQLQAIAAEFGMPLM-----LKAPHEG 149
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
+ G+A++ AE + F+ + D+
Sbjct: 150 STIGIAKVETAEGMQAG----------------------------------FDLCAKYDD 175
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
++ Q KG E+TV V+G G +P V + E K+
Sbjct: 176 VVLVEQ---------FVKGR----ELTVPVLGS-GRNARALPIVEIIAPQGNYDYEHKYF 221
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLII 698
L P P T +R++ +A NA+ G++R+D V + E ++
Sbjct: 222 SDDTQYLCPAPFDAAFT-------KRVQALAVSAFNAVGCTGWARVDFLVRESDNEPFLL 274
Query: 699 EVNTVPGMT 707
E+NT PGMT
Sbjct: 275 EINTSPGMT 283
>gi|421120567|ref|ZP_15580878.1| D-alanine--D-alanine ligase [Leptospira interrogans str. Brem 329]
gi|410346681|gb|EKO97651.1| D-alanine--D-alanine ligase [Leptospira interrogans str. Brem 329]
Length = 351
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDVDIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V N E I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NEEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|292489355|ref|YP_003532242.1| D-alanine--D-alanine ligase [Erwinia amylovora CFBP1430]
gi|292898421|ref|YP_003537790.1| D-alanine--D-alanine ligase [Erwinia amylovora ATCC 49946]
gi|428786320|ref|ZP_19003800.1| D-alanine-D-alanine ligase [Erwinia amylovora ACW56400]
gi|291198269|emb|CBJ45375.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946]
gi|291554789|emb|CBA22610.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430]
gi|426275166|gb|EKV52904.1| D-alanine-D-alanine ligase [Erwinia amylovora ACW56400]
Length = 306
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 138/333 (41%), Gaps = 91/333 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK----------- 465
+L +E FIA+HG GEDGTLQ +LE +PYTG GVMAS MDK
Sbjct: 49 RLKEEGFEKAFIALHGRGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCG 108
Query: 466 --VATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
V+ +AL D G ++ V D L P L VKP+R+G
Sbjct: 109 LPVSPFVALTRAQMDAG---LDAQVMASIDALGLP----------------LFVKPSREG 149
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G++R+ A +L ALEE +F H E+L+ E F+
Sbjct: 150 SSVGISRVNQASELQA---ALEE--------AFRFDH----------EVLV-EAFLSGP- 186
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
E TVGV+G ++PS+ ++ + + + K+
Sbjct: 187 ------------------------EYTVGVLGT-----DILPSIRIQTASEFYDYDAKYF 217
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
P S +S + + ++ NAL G+ R+D + D G ++EVNT
Sbjct: 218 SDETQYFCP---SGLSADQEAELRELTISAWNALGCSGWGRVDVMMGGD-GRFYLLEVNT 273
Query: 703 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
PGMT +++ A +Q M Q ++L+L
Sbjct: 274 SPGMTSHSLVPMAA--KQAGMSFSQLVARILEL 304
>gi|238893072|ref|YP_002917806.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238545388|dbj|BAH61739.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 306
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 139/335 (41%), Gaps = 95/335 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K+ FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L A
Sbjct: 49 QLKKQGFKKAFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKW-LWQGA 107
Query: 477 DLGV-----LT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V LT ++ DV ++ L P++ +KP+R+G S
Sbjct: 108 GLPVAPWVALTRAQFAAGLSTDVEQQIAALGLPVI----------------IKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ + DL ++ + A F DE+L
Sbjct: 152 VGMSKVSESCDLA---------------SALALA------------------FQHDDEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 179 V-----------------EKWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
P A + Q + L A N L +G+ RID ++ D G+ ++E
Sbjct: 217 LSDETQYFCPG----FKDPARESAIQNLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEA 271
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
NT PGMT +++ A Q M Q ++LDL
Sbjct: 272 NTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|330012005|ref|ZP_08307222.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
gi|378976972|ref|YP_005225113.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033155|ref|YP_005953068.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae KCTC 2242]
gi|419761819|ref|ZP_14288070.1| D-ala D-ala ligase protein [Klebsiella pneumoniae subsp. pneumoniae
DSM 30104]
gi|419973464|ref|ZP_14488888.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980129|ref|ZP_14495416.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985000|ref|ZP_14500143.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419990084|ref|ZP_14505057.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419995964|ref|ZP_14510768.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003113|ref|ZP_14517761.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420007838|ref|ZP_14522330.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013809|ref|ZP_14528118.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019120|ref|ZP_14533314.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024612|ref|ZP_14538624.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031605|ref|ZP_14545425.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420037951|ref|ZP_14551602.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420042163|ref|ZP_14555657.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048387|ref|ZP_14561701.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420053571|ref|ZP_14566748.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420059443|ref|ZP_14572450.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420065205|ref|ZP_14578012.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073135|ref|ZP_14585765.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076007|ref|ZP_14588481.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420084594|ref|ZP_14596848.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909975|ref|ZP_16339770.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421919320|ref|ZP_16348823.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424828957|ref|ZP_18253685.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|425079861|ref|ZP_18482958.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425089979|ref|ZP_18493064.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428151103|ref|ZP_18998848.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428931523|ref|ZP_19005118.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae JHCK1]
gi|428938447|ref|ZP_19011574.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae VA360]
gi|449051310|ref|ZP_21731909.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae hvKP1]
gi|328533994|gb|EGF60646.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
gi|339760283|gb|AEJ96503.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae KCTC 2242]
gi|364516383|gb|AEW59511.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397347045|gb|EJJ40155.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397348103|gb|EJJ41205.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397352984|gb|EJJ46061.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397366085|gb|EJJ58704.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397367699|gb|EJJ60308.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397370420|gb|EJJ63003.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397379131|gb|EJJ71329.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397383924|gb|EJJ76051.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389286|gb|EJJ81228.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397398549|gb|EJJ90211.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397399752|gb|EJJ91402.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397404908|gb|EJJ96394.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397415575|gb|EJK06760.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397416812|gb|EJK07982.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397423799|gb|EJK14716.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397432292|gb|EJK22956.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397435441|gb|EJK26056.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397438276|gb|EJK28788.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447969|gb|EJK38154.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450056|gb|EJK40172.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|397745360|gb|EJK92567.1| D-ala D-ala ligase protein [Klebsiella pneumoniae subsp. pneumoniae
DSM 30104]
gi|405606786|gb|EKB79756.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405614543|gb|EKB87242.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|410116105|emb|CCM82395.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410118351|emb|CCM91448.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414706373|emb|CCN28077.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426305675|gb|EKV67792.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae VA360]
gi|426308022|gb|EKV70093.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae JHCK1]
gi|427538922|emb|CCM94986.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448876298|gb|EMB11292.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae hvKP1]
Length = 306
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 139/335 (41%), Gaps = 95/335 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K+ FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L A
Sbjct: 49 QLKKQGFKKAFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKW-LWQGA 107
Query: 477 DLGV-----LT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V LT ++ DV ++ L P++ +KP+R+G S
Sbjct: 108 GLPVAPWVALTRAQFAAGLSTDVEQQIAALGLPVI----------------IKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ + DL ++ + A F DE+L
Sbjct: 152 VGMSKVSESCDLA---------------SALALA------------------FQHDDEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 179 V-----------------EKWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
P A + Q + L A N L +G+ RID ++ D G+ ++E
Sbjct: 217 LSDETQYFCPG----FEDPARESAIQNLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEA 271
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
NT PGMT +++ A Q M Q ++LDL
Sbjct: 272 NTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|422008673|ref|ZP_16355657.1| D-alanine--D-alanine ligase [Providencia rettgeri Dmel1]
gi|414095146|gb|EKT56809.1| D-alanine--D-alanine ligase [Providencia rettgeri Dmel1]
Length = 367
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 109/462 (23%), Positives = 173/462 (37%), Gaps = 116/462 (25%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG ++E +VSL S N+ +N N +V CLL + +
Sbjct: 6 VGVIFGGRSTEHEVSLQSAKNI-INGLDRNKFDV--CLLGINKEGQ-------------- 48
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
W + + L + +P R A + R+ LV G K F +
Sbjct: 49 ---WH-------EYNESDYL---LHGDDPSRIALNTPKRSIA---LVPG-KTREQFISLE 91
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
LP +F VHG +GEDG+LQ LL +P+ GPGV+ S
Sbjct: 92 DTKPLPQID--------------VIFPIVHGNLGEDGSLQGLLRMANLPFVGPGVLGSSA 137
Query: 462 CMDKVATSLALNHLADLGV---LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
CMDK T L A L + +T+ K+ R + E T L L +KP
Sbjct: 138 CMDKDVTKRLLRD-AGLNIAPFITVFKNERATTEF----------EATVALLGLPLFIKP 186
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
A G S G++++ + E + F+
Sbjct: 187 ANQGSSVGISKVSTKSEF---------------------------------ETALDFAFL 213
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
++L S + EI V+G + S P + + +
Sbjct: 214 FDTKVLIESAVKGR--------------EIECAVLGNEAPLAS--PCGEIVLHDNFYAYH 257
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ G ++ P + DK ++ AL G SR+D F+ +N +V+I
Sbjct: 258 TKYIDENGASVVAPAQ--LDEAVSDKIREIALSAYRALNCYGMSRVDVFL-TENNDVVIN 314
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
E+NT+PG T + ++ L +Q M Q ++++LG E+F
Sbjct: 315 EINTLPGFT--NISMYPKLWQQGGMTYQQLISRLIELGIEKF 354
>gi|297587783|ref|ZP_06946427.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
gi|297574472|gb|EFH93192.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
Length = 350
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 124/312 (39%), Gaps = 71/312 (22%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
EL + S+++ I +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 ELSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 465 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
K T+ LN + A VL N + KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFDKT--------------SKAVYVKPCN 174
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
G S GV R E+L +A++ L + R IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---QAIQNAFL------YDR------------RILVEEEIIGP 213
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ LTP P M + K ++ E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDAKTEMLTPFP---MDEQLELKARRLAEKVYKIMSLSGFSRVDMFVR--DNELWVNEI 301
Query: 701 NTVPGMTPSTVL 712
NTVPG+TP ++
Sbjct: 302 NTVPGLTPHSMF 313
>gi|312173520|emb|CBX81774.1| D-alanine-D-alanine ligase [Erwinia amylovora ATCC BAA-2158]
Length = 306
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 136/319 (42%), Gaps = 63/319 (19%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L +E FIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ + L
Sbjct: 49 RLKEEGFEKAFIALHGRGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKY-LWQGC 107
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L V R + D +D + L VKP+R+G S G++R+ A +L
Sbjct: 108 GLPVSPFVALTRAQMD----AGLDAQVMASIAALGLPLFVKPSREGSSVGISRVNQASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
ALEE +F H E+L+ E F+
Sbjct: 164 QA---ALEE--------AFRFDH----------EVLV-EAFLSGP--------------- 186
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E TVGV+G ++PS+ ++ + + + K+ P S
Sbjct: 187 ----------EYTVGVLGT-----DILPSIRIQTASEFYDYDAKYFSDETQYFCP---SG 228
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+S + + ++ NAL G+ R+D + D G ++EVNT PGMT +++ A
Sbjct: 229 LSADQEAELRELTISAWNALGCSGWGRVDVMMGGD-GRFYLLEVNTSPGMTSHSLVPMAA 287
Query: 717 LSEQPPMYPHQFFRKVLDL 735
+Q M Q ++L+L
Sbjct: 288 --KQAGMSFSQLVARILEL 304
>gi|167747289|ref|ZP_02419416.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662]
gi|317471032|ref|ZP_07930407.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
gi|167653267|gb|EDR97396.1| D-ala D-ala ligase N-terminal domain protein [Anaerostipes caccae
DSM 14662]
gi|316901473|gb|EFV23412.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
Length = 350
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 128/319 (40%), Gaps = 69/319 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F +HG GEDGT+Q L E +PY G GV+AS MDKV T + + DLG+
Sbjct: 96 IFPVLHGLNGEDGTIQGLFEMAQIPYVGCGVLASAVSMDKVYTKIIVE---DLGIRQAQF 152
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R+ DL T + D +KL + VKP+R G S GV++ AED KAL +
Sbjct: 153 VHIRRSDL--TQMEDALDRAEAKLSY-PMFVKPSRAGSSVGVSK---AEDREALSKALSK 206
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
IL+ E V R
Sbjct: 207 A------------------AEHDRNILVEETIV------------------------GRE 224
Query: 606 VEITV--GVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
VE V G K + ++ + D + K+ L PP M E +
Sbjct: 225 VECAVLGGKEIKASGVGEILAA------ADFYDYDAKYNNQESKTLIDPP---MPEETRE 275
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV--LIHQALSEQP 721
+ ++ I A+ G SR+D F+ +NGEV+ E+NT+PG T ++ ++ A +
Sbjct: 276 EIRKSAAEIFKAVDGYGLSRVDFFI-AENGEVVFNEINTLPGFTSISMYPMLWAAQGIKT 334
Query: 722 PMYPHQFFRKVLDLGSERF 740
P + R L ERF
Sbjct: 335 PALADELIR----LAEERF 349
>gi|375258982|ref|YP_005018152.1| D-alanine--D-alanine ligase [Klebsiella oxytoca KCTC 1686]
gi|397655955|ref|YP_006496657.1| D-alanine--D-alanine ligase [Klebsiella oxytoca E718]
gi|365908460|gb|AEX03913.1| D-alanine--D-alanine ligase [Klebsiella oxytoca KCTC 1686]
gi|394344593|gb|AFN30714.1| D-alanine-D-alanine ligase [Klebsiella oxytoca E718]
Length = 306
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 135/319 (42%), Gaps = 81/319 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R++ + V+ + S L L VKP+R+G S G++++ E
Sbjct: 117 LTRKQFTAGLSAEVE---QQISALGLP-LIVKPSREGSSVGMSKVS------------ES 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
C L+ N+ + A F DE+L +W
Sbjct: 161 CALQ---NALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P L
Sbjct: 183 LSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKYLSDETQYFCP---------GL 228
Query: 663 DKCKQRIELIA------NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ + E+ A ++L G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 229 EDSAREAEMQALVQKAWDSLGCYGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA 287
Query: 717 LSEQPPMYPHQFFRKVLDL 735
Q M Q ++LDL
Sbjct: 288 --RQAGMSFSQLVVRILDL 304
>gi|238784567|ref|ZP_04628574.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
gi|238714533|gb|EEQ06538.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
Length = 289
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 126/301 (41%), Gaps = 71/301 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L L
Sbjct: 32 QLKAQGFDKVFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKLVWQAL- 90
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLCCAE 534
DL + R++ + L + EL +++ L VKP+ +G S G++++ A
Sbjct: 91 DLPISPYVALNRQQFETLSS------EELAARVAKLGLPLIVKPSHEGSSVGMSKVDHAN 144
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+L + + E F ++L
Sbjct: 145 EL---------------------------------QGALVEAFRHDTDVLI--------- 162
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+W+ E TVG++G ++PS+ ++ G E K+ P
Sbjct: 163 --------EKWLSGPEFTVGILGD-----DVLPSIRIQVPGVFYDYEAKYLSDETQYFCP 209
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
S +STE + AL G+ R+D + D G ++EVNT PGMT ++
Sbjct: 210 ---SGLSTELEQQLAALALRAYQALGCSGWGRVDVMQDSD-GNFYLLEVNTSPGMTSHSL 265
Query: 712 L 712
+
Sbjct: 266 V 266
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
++VKP+ GSS+G++ +D + +G ++E D V++E +L G EFT +L
Sbjct: 124 LIVKPSHEGSSVGMS----KVDHANELQGALVEAFRHDTDVLIEKWLS-GPEFTVGIL-- 176
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G D P S+ ++ ++Y KYL + + Y P +
Sbjct: 177 --GDDVLP--------------SIRIQVPGVFYDYEAKYL-SDETQYFCPSGLSTELEQQ 219
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+ A +Q LG + R+D V S+ G ++N GM
Sbjct: 220 LAALALRAYQALGCSGWGRVD---------VMQDSD--------GNFYLLEVNTSPGMTS 262
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A + G S S ++ I+
Sbjct: 263 HSLVPMAARQHGLSFSQLVARIL 285
>gi|262044864|ref|ZP_06017907.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037833|gb|EEW39061.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 139/335 (41%), Gaps = 95/335 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K+ FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L A
Sbjct: 49 QLKKQGFKKAFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKW-LWQGA 107
Query: 477 DLGV-----LT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V LT ++ DV ++ L P++ +KP+R+G S
Sbjct: 108 GLPVAPWVALTRAQFAAGLSTDVEQQIAALGLPVI----------------IKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ E C L ++ + A F DE+L
Sbjct: 152 VGMSKVS------------ERCDL---ASALALA------------------FQHDDEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 179 V-----------------EKWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
P A + Q + L A N L +G+ RID ++ D G+ ++E
Sbjct: 217 LSDETQYFCPG----FEDPARESAIQNLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEA 271
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
NT PGMT +++ A Q M Q ++LDL
Sbjct: 272 NTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|205351469|ref|YP_002225270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375122246|ref|ZP_09767410.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445129256|ref|ZP_21380723.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|205271250|emb|CAR36038.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326626496|gb|EGE32839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444853772|gb|ELX78839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ G + + F DEIL +W
Sbjct: 161 NALQ----------GALSL-----------SFQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVTMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|347727122|gb|AEP19919.1| D-alanine D-alanine ligase [Exiguobacterium sp. N39]
Length = 305
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 133/299 (44%), Gaps = 71/299 (23%)
Query: 413 NEWIKLAKENQATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA 471
NE + L QA V + A+HG GEDG +QSLLE G+PYTG GV+AS MDK +
Sbjct: 46 NELLTL----QADVVVSALHGKYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKII 101
Query: 472 LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 531
A G+ + D L IV+ W + C VKPA++G S G
Sbjct: 102 ---FAAAGIRIARDVLIETGDDLDAKIVE-W---GGEFPC---VVKPAQEGSSNG----- 146
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
LT+ A++E +LR G+ + +L+ E ++
Sbjct: 147 ----LTI---AMDETMLR---------EGIDKAFACDTAVLV-EQYI------------- 176
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
KG E+TV V+G G+ + +P + + + E K+ G I++ P
Sbjct: 177 --------KGR----ELTVPVLGNHGA-EAALPVIEIIPKNEFYDYESKYSEGGSIHVCP 223
Query: 652 P--PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
PAS+ TE + + AL G+SR D F+ ++G I+E NT+PGMTP
Sbjct: 224 AELPASL--TEEVQAAAIQAH---RALGCSGYSRSD-FLVSEDGLAYILETNTLPGMTP 276
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 37/207 (17%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVKP + GSS G+T+A +D +GI D V+VE +++ G E T VL
Sbjct: 135 VVKPAQEGSSNGLTIA---MDETMLREGIDKAFACDTAVLVEQYIK-GRELTVPVLGNHG 190
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV +++ K+ ++Y KY + + P P + ++
Sbjct: 191 AEAALPV--------------IEIIPKNEFYDYESKYSEGGSI-HVCPAELPASLTEEVQ 235
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A + LG ++R D FL S E G + N + GM S
Sbjct: 236 AAAIQAHRALGCSGYSRSD--FLVS---------------EDGLAYILETNTLPGMTPLS 278
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
A VG S+ +L I A +
Sbjct: 279 LFPDSARAVGISYGELLERFIALALEK 305
>gi|152968677|ref|YP_001333786.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|424935084|ref|ZP_18353456.1| D-alanine--D-alanine ligase 1 [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|150953526|gb|ABR75556.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|407809271|gb|EKF80522.1| D-alanine--D-alanine ligase 1 [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 139/335 (41%), Gaps = 95/335 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K+ FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L A
Sbjct: 49 QLKKQGFKKAFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKW-LWQGA 107
Query: 477 DLGV-----LT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V LT ++ DV ++ L P++ +KP+R+G S
Sbjct: 108 GLPVAPWVALTRAQFTAGLSTDVEQQIAALGLPVI----------------IKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ + DL ++ + A F DE+L
Sbjct: 152 VGMSKVSESCDLA---------------SALALA------------------FQHDDEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 179 V-----------------EKWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
P A + Q + L A N L +G+ RID ++ D G+ ++E
Sbjct: 217 LSDETQYFCPG----FEDPARESAIQNLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEA 271
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
NT PGMT +++ A Q M Q ++LDL
Sbjct: 272 NTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|398339235|ref|ZP_10523938.1| D-alanyl-alanine synthetase A [Leptospira kirschneri serovar Bim
str. 1051]
gi|418676740|ref|ZP_13238018.1| D-alanine--D-alanine ligase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418686035|ref|ZP_13247205.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|418739865|ref|ZP_13296246.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
gi|421090714|ref|ZP_15551504.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri str. 200802841]
gi|421128690|ref|ZP_15588903.1| D-alanine--D-alanine ligase [Leptospira kirschneri str. 2008720114]
gi|400322640|gb|EJO70496.1| D-alanine--D-alanine ligase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410000300|gb|EKO50930.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri str. 200802841]
gi|410360313|gb|EKP07337.1| D-alanine--D-alanine ligase [Leptospira kirschneri str. 2008720114]
gi|410739461|gb|EKQ84189.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|410752987|gb|EKR09959.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
Length = 351
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTDQVLSLDANIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTEAAITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S ++ E L E
Sbjct: 182 GSSVSTYKITNKEQLK-----------------------------------------ERL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
+LF S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 TLLFESDS------KVMSQSFLAGIEVSCGVLERYRDGKFERVALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V N E I+
Sbjct: 255 SKYEQGGSHEITP---ARISEQEMKRVQELAIAAHKSLGCNGYSRTD-FIIV-NKEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|395760940|ref|ZP_10441609.1| D-alanine--D-alanine ligase [Janthinobacterium lividum PAMC 25724]
Length = 311
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 120/304 (39%), Gaps = 79/304 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA-LNH- 474
+LA E VFIA+HG GEDG+LQ LE G+PYTG GVMA MDKV T + L H
Sbjct: 48 ELAAEKFDRVFIALHGRFGEDGSLQGALEQLGIPYTGSGVMACAVGMDKVYTKMIWLMHQ 107
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
VL D+ + L P++ VKP +G S G+ +
Sbjct: 108 LPTPQYAVLDAQSDLAKVAAELGLPLI----------------VKPPHEGSSIGITTV-- 149
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
N S ++ + ++ E F+
Sbjct: 150 --------------------NEASAFQAAYDIAASLDDSVLAEEFI-------------- 175
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
KG E TV ++GK + +L P V G+ + F T PP
Sbjct: 176 -------KGR----EFTVAILGKGATARALPPIEIVAPQGNYDYQNKYFTDDTKY-FCPP 223
Query: 653 ---PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
PA + E RI + A AL EG+ R+D + + ++ ++EVNT PGMT
Sbjct: 224 QLDPAIVAEME-------RIAVAAYRALGCEGWGRVDVLMRAADSKLFLLEVNTSPGMTS 276
Query: 709 STVL 712
+++
Sbjct: 277 HSLV 280
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP GSSIG+T S +A I +DD V+ E F++ G EFT +L G+
Sbjct: 133 LIVKPPHEGSSIGITTVNEA--SAFQAAYDIAASLDDSVLAEEFIK-GREFTVAILGKGA 189
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
P P E+ + QG+ ++Y+ KY T Y PP+ ++ +
Sbjct: 190 TARALP----PIEI-VAPQGN---------YDYQNKYF-TDDTKYFCPPQLDPAIVAEME 234
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A ++ LG + R+D + + +F ++N GM S
Sbjct: 235 RIAVAAYRALGCEGWGRVDVLMRAADSKLF----------------LLEVNTSPGMTSHS 278
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A VG S+ ++ I A
Sbjct: 279 LVPMAARAVGISYEDLCLEIAAGA 302
>gi|422501693|ref|ZP_16577947.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
gi|313827268|gb|EFS64982.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
Length = 365
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 137/330 (41%), Gaps = 82/330 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTIN 484
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 101 VFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVV 160
Query: 485 KDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+D +ED +LK S+L+ VKPAR G S G++R+ E L ++
Sbjct: 161 RDHEWREDRNAVLKA---------ASRLEYPVF-VKPARGGSSIGISRVTSPEHLETAIE 210
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+R H +++ +
Sbjct: 211 -------------MAREHD----------------------------------SKVLIEQ 223
Query: 602 NSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
R EI VI G+ G+ S+ + V + E K+ G AS+ +
Sbjct: 224 GIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQA 277
Query: 659 TEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST--V 711
LD ++R++ +A L EG +RID FV +D G V + E NT+PG T S+
Sbjct: 278 HANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTLD-GAVYVNEPNTMPGFTRSSGFP 336
Query: 712 LIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 337 LMWQASG----MTYAQIVSELIELALERPL 362
>gi|289425456|ref|ZP_06427233.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK187]
gi|365963054|ref|YP_004944620.1| D-alanine--D-alanine ligase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965294|ref|YP_004946859.1| D-alanine--D-alanine ligase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974227|ref|YP_004955786.1| D-alanine--D-alanine ligase [Propionibacterium acnes TypeIA2
P.acn33]
gi|422427711|ref|ZP_16504622.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
gi|422433550|ref|ZP_16510418.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
gi|422436120|ref|ZP_16512977.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
gi|422438438|ref|ZP_16515282.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
gi|422444430|ref|ZP_16521224.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
gi|422445129|ref|ZP_16521883.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
gi|422450875|ref|ZP_16527588.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
gi|422453749|ref|ZP_16530436.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
gi|422493662|ref|ZP_16569962.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
gi|422510276|ref|ZP_16586422.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
gi|422516622|ref|ZP_16592731.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
gi|422524021|ref|ZP_16600030.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
gi|422531983|ref|ZP_16607929.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
gi|422539079|ref|ZP_16614952.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
gi|422543261|ref|ZP_16619111.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
gi|422545052|ref|ZP_16620882.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
gi|422548184|ref|ZP_16624000.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
gi|422550072|ref|ZP_16625872.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
gi|422558591|ref|ZP_16634331.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
gi|422562686|ref|ZP_16638363.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
gi|422571714|ref|ZP_16647295.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
gi|422579237|ref|ZP_16654760.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
gi|289154434|gb|EFD03122.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK187]
gi|313764084|gb|EFS35448.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
gi|313792389|gb|EFS40484.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
gi|313801475|gb|EFS42724.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
gi|313816433|gb|EFS54147.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
gi|313838238|gb|EFS75952.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
gi|314914945|gb|EFS78776.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
gi|314917830|gb|EFS81661.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
gi|314919720|gb|EFS83551.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
gi|314930037|gb|EFS93868.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
gi|314956384|gb|EFT00696.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
gi|314957256|gb|EFT01359.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
gi|314963173|gb|EFT07273.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
gi|314967705|gb|EFT11804.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
gi|315078236|gb|EFT50279.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
gi|315098176|gb|EFT70152.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
gi|315101671|gb|EFT73647.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
gi|315109490|gb|EFT81466.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
gi|327452374|gb|EGE99028.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
gi|327452749|gb|EGE99403.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
gi|327453502|gb|EGF00157.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
gi|328752616|gb|EGF66232.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
gi|328753831|gb|EGF67447.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
gi|365739735|gb|AEW83937.1| D-alanine--D-alanine ligase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741975|gb|AEW81669.1| D-alanine--D-alanine ligase [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744226|gb|AEW79423.1| D-alanine--D-alanine ligase [Propionibacterium acnes TypeIA2
P.acn33]
Length = 365
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ VKPAR G S G++R+ E L
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLEYPVF-VKPARGGSSIGISRVTSPEHLET-- 207
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
IEM ++ +++ +
Sbjct: 208 --------------------AIEM-------------------------AREHDSKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV +D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTLD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|385652727|ref|ZP_10047280.1| D-alanyl-alanine synthetase A [Leucobacter chromiiresistens JG 31]
Length = 377
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 129/316 (40%), Gaps = 58/316 (18%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDGT+Q +L+ +PY G GV+ S CMDK A LAD G+
Sbjct: 115 AVLPMLHGPYGEDGTVQGMLDLIDLPYVGSGVLGSALCMDKHAVK---TVLADAGIAVAP 171
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ + L P + L + LQ L VKPAR G S GV ++ A +L
Sbjct: 172 WNTVTRSQLDADP--SLASRLDAGLQYP-LFVKPARAGSSVGVTKVTAAAEL-------- 220
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
PE L F E +L S + + + +G
Sbjct: 221 ------------------------PEALDIA-FAEDRTVLVESGVIGREVEIAVLEGRGD 255
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
T VIG+ V G K+ G+G+ L PA + + E
Sbjct: 256 ARPRTSSVIGEI-----------VISGGGFYDFASKYLDGSGVRLD-LPAEVTADEF--A 301
Query: 665 CKQRIELIANAL-QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
QR ++A + Q G +R+D F+ D+G VL E+NT+PG TP + ++ L E M
Sbjct: 302 ALQRDAVLAFEIAQCAGLARVDFFLT-DDGPVL-NEINTLPGFTP--ISMYPRLWEASGM 357
Query: 724 YPHQFFRKVLDLGSER 739
++++L ER
Sbjct: 358 SYTDLITELVELAVER 373
>gi|399527573|ref|ZP_10767268.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp.
ICM39]
gi|398361904|gb|EJN45638.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp.
ICM39]
Length = 378
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 119/286 (41%), Gaps = 60/286 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q L E GV Y G GV +S MDK T L A + V
Sbjct: 116 VFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAA-AGIDVGQWEL 174
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R+ D T +D L + VKP R G S G++R+ C EDL V +K
Sbjct: 175 VTARQWDADATACMDRIERLGFP-----VFVKPCRAGSSVGISRVTCREDLPVAIK---- 225
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
E N P I++ E S +
Sbjct: 226 -----------------EAANHDPRIIV--------EASVSGR----------------- 243
Query: 606 VEITVGVIGKCGSMHS---LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
E+ GV+G S + + V E G+ E K+ + L+ P + ++ E
Sbjct: 244 -EVECGVLGSRSDWRSGTAPLGEIVVPE-GEFYDYEHKYVDDV-VGLSCP--ADVAPEYA 298
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
D+ ++ +AL+ EG +R+D F++ + V+I EVNT+PG TP
Sbjct: 299 DRIRETAWRAFDALECEGLARVDFFLDEASDTVIINEVNTMPGFTP 344
>gi|402782426|ref|YP_006637972.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|402543287|gb|AFQ67436.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 139/335 (41%), Gaps = 95/335 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K+ FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L A
Sbjct: 49 QLKKQGFKKAFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKW-LWQGA 107
Query: 477 DLGV-----LT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V LT ++ DV ++ L P++ +KP+R+G S
Sbjct: 108 GLPVAPWVALTRAQFAAGLSTDVEQQIAALGLPVI----------------IKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ + DL ++ + A F DE+L
Sbjct: 152 VGMSKVSESCDLA---------------SALALA------------------FQHDDEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 179 V-----------------EKWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
P A + Q + L A N L +G+ RID ++ D G+ ++E
Sbjct: 217 LSDETQYFCPG----FKDPARESTIQNLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEA 271
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
NT PGMT +++ A Q M Q ++LDL
Sbjct: 272 NTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|254967038|gb|ACT97555.1| putative D-alanine-D-alanine ligase [uncultured organism]
Length = 366
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 131/318 (41%), Gaps = 60/318 (18%)
Query: 423 QATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 481
+A V I V HG GEDGT+Q LLE G+PY G GV+AS CMDK N + D +
Sbjct: 102 RADVVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVA----NAMFDASGI 157
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
K + ++ + + +KL VKPA G S G+ + A D T +
Sbjct: 158 PHTKWLSATRWEIECDPEGVCDGVIAKLGWPIF-VKPANAGSSVGITK---AHDRTELKE 213
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A+ L ++FE FV+ E+ + ++
Sbjct: 214 AIRLALAN-------------------DRKVVFEAFVDGHEVECAVIGSDPAV------- 247
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
++R EI G + + ++K++ G + P + + E
Sbjct: 248 STRPGEILAG--------------------AEFYTYDDKYKNGVSQVVIP---AKLPEEK 284
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
LD+ K + AL EG +R D FV + G VLI E+NT+PG TP + ++ L E
Sbjct: 285 LDEVKTYAAMAYTALGCEGLARCDFFVEKNTGRVLINEINTLPGFTP--ISMYPKLMEHE 342
Query: 722 PMYPHQFFRKVLDLGSER 739
+ +++ L ER
Sbjct: 343 GIPVPALIDRLIALALER 360
>gi|401680009|ref|ZP_10811933.1| D-ala D-ala ligase N-terminal / phosphoribosylamine--glycine ligase
multi-domain protein [Veillonella sp. ACP1]
gi|400219136|gb|EJO50007.1| D-ala D-ala ligase N-terminal / phosphoribosylamine--glycine ligase
multi-domain protein [Veillonella sp. ACP1]
Length = 310
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 132/318 (41%), Gaps = 70/318 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLTI 483
VF A+HG GEDG LQ LE +PYTG G+MA M+K + H+ ++
Sbjct: 60 VFNAIHGRYGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISY 119
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
N +++ KED++K ++ SK + +KPA G S GV + + L KA+
Sbjct: 120 NGNLQSKEDIIK--------DIESKFSL-PVVLKPATQGSSIGVTIVKEEDQLA---KAV 167
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E L P IL+ E ++ N
Sbjct: 168 TEALTYDP-------------------ILVVEQYL-----------------------NG 185
Query: 604 RWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
R E TV V+ GK ++ + P SG+ K+ G L P P S T+ +
Sbjct: 186 R--EFTVSVLDGKALAIIEIRP-----HSGE-YDYASKYTAGATDYLVPAPISADMTKEM 237
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
EL+ +Q G R+D + D + ++E NT+PGMT +T L+ +A E
Sbjct: 238 QAIG---ELVYREVQASGAIRVDVMTD-DKDNMYVLEYNTIPGMT-ATSLVPKAAKEVGI 292
Query: 723 MYPHQFFRKVLDLGSERF 740
+P + +L G +F
Sbjct: 293 DFPELCEKILLTAGYGKF 310
>gi|331270461|ref|YP_004396953.1| D-alanine--D-alanine ligase [Clostridium botulinum BKT015925]
gi|329127011|gb|AEB76956.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
[Clostridium botulinum BKT015925]
Length = 343
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 117/286 (40%), Gaps = 65/286 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVL 481
VF +HG GEDGT+Q L + +P GPGVM+S CMDKV T L + AD V+
Sbjct: 86 VFPVMHGLYGEDGTIQGLCKLLDIPCVGPGVMSSAVCMDKVYTKYVLENFGIKQADYVVV 145
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T + KED+L ++ +KL +KP+ G S G+
Sbjct: 146 TAHDYKTIKEDILT--------KIENKLGYDVF-IKPSNSGSSVGI-------------- 182
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
S+AH E+ E L F+ V + L
Sbjct: 183 --------------SKAHNREELEKGLSEALKFDRKVLVETAL----------------- 211
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
N+R EI V V+G + P V + + E K+ L P + +S +
Sbjct: 212 NAR--EIEVAVLGN-DEPEAATPGEIVP-ANEFYDYEAKYSNAESKLLLP---ANLSEKK 264
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
L+K K+ I L G SR+D V+ + EV + E+NT+PG T
Sbjct: 265 LEKVKELAIRIYKMLDCSGMSRVDFLVDKETEEVYLNEINTIPGFT 310
>gi|383788838|ref|YP_005473407.1| D-alanine--D-alanine ligase [Caldisericum exile AZM16c01]
gi|381364475|dbj|BAL81304.1| D-alanine--D-alanine ligase [Caldisericum exile AZM16c01]
Length = 309
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 62/299 (20%)
Query: 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 481
N VFIA+HG GEDGT+Q LE +PYTG V AS CM+K+ + ++ V
Sbjct: 54 NPDVVFIALHGKFGEDGTVQGALELLNIPYTGSSVFASALCMNKLFSKFMFR---EIDVK 110
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T + +++ L + ++ L TL +KP G + GV A + Y
Sbjct: 111 TPSFAYFGRDNTLP------YSYVSELLGNSTLVIKPVDQGSTIGV---TIARNEEAYND 161
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
L + E+ + ++I E ++
Sbjct: 162 GLAKAF---------------ELSD----LVIVEDYI----------------------- 179
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
+ EITV +IG +H ++P + + + + E K+ ++ P S
Sbjct: 180 --KGTEITVAIIGNYPDIH-VLPIIEIVPAHEFYDFESKYLPSMSKHIIPARISTYEKAL 236
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
++ +R I L F+RID N + +V ++EVNT+PG T ++++ A +E
Sbjct: 237 AEEYAKR---IYKEFGLRDFARIDMIAN--SSDVYVLEVNTIPGFTETSLVPDAAKAEN 290
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 47/249 (18%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY--- 57
M ++ + PSF G ++ L +V+ L + +V+KP GS+IGVT+A
Sbjct: 103 MFREIDVKTPSFAYFG---RDNTLPYSYVSELL--GNSTLVIKPVDQGSTIGVTIARNEE 157
Query: 58 GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQF 117
D L KA E + D V+VE +++ G+E T + +G+ D H +LP
Sbjct: 158 AYNDGLAKA----FE-LSDLVIVEDYIK-GTEITVAI--IGNYPDIH---VLPI------ 200
Query: 118 QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARI 177
+++ +++ KYLP+ + P R E A +++ GL DFARI
Sbjct: 201 ---IEIVPAHEFYDFESKYLPSMS-KHIIPARISTYEKALAEEYAKRIYKEFGLRDFARI 256
Query: 178 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237
D + +S+ V+ ++N I G +TS + A S +++
Sbjct: 257 D--MIANSSDVY----------------VLEVNTIPGFTETSLVPDAAKAENISFEDLVD 298
Query: 238 TIIGHACSR 246
I+ A R
Sbjct: 299 FIVQEALQR 307
>gi|421356622|ref|ZP_15806942.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421363057|ref|ZP_15813300.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421366119|ref|ZP_15816324.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421386315|ref|ZP_15836329.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421388793|ref|ZP_15838779.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421394484|ref|ZP_15844424.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421403568|ref|ZP_15853413.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421426116|ref|ZP_15875745.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421433677|ref|ZP_15883235.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421439812|ref|ZP_15889293.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|436806630|ref|ZP_20526785.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436812827|ref|ZP_20531159.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436830992|ref|ZP_20535702.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436852282|ref|ZP_20542603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436855574|ref|ZP_20544732.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436866073|ref|ZP_20551849.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436870744|ref|ZP_20554379.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436877027|ref|ZP_20558194.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436887444|ref|ZP_20563781.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436895194|ref|ZP_20568257.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436902149|ref|ZP_20572978.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436909037|ref|ZP_20575925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436916828|ref|ZP_20580487.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436924198|ref|ZP_20585346.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436933569|ref|ZP_20589776.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436940282|ref|ZP_20594290.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436952724|ref|ZP_20601296.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436958754|ref|ZP_20603289.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436972207|ref|ZP_20610209.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436978574|ref|ZP_20612577.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436993124|ref|ZP_20618111.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437003455|ref|ZP_20621635.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437021424|ref|ZP_20627885.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437036807|ref|ZP_20634086.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437040081|ref|ZP_20634526.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437048652|ref|ZP_20639666.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437060102|ref|ZP_20646265.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437064390|ref|ZP_20648411.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437073010|ref|ZP_20652820.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437080860|ref|ZP_20657400.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437093630|ref|ZP_20663947.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437109083|ref|ZP_20667624.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437120780|ref|ZP_20671554.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437130454|ref|ZP_20676623.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437143006|ref|ZP_20684018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437171134|ref|ZP_20700429.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437189692|ref|ZP_20710654.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437269714|ref|ZP_20722935.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281037|ref|ZP_20728318.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437317015|ref|ZP_20737953.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437422656|ref|ZP_20755148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437451834|ref|ZP_20759521.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437459223|ref|ZP_20761075.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437474130|ref|ZP_20766149.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437490058|ref|ZP_20770838.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437501464|ref|ZP_20774312.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437544322|ref|ZP_20782828.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437553998|ref|ZP_20784215.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437576428|ref|ZP_20790597.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437596849|ref|ZP_20796464.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437604192|ref|ZP_20798822.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437615865|ref|ZP_20802443.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437654207|ref|ZP_20810344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437661667|ref|ZP_20813105.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437674244|ref|ZP_20816397.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437689217|ref|ZP_20820027.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437717268|ref|ZP_20828255.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437732720|ref|ZP_20831728.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|395988305|gb|EJH97462.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395990947|gb|EJI00073.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395993541|gb|EJI02635.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|396013221|gb|EJI22109.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396014934|gb|EJI23818.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396019199|gb|EJI28057.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396028355|gb|EJI37116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396055212|gb|EJI63703.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396061604|gb|EJI70026.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396069058|gb|EJI77402.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|434969155|gb|ELL61869.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434975817|gb|ELL68091.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434982622|gb|ELL74432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434984963|gb|ELL76663.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434992328|gb|ELL83785.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434994394|gb|ELL85744.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435001518|gb|ELL92610.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435009065|gb|ELL99861.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435010505|gb|ELM01270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435017310|gb|ELM07817.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435019936|gb|ELM10364.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435029877|gb|ELM19926.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435032610|gb|ELM22541.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435041077|gb|ELM30829.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435042353|gb|ELM32073.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435046256|gb|ELM35873.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435049429|gb|ELM38956.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435055590|gb|ELM45001.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435055789|gb|ELM45199.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435066168|gb|ELM55258.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435069480|gb|ELM58480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435073112|gb|ELM62001.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435073478|gb|ELM62351.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435078369|gb|ELM67101.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435087707|gb|ELM76194.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435091999|gb|ELM80372.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435098505|gb|ELM86746.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435100875|gb|ELM89030.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435109064|gb|ELM97019.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435111365|gb|ELM99269.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435112190|gb|ELN00067.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435119278|gb|ELN06899.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435125609|gb|ELN13050.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435126464|gb|ELN13859.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435141525|gb|ELN28466.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435146778|gb|ELN33560.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435169686|gb|ELN55456.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435171979|gb|ELN57534.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435179471|gb|ELN64619.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435200278|gb|ELN84279.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435208675|gb|ELN92081.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435222472|gb|ELO04580.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435224617|gb|ELO06578.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435230892|gb|ELO12157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435233002|gb|ELO14064.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435234134|gb|ELO15013.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435238583|gb|ELO19212.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435243776|gb|ELO24032.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435244179|gb|ELO24410.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435249412|gb|ELO29237.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435257690|gb|ELO36970.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435262241|gb|ELO41370.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435264475|gb|ELO43388.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435268152|gb|ELO46765.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435278628|gb|ELO56458.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435282309|gb|ELO59931.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435284286|gb|ELO61782.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435287819|gb|ELO64927.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 134/319 (42%), Gaps = 81/319 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 480
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LT+ + + + K I + L VKP+R+G S G+
Sbjct: 117 LTLAEFEKGLSEEQKARISAL---------GLPLIVKPSREGSSVGM------------T 155
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
K +EE L+ + S A F DEIL
Sbjct: 156 KVVEENALQ---GALSLA------------------FQHDDEILI--------------- 179
Query: 601 GNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+W+ E TV ++G+ ++PS+ ++ +G E K+ P
Sbjct: 180 --EKWLCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDAS 232
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
AL Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 233 QEAAL----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA 287
Query: 717 LSEQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 288 --RQAGMSFSQLVVRILEL 304
>gi|197247549|ref|YP_002145116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|440764628|ref|ZP_20943654.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766319|ref|ZP_20945314.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440773217|ref|ZP_20952116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|197211252|gb|ACH48649.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|436415976|gb|ELP13889.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436416673|gb|ELP14576.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436423145|gb|ELP20963.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|213418537|ref|ZP_03351603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 252
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 4 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 62
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 63 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 106
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 107 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 128
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 129 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 183
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 184 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 236
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 237 GMSFSQLVVRILEL 250
>gi|224581973|ref|YP_002635771.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224466500|gb|ACN44330.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 306
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSLSQLVVRILEL 304
>gi|440780051|ref|ZP_20958639.1| D-alanyl-alanine synthetase A [Clostridium pasteurianum DSM 525]
gi|440221727|gb|ELP60931.1| D-alanyl-alanine synthetase A [Clostridium pasteurianum DSM 525]
Length = 343
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 120/291 (41%), Gaps = 73/291 (25%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGV 480
VF +HG GEDGT+Q L +P GP VM+S CMDKV T L H AD V
Sbjct: 85 VVFPVLHGLCGEDGTIQGLCRLIDIPCVGPNVMSSAVCMDKVYTKYLLEHFGIKQADYVV 144
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
LT V E+ K IVD E+ KL +KP+ G S G+
Sbjct: 145 LT---SVEYNEN--KEKIVD---EIEKKLNYDVF-IKPSNSGSSVGI------------- 182
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
++AH E+ + E L ++ V ++ +
Sbjct: 183 ---------------TKAHNKKELVDGIEEALKYDRKVLVEKAI---------------- 211
Query: 601 GNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
N+R E+ V V+G K G ++P + + E K++ L P +
Sbjct: 212 -NAR--EVEVAVLGNDKPKAGVPGEILP------AKEFYDYEAKYEDVESKLLIP---AN 259
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
M+ + L++ K I AL G +R+D V+ + E+ + EVNT+PG T
Sbjct: 260 MNDKELEEIKNTAVRIYTALDCAGMARVDFLVDKETAEIYLNEVNTIPGFT 310
>gi|417346213|ref|ZP_12126135.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353580405|gb|EHC41656.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|456988305|gb|EMG23407.1| D-alanine--D-alanine ligase N-terminal-like protein [Leptospira
interrogans serovar Copenhageni str. LT2050]
Length = 265
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 137/321 (42%), Gaps = 67/321 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
F+ +HGG GEDGT+Q LE G+PYTG GV+AS MDK A+ L +
Sbjct: 6 AFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAMDKTR--------ANQIFLQSGQ 57
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V ++ K ++ + +KL+ +KP G S V ++ E L
Sbjct: 58 KVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGSSVSVYKITNREQLK------ 111
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E ++F S S ++M +
Sbjct: 112 -----------------------------------EKLALIFESDS------KVMSQSFL 130
Query: 604 RWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+E++ GV+ + G + +P+ + G+ E K++ G +TP + +S +
Sbjct: 131 TGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFESKYKQGGSHEITP---ARISEQ 187
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ + ++ +L G+SR D F+ V NGE I+E NT+PGMT ++++ QA +
Sbjct: 188 EMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHILETNTLPGMTETSLIPQQAKAAG 245
Query: 721 PPMYPHQFFRKVLDLGSERFL 741
M + F ++++G +R L
Sbjct: 246 ISM--EEVFSDLIEIGLKRSL 264
>gi|423106433|ref|ZP_17094134.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5242]
gi|376377870|gb|EHS90637.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5242]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 69/313 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIHLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R++ + ++ ++++ L VKP+R+G S G++++ E
Sbjct: 117 LTRKQ--FTEGLSAEVEQQISAL--GLPLIVKPSREGSSVGMSKVS------------ES 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
C L+ N+ + A F DE+L +W
Sbjct: 161 CALQ---NALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P + +
Sbjct: 183 LSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKYLSDETQYFCP---GLEDSTRE 234
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ + ++ ++L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 235 AEIQALVQKAWDSLGCYGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLDL 735
M Q ++LDL
Sbjct: 292 MSFSQLVVRILDL 304
>gi|62178697|ref|YP_215114.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|375113004|ref|ZP_09758174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|62126330|gb|AAX64033.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|322713150|gb|EFZ04721.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|200387797|ref|ZP_03214409.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|417338974|ref|ZP_12120645.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|199604895|gb|EDZ03440.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|357960942|gb|EHJ84591.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|419421509|ref|ZP_13961737.1| D-alanine--D-alanine ligase [Propionibacterium acnes PRP-38]
gi|422396776|ref|ZP_16476807.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1]
gi|327329971|gb|EGE71725.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1]
gi|379978000|gb|EIA11325.1| D-alanine--D-alanine ligase [Propionibacterium acnes PRP-38]
Length = 365
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGRYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ L VKPAR G S G++R+ E L
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISRVTSPEHLET-- 207
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
IEM ++ +++ +
Sbjct: 208 --------------------AIEM-------------------------AREHDSKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|16759125|ref|NP_454742.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29140675|ref|NP_804017.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56412402|ref|YP_149477.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|167550675|ref|ZP_02344432.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168230409|ref|ZP_02655467.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168243455|ref|ZP_02668387.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262185|ref|ZP_02684158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|194451328|ref|YP_002044100.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471648|ref|ZP_03077632.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197361338|ref|YP_002140973.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|213052846|ref|ZP_03345724.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213426153|ref|ZP_03358903.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213585685|ref|ZP_03367511.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213621330|ref|ZP_03374113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213646585|ref|ZP_03376638.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855584|ref|ZP_03383824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|238911187|ref|ZP_04655024.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289823732|ref|ZP_06543344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378958277|ref|YP_005215763.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|386590009|ref|YP_006086409.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|417323843|ref|ZP_12110276.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417400948|ref|ZP_12157472.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|417500528|ref|ZP_12173716.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|419731579|ref|ZP_14258489.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419736117|ref|ZP_14262979.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419738095|ref|ZP_14264862.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742821|ref|ZP_14269491.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419746933|ref|ZP_14273497.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421571288|ref|ZP_16016966.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421575804|ref|ZP_16021413.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421580897|ref|ZP_16026449.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421583743|ref|ZP_16029259.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|421885012|ref|ZP_16316215.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|437816128|ref|ZP_20842488.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|22095576|sp|Q8Z9G7.3|DDLB_SALTI RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|81359629|sp|Q5PDC6.1|DDL_SALPA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|229486018|sp|B5BLC4.1|DDL_SALPK RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|25293550|pir||AG0518 D-alanine,D-alanine ligase B [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16501415|emb|CAD01287.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136299|gb|AAO67866.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126659|gb|AAV76165.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|194409632|gb|ACF69851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458012|gb|EDX46851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197092813|emb|CAR58239.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205324448|gb|EDZ12287.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205335047|gb|EDZ21811.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337394|gb|EDZ24158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205348781|gb|EDZ35412.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|353580702|gb|EHC41862.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353629558|gb|EHC77338.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353653279|gb|EHC94867.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|374352149|gb|AEZ43910.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|379985391|emb|CCF88488.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|381291137|gb|EIC32387.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381292863|gb|EIC34037.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381303577|gb|EIC44604.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381313202|gb|EIC53991.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381320449|gb|EIC61051.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383797053|gb|AFH44135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402518568|gb|EJW25942.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402520709|gb|EJW28049.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402520983|gb|EJW28322.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402531644|gb|EJW38849.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|435308718|gb|ELO83636.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|417931605|ref|ZP_12574970.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK182B-JCVI]
gi|340775548|gb|EGR97601.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK182B-JCVI]
Length = 365
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 144/331 (43%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT-- 482
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + LA+ GVL
Sbjct: 100 VVFPILHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMI---LAEAGVLVGP 156
Query: 483 --INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ +D ++D K ++ + S+LQ L VKPAR G S G++R+ E L
Sbjct: 157 YLVVRDHEWRQD--KNGVL----KAASRLQ-YPLFVKPARGGSSIGISRVTSPEGL---- 205
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
E +ET + + ++ L+ +
Sbjct: 206 ----------------------------------EAAIET--------ARDHDSKVLIEQ 223
Query: 601 G-NSRWVEITVGVIGKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
G + R +E +V + G+ G+ SL + V + E K+ G AS+
Sbjct: 224 GIHGREIECSV-LDGRHGAAPRASLPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKCKQ-RIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
S LD + R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 SRAELDDATRIRVQNVAIKAFRVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
>gi|300715310|ref|YP_003740113.1| D-alanine--D-alanine ligase [Erwinia billingiae Eb661]
gi|299061146|emb|CAX58253.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 146/358 (40%), Gaps = 80/358 (22%)
Query: 381 NQVVNDLVE-GLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 439
N V+ L+E G+ H+ DI D MR L +E FIA+HG GEDGT
Sbjct: 24 NAVLAGLIEAGVDAHA----VDIRDFPVMR--------LKEEGFDKAFIALHGRGGEDGT 71
Query: 440 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 499
LQ +LE +PYTG GVMAS MDK+ T L L V R++ D TP
Sbjct: 72 LQGVLEFLSIPYTGSGVMASAITMDKLRTKF-LWQGCGLPVSPYVALTRKEMDAGLTP-- 128
Query: 500 DIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 557
E +K+ L VKP+ +G S G++R+ A+ L
Sbjct: 129 ----ETEAKIAALGLPVFVKPSCEGSSVGISRVNSADTL--------------------- 163
Query: 558 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 617
+ + E F D++L + + E TV VIG
Sbjct: 164 ------------QAALVEAFRHDDDVLVEAFLSGP--------------EYTVAVIGD-- 195
Query: 618 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 677
++PS+ +K + E K+ P S +S E + + AL
Sbjct: 196 ---EILPSIRIKVVSEFYDYEAKYFSDDTEYFCP---SGLSAEQEAELSDIVIKAWRALG 249
Query: 678 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
G+ R+D + D G+ ++EVNT PGMT + L+ A +Q + Q ++L+L
Sbjct: 250 CSGWGRVDVMMGGD-GQFYLLEVNTSPGMTGHS-LVPMA-GKQAGLSFSQLVARILEL 304
>gi|16763520|ref|NP_459135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167990003|ref|ZP_02571103.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168820876|ref|ZP_02832876.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|197264240|ref|ZP_03164314.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|374982342|ref|ZP_09723663.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378443584|ref|YP_005231216.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378448430|ref|YP_005235789.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378698110|ref|YP_005180067.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378982671|ref|YP_005245826.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378987536|ref|YP_005250700.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379699351|ref|YP_005241079.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383494952|ref|YP_005395641.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|409248545|ref|YP_006884386.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|418857255|ref|ZP_13411884.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418862038|ref|ZP_13416584.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|422024248|ref|ZP_16370740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422029261|ref|ZP_16375534.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427544530|ref|ZP_18926040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427560339|ref|ZP_18930805.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427579594|ref|ZP_18935592.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427601229|ref|ZP_18940406.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427625731|ref|ZP_18945312.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427648968|ref|ZP_18950072.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427659460|ref|ZP_18955023.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427664572|ref|ZP_18959769.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427689389|ref|ZP_18964633.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|22095577|sp|Q8ZRU1.3|DDLB_SALTY RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|16418630|gb|AAL19094.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|197242495|gb|EDY25115.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205331483|gb|EDZ18247.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205342502|gb|EDZ29266.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|261245363|emb|CBG23152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267991808|gb|ACY86693.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301156758|emb|CBW16233.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911099|dbj|BAJ35073.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320084373|emb|CBY94166.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321222296|gb|EFX47368.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323128450|gb|ADX15880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332987083|gb|AEF06066.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380461773|gb|AFD57176.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|392835202|gb|EJA90800.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392836946|gb|EJA92521.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|414024287|gb|EKT07678.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414024667|gb|EKT08034.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414026453|gb|EKT09722.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414038329|gb|EKT21041.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414039158|gb|EKT21842.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414043609|gb|EKT26098.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414052781|gb|EKT34807.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414054241|gb|EKT36194.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414058368|gb|EKT40039.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414062385|gb|EKT43707.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414067840|gb|EKT48104.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J165]
gi|354607323|ref|ZP_09025293.1| hypothetical protein HMPREF1003_01860 [Propionibacterium sp.
5_U_42AFAA]
gi|386024318|ref|YP_005942623.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
gi|422385813|ref|ZP_16465938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3]
gi|422431386|ref|ZP_16508264.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
gi|422449444|ref|ZP_16526169.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
gi|422480983|ref|ZP_16557386.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
gi|422483489|ref|ZP_16559878.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
gi|422488280|ref|ZP_16564609.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
gi|422490381|ref|ZP_16566696.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
gi|422498151|ref|ZP_16574423.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
gi|422501955|ref|ZP_16578200.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
gi|422505912|ref|ZP_16582135.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
gi|422507298|ref|ZP_16583502.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
gi|422513740|ref|ZP_16589863.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
gi|422534701|ref|ZP_16610625.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
gi|422551882|ref|ZP_16627673.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
gi|422555875|ref|ZP_16631637.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
gi|422568294|ref|ZP_16643912.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J165]
gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3]
gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
gi|353557438|gb|EHC26807.1| hypothetical protein HMPREF1003_01860 [Propionibacterium sp.
5_U_42AFAA]
Length = 365
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 137/328 (41%), Gaps = 76/328 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+D +ED + I+ + S+L+ VKPAR G S G++R+ E L
Sbjct: 160 VRDHEWRED--RNAIL----KAASRLEYPVF-VKPARGGSSIGISRVTSPEHLET----- 207
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
IEM ++ +++ +
Sbjct: 208 -----------------AIEM-------------------------AREHDSKVLIEQGI 225
Query: 604 RWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
R EI VI G+ G+ S+ + V + E K+ G AS+ +
Sbjct: 226 RGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQAHA 279
Query: 661 ALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST--VLI 713
LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+ L+
Sbjct: 280 NLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGFPLM 338
Query: 714 HQALSEQPPMYPHQFFRKVLDLGSERFL 741
QA M Q ++++L ER L
Sbjct: 339 WQASG----MTYAQIVSELIELALERPL 362
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ G + P +++ E E + ++L+ V VKP R GSSIG++
Sbjct: 147 LSEAGVLVGPYVVVRDHEWREDRNAILKAASRLEY---PVFVKPARGGSSIGISRVTSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ L+ A + E D +V++E + G E V+D G P +P G
Sbjct: 203 EHLETAIEMAREH-DSKVLIEQGIR-GREIECSVIDGRHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A +++ A FQ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P G + + N + G ++S L QAS G +++ I+
Sbjct: 311 FVTPD-----------------GAVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|168464318|ref|ZP_02698221.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|194444863|ref|YP_002039362.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|207855644|ref|YP_002242295.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|417363070|ref|ZP_12136558.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|418762599|ref|ZP_13318726.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418768500|ref|ZP_13324548.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418770426|ref|ZP_13326447.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777682|ref|ZP_13333609.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418779341|ref|ZP_13335244.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418786675|ref|ZP_13342488.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418787630|ref|ZP_13343431.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418792738|ref|ZP_13348478.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418796543|ref|ZP_13352235.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418800909|ref|ZP_13356553.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418805823|ref|ZP_13361401.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418810184|ref|ZP_13365725.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418816389|ref|ZP_13371881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418820891|ref|ZP_13376322.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418828590|ref|ZP_13383617.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418830601|ref|ZP_13385562.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418835541|ref|ZP_13390434.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418842817|ref|ZP_13397626.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418843650|ref|ZP_13398446.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418849307|ref|ZP_13404040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418855210|ref|ZP_13409868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418869870|ref|ZP_13424301.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419788679|ref|ZP_14314363.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419791558|ref|ZP_14317210.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421371038|ref|ZP_15821198.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421374854|ref|ZP_15824975.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421379842|ref|ZP_15829907.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421399160|ref|ZP_15849056.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421406803|ref|ZP_15856615.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421413849|ref|ZP_15863599.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421417150|ref|ZP_15866861.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421423020|ref|ZP_15872684.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421431568|ref|ZP_15881150.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421446105|ref|ZP_15895525.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421448964|ref|ZP_15898349.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|436618125|ref|ZP_20514423.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436755662|ref|ZP_20520297.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436800441|ref|ZP_20524475.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|437138526|ref|ZP_20681050.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437152861|ref|ZP_20690113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437159437|ref|ZP_20693929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437175005|ref|ZP_20702506.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437182050|ref|ZP_20706782.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437260638|ref|ZP_20717759.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437286925|ref|ZP_20730427.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437322659|ref|ZP_20738876.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437341150|ref|ZP_20744592.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437384294|ref|ZP_20750578.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437808941|ref|ZP_20840501.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437846419|ref|ZP_20847099.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438085740|ref|ZP_20858848.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438098971|ref|ZP_20863093.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|445176198|ref|ZP_21397516.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445191316|ref|ZP_21399824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445225872|ref|ZP_21403662.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445328236|ref|ZP_21412900.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445352778|ref|ZP_21420785.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445358227|ref|ZP_21422491.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|194403526|gb|ACF63748.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|195632730|gb|EDX51184.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|206707447|emb|CAR31720.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|353600683|gb|EHC56501.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|392616765|gb|EIW99194.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392620421|gb|EIX02790.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392731231|gb|EIZ88460.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392736076|gb|EIZ93243.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392737020|gb|EIZ94181.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392743610|gb|EJA00680.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392747505|gb|EJA04503.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392753497|gb|EJA10427.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392765887|gb|EJA22671.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392766691|gb|EJA23464.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392771412|gb|EJA28133.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392782295|gb|EJA38932.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392782500|gb|EJA39134.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392784050|gb|EJA40659.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392789584|gb|EJA46089.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392789750|gb|EJA46252.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392791629|gb|EJA48098.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392801291|gb|EJA57519.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392803565|gb|EJA59758.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392806530|gb|EJA62628.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392816406|gb|EJA72334.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392821791|gb|EJA77614.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392821890|gb|EJA77710.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392833721|gb|EJA89332.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|396004809|gb|EJI13790.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396005659|gb|EJI14636.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396007111|gb|EJI16070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396028506|gb|EJI37266.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396032972|gb|EJI41688.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396038278|gb|EJI46918.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396038696|gb|EJI47331.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396043035|gb|EJI51649.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396052427|gb|EJI60934.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396063523|gb|EJI71914.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396071195|gb|EJI79521.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434958969|gb|ELL52482.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965834|gb|ELL58741.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968652|gb|ELL61399.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435132978|gb|ELN20161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435141883|gb|ELN28813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435149502|gb|ELN36197.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435157245|gb|ELN43706.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435164042|gb|ELN50155.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435165365|gb|ELN51416.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435184224|gb|ELN69169.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435194036|gb|ELN78496.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435195406|gb|ELN79798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435201811|gb|ELN85687.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435299726|gb|ELO75851.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435318944|gb|ELO91832.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435326126|gb|ELO97960.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435338943|gb|ELP08040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|444857083|gb|ELX82098.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444868056|gb|ELX92722.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444868163|gb|ELX92819.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444873587|gb|ELX97880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444880365|gb|ELY04444.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444886140|gb|ELY09905.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 306
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|152979584|ref|YP_001345213.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
gi|171704373|sp|A6VQN1.1|DDL_ACTSZ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|150841307|gb|ABR75278.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
Length = 307
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 128/303 (42%), Gaps = 72/303 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--- 474
L ++ VF +HG GEDG +Q +LE G+PYTG GVM S MDK+ T +
Sbjct: 54 LKQQGFERVFNILHGRGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGL 113
Query: 475 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
+AD+ ++T N + + + ++L L VKP+R+G S G+ ++ A
Sbjct: 114 PIADMEIVTKNTALSLEP-----------QAIVARLGL-PLMVKPSREGSSVGLTKVDSA 161
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
+ L K+ + L+ +I++ E ++ D
Sbjct: 162 DKL----KSAVDLALKF------------------DDIVLIEEWLSGD------------ 187
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
E+TV V+G ++P+V + G+ K+ + P P
Sbjct: 188 -------------ELTVPVLG-----DEVLPAVQIVPEGEFYDYNAKYISDNTRYICPMP 229
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 713
MS E D+ K ++ A+ G+SRID + + G +IEVNT PGMT ++
Sbjct: 230 ---MSDERWDELKNLVKRAYEAVGCRGWSRIDVMTDSE-GNFRLIEVNTTPGMTSHSLFP 285
Query: 714 HQA 716
A
Sbjct: 286 KSA 288
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T D LK A + L+ DD V++E +L G E T VL
Sbjct: 142 LMVKPSREGSSVGLTKVDSA-DKLKSAVDLALK-FDDIVLIEEWLS-GDELTVPVL---- 194
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P V + E E ++Y KY+ + Y P + ++
Sbjct: 195 GDEVLPAVQIVPEGEF--------------YDYNAKYI-SDNTRYICPMPMSDERWDELK 239
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ +G ++RID V + SE G ++N GM S
Sbjct: 240 NLVKRAYEAVGCRGWSRID---------VMTDSE--------GNFRLIEVNTTPGMTSHS 282
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A+ VG+S ++ I+
Sbjct: 283 LFPKSAATVGYSFEKLVEKIL 303
>gi|295104375|emb|CBL01919.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii SL3/3]
Length = 364
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 135/330 (40%), Gaps = 73/330 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
++ K + V +HG GEDGT+Q LLE G+ Y G GV+AS CMDK N L
Sbjct: 95 RVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIAYVGCGVLASSVCMDKAVA----NALF 150
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ + K V ++ + + + KL VKPA G S G++++ E+L
Sbjct: 151 EANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF-VKPANAGSSVGISKVSSQEEL 209
Query: 537 TVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
+ ALE ++FE FV+
Sbjct: 210 KAAIALALEN-----------------------DRKVVFEAFVDGQ-------------- 232
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS------LEEKFQGGTGINL 649
E+ VIG P+V + G+IL+ ++K++ G++
Sbjct: 233 -----------EVECAVIGS-------DPAVATR-PGEILAGAEFYTYDDKYK--NGVSQ 271
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
T PA + + LD+ K + AL EG +R D FV + G VLI E+NT PG T
Sbjct: 272 TVIPAHLPEAK-LDEVKTYAAMAYTALNCEGLARCDFFVEKNTGRVLINEINTFPGFT-- 328
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
+ ++ L E + Q +++ L ER
Sbjct: 329 AISMYPKLMEHEGLPVPQLIDRLIALAVER 358
>gi|423127398|ref|ZP_17115077.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5250]
gi|376394437|gb|EHT07087.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5250]
Length = 306
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 134/318 (42%), Gaps = 79/318 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIHLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R++ + EL ++ L +KP+R+G S G++++
Sbjct: 117 LTRKQFS------AGLSAELEQQIAALGLPLIIKPSREGSSVGMSKVS------------ 158
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E C L+ ++ + A F DE+L
Sbjct: 159 ESCALQ---DALTLA------------------FQHDDEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIM 657
+W+ E TV ++G+ ++PS+ ++ +G E K+ P PA
Sbjct: 181 KWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKYLSDETQYFCPGFEDPARES 235
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
+AL ++ + L G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 236 EIQAL------VQKAWDTLGCYGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA- 287
Query: 718 SEQPPMYPHQFFRKVLDL 735
Q M Q ++LDL
Sbjct: 288 -RQAGMSFSQLVVRILDL 304
>gi|404493845|ref|YP_006717951.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
gi|123573744|sp|Q3A2G9.1|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
Length = 305
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 120/296 (40%), Gaps = 71/296 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K FIA+HG GEDGT+Q LLE +PYTG GV+AS MDKVAT L +
Sbjct: 55 QLEKTGVEVAFIALHGRFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCY-- 112
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
G+ T V R+ ++ L L VKPAR+G + G++ + ++L
Sbjct: 113 -HGIATPGFAVMRR-----------GQKICGTLPDYPLVVKPAREGSTIGISIVHDEQEL 160
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE ++++ E F+
Sbjct: 161 AA---GLEEAFRH-------------------DDLVLVEQFIA----------------- 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TVGV+ +P + V G + K+ G L P P
Sbjct: 182 --------GAEVTVGVLDG-----QPLPIIQVVPKGGFYDYQSKYTPGQTEYLLPAPLPE 228
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
AL R + A+ G +R+D F+ D G +EVNT+PGMT +++L
Sbjct: 229 TLYGALQDSAVR---VFEAIGCCGAARVD-FMVTDTG-FYCLEVNTIPGMTETSLL 279
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 44/209 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
+VVKP R GS+IG+++ + D + A G+ E DD V+VE F+ G+E T VLD
Sbjct: 138 LVVKPAREGSTIGISIVH---DEQELAAGL-EEAFRHDDLVLVEQFI-AGAEVTVGVLD- 191
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
P LP + V K ++Y+ KY P Q Y P P + +
Sbjct: 192 -----GQP---LPI---------IQVVPKGGFYDYQSKYTPGQ-TEYLLPAPLPETLYGA 233
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+++ A +F+ +G C AR+D F+ + T + ++N I GM +
Sbjct: 234 LQDSAVRVFEAIGCCGAARVD--FMVTDTGFYC----------------LEVNTIPGMTE 275
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACSR 246
TS L + A+ VG S ++ I+ A R
Sbjct: 276 TSLLPKAANAVGMSFDELVERILAGASLR 304
>gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
Length = 377
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 116/286 (40%), Gaps = 63/286 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 483
+F +HG GEDGT+Q LLE +PY G GV+AS MDKV H L
Sbjct: 108 IFPLLHGTFGEDGTIQGLLEMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFRYF 167
Query: 484 NKDVRRKE-DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
N+ KE D T I E++ C +KPA G S G+++ E+L ++A
Sbjct: 168 NRTQWDKETDYYVTEI-----EVSLGYPC---FIKPANLGSSVGISKAKNREEL---IEA 216
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+ + R +I E FV+ EI S +
Sbjct: 217 INYAF------RYDRK-------------VIVEEFVDAREIEVSVLGND----------- 246
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
E V G+ ++ S D + K+ GT + P +++EA+
Sbjct: 247 ----EPKASVPGE------------IRPSNDFYDYKAKYIDGTSVMEIPANIPALTSEAV 290
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ R A+ G SR+D F+ +GE+ I EVNT+PG TP
Sbjct: 291 REMAIR---AYQAIDGSGLSRVDFFMRKSDGELFINEVNTMPGFTP 333
>gi|296101255|ref|YP_003611401.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055714|gb|ADF60452.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 306
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 136/313 (43%), Gaps = 71/313 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LL+ G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
RR+ + + D + ++L + VKP+R+G S G++++ A+DL+ +
Sbjct: 117 LTRRE---FEMGLQDSVNARIAELGLPVI-VKPSREGSSVGMSKVDKADDLSSALAV--- 169
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
F +E+L +W
Sbjct: 170 ------------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +
Sbjct: 183 LSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFC--PAGLEAEREA 235
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
D Q + L A + L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 236 D--LQSLVLKAWHVLGCSGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLD 734
M Q ++LD
Sbjct: 291 GMSFSQLVVRILD 303
>gi|401762276|ref|YP_006577283.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400173810|gb|AFP68659.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 306
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 133/312 (42%), Gaps = 69/312 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
RR+ +L + D + + L + VKP+R+G S G++++ AED+
Sbjct: 117 LTRREFEL---GLSDSVNTRIAALGLPVI-VKPSREGSSVGMSKVDKAEDIA-------- 164
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
++ + A F +E+L +W
Sbjct: 165 -------SALALA------------------FQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P + E
Sbjct: 183 LSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFCPCG---LEAERE 234
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ + N L G+ RID + D G+ ++E NT PGMT +++ A Q
Sbjct: 235 ADLQSLVLKAWNILGCRGWGRIDVMQDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLD 734
M Q ++LD
Sbjct: 292 MSFSQLVVRILD 303
>gi|393778127|ref|ZP_10366409.1| Ddl protein [Ralstonia sp. PBA]
gi|392714862|gb|EIZ02454.1| Ddl protein [Ralstonia sp. PBA]
Length = 320
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 127/296 (42%), Gaps = 65/296 (21%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNHLA 476
LA VFIA+HG GEDGT+Q LE G+PYTG GV+AS MDK AT L ++H
Sbjct: 54 LATAGFKRVFIALHGRYGEDGTIQGALEMLGIPYTGSGVLASALAMDKQATKRLWMSH-- 111
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
G+ T + R + W+++ + L L VKPAR+G S G+ ++ A L
Sbjct: 112 --GLPTPKFRMLRAD--------SDWNDVVADLGLP-LIVKPAREGSSIGLTKVTDATML 160
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
P +++RA + +I E F+E D
Sbjct: 161 ---------------PAAYARAAKL-------DRDVIAETFIEGD--------------- 183
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+T V+G G+ +P V + + K+ L P S
Sbjct: 184 ----------ELTCPVVG-TGAEARALPVVRIVAPEANYDYQNKYFKDDVRYLCP---SG 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ E + ++ + L G+ R D ++ NG+ ++E+NT PGMT +++
Sbjct: 230 LAPEVEAEVQRLVVESYRVLGCRGWGRADVMLSHANGKPYLLEMNTSPGMTSHSLV 285
>gi|417388019|ref|ZP_12152276.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353627236|gb|EHC75587.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
Length = 306
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILV-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|345022875|ref|ZP_08786488.1| D-alanyl-alanine synthetase A [Ornithinibacillus scapharcae TW25]
Length = 366
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/471 (24%), Positives = 189/471 (40%), Gaps = 132/471 (28%)
Query: 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 339
++V +IFGG ++E +VSL S N+ + A + + L+ ID + N D
Sbjct: 4 KKVGIIFGGKSAEHEVSLQSAKNI---VDAIDKEKFDVVLIG--IDKAGKWHLN----DK 54
Query: 340 SSRVVWSL-PYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVN-DLVEGLKKHSWF 397
SS ++ + P + L T + V AI P + NQ+++ D GL
Sbjct: 55 SSYLLNAENPKLIALNKTDDNV------AIVPGSS------NNQLIHADNAAGL------ 96
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
D+L + VF VHG +GEDG+LQ +L +P+ GP V+
Sbjct: 97 ------DQLDV-----------------VFPIVHGTLGEDGSLQGMLRMANLPFVGPSVL 133
Query: 458 ASKTCMDK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK 512
S CMDK + S +N + V NKD R +++ SK
Sbjct: 134 GSSVCMDKDIAKRLLQSAGINVAKGITVKRSNKDQIRFDEV-------------SKALGT 180
Query: 513 TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEIL 572
+ +KPA G S GV+++ E+ + A+EE +F H +I+
Sbjct: 181 PMFIKPANQGSSVGVSKVKSEEEFNI---AVEE--------AFQYDH----------KIV 219
Query: 573 IFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTV 628
I E V EI V V+G K ++P+
Sbjct: 220 IEENIVGR--------------------------EIEVAVLGNDDPKASVPGEILPNT-- 251
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
D S E K+ G +L P ++ + + K + L+ EG +R+D F+
Sbjct: 252 ----DFYSYESKYIDEKGADLAIPAE--LTEDQVKKIQAAAIEAFKTLECEGLARVDFFL 305
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
+N E+ + EVNT+PG T + ++ L E + + +++DL ER
Sbjct: 306 -TENDELYVNEVNTLPGFT--KISMYPKLWELSGVPYSELISRLIDLALER 353
>gi|438108161|ref|ZP_20866916.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435333280|gb|ELP04107.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
Length = 306
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGILELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|303228450|ref|ZP_07315283.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
ACS-134-V-Col7a]
gi|303230853|ref|ZP_07317600.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302514613|gb|EFL56608.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302516952|gb|EFL58861.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 310
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 131/318 (41%), Gaps = 70/318 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLTI 483
VF A+HG GEDG LQ LE +PYTG G+MA M+K + H+ ++
Sbjct: 60 VFNAIHGRYGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISY 119
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
N +++ KED++K ++ SK + +KPA G S GV + L KA+
Sbjct: 120 NGNLQSKEDIIK--------DIESKFSL-PVVLKPATQGSSIGVTIVKEENQLA---KAV 167
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E L P IL+ E ++ N
Sbjct: 168 TEALTYDP-------------------ILVVEQYL-----------------------NG 185
Query: 604 RWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
R E TV V+ GK ++ + P SG+ K+ G L P P S T+ +
Sbjct: 186 R--EFTVSVLDGKALAIIEIRP-----HSGE-YDYASKYTAGATDYLVPAPISADMTKEM 237
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
EL+ +Q G R+D + D + ++E NT+PGMT +T L+ +A E
Sbjct: 238 QAIG---ELVYREVQASGAIRVDVMTD-DKDNMYVLEYNTIPGMT-ATSLVPKAAKEVGI 292
Query: 723 MYPHQFFRKVLDLGSERF 740
+P + +L G +F
Sbjct: 293 DFPELCEKILLTAGYGKF 310
>gi|422390302|ref|ZP_16470397.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1]
gi|422459150|ref|ZP_16535798.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
gi|422465256|ref|ZP_16541863.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
gi|422564392|ref|ZP_16640043.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
gi|422575569|ref|ZP_16651107.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1]
Length = 365
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ L VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISRVTSPEHLETAI 209
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDVTRRRVQEVAVKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ G + P +++ E E + ++L+ + VKP R GSSIG++
Sbjct: 147 LSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEY---PLFVKPARGGSSIGISRVTSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ L+ A + E D +V++E + G E V+D G P +P G
Sbjct: 203 EHLETAIEMAREH-DSKVLIEQGIR-GREIECSVIDGRHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A V ++E A FQ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAVKAFQVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P G + + N + G ++S L QAS G +++ I+
Sbjct: 311 FVTPD-----------------GAVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|378578142|ref|ZP_09826822.1| D-alanine:D-alanine ligase [Pantoea stewartii subsp. stewartii
DC283]
gi|377819251|gb|EHU02331.1| D-alanine:D-alanine ligase [Pantoea stewartii subsp. stewartii
DC283]
Length = 305
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 128/310 (41%), Gaps = 63/310 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ++LE +PYTG GVMAS MDK+ T L L K
Sbjct: 57 VFIALHGRGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRG----LPAGK 112
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V +++ + D L VKP+ +G S G++R+ DL + ALEE
Sbjct: 113 FVWMTRAQMQSGL-DAATAAAIAALGFPLFVKPSSEGSSVGISRVNQQGDL---MAALEE 168
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
F D +L + + +
Sbjct: 169 A------------------------------FRHDDNVLIEAFLSGE------------- 185
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E TVG++G ++P++ +K + + E K+ P +S E +
Sbjct: 186 -EYTVGILGD-----QILPAIKIKTASEFYDYEAKYISDDTQYFCPAG---LSAEREAEL 236
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
+Q + AL +G+ R+D + G ++E NT PGMT +++ A +Q +
Sbjct: 237 QQLVWSAWQALGCQGWGRVDVMTD-GEGRFQLLEANTSPGMTSHSLVPMAA--KQAGLTF 293
Query: 726 HQFFRKVLDL 735
Q ++L+L
Sbjct: 294 SQLVVRILEL 303
>gi|386071129|ref|YP_005986025.1| D-alanine--D-alanine ligase [Propionibacterium acnes ATCC 11828]
gi|422465578|ref|ZP_16542171.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
gi|422468037|ref|ZP_16544576.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
gi|353455495|gb|AER06014.1| D-alanine--D-alanine ligase [Propionibacterium acnes ATCC 11828]
Length = 365
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ L VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISRVTSPEHLETAI 209
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ G + P +++ E E + ++L+ + VKP R GSSIG++
Sbjct: 147 LSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEY---PLFVKPARGGSSIGISRVTSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ L+ A + E D +V++E + G E V+D G P +P G
Sbjct: 203 EHLETAIEMAREH-DSKVLIEQGIR-GREIECSVIDGRHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A V ++E A FQ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P G + + N + G ++S L QAS G +++ I+
Sbjct: 311 FVTPD-----------------GAVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|402844942|ref|ZP_10893289.1| D-ala D-ala ligase N-terminal domain protein [Klebsiella sp. OBRC7]
gi|402272542|gb|EJU21760.1| D-ala D-ala ligase N-terminal domain protein [Klebsiella sp. OBRC7]
Length = 306
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 136/313 (43%), Gaps = 69/313 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R++ + + V+ + S L L VKP+R+G S G++++ +
Sbjct: 117 LTRKQFTVGLSAKVE---QQISALGLP-LIVKPSREGSSVGMSKVS------------KS 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
C L+ N+ + A F DE+L +W
Sbjct: 161 CALQ---NALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P + +
Sbjct: 183 LSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKYLSDETQYFCP---GLEDSTRE 234
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ + ++ ++L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 235 AEIQALVQKAWDSLGCYGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLDL 735
M Q ++LDL
Sbjct: 292 MSFSQLVVRILDL 304
>gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
gi|335051324|ref|ZP_08544250.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
409-HC1]
gi|335053710|ref|ZP_08546541.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
434-HC2]
gi|342211420|ref|ZP_08704145.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
CC003-HC2]
gi|387503739|ref|YP_005944968.1| D-alanine--D-alanine ligase [Propionibacterium acnes 6609]
gi|407935770|ref|YP_006851412.1| D-alanine--D-alanine ligase [Propionibacterium acnes C1]
gi|422456994|ref|ZP_16533656.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
gi|422495428|ref|ZP_16571715.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
gi|333766379|gb|EGL43685.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
434-HC2]
gi|333767213|gb|EGL44471.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
409-HC1]
gi|335277784|gb|AEH29689.1| D-alanine--D-alanine ligase [Propionibacterium acnes 6609]
gi|340766964|gb|EGR89489.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium sp.
CC003-HC2]
gi|407904351|gb|AFU41181.1| D-alanine--D-alanine ligase [Propionibacterium acnes C1]
Length = 365
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 136/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ VKPAR G S G++R+ E L
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLEYPVF-VKPARGGSSIGISRVTSPEHLET-- 207
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
IEM ++ +++ +
Sbjct: 208 --------------------AIEM-------------------------AREHDSKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ G + P +++ E E + ++L+ V VKP R GSSIG++
Sbjct: 147 LSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEY---PVFVKPARGGSSIGISRVTSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ L+ A + E D +V++E + G E V+D G P +P G
Sbjct: 203 EHLETAIEMAREH-DSKVLIEQGIR-GREIECSVIDGRHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A +++ A FQ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P G + + N + G ++S L QAS G +++ I+
Sbjct: 311 FVTPD-----------------GAVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|302391535|ref|YP_003827355.1| D-alanine--D-alanine ligase [Acetohalobium arabaticum DSM 5501]
gi|302203612|gb|ADL12290.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501]
Length = 311
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 123/311 (39%), Gaps = 72/311 (23%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 472
N + +L E FIA+HG GEDGT+Q L E +PYTG GV+AS MDK+ +
Sbjct: 46 NFYQQLTTEEIDVAFIALHGRYGEDGTIQGLFEMMDIPYTGSGVLASSLAMDKIISKKLF 105
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------LCVKPARDGCST 525
GVLT V + + W + KL + + VKPA +G S
Sbjct: 106 QQ---EGVLTPEFKVISRNN---------WDQQAEKLLTELKIELDLPVVVKPALEGSSL 153
Query: 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585
G++ + E+L V F +E+L
Sbjct: 154 GLSIIKKRENLATAVDT---------------------------------AFEYDNEVLV 180
Query: 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
K EIT+G++G S++P + +K E K+ G
Sbjct: 181 EKYIAGK--------------EITIGILGNQD--LSVLPIIEIKPKTGAYDFEAKYTKGM 224
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
+ P + + E ++ ++ L+ G +R D V+ G+ ++EVNT+PG
Sbjct: 225 TEFVIP---AQLEEEIYNQAQKIANKAYRVLKCSGMARADLIVS-KEGKPYVLEVNTIPG 280
Query: 706 MTPSTVLIHQA 716
MT +++L A
Sbjct: 281 MTETSLLPQAA 291
>gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|352684899|ref|YP_004896884.1| D-alanine-D-alanine ligase [Acidaminococcus intestini RyC-MR95]
gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|350279554|gb|AEQ22744.1| D-alanine-D-alanine ligase [Acidaminococcus intestini RyC-MR95]
Length = 312
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 121/301 (40%), Gaps = 80/301 (26%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----------HL 475
VF AVHG GEDG LQ++LE GVPYTG GV++S M+K T +L
Sbjct: 61 VFNAVHGLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYL 120
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
D T +D+ RK L P V VKPA G S GV + ED
Sbjct: 121 TDKDRQTAKQDIIRK---LGIPCV----------------VKPAEQGSSIGVTIVKKEED 161
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KALEE +FS ++++ E F F+ +
Sbjct: 162 LD---KALEE--------AFSYG-----------KLVLAEAF-------FTGK------- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+ GV+ MP V ++ D K+ G P P
Sbjct: 186 -----------EVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFD 234
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
T+AL ++ AL G +R+D V+ + G + +EVNT+PGMT ++++
Sbjct: 235 ECLTKAL---QEEAVKAYKALGCSGVARVDEMVDAE-GNFICLEVNTIPGMTATSLVPKA 290
Query: 716 A 716
A
Sbjct: 291 A 291
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 74/200 (37%), Gaps = 34/200 (17%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 100
VVKP GSSIGVT+ D K + G V+ E F G +++D
Sbjct: 141 VVKPAEQGSSIGVTIVKKEEDLDKALEEAFSYG--KLVLAEAFFTGKEVAAGVMMDSSGN 198
Query: 101 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160
P+VL+ V+ ++Y KY Y P F + +++E
Sbjct: 199 PIAMPLVLIEPHVDF--------------YDYHNKYT-KGATTYTCPAPFDECLTKALQE 243
Query: 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 220
A ++ LG AR+D G + ++N I GM TS
Sbjct: 244 EAVKAYKALGCSGVARVDEMV-----------------DAEGNFICLEVNTIPGMTATSL 286
Query: 221 LFQQASKVGFSHSNILRTII 240
+ + A +G S ++ I+
Sbjct: 287 VPKAAKAMGLSFPDLCEKIL 306
>gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein, partial
[Propionibacterium acnes SK137]
gi|417929313|ref|ZP_12572697.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK182]
gi|422387625|ref|ZP_16467737.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2]
gi|422392367|ref|ZP_16472437.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1]
gi|422426194|ref|ZP_16503118.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
gi|422462221|ref|ZP_16538845.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
gi|422478606|ref|ZP_16555025.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
gi|422486227|ref|ZP_16562583.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
gi|422518955|ref|ZP_16595023.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
gi|422522213|ref|ZP_16598243.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
gi|422527598|ref|ZP_16603588.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
gi|422530182|ref|ZP_16606146.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
gi|422537025|ref|ZP_16612913.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
gi|422560633|ref|ZP_16636320.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK137]
gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2]
gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1]
gi|340773436|gb|EGR95928.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK182]
gi|456738482|gb|EMF63049.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes FZ1/2/0]
Length = 365
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 136/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ VKPAR G S G++R+ E L
Sbjct: 160 VRDHEWREDRNAVLKA---------VSRLEYPVF-VKPARGGSSIGISRVTSPEHLET-- 207
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
IEM ++ +++ +
Sbjct: 208 --------------------AIEM-------------------------AREHDSKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ G + P +++ E E + ++L+ V VKP R GSSIG++
Sbjct: 147 LSEAGVLVGPYVVVRDHEWREDRNAVLKAVSRLEY---PVFVKPARGGSSIGISRVTSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ L+ A + E D +V++E + G E V+D G P +P G
Sbjct: 203 EHLETAIEMAREH-DSKVLIEQGIR-GREIECSVIDGRHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A +++ A FQ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P G + + N + G ++S L QAS G +++ I+
Sbjct: 311 FVTPD-----------------GAVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|78059985|ref|YP_366560.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
gi|77964535|gb|ABB05916.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
Length = 342
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 123/292 (42%), Gaps = 71/292 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
F+A+HGG GEDGT+Q++L+ GVPYTG G M S M+K T + +G+ T
Sbjct: 95 AFLALHGGTGEDGTIQAMLDLAGVPYTGSGHMGSAIAMNKDMTK---RLFSSVGIRT--- 148
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ +L DI + L VKP R G + G++
Sbjct: 149 ---PRWMMLPCDFDDIPRRVGYP-----LIVKPNRQGSTVGLS----------------- 183
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ P DE+ + + + ++M +
Sbjct: 184 --------------------------LVHTP----DELESAVRLARRFDTQVMVEQYIAG 213
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+TVGV+G +L V E G I K+Q G + P + EA
Sbjct: 214 RELTVGVLGA----QALSVGEIVIEPGTIFDYRSKYQAGHVLEQFPATLPAATLEA---- 265
Query: 666 KQRIELIANA-LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
QRI L A+A L+L+G+SR D ++ G + +EVNT+PGMT +++L A
Sbjct: 266 AQRIALRAHALLELDGYSRTDLRLDA-QGILWCLEVNTLPGMTATSLLPQSA 316
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 42/202 (20%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GS++G+++ + D L+ A + D +V+VE ++ G E T VL
Sbjct: 169 LIVKPNRQGSTVGLSLVH-TPDELESAVRLARR-FDTQVMVEQYI-AGRELTVGVLG-AQ 224
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
+V+ E IF+YR KY A H +FP + +
Sbjct: 225 ALSVGEIVI----------------EPGTIFDYRSKY-----QAGHVLEQFPATLPAATL 263
Query: 160 EGASLLFQRLGLCDFA--RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
E A QR+ L A +DG+ S T G + ++N + GM
Sbjct: 264 EAA----QRIALRAHALLELDGY-----------SRTDLRLDAQGILWCLEVNTLPGMTA 308
Query: 218 TSFLFQQASKVGFSHSNILRTI 239
TS L Q A+ G + + I
Sbjct: 309 TSLLPQSAAASGIAFPQLCEQI 330
>gi|146329245|ref|YP_001209868.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
gi|190359128|sp|A5EY21.1|DDL_DICNV RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|146232715|gb|ABQ13693.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
Length = 310
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 131/329 (39%), Gaps = 71/329 (21%)
Query: 387 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 446
L+ G H+ I L N L E+ + F+ +HG GEDG +Q++L+
Sbjct: 25 LIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVMLHGRGGEDGEIQAILQW 84
Query: 447 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 506
G+PYTG V+A MDKV A L VL D+L TP + L
Sbjct: 85 LGIPYTGSRVLACALAMDKVVCKKVWQS-AGLPVLA---------DVLVTP-ESRFETLV 133
Query: 507 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 566
+L C+ +KPA +G S GV+R VK E+ IP +RA
Sbjct: 134 EQLHCQDFVIKPALEGSSVGVSR----------VKNQEQLAAAIPFAGGARAK------- 176
Query: 567 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 626
++ EP++ E+T G++ +++P++
Sbjct: 177 -----IMAEPWIVGR-------------------------ELTYGIVND-----TVLPAI 201
Query: 627 TVKESG--DILSLEEKFQGGTGINLTPPPASIMSTEALD-KCKQRIELIANALQLEGFSR 683
+ D + K+ L P P ALD +C++ A+ G+ R
Sbjct: 202 EIVAGNDHDFYDYDAKYHAANTQYLCPAPID----AALDARCREIAFAAFQAIGARGWGR 257
Query: 684 IDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+D V+ N L +E+N VPGMT +++
Sbjct: 258 VDMIVDAQNRPYL-LEINLVPGMTTHSLV 285
>gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J139]
gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes J139]
Length = 365
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ L VKPAR G S G++R+ E L +
Sbjct: 160 VRDHEWREDRNAVLKA---------ASRLE-YPLFVKPARGGSSIGISRVTSPEHLETAI 209
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+ +R H +++ +
Sbjct: 210 E-------------MAREHD----------------------------------SKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDVTRRRVQEVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ G + P +++ E E + ++L+ + VKP R GSSIG++
Sbjct: 147 LSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEY---PLFVKPARGGSSIGISRVTSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ L+ A + E D +V++E + G E V+D G P +P G
Sbjct: 203 EHLETAIEMAREH-DSKVLIEQGIR-GREIECSVIDGRHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A V ++E A FQ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P G + + N + G ++S L QAS G +++ I+
Sbjct: 311 FVTPD-----------------GAVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|160944621|ref|ZP_02091848.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii
M21/2]
gi|158443805|gb|EDP20809.1| D-ala D-ala ligase N-terminal domain protein [Faecalibacterium
prausnitzii M21/2]
Length = 364
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 135/330 (40%), Gaps = 73/330 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
++ K + V +HG GEDGT+Q LLE G+ Y G GV+AS CMDK N L
Sbjct: 95 RVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIAYVGCGVLASSVCMDKAVA----NALF 150
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ + K V ++ + + + KL VKPA G S G++++ E+L
Sbjct: 151 EANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF-VKPANAGSSVGISKVSNQEEL 209
Query: 537 TVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
+ ALE ++FE FV+
Sbjct: 210 KAAIALALEN-----------------------DRKVVFEAFVDGQ-------------- 232
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS------LEEKFQGGTGINL 649
E+ VIG P+V + G+IL+ ++K++ G++
Sbjct: 233 -----------EVECAVIGS-------DPAVATR-PGEILAGAEFYTYDDKYK--NGVSQ 271
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
T PA + + LD+ K + AL EG +R D FV + G VLI E+NT PG T
Sbjct: 272 TVIPAHLPEAK-LDEVKTYAAMAYTALNCEGLARCDFFVEKNTGRVLINEINTFPGFT-- 328
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
+ ++ L E + Q +++ L ER
Sbjct: 329 AISMYPKLMEHEGLPVPQLIDRLIALAVER 358
>gi|334123454|ref|ZP_08497479.1| D-alanine-D-alanine ligase B [Enterobacter hormaechei ATCC 49162]
gi|333390663|gb|EGK61795.1| D-alanine-D-alanine ligase B [Enterobacter hormaechei ATCC 49162]
Length = 306
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 136/315 (43%), Gaps = 77/315 (24%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 59 FIALHGRGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVAL 117
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVKALE 544
RR+ +L + + +++ L VKP+R+G S G++++ A DL
Sbjct: 118 TRREFEL------GLSDSVNTRIAALGLPVIVKPSREGSSVGMSKVDKAVDLA------- 164
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
++ + A F +E+L +
Sbjct: 165 --------DALALA------------------FQHDEEVLI-----------------EK 181
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ P EA
Sbjct: 182 WLSGPEFTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFCPA-----GLEA 231
Query: 662 LDKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+ + Q + L A N L G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 232 AREAELQSLVLKAWNVLGCRGWGRIDVMLDGD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLD 734
Q M Q ++LD
Sbjct: 289 QAGMSFSQLVVRILD 303
>gi|409408893|ref|ZP_11257328.1| D-alanine-D-alanine ligase B protein [Herbaspirillum sp. GW103]
gi|386432215|gb|EIJ45043.1| D-alanine-D-alanine ligase B protein [Herbaspirillum sp. GW103]
Length = 334
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 121/305 (39%), Gaps = 68/305 (22%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P S+ E L E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS MDK+
Sbjct: 50 PAERSLGE---LQAEKFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKI 106
Query: 467 ATS-LALNH-LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
T + L+H L L+++ +E L P EL L +K +G +
Sbjct: 107 MTKRIWLSHALPTPRFLSLDAKATSREQLRVVP-----DELGLPLM-----LKAPHEGST 156
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G+A++ N +S EM +++ E F+
Sbjct: 157 IGIAKV----------------------NGYSDMQVSFEMCARYDSVVLAEEFI------ 188
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 644
R E+TV V+G+ G +P + + + K+
Sbjct: 189 -------------------RGRELTVPVLGQ-GRDARALPVIEICAPDGNYDYQNKYFTD 228
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG--EVLIIEVNT 702
P P T + R NAL G+SR+D + +G E +IE+NT
Sbjct: 229 DTKYYCPAPLDAELTRHIQDLAVR---AFNALGCRGWSRVDFMLREADGKAEPYLIEINT 285
Query: 703 VPGMT 707
PGMT
Sbjct: 286 SPGMT 290
>gi|53729117|ref|ZP_00348323.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126207508|ref|YP_001052733.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165975478|ref|YP_001651071.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190149289|ref|YP_001967814.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250499|ref|ZP_07336696.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307244821|ref|ZP_07526920.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307249219|ref|ZP_07531216.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307251541|ref|ZP_07533448.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253775|ref|ZP_07535629.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256041|ref|ZP_07537829.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307260471|ref|ZP_07542166.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307262602|ref|ZP_07544232.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|166198470|sp|A3MY92.1|DDL_ACTP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|190359107|sp|B0BRH9.1|DDL_ACTPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|229485852|sp|B3GZL0.1|DDL_ACTP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|126096300|gb|ABN73128.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165875579|gb|ABY68627.1| D-alanine-D-alanine ligase B [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189914420|gb|ACE60672.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302650487|gb|EFL80646.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306854266|gb|EFM86472.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306858743|gb|EFM90802.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306861005|gb|EFM93011.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863259|gb|EFM95199.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865463|gb|EFM97358.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306869874|gb|EFN01656.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306872025|gb|EFN03739.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 303
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 131/321 (40%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T + V R+ + + + ++ +KL VKP+ +G S GV ++ E L
Sbjct: 110 -VGLPTADMVVVRRGEAVDS------EQIIAKLGLPVF-VKPSSEGSSVGVTKVKTVEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L F I++ E F+
Sbjct: 162 ---LPAVEEAL------KFDS-------------IVLVEAFL------------------ 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
G V + G ++P+V + G+ K+ L P +
Sbjct: 182 ---AGKEYSVPVLDG---------QVLPAVQIIPEGEFYDYHAKYISDNTQYLVPALSDD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E + K E++ G+SRID + NG ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAELVKAAYEVVG----CRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ P + +VL+L +
Sbjct: 285 ATVGIPF--EKLVERVLELSA 303
>gi|422475506|ref|ZP_16551953.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
Length = 365
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 136/331 (41%), Gaps = 82/331 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVLTI 483
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + L+ L G +
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMILSEAGVLVGPYVV 159
Query: 484 NKDVRRKED---LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+D +ED +LK S+L+ VKPAR G S G++R+ E L
Sbjct: 160 VRDHEWREDRKAVLKA---------VSRLEYPVF-VKPARGGSSIGISRVTSPEHLET-- 207
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
IEM ++ +++ +
Sbjct: 208 --------------------AIEM-------------------------AREHDSKVLIE 222
Query: 601 GNSRWVEITVGVI-GKCGSM--HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
R EI VI G+ G+ S+ + V + E K+ G AS+
Sbjct: 223 QGIRGREIECSVIDGRHGAAPRASVPGEIVVHDPDGFYDFEAKYLSGE------QKASVQ 276
Query: 658 STEALDKC-KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-- 710
+ LD ++R++ +A L EG +RID FV D G V + E NT+PG T S+
Sbjct: 277 AHANLDDATRRRVQKVAIKAFQVLGCEGLARIDTFVTPD-GAVYVNEPNTMPGFTRSSGF 335
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
L+ QA M Q ++++L ER L
Sbjct: 336 PLMWQASG----MTYAQIVSELIELALERPL 362
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+S+ G + P +++ E E + ++L+ V VKP R GSSIG++
Sbjct: 147 LSEAGVLVGPYVVVRDHEWREDRKAVLKAVSRLEY---PVFVKPARGGSSIGISRVTSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
+ L+ A + E D +V++E + G E V+D G P +P G
Sbjct: 203 EHLETAIEMAREH-DSKVLIEQGIR-GREIECSVIDGRHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A +++ A FQ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P G + + N + G ++S L QAS G +++ I+
Sbjct: 311 FVTPD-----------------GAVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
Length = 356
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 124/313 (39%), Gaps = 85/313 (27%)
Query: 415 WIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
W +LA+ + VF +HG GEDGT+Q LLE + Y G GV+AS MDK
Sbjct: 84 WERLAEFD--AVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDK--------- 132
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDI----WHELTSKLQCKT------LCVKPARDGCS 524
K V L + P V I W+ S+++ + + VKPAR G S
Sbjct: 133 -------PFTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSS 185
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH-----GMIEMPNPPPEILIFEPFVE 579
+GVA + +DL V A ++ +F+R G+++ P+ P
Sbjct: 186 SGVAMVESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQGPDGRP---------- 235
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
V+G+ +V + D E
Sbjct: 236 -----------------------------VASVVGEI--------TVAAESDHDFYDFEA 258
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 699
K+ GT +NL P + +E + + A+ EG +R+D F+ D +++ E
Sbjct: 259 KYLDGTSVNLVPADIPVTLSE---RIRTYAVQAFEAVGCEGLARVDFFLTDDG--LVVNE 313
Query: 700 VNTVPGMTPSTVL 712
+NT+PG TP ++
Sbjct: 314 INTMPGFTPFSMF 326
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V VKP RAGSS GV + D L A + D +V+VE F G E VL
Sbjct: 175 VFVKPARAGSSSGVAMVES-WDDLDAAV-VAARAFDPKVIVEAFARGKRELECGVL---Q 229
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G D PV + E+ + + D +++ KYL V P P+ + IR
Sbjct: 230 GPDGRPVASVVGEITVAAESDHD------FYDFEAKYLDGTSVNL-VPADIPVTLSERIR 282
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGST 199
A F+ +G AR+D +FL V + T G T
Sbjct: 283 TYAVQAFEAVGCEGLARVD-FFLTDDGLVVNEINTMPGFT 321
>gi|204927234|ref|ZP_03218436.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|374999861|ref|ZP_09724202.1| D-ala D-ala ligase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|417355019|ref|ZP_12131295.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|452121565|ref|YP_007471813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204323899|gb|EDZ09094.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|353078079|gb|EHB43838.1| D-ala D-ala ligase [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|353598661|gb|EHC55045.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|451910569|gb|AGF82375.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 306
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DE+L +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEVLV-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|327475199|gb|AEA77194.1| D-alanyl-alanine synthetase A [Exiguobacterium sp. EPVM]
Length = 305
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 130/288 (45%), Gaps = 65/288 (22%)
Query: 423 QATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 481
QA V + A+HG GEDG +QSLLE G+PYTG GV+AS MDK + A G+
Sbjct: 52 QADVVLSALHGKYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKII---FAAAGIR 108
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ D + +V+ W S+ C VKPA++G S G LT+
Sbjct: 109 IARDVLIETGDDIDAKVVE-W---GSEFPC---VVKPAQEGSSNG---------LTI--- 149
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A++E +LR G+ + +L+ E ++ KG
Sbjct: 150 AMDEAMLR---------EGIDKAFACDTAVLV-EQYI---------------------KG 178
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV V+G G+ + +P + + + E K+ G I++ P EA
Sbjct: 179 R----ELTVPVLGNHGA-EAALPVIEIIPKNEFYDYESKYSEGGSIHVCPAELP----EA 229
Query: 662 LDKCKQRIELIAN-ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
L + Q + A+ AL G+SR D F+ ++G I+E NT+PGMTP
Sbjct: 230 LTEEVQTAAIKAHRALGCSGYSRSD-FLISEDGLAYILETNTLPGMTP 276
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD------RVVVELFLEGGSEFTAIV 94
VVKP + GSS G+T+A + ++ EGID V+VE +++ G E T V
Sbjct: 135 VVKPAQEGSSNGLTIAMD--------EAMLREGIDKAFACDTAVLVEQYIK-GRELTVPV 185
Query: 95 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
L PV +++ K+ ++Y KY + + P P +
Sbjct: 186 LGNHGAEAALPV--------------IEIIPKNEFYDYESKYSEGGSI-HVCPAELPEAL 230
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
++ A + LG ++R D FL S E G + N + G
Sbjct: 231 TEEVQTAAIKAHRALGCSGYSRSD--FLIS---------------EDGLAYILETNTLPG 273
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
M S A VG S+ +L I
Sbjct: 274 MTPLSLFPDSARAVGISYGELLERFI 299
>gi|312621719|ref|YP_004023332.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kronotskyensis
2002]
gi|312202186|gb|ADQ45513.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kronotskyensis
2002]
Length = 364
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 133/343 (38%), Gaps = 99/343 (28%)
Query: 420 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 472
K+N+AT VF +HG GEDGT+Q LLE G+PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 473 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLV---------------------------------LAIHEAFLYDTK 215
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 636
IL Q+ N EI V+G V V E G+I+ S
Sbjct: 216 ILI-EQAINAR-------------EIECAVLGN--------DEVFVSEPGEIIPSREFYS 253
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ + + P TE + RI I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDNSSELIIPARLPKEVTEEIKDLAARIYKI---FECCGMARVDFFVDKDTNKVY 310
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
E+NT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEINTIPGFT--SISMYPKLMEFSSIPYSQLIDKLISLAIEK 351
>gi|347819140|ref|ZP_08872574.1| D-alanine--D-alanine ligase [Verminephrobacter aporrectodeae subsp.
tuberculatae At4]
Length = 330
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 125/301 (41%), Gaps = 75/301 (24%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L ++ A FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK
Sbjct: 61 LRRDGYARCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDK------------ 108
Query: 478 LGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLCC 532
T+ K + R + L TP +V E LQ + VKPAR+G + G+++
Sbjct: 109 ----TMTKRIWRAQG-LPTPDWRLVSDAAETAQALQALGAPMIVKPAREGSTIGLSK--- 160
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
V A +C P + + PE+L E F+ D
Sbjct: 161 -------VSAPGQC---APAYQLAARY--------DPEVLC-EQFIAGD----------- 190
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
E T V+G S +L V G+ + F T +
Sbjct: 191 --------------ETTCPVLGAGVSAQALPVVRIVAPEGNYDYQNKYFGDATQYHC--- 233
Query: 653 PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
P+ + E ++ QR+ L A AL G++R D + + + ++E+NT PGMT ++
Sbjct: 234 PSGLPGQE--EQEIQRLVLQAFRALDCRGWARADIMLRASDRQPFLLEINTAPGMTSHSL 291
Query: 712 L 712
L
Sbjct: 292 L 292
>gi|291326269|ref|ZP_06123809.2| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
gi|291315062|gb|EFE55515.1| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
Length = 372
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 175/459 (38%), Gaps = 110/459 (23%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG ++E +VSL S N+ +N N +V CLL + +
Sbjct: 11 VGVIFGGRSTEHEVSLQSAKNI-INGLDRNKFDV--CLLGINKEGQ-------------- 53
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
W + + L + +P R A + R LV G K F +
Sbjct: 54 ---WH-------EYNESDFL---LHGDDPSRIALNTPKRAIA---LVPG-KTSEQFISLE 96
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
A LP +F VHG +GEDG+LQ LL +P+ GPGV+ S
Sbjct: 97 DAKPLPQID--------------VIFPIVHGNLGEDGSLQGLLRMANLPFVGPGVLGSSA 142
Query: 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 521
CMDK T L D G+ ++ +LK +E T L +KPA
Sbjct: 143 CMDKDVTKRLLR---DAGL-----NIAPFITVLKNERATTEYEATVAQLGLPLFIKPANQ 194
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S G++++ + + AL+ L +M
Sbjct: 195 GSSVGISKVSTESE---FYAALDFAFL-------------FDM----------------- 221
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+++ + + EI V+G + S + + +S + K+
Sbjct: 222 --------------KVLIESAVKGREIECAVLGNEEPLASPCGEIVLHDS--FYAYHTKY 265
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 701
G ++ P + DK ++ AL G SR+D F+ +N +V+I E+N
Sbjct: 266 IDENGASVVAPAQ--LDAAVSDKIREIALSAYRALNCSGMSRVDVFL-TENNDVVINEIN 322
Query: 702 TVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
T+PG T + ++ L +Q M Q ++++LG E+F
Sbjct: 323 TLPGFT--NISMYPKLWQQAGMTYPQLISRLIELGIEKF 359
>gi|259907419|ref|YP_002647775.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae Ep1/96]
gi|387870169|ref|YP_005801539.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae DSM 12163]
gi|224963041|emb|CAX54524.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae Ep1/96]
gi|283477252|emb|CAY73165.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae DSM 12163]
Length = 306
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 134/333 (40%), Gaps = 91/333 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK----------- 465
+L +E FIA+HG GEDGTLQ +LE +PYTG GVMAS MDK
Sbjct: 49 RLNEEGFDKAFIALHGRGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCG 108
Query: 466 --VATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
V+ +ALN + D G ++ + + L P L VKP+R+G
Sbjct: 109 LPVSPFIALNRVQMDAG---LDAQMMTSINALGLP----------------LFVKPSREG 149
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G++R+ +L + + E F DE
Sbjct: 150 SSVGISRVNQTSEL---------------------------------QAALVEAFRHDDE 176
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
+L + + E TVGV+G ++PS+ ++ S + + K+
Sbjct: 177 VLVEAFLSGP--------------EYTVGVLGS-----DILPSIRIQTSSEFYDYDAKYI 217
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
P S +S + + ++ AL G+ R+D + D G ++EVNT
Sbjct: 218 SDETQYFCP---SGLSADQETELRELTIAAWRALGCSGWGRVDVMMGAD-GHFYLLEVNT 273
Query: 703 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
PGMT +++ A +Q M Q ++L+L
Sbjct: 274 SPGMTSHSLVPMAA--KQAGMTFSQLVVRILEL 304
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
+ VKP+R GSS+G++ ++ + + ++E DD V+VE FL G E+T VL
Sbjct: 141 LFVKPSREGSSVGIS----RVNQTSELQAALVEAFRHDDEVLVEAFLS-GPEYTVGVL-- 193
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G D P + + T E ++Y KY+ + + Y P
Sbjct: 194 --GSDILPSIRIQTSSEF--------------YDYDAKYI-SDETQYFCPSGLSADQETE 236
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+RE ++ LG + R+D + + H + ++N GM
Sbjct: 237 LRELTIAAWRALGCSGWGRVD-VMMGADGHFY----------------LLEVNTSPGMTS 279
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A + G + S ++ I+
Sbjct: 280 HSLVPMAAKQAGMTFSQLVVRIL 302
>gi|397166775|ref|ZP_10490219.1| D-alanine--D-alanine ligase B [Enterobacter radicincitans DSM
16656]
gi|396091863|gb|EJI89429.1| D-alanine--D-alanine ligase B [Enterobacter radicincitans DSM
16656]
Length = 306
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 138/337 (40%), Gaps = 99/337 (29%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + + FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A
Sbjct: 49 RLKEMGFSKAFIALHGRGGEDGTLQGLLELIDMPYTGSGVMASAISMDKLRSKL-LWQGA 107
Query: 477 DLGVL------------TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V ++ D ++ D L P++ VKP+R+G S
Sbjct: 108 GLPVAPWVALERSEFESGLSFDDIQRIDELGLPVI----------------VKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ ++DL H + + F DE+L
Sbjct: 152 VGMSKVEKSDDL----------------------HAALAL-----------AFQHDDEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G + ++PS+ ++ +G E K+
Sbjct: 179 I-----------------EKWLSGPEFTVALLG-----NEILPSIRIQPAGIFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRIDAFVNVDNGEVLII 698
P + AL L+ A +L G+ RIDA ++ D G+ ++
Sbjct: 217 LSDETKYFCPSGLEVEREAALQS------LVLKAWRLLGCRGWGRIDAMLDSD-GQFYLL 269
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
E NT PGMT +++ A Q + Q ++LDL
Sbjct: 270 EANTSPGMTSHSLVPMAA--RQAGLSFSQLVVRILDL 304
>gi|417932922|ref|ZP_12576259.1| D-ala D-ala ligase N-terminal-like domain protein
[Propionibacterium acnes SK182B-JCVI]
gi|340774166|gb|EGR96655.1| D-ala D-ala ligase N-terminal-like domain protein
[Propionibacterium acnes SK182B-JCVI]
Length = 327
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 72/303 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L + A VF +HGG+GE+G L +L+ G+PY G G + DK S+A +A
Sbjct: 62 LRANDSAVVFPMLHGGLGENGALLEVLQLMGIPYVGSGPATCRISFDK---SIASRAVAA 118
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC--------VKPARDGCSTGVAR 529
GV T + + P DI+ EL ++ +++ VKPAR G S GV +
Sbjct: 119 AGVATPQQ--------VALPH-DIFRELGARTVIRSITESFGLPVIVKPARGGSSLGVTK 169
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
+ +DL P + + A+ +M ++ E F+ E+ +
Sbjct: 170 IDDIDDL---------------PQAIANAYAYDDM-------VVVEEFIAGTELAIGMIT 207
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
T++ ++P+V V+ G + + GG L
Sbjct: 208 TSEGT--------------------------RVLPAVEVRPVGGVYDYSAMYTGGE-TRL 240
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
T P + +S E + + ++ L G SR+DA V+ ++G + +E PGMT +
Sbjct: 241 TAP--ADISDEVAQAADEMVRVVQKELYFSGISRVDAIVD-ESGRPVFLEAGAAPGMTAT 297
Query: 710 TVL 712
+++
Sbjct: 298 SLV 300
>gi|323142001|ref|ZP_08076852.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413533|gb|EFY04401.1| D-ala D-ala ligase protein [Phascolarctobacterium succinatutens YIT
12067]
Length = 315
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 135/331 (40%), Gaps = 66/331 (19%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
EL + INE L N VF AVHG GEDG LQS+LEA G+PYTG GV+AS MD
Sbjct: 45 ELNPSNLINE---LRDMNAKVVFNAVHGMYGEDGRLQSILEAAGIPYTGCGVLASAVSMD 101
Query: 465 KVATSLALNHLADLGVLTINKDVRRKEDL--LKTPIVDIWHELTSKLQCKTLCVKPARDG 522
K AT +L G+ T + K D L+T I E + +K A G
Sbjct: 102 KSATK---RYLQSAGIPTAPCMIINKRDAGDLQTLAEKIISEFG-----LPVVIKAATQG 153
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S GV A+++ V ALEE
Sbjct: 154 SSIGVVIPKTAQEV---VPALEEAF----------------------------------- 175
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
K ++ ++ + + E+T+ ++ + G L P + + K+
Sbjct: 176 ---------KYSENVLAEKCIKGKELTISIMEENGEPKPL-PVIWIAPHSGAYDFHSKYT 225
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
G P P +T + K + L L G +R+DA + ++G ++E NT
Sbjct: 226 KGATDYHCPAPFDEKTTAYIQKIAVETYKL---LGLSGVARVDAMLGDEDGVAYVLEANT 282
Query: 703 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 733
VPGMT +T L+ +A + +P + K+L
Sbjct: 283 VPGMT-ATSLVPKAAAAVGISFP-ELCEKIL 311
>gi|152987968|ref|YP_001346283.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
gi|150963126|gb|ABR85151.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7]
Length = 346
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/438 (25%), Positives = 169/438 (38%), Gaps = 138/438 (31%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG + ER VS+ SG V L++ EV ++D +SG
Sbjct: 7 KVAVLFGGSSEERDVSIASGAQVIQALRSAGH-EVL------AVDTASG----------- 48
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
L+ +LA+ ++ + PD + ++ +GL G
Sbjct: 49 ----------LLGAEEERRLLASKVKEVPPDSDSLA------IIRSGKQGLLSAGELAGV 92
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ F+A+HGG GEDGTLQ+LL+A G YTG G +AS
Sbjct: 93 DV-----------------------FFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASA 129
Query: 461 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK VA L L GV T + L P + E + L VKP
Sbjct: 130 MAMDKDVAKRLFLAA----GVETAS--------WLMAPASE---EAVREQLGFPLVVKPN 174
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G + G S H E+ +P +E
Sbjct: 175 SQGSTVG----------------------------LSIVHSQAEL----------QPAIE 196
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLE 638
+ D +M + E+TVGV+ +P + G ++ E
Sbjct: 197 L---------AGRYGDEVMLERFVAGREVTVGVLDD-----QALPVGEILLGGQEVFDYE 242
Query: 639 EKFQGGTGINLTP---PPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGE 694
K+Q G + P PPA ++ EA QR+ L + AL+L G+SR D F + G
Sbjct: 243 HKYQAGAVREVFPADLPPA--VAAEA-----QRLALKVHRALKLSGYSRTD-FRLDEQGR 294
Query: 695 VLIIEVNTVPGMTPSTVL 712
+ +EVNT+PGMT +++L
Sbjct: 295 LWCLEVNTLPGMTATSLL 312
>gi|227113984|ref|ZP_03827640.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 306
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 134/325 (41%), Gaps = 77/325 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 50 LKEEGFTKVFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGL 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
+ D R+ + ++ + L L VKP+R+G S G++++ +L
Sbjct: 110 PVSPYVALDRRQYSETAANALLAKFTHL-----GLPLIVKPSREGSSVGMSKVNTLSELP 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
ALEE F D+IL
Sbjct: 165 A---ALEEA------------------------------FRHDDDILI------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G ++PS+ ++ +G E K+ L+
Sbjct: 180 -----EKWLSGPEYTVAILGD-----DVLPSIRIQPAGTFYDYEAKY-------LSDDTQ 222
Query: 655 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
+ D +Q + +A A+ G+ R+D ++ D G ++EVNT PGMT +
Sbjct: 223 YFCPSGLPDDQEQALAGLAMAAYRAVGCSGWGRVDFMLDSD-GAFYLLEVNTSPGMTSHS 281
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDL 735
++ A Q + Q K+L+L
Sbjct: 282 LVPMAA--RQRGLTFSQLVVKILEL 304
>gi|148546755|ref|YP_001266857.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
gi|148510813|gb|ABQ77673.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
Length = 304
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 125/312 (40%), Gaps = 70/312 (22%)
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
I+ E+ E + L VF+A+HGG GE+G Q+ LE G+PY GP AS
Sbjct: 35 ISHEIFTISDYRELLSLDLAKFTRVFLALHGGFGENGMAQAYLEGLGIPYNGPSPQASAI 94
Query: 462 CMDKVATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
CMDK+ T H+A LG+ N + D D+ E S+ VKP R
Sbjct: 95 CMDKLLT----KHIARGLGINVANYLYSKNGD-------DVCFEEISERLGTPCIVKPNR 143
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
+GCS GV+ + DL + L+ N+ ++ H I + E F+
Sbjct: 144 EGCSFGVSLV---RDL--------KADLQPAINAAAKFHTGI----------LIEEFISG 182
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
E + C S +P TV+ D S + K
Sbjct: 183 PE------------------------------LSVCYLNKSTLPIYTVEFESDFFSYDAK 212
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
F T N T SI+ IA AL+L+ F R D V+ N E +IE+
Sbjct: 213 FI-STKTNAT---LSILDRSTHQLVTNYCSAIAEALELDYF-RADFIVH--NTEPYLIEL 265
Query: 701 NTVPGMTPSTVL 712
NT+PG+T ++
Sbjct: 266 NTLPGLTSHSLF 277
>gi|161504748|ref|YP_001571860.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866095|gb|ABX22718.1| hypothetical protein SARI_02871 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 306
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 129/316 (40%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L G+L
Sbjct: 58 AFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQ---GAGLLVAPW 114
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+ K + E +++ L VKP R+G S G+ K +
Sbjct: 115 FALTRAGFEK----GLSEEQKARISALGLPLIVKPGREGSSVGM------------TKVV 158
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
EE N+ A + F DE+L
Sbjct: 159 EE-------NALQGALAL--------------AFQHDDEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ +G E K+ P
Sbjct: 181 KWLCGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEA 235
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
AL Q + L A AL +G+ RID +N D G+ ++E NT PGMT +++ A
Sbjct: 236 AL----QLLVLQAWKALGCKGWGRIDVMLNSD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 289 QAGMSFSQLVVRILEL 304
>gi|417472293|ref|ZP_12168045.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353654696|gb|EHC95901.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
Length = 306
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 131/314 (41%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|410696652|gb|AFV75720.1| D-alanine--D-alanine ligase [Thermus oshimai JL-2]
Length = 320
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 115/305 (37%), Gaps = 82/305 (26%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LE G PY G GV AS CMDK ++
Sbjct: 76 VVFPLLHGPFGEDGTVQGFLELLGKPYVGAGVAASALCMDK----------------DLS 119
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
K V ++ L P V ++ T + + VKPA G S GV R AED
Sbjct: 120 KRVLQQAGLPVVPWVALYRGETPLIPFEPPYFVKPANTGSSIGVRR---AED-------- 168
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ E +E L + ++ A G
Sbjct: 169 ---------------------------------YGELEEALAEAFRYDRKAVVEKALGGV 195
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
R E+ VGV+G S P ++ E K+ G L P P + E +
Sbjct: 196 R--ELEVGVLGNVFGQAS--PVGEIRYQAPFYDYETKYTPGRAELLIPAPLDPGTAETIQ 251
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+ + + L + G +R+D F+ GEV + EVNT+PG TP++ M
Sbjct: 252 EMALKAYRV---LGIRGMARVDFFLA--EGEVYLNEVNTIPGFTPTS------------M 294
Query: 724 YPHQF 728
YP F
Sbjct: 295 YPRLF 299
>gi|425078382|ref|ZP_18481485.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425089014|ref|ZP_18492107.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405590243|gb|EKB63777.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405600152|gb|EKB73319.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 306
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 139/335 (41%), Gaps = 95/335 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K+ FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L A
Sbjct: 49 QLKKQGFKKAFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKW-LWQGA 107
Query: 477 DLGV-----LT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V LT ++ DV ++ L P++ +KP+R+G S
Sbjct: 108 GLPVAPWVALTRAQFAAGLSTDVEQQIAALGLPVI----------------IKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ + DL ++ + A F +E+L
Sbjct: 152 VGMSKVSESCDLA---------------SALALA------------------FQHDNEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 179 V-----------------EKWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
P A + Q + L A N L +G+ RID ++ D G+ ++E
Sbjct: 217 LSDETQYFCPG----FEDPARESAIQNLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEA 271
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
NT PGMT +++ A Q M Q ++LDL
Sbjct: 272 NTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
Length = 375
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 164/431 (38%), Gaps = 115/431 (26%)
Query: 284 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 343
+I+GG +SE +VSL + ++ + A N EVTP +
Sbjct: 10 IIYGGKSSEHEVSLRTAMSIMQAVDA-NKYEVTPVYV----------------------- 45
Query: 344 VWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIA 403
L S V T L IEA+ S+ + +L K S F
Sbjct: 46 --QLDGSWVTGETLAGQLPDKIEALRLSAKTPVSNEATETGQELAVTSKSGSLF------ 97
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
++NE + + VF VHG GEDGT+Q LLE +PY G GVMAS M
Sbjct: 98 -------AMNEQMDV-------VFPVVHGPFGEDGTIQGLLELANIPYVGTGVMASAVGM 143
Query: 464 DK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
DK V L + +G+L + +D D+ + +L VKP
Sbjct: 144 DKWMMKTVFAQAGLPQVKYVGLL--RSQWEKGQD-------DVMDRIERELGYPCF-VKP 193
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
A G S G+ + E+L AL+ F R LI E FV
Sbjct: 194 ANMGSSVGINKAKNREELK---HALDVAA------KFDRR-------------LIVEEFV 231
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+ E+ +GV+G M S++ V + + E
Sbjct: 232 QVR-------------------------ELEIGVLGNEELMTSVVGEVIAAK--EFYDYE 264
Query: 639 EKFQG-GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
K++G GT +++ +S + + KQ + AL G SR+D F + N ++ I
Sbjct: 265 AKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQ----ALDGSGLSRVDFFWDEKNDKLYI 320
Query: 698 IEVNTVPGMTP 708
EVNT+PG TP
Sbjct: 321 NEVNTMPGFTP 331
>gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
gi|386745448|ref|YP_006218627.1| D-alanine--D-alanine ligase [Providencia stuartii MRSN 2154]
gi|188021357|gb|EDU59397.1| D-ala D-ala ligase N-terminal domain protein [Providencia stuartii
ATCC 25827]
gi|384482141|gb|AFH95936.1| D-alanine--D-alanine ligase [Providencia stuartii MRSN 2154]
Length = 367
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/463 (22%), Positives = 173/463 (37%), Gaps = 118/463 (25%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG ++E +VSL S N+ + + CL+ +
Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNI---INGLDRDRFDVCLIGIN-----------------K 45
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
+ W H +E I A +P R A ++ R+ + + G K F +
Sbjct: 46 QGHW---------HEYDEA-DFLIHANDPARIALSTPKRSIAI---IPG-KTTQQFISLE 91
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
A LP +F VHG +GEDG+LQ LL +P+ GPGV+ S
Sbjct: 92 DAQPLPQID--------------VIFPIVHGNLGEDGSLQGLLRMANLPFVGPGVLGSSA 137
Query: 462 CMDKVATSLALN----HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517
CMDK T L H+A LT + +E K L +K
Sbjct: 138 CMDKDITKRLLRDAGLHVAPFITLTASDRTEAN------------YEAVVKQLGLPLFIK 185
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577
PA G S G++++ + + AL+ L +M
Sbjct: 186 PANQGSSVGISKVTNESE---FKAALDFAFL-------------FDM------------- 216
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
+++ + + EI V+G + S + + +S +
Sbjct: 217 ------------------KVLIESAVKGREIECAVLGNEQPLASPCGEIVLHDS--FYAY 256
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
K+ G ++ P + + E DK ++ AL G SR+D F+ DN V+I
Sbjct: 257 HTKYIDENGASVVAP--ADLDVEVSDKIREIALQAYRALNCSGMSRVDVFLTEDN-HVII 313
Query: 698 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
E+NT+PG T + ++ L +Q M ++++LG E++
Sbjct: 314 NEINTLPGFT--NISMYPKLWQQGGMTYQALISRLIELGIEKY 354
>gi|161612474|ref|YP_001586439.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|416572555|ref|ZP_11767300.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|417378482|ref|ZP_12147125.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|417523989|ref|ZP_12184146.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|161361838|gb|ABX65606.1| hypothetical protein SPAB_00164 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|353620347|gb|EHC70479.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353670803|gb|EHD07287.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|363573107|gb|EHL56994.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
Length = 306
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 131/314 (41%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|168234894|ref|ZP_02659952.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194734683|ref|YP_002113148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|416422947|ref|ZP_11690525.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416429585|ref|ZP_11694647.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416439534|ref|ZP_11700253.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416446791|ref|ZP_11705303.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416454981|ref|ZP_11710606.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416458189|ref|ZP_11712791.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416469128|ref|ZP_11718341.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416474064|ref|ZP_11719945.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416494636|ref|ZP_11728263.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416495582|ref|ZP_11728632.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416508770|ref|ZP_11736217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416522790|ref|ZP_11740678.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416526275|ref|ZP_11742329.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416533283|ref|ZP_11746251.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416547329|ref|ZP_11754501.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416555436|ref|ZP_11758921.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416564781|ref|ZP_11763505.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416578002|ref|ZP_11770222.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416588092|ref|ZP_11776628.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416592465|ref|ZP_11779275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416600460|ref|ZP_11784407.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416608915|ref|ZP_11789647.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416612850|ref|ZP_11791787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416620099|ref|ZP_11795480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416627908|ref|ZP_11799228.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416644893|ref|ZP_11807107.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416652349|ref|ZP_11811670.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416657597|ref|ZP_11813813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416667699|ref|ZP_11818428.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416682929|ref|ZP_11824101.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416694681|ref|ZP_11827277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416708157|ref|ZP_11833019.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416710422|ref|ZP_11834527.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416717436|ref|ZP_11839688.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416726546|ref|ZP_11846607.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416729268|ref|ZP_11847872.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416739414|ref|ZP_11853817.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416748068|ref|ZP_11858470.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416754311|ref|ZP_11861289.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763483|ref|ZP_11867157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416767733|ref|ZP_11870109.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417448742|ref|ZP_12162662.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|417515271|ref|ZP_12178856.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|417536574|ref|ZP_12189692.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|418483853|ref|ZP_13052858.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418491447|ref|ZP_13057963.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418495041|ref|ZP_13061486.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418501361|ref|ZP_13067750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418504081|ref|ZP_13070440.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418508740|ref|ZP_13075042.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418513520|ref|ZP_13079750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418524176|ref|ZP_13090163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|194710185|gb|ACF89406.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197291932|gb|EDY31282.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322615951|gb|EFY12868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620735|gb|EFY17595.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623913|gb|EFY20750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627361|gb|EFY24152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322630668|gb|EFY27432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638112|gb|EFY34813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640598|gb|EFY37249.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647739|gb|EFY44224.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648088|gb|EFY44555.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656880|gb|EFY53166.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657410|gb|EFY53682.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663729|gb|EFY59929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666562|gb|EFY62740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672279|gb|EFY68391.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676409|gb|EFY72480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322679498|gb|EFY75543.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686173|gb|EFY82157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195017|gb|EFZ80203.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200074|gb|EFZ85161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201105|gb|EFZ86174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323212246|gb|EFZ97070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216551|gb|EGA01277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219900|gb|EGA04378.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323225820|gb|EGA10040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228638|gb|EGA12767.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236748|gb|EGA20824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239751|gb|EGA23798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242201|gb|EGA26230.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249375|gb|EGA33291.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323252292|gb|EGA36143.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256618|gb|EGA40348.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262987|gb|EGA46537.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265472|gb|EGA48968.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323271740|gb|EGA55158.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|353637792|gb|EHC83518.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353655744|gb|EHC96673.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|353670098|gb|EHD06809.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|363551228|gb|EHL35547.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363552060|gb|EHL36367.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363558340|gb|EHL42533.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363560253|gb|EHL44400.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363568567|gb|EHL52545.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363570128|gb|EHL54066.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366060082|gb|EHN24347.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366060377|gb|EHN24640.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366061568|gb|EHN25813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366066875|gb|EHN31033.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366072409|gb|EHN36501.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366079230|gb|EHN43217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366081881|gb|EHN45821.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366826953|gb|EHN53863.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372207838|gb|EHP21335.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 306
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 131/314 (41%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|398817983|ref|ZP_10576582.1| D-alanine--D-alanine ligase [Brevibacillus sp. BC25]
gi|398028781|gb|EJL22284.1| D-alanine--D-alanine ligase [Brevibacillus sp. BC25]
Length = 427
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 168/431 (38%), Gaps = 115/431 (26%)
Query: 284 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 343
+I+GG +SE +VSL + ++ + A N EVTP + +D S
Sbjct: 62 IIYGGKSSEHEVSLRTAMSIMQAVDA-NKYEVTPVYV--QLDGS---------------- 102
Query: 344 VWSLPYSLVLRHTTEEVLAACIEAIEPDR-AAFTSHLRNQVVNDLVEGLKKHSWFTGFDI 402
W T E LA + PD+ A + + + E ++ I
Sbjct: 103 -W----------VTGETLAGQL----PDKIEALRLSAKTPAITETTETGQE------LAI 141
Query: 403 ADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 462
A + ++NE + + VF VHG GEDGT+Q LLE +PY G GVMAS
Sbjct: 142 ASKQGSLFAMNEQMDV-------VFPVVHGPFGEDGTIQGLLELANIPYVGTGVMASAVG 194
Query: 463 MDK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517
MDK V L + +G+L + +D D+ + +L VK
Sbjct: 195 MDKWMMKTVFAQAGLPQVKYVGLL--RSQWEKGQD-------DVMDRIERELGYPCF-VK 244
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577
PA G S G+ + E+L ALE F R LI E F
Sbjct: 245 PANMGSSVGINKAKNREELK---HALEVA------AKFDRR-------------LIVEEF 282
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
V+ E+ +GV+G M S++ V + +
Sbjct: 283 VQAR-------------------------ELEIGVLGNEELMTSVVGEVIAAK--EFYDY 315
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
E K++ G G L+ P +I+ ++ + + AL G SR+D F + N ++ I
Sbjct: 316 EAKYK-GAGTELSIP--AIVPAHVSEQIAEIAKKAFQALDGSGLSRVDFFWDEKNDKLYI 372
Query: 698 IEVNTVPGMTP 708
EVNT+PG TP
Sbjct: 373 NEVNTMPGFTP 383
>gi|269137997|ref|YP_003294697.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
gi|387866731|ref|YP_005698200.1| D-alanine--D-alanine ligase [Edwardsiella tarda FL6-60]
gi|267983657|gb|ACY83486.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
gi|304558044|gb|ADM40708.1| D-alanine--D-alanine ligase B [Edwardsiella tarda FL6-60]
Length = 306
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 126/313 (40%), Gaps = 69/313 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ S + A L V
Sbjct: 58 VFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKL-RSKQVWQAAGLPVAPYVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + D + +D E+ L VKP+R+G S G++++
Sbjct: 117 ISREQFD--EGLTMDTLREIND--LGLPLIVKPSREGSSVGMSKVS-------------- 158
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
P F A + E DEIL +W
Sbjct: 159 -----EPCEFDPA--------------LVEALRHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV IG ++PS+ ++ +G E K+ P S +AL
Sbjct: 183 LAGPEYTVAFIG-----DEILPSIRIQAAGAFYDYEAKYLSDKTEYFCPSGLSDEQEQAL 237
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+R AL G+ R+D + GE ++EVNT PGMT +++ A Q
Sbjct: 238 AALVRR---AYKALGCSGWGRVDVMQDA-AGEFCLLEVNTAPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 292 MRFSQLVVRILEL 304
>gi|379058035|ref|ZP_09848561.1| D-alanine--D-alanine ligase [Serinicoccus profundi MCCC 1A05965]
Length = 377
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 132/323 (40%), Gaps = 69/323 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-VATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE +PY G GVMAS MDK V L + +G T+
Sbjct: 114 VFPLLHGPFGEDGTIQGLLELADLPYVGCGVMASAAMMDKHVMKVLFASAGLPVGPYTVI 173
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
D + + D + + VKPAR G S GV ++ EDL V +
Sbjct: 174 TDRQWQRDRAAALDAASALQF-------PVFVKPARAGSSVGVVKVDRPEDLEVAIDK-- 224
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+R H P++L+ Q
Sbjct: 225 -----------ARDHD--------PKVLV-------------EQGIEGR----------- 241
Query: 605 WVEITVGVIGKCGSMH---SLMPSVTVKESGDILSLEEKFQGGTGINLTPP---PASIMS 658
EI GV+G GS S + V D E K+ G+ +T P PA I
Sbjct: 242 --EIECGVLGGHGSEPPRISECGEIVVTGGHDFYDFEAKYLDEAGVQITAPADIPADI-- 297
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
E + + +A+A EG SR+D FV GEV++ E+NT+PG TP + + QA +
Sbjct: 298 REEIHRIAALAFEVADA---EGLSRVDCFVT-PRGEVVLNEINTMPGFTPYS-MYPQAWA 352
Query: 719 EQPPMYPHQFFRKVLDLGSERFL 741
YP + +++ L ER L
Sbjct: 353 ASGVSYP-ELVDELITLALERPL 374
>gi|406917221|gb|EKD56060.1| hypothetical protein ACD_58C00306G0009 [uncultured bacterium]
Length = 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 112/449 (24%), Positives = 178/449 (39%), Gaps = 141/449 (31%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V +IFGG + E +VSL SG N++ N+ N P + S D
Sbjct: 6 KVGIIFGGLSLESEVSLTSGRNLYNNI---NKTLFDPIAIYISRD--------------- 47
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
W LP +L++R+TT+E
Sbjct: 48 -EQFWQLPETLIIRNTTKE----------------------------------------- 65
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
I + L + + E+ KLA F+ HG G+DG+LQ L+E VPYTG GV+++
Sbjct: 66 -IEERLEAKAILIEYEKLASIID-IAFLVTHGKFGDDGSLQGLMELLHVPYTGSGVLSAA 123
Query: 461 TCMDKVATSLALNHLADL--GVLTINKDVRRKEDLLKTPIVDIWH----ELTSKLQCK-- 512
MDK DL ++ ++KD+ + E L I+D W + + ++ K
Sbjct: 124 LGMDK-----------DLQRKLIGLDKDINQPE-YLTVNIID-WQANQDRVINSIEQKFV 170
Query: 513 -TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 571
L KPAR+G + GV + ++ VK SF +
Sbjct: 171 YPLVSKPAREGSTIGVETINSKDEFINKVK-----------KSFIYDNK----------- 208
Query: 572 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES 631
+I EP+++ E FS + R +L+P+ T+ S
Sbjct: 209 IIIEPYLKGRE--FSCMVVGGDKPR------------------------ALLPTETI-HS 241
Query: 632 GDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVNV 690
+I + +EK+ G +TP E + K QR L L ++RID FV +
Sbjct: 242 NEIFTYDEKYLPGASEKITPMDID----ENIIKEIQRQSLACYIILGCSDYARIDGFV-L 296
Query: 691 DNGEVLIIEVNTVP--GMTPSTVLIHQAL 717
DN +V+I + N+ G+ PS+ HQA+
Sbjct: 297 DNNKVVITDPNSAASTGLGPSSWTWHQAV 325
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+V KP R GS+IGV + + K K + D+++++E +L+G EF+ +V+
Sbjct: 173 LVSKPAREGSTIGVETINSKDEFINKVKKSFI--YDNKIIIEPYLKG-REFSCMVV---- 225
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINS 157
G D P LLPTE + IF Y KYLP ++++ TP +I
Sbjct: 226 GGD-KPRALLPTET----------IHSNEIFTYDEKYLPGASEKI---TPMDIDENIIKE 271
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I+ + + LG D+ARIDG+ L ++ V + + +G+
Sbjct: 272 IQRQSLACYIILGCSDYARIDGFVLDNNKVVITDPNSAAS---------------TGLGP 316
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
+S+ + QA K G+S + + +I
Sbjct: 317 SSWTWHQAVKAGYSVKDFITELI 339
>gi|293189634|ref|ZP_06608351.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
gi|292821372|gb|EFF80314.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
Length = 378
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 114/285 (40%), Gaps = 58/285 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q L E GV Y G GV +S MDK T L A + V
Sbjct: 116 VFPLLHGPYGEDGTIQGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLA-AAGIDVGRWEL 174
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R+ D T +D L + VKP R G S G++R+ C EDL V +K
Sbjct: 175 VTARQWDTDATACMDRIEGLGFP-----VFVKPCRAGSSVGISRVTCREDLPVAIK---- 225
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
E N P I++ ST+
Sbjct: 226 -----------------EAANHDPRIIV-------------EASTSGR------------ 243
Query: 606 VEITVGVIGKCGSMHSLMPSV--TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E+ GV+G S + V G+ E K+ + L+ P + ++ E D
Sbjct: 244 -EVECGVLGSRSDWRSGTAPLGEIVIPEGEFYDYEHKYVDDI-VGLSCP--ADVAPEYAD 299
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + +AL+ EG +R+D F + V+I EVNT+PG TP
Sbjct: 300 RIRATAWRAFDALECEGLARVDFFFDEATDSVIINEVNTMPGFTP 344
>gi|393759796|ref|ZP_10348608.1| D-alanine--D-alanine ligase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161608|gb|EJC61670.1| D-alanine--D-alanine ligase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 316
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 117/303 (38%), Gaps = 64/303 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+LA+ VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T HL
Sbjct: 52 ELAQAGFDRVFIALHGRYGEDGTLQGALEWLGIPYTGSGVMASSLAMDKIMTKHVWQHLG 111
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L TP G A+L +
Sbjct: 112 -----------------LPTP----------------------------GFAQLDHVSQV 126
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
V+ L L+ PP+ S G++ + + FE + D ++ + Q
Sbjct: 127 AGAVERLGVPLIMKPPHEGSTV-GVVRVDRADQAVAAFETAMHYDTVVLAEQFI------ 179
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
R E+TV +IG+ G +P + + E K+ P S
Sbjct: 180 -------RGRELTVPIIGQ-GEQARALPVIDIVAPQGNYDFEHKYYSDETQYFCPADLSP 231
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
T + R NAL EG+ R D ++ N ++E+NT PGMT +++ A
Sbjct: 232 ELTAHIQDLSVR---AFNALGCEGWGRADFMLDEQN-RPWLLEMNTSPGMTSHSLVPMAA 287
Query: 717 LSE 719
+E
Sbjct: 288 KAE 290
>gi|403060024|ref|YP_006648241.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807350|gb|AFR04988.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 306
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 134/325 (41%), Gaps = 77/325 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E +FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 50 LKEEGFTKIFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGL 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
+ D R+ + ++ + L L VKP+R+G S G++++ +L
Sbjct: 110 PVSPYVALDRRQYSETAANALLAKFTHL-----GLPLIVKPSREGSSVGMSKVNTLSELP 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
ALEE F D+IL
Sbjct: 165 A---ALEEA------------------------------FRHDDDILI------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G ++PS+ ++ +G E K+ L+
Sbjct: 180 -----EKWLSGPEYTVAILGD-----DVLPSIRIQPAGTFYDYEAKY-------LSDDTQ 222
Query: 655 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
+ D +Q + +A A+ G+ R+D ++ D G ++EVNT PGMT +
Sbjct: 223 YFCPSGLPDDQEQALAGLAMAAYRAVGCSGWGRVDFMLDSD-GAFYLLEVNTSPGMTSHS 281
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDL 735
++ A Q + Q K+L+L
Sbjct: 282 LVPMAA--RQRGLTFSQLVVKILEL 304
>gi|283835154|ref|ZP_06354895.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
gi|291069454|gb|EFE07563.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
Length = 306
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R + + + D EL +K+ L VKP+R+G S G+++ +
Sbjct: 117 LTRAE---FEKGLSD---ELVTKISALGLPLIVKPSREGSSVGMSK-------------V 157
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
EE N+ A + F +E+L
Sbjct: 158 EE------QNALQGALAL--------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 181 KWLSGPEFTVALLGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---AGLEAE 232
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ ++ + AL +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEAQLQELVLKAWTALGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
+ Q ++L+L
Sbjct: 290 AGLSFSQLVVRILEL 304
>gi|422014310|ref|ZP_16360924.1| D-alanine--D-alanine ligase [Providencia burhodogranariea DSM
19968]
gi|414101431|gb|EKT63031.1| D-alanine--D-alanine ligase [Providencia burhodogranariea DSM
19968]
Length = 367
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/467 (23%), Positives = 178/467 (38%), Gaps = 126/467 (26%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG ++E +VSL S N+ +N N +V CL+ G+D
Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNI-INGLDRNKFDV--CLI--------GID---------K 45
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
W H E + A +P R A + R+ + + G K F +
Sbjct: 46 EGHW---------HEYNEA-DFLVHANDPARIALNTPKRSIAI---IPG-KTTQQFISLE 91
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
A LP +F VHG +GEDG+LQ LL +P+ GP V+ S
Sbjct: 92 DAQPLPQID--------------VIFPIVHGNLGEDGSLQGLLRMANLPFVGPSVLGSSA 137
Query: 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 513
CMDK T K + R L P + I S + ++
Sbjct: 138 CMDKDVT----------------KRLLRDSGLQIAPFITITTTGRSTINYESVVKQLGLP 181
Query: 514 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 573
L +KPA G S G++++ E+ T AL+ L
Sbjct: 182 LFIKPANQGSSVGISKVTNQEEFTA---ALDFAFL------------------------- 213
Query: 574 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 633
F+ +++ + + EI V+G SL + + S
Sbjct: 214 FDV-------------------KVLIESTVKGREIECAVLGNDQPQASLCGEIVLHNS-- 252
Query: 634 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 693
+ K+ G ++ P + +S + DK ++ AL G SR+D F+ DN
Sbjct: 253 FYAYHTKYIDENGASVVAP--ADLSVDISDKIREVALQAYRALNCCGMSRVDVFLTEDN- 309
Query: 694 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
+++I E+NT+PG T + ++ L ++ M + ++++LG E++
Sbjct: 310 QIVINEINTLPGFT--NISMYPKLWQKSGMTYQELITRLIELGIEKY 354
>gi|256821916|ref|YP_003145879.1| D-alanine--D-alanine ligase [Kangiella koreensis DSM 16069]
gi|256795455|gb|ACV26111.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069]
Length = 312
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 127/297 (42%), Gaps = 83/297 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL---------ALNHLA 476
V+ A+HG GEDG +Q+ L+ G+PYTG GVMAS MDK+ T L A + +
Sbjct: 62 VWNALHGRGGEDGVIQAHLQLLGLPYTGSGVMASAIAMDKLRTKLIWQAMSYPVAKHRML 121
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ GVLTI + ED+L + VKP R+G S G+A+ A++
Sbjct: 122 NTGVLTI----EQAEDVLAD-------------MNDCVMVKPIREGSSVGMAK---ADNA 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
V+A+E + R ++ E +++ +
Sbjct: 162 KALVEAVENA------KQYDRE-------------VMLEQWIDGE--------------- 187
Query: 597 LMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TV ++ GK +PS+ VK + K+Q + + P S
Sbjct: 188 ----------EYTVSILNGKA------LPSIRVKTPNTFYDFQAKYQSQSTEYVCP---S 228
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ E + + + AL EG+ R+D G L++EVNTVPGMT ++++
Sbjct: 229 GLNDEDEAELAELSQAAFYALGCEGWGRVDLMRERSTGNWLLLEVNTVPGMTETSLV 285
>gi|429759635|ref|ZP_19292133.1| D-ala D-ala ligase protein [Veillonella atypica KON]
gi|429179596|gb|EKY20843.1| D-ala D-ala ligase protein [Veillonella atypica KON]
Length = 310
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 132/318 (41%), Gaps = 70/318 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLTI 483
VF A+HG GEDG LQ LE +PYTG G+MA M+K + H+ ++
Sbjct: 60 VFNAIHGRYGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISY 119
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
N +++ KED++K ++ SK + +KPA G S GV + + L KA+
Sbjct: 120 NGNLQSKEDIIK--------DIESKFSL-PVVLKPATQGSSIGVTIVKEEDQLA---KAV 167
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E L P IL+ E ++ N
Sbjct: 168 TEALTYDP-------------------ILVVEQYL-----------------------NG 185
Query: 604 RWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
R E TV V+ GK ++ + P SG+ K+ G L P P S T+ +
Sbjct: 186 R--EFTVSVLDGKALAIIEIRP-----HSGE-YDYASKYTAGATDYLVPAPISADMTKEM 237
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
EL+ +Q G R+D + D + ++E NT+PGMT +T L+ +A E
Sbjct: 238 QAIG---ELVYCEVQASGAIRVDVMTD-DKDNMYVLEYNTIPGMT-ATSLVPKAAKEVGI 292
Query: 723 MYPHQFFRKVLDLGSERF 740
+P + +L G +F
Sbjct: 293 DFPELCEKILLTAGYGKF 310
>gi|425303602|ref|ZP_18693418.1| D-alanine--D-alanine ligase 1 [Escherichia coli N1]
gi|408232885|gb|EKI56050.1| D-alanine--D-alanine ligase 1 [Escherichia coli N1]
Length = 306
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 145/317 (45%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + V ++ L + +I S L + VKP+R+G S G+++ AE+ A
Sbjct: 117 LTR-VEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSK-AVAEN------A 162
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L++ LR+ F +E+L
Sbjct: 163 LQDA-LRL-------------------------AFQHDEEVLI----------------- 179
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ ++PS+ ++ SG E K+ PA + ++
Sbjct: 180 EKWLSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEAS 232
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + Q + L A L +G+ RID ++ D G+ ++EVNT PGMT +++ A
Sbjct: 233 Q--EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEVNTSPGMTSHSLVPMAA-- 287
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 288 RQAGMSFSQLVVRILEL 304
>gi|356668617|gb|AET35511.1| D-alanine--D-alanine ligase [uncultured bacterium]
Length = 353
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 125/319 (39%), Gaps = 67/319 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++ DLG+
Sbjct: 97 VFPVLHGLYGEDGTIQGLLELARIPYVGCGVLASAVSMDKLYTKIIVS---DLGIRQAEY 153
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ +E+L +D E K + +KP+ G S G+++
Sbjct: 154 EAVYREEL---SAMDQVAERIEKHFPYPVFIKPSNAGSSRGISK---------------- 194
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
N G+ E +IL+ E V
Sbjct: 195 -----ADNRRELMDGLTEAARHDRKILVEETIVGR------------------------- 224
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EI V G S +V G+IL+ E F ++ E D
Sbjct: 225 -EIECAVFGGGAS------AVEASGVGEILAAAE-FYDFDAKYFNEDSRTVTDPELPDGA 276
Query: 666 KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
QR+ A A+ G +R+D FV D+GEV+ E+NT+PG T + ++ L E
Sbjct: 277 AQRVRRAAMDIFRAVDGYGLARVDFFVK-DDGEVVFNEINTMPGFT--AISMYPMLWEAR 333
Query: 722 PMYPHQFFRKVLDLGSERF 740
+ Q K+L G ER+
Sbjct: 334 GISKDQLVEKLLSHGMERY 352
>gi|162660760|gb|EDQ48523.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 29 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 80
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 531
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 81 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 131
Query: 532 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
AE+ YV A SR PE+L E F+E D
Sbjct: 132 TAEECEQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 159
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
E T V+G H+L V G+ + F T +
Sbjct: 160 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 202
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 203 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMT 256
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GS+IG+T + + ++A ++ D V+ E F+E G E T VL G
Sbjct: 114 MIVKPSREGSTIGLTKVW-TAEECEQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGE 170
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV + + + ++Y+ KY T YH P P IR
Sbjct: 171 GAHALPV--------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIR 215
Query: 160 EGASLLFQRLGLCDFARID 178
F+ LG ++R D
Sbjct: 216 RIVVRAFRTLGCRGWSRAD 234
>gi|222530007|ref|YP_002573889.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor bescii DSM
6725]
gi|254767717|sp|B9MLC6.1|DDL_ANATD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|222456854|gb|ACM61116.1| D-alanine/D-alanine ligase [Caldicellulosiruptor bescii DSM 6725]
Length = 364
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 133/343 (38%), Gaps = 99/343 (28%)
Query: 420 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 472
K+N+AT VF +HG GEDGT+Q LLE G+PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 473 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLV---------------------------------LAIHEAFLYDTK 215
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 636
IL Q+ N EI V+G V V E G+I+ S
Sbjct: 216 ILI-EQAINAR-------------EIECAVLGN--------DEVFVSEPGEIIPSREFYS 253
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ + + P TE + RI I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKI---FECCGMARVDFFVDKDTNKVY 310
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVNT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--SISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
>gi|355679178|ref|ZP_09061230.1| hypothetical protein HMPREF9469_04267 [Clostridium citroniae
WAL-17108]
gi|354812243|gb|EHE96862.1| hypothetical protein HMPREF9469_04267 [Clostridium citroniae
WAL-17108]
Length = 353
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 125/319 (39%), Gaps = 67/319 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++ DLG+
Sbjct: 97 VFPVLHGLYGEDGTIQGLLELARIPYVGCGVLASAVSMDKLYTKIIVS---DLGIRQAEY 153
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ +E+L +D E K + +KP+ G S G+++
Sbjct: 154 EAVYREEL---SAMDQVAERIEKHFPYPVFIKPSNAGSSRGISK---------------- 194
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
N G+ E +IL+ E V
Sbjct: 195 -----ADNRRELMDGLTEAARHDRKILVEETIVGR------------------------- 224
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EI V G S +V G+IL+ E F ++ E D
Sbjct: 225 -EIECAVFGGGAS------AVEASGVGEILAAAE-FYDFDAKYFNEESRTVTDPELPDGA 276
Query: 666 KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
QR+ A A+ G +R+D FV D+GEV+ E+NT+PG T + ++ L E
Sbjct: 277 AQRVRRAAMDIFRAVDGYGLARVDFFVK-DDGEVVFNEINTMPGFT--AISMYPMLWEAR 333
Query: 722 PMYPHQFFRKVLDLGSERF 740
+ Q K+L G ER+
Sbjct: 334 GISKDQLVEKLLSHGMERY 352
>gi|347534595|ref|YP_004841265.1| D-alanine--D-alanine ligase [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504651|gb|AEN99333.1| D-alanine--D-alanine ligase [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 380
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 135/331 (40%), Gaps = 69/331 (20%)
Query: 416 IKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
I L KE VF + HG +GEDGT+Q LL PY G G +AS DK T L+
Sbjct: 87 INLNKEKNIDVFFPIIHGNLGEDGTIQGLLRLLQKPYVGSGSLASGMAYDKDITKKILDV 146
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLC 531
+ VR +L TP D + +++ +L K L +KP+R G S G+ ++
Sbjct: 147 VG----------VRNTNYVLVTPENDHDWNYEKISERLNSKILFIKPSRQGSSIGIHKV- 195
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
N A GM + ++L+ E +E E
Sbjct: 196 --------------------ENQSEYAEGMKDALRYDTKVLV-EEAIEGPE--------- 225
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
E+ + ++G S + ++ V S + + KF + + T
Sbjct: 226 ---------------EVEISILGNENPKGSKVGAIKVPASDAFYTYDNKFVDASKVEFTI 270
Query: 652 PPA--SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P A S ++ E D + + AL+L+G +RID V+ D L E+NT+PG T
Sbjct: 271 PVALPSGVADEITDMAIKAFK----ALELKGMARIDFLVSKDYTPYL-GEINTLPGFT-- 323
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
+ ++ L E + + K+++L E F
Sbjct: 324 NISLYPQLWEASGISYTELIDKLIELAFEEF 354
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 88/219 (40%), Gaps = 46/219 (21%)
Query: 36 NSGKVVVKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 88
NS + +KP+R GSSIG+ A G+ D+L+ D +V+VE +EG
Sbjct: 175 NSKILFIKPSRQGSSIGIHKVENQSEYAEGMKDALR---------YDTKVLVEEAIEGPE 225
Query: 89 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 148
E +L + P ++ G++ V DA + Y K++ +V + P
Sbjct: 226 EVEISILGNEN----------PKGSKV---GAIKVPASDAFYTYDNKFVDASKVEFTIPV 272
Query: 149 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 208
P V + I + A F+ L L ARID FL S + T +
Sbjct: 273 ALPSGVADEITDMAIKAFKALELKGMARID--FLVSKDY---------------TPYLGE 315
Query: 209 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 247
IN + G S Q G S++ ++ +I A F
Sbjct: 316 INTLPGFTNISLYPQLWEASGISYTELIDKLIELAFEEF 354
>gi|403736866|ref|ZP_10949827.1| D-alanine--D-alanine ligase [Austwickia chelonae NBRC 105200]
gi|403192961|dbj|GAB76597.1| D-alanine--D-alanine ligase [Austwickia chelonae NBRC 105200]
Length = 373
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 134/325 (41%), Gaps = 75/325 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLG--VL 481
VF +HG GEDGT+Q +LE + Y G GV+AS MDK +A D+G V+
Sbjct: 109 VVFPLLHGPFGEDGTVQGMLELVDIRYVGSGVLASALMMDKQFMKMAFIEAGLDVGPYVV 168
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLT 537
+K+ RR D + +C+ L VKP R G S GV R+ E+L
Sbjct: 169 ITDKEWRRDPD-------------GALARCEKLAYPLFVKPCRGGSSMGVVRVAGPEELR 215
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
V+ +R H P+++I E +
Sbjct: 216 AAVEV-------------AREHD--------PKVMIEEGILGR----------------- 237
Query: 598 MWKGNSRWVEITVGVI-GKCG--SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
EI GV+ G+ G S + + V+ D+ + K+ + L+ P
Sbjct: 238 ---------EIECGVLEGRAGRPDRASELGEIAVEHGHDLYDFDAKYLHAEDVRLSCP-- 286
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
+ + E D+ + + A EG +R+D F D ++I E+NT+PG T ST +
Sbjct: 287 AELPVEDADRMRAEALIAFAAAGCEGLARVDFFYTSDR-RIVINEINTMPGFT-STSMYP 344
Query: 715 QALSEQPPMYPHQFFRKVLDLGSER 739
Q +E YP + ++++L ER
Sbjct: 345 QVWAETGVSYP-ELISELVELARER 368
Score = 41.6 bits (96), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 34/207 (16%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG--GSEFTAIVLDVGS 99
VKP R GSS+GV G + L+ A + E D +V++E EG G E VL+ +
Sbjct: 194 VKPCRGGSSMGVVRVAGP-EELRAAVEVAREH-DPKVMIE---EGILGREIECGVLEGRA 248
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G L G + V ++++ KYL + V P P+ + +R
Sbjct: 249 GRPDRASEL----------GEIAVEHGHDLYDFDAKYLHAEDVRLSCPAELPVEDADRMR 298
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A + F G AR+D F +S+ + I+ +IN + G TS
Sbjct: 299 AEALIAFAAAGCEGLARVD---------FFYTSDRR--------IVINEINTMPGFTSTS 341
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
Q ++ G S+ ++ ++ A R
Sbjct: 342 MYPQVWAETGVSYPELISELVELARER 368
>gi|398795211|ref|ZP_10555126.1| D-alanine--D-alanine ligase [Pantoea sp. YR343]
gi|398207042|gb|EJM93798.1| D-alanine--D-alanine ligase [Pantoea sp. YR343]
Length = 306
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 131/320 (40%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ A FIA+HG GEDGTLQ++LE +PYTG GVMAS MDK+ + L
Sbjct: 48 LDLKQQGFAKAFIALHGRGGEDGTLQAVLEFLQLPYTGSGVMASAITMDKLRSKLLWQGR 107
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
+ + E L I L L VKP+ +G S G++R+ A+
Sbjct: 108 GLPSGKFVWLTREQHEQGLDADITAAIEALG-----LPLFVKPSCEGSSVGISRVNHADA 162
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L ALEE F D++L + +
Sbjct: 163 LPA---ALEEA------------------------------FRHDDDVLIEAFLSG---- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TVG++G+ ++PS+ +K + + E K+ P S
Sbjct: 186 ----------AEYTVGIVGE-----QILPSIRIKTASEFYDYEAKYISDDTEYFCP---S 227
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + + + AL G+ R+D + G ++EVNT PGMT S L+
Sbjct: 228 GLSAEQEAELQTLVWSAWRALGCSGWGRVDVMAD-GEGNFQLLEVNTSPGMT-SHSLVPM 285
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A + +P Q ++L+L
Sbjct: 286 AAKQAGYSFP-QLVARILEL 304
>gi|303251842|ref|ZP_07338013.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307249143|ref|ZP_07531150.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649272|gb|EFL79457.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854431|gb|EFM86627.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 303
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 130/325 (40%), Gaps = 77/325 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L +
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVD 111
Query: 476 ---ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
AD+ V VRR E + I+ +KL VKP+ +G S GV ++
Sbjct: 112 LPTADMVV------VRRGEAVDSEQII-------AKLGLPVF-VKPSSEGSSVGVTKVKT 157
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
E L + A+EE L F I++ E F+
Sbjct: 158 VEQL---LPAVEEAL------KFDS-------------IVLVEAFL-------------- 181
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
G V + G ++P+V + G+ K+ L P
Sbjct: 182 -------AGKEYSVPVLDG---------QVLPAVQIIPEGEFYDYHAKYISDNTQYLVPA 225
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ E + K E++ G+SRID + NG ++EVNT PGMT ++
Sbjct: 226 LSDDRQAEVAELVKAAYEVVG----CRGWSRIDVMEDA-NGNFNLVEVNTCPGMTSHSIF 280
Query: 713 IHQALSEQPPMYPHQFFRKVLDLGS 737
A + P + +VL+L +
Sbjct: 281 PKSAATVGIPF--EKLVERVLELSA 303
>gi|94268696|ref|ZP_01291259.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
gi|93451501|gb|EAT02328.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
Length = 314
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 130/322 (40%), Gaps = 79/322 (24%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
+D A +LP + I +A F+ +HG +GEDGT+Q L+ G+PY G GV+ S
Sbjct: 44 YDPATDLPRLAADAASIDVA-------FVLLHGTLGEDGTIQGFLDLLGIPYQGSGVLGS 96
Query: 460 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK + L LA L V ++ R D+ + H L + L L VKP
Sbjct: 97 ALAMDK-DLAKELYRLAGLKVPAW--EMARPADIAEP------HRLLA-LLSPPLVVKPV 146
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R G S G++ + E+LT ALE F
Sbjct: 147 RQGSSLGMSIVDAEEELT---PALETA------------------------------FAH 173
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV--KESGDILSL 637
D+++ + E+T GV+G + +P V + E
Sbjct: 174 DDQVMVEQFVAGR--------------EVTGGVLGN--DQLTALPVVEIIPGEQYRFFDY 217
Query: 638 EEKFQGGTGINLTP---PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
+ K+Q G + P PPA + R+ L+L+G+SR D + D
Sbjct: 218 QAKYQPGASREVCPAELPPAVTAQVQEWACRAHRV------LRLKGYSRTDMILAADG-- 269
Query: 695 VLIIEVNTVPGMTPSTVLIHQA 716
+ ++E NT+PGMTP+++ A
Sbjct: 270 LYVLETNTIPGMTPTSLFPQAA 291
>gi|313115115|ref|ZP_07800602.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622555|gb|EFQ06023.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
Length = 363
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 132/315 (41%), Gaps = 59/315 (18%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDGT+Q LLE G+PY G GV+AS CMDK N L + +
Sbjct: 102 VVIPVLHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVA----NALFEANGVPHT 157
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ + +++ + + + KL VKPA G S G++++ ++L KA
Sbjct: 158 RWLAADRWEIESDLEGVCDGVEKKLGWPVF-VKPANAGSSVGISKVSSRDELK---KA-- 211
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
I++ ++FE FV+ E+ + ++ +R
Sbjct: 212 -----------------IDLALENDRKVVFEAFVDGQEVECAVIGSDPAV-------ATR 247
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
EI G + + ++K++ G++ T PA + + LD+
Sbjct: 248 PGEILAG--------------------AEFYTYDDKYK--NGVSQTVIPAHLPEAK-LDE 284
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
K + AL EG +R D FV G VLI E+NT PG T ++ ++ L E +
Sbjct: 285 VKTYAAIAYTALNCEGLARCDFFVEKGTGRVLINEINTFPGFT--SISMYPKLMEHEGLP 342
Query: 725 PHQFFRKVLDLGSER 739
Q +++ L ER
Sbjct: 343 VPQLIDRLIALALER 357
>gi|189485639|ref|YP_001956580.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287598|dbj|BAG14119.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 306
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 127/310 (40%), Gaps = 79/310 (25%)
Query: 406 LPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 465
+ + SI E IK KE +IA+HG +GEDGT+Q +LE G+PYTG G+ AS +DK
Sbjct: 50 IDVNRSIAEEIK--KEKIDVAYIALHGPMGEDGTIQGMLEILGIPYTGSGIFASAASIDK 107
Query: 466 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGC 523
++K + + D+L TP + + + + K + VKP G
Sbjct: 108 ----------------DVSKKIFKYADIL-TPEWKMLKKFGTVPEIKKYPVVVKPVSQGS 150
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
+ GVA + P+ F+ A + E F DE
Sbjct: 151 TIGVA-------------------IVKRPSEFAAA--------------VKEVFKYGDEA 177
Query: 584 LFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
L K E+TVGV+ GK +P V + G + K+Q
Sbjct: 178 LIEQFIEGK--------------EVTVGVLNGKA------LPVVEIVPKGKFYDFKAKYQ 217
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
G ++ P +S EA + + E + + R+D V+ + V + E NT
Sbjct: 218 KGGSQHIIPAG---ISEEAYETVQNYAEKVYEIFKCRAICRVDMIVDRKD-RVWVFENNT 273
Query: 703 VPGMTPSTVL 712
+PGMT ++++
Sbjct: 274 IPGMTETSLV 283
>gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1]
Length = 356
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 118/287 (41%), Gaps = 63/287 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PY G GV+AS MDK A L G+ +
Sbjct: 103 VFPILHGAFGEDGTIQGLLEMAGLPYVGAGVLASAVGMDK---EFAKKLLRAEGLNVADG 159
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V R P DI +L L VKPAR G S GV R+ L + E
Sbjct: 160 IVLR-------PGTDIGFADRDRLGLP-LFVKPARAGSSMGVTRVTDPAGLDAAIAEARE 211
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
++ ++E P E VE + F
Sbjct: 212 HDPKV----------LVESAVPGRE-------VECAVLEFPD------------------ 236
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
GS+ + +P+ ++ +G+ E K+ + + + PA + E D
Sbjct: 237 -----------GSVRASLPA-ELRYNGEFYDFESKYLDVSELEI---PAK-LDDEITDSV 280
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + AL ++G +R+D FV D+G + + EVNT+PG TPS+
Sbjct: 281 RWKAVTAFRALDVQGLARVDFFVT-DDGHITVNEVNTMPGFTPSSAF 326
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 42 VKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP RAGSS+GVT G+ ++ +A+ D +V+VE + G E VL+
Sbjct: 182 VKPARAGSSMGVTRVTDPAGLDAAIAEAR-----EHDPKVLVESAVP-GREVECAVLEFP 235
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G V EL++ G +++ KYL ++ P + + +S+
Sbjct: 236 DG-----SVRASLPAELRYNGE--------FYDFESKYLDVSEL--EIPAKLDDEITDSV 280
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R A F+ L + AR+D +F+ T+ G I ++N + G +
Sbjct: 281 RWKAVTAFRALDVQGLARVD-FFV----------------TDDGHITVNEVNTMPGFTPS 323
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSRFPNL 250
S + + G + +L T++ A +R L
Sbjct: 324 SAFPKMWAVTGLDYGELLTTMVETALARGTGL 355
>gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
gi|229485953|sp|A9BUK8.1|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
Length = 326
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 531
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 112 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 162
Query: 532 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
AE+ YV A SR PE+L E F+E D
Sbjct: 163 TAEECDQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 190
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
E T V+G H+L V G+ + F T +
Sbjct: 191 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 233
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 234 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMT 287
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GS+IG+T + + +A ++ D V+ E F+E G E T VL G
Sbjct: 145 MIVKPSREGSTIGLTKVW-TAEECDQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGE 201
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV + + + ++Y+ KY T YH P P IR
Sbjct: 202 GAHALPV--------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIR 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
F+ LG ++R D S F +IN GM S
Sbjct: 247 RIVVRAFRTLGCRGWSRADIMIRASDRKPF----------------LLEINTSPGMTGHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A +G S+ N+ I+ A
Sbjct: 291 LVPMSARAIGVSYENLCLGILASA 314
>gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 531
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 112 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 162
Query: 532 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
AE+ YV A SR PE+L E F+E D
Sbjct: 163 TAEECEQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 190
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
E T V+G H+L V G+ + F T +
Sbjct: 191 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 233
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 234 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMT 287
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GS+IG+T + + ++A ++ D V+ E F+E G E T VL G
Sbjct: 145 MIVKPSREGSTIGLTKVW-TAEECEQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGE 201
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV + + + ++Y+ KY T YH P P IR
Sbjct: 202 GAHALPV--------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIR 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
F+ LG ++R D S F +IN GM S
Sbjct: 247 RIVVRAFRTLGCRGWSRADIMIRASDRKPF----------------LLEINTSPGMTGHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A +G S+ N+ I+ A
Sbjct: 291 LVPMSARAIGVSYENLCLGILASA 314
>gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
Length = 337
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 127/297 (42%), Gaps = 75/297 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L +E A FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELRREGFARCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMT-------- 111
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 531
K + R E L TP +V E L+ + VKP+R+G + G++++
Sbjct: 112 --------KRIWRAEG-LPTPDWRLVASVEETVEALETLGAPMIVKPSREGSTIGLSKVF 162
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
++ KA E+ SR PE+L E F+E D
Sbjct: 163 SPDEC---AKAYEQA---------SRYD---------PEVLC-EQFIEGD---------- 190
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
E T V+G+ H+L V G+ + F T +
Sbjct: 191 ---------------ETTCPVLGEGAGAHALPVIRIVAPQGNYDYQNKYFTDDTQYHC-- 233
Query: 652 PPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + EA ++ QR+ + A L G++R D + + + ++E+NT PGMT
Sbjct: 234 -PSGL--PEAQEREIQRLVVQAFRTLGCRGWARADIMIRACDRKPFLLEINTSPGMT 287
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 34/222 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GS+IG++ + + K + D V+ E F+E G E T VL G+
Sbjct: 145 MIVKPSREGSTIGLSKVFSPDECAKAYEQA--SRYDPEVLCEQFIE-GDETTCPVLGEGA 201
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV+ + + QG+ ++Y+ KY T YH P P I+
Sbjct: 202 GAHALPVIRI-----VAPQGN---------YDYQNKYF-TDDTQYHCPSGLPEAQEREIQ 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
F+ LG +AR D F +IN GM S
Sbjct: 247 RLVVQAFRTLGCRGWARADIMIRACDRKPF----------------LLEINTSPGMTGHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLP 261
+ A +G S+ ++ ++ A P + + P
Sbjct: 291 LVPMSARALGISYEDLCVGLLATATLDTPPGVTLSPAQGQAP 332
>gi|110640305|ref|YP_668033.1| D-alanine--D-alanine ligase [Escherichia coli 536]
gi|191174586|ref|ZP_03036080.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
gi|300984514|ref|ZP_07177006.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
gi|422376434|ref|ZP_16456685.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
gi|432469423|ref|ZP_19711479.1| D-alanine-D-alanine ligase B [Escherichia coli KTE206]
gi|432711778|ref|ZP_19946832.1| D-alanine-D-alanine ligase B [Escherichia coli KTE8]
gi|433076249|ref|ZP_20262829.1| D-alanine-D-alanine ligase B [Escherichia coli KTE131]
gi|110341897|gb|ABG68134.1| D-alanine-D-alanine ligase B [Escherichia coli 536]
gi|190905133|gb|EDV64778.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
gi|300306683|gb|EFJ61203.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
gi|324012255|gb|EGB81474.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
gi|431001401|gb|ELD16984.1| D-alanine-D-alanine ligase B [Escherichia coli KTE206]
gi|431260322|gb|ELF52420.1| D-alanine-D-alanine ligase B [Escherichia coli KTE8]
gi|431603243|gb|ELI72669.1| D-alanine-D-alanine ligase B [Escherichia coli KTE131]
Length = 306
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P EAL
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPA-----GLEAL 232
Query: 663 DKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
>gi|325283553|ref|YP_004256094.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
gi|324315362|gb|ADY26477.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
Length = 360
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 119/294 (40%), Gaps = 72/294 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN- 484
VF +HG +GEDGT+Q LL G+P+ G GV+ S MDK+ T L G+ +
Sbjct: 104 VFPLLHGPMGEDGTVQGLLTLAGLPFVGSGVLGSSVGMDKIMTKRVLEA---AGIPQVAW 160
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCCAEDLTV 538
++ R E W +Q + L VKPA G S GV+R+ A +L
Sbjct: 161 REASRAE----------WRRDPQGVQSRAAELGFPLFVKPANMGSSVGVSRVTGAGEL-- 208
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+ALE F ++ + + K
Sbjct: 209 -AEALELA------------------------------FGHDRRVIVEAAAGAKPR---- 233
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
E+ VG++G + S P ++ D + K+ GG L P P
Sbjct: 234 --------EVEVGILGNDDPVAS--PVGELRFDTDFYDYDTKYTGGRAEMLIPAPLP--- 280
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
E + + Q + L A AL G SR+D F + GE+L+ E+NT+PG T +++
Sbjct: 281 -EGVSERIQELALRAYQALDCAGLSRVDFFYVEETGELLLNEINTMPGFTTTSM 333
>gi|238021217|ref|ZP_04601643.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
gi|237868197|gb|EEP69203.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
Length = 309
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 121/315 (38%), Gaps = 77/315 (24%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + +L + F +HG GEDGT+Q LEA G+PYTG GV+AS M
Sbjct: 41 DAHPFDPAETNLAELKTQGFQAAFNILHGTYGEDGTVQGALEALGIPYTGCGVLASALGM 100
Query: 464 DKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK L L VL + D E L P L +KPA
Sbjct: 101 DKYRCKLIWQALGLPIPAFAVLHDDSDFTAVEQQLGLP----------------LFIKPA 144
Query: 520 RDGCSTGVARLCCAEDLT-VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
+G S GV ++C A +L +Y + E L HG EIL
Sbjct: 145 AEGSSVGVHKVCQAGELAQIYRQLRRENL-----------HG---------EIL------ 178
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
A++ M G E T GV+ + +PS+ + D E
Sbjct: 179 ---------------AEQFMSGG-----EYTCGVLNQ-----QALPSIRIIPQNDFYDWE 213
Query: 639 EKFQGGTGINLTPPPASIMSTEALDK-CKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
K+Q + L P S + + +Q I R+D F+ G++ I
Sbjct: 214 AKYQRNDTVYLCPSDLSAEDEQLMQSLARQAFAAIGGG---NTCGRVD-FLKDAAGKIYI 269
Query: 698 IEVNTVPGMTPSTVL 712
+EVNT+PGMT +++
Sbjct: 270 LEVNTLPGMTGHSLI 284
>gi|82775499|ref|YP_401846.1| D-alanine--D-alanine ligase [Shigella dysenteriae Sd197]
gi|81239647|gb|ABB60357.1| D-alanine-D-alanine ligase B [Shigella dysenteriae Sd197]
Length = 306
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 140/311 (45%), Gaps = 65/311 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V+
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVVPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ AE+ AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-VAEN------ALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L + +
Sbjct: 166 A-LRL-------------------------AFQHDEEVLIEKWLSGQ------------- 186
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E TV ++G+ ++PS+ ++ SG E K+ PA + +++ +
Sbjct: 187 -EFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ--EAN 236
Query: 666 KQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q M
Sbjct: 237 LQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAGMS 293
Query: 725 PHQFFRKVLDL 735
Q ++L+L
Sbjct: 294 FSQLVVRILEL 304
>gi|333916653|ref|YP_004490385.1| D-alanine--D-alanine ligase [Delftia sp. Cs1-4]
gi|333746853|gb|AEF92030.1| D-alanine--D-alanine ligase [Delftia sp. Cs1-4]
Length = 326
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 531
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 112 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 162
Query: 532 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
AE+ YV A SR PE+L E F+E D
Sbjct: 163 TAEECEQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 190
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
E T V+G H+L V G+ + F T +
Sbjct: 191 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 233
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 234 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRAGDRKPFLLEINTSPGMT 287
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 79/204 (38%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GS+IG+T + + ++A ++ D V+ E F+E G E T VL G
Sbjct: 145 MIVKPSREGSTIGLTKVW-TAEECEQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGE 201
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV + + + ++Y+ KY T YH P P IR
Sbjct: 202 GAHALPV--------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIR 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
F+ LG ++R D F +IN GM S
Sbjct: 247 RIVVRAFRTLGCRGWSRADIMIRAGDRKPF----------------LLEINTSPGMTGHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A +G S+ N+ I+ A
Sbjct: 291 LVPMSARAIGVSYENLCLGILASA 314
>gi|157831486|pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
Phosphoryl Phosphinate
Length = 306
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E KF PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKFLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|441522438|ref|ZP_21004084.1| D-alanine--D-alanine ligase [Gordonia sihwensis NBRC 108236]
gi|441457898|dbj|GAC62045.1| D-alanine--D-alanine ligase [Gordonia sihwensis NBRC 108236]
Length = 357
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 119/296 (40%), Gaps = 69/296 (23%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E+ VF +HG GEDGT+Q +LE +PY G GV+AS CMDK ++A A G+
Sbjct: 89 EDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLASAVCMDK---AMAKEIAARAGI 145
Query: 481 -----LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
+T V +L + T +L VKPA G S GV+R E+
Sbjct: 146 PQCKWITFRDGVDDARQVLA--------DATEQLGLPVF-VKPANMGSSVGVSRADSIEE 196
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L + H + D+++ ++
Sbjct: 197 LDAAIN-----------------HAL-----------------RYDDVVVIEETVTGR-- 220
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+ V V+G SL P +K D E+K+ G + P P
Sbjct: 221 -----------EVEVAVLGNAAPDASL-PG-EIKPGSDFYDYEDKYVTGAAELMIPAP-- 265
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+S EA+ + ++ AL+ G +R+D F D L+ EVNT+PG TP+++
Sbjct: 266 -LSDEAIAQVRELAADAFVALRCAGLARVDFFYEEDGRGWLLNEVNTIPGFTPASM 320
>gi|317493277|ref|ZP_07951699.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918670|gb|EFV40007.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 306
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 133/329 (40%), Gaps = 97/329 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L
Sbjct: 58 VFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKL--------------- 102
Query: 486 DVRRKEDLLKTPIVDIWHE-----LTSKLQCKT------LCVKPARDGCSTGVARLCCAE 534
V + L +P V I LT ++ L VKP+R+G S G++++ A
Sbjct: 103 -VWQASGLPVSPFVAISRAQFDEGLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDA- 160
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+ F A + E F D++L
Sbjct: 161 ------------------SEFDDA--------------LVEAFRHDDDVLV--------- 179
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+W+ E TV +G+ ++PS+ ++ G E K+ P
Sbjct: 180 --------EKWLSGPEYTVAFLGE-----EILPSIRIQAPGVFYDYEAKYLSDKTEYFCP 226
Query: 652 PPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
S + D+ ++ EL A L G+ R+D ++ D GE ++EVNT PGMT
Sbjct: 227 ------SGLSEDRERELAELARKAYKSLDCSGWGRVDVMMDSD-GEFYLLEVNTAPGMTS 279
Query: 709 STVLIHQALSEQPPMYPHQFFRKVLDLGS 737
+++ A Q + Q ++L+L +
Sbjct: 280 HSLVPMAA--RQSGLSFSQLVARILELAN 306
>gi|94263585|ref|ZP_01287395.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
gi|93456005|gb|EAT06156.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
Length = 314
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 130/322 (40%), Gaps = 79/322 (24%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
+D A +LP + I +A F+ +HG +GEDGT+Q L+ G+PY G GV+ S
Sbjct: 44 YDPATDLPRLAADAASIDVA-------FVLLHGTLGEDGTIQGFLDLLGIPYQGSGVLGS 96
Query: 460 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK + L LA L V ++ R D+ + H L + L L VKP
Sbjct: 97 ALAMDK-DLAKELYRLAGLKVPAW--EMARPADIAEP------HRLLA-LLSPPLVVKPV 146
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R G S G++ + E+L ALE F
Sbjct: 147 RQGSSLGMSIVDAEEELA---PALETA------------------------------FAH 173
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV--KESGDILSL 637
D+++ + E+T GV+G + +P V + E
Sbjct: 174 DDQVMVEQFVAGR--------------EVTGGVLGN--DQLTALPVVEIIPGEQYRFFDY 217
Query: 638 EEKFQGGTGINLTP---PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
+ K+Q G + P PPA + C+ AL+L+G+SR D + D
Sbjct: 218 QAKYQPGASREVCPAELPPAVTAQVQEW-ACRAH-----RALRLKGYSRTDMILAADG-- 269
Query: 695 VLIIEVNTVPGMTPSTVLIHQA 716
+ ++E NT+PGMTP+++ A
Sbjct: 270 LYVLETNTIPGMTPTSLFPQAA 291
>gi|26246025|ref|NP_752064.1| D-alanine--D-alanine ligase [Escherichia coli CFT073]
gi|227885003|ref|ZP_04002808.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
gi|300981129|ref|ZP_07175375.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
gi|301048484|ref|ZP_07195509.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
gi|386627603|ref|YP_006147323.1| D-alanine--D-alanine ligase [Escherichia coli str. 'clone D i2']
gi|386632523|ref|YP_006152242.1| D-alanine--D-alanine ligase [Escherichia coli str. 'clone D i14']
gi|386637444|ref|YP_006104242.1| D-alanine--D-alanine ligase [Escherichia coli ABU 83972]
gi|422362519|ref|ZP_16443083.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
gi|432410091|ref|ZP_19652779.1| D-alanine-D-alanine ligase B [Escherichia coli KTE39]
gi|432430250|ref|ZP_19672700.1| D-alanine-D-alanine ligase B [Escherichia coli KTE187]
gi|432434637|ref|ZP_19677048.1| D-alanine-D-alanine ligase B [Escherichia coli KTE188]
gi|432454866|ref|ZP_19697078.1| D-alanine-D-alanine ligase B [Escherichia coli KTE201]
gi|432493916|ref|ZP_19735738.1| D-alanine-D-alanine ligase B [Escherichia coli KTE214]
gi|432510321|ref|ZP_19749181.1| D-alanine-D-alanine ligase B [Escherichia coli KTE220]
gi|432522230|ref|ZP_19759375.1| D-alanine-D-alanine ligase B [Escherichia coli KTE230]
gi|432566961|ref|ZP_19803493.1| D-alanine-D-alanine ligase B [Escherichia coli KTE53]
gi|432591091|ref|ZP_19827424.1| D-alanine-D-alanine ligase B [Escherichia coli KTE60]
gi|432605954|ref|ZP_19842154.1| D-alanine-D-alanine ligase B [Escherichia coli KTE67]
gi|432649458|ref|ZP_19885228.1| D-alanine-D-alanine ligase B [Escherichia coli KTE87]
gi|432781976|ref|ZP_20016163.1| D-alanine-D-alanine ligase B [Escherichia coli KTE63]
gi|432842351|ref|ZP_20075779.1| D-alanine-D-alanine ligase B [Escherichia coli KTE141]
gi|432976793|ref|ZP_20165620.1| D-alanine-D-alanine ligase B [Escherichia coli KTE209]
gi|432993845|ref|ZP_20182466.1| D-alanine-D-alanine ligase B [Escherichia coli KTE218]
gi|432998262|ref|ZP_20186813.1| D-alanine-D-alanine ligase B [Escherichia coli KTE223]
gi|433056414|ref|ZP_20243516.1| D-alanine-D-alanine ligase B [Escherichia coli KTE124]
gi|433085737|ref|ZP_20272149.1| D-alanine-D-alanine ligase B [Escherichia coli KTE137]
gi|433114023|ref|ZP_20299849.1| D-alanine-D-alanine ligase B [Escherichia coli KTE153]
gi|433123687|ref|ZP_20309287.1| D-alanine-D-alanine ligase B [Escherichia coli KTE160]
gi|433137754|ref|ZP_20323050.1| D-alanine-D-alanine ligase B [Escherichia coli KTE167]
gi|433147505|ref|ZP_20332594.1| D-alanine-D-alanine ligase B [Escherichia coli KTE174]
gi|433206259|ref|ZP_20389969.1| D-alanine-D-alanine ligase B [Escherichia coli KTE97]
gi|433211008|ref|ZP_20394633.1| D-alanine-D-alanine ligase B [Escherichia coli KTE99]
gi|29336713|sp|Q8FL63.3|DDLB_ECOL6 RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|26106422|gb|AAN78608.1|AE016755_108 D-alanine--D-alanine ligase B [Escherichia coli CFT073]
gi|227837832|gb|EEJ48298.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
gi|300299670|gb|EFJ56055.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
gi|300409031|gb|EFJ92569.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
gi|307551936|gb|ADN44711.1| D-alanine--D-alanine ligase B [Escherichia coli ABU 83972]
gi|315294713|gb|EFU54056.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
gi|355418502|gb|AER82699.1| D-alanine--D-alanine ligase [Escherichia coli str. 'clone D i2']
gi|355423422|gb|AER87618.1| D-alanine--D-alanine ligase [Escherichia coli str. 'clone D i14']
gi|430939583|gb|ELC59799.1| D-alanine-D-alanine ligase B [Escherichia coli KTE39]
gi|430957556|gb|ELC76208.1| D-alanine-D-alanine ligase B [Escherichia coli KTE187]
gi|430968122|gb|ELC85355.1| D-alanine-D-alanine ligase B [Escherichia coli KTE188]
gi|430986799|gb|ELD03365.1| D-alanine-D-alanine ligase B [Escherichia coli KTE201]
gi|431029690|gb|ELD42721.1| D-alanine-D-alanine ligase B [Escherichia coli KTE214]
gi|431032464|gb|ELD45174.1| D-alanine-D-alanine ligase B [Escherichia coli KTE220]
gi|431055570|gb|ELD65109.1| D-alanine-D-alanine ligase B [Escherichia coli KTE230]
gi|431103540|gb|ELE08183.1| D-alanine-D-alanine ligase B [Escherichia coli KTE53]
gi|431133652|gb|ELE35619.1| D-alanine-D-alanine ligase B [Escherichia coli KTE60]
gi|431142222|gb|ELE43972.1| D-alanine-D-alanine ligase B [Escherichia coli KTE67]
gi|431194744|gb|ELE93959.1| D-alanine-D-alanine ligase B [Escherichia coli KTE87]
gi|431332869|gb|ELG20090.1| D-alanine-D-alanine ligase B [Escherichia coli KTE63]
gi|431398119|gb|ELG81542.1| D-alanine-D-alanine ligase B [Escherichia coli KTE141]
gi|431483751|gb|ELH63440.1| D-alanine-D-alanine ligase B [Escherichia coli KTE209]
gi|431511583|gb|ELH89714.1| D-alanine-D-alanine ligase B [Escherichia coli KTE218]
gi|431516421|gb|ELH94031.1| D-alanine-D-alanine ligase B [Escherichia coli KTE223]
gi|431575710|gb|ELI48441.1| D-alanine-D-alanine ligase B [Escherichia coli KTE124]
gi|431611365|gb|ELI80644.1| D-alanine-D-alanine ligase B [Escherichia coli KTE137]
gi|431637966|gb|ELJ06016.1| D-alanine-D-alanine ligase B [Escherichia coli KTE153]
gi|431651262|gb|ELJ18528.1| D-alanine-D-alanine ligase B [Escherichia coli KTE160]
gi|431666111|gb|ELJ32814.1| D-alanine-D-alanine ligase B [Escherichia coli KTE167]
gi|431680001|gb|ELJ45880.1| D-alanine-D-alanine ligase B [Escherichia coli KTE174]
gi|431734003|gb|ELJ97405.1| D-alanine-D-alanine ligase B [Escherichia coli KTE97]
gi|431736716|gb|ELK00041.1| D-alanine-D-alanine ligase B [Escherichia coli KTE99]
Length = 306
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P EAL
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPA-----GLEAL 232
Query: 663 DKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
>gi|365837152|ref|ZP_09378532.1| D-ala D-ala ligase protein [Hafnia alvei ATCC 51873]
gi|364562730|gb|EHM40564.1| D-ala D-ala ligase protein [Hafnia alvei ATCC 51873]
Length = 310
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 133/329 (40%), Gaps = 97/329 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L
Sbjct: 62 VFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKL--------------- 106
Query: 486 DVRRKEDLLKTPIVDIWHE-----LTSKLQCKT------LCVKPARDGCSTGVARLCCAE 534
V + L +P V I LT ++ L VKP+R+G S G++++ A
Sbjct: 107 -VWQASGLPVSPFVAISRAQFDEGLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDA- 164
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+ F A + E F D++L
Sbjct: 165 ------------------SEFDDA--------------LVEAFRHDDDVLV--------- 183
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+W+ E TV +G+ ++PS+ ++ G E K+ P
Sbjct: 184 --------EKWLSGPEYTVAFLGE-----EILPSIRIQAPGVFYDYEAKYLSDKTEYFCP 230
Query: 652 PPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
S + D+ ++ EL A L G+ R+D ++ D GE ++EVNT PGMT
Sbjct: 231 ------SGLSEDRERELAELARKAYKSLDCSGWGRVDVMMDSD-GEFYLLEVNTAPGMTS 283
Query: 709 STVLIHQALSEQPPMYPHQFFRKVLDLGS 737
+++ A Q + Q ++L+L +
Sbjct: 284 HSLVPMAA--RQSGLSFSQLVARILELAN 310
>gi|170683837|ref|YP_001742214.1| D-alanine--D-alanine ligase [Escherichia coli SMS-3-5]
gi|170521555|gb|ACB19733.1| D-alanine--D-alanine ligase B [Escherichia coli SMS-3-5]
Length = 306
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDQQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P EAL
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPA-----GLEAL 232
Query: 663 DKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
>gi|347727060|gb|AEP19888.1| D-alanine D-alanine ligase [Exiguobacterium sp. 11-28]
Length = 305
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 125/290 (43%), Gaps = 69/290 (23%)
Query: 423 QATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL 481
QA V + A+HG GEDG +QSLLE G+PYTG GV+AS MDK A ++
Sbjct: 52 QADVVVSALHGKYGEDGRVQSLLEMAGLPYTGSGVLASALAMDK----------ARAKII 101
Query: 482 TINKDVRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
+R D+L DI E ++ C VKPA++G S G LT+
Sbjct: 102 FAAAGIRIARDVLIETGDDIDAKIAEWGAEFPC---VVKPAQEGSSNG---------LTI 149
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
A++E +LR G+ + +L+ E ++
Sbjct: 150 ---AMDEAMLR---------QGIDKAFACDTAVLV-EQYI-------------------- 176
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
KG E+TV V+G G+ + +P + + + E K+ G I++ P
Sbjct: 177 -KGR----ELTVPVLGNHGA-ETALPVIEIIPKNEFYDYESKYSEGGSIHVCPAELPDAL 230
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
TE + + AL G+SR D F+ + G I+E NT+PGMTP
Sbjct: 231 TEEVQTAAIKAH---RALGCSGYSRSD-FLVSETGLAYILETNTLPGMTP 276
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 37/201 (18%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVKP + GSS G+T+A +D +GI D V+VE +++ G E T VL
Sbjct: 135 VVKPAQEGSSNGLTIA---MDEAMLRQGIDKAFACDTAVLVEQYIK-GRELTVPVLGNHG 190
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV +++ K+ ++Y KY + + P P + ++
Sbjct: 191 AETALPV--------------IEIIPKNEFYDYESKYSEGGSI-HVCPAELPDALTEEVQ 235
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A + LG ++R D FL S T G + N + GM S
Sbjct: 236 TAAIKAHRALGCSGYSRSD--FLVSET---------------GLAYILETNTLPGMTPLS 278
Query: 220 FLFQQASKVGFSHSNILRTII 240
A VG S+ +L I
Sbjct: 279 LFPDSARAVGISYGELLERFI 299
>gi|422768344|ref|ZP_16822069.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
gi|323935144|gb|EGB31511.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
Length = 306
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAAWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|424510200|ref|ZP_17956505.1| D-alanine--D-alanine ligase B [Escherichia coli TW14313]
gi|390862872|gb|EIP25040.1| D-alanine--D-alanine ligase B [Escherichia coli TW14313]
Length = 306
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 143/316 (45%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL--TI 483
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V+
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVVPWVA 116
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V ++ L + +I S L + VKP+R+G S G++++ AE+ AL
Sbjct: 117 LTRVEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-VAEN------AL 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
++ LR+ F +E+L
Sbjct: 164 QDA-LRL-------------------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PSV ++ SG E K+ PA + +++
Sbjct: 181 KWLSGPEFTVAILGE-----EILPSVRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ 233
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 234 --EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 289 QAGMSFSQLVVRILEL 304
>gi|451979773|ref|ZP_21928183.1| D-alanine-D-alanine ligase [Nitrospina gracilis 3/211]
gi|451762953|emb|CCQ89383.1| D-alanine-D-alanine ligase [Nitrospina gracilis 3/211]
Length = 307
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 124/310 (40%), Gaps = 71/310 (22%)
Query: 403 ADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 462
A E+ + H + W ++ FIA+HG GEDGT+Q LLE +PYTG GV+ S
Sbjct: 41 AVEIDVTHDV--WTQVKDAGIDLAFIALHGTYGEDGTIQGLLEYARIPYTGSGVLGSAVA 98
Query: 463 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
+KV + G+ T V RK P D + + VKP+ G
Sbjct: 99 YNKVTSKEVFMQ---NGIPTAAYQVVRK------PERDAFQRHLD----LPVVVKPSDQG 145
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S GV + AE+ ALE F T+E
Sbjct: 146 SSLGVTIVREAEEFDA---ALELA------------------------------FRYTEE 172
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
++ ++++ + IG G MP V ++ E K+
Sbjct: 173 VVV-----------------EQYIDGKLLAIGMHG--EKPMPIVHIRPKSGFYDYESKYT 213
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
G + P S + E C+Q + AL+ GF R+D ++ D+G ++E+NT
Sbjct: 214 KGKTEYICPAELSGIERET---CQQVAIAVFRALKGRGFPRVDVILD-DDGVPYVLEMNT 269
Query: 703 VPGMTPSTVL 712
+PGMTP+++L
Sbjct: 270 IPGMTPTSLL 279
>gi|395229149|ref|ZP_10407465.1| D-alanine--D-alanine ligase B [Citrobacter sp. A1]
gi|424729248|ref|ZP_18157850.1| d-alanine--d-alanine ligase b [Citrobacter sp. L17]
gi|394717202|gb|EJF22900.1| D-alanine--D-alanine ligase B [Citrobacter sp. A1]
gi|422895972|gb|EKU35758.1| d-alanine--d-alanine ligase b [Citrobacter sp. L17]
Length = 306
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 133/315 (42%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L +
Sbjct: 58 VFIALHGRGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAG----LPVAP 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + + D E +K+ L VKP+R+G S G+++ +
Sbjct: 114 WVALTRSEFEKGLSD---EAVTKISALGLPLIVKPSREGSSVGMSK-------------V 157
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
EE N+ A + F +E+L
Sbjct: 158 EE------ENALQGALAL--------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 181 KWLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---AGLEAE 232
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ ++ + AL +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEARLQELVLKAWTALGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
+ Q ++L+L
Sbjct: 290 AGLSFSQLVVRILEL 304
>gi|425298264|ref|ZP_18688322.1| D-alanine--D-alanine ligase 1 [Escherichia coli 07798]
gi|408222011|gb|EKI45918.1| D-alanine--D-alanine ligase 1 [Escherichia coli 07798]
Length = 281
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 33 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 91
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 92 LTRAE---FEKGLNDQQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 140
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 141 A-LRL-------------------------AFQHDEEVLI-----------------EKW 157
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P EAL
Sbjct: 158 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPA-----GLEAL 207
Query: 663 DKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 208 QEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 264
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 265 AGMSFSQLVVRILEL 279
>gi|392982141|ref|YP_006480728.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa DK2]
gi|419756702|ref|ZP_14283047.1| D-alanine--D-alanine ligase A [Pseudomonas aeruginosa PADK2_CF510]
gi|384396457|gb|EIE42875.1| D-alanine--D-alanine ligase A [Pseudomonas aeruginosa PADK2_CF510]
gi|392317646|gb|AFM63026.1| D-alanine--D-alanine ligase A [Pseudomonas aeruginosa DK2]
Length = 346
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 109/438 (24%), Positives = 165/438 (37%), Gaps = 138/438 (31%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG + ER VS+ SG V L++ + ++D +SG
Sbjct: 7 KVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVL-------AVDTASG----------- 48
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
L+ +LA+ ++ + PD + ++ + L G
Sbjct: 49 ----------LLGAEEERRLLASKVKEVPPDSDSLA------IIRSGKQSLLSAGELAGV 92
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ F+A+HGG GEDGTLQ+LL+A G YTG G +AS
Sbjct: 93 DV-----------------------FFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASA 129
Query: 461 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK VA L L GV T + L P + E + L VKP
Sbjct: 130 MAMDKDVAKRLFLAA----GVETAS--------WLMAPASE---EAVREQLGFPLVVKPN 174
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G + G S H E+ +P +E
Sbjct: 175 SQGSTVG----------------------------LSIVHSQAEL----------QPAIE 196
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLE 638
+ D +M + E+TVGV+ +P + G ++ E
Sbjct: 197 L---------AGRYGDEVMLERFVAGREVTVGVLDD-----QALPVGEILLGGQEVFDYE 242
Query: 639 EKFQGGTGINLTP---PPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGE 694
K+Q G + P PP A+ QR+ L + AL+L G+SRID F + G
Sbjct: 243 HKYQAGAVREVFPADLPP-------AIAAVAQRLALKVHRALKLSGYSRID-FRLDEQGR 294
Query: 695 VLIIEVNTVPGMTPSTVL 712
+ +EVNT+PGMT +++L
Sbjct: 295 LWCLEVNTLPGMTATSLL 312
>gi|398798937|ref|ZP_10558233.1| D-alanine--D-alanine ligase [Pantoea sp. GM01]
gi|398099535|gb|EJL89792.1| D-alanine--D-alanine ligase [Pantoea sp. GM01]
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 132/320 (41%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ A FIA+HG GEDGTLQ++LE +PYTG GVMAS MDK+ + L
Sbjct: 48 LDLKQQGFAKAFIALHGRGGEDGTLQAVLEFLQLPYTGSGVMASAITMDKLRSKLLWQGR 107
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
+ ++ + L V L L VKP+ +G S G++R+ A+
Sbjct: 108 GLPSGKFVWLTRQQHQQGLDADTVAAIQALG-----LPLFVKPSCEGSSVGISRVNHADA 162
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L ALEE F D++L + +
Sbjct: 163 LPA---ALEEA------------------------------FRHDDDVLIEAFLSG---- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TVG++G+ ++PS+ +K + + E K+ P S
Sbjct: 186 ----------AEYTVGIVGE-----QILPSIRIKTASEFYDYEAKYISDDTEYFCP---S 227
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + ++ + AL G+ R+D + G ++EVNT PGMT S L+
Sbjct: 228 GLSAEREAELQKLVWAAWRALGCSGWGRVDVMAD-GEGNFQLLEVNTSPGMT-SHSLVPM 285
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
+ +P Q ++L+L
Sbjct: 286 GAKQAGYSFP-QLVARILEL 304
>gi|218552675|ref|YP_002385588.1| D-alanine--D-alanine ligase [Escherichia coli IAI1]
gi|218693561|ref|YP_002401228.1| D-alanine--D-alanine ligase [Escherichia coli 55989]
gi|332281220|ref|ZP_08393633.1| D-alanine:D-alanine ligase [Shigella sp. D9]
gi|407467550|ref|YP_006786008.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483734|ref|YP_006780883.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484274|ref|YP_006771820.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|417160154|ref|ZP_11997073.1| D-alanine--D-alanine ligase [Escherichia coli 99.0741]
gi|417831195|ref|ZP_12477723.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
01-09591]
gi|417864386|ref|ZP_12509432.1| ddlB [Escherichia coli O104:H4 str. C227-11]
gi|422761770|ref|ZP_16815528.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
gi|422990798|ref|ZP_16981569.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
C227-11]
gi|422992738|ref|ZP_16983502.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
C236-11]
gi|422997947|ref|ZP_16988703.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
09-7901]
gi|423006431|ref|ZP_16997175.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
04-8351]
gi|423008053|ref|ZP_16998791.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-3677]
gi|423022239|ref|ZP_17012942.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-4404]
gi|423027394|ref|ZP_17018087.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-4522]
gi|423033231|ref|ZP_17023915.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-4623]
gi|423036097|ref|ZP_17026771.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C1]
gi|423041217|ref|ZP_17031884.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C2]
gi|423047903|ref|ZP_17038560.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C3]
gi|423056441|ref|ZP_17045246.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C4]
gi|423058452|ref|ZP_17047248.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C5]
gi|429722296|ref|ZP_19257195.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429774374|ref|ZP_19306378.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02030]
gi|429779634|ref|ZP_19311590.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02033-1]
gi|429783689|ref|ZP_19315603.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02092]
gi|429789027|ref|ZP_19320903.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02093]
gi|429795257|ref|ZP_19327084.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02281]
gi|429801183|ref|ZP_19332962.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02318]
gi|429804815|ref|ZP_19336563.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02913]
gi|429809626|ref|ZP_19341329.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-03439]
gi|429815386|ref|ZP_19347046.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-04080]
gi|429820597|ref|ZP_19352212.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-03943]
gi|429906648|ref|ZP_19372618.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910843|ref|ZP_19376800.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916683|ref|ZP_19382624.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921721|ref|ZP_19387643.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927538|ref|ZP_19393445.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429931471|ref|ZP_19397367.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429938014|ref|ZP_19403895.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429938729|ref|ZP_19404603.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946370|ref|ZP_19412226.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949018|ref|ZP_19414866.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957285|ref|ZP_19423114.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432763377|ref|ZP_19997834.1| D-alanine-D-alanine ligase B [Escherichia coli KTE48]
gi|218350293|emb|CAU95976.1| D-alanine:D-alanine ligase [Escherichia coli 55989]
gi|218359443|emb|CAQ96981.1| D-alanine:D-alanine ligase [Escherichia coli IAI1]
gi|324118442|gb|EGC12336.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
gi|332103572|gb|EGJ06918.1| D-alanine:D-alanine ligase [Shigella sp. D9]
gi|340736064|gb|EGR65114.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
01-09591]
gi|341917675|gb|EGT67290.1| ddlB [Escherichia coli O104:H4 str. C227-11]
gi|354859297|gb|EHF19745.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
04-8351]
gi|354859784|gb|EHF20231.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
C227-11]
gi|354866481|gb|EHF26904.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
C236-11]
gi|354876815|gb|EHF37175.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
09-7901]
gi|354881824|gb|EHF42152.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-4404]
gi|354884922|gb|EHF45233.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-3677]
gi|354886369|gb|EHF46656.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-4522]
gi|354889885|gb|EHF50132.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-4623]
gi|354902085|gb|EHF62207.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C1]
gi|354905411|gb|EHF65494.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C2]
gi|354907918|gb|EHF67974.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C3]
gi|354910189|gb|EHF70217.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C4]
gi|354918390|gb|EHF78346.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str. 11-4632
C5]
gi|386174645|gb|EIH46638.1| D-alanine--D-alanine ligase [Escherichia coli 99.0741]
gi|406779436|gb|AFS58860.1| D-alanyl-alanine synthetase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056031|gb|AFS76082.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063585|gb|AFS84632.1| D-alanine--D-alanine ligase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|429352424|gb|EKY89139.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02030]
gi|429353480|gb|EKY90188.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02033-1]
gi|429353978|gb|EKY90683.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02092]
gi|429367468|gb|EKZ04062.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02093]
gi|429368620|gb|EKZ05206.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02281]
gi|429370846|gb|EKZ07409.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02318]
gi|429383220|gb|EKZ19681.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-02913]
gi|429386069|gb|EKZ22519.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-03439]
gi|429386982|gb|EKZ23427.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-03943]
gi|429398242|gb|EKZ34585.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
11-04080]
gi|429399958|gb|EKZ36276.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429400292|gb|EKZ36609.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429411383|gb|EKZ47593.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429412955|gb|EKZ49145.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429420007|gb|EKZ56141.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429423869|gb|EKZ59976.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429430026|gb|EKZ66093.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429435968|gb|EKZ71985.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429443152|gb|EKZ79105.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429445574|gb|EKZ81515.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429452043|gb|EKZ87930.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456894|gb|EKZ92737.1| D-alanine-D-alanine ligase B [Escherichia coli O104:H4 str.
Ec11-9941]
gi|431314452|gb|ELG02404.1| D-alanine-D-alanine ligase B [Escherichia coli KTE48]
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 136/316 (43%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ P EA
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPA-----GLEAS 232
Query: 663 DKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+ + EL+ A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 233 QEANLQ-ELVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 289 QAGMSFSQLVVRILEL 304
>gi|385785808|ref|YP_005816917.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617]
gi|310765080|gb|ADP10030.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617]
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 136/333 (40%), Gaps = 91/333 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK----------- 465
+L +E FIA+HG GEDGTLQ +LE +PYTG GVMAS MDK
Sbjct: 49 RLNEEGFDKAFIALHGRGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCG 108
Query: 466 --VATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
V+ +ALN + D G ++ + + L P L VKP+R+G
Sbjct: 109 LPVSPFVALNRVQMDAG---LDAQLMTSINALGLP----------------LFVKPSREG 149
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G++R+ A +L ALEE F +E
Sbjct: 150 SSVGISRVNQASELQA---ALEEA------------------------------FRFDNE 176
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
+L + + E TVGV+G ++PS+ ++ + + + K+
Sbjct: 177 VLVEAFLSGP--------------EYTVGVLGS-----DILPSIRIQTTSEFYDYDAKYI 217
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
P S +S + + ++ AL G+ R+D + D G ++EVNT
Sbjct: 218 SDETQYFCP---SGLSADQETELRELTIAAWRALGCSGWGRVDVMMGAD-GHFYLLEVNT 273
Query: 703 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
PGMT +++ A +Q M Q ++L+L
Sbjct: 274 SPGMTSHSLVPMAA--KQAGMTFSQLVVRILEL 304
>gi|374313903|ref|YP_005060332.1| D-alanine--D-alanine ligase [Serratia symbiotica str. 'Cinara
cedri']
gi|363988129|gb|AEW44320.1| D-alanine--D-alanine ligase B [Serratia symbiotica str. 'Cinara
cedri']
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 129/312 (41%), Gaps = 75/312 (24%)
Query: 410 HSINEW----IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 465
H IN W IKL + + VFI++HG GEDGT+Q LLE +PYTG GVMAS MDK
Sbjct: 38 HGINPWEFPVIKLKAQGFSKVFISLHGRGGEDGTIQGLLEFLELPYTGSGVMASALSMDK 97
Query: 466 VATSLALNH--LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 523
+ + L + +TIN K+ IV + E ++L L VKP R+G
Sbjct: 98 WRSKMLWQSMGLPVVPYVTIN----YKQYACAEKIVLL--ERLARLGF-PLMVKPNREGS 150
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S G++++ +L E+ + + F +E+
Sbjct: 151 SIGISKVNINNEL---------------------------------EVALQKAFRYDNEV 177
Query: 584 LFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
+ RW+ E TV ++G ++PS+ + + E K
Sbjct: 178 IL-----------------ERWLSGPEYTVSILG-----DQVLPSIRIYPTRMFYDYEAK 215
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ P S +S E D+ AL G+ R+D + N ++EV
Sbjct: 216 YGTDNTKYYCP---SGLSKEKEDEITSLALYAYRALDCRGWGRVD-IIQDSNSCFYLLEV 271
Query: 701 NTVPGMTPSTVL 712
NT PGMT ++++
Sbjct: 272 NTSPGMTNNSLV 283
>gi|365142656|ref|ZP_09347772.1| D-alanine-D-alanine ligase B [Klebsiella sp. 4_1_44FAA]
gi|363651438|gb|EHL90506.1| D-alanine-D-alanine ligase B [Klebsiella sp. 4_1_44FAA]
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 138/335 (41%), Gaps = 95/335 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K+ FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L A
Sbjct: 49 QLKKQGFKKAFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKW-LWQGA 107
Query: 477 DLGV-----LT-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
L V LT ++ DV ++ L P++ +KP+R+G S
Sbjct: 108 GLPVAPWVALTRAQFAAGLSTDVEQQIAALGLPVI----------------IKPSREGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
++++ + DL ++ + A F DE+L
Sbjct: 152 VEMSKVSESCDLA---------------SALALA------------------FQHDDEVL 178
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E TV ++G+ ++PS+ ++ +G E K+
Sbjct: 179 V-----------------EKWLSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
P A + Q + L A N L +G+ RID ++ D G+ ++E
Sbjct: 217 LSDETQYFCPG----FEDPARESAIQNLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEA 271
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
NT PGMT +++ A Q M Q ++LDL
Sbjct: 272 NTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|227327089|ref|ZP_03831113.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 126/302 (41%), Gaps = 75/302 (24%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E +FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 50 LKEEGFTKIFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGL 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
+ D R+ + ++ + L L VKP+R+G S G++++ +L
Sbjct: 110 PVSPYVALDRRQYSETAANALLAKFTHL-----GLPLIVKPSREGSSVGMSKVNTLSELP 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
ALEE F D+IL
Sbjct: 165 A---ALEEA------------------------------FRHDDDILV------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G ++PS+ ++ +G E K+ L+
Sbjct: 180 -----EKWLSGPEYTVAILGD-----EVLPSIRIQPAGTFYDYEAKY-------LSDDTQ 222
Query: 655 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
+ D+ +Q + +A A+ G+ R+D ++ D G ++EVNT PGMT +
Sbjct: 223 YFCPSGLPDEQEQALAGLAMAAYRAVGCSGWGRVDFMLDSD-GAFYLLEVNTSPGMTSHS 281
Query: 711 VL 712
++
Sbjct: 282 LV 283
>gi|296132694|ref|YP_003639941.1| D-alanine--D-alanine ligase [Thermincola potens JR]
gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR]
Length = 365
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 122/295 (41%), Gaps = 63/295 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK--VATSLALN 473
I +E+ V +HG GEDGTLQ LLE +PY G GV AS MDK + A +
Sbjct: 88 IFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVGCGVAASSVGMDKAMMKAMFAQH 147
Query: 474 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
+L LT +R++ + + PI D E+ + L VKPA G S G+++
Sbjct: 148 NLPQGKYLTF---LRKEWEKDQDPICD---EIETALGYPVF-VKPANLGSSVGISKAANR 200
Query: 534 EDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
++L VKA+ CL + R
Sbjct: 201 DEL---VKAMHLACL-------YDR----------------------------------- 215
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
+++ + N EI V V+G S+ + D E K+ GT P
Sbjct: 216 ---KVVVEENINGREIEVAVLGNDEPEASIAGEIV--PCNDFYDYEAKYISGTSELKIPA 270
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P + + +++ ++ A+ G SR+D F+ D GE+LI E+NT+PG T
Sbjct: 271 P---LDDKTMNEVRKLAVKAFKAIDGAGLSRVDFFIKKDTGEILINEINTLPGFT 322
>gi|261343730|ref|ZP_05971375.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
gi|282568113|gb|EFB73648.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
Length = 367
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 109/460 (23%), Positives = 181/460 (39%), Gaps = 112/460 (24%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG ++E +VSL S N+ +N N +V CL+ + +
Sbjct: 6 VGVIFGGKSTEHEVSLQSAKNI-INGLDRNKFDV--CLIGINKEGQ-------------- 48
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
W H +E + +P A + R+ + V G K+ F +
Sbjct: 49 ---W---------HEYDEA-NFLVHGDDPAHIALNTPKRSIAI---VPG-KQKEQFISLE 91
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
A LP +F VHG +GEDG+LQ LL +P+ GPGV+ S
Sbjct: 92 DAKPLPQID--------------VIFPIVHGNLGEDGSLQGLLRMANLPFVGPGVLGSSA 137
Query: 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 521
CMDK T L D G+ ++ +LK+ I + T + L +KPA
Sbjct: 138 CMDKDVTKRLLR---DAGL-----NIAPFITILKSGREQISYAATVEKLGLPLFIKPANQ 189
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S G++++ N+ S + ++ F+
Sbjct: 190 GSSVGISKV----------------------NNESEFYAALDF-----------AFLFDV 216
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
++L S + EI V+G + S + + +S + K+
Sbjct: 217 KVLIESAVKGR--------------EIECAVLGNEQPLASPCGEIVLHDS--FYAYHTKY 260
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEV 700
G ++ P EA+ + ++I L A AL G SR+D F+ D +V+I E+
Sbjct: 261 IDENGASVVAPAD---LDEAVSEKIRQIALEAYQALNCSGMSRVDVFL-TDTNDVVINEI 316
Query: 701 NTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
NT+PG T + ++ L +Q M + ++++LG E+F
Sbjct: 317 NTLPGFT--NISMYPKLWQQGGMTYQELISRLIELGMEKF 354
>gi|424074854|ref|ZP_17812246.1| D-alanine--D-alanine ligase B [Escherichia coli FDA505]
gi|424125545|ref|ZP_17858787.1| D-alanine--D-alanine ligase B [Escherichia coli PA9]
gi|424138165|ref|ZP_17870507.1| D-alanine--D-alanine ligase B [Escherichia coli PA14]
gi|424566645|ref|ZP_18007611.1| D-alanine--D-alanine ligase B [Escherichia coli EC4448]
gi|425147830|ref|ZP_18547767.1| D-alanine--D-alanine ligase B [Escherichia coli 88.0221]
gi|429023807|ref|ZP_19090258.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0427]
gi|390654463|gb|EIN32509.1| D-alanine--D-alanine ligase B [Escherichia coli FDA505]
gi|390693757|gb|EIN68374.1| D-alanine--D-alanine ligase B [Escherichia coli PA9]
gi|390715117|gb|EIN87984.1| D-alanine--D-alanine ligase B [Escherichia coli PA14]
gi|390917654|gb|EIP76071.1| D-alanine--D-alanine ligase B [Escherichia coli EC4448]
gi|408614201|gb|EKK87484.1| D-alanine--D-alanine ligase B [Escherichia coli 88.0221]
gi|427293351|gb|EKW56605.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0427]
Length = 298
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +
Sbjct: 50 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 108
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + V ++ L + +I S L + VKP+R+G S G++++ V A
Sbjct: 109 LTR-VEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-------VAENA 154
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L++ LR+ F +E+L
Sbjct: 155 LQDA-LRL-------------------------AFQHDEEVLI----------------- 171
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ ++PSV ++ SG E K+ PA + ++
Sbjct: 172 EKWLSGPEFTVAILGE-----EILPSVRIQPSGTFYDYEAKYLSDETQYFC--PAGLEAS 224
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 225 Q--EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA-- 279
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 280 RQAGMSFSQLVVRILEL 296
>gi|312792764|ref|YP_004025687.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344997044|ref|YP_004799387.1| D-alanine--D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
gi|312179904|gb|ADQ40074.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kristjanssonii
177R1B]
gi|343965263|gb|AEM74410.1| D-alanine--D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
Length = 364
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 134/343 (39%), Gaps = 99/343 (28%)
Query: 420 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 472
K+N+AT VF +HG GEDGT+Q LLE +PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 473 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLV---------------------------------LAIHEAFLYDTK 215
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 636
IL Q+ N EI V+G V V E G+I+ S
Sbjct: 216 ILI-EQAINAR-------------EIECAVLGN--------DEVFVSEPGEIIPSREFYS 253
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ + + P + + E +++ K I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDNSSELIIP---ARLPKEVVEEIKDLAARIYKIFECCGMARVDFFVDKDTNKVY 310
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVNT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--SISMYPKLMEFSSIPYSQLIDKLISLAIEK 351
>gi|260842328|ref|YP_003220106.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
gi|257757475|dbj|BAI28972.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
Length = 306
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV V+G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAVLGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|423350042|ref|ZP_17327697.1| D-alanine-D-alanine ligase [Scardovia wiggsiae F0424]
gi|393702534|gb|EJD64740.1| D-alanine-D-alanine ligase [Scardovia wiggsiae F0424]
Length = 429
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 48/289 (16%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LL GVP+ G GV+AS CMDK T + L I
Sbjct: 147 AVFPVLHGTYGEDGTVQGLLSMMGVPFVGCGVLASAACMDKHYTKVILEQAGIPVAPGIT 206
Query: 485 KDVRRKE--DLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
D R + + D+ ++ L VKP+R G S GV ++ +D +
Sbjct: 207 LDTRSYDAGSRFEQNGFDLLMQVEEAGLEYPLFVKPSRSGSSFGVTKIDYDDDSQARTRK 266
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG- 601
L E + +++ + L+ +G
Sbjct: 267 LVEAVY---------------------------------------EASQHDWRVLVEQGM 287
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTV---KESGDILSLEEKFQGGTGINLTPPPASIMS 658
++R +E V + + + P V E + K+ ++ P + +
Sbjct: 288 DAREIECAVFSPRRGQAPQTAFPGEIVLDKPEEDTFYDFDSKYMDAQASHVEIP--AHLP 345
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ LDK +Q A+ EG SR+D FV D G V++ E+NT+PG T
Sbjct: 346 QDILDKVRQVAAKAFTAVDGEGLSRVDTFVTPD-GTVMVNEINTLPGFT 393
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 33/213 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRVVVELFLEGGSEFTAI 93
+ VKP+R+GSS GVT DS + + ++ E + D RV+VE ++ E
Sbjct: 238 LFVKPSRSGSSFGVTKIDYDDDSQARTRKLV-EAVYEASQHDWRVLVEQGMDA-REIECA 295
Query: 94 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
V G P P E+ L D E+D +++ KY+ Q P P
Sbjct: 296 VFSPRRG--QAPQTAFPGEIVL------DKPEEDTFYDFDSKYMDAQASHVEIPAHLPQD 347
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 213
+++ +R+ A+ F + +R+D + P GT++ +IN +
Sbjct: 348 ILDKVRQVAAKAFTAVDGEGLSRVDTFVTPD-----------------GTVMVNEINTLP 390
Query: 214 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
G S + G S ++ ++I R
Sbjct: 391 GFTSISMYAKAWEATGISSRELIGSLIEGVLQR 423
>gi|380302800|ref|ZP_09852493.1| D-alanine--D-alanine ligase [Brachybacterium squillarum M-6-3]
Length = 376
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 113/287 (39%), Gaps = 69/287 (24%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL---ADLGVLTINKD 486
+HG GEDGT+Q LE VPY G GV+AS C DK AT AL G++ +
Sbjct: 117 LHGPYGEDGTVQGQLELLDVPYVGSGVLASALCQDKAATKRALEAACLSTAAGIVVHEDE 176
Query: 487 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R + + D+ W VKPAR G S GV+++ +L
Sbjct: 177 WARDAEAIAARAGDLRLPWF------------VKPARAGSSLGVSKVSDPAELD------ 218
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
H M P++LI + V
Sbjct: 219 ---------------HAMKTAFAEDPKVLIEQGVV------------------------G 239
Query: 604 RWVEITV--GVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
R VE V G++G G + V V + D E K+ G + + P A + E
Sbjct: 240 REVECGVLAGLVG-AGPRTTEPGEVIVGDDLDFYDYESKYFGKGTVTVEVPAA--LPEEQ 296
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
++ AL LEG SR+D +V D GEV++ EVNT+PG TP
Sbjct: 297 RAAVREVAARAFTALDLEGLSRVDTYVTAD-GEVIVNEVNTMPGFTP 342
>gi|94501894|ref|ZP_01308404.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
gi|94425947|gb|EAT10945.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
Length = 301
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 122/303 (40%), Gaps = 82/303 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+LA++ FIA+HG GEDGT+Q LLE G+PYTG GV AS CMDK + L L+
Sbjct: 51 QLAEQKVDRAFIALHGVGGEDGTIQGLLEFYGIPYTGSGVKASAICMDKWRSKLIWQGLS 110
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLC 531
L TP + L+ + L VKP+ +G S G++++
Sbjct: 111 -----------------LPTPKFTLVESLSDLKEFANQVGYPLMVKPSLEGSSIGISKVA 153
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
L ++ +L E FVE
Sbjct: 154 SEAQLE---------------------RAFVDAKQTGSSVLA-EQFVEG----------- 180
Query: 592 KNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
+E TVG++ GK +P++ +K + D K+ +
Sbjct: 181 --------------LEFTVGILDGKA------LPAIQLKAANDFYDYNAKYLQNDTQYIV 220
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P + +E + C Q + L A +L G+ R+D + G+ +IEVNT+PGMT
Sbjct: 221 PCG---LESEK-EACLQSLALQAYQSLDCHGWGRVDVMQDA-KGDFWLIEVNTIPGMTDH 275
Query: 710 TVL 712
+++
Sbjct: 276 SLV 278
>gi|261338914|ref|ZP_05966772.1| hypothetical protein ENTCAN_05112 [Enterobacter cancerogenus ATCC
35316]
gi|288318739|gb|EFC57677.1| D-alanine--D-alanine ligase B [Enterobacter cancerogenus ATCC
35316]
Length = 306
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 132/314 (42%), Gaps = 73/314 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LL+ G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARDGCSTGVARLCCAEDLTVYVKAL 543
RR+ ++ + + ++ L VKP+R+G S G++++ A DL
Sbjct: 117 LTRREYEM------GLNDSVNGRIAALGLPVIVKPSREGSSVGMSKVDKAGDL------- 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
P + + A F +E+L
Sbjct: 164 --------PAALALA------------------FQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ +G E K+ P S + +
Sbjct: 181 KWLSGPEYTVAMLGE-----EILPSIRIQPAGVFYDYEAKYLSDETQYFCP---SGLEDQ 232
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ + L G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 READLRALVLKAWTVLGCRGWGRIDVMLDGD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLD 734
M Q ++LD
Sbjct: 290 AGMSFSQLVVRILD 303
>gi|15799776|ref|NP_285788.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EDL933]
gi|15829350|ref|NP_308123.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. Sakai]
gi|168751398|ref|ZP_02776420.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4113]
gi|168755700|ref|ZP_02780707.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4401]
gi|168764029|ref|ZP_02789036.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4501]
gi|168771316|ref|ZP_02796323.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4486]
gi|168776936|ref|ZP_02801943.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4196]
gi|168781977|ref|ZP_02806984.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4076]
gi|168789619|ref|ZP_02814626.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
gi|168801519|ref|ZP_02826526.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
gi|195939308|ref|ZP_03084690.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4024]
gi|208806008|ref|ZP_03248345.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4206]
gi|208813450|ref|ZP_03254779.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4045]
gi|208821506|ref|ZP_03261826.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4042]
gi|209399854|ref|YP_002268700.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4115]
gi|217325585|ref|ZP_03441669.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
TW14588]
gi|254791229|ref|YP_003076066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
gi|261226849|ref|ZP_05941130.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK2000]
gi|261255253|ref|ZP_05947786.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK966]
gi|387880653|ref|YP_006310955.1| D-alanine--D-alanine ligase [Escherichia coli Xuzhou21]
gi|416309275|ref|ZP_11655728.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044]
gi|416319029|ref|ZP_11661581.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC1212]
gi|416325916|ref|ZP_11666240.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125]
gi|416773307|ref|ZP_11873585.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101]
gi|416784978|ref|ZP_11878454.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89]
gi|416795750|ref|ZP_11883292.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687]
gi|416828264|ref|ZP_11897863.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61]
gi|419048294|ref|ZP_13595219.1| D-alanine--D-alanine ligase [Escherichia coli DEC3A]
gi|419054375|ref|ZP_13601238.1| D-alanine--D-alanine ligase [Escherichia coli DEC3B]
gi|419054739|ref|ZP_13601600.1| D-alanine--D-alanine ligase [Escherichia coli DEC3C]
gi|419060296|ref|ZP_13607084.1| D-alanine--D-alanine ligase [Escherichia coli DEC3D]
gi|419066127|ref|ZP_13612818.1| D-alanine--D-alanine ligase [Escherichia coli DEC3E]
gi|419073121|ref|ZP_13618697.1| D-alanine--D-alanine ligase [Escherichia coli DEC3F]
gi|419083847|ref|ZP_13629284.1| D-alanine--D-alanine ligase [Escherichia coli DEC4A]
gi|419089856|ref|ZP_13635200.1| D-alanine--D-alanine ligase [Escherichia coli DEC4B]
gi|419095747|ref|ZP_13641016.1| D-alanine--D-alanine ligase [Escherichia coli DEC4C]
gi|419101520|ref|ZP_13646701.1| D-alanine--D-alanine ligase [Escherichia coli DEC4D]
gi|419107136|ref|ZP_13652249.1| D-alanine--D-alanine ligase [Escherichia coli DEC4E]
gi|419112579|ref|ZP_13657624.1| D-alanine--D-alanine ligase [Escherichia coli DEC4F]
gi|420267200|ref|ZP_14769611.1| D-alanine--D-alanine ligase B [Escherichia coli PA22]
gi|420273063|ref|ZP_14775398.1| D-alanine--D-alanine ligase B [Escherichia coli PA40]
gi|420283582|ref|ZP_14785807.1| D-alanine--D-alanine ligase B [Escherichia coli TW06591]
gi|420284232|ref|ZP_14786452.1| D-alanine--D-alanine ligase B [Escherichia coli TW10246]
gi|420290113|ref|ZP_14792282.1| D-alanine--D-alanine ligase B [Escherichia coli TW11039]
gi|420295834|ref|ZP_14797932.1| D-alanine--D-alanine ligase B [Escherichia coli TW09109]
gi|420301717|ref|ZP_14803752.1| D-alanine--D-alanine ligase B [Escherichia coli TW10119]
gi|420307319|ref|ZP_14809295.1| D-alanine--D-alanine ligase B [Escherichia coli EC1738]
gi|420312803|ref|ZP_14814718.1| D-alanine--D-alanine ligase B [Escherichia coli EC1734]
gi|421810237|ref|ZP_16246057.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0416]
gi|421816309|ref|ZP_16251882.1| D-alanine--D-alanine ligase B [Escherichia coli 10.0821]
gi|421821703|ref|ZP_16257148.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK920]
gi|421828454|ref|ZP_16263786.1| D-alanine--D-alanine ligase B [Escherichia coli PA7]
gi|423652455|ref|ZP_17627859.1| D-alanine--D-alanine ligase B [Escherichia coli PA31]
gi|424081102|ref|ZP_17818009.1| D-alanine--D-alanine ligase B [Escherichia coli FDA517]
gi|424087778|ref|ZP_17824080.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1996]
gi|424093987|ref|ZP_17829800.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1985]
gi|424100401|ref|ZP_17835610.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1990]
gi|424107224|ref|ZP_17841845.1| D-alanine--D-alanine ligase B [Escherichia coli 93-001]
gi|424113199|ref|ZP_17847398.1| D-alanine--D-alanine ligase B [Escherichia coli PA3]
gi|424119329|ref|ZP_17853088.1| D-alanine--D-alanine ligase B [Escherichia coli PA5]
gi|424144619|ref|ZP_17876427.1| D-alanine--D-alanine ligase B [Escherichia coli PA15]
gi|424150765|ref|ZP_17882071.1| D-alanine--D-alanine ligase B [Escherichia coli PA24]
gi|424260116|ref|ZP_17893052.1| D-alanine--D-alanine ligase B [Escherichia coli PA25]
gi|424260802|ref|ZP_17893388.1| D-alanine--D-alanine ligase B [Escherichia coli PA28]
gi|424417039|ref|ZP_17899159.1| D-alanine--D-alanine ligase B [Escherichia coli PA32]
gi|424453163|ref|ZP_17904750.1| D-alanine--D-alanine ligase B [Escherichia coli PA33]
gi|424459440|ref|ZP_17910450.1| D-alanine--D-alanine ligase B [Escherichia coli PA39]
gi|424472505|ref|ZP_17922217.1| D-alanine--D-alanine ligase B [Escherichia coli PA42]
gi|424478474|ref|ZP_17927763.1| D-alanine--D-alanine ligase B [Escherichia coli TW07945]
gi|424484499|ref|ZP_17933418.1| D-alanine--D-alanine ligase B [Escherichia coli TW09098]
gi|424490591|ref|ZP_17939068.1| D-alanine--D-alanine ligase B [Escherichia coli TW09195]
gi|424497713|ref|ZP_17945036.1| D-alanine--D-alanine ligase B [Escherichia coli EC4203]
gi|424503959|ref|ZP_17950784.1| D-alanine--D-alanine ligase B [Escherichia coli EC4196]
gi|424517782|ref|ZP_17962256.1| D-alanine--D-alanine ligase B [Escherichia coli TW14301]
gi|424523611|ref|ZP_17967678.1| D-alanine--D-alanine ligase B [Escherichia coli EC4421]
gi|424529815|ref|ZP_17973484.1| D-alanine--D-alanine ligase B [Escherichia coli EC4422]
gi|424535786|ref|ZP_17979094.1| D-alanine--D-alanine ligase B [Escherichia coli EC4013]
gi|424541675|ref|ZP_17984560.1| D-alanine--D-alanine ligase B [Escherichia coli EC4402]
gi|424548000|ref|ZP_17990262.1| D-alanine--D-alanine ligase B [Escherichia coli EC4439]
gi|424554290|ref|ZP_17996058.1| D-alanine--D-alanine ligase B [Escherichia coli EC4436]
gi|424560637|ref|ZP_18001963.1| D-alanine--D-alanine ligase B [Escherichia coli EC4437]
gi|424572843|ref|ZP_18013314.1| D-alanine--D-alanine ligase B [Escherichia coli EC1845]
gi|424584672|ref|ZP_18024292.1| D-alanine--D-alanine ligase B [Escherichia coli EC1863]
gi|425095485|ref|ZP_18498545.1| D-alanine--D-alanine ligase B [Escherichia coli 3.4870]
gi|425101570|ref|ZP_18504258.1| D-alanine--D-alanine ligase B [Escherichia coli 5.2239]
gi|425107427|ref|ZP_18509712.1| D-alanine--D-alanine ligase B [Escherichia coli 6.0172]
gi|425123239|ref|ZP_18524854.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0586]
gi|425129264|ref|ZP_18530407.1| D-alanine--D-alanine ligase B [Escherichia coli 8.2524]
gi|425135607|ref|ZP_18536376.1| D-alanine--D-alanine ligase B [Escherichia coli 10.0833]
gi|425153444|ref|ZP_18553031.1| D-alanine--D-alanine ligase B [Escherichia coli PA34]
gi|425159906|ref|ZP_18559116.1| D-alanine--D-alanine ligase B [Escherichia coli FDA506]
gi|425165421|ref|ZP_18564264.1| D-alanine--D-alanine ligase B [Escherichia coli FDA507]
gi|425171707|ref|ZP_18570144.1| D-alanine--D-alanine ligase B [Escherichia coli FDA504]
gi|425177509|ref|ZP_18575596.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1999]
gi|425183733|ref|ZP_18581393.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1997]
gi|425190467|ref|ZP_18587626.1| D-alanine--D-alanine ligase B [Escherichia coli NE1487]
gi|425196763|ref|ZP_18593455.1| D-alanine--D-alanine ligase B [Escherichia coli NE037]
gi|425203462|ref|ZP_18599624.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK2001]
gi|425209235|ref|ZP_18605007.1| D-alanine--D-alanine ligase B [Escherichia coli PA4]
gi|425215274|ref|ZP_18610628.1| D-alanine--D-alanine ligase B [Escherichia coli PA23]
gi|425221839|ref|ZP_18616734.1| D-alanine--D-alanine ligase B [Escherichia coli PA49]
gi|425228093|ref|ZP_18622525.1| D-alanine--D-alanine ligase B [Escherichia coli PA45]
gi|425234391|ref|ZP_18628385.1| D-alanine--D-alanine ligase B [Escherichia coli TT12B]
gi|425240366|ref|ZP_18634036.1| D-alanine--D-alanine ligase B [Escherichia coli MA6]
gi|425252233|ref|ZP_18645152.1| D-alanine--D-alanine ligase B [Escherichia coli CB7326]
gi|425258569|ref|ZP_18650974.1| D-alanine--D-alanine ligase B [Escherichia coli EC96038]
gi|425264688|ref|ZP_18656644.1| D-alanine--D-alanine ligase B [Escherichia coli 5412]
gi|425292064|ref|ZP_18682703.1| D-alanine--D-alanine ligase B [Escherichia coli PA38]
gi|425308847|ref|ZP_18698359.1| D-alanine--D-alanine ligase B [Escherichia coli EC1735]
gi|425314775|ref|ZP_18703893.1| D-alanine--D-alanine ligase B [Escherichia coli EC1736]
gi|425320851|ref|ZP_18709571.1| D-alanine--D-alanine ligase B [Escherichia coli EC1737]
gi|425327012|ref|ZP_18715284.1| D-alanine--D-alanine ligase B [Escherichia coli EC1846]
gi|425333200|ref|ZP_18720969.1| D-alanine--D-alanine ligase B [Escherichia coli EC1847]
gi|425339620|ref|ZP_18726901.1| D-alanine--D-alanine ligase B [Escherichia coli EC1848]
gi|425345498|ref|ZP_18732346.1| D-alanine--D-alanine ligase B [Escherichia coli EC1849]
gi|425351712|ref|ZP_18738133.1| D-alanine--D-alanine ligase B [Escherichia coli EC1850]
gi|425357699|ref|ZP_18743713.1| D-alanine--D-alanine ligase B [Escherichia coli EC1856]
gi|425363813|ref|ZP_18749415.1| D-alanine--D-alanine ligase B [Escherichia coli EC1862]
gi|425370246|ref|ZP_18755252.1| D-alanine--D-alanine ligase B [Escherichia coli EC1864]
gi|425389100|ref|ZP_18772634.1| D-alanine--D-alanine ligase B [Escherichia coli EC1866]
gi|425389741|ref|ZP_18773236.1| D-alanine--D-alanine ligase B [Escherichia coli EC1868]
gi|425395866|ref|ZP_18778946.1| D-alanine--D-alanine ligase B [Escherichia coli EC1869]
gi|425408022|ref|ZP_18790214.1| D-alanine--D-alanine ligase B [Escherichia coli EC1870]
gi|425408398|ref|ZP_18790587.1| D-alanine--D-alanine ligase B [Escherichia coli NE098]
gi|425414667|ref|ZP_18796338.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK523]
gi|425425817|ref|ZP_18806902.1| D-alanine--D-alanine ligase B [Escherichia coli 0.1304]
gi|428944449|ref|ZP_19017141.1| D-alanine--D-alanine ligase B [Escherichia coli 88.1467]
gi|428950623|ref|ZP_19022804.1| D-alanine--D-alanine ligase B [Escherichia coli 88.1042]
gi|428956469|ref|ZP_19028217.1| D-alanine--D-alanine ligase B [Escherichia coli 89.0511]
gi|428962836|ref|ZP_19034057.1| D-alanine--D-alanine ligase B [Escherichia coli 90.0091]
gi|428974760|ref|ZP_19045042.1| D-alanine--D-alanine ligase B [Escherichia coli 90.0039]
gi|428975370|ref|ZP_19045581.1| D-alanine--D-alanine ligase B [Escherichia coli 90.2281]
gi|428981103|ref|ZP_19050874.1| D-alanine--D-alanine ligase B [Escherichia coli 93.0055]
gi|428987424|ref|ZP_19056751.1| D-alanine--D-alanine ligase B [Escherichia coli 93.0056]
gi|428993235|ref|ZP_19062179.1| D-alanine--D-alanine ligase B [Escherichia coli 94.0618]
gi|428999327|ref|ZP_19067877.1| D-alanine--D-alanine ligase B [Escherichia coli 95.0183]
gi|429005564|ref|ZP_19073534.1| D-alanine--D-alanine ligase B [Escherichia coli 95.1288]
gi|429018136|ref|ZP_19084953.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0428]
gi|429030111|ref|ZP_19096020.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0939]
gi|429036264|ref|ZP_19101743.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0932]
gi|429042233|ref|ZP_19107271.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0107]
gi|429048067|ref|ZP_19112735.1| D-alanine--D-alanine ligase B [Escherichia coli 97.0003]
gi|429053197|ref|ZP_19117738.1| D-alanine--D-alanine ligase B [Escherichia coli 97.1742]
gi|429059130|ref|ZP_19123300.1| D-alanine--D-alanine ligase B [Escherichia coli 97.0007]
gi|429064512|ref|ZP_19128412.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0672]
gi|429071131|ref|ZP_19134499.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0678]
gi|429076361|ref|ZP_19139591.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0713]
gi|429823573|ref|ZP_19355130.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0109]
gi|429829944|ref|ZP_19360862.1| D-alanine--D-alanine ligase B [Escherichia coli 97.0010]
gi|444922288|ref|ZP_21242052.1| D-alanine--D-alanine ligase B [Escherichia coli 09BKT078844]
gi|444928606|ref|ZP_21247778.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0814]
gi|444934004|ref|ZP_21252969.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0815]
gi|444939574|ref|ZP_21258244.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0816]
gi|444945212|ref|ZP_21263650.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0839]
gi|444950697|ref|ZP_21268941.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0848]
gi|444956170|ref|ZP_21274195.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1753]
gi|444961472|ref|ZP_21279249.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1775]
gi|444967233|ref|ZP_21284719.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1793]
gi|444972738|ref|ZP_21290042.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1805]
gi|444978249|ref|ZP_21295257.1| D-alanine--D-alanine ligase B [Escherichia coli ATCC 700728]
gi|444983570|ref|ZP_21300446.1| D-alanine--D-alanine ligase B [Escherichia coli PA11]
gi|444988812|ref|ZP_21305563.1| D-alanine--D-alanine ligase B [Escherichia coli PA19]
gi|444999308|ref|ZP_21315790.1| D-alanine--D-alanine ligase B [Escherichia coli PA13]
gi|444999638|ref|ZP_21316113.1| D-alanine--D-alanine ligase B [Escherichia coli PA2]
gi|445005100|ref|ZP_21321454.1| D-alanine--D-alanine ligase B [Escherichia coli PA47]
gi|445010281|ref|ZP_21326487.1| D-alanine--D-alanine ligase B [Escherichia coli PA48]
gi|445016043|ref|ZP_21332104.1| D-alanine--D-alanine ligase B [Escherichia coli PA8]
gi|445021516|ref|ZP_21337450.1| D-alanine--D-alanine ligase B [Escherichia coli 7.1982]
gi|445026757|ref|ZP_21342546.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1781]
gi|445032233|ref|ZP_21347871.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1762]
gi|445037927|ref|ZP_21353410.1| D-alanine--D-alanine ligase B [Escherichia coli PA35]
gi|445043100|ref|ZP_21358449.1| D-alanine--D-alanine ligase B [Escherichia coli 3.4880]
gi|445048752|ref|ZP_21363935.1| D-alanine--D-alanine ligase B [Escherichia coli 95.0083]
gi|445054370|ref|ZP_21369332.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0670]
gi|452970060|ref|ZP_21968287.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4009]
gi|22095573|sp|Q8X9Y6.3|DDLB_ECO57 RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|12512798|gb|AAG54396.1|AE005186_2 D-alanine-D-alanine ligase B, affects cell division [Escherichia
coli O157:H7 str. EDL933]
gi|13359552|dbj|BAB33519.1| D-alanine-D-alanine ligase B [Escherichia coli O157:H7 str. Sakai]
gi|187767759|gb|EDU31603.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4196]
gi|188014545|gb|EDU52667.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4113]
gi|189000480|gb|EDU69466.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4076]
gi|189356982|gb|EDU75401.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4401]
gi|189359901|gb|EDU78320.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4486]
gi|189365902|gb|EDU84318.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4501]
gi|189370780|gb|EDU89196.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
gi|189376378|gb|EDU94794.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
gi|208725809|gb|EDZ75410.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4206]
gi|208734727|gb|EDZ83414.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4045]
gi|208741629|gb|EDZ89311.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4042]
gi|209161254|gb|ACI38687.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC4115]
gi|209746524|gb|ACI71569.1| D-alanine-D-alanine ligase B [Escherichia coli]
gi|209746526|gb|ACI71570.1| D-alanine-D-alanine ligase B [Escherichia coli]
gi|209746528|gb|ACI71571.1| D-alanine-D-alanine ligase B [Escherichia coli]
gi|209746532|gb|ACI71573.1| D-alanine-D-alanine ligase B [Escherichia coli]
gi|217321806|gb|EEC30230.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
TW14588]
gi|254590629|gb|ACT69990.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
gi|320190385|gb|EFW65035.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
EC1212]
gi|320642131|gb|EFX11482.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101]
gi|320647494|gb|EFX16289.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89]
gi|320652828|gb|EFX21066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687]
gi|320668838|gb|EFX35633.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61]
gi|326345188|gb|EGD68931.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125]
gi|326346958|gb|EGD70692.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044]
gi|377887315|gb|EHU51792.1| D-alanine--D-alanine ligase [Escherichia coli DEC3A]
gi|377888765|gb|EHU53236.1| D-alanine--D-alanine ligase [Escherichia coli DEC3B]
gi|377915366|gb|EHU79475.1| D-alanine--D-alanine ligase [Escherichia coli DEC3C]
gi|377919645|gb|EHU83683.1| D-alanine--D-alanine ligase [Escherichia coli DEC3D]
gi|377921831|gb|EHU85826.1| D-alanine--D-alanine ligase [Escherichia coli DEC3E]
gi|377922281|gb|EHU86273.1| D-alanine--D-alanine ligase [Escherichia coli DEC4A]
gi|377925780|gb|EHU89720.1| D-alanine--D-alanine ligase [Escherichia coli DEC4B]
gi|377933696|gb|EHU97540.1| D-alanine--D-alanine ligase [Escherichia coli DEC3F]
gi|377936076|gb|EHU99870.1| D-alanine--D-alanine ligase [Escherichia coli DEC4D]
gi|377936594|gb|EHV00388.1| D-alanine--D-alanine ligase [Escherichia coli DEC4C]
gi|377942617|gb|EHV06351.1| D-alanine--D-alanine ligase [Escherichia coli DEC4E]
gi|377953205|gb|EHV16786.1| D-alanine--D-alanine ligase [Escherichia coli DEC4F]
gi|386794111|gb|AFJ27145.1| D-alanine--D-alanine ligase [Escherichia coli Xuzhou21]
gi|390651495|gb|EIN29766.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1996]
gi|390654167|gb|EIN32220.1| D-alanine--D-alanine ligase B [Escherichia coli FDA517]
gi|390670922|gb|EIN47410.1| D-alanine--D-alanine ligase B [Escherichia coli 93-001]
gi|390674846|gb|EIN51011.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1990]
gi|390676273|gb|EIN52379.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1985]
gi|390689962|gb|EIN64864.1| D-alanine--D-alanine ligase B [Escherichia coli PA3]
gi|390694720|gb|EIN69278.1| D-alanine--D-alanine ligase B [Escherichia coli PA5]
gi|390711938|gb|EIN84896.1| D-alanine--D-alanine ligase B [Escherichia coli PA15]
gi|390716680|gb|EIN89475.1| D-alanine--D-alanine ligase B [Escherichia coli PA25]
gi|390721589|gb|EIN94283.1| D-alanine--D-alanine ligase B [Escherichia coli PA22]
gi|390735012|gb|EIO06441.1| D-alanine--D-alanine ligase B [Escherichia coli PA24]
gi|390738229|gb|EIO09447.1| D-alanine--D-alanine ligase B [Escherichia coli PA28]
gi|390753377|gb|EIO23100.1| D-alanine--D-alanine ligase B [Escherichia coli PA31]
gi|390753642|gb|EIO23319.1| D-alanine--D-alanine ligase B [Escherichia coli PA32]
gi|390758094|gb|EIO27562.1| D-alanine--D-alanine ligase B [Escherichia coli PA33]
gi|390763352|gb|EIO32601.1| D-alanine--D-alanine ligase B [Escherichia coli PA40]
gi|390778249|gb|EIO46007.1| D-alanine--D-alanine ligase B [Escherichia coli TW06591]
gi|390781326|gb|EIO49010.1| D-alanine--D-alanine ligase B [Escherichia coli PA42]
gi|390788406|gb|EIO55873.1| D-alanine--D-alanine ligase B [Escherichia coli PA39]
gi|390796020|gb|EIO63296.1| D-alanine--D-alanine ligase B [Escherichia coli TW10246]
gi|390802839|gb|EIO69868.1| D-alanine--D-alanine ligase B [Escherichia coli TW11039]
gi|390812281|gb|EIO78964.1| D-alanine--D-alanine ligase B [Escherichia coli TW07945]
gi|390812632|gb|EIO79308.1| D-alanine--D-alanine ligase B [Escherichia coli TW09109]
gi|390820310|gb|EIO86616.1| D-alanine--D-alanine ligase B [Escherichia coli TW10119]
gi|390824861|gb|EIO90810.1| D-alanine--D-alanine ligase B [Escherichia coli TW09098]
gi|390838016|gb|EIP02334.1| D-alanine--D-alanine ligase B [Escherichia coli EC4203]
gi|390841059|gb|EIP05030.1| D-alanine--D-alanine ligase B [Escherichia coli EC4196]
gi|390845379|gb|EIP09046.1| D-alanine--D-alanine ligase B [Escherichia coli TW09195]
gi|390856647|gb|EIP19218.1| D-alanine--D-alanine ligase B [Escherichia coli TW14301]
gi|390861440|gb|EIP23688.1| D-alanine--D-alanine ligase B [Escherichia coli EC4421]
gi|390872514|gb|EIP33803.1| D-alanine--D-alanine ligase B [Escherichia coli EC4422]
gi|390877724|gb|EIP38619.1| D-alanine--D-alanine ligase B [Escherichia coli EC4013]
gi|390887395|gb|EIP47371.1| D-alanine--D-alanine ligase B [Escherichia coli EC4402]
gi|390888941|gb|EIP48723.1| D-alanine--D-alanine ligase B [Escherichia coli EC4439]
gi|390896323|gb|EIP55713.1| D-alanine--D-alanine ligase B [Escherichia coli EC4436]
gi|390904425|gb|EIP63421.1| D-alanine--D-alanine ligase B [Escherichia coli EC1738]
gi|390912529|gb|EIP71181.1| D-alanine--D-alanine ligase B [Escherichia coli EC4437]
gi|390912655|gb|EIP71301.1| D-alanine--D-alanine ligase B [Escherichia coli EC1734]
gi|390914215|gb|EIP72759.1| D-alanine--D-alanine ligase B [Escherichia coli EC1863]
gi|390926661|gb|EIP84220.1| D-alanine--D-alanine ligase B [Escherichia coli EC1845]
gi|408073580|gb|EKH07889.1| D-alanine--D-alanine ligase B [Escherichia coli PA7]
gi|408077317|gb|EKH11525.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK920]
gi|408087329|gb|EKH20778.1| D-alanine--D-alanine ligase B [Escherichia coli PA34]
gi|408091934|gb|EKH25133.1| D-alanine--D-alanine ligase B [Escherichia coli FDA506]
gi|408097674|gb|EKH30557.1| D-alanine--D-alanine ligase B [Escherichia coli FDA507]
gi|408103855|gb|EKH36184.1| D-alanine--D-alanine ligase B [Escherichia coli FDA504]
gi|408111284|gb|EKH43035.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1999]
gi|408117391|gb|EKH48576.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK1997]
gi|408123088|gb|EKH53890.1| D-alanine--D-alanine ligase B [Escherichia coli NE1487]
gi|408131562|gb|EKH61604.1| D-alanine--D-alanine ligase B [Escherichia coli NE037]
gi|408133007|gb|EKH62924.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK2001]
gi|408142223|gb|EKH71604.1| D-alanine--D-alanine ligase B [Escherichia coli PA4]
gi|408150925|gb|EKH79443.1| D-alanine--D-alanine ligase B [Escherichia coli PA23]
gi|408154553|gb|EKH82884.1| D-alanine--D-alanine ligase B [Escherichia coli PA49]
gi|408159717|gb|EKH87769.1| D-alanine--D-alanine ligase B [Escherichia coli PA45]
gi|408167979|gb|EKH95432.1| D-alanine--D-alanine ligase B [Escherichia coli TT12B]
gi|408174081|gb|EKI01077.1| D-alanine--D-alanine ligase B [Escherichia coli MA6]
gi|408187952|gb|EKI13841.1| D-alanine--D-alanine ligase B [Escherichia coli CB7326]
gi|408193690|gb|EKI19208.1| D-alanine--D-alanine ligase B [Escherichia coli 5412]
gi|408194006|gb|EKI19506.1| D-alanine--D-alanine ligase B [Escherichia coli EC96038]
gi|408234624|gb|EKI57634.1| D-alanine--D-alanine ligase B [Escherichia coli PA38]
gi|408240798|gb|EKI63449.1| D-alanine--D-alanine ligase B [Escherichia coli EC1735]
gi|408250419|gb|EKI72279.1| D-alanine--D-alanine ligase B [Escherichia coli EC1736]
gi|408254574|gb|EKI76077.1| D-alanine--D-alanine ligase B [Escherichia coli EC1737]
gi|408260878|gb|EKI81927.1| D-alanine--D-alanine ligase B [Escherichia coli EC1846]
gi|408269487|gb|EKI89732.1| D-alanine--D-alanine ligase B [Escherichia coli EC1847]
gi|408271401|gb|EKI91528.1| D-alanine--D-alanine ligase B [Escherichia coli EC1848]
gi|408280362|gb|EKI99914.1| D-alanine--D-alanine ligase B [Escherichia coli EC1849]
gi|408286223|gb|EKJ05151.1| D-alanine--D-alanine ligase B [Escherichia coli EC1850]
gi|408289505|gb|EKJ08263.1| D-alanine--D-alanine ligase B [Escherichia coli EC1856]
gi|408301780|gb|EKJ19341.1| D-alanine--D-alanine ligase B [Escherichia coli EC1862]
gi|408302214|gb|EKJ19749.1| D-alanine--D-alanine ligase B [Escherichia coli EC1864]
gi|408303208|gb|EKJ20674.1| D-alanine--D-alanine ligase B [Escherichia coli EC1866]
gi|408319725|gb|EKJ35844.1| D-alanine--D-alanine ligase B [Escherichia coli EC1868]
gi|408320207|gb|EKJ36310.1| D-alanine--D-alanine ligase B [Escherichia coli EC1870]
gi|408332448|gb|EKJ47483.1| D-alanine--D-alanine ligase B [Escherichia coli EC1869]
gi|408338521|gb|EKJ53169.1| D-alanine--D-alanine ligase B [Escherichia coli NE098]
gi|408351254|gb|EKJ65045.1| D-alanine--D-alanine ligase B [Escherichia coli FRIK523]
gi|408353617|gb|EKJ67112.1| D-alanine--D-alanine ligase B [Escherichia coli 0.1304]
gi|408560654|gb|EKK36917.1| D-alanine--D-alanine ligase B [Escherichia coli 5.2239]
gi|408560893|gb|EKK37141.1| D-alanine--D-alanine ligase B [Escherichia coli 3.4870]
gi|408561510|gb|EKK37713.1| D-alanine--D-alanine ligase B [Escherichia coli 6.0172]
gi|408586159|gb|EKK60942.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0586]
gi|408592090|gb|EKK66483.1| D-alanine--D-alanine ligase B [Escherichia coli 8.2524]
gi|408593842|gb|EKK68150.1| D-alanine--D-alanine ligase B [Escherichia coli 10.0833]
gi|408606303|gb|EKK79750.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0416]
gi|408618303|gb|EKK91390.1| D-alanine--D-alanine ligase B [Escherichia coli 10.0821]
gi|427215797|gb|EKV84963.1| D-alanine--D-alanine ligase B [Escherichia coli 88.1042]
gi|427219238|gb|EKV88207.1| D-alanine--D-alanine ligase B [Escherichia coli 89.0511]
gi|427219488|gb|EKV88450.1| D-alanine--D-alanine ligase B [Escherichia coli 88.1467]
gi|427222858|gb|EKV91622.1| D-alanine--D-alanine ligase B [Escherichia coli 90.0039]
gi|427235341|gb|EKW02962.1| D-alanine--D-alanine ligase B [Escherichia coli 90.2281]
gi|427237943|gb|EKW05465.1| D-alanine--D-alanine ligase B [Escherichia coli 90.0091]
gi|427252323|gb|EKW18812.1| D-alanine--D-alanine ligase B [Escherichia coli 93.0056]
gi|427254123|gb|EKW20491.1| D-alanine--D-alanine ligase B [Escherichia coli 93.0055]
gi|427255204|gb|EKW21475.1| D-alanine--D-alanine ligase B [Escherichia coli 94.0618]
gi|427272221|gb|EKW36974.1| D-alanine--D-alanine ligase B [Escherichia coli 95.0183]
gi|427278904|gb|EKW43358.1| D-alanine--D-alanine ligase B [Escherichia coli 95.1288]
gi|427287419|gb|EKW51181.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0428]
gi|427294930|gb|EKW58084.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0939]
gi|427305628|gb|EKW68222.1| D-alanine--D-alanine ligase B [Escherichia coli 97.0003]
gi|427307812|gb|EKW70236.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0932]
gi|427312287|gb|EKW74443.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0107]
gi|427323513|gb|EKW85074.1| D-alanine--D-alanine ligase B [Escherichia coli 97.0007]
gi|427323724|gb|EKW85275.1| D-alanine--D-alanine ligase B [Escherichia coli 97.1742]
gi|427335436|gb|EKW96466.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0713]
gi|427335837|gb|EKW96866.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0678]
gi|427337295|gb|EKW98213.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0672]
gi|429260776|gb|EKY44307.1| D-alanine--D-alanine ligase B [Escherichia coli 96.0109]
gi|429262334|gb|EKY45676.1| D-alanine--D-alanine ligase B [Escherichia coli 97.0010]
gi|444543416|gb|ELV22678.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0814]
gi|444552118|gb|ELV29961.1| D-alanine--D-alanine ligase B [Escherichia coli 09BKT078844]
gi|444552690|gb|ELV30468.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0815]
gi|444566177|gb|ELV43013.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0839]
gi|444568389|gb|ELV45064.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0816]
gi|444572939|gb|ELV49340.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0848]
gi|444583796|gb|ELV59484.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1753]
gi|444586903|gb|ELV62383.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1775]
gi|444587203|gb|ELV62673.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1793]
gi|444601035|gb|ELV75844.1| D-alanine--D-alanine ligase B [Escherichia coli ATCC 700728]
gi|444601366|gb|ELV76173.1| D-alanine--D-alanine ligase B [Escherichia coli PA11]
gi|444602147|gb|ELV76902.1| D-alanine--D-alanine ligase B [Escherichia coli PA13]
gi|444609975|gb|ELV84411.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1805]
gi|444616506|gb|ELV90668.1| D-alanine--D-alanine ligase B [Escherichia coli PA19]
gi|444625139|gb|ELV99010.1| D-alanine--D-alanine ligase B [Escherichia coli PA2]
gi|444633685|gb|ELW07188.1| D-alanine--D-alanine ligase B [Escherichia coli PA48]
gi|444634008|gb|ELW07499.1| D-alanine--D-alanine ligase B [Escherichia coli PA47]
gi|444639311|gb|ELW12630.1| D-alanine--D-alanine ligase B [Escherichia coli PA8]
gi|444649107|gb|ELW22013.1| D-alanine--D-alanine ligase B [Escherichia coli 7.1982]
gi|444651267|gb|ELW24076.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1781]
gi|444655295|gb|ELW27914.1| D-alanine--D-alanine ligase B [Escherichia coli 99.1762]
gi|444664471|gb|ELW36659.1| D-alanine--D-alanine ligase B [Escherichia coli PA35]
gi|444668756|gb|ELW40756.1| D-alanine--D-alanine ligase B [Escherichia coli 3.4880]
gi|444673655|gb|ELW45281.1| D-alanine--D-alanine ligase B [Escherichia coli 95.0083]
gi|444675095|gb|ELW46576.1| D-alanine--D-alanine ligase B [Escherichia coli 99.0670]
Length = 306
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + V ++ L + +I S L + VKP+R+G S G++++ V A
Sbjct: 117 LTR-VEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-------VAENA 162
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L++ LR+ F +E+L
Sbjct: 163 LQDA-LRL-------------------------AFQHDEEVLI----------------- 179
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ ++PSV ++ SG E K+ PA + ++
Sbjct: 180 EKWLSGPEFTVAILGE-----EILPSVRIQPSGTFYDYEAKYLSDETQYFC--PAGLEAS 232
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 233 Q--EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA-- 287
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 288 RQAGMSFSQLVVRILEL 304
>gi|302558175|ref|ZP_07310517.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
gi|302475793|gb|EFL38886.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
Length = 385
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 122/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L L
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYL-- 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ R E + IVD E L VKPAR G S G+ ++ +DL+
Sbjct: 180 VIRPREWERDESAARRKIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DDLSALD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E +R H P+ L+ +
Sbjct: 232 EAIAE----------ARRHD--------PKFLV--------------------------E 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G SL + ++ E K+ I+ TP PA +
Sbjct: 248 AALRGREIECGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + + +E +A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 303 DEETAEVRRLAVEAF-DAASCEGLVRADFFLT-EDGEFVINEINTMPGFTP 351
>gi|432529393|ref|ZP_19766452.1| D-alanine-D-alanine ligase B [Escherichia coli KTE233]
gi|431058211|gb|ELD67620.1| D-alanine-D-alanine ligase B [Escherichia coli KTE233]
Length = 254
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 6 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 64
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 65 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 113
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 114 A-LRL-------------------------AFQHDEEVLI-----------------EKW 130
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 131 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 181
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 182 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 238
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 239 GMSFSQLVVRILEL 252
>gi|387890540|ref|YP_006320838.1| D-alanine--D-alanine ligase [Escherichia blattae DSM 4481]
gi|414593727|ref|ZP_11443369.1| D-alanine--D-alanine ligase [Escherichia blattae NBRC 105725]
gi|386925373|gb|AFJ48327.1| D-alanine--D-alanine ligase B [Escherichia blattae DSM 4481]
gi|403195335|dbj|GAB81021.1| D-alanine--D-alanine ligase [Escherichia blattae NBRC 105725]
Length = 306
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 140/337 (41%), Gaps = 97/337 (28%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T
Sbjct: 48 LTLKEQGFNKVFIALHGRGGEDGTLQGVLEYLDLPYTGSGVMASAITMDKLRT------- 100
Query: 476 ADLGVLTINKDVRRKEDLLKTPIV-----DIWHELTSKLQCKT------LCVKPARDGCS 524
K + + L P V DI H L ++L + L VKP+ +G S
Sbjct: 101 ---------KQLWQGAGLPVAPWVALRPEDIRHGLRAELAARIAALGMPLIVKPSCEGSS 151
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ +L + ALE L FE +TD ++
Sbjct: 152 VGMSKVNNQAEL---MPALE---------------------------LAFEH--DTDVLV 179
Query: 585 FSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
+W+ E T+ ++G+ ++PS+ ++ +G E K+
Sbjct: 180 ------------------EKWLSGPEFTIALLGE-----EILPSIRIQPAGVFYDYEAKY 216
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRIDAFVNVDNGEVLII 698
P S L L+A A Q G+ R+DA ++ D G+ ++
Sbjct: 217 LSDDTQYFCPAGLSDQQEAQLSA------LVAQAWQAVGCRGWGRVDAMLDSD-GQFYLL 269
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
EVNT PGMT +++ A Q M Q ++L+L
Sbjct: 270 EVNTSPGMTSHSLVPMAA--RQAEMTFSQLVVRILEL 304
>gi|309787232|ref|ZP_07681844.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
gi|308924810|gb|EFP70305.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
Length = 306
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 137/311 (44%), Gaps = 65/311 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L + +
Sbjct: 166 A-LRL-------------------------AFQHDEEVLIEKWLSGQ------------- 186
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E TV ++G+ ++PS+ ++ SG E K+ PA + +++ +
Sbjct: 187 -EFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ--EAN 236
Query: 666 KQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q M
Sbjct: 237 LQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQAGMS 293
Query: 725 PHQFFRKVLDL 735
Q ++L+L
Sbjct: 294 FSQLVVRILEL 304
>gi|419207035|ref|ZP_13750166.1| D-alanine--D-alanine ligase [Escherichia coli DEC8C]
gi|419877383|ref|ZP_14398975.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9534]
gi|419879779|ref|ZP_14401205.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9545]
gi|420103156|ref|ZP_14614069.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9455]
gi|420111761|ref|ZP_14621583.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9553]
gi|424764741|ref|ZP_18192158.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CFSAN001630]
gi|378064577|gb|EHW26737.1| D-alanine--D-alanine ligase [Escherichia coli DEC8C]
gi|388340193|gb|EIL06459.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9534]
gi|388370739|gb|EIL34250.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9545]
gi|394397945|gb|EJE74171.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9553]
gi|394408979|gb|EJE83570.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CVM9455]
gi|421937144|gb|EKT94762.1| D-alanine--D-alanine ligase [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 306
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLEQMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|218698515|ref|YP_002406144.1| D-alanine--D-alanine ligase [Escherichia coli IAI39]
gi|386622505|ref|YP_006142233.1| D-alanine--D-alanine ligase [Escherichia coli O7:K1 str. CE10]
gi|218368501|emb|CAR16236.1| D-alanine:D-alanine ligase [Escherichia coli IAI39]
gi|349736243|gb|AEQ10949.1| D-alanine:D-alanine ligase [Escherichia coli O7:K1 str. CE10]
Length = 306
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 143/317 (45%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +T
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVT 116
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + ++ L + +I S L + VKP+R+G S G++++ V A
Sbjct: 117 LTR-AEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-------VAENA 162
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L++ LR+ F +E+L
Sbjct: 163 LQDA-LRL-------------------------AFQHDEEVLI----------------- 179
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ ++PS+ ++ SG E K+ PA + ++
Sbjct: 180 EKWLSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEAS 232
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 233 Q--EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA-- 287
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 288 RQAGMSFSQLVVRILEL 304
>gi|424131551|ref|ZP_17864407.1| D-alanine--D-alanine ligase B [Escherichia coli PA10]
gi|424465903|ref|ZP_17916140.1| D-alanine--D-alanine ligase B [Escherichia coli PA41]
gi|425141553|ref|ZP_18541885.1| D-alanine--D-alanine ligase B [Escherichia coli 10.0869]
gi|429011926|ref|ZP_19079215.1| D-alanine--D-alanine ligase B [Escherichia coli 95.0943]
gi|390709541|gb|EIN82623.1| D-alanine--D-alanine ligase B [Escherichia coli PA10]
gi|390777231|gb|EIO45075.1| D-alanine--D-alanine ligase B [Escherichia coli PA41]
gi|408605594|gb|EKK79088.1| D-alanine--D-alanine ligase B [Escherichia coli 10.0869]
gi|427271671|gb|EKW36462.1| D-alanine--D-alanine ligase B [Escherichia coli 95.0943]
Length = 281
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +
Sbjct: 33 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 91
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + V ++ L + +I S L + VKP+R+G S G++++ V A
Sbjct: 92 LTR-VEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-------VAENA 137
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L++ LR+ F +E+L
Sbjct: 138 LQDA-LRL-------------------------AFQHDEEVLI----------------- 154
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ ++PSV ++ SG E K+ PA + ++
Sbjct: 155 EKWLSGPEFTVAILGE-----EILPSVRIQPSGTFYDYEAKYLSDETQYFC--PAGLEAS 207
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 208 Q--EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA-- 262
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 263 RQAGMSFSQLVVRILEL 279
>gi|294635011|ref|ZP_06713528.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
gi|451965707|ref|ZP_21918964.1| D-alanine--D-alanine ligase B [Edwardsiella tarda NBRC 105688]
gi|291091610|gb|EFE24171.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
gi|451315509|dbj|GAC64326.1| D-alanine--D-alanine ligase B [Edwardsiella tarda NBRC 105688]
Length = 307
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 125/312 (40%), Gaps = 67/312 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ S + A L V
Sbjct: 59 VFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKL-RSKQVWQAAGLPVAPYVA 117
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + D + +D E+ L VKP+R+G S G++++
Sbjct: 118 ISREQFD--EGLTMDTLREINDL--GLPLIVKPSREGSSVGMSKV--------------- 158
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEI--LIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
N P E + E DEIL
Sbjct: 159 --------------------NEPCEFDPALVEALRHDDEILIEKCLVGP----------- 187
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E TV IG ++PS+ +K +G+ E K+ P S +S E
Sbjct: 188 ---EYTVAFIG-----DEILPSIRIKAAGEFYDYEAKYLSDKTEYFCP---SGLSAEQEQ 236
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
++ AL G+ R+D + ++G ++EVNT PGMT +++ A Q M
Sbjct: 237 SLATLVKRAYQALGCSGWGRVDVMQD-ESGRFCLLEVNTAPGMTSHSLVPMAA--RQAGM 293
Query: 724 YPHQFFRKVLDL 735
Q ++L+L
Sbjct: 294 SFSQLVVRILEL 305
>gi|417370741|ref|ZP_12141519.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353610058|gb|EHC63156.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
Length = 306
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 131/314 (41%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLDLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis
108]
gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis
108]
Length = 364
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 134/343 (39%), Gaps = 99/343 (28%)
Query: 420 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 472
K+N+AT VF +HG GEDGT+Q LLE +PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 473 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLA---------------------------------LAIHEAFLYDTK 215
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 636
IL Q+ N EI V+G V V E G+I+ S
Sbjct: 216 ILI-EQAINAR-------------EIECAVLGN--------DDVFVSEPGEIIPSREFYS 253
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ + + P + + E +++ K I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDNSSELIIP---ARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVDKDTNKVY 310
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVNT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--SISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 35/225 (15%)
Query: 22 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVE 81
S ++F+ S V VKP +GSS+G++ A D L D ++++E
Sbjct: 162 SAKKDYFIRRIESEFSYPVFVKPANSGSSVGISKAKDREDLALAIHEAFL--YDTKILIE 219
Query: 82 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 141
+ E VL F P ++P+ RE ++Y KY+
Sbjct: 220 QAI-NAREIECAVLGNDDVFVSEPGEIIPS------------RE---FYSYEAKYIDNSS 263
Query: 142 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 201
P R P VI I++ A+ +++ C AR+D +F+ T+
Sbjct: 264 -ELIIPARLPKEVIEEIKDLAARIYKIFECCGMARVD-FFVDKDTN-------------- 307
Query: 202 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+ F ++N I G S + G +S ++ +I A +
Sbjct: 308 -KVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
>gi|336248737|ref|YP_004592447.1| D-alanine--D-alanine ligase [Enterobacter aerogenes KCTC 2190]
gi|334734793|gb|AEG97168.1| D-alanine--D-alanine ligase [Enterobacter aerogenes KCTC 2190]
Length = 306
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 134/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + V E + L + +KP+R+G S G++++ E
Sbjct: 117 LTRAQFNAGLSAGVS---EQIAALGLPVI-IKPSREGSSVGMSKVS------------ES 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
C ++ ++ + A F DE+L +W
Sbjct: 161 CAMQ---DALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P A
Sbjct: 183 LSGPEFTVAIVGE-----EILPSIRIQAAGTFYDYEAKYLSDETQYFCPG----FEEPAR 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A N L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 ESEIQSLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++LDL
Sbjct: 291 GMSFSQLVVRILDL 304
>gi|393763163|ref|ZP_10351786.1| D-alanine--D-alanine ligase [Alishewanella agri BL06]
gi|392606080|gb|EIW88968.1| D-alanine--D-alanine ligase [Alishewanella agri BL06]
Length = 303
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 75/291 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFI +HG GEDGT+Q L+ G+PYTG GV+ S MDK+ G+ T
Sbjct: 57 VFIVLHGRGGEDGTMQGALQQLGLPYTGSGVLGSALAMDKIRCKWLFQA---QGLPTAPF 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V R D T + +L K + VKPA +G S G++ A++L
Sbjct: 114 LVVRPGD---TDYATMLQQLGGK-----VMVKPANEGSSIGMSAASTADELA-------- 157
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ + AH + E+L+ RW
Sbjct: 158 -------TAIATAHQYDQ------EVLV-----------------------------ERW 175
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E T+ ++ ++P V ++ E K+Q + L P P + T A+
Sbjct: 176 INGREFTIAILNG-----QVLPIVEMRTPRAFYDYEAKYQANSTEYLCPAPLTAELTAAM 230
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
Q+ L A NA+ G+ R+D ++ NG+ ++EVNTVPGMT +++
Sbjct: 231 ----QQSALAAFNAVGASGWGRVDLMLD-QNGQHYLLEVNTVPGMTEKSLV 276
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 47/242 (19%)
Query: 4 QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSL 63
QG T P +++ + + + + L GKV+VKP GSSIG++ A D L
Sbjct: 106 QGLPTAPFLVVRPGDTDYATM--------LQQLGGKVMVKPANEGSSIGMSAA-STADEL 156
Query: 64 KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV 123
A + D V+VE ++ G EFT +L+ +LP V++
Sbjct: 157 ATAIATAHQ-YDQEVLVERWING-REFTIAILNG---------QVLPI---------VEM 196
Query: 124 REKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 183
R A ++Y KY Y P + ++++ A F +G + R+D
Sbjct: 197 RTPRAFYDYEAKY-QANSTEYLCPAPLTAELTAAMQQSALAAFNAVGASGWGRVDLMLDQ 255
Query: 184 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 243
+ H ++N + GM + S + A G+S ++ I+ A
Sbjct: 256 NGQH-----------------YLLEVNTVPGMTEKSLVPMAAKAAGYSFQQLVLAILQQA 298
Query: 244 CS 245
S
Sbjct: 299 QS 300
>gi|257438472|ref|ZP_05614227.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165]
gi|257199051|gb|EEU97335.1| D-ala D-ala ligase N-terminal domain protein [Faecalibacterium
prausnitzii A2-165]
Length = 365
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 115/284 (40%), Gaps = 59/284 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V A+HG GEDGT+Q LLE G+PY G GV+AS CMDK N L D + K
Sbjct: 105 VIPALHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVA----NALFDAAGIPHTK 160
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK-ALE 544
+ +++ + + +KL VKPA G S G+ + ++L + ALE
Sbjct: 161 WLSACRWEIESDLDGVCDGAIAKLGWPIF-VKPANAGSSVGITKAHDRDELKQAIALALE 219
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
++FE FV+ E+ + ++ +R
Sbjct: 220 N-----------------------DHKVVFEAFVDGHEVECAVIGSDPAV-------ATR 249
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
EI G + + ++K++ G + P + +S E LD+
Sbjct: 250 PGEILAG--------------------AEFYTYDDKYKNGVSQVVIP---ARLSEEKLDE 286
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
K + AL EG +R D FV V+I E+NT PG TP
Sbjct: 287 VKTYAAMAYTALNCEGLARCDFFVEHGTDRVMINEINTFPGFTP 330
>gi|410088643|ref|ZP_11285333.1| D-alanine--D-alanine ligase [Morganella morganii SC01]
gi|409764889|gb|EKN49014.1| D-alanine--D-alanine ligase [Morganella morganii SC01]
Length = 305
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 137/326 (42%), Gaps = 78/326 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT----SLAL 472
+L ++ VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T + A
Sbjct: 49 RLKEDGFTKVFIALHGRGGEDGTLQGCLEQMGLPYTGSGVMASALSMDKLRTKQLWAGAG 108
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+A ++ + + ++ L+ + + + + VKP+ +G S G++++
Sbjct: 109 LPIAPYFAISAARFAQISDEELQQGVAPLGY---------PVIVKPSLEGSSVGMSKVDN 159
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
A+ L ALEE F ++L
Sbjct: 160 AQALR---PALEEA------------------------------FKHDKDVLV------- 179
Query: 593 NADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
+W+ E TVG +G+ ++PS+ ++ + E K+
Sbjct: 180 ----------EKWLSGPEFTVGFLGE-----QMLPSIRIQPAAVFYDYEAKYVSDDTQYF 224
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P TE + K + A+ EG+ R+D ++ D G+ ++EVNT PGMT
Sbjct: 225 CPGLEGARETEIRELAKAAYK----AVGCEGWGRVDVMLDSD-GQFYLLEVNTSPGMTNH 279
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDL 735
+ L+ QA + Q M F VL L
Sbjct: 280 S-LVPQA-ARQAGMSFSAFVADVLAL 303
>gi|419363375|ref|ZP_13904560.1| D-alanine--D-alanine ligase [Escherichia coli DEC13E]
gi|419405241|ref|ZP_13945952.1| D-alanine--D-alanine ligase [Escherichia coli DEC15C]
gi|378220453|gb|EHX80711.1| D-alanine--D-alanine ligase [Escherichia coli DEC13E]
gi|378241996|gb|EHY01962.1| D-alanine--D-alanine ligase [Escherichia coli DEC15C]
Length = 298
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 50 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 108
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 109 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 157
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 158 A-LRL-------------------------AFQHDEEVLI-----------------EKW 174
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 175 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 225
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 226 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 282
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 283 GMSFSQLVVRILEL 296
>gi|430761866|ref|YP_007217723.1| D-alanine--D-alanine ligase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430011490|gb|AGA34242.1| D-alanine--D-alanine ligase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 314
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 120/298 (40%), Gaps = 82/298 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVL 481
FIA+HG GEDGT+Q L+ GVPYTG GV+ S MDK+A A +L
Sbjct: 67 AFIALHGTGGEDGTIQGCLDIAGVPYTGSGVLGSALGMDKLACKRLWGGTNLPSAPYRLL 126
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ + D D L P++ VKP+R G S G++R+ TV ++
Sbjct: 127 SADSDPEAVADALGLPLI----------------VKPSRGGSSLGLSRVQS----TVELQ 166
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A + R P F+
Sbjct: 167 AAYDEARRHPGAVFAE-------------------------------------------- 182
Query: 602 NSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
+W+ E TV ++ + +P + ++ G+ K++ T PPP +
Sbjct: 183 --QWIVGREFTVAIVA-----NEPLPVIQIETPGNFYDYHAKYEADTTRYRCPPP---LD 232
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ AL + + A+ +G+ R+D +V +GE +IEVNTVPGMT +++ A
Sbjct: 233 SAALIELQTLALSAFAAIDGDGWGRVDLLQDV-HGENYLIEVNTVPGMTDHSLVPKAA 289
>gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271]
gi|229485974|sp|B4S8W3.1|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271]
Length = 360
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 169/429 (39%), Gaps = 110/429 (25%)
Query: 282 VFVIFGGDTSERQVSLMSGTNV--WLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDS 339
V +IFGG ++E ++S++S + ++ +A+ E+ P + G D ++
Sbjct: 6 VALIFGGQSTEHEISIISARAIANHIDTEAY---ELYPIYV--------GHDGAWFKGET 54
Query: 340 SSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTG 399
+ +V+ L +L +T+ + + + I S RN+ + D E G
Sbjct: 55 AQKVL-DLDMPAMLANTSADTIRERLREIS------FSDPRNRFLFDFSE--------EG 99
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
D+A LP+ +HG GEDG +Q LL+ VPYTG GV AS
Sbjct: 100 IDVA--LPI---------------------IHGSTGEDGKIQGLLDMFSVPYTGCGVHAS 136
Query: 460 KTCMDKVATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
MDK T + H + T + +R ++D + V I E T VKP
Sbjct: 137 AMTMDKETTKICAEHAGLHIAPYTTIRKLRYQQDPQQVVSV-ILEEFTLP-----FFVKP 190
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
A G S G+ ++ E+L ALE+ + V
Sbjct: 191 ASQGSSIGITKVHRPEELAA---ALEKAFM-----------------------------V 218
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+T +++ + EI V V+G + S+ P V+ GD
Sbjct: 219 DT---------------KVLIEKTIEGREIEVAVLGNDSPVASV-PG-EVEPGGDFYDFT 261
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
+K+ G P + + E L K AL+ G SR+D F+ G++++
Sbjct: 262 DKYINGKASLHIP---ARLPEEVLQKVSTEALKAYRALECRGMSRVDFFIEHATGKIILN 318
Query: 699 EVNTVPGMT 707
E+NTVPG T
Sbjct: 319 EINTVPGFT 327
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 43/196 (21%)
Query: 42 VKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP GSSIG+T + + +L+KA +D +V++E +E G E VL
Sbjct: 188 VKPASQGSSIGITKVHRPEELAAALEKAF-----MVDTKVLIEKTIE-GREIEVAVLGND 241
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
S PV +P EVE +++ KY+ + + H P R P V+ +
Sbjct: 242 S-----PVASVPGEVE----------PGGDFYDFTDKYI-NGKASLHIPARLPEEVLQKV 285
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
A ++ L +R+D +F+ +T G I+ +IN + G
Sbjct: 286 STEALKAYRALECRGMSRVD-FFIEHAT---------------GKIILNEINTVPGFTGI 329
Query: 219 SF--LFQQASKVGFSH 232
S + AS + FS
Sbjct: 330 SMYPMMMDASGIDFSQ 345
>gi|15599396|ref|NP_252890.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
gi|418588086|ref|ZP_13152102.1| D-alanine--D-alanine ligase A [Pseudomonas aeruginosa MPAO1/P1]
gi|418593755|ref|ZP_13157586.1| D-alanine--D-alanine ligase A [Pseudomonas aeruginosa MPAO1/P2]
gi|421518751|ref|ZP_15965425.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO579]
gi|39931187|sp|Q9HWI0.1|DDLA_PSEAE RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|9950412|gb|AAG07588.1|AE004836_7 D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
gi|375041139|gb|EHS33855.1| D-alanine--D-alanine ligase A [Pseudomonas aeruginosa MPAO1/P1]
gi|375046342|gb|EHS38905.1| D-alanine--D-alanine ligase A [Pseudomonas aeruginosa MPAO1/P2]
gi|404348233|gb|EJZ74582.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO579]
Length = 346
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 169/438 (38%), Gaps = 138/438 (31%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG + ER VS+ SG V L++ + ++D +SG
Sbjct: 7 KVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVL-------AVDTASG----------- 48
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
L+ +LA+ ++ + PD + ++ + L G
Sbjct: 49 ----------LLGAEEERRLLASKVKEVPPDSDSLA------IIRSGKQSLLSAGELAGV 92
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ F+A+HGG GEDGTLQ+LL+A G YTG G +AS
Sbjct: 93 DV-----------------------FFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASA 129
Query: 461 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK VA L L GV T + L P + E+ +L L VKP
Sbjct: 130 MAMDKDVAKRLFLAA----GVETAS--------WLMAPASE--EEVREQLGF-PLVVKPN 174
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G + G S H E+ +P +E
Sbjct: 175 SQGSTVG----------------------------LSIVHSQAEL----------QPAIE 196
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLE 638
+ D +M + E+TVGV+ +P + G ++ E
Sbjct: 197 L---------AGRYGDEVMLERFVAGREVTVGVLDD-----QALPVGEILLGGQEVFDYE 242
Query: 639 EKFQGGTGINLTP---PPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGE 694
K+Q G + P PPA ++ EA QR+ L + AL+L G+SR D F + G
Sbjct: 243 HKYQAGAVREVFPADLPPA--IAAEA-----QRLALKVHRALKLSGYSRTD-FRLDEQGR 294
Query: 695 VLIIEVNTVPGMTPSTVL 712
+ +EVNT+PGMT +++L
Sbjct: 295 LWCLEVNTLPGMTATSLL 312
>gi|419326905|ref|ZP_13868543.1| D-alanine--D-alanine ligase B [Escherichia coli DEC12C]
gi|378177805|gb|EHX38593.1| D-alanine--D-alanine ligase B [Escherichia coli DEC12C]
Length = 306
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|16128085|ref|NP_414634.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
MG1655]
gi|74310711|ref|YP_309130.1| D-alanine--D-alanine ligase [Shigella sonnei Ss046]
gi|157159563|ref|YP_001456881.1| D-alanine--D-alanine ligase [Escherichia coli HS]
gi|170021552|ref|YP_001726506.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
gi|170079731|ref|YP_001729051.1| D-alanine--D-alanine ligase [Escherichia coli str. K-12 substr.
DH10B]
gi|188494627|ref|ZP_03001897.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
gi|193065887|ref|ZP_03046948.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
gi|194429381|ref|ZP_03061906.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
gi|209917285|ref|YP_002291369.1| D-alanine--D-alanine ligase [Escherichia coli SE11]
gi|218703352|ref|YP_002410871.1| D-alanine--D-alanine ligase [Escherichia coli UMN026]
gi|238899493|ref|YP_002925289.1| D-alanine--D-alanine ligase [Escherichia coli BW2952]
gi|260866245|ref|YP_003232647.1| D-alanine--D-alanine ligase [Escherichia coli O111:H- str. 11128]
gi|293403164|ref|ZP_06647261.1| ddl [Escherichia coli FVEC1412]
gi|293408183|ref|ZP_06652023.1| conserved hypothetical protein [Escherichia coli B354]
gi|293417968|ref|ZP_06660590.1| D-alanine-D-alanine ligase [Escherichia coli B185]
gi|300816130|ref|ZP_07096353.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
gi|300821903|ref|ZP_07102047.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
gi|300900877|ref|ZP_07119014.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
gi|300905501|ref|ZP_07123265.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
gi|300919647|ref|ZP_07136138.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
gi|300923126|ref|ZP_07139186.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
gi|300949890|ref|ZP_07163853.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
gi|300955958|ref|ZP_07168291.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
gi|301026100|ref|ZP_07189575.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
gi|301028575|ref|ZP_07191805.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
gi|301303807|ref|ZP_07209927.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
gi|301330127|ref|ZP_07222796.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
gi|301646404|ref|ZP_07246286.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
gi|307311457|ref|ZP_07591099.1| D-alanine/D-alanine ligase [Escherichia coli W]
gi|312970186|ref|ZP_07784368.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
gi|331640545|ref|ZP_08341693.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli H736]
gi|331661466|ref|ZP_08362390.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli TA143]
gi|331666329|ref|ZP_08367210.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli TA271]
gi|331680666|ref|ZP_08381325.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli H591]
gi|331681477|ref|ZP_08382114.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli H299]
gi|378714566|ref|YP_005279459.1| D-alanine--D-alanine ligase [Escherichia coli KO11FL]
gi|383176689|ref|YP_005454694.1| D-alanine--D-alanine ligase [Shigella sonnei 53G]
gi|386279139|ref|ZP_10056827.1| D-alanine-D-alanine ligase B [Escherichia sp. 4_1_40B]
gi|386597012|ref|YP_006093412.1| D-alanine--D-alanine ligase [Escherichia coli DH1]
gi|386607398|ref|YP_006122884.1| D-alanine--D-alanine ligase [Escherichia coli W]
gi|386612255|ref|YP_006131921.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88]
gi|386698593|ref|YP_006162430.1| D-alanine--D-alanine ligase [Escherichia coli KO11FL]
gi|386703298|ref|YP_006167145.1| D-alanine--D-alanine ligase [Escherichia coli P12b]
gi|386707823|ref|YP_006171544.1| D-alanine--D-alanine ligase [Escherichia coli W]
gi|387605572|ref|YP_006094428.1| D-alanine--D-alanine ligase [Escherichia coli 042]
gi|387610567|ref|YP_006113683.1| D-alanine--D-alanine ligase [Escherichia coli ETEC H10407]
gi|387619863|ref|YP_006127490.1| ddl [Escherichia coli DH1]
gi|388476213|ref|YP_488397.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
W3110]
gi|415777578|ref|ZP_11488777.1| D-alanine--D-alanine ligase B [Escherichia coli 3431]
gi|415802048|ref|ZP_11499903.1| D-alanine--D-alanine ligase B [Escherichia coli E128010]
gi|415814179|ref|ZP_11505809.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68]
gi|415823899|ref|ZP_11512274.1| D-alanine--D-alanine ligase B [Escherichia coli OK1180]
gi|415832425|ref|ZP_11517878.1| D-alanine--D-alanine ligase B [Escherichia coli OK1357]
gi|415849846|ref|ZP_11526917.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G]
gi|415873196|ref|ZP_11540474.1| D-alanine--D-alanine ligase B [Escherichia coli MS 79-10]
gi|416343008|ref|ZP_11677012.1| D-alanylalanine synthetase [Escherichia coli EC4100B]
gi|417132369|ref|ZP_11977154.1| D-alanine--D-alanine ligase [Escherichia coli 5.0588]
gi|417142994|ref|ZP_11985375.1| D-alanine--D-alanine ligase [Escherichia coli 97.0259]
gi|417157831|ref|ZP_11995455.1| D-alanine--D-alanine ligase [Escherichia coli 96.0497]
gi|417174665|ref|ZP_12004461.1| D-alanine--D-alanine ligase [Escherichia coli 3.2608]
gi|417181863|ref|ZP_12008699.1| D-alanine--D-alanine ligase [Escherichia coli 93.0624]
gi|417190673|ref|ZP_12013269.1| D-alanine--D-alanine ligase [Escherichia coli 4.0522]
gi|417216912|ref|ZP_12023584.1| D-alanine--D-alanine ligase [Escherichia coli JB1-95]
gi|417225006|ref|ZP_12028297.1| D-alanine--D-alanine ligase [Escherichia coli 96.154]
gi|417230050|ref|ZP_12031636.1| D-alanine--D-alanine ligase [Escherichia coli 5.0959]
gi|417247099|ref|ZP_12040200.1| D-alanine--D-alanine ligase [Escherichia coli 9.0111]
gi|417252609|ref|ZP_12044368.1| D-alanine--D-alanine ligase [Escherichia coli 4.0967]
gi|417263465|ref|ZP_12050874.1| D-alanine--D-alanine ligase [Escherichia coli 2.3916]
gi|417268719|ref|ZP_12056079.1| D-alanine--D-alanine ligase [Escherichia coli 3.3884]
gi|417277943|ref|ZP_12065263.1| D-alanine--D-alanine ligase [Escherichia coli 3.2303]
gi|417294127|ref|ZP_12081406.1| D-alanine--D-alanine ligase [Escherichia coli B41]
gi|417584158|ref|ZP_12234952.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_B2F1]
gi|417584908|ref|ZP_12235692.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_C165-02]
gi|417589708|ref|ZP_12240429.1| D-alanine--D-alanine ligase B [Escherichia coli 2534-86]
gi|417594934|ref|ZP_12245610.1| D-alanine--D-alanine ligase B [Escherichia coli 3030-1]
gi|417600343|ref|ZP_12250932.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_94C]
gi|417611102|ref|ZP_12261578.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_EH250]
gi|417616428|ref|ZP_12266868.1| D-alanine--D-alanine ligase B [Escherichia coli G58-1]
gi|417621316|ref|ZP_12271648.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_H.1.8]
gi|417632008|ref|ZP_12282234.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_MHI813]
gi|417632565|ref|ZP_12282789.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_S1191]
gi|417637351|ref|ZP_12287535.1| D-alanine--D-alanine ligase B [Escherichia coli TX1999]
gi|417944259|ref|ZP_12587503.1| D-alanine--D-alanine ligase [Escherichia coli XH140A]
gi|417975997|ref|ZP_12616793.1| D-alanine--D-alanine ligase [Escherichia coli XH001]
gi|418261506|ref|ZP_12883500.1| D-alanine--D-alanine ligase [Shigella sonnei str. Moseley]
gi|418300981|ref|ZP_12912775.1| D-alanine--D-alanine ligase B [Escherichia coli UMNF18]
gi|418942494|ref|ZP_13495766.1| D-alanine--D-alanine ligase [Escherichia coli O157:H43 str. T22]
gi|418959540|ref|ZP_13511438.1| D-alanine/D-alanine ligase [Escherichia coli J53]
gi|419140458|ref|ZP_13685218.1| D-alanine--D-alanine ligase B [Escherichia coli DEC6A]
gi|419146036|ref|ZP_13690734.1| D-alanine--D-alanine ligase [Escherichia coli DEC6B]
gi|419151929|ref|ZP_13696522.1| D-alanine--D-alanine ligase B [Escherichia coli DEC6C]
gi|419157345|ref|ZP_13701877.1| D-alanine--D-alanine ligase B [Escherichia coli DEC6D]
gi|419162351|ref|ZP_13706832.1| D-alanine--D-alanine ligase [Escherichia coli DEC6E]
gi|419168058|ref|ZP_13712459.1| D-alanine--D-alanine ligase B [Escherichia coli DEC7A]
gi|419173435|ref|ZP_13717297.1| D-alanine--D-alanine ligase [Escherichia coli DEC7B]
gi|419179109|ref|ZP_13722736.1| D-alanine--D-alanine ligase [Escherichia coli DEC7C]
gi|419184566|ref|ZP_13728092.1| D-alanine--D-alanine ligase [Escherichia coli DEC7D]
gi|419189832|ref|ZP_13733305.1| D-alanine--D-alanine ligase B [Escherichia coli DEC7E]
gi|419195045|ref|ZP_13738460.1| D-alanine--D-alanine ligase B [Escherichia coli DEC8A]
gi|419201260|ref|ZP_13744492.1| D-alanine--D-alanine ligase [Escherichia coli DEC8B]
gi|419213462|ref|ZP_13756497.1| D-alanine--D-alanine ligase [Escherichia coli DEC8D]
gi|419219301|ref|ZP_13762262.1| D-alanine--D-alanine ligase [Escherichia coli DEC8E]
gi|419224730|ref|ZP_13767626.1| D-alanine--D-alanine ligase [Escherichia coli DEC9A]
gi|419230586|ref|ZP_13773383.1| D-alanine--D-alanine ligase [Escherichia coli DEC9B]
gi|419235897|ref|ZP_13778651.1| D-alanine--D-alanine ligase [Escherichia coli DEC9C]
gi|419241484|ref|ZP_13784137.1| D-alanine--D-alanine ligase [Escherichia coli DEC9D]
gi|419246886|ref|ZP_13789506.1| D-alanine--D-alanine ligase [Escherichia coli DEC9E]
gi|419258667|ref|ZP_13801131.1| D-alanine--D-alanine ligase [Escherichia coli DEC10B]
gi|419276030|ref|ZP_13818308.1| D-alanine--D-alanine ligase [Escherichia coli DEC10D]
gi|419281719|ref|ZP_13823944.1| D-alanine--D-alanine ligase [Escherichia coli DEC10F]
gi|419292760|ref|ZP_13834838.1| D-alanine--D-alanine ligase [Escherichia coli DEC11A]
gi|419298080|ref|ZP_13840108.1| D-alanine--D-alanine ligase [Escherichia coli DEC11B]
gi|419298272|ref|ZP_13840298.1| D-alanine--D-alanine ligase B [Escherichia coli DEC11C]
gi|419304594|ref|ZP_13846511.1| D-alanine--D-alanine ligase B [Escherichia coli DEC11D]
gi|419309631|ref|ZP_13851511.1| D-alanine--D-alanine ligase B [Escherichia coli DEC11E]
gi|419314932|ref|ZP_13856765.1| D-alanine--D-alanine ligase B [Escherichia coli DEC12A]
gi|419320727|ref|ZP_13862473.1| D-alanine--D-alanine ligase [Escherichia coli DEC12B]
gi|419332344|ref|ZP_13873912.1| D-alanine--D-alanine ligase [Escherichia coli DEC12D]
gi|419338099|ref|ZP_13879591.1| D-alanine--D-alanine ligase [Escherichia coli DEC12E]
gi|419343753|ref|ZP_13885140.1| D-alanine--D-alanine ligase [Escherichia coli DEC13A]
gi|419348175|ref|ZP_13889531.1| D-alanine--D-alanine ligase [Escherichia coli DEC13B]
gi|419353075|ref|ZP_13894364.1| D-alanine--D-alanine ligase [Escherichia coli DEC13C]
gi|419358421|ref|ZP_13899654.1| D-alanine--D-alanine ligase [Escherichia coli DEC13D]
gi|419368366|ref|ZP_13909500.1| D-alanine--D-alanine ligase B [Escherichia coli DEC14A]
gi|419399997|ref|ZP_13940751.1| D-alanine--D-alanine ligase [Escherichia coli DEC15B]
gi|419410399|ref|ZP_13951078.1| D-alanine--D-alanine ligase [Escherichia coli DEC15D]
gi|419410714|ref|ZP_13951391.1| D-alanine--D-alanine ligase [Escherichia coli DEC15E]
gi|419806340|ref|ZP_14331450.1| D-alanine/D-alanine ligase [Escherichia coli AI27]
gi|419811537|ref|ZP_14336411.1| D-alanine--D-alanine ligase [Escherichia coli O32:H37 str. P4]
gi|419864729|ref|ZP_14387146.1| D-alanine--D-alanine ligase [Escherichia coli O103:H25 str.
CVM9340]
gi|419868565|ref|ZP_14390835.1| D-alanine--D-alanine ligase [Escherichia coli O103:H2 str. CVM9450]
gi|419889309|ref|ZP_14409728.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9570]
gi|419897638|ref|ZP_14417220.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9574]
gi|419903498|ref|ZP_14422568.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str. CVM9942]
gi|419905181|ref|ZP_14424149.1| hypothetical protein ECO10026_28454 [Escherichia coli O26:H11 str.
CVM10026]
gi|419919017|ref|ZP_14437188.1| D-alanine--D-alanine ligase [Escherichia coli KD2]
gi|419921873|ref|ZP_14439906.1| D-alanine--D-alanine ligase [Escherichia coli 541-15]
gi|419929446|ref|ZP_14447119.1| D-alanine--D-alanine ligase [Escherichia coli 541-1]
gi|419935300|ref|ZP_14452385.1| D-alanine--D-alanine ligase [Escherichia coli 576-1]
gi|419937933|ref|ZP_14454778.1| D-alanine--D-alanine ligase [Escherichia coli 75]
gi|419951412|ref|ZP_14467605.1| D-alanine--D-alanine ligase [Escherichia coli CUMT8]
gi|420087205|ref|ZP_14599176.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9602]
gi|420092516|ref|ZP_14604218.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9634]
gi|420115897|ref|ZP_14625374.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10021]
gi|420334349|ref|ZP_14835972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-315]
gi|420356650|ref|ZP_14857677.1| D-alanine--D-alanine ligase B [Shigella sonnei 3226-85]
gi|420361666|ref|ZP_14862599.1| D-alanine--D-alanine ligase [Shigella sonnei 4822-66]
gi|420383724|ref|ZP_14883117.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa12]
gi|420389420|ref|ZP_14888694.1| D-alanine--D-alanine ligase [Escherichia coli EPEC C342-62]
gi|421775206|ref|ZP_16211816.1| D-alanine/D-alanine ligase [Escherichia coli AD30]
gi|422333256|ref|ZP_16414267.1| D-alanine-D-alanine ligase B [Escherichia coli 4_1_47FAA]
gi|422354277|ref|ZP_16435019.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
gi|422772985|ref|ZP_16826671.1| D-alanine-D-alanine ligase [Escherichia coli E482]
gi|422816110|ref|ZP_16864325.1| D-alanine-D-alanine ligase B [Escherichia coli M919]
gi|422957567|ref|ZP_16969781.1| D-alanine-D-alanine ligase B [Escherichia coli H494]
gi|422971504|ref|ZP_16974779.1| D-alanine-D-alanine ligase B [Escherichia coli TA124]
gi|423700877|ref|ZP_17675336.1| D-alanine-D-alanine ligase B [Escherichia coli H730]
gi|423709816|ref|ZP_17684170.1| D-alanine-D-alanine ligase B [Escherichia coli B799]
gi|424774698|ref|ZP_18201708.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425118159|ref|ZP_18519914.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0569]
gi|425270798|ref|ZP_18662324.1| D-alanine--D-alanine ligase B [Escherichia coli TW15901]
gi|425281423|ref|ZP_18672554.1| D-alanine--D-alanine ligase B [Escherichia coli TW00353]
gi|425286603|ref|ZP_18677557.1| D-alanine--D-alanine ligase B [Escherichia coli 3006]
gi|425420689|ref|ZP_18801933.1| D-alanine--D-alanine ligase B [Escherichia coli 0.1288]
gi|427803166|ref|ZP_18970233.1| D-alanine-D-alanine ligase B [Escherichia coli chi7122]
gi|427807768|ref|ZP_18974833.1| D-alanine-D-alanine ligase B, affects cell division [Escherichia
coli]
gi|432351728|ref|ZP_19595041.1| D-alanine-D-alanine ligase B [Escherichia coli KTE2]
gi|432368086|ref|ZP_19611194.1| D-alanine-D-alanine ligase B [Escherichia coli KTE10]
gi|432379710|ref|ZP_19622685.1| D-alanine-D-alanine ligase B [Escherichia coli KTE12]
gi|432389989|ref|ZP_19632855.1| D-alanine-D-alanine ligase B [Escherichia coli KTE21]
gi|432400174|ref|ZP_19642935.1| D-alanine-D-alanine ligase B [Escherichia coli KTE26]
gi|432415049|ref|ZP_19657685.1| D-alanine-D-alanine ligase B [Escherichia coli KTE44]
gi|432429205|ref|ZP_19671671.1| D-alanine-D-alanine ligase B [Escherichia coli KTE181]
gi|432452848|ref|ZP_19695095.1| D-alanine-D-alanine ligase B [Escherichia coli KTE193]
gi|432463947|ref|ZP_19706067.1| D-alanine-D-alanine ligase B [Escherichia coli KTE204]
gi|432474091|ref|ZP_19716108.1| D-alanine-D-alanine ligase B [Escherichia coli KTE208]
gi|432479419|ref|ZP_19721385.1| D-alanine-D-alanine ligase B [Escherichia coli KTE210]
gi|432492398|ref|ZP_19734243.1| D-alanine-D-alanine ligase B [Escherichia coli KTE213]
gi|432520743|ref|ZP_19757914.1| D-alanine-D-alanine ligase B [Escherichia coli KTE228]
gi|432532305|ref|ZP_19769314.1| D-alanine-D-alanine ligase B [Escherichia coli KTE234]
gi|432540917|ref|ZP_19777797.1| D-alanine-D-alanine ligase B [Escherichia coli KTE235]
gi|432546412|ref|ZP_19783224.1| D-alanine-D-alanine ligase B [Escherichia coli KTE236]
gi|432546817|ref|ZP_19783617.1| D-alanine-D-alanine ligase B [Escherichia coli KTE237]
gi|432562015|ref|ZP_19798648.1| D-alanine-D-alanine ligase B [Escherichia coli KTE51]
gi|432578807|ref|ZP_19815243.1| D-alanine-D-alanine ligase B [Escherichia coli KTE56]
gi|432600605|ref|ZP_19836861.1| D-alanine-D-alanine ligase B [Escherichia coli KTE66]
gi|432625061|ref|ZP_19861060.1| D-alanine-D-alanine ligase B [Escherichia coli KTE76]
gi|432625653|ref|ZP_19861642.1| D-alanine-D-alanine ligase B [Escherichia coli KTE77]
gi|432634540|ref|ZP_19870447.1| D-alanine-D-alanine ligase B [Escherichia coli KTE80]
gi|432635411|ref|ZP_19871301.1| D-alanine-D-alanine ligase B [Escherichia coli KTE81]
gi|432644131|ref|ZP_19879945.1| D-alanine-D-alanine ligase B [Escherichia coli KTE83]
gi|432659361|ref|ZP_19895026.1| D-alanine-D-alanine ligase B [Escherichia coli KTE111]
gi|432664251|ref|ZP_19899853.1| D-alanine-D-alanine ligase B [Escherichia coli KTE116]
gi|432678499|ref|ZP_19913904.1| D-alanine-D-alanine ligase B [Escherichia coli KTE143]
gi|432683974|ref|ZP_19919297.1| D-alanine-D-alanine ligase B [Escherichia coli KTE156]
gi|432689878|ref|ZP_19925132.1| D-alanine-D-alanine ligase B [Escherichia coli KTE161]
gi|432702637|ref|ZP_19937769.1| D-alanine-D-alanine ligase B [Escherichia coli KTE171]
gi|432717106|ref|ZP_19952111.1| D-alanine-D-alanine ligase B [Escherichia coli KTE9]
gi|432735558|ref|ZP_19970350.1| D-alanine-D-alanine ligase B [Escherichia coli KTE42]
gi|432752921|ref|ZP_19987492.1| D-alanine-D-alanine ligase B [Escherichia coli KTE29]
gi|432768901|ref|ZP_20003281.1| D-alanine-D-alanine ligase B [Escherichia coli KTE50]
gi|432773246|ref|ZP_20007548.1| D-alanine-D-alanine ligase B [Escherichia coli KTE54]
gi|432791321|ref|ZP_20025418.1| D-alanine-D-alanine ligase B [Escherichia coli KTE78]
gi|432797291|ref|ZP_20031320.1| D-alanine-D-alanine ligase B [Escherichia coli KTE79]
gi|432808728|ref|ZP_20042638.1| D-alanine-D-alanine ligase B [Escherichia coli KTE91]
gi|432818314|ref|ZP_20052041.1| D-alanine-D-alanine ligase B [Escherichia coli KTE115]
gi|432830070|ref|ZP_20063680.1| D-alanine-D-alanine ligase B [Escherichia coli KTE135]
gi|432833195|ref|ZP_20066744.1| D-alanine-D-alanine ligase B [Escherichia coli KTE136]
gi|432837654|ref|ZP_20071150.1| D-alanine-D-alanine ligase B [Escherichia coli KTE140]
gi|432856904|ref|ZP_20084155.1| D-alanine-D-alanine ligase B [Escherichia coli KTE144]
gi|432872637|ref|ZP_20092453.1| D-alanine-D-alanine ligase B [Escherichia coli KTE147]
gi|432879350|ref|ZP_20096377.1| D-alanine-D-alanine ligase B [Escherichia coli KTE154]
gi|432883745|ref|ZP_20098987.1| D-alanine-D-alanine ligase B [Escherichia coli KTE158]
gi|432909653|ref|ZP_20116926.1| D-alanine-D-alanine ligase B [Escherichia coli KTE190]
gi|432932355|ref|ZP_20132257.1| D-alanine-D-alanine ligase B [Escherichia coli KTE184]
gi|432952751|ref|ZP_20145494.1| D-alanine-D-alanine ligase B [Escherichia coli KTE197]
gi|432958823|ref|ZP_20149681.1| D-alanine-D-alanine ligase B [Escherichia coli KTE202]
gi|432966236|ref|ZP_20155156.1| D-alanine-D-alanine ligase B [Escherichia coli KTE203]
gi|433017068|ref|ZP_20205344.1| D-alanine-D-alanine ligase B [Escherichia coli KTE105]
gi|433031499|ref|ZP_20219325.1| D-alanine-D-alanine ligase B [Escherichia coli KTE112]
gi|433046121|ref|ZP_20233566.1| D-alanine-D-alanine ligase B [Escherichia coli KTE120]
gi|433051309|ref|ZP_20238558.1| D-alanine-D-alanine ligase B [Escherichia coli KTE122]
gi|433061302|ref|ZP_20248276.1| D-alanine-D-alanine ligase B [Escherichia coli KTE125]
gi|433066215|ref|ZP_20253070.1| D-alanine-D-alanine ligase B [Escherichia coli KTE128]
gi|433090442|ref|ZP_20276755.1| D-alanine-D-alanine ligase B [Escherichia coli KTE138]
gi|433128380|ref|ZP_20313869.1| D-alanine-D-alanine ligase B [Escherichia coli KTE163]
gi|433133281|ref|ZP_20318668.1| D-alanine-D-alanine ligase B [Escherichia coli KTE166]
gi|433157032|ref|ZP_20341915.1| D-alanine-D-alanine ligase B [Escherichia coli KTE177]
gi|433176455|ref|ZP_20360935.1| D-alanine-D-alanine ligase B [Escherichia coli KTE82]
gi|433191884|ref|ZP_20375917.1| D-alanine-D-alanine ligase B [Escherichia coli KTE90]
gi|433201535|ref|ZP_20385352.1| D-alanine-D-alanine ligase B [Escherichia coli KTE95]
gi|442594090|ref|ZP_21012013.1| D-alanine--D-alanine ligase [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|443616107|ref|YP_007379963.1| D-alanine--D-alanine ligase [Escherichia coli APEC O78]
gi|450184966|ref|ZP_21888876.1| D-alanine--D-alanine ligase [Escherichia coli SEPT362]
gi|450208954|ref|ZP_21893882.1| D-alanine--D-alanine ligase [Escherichia coli O08]
gi|450238012|ref|ZP_21898788.1| D-alanine--D-alanine ligase [Escherichia coli S17]
gi|118407|sp|P07862.3|DDLB_ECOLI RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|157831485|pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
Phosphonate
gi|157834791|pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
Ligase At 2.3 Angstroms Resolution
gi|40860|emb|CAA38869.1| D-Ala:D-Ala ligase (Ddl) [Escherichia coli]
gi|145724|gb|AAA23672.1| ddl cell wall enzyme [Escherichia coli]
gi|146030|gb|AAA23815.1| D-alanine:D-alanine ligase [Escherichia coli]
gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
MG1655]
gi|21321973|dbj|BAB96660.1| D-Alanine:D-alanine ligase [Escherichia coli str. K12 substr.
W3110]
gi|73854188|gb|AAZ86895.1| D-alanine-D-alanine ligase B [Shigella sonnei Ss046]
gi|157065243|gb|ABV04498.1| D-alanine--D-alanine ligase B [Escherichia coli HS]
gi|169756480|gb|ACA79179.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
gi|169887566|gb|ACB01273.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
DH10B]
gi|188489826|gb|EDU64929.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
gi|192926474|gb|EDV81107.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
gi|194412601|gb|EDX28898.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
gi|209910544|dbj|BAG75618.1| D-alanine-D-alanine ligase B [Escherichia coli SE11]
gi|218430449|emb|CAR11315.1| D-alanine:D-alanine ligase [Escherichia coli UMN026]
gi|238860726|gb|ACR62724.1| D-alanine:D-alanine ligase [Escherichia coli BW2952]
gi|257762601|dbj|BAI34096.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128]
gi|260450701|gb|ACX41123.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
gi|284919872|emb|CBG32927.1| D-alanine--D-alanine ligase B [Escherichia coli 042]
gi|291430079|gb|EFF03093.1| ddl [Escherichia coli FVEC1412]
gi|291430686|gb|EFF03684.1| D-alanine-D-alanine ligase [Escherichia coli B185]
gi|291472434|gb|EFF14916.1| conserved hypothetical protein [Escherichia coli B354]
gi|299878386|gb|EFI86597.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
gi|300317178|gb|EFJ66962.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
gi|300355641|gb|EFJ71511.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
gi|300395671|gb|EFJ79209.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
gi|300402651|gb|EFJ86189.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
gi|300413287|gb|EFJ96597.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
gi|300420581|gb|EFK03892.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
gi|300450722|gb|EFK14342.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
gi|300525503|gb|EFK46572.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
gi|300531337|gb|EFK52399.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
gi|300840934|gb|EFK68694.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
gi|300843874|gb|EFK71634.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
gi|301075374|gb|EFK90180.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
gi|306908436|gb|EFN38934.1| D-alanine/D-alanine ligase [Escherichia coli W]
gi|309700303|emb|CBI99591.1| D-alanine--D-alanine ligase B [Escherichia coli ETEC H10407]
gi|310337684|gb|EFQ02795.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
gi|315059315|gb|ADT73642.1| D-alanine:D-alanine ligase [Escherichia coli W]
gi|315134786|dbj|BAJ41945.1| ddl [Escherichia coli DH1]
gi|315616129|gb|EFU96748.1| D-alanine--D-alanine ligase B [Escherichia coli 3431]
gi|320200389|gb|EFW74975.1| D-alanylalanine synthetase [Escherichia coli EC4100B]
gi|323160110|gb|EFZ46071.1| D-alanine--D-alanine ligase B [Escherichia coli E128010]
gi|323165975|gb|EFZ51755.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G]
gi|323171255|gb|EFZ56903.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68]
gi|323176400|gb|EFZ61992.1| D-alanine--D-alanine ligase B [Escherichia coli OK1180]
gi|323181789|gb|EFZ67202.1| D-alanine--D-alanine ligase B [Escherichia coli OK1357]
gi|323380127|gb|ADX52395.1| D-alanine/D-alanine ligase [Escherichia coli KO11FL]
gi|323939868|gb|EGB36068.1| D-alanine-D-alanine ligase [Escherichia coli E482]
gi|324017747|gb|EGB86966.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
gi|331040291|gb|EGI12498.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli H736]
gi|331061381|gb|EGI33344.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli TA143]
gi|331066540|gb|EGI38417.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli TA271]
gi|331072129|gb|EGI43465.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli H591]
gi|331081698|gb|EGI52859.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli H299]
gi|332341424|gb|AEE54758.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88]
gi|339413079|gb|AEJ54751.1| D-alanine--D-alanine ligase B [Escherichia coli UMNF18]
gi|342364087|gb|EGU28190.1| D-alanine--D-alanine ligase [Escherichia coli XH140A]
gi|342931233|gb|EGU99955.1| D-alanine--D-alanine ligase B [Escherichia coli MS 79-10]
gi|344194395|gb|EGV48469.1| D-alanine--D-alanine ligase [Escherichia coli XH001]
gi|345332389|gb|EGW64847.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_B2F1]
gi|345343091|gb|EGW75483.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_C165-02]
gi|345346066|gb|EGW78402.1| D-alanine--D-alanine ligase B [Escherichia coli 2534-86]
gi|345354953|gb|EGW87168.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_94C]
gi|345363146|gb|EGW95289.1| D-alanine--D-alanine ligase B [Escherichia coli 3030-1]
gi|345367076|gb|EGW99163.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_EH250]
gi|345368159|gb|EGX00166.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_MHI813]
gi|345384177|gb|EGX14046.1| D-alanine--D-alanine ligase B [Escherichia coli G58-1]
gi|345387289|gb|EGX17113.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_H.1.8]
gi|345392083|gb|EGX21869.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_S1191]
gi|345395865|gb|EGX25600.1| D-alanine--D-alanine ligase B [Escherichia coli TX1999]
gi|359330957|dbj|BAL37404.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
MDS42]
gi|371597892|gb|EHN86710.1| D-alanine-D-alanine ligase B [Escherichia coli H494]
gi|371598580|gb|EHN87377.1| D-alanine-D-alanine ligase B [Escherichia coli TA124]
gi|373245771|gb|EHP65236.1| D-alanine-D-alanine ligase B [Escherichia coli 4_1_47FAA]
gi|375322183|gb|EHS67956.1| D-alanine--D-alanine ligase [Escherichia coli O157:H43 str. T22]
gi|378000975|gb|EHV64037.1| D-alanine--D-alanine ligase B [Escherichia coli DEC6A]
gi|378002472|gb|EHV65523.1| D-alanine--D-alanine ligase [Escherichia coli DEC6B]
gi|378004341|gb|EHV67364.1| D-alanine--D-alanine ligase B [Escherichia coli DEC6C]
gi|378016016|gb|EHV78906.1| D-alanine--D-alanine ligase B [Escherichia coli DEC6D]
gi|378017499|gb|EHV80371.1| D-alanine--D-alanine ligase [Escherichia coli DEC6E]
gi|378019340|gb|EHV82171.1| D-alanine--D-alanine ligase B [Escherichia coli DEC7A]
gi|378028656|gb|EHV91273.1| D-alanine--D-alanine ligase [Escherichia coli DEC7C]
gi|378034193|gb|EHV96759.1| D-alanine--D-alanine ligase [Escherichia coli DEC7D]
gi|378038926|gb|EHW01431.1| D-alanine--D-alanine ligase [Escherichia coli DEC7B]
gi|378043280|gb|EHW05716.1| D-alanine--D-alanine ligase B [Escherichia coli DEC7E]
gi|378054559|gb|EHW16837.1| D-alanine--D-alanine ligase B [Escherichia coli DEC8A]
gi|378058167|gb|EHW20387.1| D-alanine--D-alanine ligase [Escherichia coli DEC8B]
gi|378070077|gb|EHW32160.1| D-alanine--D-alanine ligase [Escherichia coli DEC8D]
gi|378073807|gb|EHW35852.1| D-alanine--D-alanine ligase [Escherichia coli DEC8E]
gi|378083450|gb|EHW45383.1| D-alanine--D-alanine ligase [Escherichia coli DEC9A]
gi|378084039|gb|EHW45968.1| D-alanine--D-alanine ligase [Escherichia coli DEC9B]
gi|378091730|gb|EHW53558.1| D-alanine--D-alanine ligase [Escherichia coli DEC9C]
gi|378096041|gb|EHW57820.1| D-alanine--D-alanine ligase [Escherichia coli DEC9D]
gi|378104377|gb|EHW66036.1| D-alanine--D-alanine ligase [Escherichia coli DEC9E]
gi|378110500|gb|EHW72095.1| D-alanine--D-alanine ligase [Escherichia coli DEC10D]
gi|378118689|gb|EHW80191.1| D-alanine--D-alanine ligase [Escherichia coli DEC10B]
gi|378123531|gb|EHW84949.1| D-alanine--D-alanine ligase [Escherichia coli DEC11A]
gi|378137309|gb|EHW98592.1| D-alanine--D-alanine ligase [Escherichia coli DEC11B]
gi|378141319|gb|EHX02536.1| D-alanine--D-alanine ligase [Escherichia coli DEC10F]
gi|378154248|gb|EHX15324.1| D-alanine--D-alanine ligase B [Escherichia coli DEC11D]
gi|378158403|gb|EHX19428.1| D-alanine--D-alanine ligase B [Escherichia coli DEC11C]
gi|378162272|gb|EHX23237.1| D-alanine--D-alanine ligase B [Escherichia coli DEC11E]
gi|378176429|gb|EHX37235.1| D-alanine--D-alanine ligase B [Escherichia coli DEC12A]
gi|378176797|gb|EHX37602.1| D-alanine--D-alanine ligase [Escherichia coli DEC12B]
gi|378191788|gb|EHX52363.1| D-alanine--D-alanine ligase [Escherichia coli DEC13A]
gi|378192516|gb|EHX53074.1| D-alanine--D-alanine ligase [Escherichia coli DEC12D]
gi|378194371|gb|EHX54886.1| D-alanine--D-alanine ligase [Escherichia coli DEC12E]
gi|378205954|gb|EHX66361.1| D-alanine--D-alanine ligase [Escherichia coli DEC13B]
gi|378209028|gb|EHX69404.1| D-alanine--D-alanine ligase [Escherichia coli DEC13D]
gi|378209710|gb|EHX70078.1| D-alanine--D-alanine ligase [Escherichia coli DEC13C]
gi|378223308|gb|EHX83532.1| D-alanine--D-alanine ligase B [Escherichia coli DEC14A]
gi|378239147|gb|EHX99141.1| D-alanine--D-alanine ligase [Escherichia coli DEC15B]
gi|378249864|gb|EHY09773.1| D-alanine--D-alanine ligase [Escherichia coli DEC15D]
gi|378261724|gb|EHY21515.1| D-alanine--D-alanine ligase [Escherichia coli DEC15E]
gi|383101466|gb|AFG38975.1| D-alanine--D-alanine ligase B [Escherichia coli P12b]
gi|383390120|gb|AFH15078.1| D-alanine--D-alanine ligase [Escherichia coli KO11FL]
gi|383403515|gb|AFH09758.1| D-alanine--D-alanine ligase [Escherichia coli W]
gi|384377761|gb|EIE35654.1| D-alanine/D-alanine ligase [Escherichia coli J53]
gi|384470670|gb|EIE54771.1| D-alanine/D-alanine ligase [Escherichia coli AI27]
gi|385155581|gb|EIF17583.1| D-alanine--D-alanine ligase [Escherichia coli O32:H37 str. P4]
gi|385540509|gb|EIF87330.1| D-alanine-D-alanine ligase B [Escherichia coli M919]
gi|385705264|gb|EIG42330.1| D-alanine-D-alanine ligase B [Escherichia coli B799]
gi|385713577|gb|EIG50508.1| D-alanine-D-alanine ligase B [Escherichia coli H730]
gi|386123728|gb|EIG72317.1| D-alanine-D-alanine ligase B [Escherichia sp. 4_1_40B]
gi|386150223|gb|EIH01512.1| D-alanine--D-alanine ligase [Escherichia coli 5.0588]
gi|386155019|gb|EIH11377.1| D-alanine--D-alanine ligase [Escherichia coli 97.0259]
gi|386166581|gb|EIH33101.1| D-alanine--D-alanine ligase [Escherichia coli 96.0497]
gi|386177357|gb|EIH54836.1| D-alanine--D-alanine ligase [Escherichia coli 3.2608]
gi|386184852|gb|EIH67588.1| D-alanine--D-alanine ligase [Escherichia coli 93.0624]
gi|386191645|gb|EIH80386.1| D-alanine--D-alanine ligase [Escherichia coli 4.0522]
gi|386193774|gb|EIH88058.1| D-alanine--D-alanine ligase [Escherichia coli JB1-95]
gi|386200054|gb|EIH99045.1| D-alanine--D-alanine ligase [Escherichia coli 96.154]
gi|386206540|gb|EII11046.1| D-alanine--D-alanine ligase [Escherichia coli 5.0959]
gi|386209727|gb|EII20214.1| D-alanine--D-alanine ligase [Escherichia coli 9.0111]
gi|386216540|gb|EII33029.1| D-alanine--D-alanine ligase [Escherichia coli 4.0967]
gi|386222828|gb|EII45242.1| D-alanine--D-alanine ligase [Escherichia coli 2.3916]
gi|386227524|gb|EII54880.1| D-alanine--D-alanine ligase [Escherichia coli 3.3884]
gi|386239353|gb|EII76283.1| D-alanine--D-alanine ligase [Escherichia coli 3.2303]
gi|386252315|gb|EIJ02007.1| D-alanine--D-alanine ligase [Escherichia coli B41]
gi|388339069|gb|EIL05456.1| D-alanine--D-alanine ligase [Escherichia coli O103:H25 str.
CVM9340]
gi|388344652|gb|EIL10483.1| D-alanine--D-alanine ligase [Escherichia coli O103:H2 str. CVM9450]
gi|388355053|gb|EIL19918.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9574]
gi|388358125|gb|EIL22613.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9570]
gi|388371033|gb|EIL34525.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str. CVM9942]
gi|388381358|gb|EIL43925.1| hypothetical protein ECO10026_28454 [Escherichia coli O26:H11 str.
CVM10026]
gi|388388915|gb|EIL50462.1| D-alanine--D-alanine ligase [Escherichia coli KD2]
gi|388397002|gb|EIL58044.1| D-alanine--D-alanine ligase [Escherichia coli 541-15]
gi|388403240|gb|EIL63775.1| D-alanine--D-alanine ligase [Escherichia coli 541-1]
gi|388405038|gb|EIL65477.1| D-alanine--D-alanine ligase [Escherichia coli 576-1]
gi|388411226|gb|EIL71410.1| D-alanine--D-alanine ligase [Escherichia coli 75]
gi|388414697|gb|EIL74646.1| D-alanine--D-alanine ligase [Escherichia coli CUMT8]
gi|391268526|gb|EIQ27451.1| D-alanine--D-alanine ligase B [Shigella flexneri K-315]
gi|391290758|gb|EIQ49217.1| D-alanine--D-alanine ligase B [Shigella sonnei 3226-85]
gi|391297552|gb|EIQ55603.1| D-alanine--D-alanine ligase [Shigella sonnei 4822-66]
gi|391310653|gb|EIQ68305.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa12]
gi|391315653|gb|EIQ73177.1| D-alanine--D-alanine ligase [Escherichia coli EPEC C342-62]
gi|394393455|gb|EJE70140.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9602]
gi|394400534|gb|EJE76448.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str. CVM9634]
gi|394405080|gb|EJE80348.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10021]
gi|397903735|gb|EJL20030.1| D-alanine--D-alanine ligase [Shigella sonnei str. Moseley]
gi|408200935|gb|EKI26110.1| D-alanine--D-alanine ligase B [Escherichia coli TW15901]
gi|408206859|gb|EKI31625.1| D-alanine--D-alanine ligase B [Escherichia coli TW00353]
gi|408219714|gb|EKI43832.1| D-alanine--D-alanine ligase B [Escherichia coli 3006]
gi|408348489|gb|EKJ62585.1| D-alanine--D-alanine ligase B [Escherichia coli 0.1288]
gi|408459638|gb|EKJ83419.1| D-alanine/D-alanine ligase [Escherichia coli AD30]
gi|408574803|gb|EKK50562.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0569]
gi|412961348|emb|CCK45253.1| D-alanine-D-alanine ligase B [Escherichia coli chi7122]
gi|412967947|emb|CCJ42560.1| D-alanine-D-alanine ligase B, affects cell division [Escherichia
coli]
gi|421933554|gb|EKT91341.1| D-alanine--D-alanine ligase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|430881307|gb|ELC04561.1| D-alanine-D-alanine ligase B [Escherichia coli KTE2]
gi|430889747|gb|ELC12407.1| D-alanine-D-alanine ligase B [Escherichia coli KTE10]
gi|430894319|gb|ELC16608.1| D-alanine-D-alanine ligase B [Escherichia coli KTE12]
gi|430923602|gb|ELC44337.1| D-alanine-D-alanine ligase B [Escherichia coli KTE21]
gi|430930289|gb|ELC50790.1| D-alanine-D-alanine ligase B [Escherichia coli KTE26]
gi|430944610|gb|ELC64701.1| D-alanine-D-alanine ligase B [Escherichia coli KTE44]
gi|430948387|gb|ELC67975.1| D-alanine-D-alanine ligase B [Escherichia coli KTE181]
gi|430975442|gb|ELC92337.1| D-alanine-D-alanine ligase B [Escherichia coli KTE193]
gi|430983250|gb|ELC99913.1| D-alanine-D-alanine ligase B [Escherichia coli KTE204]
gi|431011557|gb|ELD25632.1| D-alanine-D-alanine ligase B [Escherichia coli KTE210]
gi|431011782|gb|ELD25856.1| D-alanine-D-alanine ligase B [Escherichia coli KTE208]
gi|431014150|gb|ELD27859.1| D-alanine-D-alanine ligase B [Escherichia coli KTE213]
gi|431046126|gb|ELD56245.1| D-alanine-D-alanine ligase B [Escherichia coli KTE228]
gi|431064941|gb|ELD73795.1| D-alanine-D-alanine ligase B [Escherichia coli KTE234]
gi|431065072|gb|ELD73849.1| D-alanine-D-alanine ligase B [Escherichia coli KTE235]
gi|431068194|gb|ELD76699.1| D-alanine-D-alanine ligase B [Escherichia coli KTE236]
gi|431086629|gb|ELD92651.1| D-alanine-D-alanine ligase B [Escherichia coli KTE237]
gi|431100978|gb|ELE05947.1| D-alanine-D-alanine ligase B [Escherichia coli KTE51]
gi|431109763|gb|ELE13713.1| D-alanine-D-alanine ligase B [Escherichia coli KTE56]
gi|431144644|gb|ELE46338.1| D-alanine-D-alanine ligase B [Escherichia coli KTE66]
gi|431153127|gb|ELE54046.1| D-alanine-D-alanine ligase B [Escherichia coli KTE76]
gi|431165392|gb|ELE65745.1| D-alanine-D-alanine ligase B [Escherichia coli KTE80]
gi|431166005|gb|ELE66332.1| D-alanine-D-alanine ligase B [Escherichia coli KTE77]
gi|431174677|gb|ELE74713.1| D-alanine-D-alanine ligase B [Escherichia coli KTE81]
gi|431176012|gb|ELE75998.1| D-alanine-D-alanine ligase B [Escherichia coli KTE83]
gi|431204183|gb|ELF02756.1| D-alanine-D-alanine ligase B [Escherichia coli KTE111]
gi|431205290|gb|ELF03783.1| D-alanine-D-alanine ligase B [Escherichia coli KTE116]
gi|431225455|gb|ELF22655.1| D-alanine-D-alanine ligase B [Escherichia coli KTE143]
gi|431225892|gb|ELF23078.1| D-alanine-D-alanine ligase B [Escherichia coli KTE156]
gi|431232551|gb|ELF28217.1| D-alanine-D-alanine ligase B [Escherichia coli KTE161]
gi|431248038|gb|ELF42247.1| D-alanine-D-alanine ligase B [Escherichia coli KTE171]
gi|431267969|gb|ELF59484.1| D-alanine-D-alanine ligase B [Escherichia coli KTE9]
gi|431287829|gb|ELF78615.1| D-alanine-D-alanine ligase B [Escherichia coli KTE42]
gi|431291579|gb|ELF82082.1| D-alanine-D-alanine ligase B [Escherichia coli KTE29]
gi|431320294|gb|ELG07937.1| D-alanine-D-alanine ligase B [Escherichia coli KTE50]
gi|431321756|gb|ELG09356.1| D-alanine-D-alanine ligase B [Escherichia coli KTE54]
gi|431342989|gb|ELG29959.1| D-alanine-D-alanine ligase B [Escherichia coli KTE78]
gi|431346505|gb|ELG33410.1| D-alanine-D-alanine ligase B [Escherichia coli KTE79]
gi|431351951|gb|ELG38737.1| D-alanine-D-alanine ligase B [Escherichia coli KTE91]
gi|431359303|gb|ELG45948.1| D-alanine-D-alanine ligase B [Escherichia coli KTE115]
gi|431380735|gb|ELG65374.1| D-alanine-D-alanine ligase B [Escherichia coli KTE135]
gi|431389294|gb|ELG73007.1| D-alanine-D-alanine ligase B [Escherichia coli KTE136]
gi|431392485|gb|ELG76058.1| D-alanine-D-alanine ligase B [Escherichia coli KTE140]
gi|431395412|gb|ELG78924.1| D-alanine-D-alanine ligase B [Escherichia coli KTE144]
gi|431405982|gb|ELG89214.1| D-alanine-D-alanine ligase B [Escherichia coli KTE147]
gi|431415148|gb|ELG97698.1| D-alanine-D-alanine ligase B [Escherichia coli KTE154]
gi|431420903|gb|ELH03124.1| D-alanine-D-alanine ligase B [Escherichia coli KTE158]
gi|431448703|gb|ELH29416.1| D-alanine-D-alanine ligase B [Escherichia coli KTE190]
gi|431457365|gb|ELH37704.1| D-alanine-D-alanine ligase B [Escherichia coli KTE184]
gi|431472476|gb|ELH52364.1| D-alanine-D-alanine ligase B [Escherichia coli KTE197]
gi|431475597|gb|ELH55401.1| D-alanine-D-alanine ligase B [Escherichia coli KTE203]
gi|431483318|gb|ELH63010.1| D-alanine-D-alanine ligase B [Escherichia coli KTE202]
gi|431538000|gb|ELI14105.1| D-alanine-D-alanine ligase B [Escherichia coli KTE105]
gi|431561683|gb|ELI35048.1| D-alanine-D-alanine ligase B [Escherichia coli KTE112]
gi|431574421|gb|ELI47202.1| D-alanine-D-alanine ligase B [Escherichia coli KTE120]
gi|431576402|gb|ELI49089.1| D-alanine-D-alanine ligase B [Escherichia coli KTE122]
gi|431589581|gb|ELI60795.1| D-alanine-D-alanine ligase B [Escherichia coli KTE125]
gi|431593077|gb|ELI63641.1| D-alanine-D-alanine ligase B [Escherichia coli KTE128]
gi|431616215|gb|ELI85282.1| D-alanine-D-alanine ligase B [Escherichia coli KTE138]
gi|431652692|gb|ELJ19840.1| D-alanine-D-alanine ligase B [Escherichia coli KTE163]
gi|431664386|gb|ELJ31126.1| D-alanine-D-alanine ligase B [Escherichia coli KTE166]
gi|431683201|gb|ELJ48839.1| D-alanine-D-alanine ligase B [Escherichia coli KTE177]
gi|431711632|gb|ELJ75945.1| D-alanine-D-alanine ligase B [Escherichia coli KTE82]
gi|431723706|gb|ELJ87651.1| D-alanine-D-alanine ligase B [Escherichia coli KTE90]
gi|431727261|gb|ELJ91021.1| D-alanine-D-alanine ligase B [Escherichia coli KTE95]
gi|441605915|emb|CCP97293.1| D-alanine--D-alanine ligase [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|443420615|gb|AGC85519.1| D-alanine--D-alanine ligase [Escherichia coli APEC O78]
gi|449323908|gb|EMD13854.1| D-alanine--D-alanine ligase [Escherichia coli O08]
gi|449325696|gb|EMD15599.1| D-alanine--D-alanine ligase [Escherichia coli SEPT362]
gi|449325872|gb|EMD15769.1| D-alanine--D-alanine ligase [Escherichia coli S17]
Length = 306
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|258546155|ref|ZP_05706389.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
gi|258518580|gb|EEV87439.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
Length = 306
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 123/297 (41%), Gaps = 69/297 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L + A FI +HG GEDG +Q++L+ +G+PYTG GV+A MDKV T
Sbjct: 54 LKGQGFARAFIVLHGRGGEDGQVQAILDWQGIPYTGSGVLACALAMDKVLTKRVWQTFG- 112
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L + D L + EL + L +KPA +G S GV+R+ +L
Sbjct: 113 ---LPVKPD-------LVIDAATTYAELVAALGGSHFAIKPALEGSSVGVSRVGNQAELE 162
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
++ +A G+ E ++ EP+V T +
Sbjct: 163 A---------------AYQKAGGIREK-------IMAEPWV-----------TGR----- 184
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL--SLEEKFQGGTGINLTPPPAS 655
E+T VIG ++P + V S + L + K+ PPP
Sbjct: 185 ---------ELTYPVIGG-----RVLPGIEVTASAEHLFYDYDAKYLAEDTRYRCPPPID 230
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
L + +R +A+ +G++R+D ++ DN I+E+N VPGMT +++
Sbjct: 231 AALDGQLRELTRR---AFDAIGAKGWARVDFILDGDN-RPWILEINMVPGMTSHSLV 283
>gi|356668615|gb|AET35510.1| D-alanine--D-alanine ligase [uncultured bacterium]
Length = 354
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 134/322 (41%), Gaps = 71/322 (22%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++ DLGV
Sbjct: 96 VVFPVLHGLYGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKIVVD---DLGVRQAA 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ DL + + + +K VKP+ G S GVAR E+L
Sbjct: 153 YVPVMRSDL--NDMASVVGRVEAKFSYPVF-VKPSNAGSSKGVARADGREEL-------- 201
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E LR E N +IL+ E M +G
Sbjct: 202 EAALR-------------EAANHDRKILVEE----------------------MIRGR-- 224
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE------KFQGGTGINLTPPPASIMS 658
EI V G L+P V G+IL+ E K+ + P +
Sbjct: 225 --EIECAVFGG-----GLIP-VEASGVGEILAAAEFYDFDAKYYNSDSRTVVNPD---LP 273
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+A+++ ++ + I A+ G +R+D FV D+G V+ E+NT+PG T + ++ L
Sbjct: 274 GDAVNQVREAAKAIFQAVDGYGLARVDFFVK-DDGTVVFNEINTLPGFT--AISMYPMLW 330
Query: 719 EQPPMYPHQFFRKVLDLGSERF 740
E + Q ++++ +RF
Sbjct: 331 EAAGVTKDQLVDRLMEHAFDRF 352
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 38/210 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP+ AGSS GV A D ++ + + E D +++VE + G E V
Sbjct: 179 VFVKPSNAGSSKGVARA----DGREELEAALREAANHDRKILVEEMIRG-REIECAVFGG 233
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G L+P E G ++ +++ KY + P P +N
Sbjct: 234 G---------LIPVEA----SGVGEILAAAEFYDFDAKYYNSDSRTV-VNPDLPGDAVNQ 279
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+RE A +FQ + AR+D +F+ GT++F +IN + G
Sbjct: 280 VREAAKAIFQAVDGYGLARVD-FFVKDD----------------GTVVFNEINTLPGFTA 322
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACSRF 247
S G + ++ ++ HA RF
Sbjct: 323 ISMYPMLWEAAGVTKDQLVDRLMEHAFDRF 352
>gi|432614890|ref|ZP_19851027.1| D-alanine-D-alanine ligase B [Escherichia coli KTE75]
gi|431158599|gb|ELE59197.1| D-alanine-D-alanine ligase B [Escherichia coli KTE75]
Length = 306
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|94986220|ref|YP_605584.1| D-alanyl-alanine synthetase A [Deinococcus geothermalis DSM 11300]
gi|166198483|sp|Q1IWG9.1|DDL_DEIGD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|94556501|gb|ABF46415.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300]
Length = 339
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 127/329 (38%), Gaps = 74/329 (22%)
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
+ E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T LA +
Sbjct: 76 SAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK---QVLASV 132
Query: 479 GVLTI--NKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARL 530
G+ + VRR+ W E +++ + L VKPA G S G++++
Sbjct: 133 GMPQVAWRLAVRRE-----------WQERPQEVRARAGELGYPLFVKPANLGSSVGISKV 181
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
P RA + F ++ + +
Sbjct: 182 SG-------------------PGELERALDLA--------------FSLGRRVILEAMTA 208
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
+K E+ VG++G + S P ++ D E K+ G
Sbjct: 209 HKPR------------ELEVGILGNDAPIAS--PVGELRFEADFYDYETKYTEGRATMHI 254
Query: 651 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
P P + E ++ + L G +R+D F GE+ + EVNT+PG T T
Sbjct: 255 PAP---LPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLNEVNTMPGFT--T 309
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSER 739
++ L E + + ++++L ER
Sbjct: 310 TSMYPKLFEAAGLSYSELVTRLVELALER 338
>gi|414574272|ref|ZP_11431487.1| D-alanine--D-alanine ligase B [Shigella sonnei 3233-85]
gi|425113407|ref|ZP_18515263.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0566]
gi|391290157|gb|EIQ48632.1| D-alanine--D-alanine ligase B [Shigella sonnei 3233-85]
gi|408574125|gb|EKK49920.1| D-alanine--D-alanine ligase B [Escherichia coli 8.0566]
Length = 281
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 33 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 91
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 92 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 140
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 141 A-LRL-------------------------AFQHDEEVLI-----------------EKW 157
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 158 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 208
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 209 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 265
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 266 GMSFSQLVVRILEL 279
>gi|261823014|ref|YP_003261120.1| D-alanine--D-alanine ligase [Pectobacterium wasabiae WPP163]
gi|261607027|gb|ACX89513.1| D-alanine/D-alanine ligase [Pectobacterium wasabiae WPP163]
gi|385873461|gb|AFI91981.1| D-alanine--D-alanine ligase [Pectobacterium sp. SCC3193]
Length = 306
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 134/326 (41%), Gaps = 77/326 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T +
Sbjct: 49 KLKEDGFTRVFIALHGRGGEDGTLQGVLEFLELPYTGSGVMASALTMDKLRTKQVWQAVG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ D R + ++ + L L VKP+R+G S G++++ +L
Sbjct: 109 LPVSPYVALDRRHYSETAANELLAKFTHL-----GLPLIVKPSREGSSVGMSKVNALSEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
ALEE F D++L
Sbjct: 164 PA---ALEEA------------------------------FRHDDDVLV----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G ++PS+ ++ +G E K+ L+
Sbjct: 180 ------EKWLSGPEYTVAILGD-----EVLPSIRIQPAGTFYDYEAKY-------LSDDT 221
Query: 654 ASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
+ D +Q + ++A A+ G+ R+D ++ D G ++EVNT PGMT
Sbjct: 222 QYFCPSGLPDDQEQALAVLAMAAYRAVDCSGWGRVDFMLDSD-GAFYLLEVNTSPGMTSH 280
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q + Q K+L+L
Sbjct: 281 SLVPMAA--RQRGLTFSQLVVKILEL 304
>gi|444353127|ref|YP_007389271.1| D-alanine--D-alanine ligase B (EC 6.3.2.4) [Enterobacter aerogenes
EA1509E]
gi|443903957|emb|CCG31731.1| D-alanine--D-alanine ligase B (EC 6.3.2.4) [Enterobacter aerogenes
EA1509E]
Length = 306
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 134/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + V E + L + +KP+R+G S G++++ E
Sbjct: 117 LTRAQFNAGLSAGVS---EQIAALGLPVI-IKPSREGSSVGMSKVS------------ES 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
C ++ ++ + A F DE+L +W
Sbjct: 161 CAMQ---DALALA------------------FQHDDEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P A
Sbjct: 183 LSGPEFTVAIVGE-----EILPSIRIQTAGTFYDYEAKYLSDETQYFCPG----FEEPAR 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A N L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 ESEIQSLVLKAWNVLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++LDL
Sbjct: 291 GMSFSQLVVRILDL 304
>gi|421844722|ref|ZP_16277879.1| D-alanine--D-alanine ligase [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|411774201|gb|EKS57711.1| D-alanine--D-alanine ligase [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|455643695|gb|EMF22819.1| D-alanine--D-alanine ligase [Citrobacter freundii GTC 09479]
Length = 306
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R + + + +E +K+ L VKP+R+G S G+++ +
Sbjct: 117 LTRSEFE------KGLSNESVTKISALGLPLIVKPSREGSSVGMSK-------------V 157
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
EE N+ A + F +E+L
Sbjct: 158 EE------ENALQGALAL--------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 181 KWLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---AGLEAE 232
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ ++ + AL +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEARLQELVLKAWTALGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
+ Q ++L+L
Sbjct: 290 AGLSFSQLVVRILEL 304
>gi|238797705|ref|ZP_04641200.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
gi|238718457|gb|EEQ10278.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
Length = 289
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 122/299 (40%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T L
Sbjct: 32 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKWVWQALG 91
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T D +KL L VKP+ +G S G++++ A +L
Sbjct: 92 ----LPISPYVALNRQQFETLSPDELAARVAKLGLP-LIVKPSHEGSSVGMSKVDHANEL 146
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ + E F ++L
Sbjct: 147 ---------------------------------QGALVEAFRHDTDVLI----------- 162
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TVG++G ++PS+ ++ G E K+ P
Sbjct: 163 ------EKWLSGPEFTVGILGD-----DVLPSIRIQVPGVFYDYEAKYLSDETQYFCP-- 209
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +STE + AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 210 -SGLSTELEQQLAALALQAYQALGCSGWGRVDVMQDSD-GNFYLLEVNTSPGMTSHSLV 266
>gi|421494663|ref|ZP_15942007.1| DDL [Morganella morganii subsp. morganii KT]
gi|455740207|ref|YP_007506473.1| D-alanine--D-alanine ligase [Morganella morganii subsp. morganii
KT]
gi|400191086|gb|EJO24238.1| DDL [Morganella morganii subsp. morganii KT]
gi|455421770|gb|AGG32100.1| D-alanine--D-alanine ligase [Morganella morganii subsp. morganii
KT]
Length = 305
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 137/326 (42%), Gaps = 78/326 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT----SLAL 472
+L ++ VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK+ T + A
Sbjct: 49 RLKEDGFTKVFIALHGRGGEDGTLQGCLEQMGLPYTGSGVMASALSMDKLRTKQLWAGAG 108
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+A ++ + + ++ L+ + + + + VKP+ +G S G++++
Sbjct: 109 LPIAPYFAISAARFAQISDEELQQGVAPLGY---------PVIVKPSLEGSSVGMSKVDN 159
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
A+ L ALEE F ++L
Sbjct: 160 AQALR---PALEEA------------------------------FKHDKDVLV------- 179
Query: 593 NADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
+W+ E TVG +G+ ++PS+ ++ + E K+
Sbjct: 180 ----------EKWLSGPEFTVGFLGE-----QMLPSIRIQPAAVFYDYEAKYISDDTQYF 224
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P TE + K + A+ EG+ R+D ++ D G+ ++EVNT PGMT
Sbjct: 225 CPGLEGARETEIRELAKAAYK----AVGCEGWGRVDVMLDSD-GQFYLLEVNTSPGMTNH 279
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDL 735
+ L+ QA + Q M F VL L
Sbjct: 280 S-LVPQA-ARQAGMSFSAFVADVLAL 303
>gi|386056805|ref|YP_005973327.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa M18]
gi|420137373|ref|ZP_14645357.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa CIG1]
gi|421157816|ref|ZP_15617156.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa ATCC 25324]
gi|347303111|gb|AEO73225.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa M18]
gi|403249875|gb|EJY63347.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa CIG1]
gi|404550245|gb|EKA59011.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa ATCC 25324]
Length = 346
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 169/438 (38%), Gaps = 138/438 (31%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG + ER VS+ SG V L++ + ++D +SG+ +
Sbjct: 7 KVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVL-------AVDTASGLLGAEEE---- 55
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
RH +LA+ ++ + PD + ++ + L G
Sbjct: 56 -------------RH----LLASKVKEVPPDSDSLA------IIRSGKQSLLSAGELAGV 92
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ F+A+HGG GEDGTLQ+LL+A G YTG G +AS
Sbjct: 93 DV-----------------------FFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASA 129
Query: 461 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK VA L L GV T + L P + E + L VKP
Sbjct: 130 MAMDKDVAKRLFLAA----GVETAS--------WLMAPASE---EAVREQLGFPLVVKPN 174
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G + G S H E+ +P +E
Sbjct: 175 SQGSTVG----------------------------LSIVHSQAEL----------QPAIE 196
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLE 638
+ D +M + E+TVGV+ +P + G ++ E
Sbjct: 197 L---------AGRYGDEVMLERFVAGREVTVGVLDD-----QALPVGEILLGGQEVFDYE 242
Query: 639 EKFQGGTGINLTP---PPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGE 694
K+Q G + P PPA ++ EA QR+ L + AL+L G+SR D F + G
Sbjct: 243 HKYQAGAVREVFPADLPPA--IAAEA-----QRLALKVHRALKLSGYSRTD-FRLDEQGR 294
Query: 695 VLIIEVNTVPGMTPSTVL 712
+ +EVNT+PGMT +++L
Sbjct: 295 LWCLEVNTLPGMTATSLL 312
>gi|421151811|ref|ZP_15611412.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa ATCC 14886]
gi|404526588|gb|EKA36793.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa ATCC 14886]
Length = 346
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 112/438 (25%), Positives = 173/438 (39%), Gaps = 138/438 (31%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG + ER VS+ SG V L++ + ++D +SG
Sbjct: 7 KVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVL-------AVDTASG----------- 48
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
L+ +LA+ ++ + PD + + +R+ K S +
Sbjct: 49 ----------LLGAEEERRLLASKVKEVPPDSDSL-AIIRS----------GKQSLLSAG 87
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
++A W+ + F+A+HGG GEDGTLQ+LL+A G YTG G +AS
Sbjct: 88 ELA-----------WVDV-------FFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASA 129
Query: 461 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK VA L L GV T + L P + E + L VKP
Sbjct: 130 MAMDKDVAKRLFLAA----GVETAS--------WLMAPASE---EAVREQLGFPLVVKPN 174
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G + G S H E+ +P +E
Sbjct: 175 SQGSTVG----------------------------LSIVHSQAEL----------QPAIE 196
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLE 638
+ D +M + E+TVGV+ +P + G ++ E
Sbjct: 197 L---------AGRYGDEVMLERFVAGREVTVGVLDD-----QALPVGEILLGGQEVFDYE 242
Query: 639 EKFQGGTGINLTP---PPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGE 694
K+Q G + P PPA ++ EA QR+ L + AL+L G+SR D F + G
Sbjct: 243 HKYQAGAVREVFPADLPPA--IAAEA-----QRLALKVHRALKLSGYSRTD-FRLDEQGR 294
Query: 695 VLIIEVNTVPGMTPSTVL 712
+ +EVNT+PGMT +++L
Sbjct: 295 LWCLEVNTLPGMTATSLL 312
>gi|410667660|ref|YP_006920031.1| D-alanine--D-alanine ligase [Thermacetogenium phaeum DSM 12270]
gi|409105407|gb|AFV11532.1| D-alanine--D-alanine ligase Ddl [Thermacetogenium phaeum DSM 12270]
Length = 322
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 65/295 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGT+Q LLE G PYTG GV+AS CMDKV +A L G+ T
Sbjct: 62 VFIALHGRYGEDGTIQGLLEVLGYPYTGSGVLASALCMDKV---MAKKVLLYEGISTPPF 118
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ + + + L +L L VKP+R G + GV+ AE+L KA+ +
Sbjct: 119 RIITAGECQERQRTETADRLIEELGLP-LVVKPSRQGSTIGVSVARKAEELE---KAITD 174
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
D+ +F+ + +
Sbjct: 175 AF-------------------------------RYDQTVFAEKFID-------------G 190
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
VE+T +IG ++P + + + K+ G ++ PA I A
Sbjct: 191 VEVTASIIGTKNP--RVLPLLEIVPATGFYDYTAKYSPGMSQHII--PARIPQDVA---- 242
Query: 666 KQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+R+E +A AL F+R+D ++ ++ ++EVNT+PGMT +++L A
Sbjct: 243 -ERVEELALRSYRALGCRQFARVDFMIDREDTP-FVLEVNTIPGMTETSLLPDSA 295
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 39/241 (16%)
Query: 4 QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVIDS 62
+G T P ++ E E + + ++L G +VVKP+R GS+IGV+VA +
Sbjct: 111 EGISTPPFRIITAGECQERQRTE--TADRLIEELGLPLVVKPSRQGSTIGVSVARKA-EE 167
Query: 63 LKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD 122
L+KA D V E F++ G E TA ++ +P V LP ++
Sbjct: 168 LEKAITDAFR-YDQTVFAEKFID-GVEVTASIIGTK-----NPRV-LPL---------LE 210
Query: 123 VREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFL 182
+ ++Y KY P + P R P V + E A ++ LG FAR+D
Sbjct: 211 IVPATGFYDYTAKYSPGMS-QHIIPARIPQDVAERVEELALRSYRALGCRQFARVD---- 265
Query: 183 PSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGH 242
+ +T + ++N I GM +TS L A G + + ++ +
Sbjct: 266 ----FMIDREDTPF---------VLEVNTIPGMTETSLLPDSAKAAGITFAELVSLFVEE 312
Query: 243 A 243
A
Sbjct: 313 A 313
>gi|291280917|ref|YP_003497735.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
gi|387505024|ref|YP_006157280.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. RM12579]
gi|416807780|ref|ZP_11888119.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97]
gi|416818928|ref|ZP_11892998.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA
5905]
gi|419112914|ref|ZP_13657950.1| D-alanine--D-alanine ligase [Escherichia coli DEC5A]
gi|419118418|ref|ZP_13663406.1| D-alanine--D-alanine ligase [Escherichia coli DEC5B]
gi|419123977|ref|ZP_13668887.1| D-alanine--D-alanine ligase [Escherichia coli DEC5C]
gi|419129653|ref|ZP_13674512.1| D-alanine--D-alanine ligase [Escherichia coli DEC5D]
gi|419140051|ref|ZP_13684835.1| D-alanine--D-alanine ligase B [Escherichia coli DEC5E]
gi|425246446|ref|ZP_18639685.1| D-alanine--D-alanine ligase 1 [Escherichia coli 5905]
gi|209746530|gb|ACI71572.1| D-alanine-D-alanine ligase B [Escherichia coli]
gi|290760790|gb|ADD54751.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
gi|320658217|gb|EFX25946.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320663526|gb|EFX30810.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA
5905]
gi|374357018|gb|AEZ38725.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. RM12579]
gi|377966767|gb|EHV30177.1| D-alanine--D-alanine ligase [Escherichia coli DEC5A]
gi|377974649|gb|EHV37976.1| D-alanine--D-alanine ligase [Escherichia coli DEC5B]
gi|377978849|gb|EHV42128.1| D-alanine--D-alanine ligase B [Escherichia coli DEC5E]
gi|377983557|gb|EHV46801.1| D-alanine--D-alanine ligase [Escherichia coli DEC5D]
gi|377983696|gb|EHV46938.1| D-alanine--D-alanine ligase [Escherichia coli DEC5C]
gi|408175640|gb|EKI02538.1| D-alanine--D-alanine ligase 1 [Escherichia coli 5905]
Length = 306
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 143/317 (45%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + V ++ L + +I S L + VKP+R+G S G++++ V A
Sbjct: 117 LTR-VEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-------VAENA 162
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L++ LR+ F +E+L
Sbjct: 163 LQDA-LRL-------------------------AFQHDEEVLI----------------- 179
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ ++PS+ ++ SG E K+ PA + ++
Sbjct: 180 EKWLSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEAS 232
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 233 Q--EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA-- 287
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 288 RQAGMSFSQLVVRILEL 304
>gi|419389502|ref|ZP_13930346.1| D-alanine--D-alanine ligase [Escherichia coli DEC15A]
gi|378246350|gb|EHY06277.1| D-alanine--D-alanine ligase [Escherichia coli DEC15A]
Length = 306
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|311280928|ref|YP_003943159.1| D-alanine--D-alanine ligase [Enterobacter cloacae SCF1]
gi|308750123|gb|ADO49875.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
Length = 306
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 127/320 (39%), Gaps = 83/320 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 AFIALHGRGGEDGTLQGLLELTGIPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRK-------EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
R + ED + + + L VKP+R+G S G++++
Sbjct: 117 LTRAQFSQGLSAEDSQRIAALGL-----------PLIVKPSREGSSVGMSKV-------- 157
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
S SRA F DE+L
Sbjct: 158 ---------------SESRALDAALALA----------FQHDDEVLI------------- 179
Query: 599 WKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
+W+ E TV V+G+ ++PS+ ++ +G E K+ P
Sbjct: 180 ----EKWLSGPEFTVAVVGE-----EILPSIRIQPAGTFYDYEAKYLSDETKYFCPGCED 230
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
E + K + N L G+ RID + D G++ ++E NT PGMT +++
Sbjct: 231 PQREEEM---KALVLKAWNILGCSGWGRIDVMQDED-GQLYLLEANTSPGMTSHSLVPMA 286
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A Q M Q ++LDL
Sbjct: 287 A--RQAGMSFSQLVVRILDL 304
>gi|386714606|ref|YP_006180929.1| D-alanine--D-alanine ligase [Halobacillus halophilus DSM 2266]
gi|384074162|emb|CCG45655.1| D-alanine--D-alanine ligase [Halobacillus halophilus DSM 2266]
Length = 310
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 62/289 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 483
VF+ +HG GEDG +Q LL+ +PY G GV++S MDK + +LN G+ T
Sbjct: 56 VFLGLHGRFGEDGKIQGLLDMLNLPYVGSGVLSSALAMDKAKSKQIFSLN-----GLQTA 110
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
N LL + DI ++ +KP ++G + G+
Sbjct: 111 NSKTFDVTGLLN--MSDIVEDIKKHFPT-PFVIKPNQEGSTLGL---------------- 151
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ + G IE + Q+ + ++ +
Sbjct: 152 ----------TIVKNEGQIEK---------------------AVQTAAHSDSTILVEDYV 180
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
+ E+TV VIG+ G + +P + + D + K++ G ++ P + + D
Sbjct: 181 QGREVTVPVIGQKGK-ETPLPVIEIIPKNDYYDFDSKYKPGGSEHIVP---AKLPDNLTD 236
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ KQ L E +SR+D +N + GE +I+EVNT+PGMTP+++
Sbjct: 237 RLKQEAVKAHQLLGCEVYSRVDFIIN-EKGEPVILEVNTLPGMTPTSLF 284
>gi|283783879|ref|YP_003363744.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
gi|282947333|emb|CBG86878.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LLE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R + + + EL +++ L VKP+R+G S G++++ + AL
Sbjct: 117 LTRAQFE------KGLSEELVTQISALGLPLIVKPSREGSSVGMSKVAEYD-------AL 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ L F +E+L
Sbjct: 164 QSALAL--------------------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++P++ ++ +G E K+ P + E
Sbjct: 181 KWLSGPEFTVAILGE-----EILPTIRIQPAGTFYDYEAKYLSDETQYFCPAGLET-AQE 234
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
AL + + + L +G+ RIDA ++ D G+ ++E NT PGMT S L+ A E+
Sbjct: 235 AL--LRDLVRKAWSTLGCKGWGRIDAMLDSD-GQFYLLEANTSPGMT-SHSLVPMAAREK 290
Query: 721 PPMYPHQFFRKVLDL 735
+ Q ++L+L
Sbjct: 291 GLSF-SQLVVRILEL 304
>gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
gi|306533158|gb|ADN02692.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
Length = 364
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 134/319 (42%), Gaps = 69/319 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF VHG GEDGTLQ LLE GV Y G GV+ S MDK + A+ A L +L
Sbjct: 95 VFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGSALGMDK-DRAKAVWLQAGLPILPFM- 152
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKA 542
V R+E L W+EL +L+ + + VKPAR G S G++++ L
Sbjct: 153 -VVRRESLPP------WNELAIQLRRRMEFPVFVKPARGGSSVGISKVHDERGLK----- 200
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+ C L +S ++ E +E E
Sbjct: 201 -KACELAFTYDS----------------KIVIEQGIEARE-------------------- 223
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
I GV G + S P + + + E K++ G+ L P + ++ E
Sbjct: 224 -----IECGVWGN-EDVRSFPPGEIIH-THEFYDYEAKYEDTEGLQLKIP--AELTPEQQ 274
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV--LIHQALSEQ 720
+ + E AL+ EGF+R+D ++ + + E+NT+PG TP ++ L+ QA
Sbjct: 275 EYVRSLAEKAYRALECEGFARVDFLLDTETEVFYLNEINTLPGFTPVSMFPLMAQAAGIS 334
Query: 721 PPMYPHQFFRKVLDLGSER 739
P ++++LG +R
Sbjct: 335 FP----DLLTRLIELGLDR 349
>gi|420555807|ref|ZP_15052813.1| D-alanine--D-alanine ligase B, partial [Yersinia pestis PY-03]
gi|420609801|ref|ZP_15101370.1| D-alanine--D-alanine ligase B, partial [Yersinia pestis PY-13]
gi|391435752|gb|EIQ96780.1| D-alanine--D-alanine ligase B, partial [Yersinia pestis PY-03]
gi|391496425|gb|EIR51377.1| D-alanine--D-alanine ligase B, partial [Yersinia pestis PY-13]
Length = 304
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>gi|300938487|ref|ZP_07153227.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
gi|300456556|gb|EFK20049.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|404373406|ref|ZP_10978669.1| D-alanine-D-alanine ligase B [Escherichia sp. 1_1_43]
gi|226840613|gb|EEH72615.1| D-alanine-D-alanine ligase B [Escherichia sp. 1_1_43]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|212711834|ref|ZP_03319962.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
30120]
gi|212685356|gb|EEB44884.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
30120]
Length = 367
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 70/320 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGV 480
+F VHG +GEDG+LQ LL +P+ GPGV+ S CMDK T L H+A
Sbjct: 101 VIFPIVHGNLGEDGSLQGLLRMANLPFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPF-- 158
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+TI K R +I + T + L +KPA G S G++++
Sbjct: 159 ITILKSGRD----------EISYSATVEKLGLPLFIKPANQGSSVGISKV---------- 198
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
N+ S + ++ F+ ++L S +
Sbjct: 199 ------------NNESEFNAALDF-----------AFLFDVKVLIESAVKGR-------- 227
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G + S + + +S + K+ G ++ P + + +
Sbjct: 228 ------EIECAVLGNEHPLASPCGEIVLHDS--FYAYHTKYIDENGASVVAP--ADLEHD 277
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
DK + AL G SR+D F+ +N +V+I E+NT+PG T + ++ L +Q
Sbjct: 278 ISDKIRAIALEAYQALNCSGMSRVDVFL-TENNDVVINEINTLPGFT--NISMYPKLWQQ 334
Query: 721 PPMYPHQFFRKVLDLGSERF 740
M + ++++LG E+F
Sbjct: 335 GGMTYQELISRLIELGIEKF 354
>gi|331002650|ref|ZP_08326165.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330407063|gb|EGG86567.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 349
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 82/326 (25%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-------- 476
VF +HG GEDGT+Q LLE G+PY G GV+AS MDK+ T L ++ L
Sbjct: 94 VVFPVLHGLFGEDGTIQGLLELSGIPYVGCGVLASAVGMDKLYTKLVVDKLGIRQADYEP 153
Query: 477 --DLGVL-TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
D V + V+R ED P+ VKP+ G S GV++
Sbjct: 154 VIDYEVREDFKRVVKRIEDRFDYPVF----------------VKPSNAGSSKGVSKASNR 197
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
E+L G++E N ++L+ E V
Sbjct: 198 EELE---------------------KGILEALNHDRKVLVEETIV--------------- 221
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
G+ E+ GV+G+ G + + +K + + K++ + + L
Sbjct: 222 -------GH----EVECGVLGRPGEVMASGVG-EIKSAATFYDYDAKYKLDS-LTLLDSQ 268
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 713
E L +C ++ I AL G SR+D F D GE++ E+NT+PG T + +
Sbjct: 269 LPNGVREKLPECAKK---IFTALDGFGLSRVDFFAKED-GEIVFNEINTMPGFT--AISM 322
Query: 714 HQALSEQPPMYPHQFFRKVLDLGSER 739
+ L E + + ++++L ER
Sbjct: 323 YPMLFEAAGIGKKELVDRLIELAFER 348
>gi|329901114|ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
gi|327549213|gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
Length = 322
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 124/311 (39%), Gaps = 64/311 (20%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + +LA E VFIA+HG GEDGTLQ LE G+PYTG GVMAS +
Sbjct: 42 DAHPFDPAERSLAELATEQFDRVFIALHGRFGEDGTLQGALELLGIPYTGSGVMASAIGI 101
Query: 464 DKVATS-LALNH-LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 521
DKV T + L+H L L ++ +TP D+ E+ +L L +K +
Sbjct: 102 DKVMTKRIWLSHDLPTPRFLVLDA---------QTP-ADVLDEVPEELGLP-LMLKAPHE 150
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G + G+A++ D+ F + D
Sbjct: 151 GSTIGIAKVIVDADMHTG----------------------------------FALCAQYD 176
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
++ + + + EIT+ V+G G +P V ++ E K+
Sbjct: 177 SVVLAEEFISGR-------------EITIPVLGS-GHGARALPIVEIRAPEGNYDYEHKY 222
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 701
+ L P P + T L R NA+ G+ R+D + + ++EVN
Sbjct: 223 FSDDTVYLCPAPLADEVTATLQDIAVR---AFNAVGCTGWGRVDIMLRAGDDAPFLLEVN 279
Query: 702 TVPGMTPSTVL 712
T PGMT +++
Sbjct: 280 TSPGMTSHSLV 290
>gi|82542696|ref|YP_406643.1| D-alanine--D-alanine ligase [Shigella boydii Sb227]
gi|187730657|ref|YP_001878902.1| D-alanine--D-alanine ligase [Shigella boydii CDC 3083-94]
gi|416277185|ref|ZP_11644286.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
gi|416303685|ref|ZP_11653662.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
gi|417680282|ref|ZP_12329672.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74]
gi|420323744|ref|ZP_14825535.1| D-alanine--D-alanine ligase B [Shigella flexneri CCH060]
gi|420350960|ref|ZP_14852163.1| D-alanine--D-alanine ligase B [Shigella boydii 4444-74]
gi|420378314|ref|ZP_14877819.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 225-75]
gi|421680814|ref|ZP_16120657.1| D-alanine--D-alanine ligase [Shigella flexneri 1485-80]
gi|81244107|gb|ABB64815.1| D-alanine-D-alanine ligase B [Shigella boydii Sb227]
gi|187427649|gb|ACD06923.1| D-alanine--D-alanine ligase B [Shigella boydii CDC 3083-94]
gi|320172817|gb|EFW48049.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
gi|320183621|gb|EFW58464.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
gi|332098881|gb|EGJ03832.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74]
gi|391258021|gb|EIQ17128.1| D-alanine--D-alanine ligase B [Shigella flexneri CCH060]
gi|391289794|gb|EIQ48278.1| D-alanine--D-alanine ligase B [Shigella boydii 4444-74]
gi|391307903|gb|EIQ65630.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 225-75]
gi|404342316|gb|EJZ68705.1| D-alanine--D-alanine ligase [Shigella flexneri 1485-80]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLDASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|218295191|ref|ZP_03496027.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
gi|218244394|gb|EED10919.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
Length = 321
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 124/317 (39%), Gaps = 74/317 (23%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
+ VF +HG +GEDGT+Q LE G PY G GV S CMDK
Sbjct: 74 DRYGVVFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDK--------------- 118
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVY 539
+K V + + P V ++ T + + VKPA G S G++R+ DL
Sbjct: 119 -DFSKRVLAQAGIPVVPWVALYRGETPLVPFEPPFFVKPANTGSSIGISRVERYADLE-- 175
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
+ALEE + ++
Sbjct: 176 -EALEEAF-------------------------------------------RHDRKAVVE 191
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
K S E+ VGV+G S P V+ E K+ G L P P +
Sbjct: 192 KALSGVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTE 249
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
E + Q + L A L L G +R+D F+ GE+ + EVNT+PG TP+++ L+
Sbjct: 250 ETV----QEMALKAYKVLGLRGMARVDFFLA--EGELYLNEVNTIPGFTPTSMFPRLFLA 303
Query: 719 EQPPMYPHQFFRKVLDL 735
+ YP + R++++L
Sbjct: 304 KG-LTYP-ELLRRLVEL 318
>gi|440229456|ref|YP_007343249.1| D-alanine--D-alanine ligase [Serratia marcescens FGI94]
gi|440051161|gb|AGB81064.1| D-alanine--D-alanine ligase [Serratia marcescens FGI94]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 131/330 (39%), Gaps = 85/330 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + + VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK T L L
Sbjct: 49 QLKAQGFSKVFIALHGRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKLVWQSLG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAE 534
L I V H+ + ++ L VKP+R+G S G++++
Sbjct: 109 ----LPIAPYVALHRAQFNGAGK---HQALADIEALGLPLIVKPSREGSSVGMSKV---- 157
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
A G +E + E F D++L
Sbjct: 158 ----------------------EAFGALEAA-------LDEAFRHDDDVLV--------- 179
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+W+ E TV IG S+MPS+ ++ +G + K+ P
Sbjct: 180 --------EKWLSGPEYTVAFIGD-----SVMPSIRIQPAGVFYDYQAKYIADDTQYFCP 226
Query: 652 PPASIMSTEALDKCKQRIELIA------NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
S +Q EL A AL G+ R+D + ++G ++EVNT PG
Sbjct: 227 SGLS---------AEQEAELAALAVRAYRALDCSGWGRVDVMQD-NDGSFYLLEVNTSPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
MT +++ A Q + Q ++L+L
Sbjct: 277 MTSHSLVPMAA--RQYGLSFSQLVARILEL 304
>gi|386347555|ref|YP_006045804.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6578]
gi|339412522|gb|AEJ62087.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6578]
Length = 364
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 134/319 (42%), Gaps = 69/319 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF VHG GEDGTLQ LLE GV Y G GV+ S MDK + A+ A L +L
Sbjct: 95 VFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGSALGMDK-DRAKAVWLQAGLPILPFM- 152
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKA 542
V R+E L W+EL +L+ + + VKPAR G S G++++ L
Sbjct: 153 -VVRRESLPP------WNELAIQLRRRMEFPVFVKPARGGSSVGISKVHDERGLK----- 200
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+ C L +S ++ E +E E
Sbjct: 201 -KACELAFTYDS----------------KIVIEQGIEARE-------------------- 223
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
I GV G + S P + + + E K++ G+ L P + ++ E
Sbjct: 224 -----IECGVWGN-EDVRSFPPGEIIH-THEFYDYEAKYEDTEGLQLKIP--AELTPEQQ 274
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV--LIHQALSEQ 720
+ + E AL+ EGF+R+D ++ + + E+NT+PG TP ++ L+ QA
Sbjct: 275 EYVRNVAEKAYRALECEGFARVDFLLDTETEVFYLNEINTLPGFTPVSMFPLMAQAAGIS 334
Query: 721 PPMYPHQFFRKVLDLGSER 739
P ++++LG +R
Sbjct: 335 FP----DLLTRLIELGLDR 349
>gi|315917832|ref|ZP_07914072.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
25563]
gi|313691707|gb|EFS28542.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
25563]
Length = 288
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 124/294 (42%), Gaps = 83/294 (28%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
EN ++A+HGG GE+G +QS+LE G YTG GV AS MDK+ T +A L
Sbjct: 52 ENYDLAYLALHGGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLT----KKIASLEG 107
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ + K ++ P++ VKP++DG S G+ E++
Sbjct: 108 VRMAKTYSNVAEISSYPVM----------------VKPSKDGSSVGIHVCNNQEEVE--- 148
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KAL+E + MI E +++ +
Sbjct: 149 KALQEI----------SGYAMI------------EEYIQGE------------------- 167
Query: 601 GNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP-ASIMS 658
E+TVGV+ GK + ++P ++ DI E K+ G I+ P A I
Sbjct: 168 ------ELTVGVLNGKALGVLKIIP-----QAADIYDYESKYAAGGSIHEFPARIAKIAY 216
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
EA+ + I AL ++G SR D + D +V +EVN PGMT ++++
Sbjct: 217 EEAMVNAVK----IHEALGMKGVSRSDFILKDD--QVYFLEVNACPGMTKTSLV 264
>gi|22127498|ref|NP_670921.1| D-alanine--D-alanine ligase [Yersinia pestis KIM10+]
gi|45443359|ref|NP_994898.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Microtus str.
91001]
gi|51595040|ref|YP_069231.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 32953]
gi|108809535|ref|YP_653451.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
gi|108810588|ref|YP_646355.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
gi|145600340|ref|YP_001164416.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
gi|150260408|ref|ZP_01917136.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
gi|153949608|ref|YP_001402342.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
gi|162421556|ref|YP_001607293.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
gi|165928190|ref|ZP_02224022.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165937767|ref|ZP_02226328.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
IP275]
gi|166008968|ref|ZP_02229866.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212032|ref|ZP_02238067.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401219|ref|ZP_02306719.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421968|ref|ZP_02313721.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167426436|ref|ZP_02318189.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167469526|ref|ZP_02334230.1| D-alanine--D-alanine ligase [Yersinia pestis FV-1]
gi|170025731|ref|YP_001722236.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
gi|186894046|ref|YP_001871158.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
gi|218927753|ref|YP_002345628.1| D-alanine--D-alanine ligase [Yersinia pestis CO92]
gi|229837052|ref|ZP_04457217.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
gi|229840445|ref|ZP_04460604.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229843013|ref|ZP_04463163.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
str. India 195]
gi|229900780|ref|ZP_04515904.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
gi|270487850|ref|ZP_06204924.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
D27]
gi|294502645|ref|YP_003566707.1| D-alanyl-alanine synthetase A [Yersinia pestis Z176003]
gi|384121079|ref|YP_005503699.1| D-alanyl-alanine synthetase A [Yersinia pestis D106004]
gi|384124958|ref|YP_005507572.1| D-alanyl-alanine synthetase A [Yersinia pestis D182038]
gi|384137456|ref|YP_005520158.1| D-alanine--D-alanine ligase [Yersinia pestis A1122]
gi|384416419|ref|YP_005625781.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420545034|ref|ZP_15043207.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-01]
gi|420550357|ref|ZP_15047963.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-02]
gi|420561486|ref|ZP_15057763.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-04]
gi|420566491|ref|ZP_15062278.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-05]
gi|420572154|ref|ZP_15067422.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-06]
gi|420577422|ref|ZP_15072178.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-07]
gi|420582836|ref|ZP_15077118.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-08]
gi|420587943|ref|ZP_15081723.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-09]
gi|420593262|ref|ZP_15086514.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-10]
gi|420598941|ref|ZP_15091599.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-11]
gi|420604515|ref|ZP_15096571.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-12]
gi|420615063|ref|ZP_15106050.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-14]
gi|420620527|ref|ZP_15110822.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-15]
gi|420625554|ref|ZP_15115380.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-16]
gi|420630710|ref|ZP_15120061.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-19]
gi|420635896|ref|ZP_15124694.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-25]
gi|420641473|ref|ZP_15129724.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-29]
gi|420646565|ref|ZP_15134394.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-32]
gi|420652248|ref|ZP_15139491.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-34]
gi|420657702|ref|ZP_15144410.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-36]
gi|420663043|ref|ZP_15149177.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-42]
gi|420668055|ref|ZP_15153710.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-45]
gi|420673326|ref|ZP_15158506.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-46]
gi|420678829|ref|ZP_15163513.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-47]
gi|420684064|ref|ZP_15168217.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-48]
gi|420689229|ref|ZP_15172801.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-52]
gi|420695048|ref|ZP_15177887.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-53]
gi|420700337|ref|ZP_15182494.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-54]
gi|420706488|ref|ZP_15187394.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-55]
gi|420711762|ref|ZP_15192172.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-56]
gi|420717130|ref|ZP_15196921.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-58]
gi|420722773|ref|ZP_15201734.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-59]
gi|420728393|ref|ZP_15206732.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-60]
gi|420733524|ref|ZP_15211355.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-61]
gi|420738966|ref|ZP_15216269.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-63]
gi|420744196|ref|ZP_15220931.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-64]
gi|420750116|ref|ZP_15225930.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-65]
gi|420755199|ref|ZP_15230444.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-66]
gi|420761247|ref|ZP_15235278.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-71]
gi|420766425|ref|ZP_15239965.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-72]
gi|420771467|ref|ZP_15244477.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-76]
gi|420776788|ref|ZP_15249274.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-88]
gi|420782286|ref|ZP_15254094.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-89]
gi|420787716|ref|ZP_15258859.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-90]
gi|420793181|ref|ZP_15263785.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-91]
gi|420798333|ref|ZP_15268411.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-92]
gi|420803716|ref|ZP_15273257.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-93]
gi|420808897|ref|ZP_15277948.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-94]
gi|420814668|ref|ZP_15283114.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-95]
gi|420819833|ref|ZP_15287799.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-96]
gi|420824912|ref|ZP_15292340.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-98]
gi|420830695|ref|ZP_15297559.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-99]
gi|420835509|ref|ZP_15301899.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-100]
gi|420840671|ref|ZP_15306580.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-101]
gi|420846262|ref|ZP_15311639.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-102]
gi|420851603|ref|ZP_15316393.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-103]
gi|420857181|ref|ZP_15321097.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-113]
gi|421761984|ref|ZP_16198784.1| D-alanine--D-alanine ligase [Yersinia pestis INS]
gi|22095560|sp|Q8ZIE7.1|DDL_YERPE RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|81640386|sp|Q66EK3.1|DDL_YERPS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|123073601|sp|Q1CMM5.1|DDL_YERPN RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|123372037|sp|Q1C216.1|DDL_YERPA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|166198514|sp|A4TQ81.1|DDL_YERPP RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|167012333|sp|A7FM64.1|DDL_YERP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|226696394|sp|A9R122.1|DDL_YERPG RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|229486025|sp|B2K4E8.1|DDL_YERPB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|229486026|sp|B1JK79.1|DDL_YERPY RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|21960595|gb|AAM87172.1|AE013964_8 D-alanine-D-alanine ligase B [Yersinia pestis KIM10+]
gi|45438228|gb|AAS63775.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Microtus str.
91001]
gi|51588322|emb|CAH19930.1| D-alanine-D-alanine ligase B, affects cell division [Yersinia
pseudotuberculosis IP 32953]
gi|108774236|gb|ABG16755.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
gi|108781448|gb|ABG15506.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
gi|115346364|emb|CAL19236.1| D-alanine--D-alanine ligase B [Yersinia pestis CO92]
gi|145212036|gb|ABP41443.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
gi|149289816|gb|EDM39893.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
gi|152961103|gb|ABS48564.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
gi|162354371|gb|ABX88319.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
gi|165914179|gb|EDR32795.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
IP275]
gi|165919801|gb|EDR37102.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165992307|gb|EDR44608.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206778|gb|EDR51258.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960105|gb|EDR56126.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167049244|gb|EDR60652.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054534|gb|EDR64342.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|169752265|gb|ACA69783.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
gi|186697072|gb|ACC87701.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
gi|229682119|gb|EEO78211.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
gi|229689889|gb|EEO81948.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696811|gb|EEO86858.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705995|gb|EEO92004.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
gi|262360675|gb|ACY57396.1| D-alanylalanine synthetase [Yersinia pestis D106004]
gi|262364622|gb|ACY61179.1| D-alanylalanine synthetase [Yersinia pestis D182038]
gi|270336354|gb|EFA47131.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
D27]
gi|294353104|gb|ADE63445.1| D-alanylalanine synthetase [Yersinia pestis Z176003]
gi|320016923|gb|ADW00495.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852585|gb|AEL71138.1| D-alanine--D-alanine ligase [Yersinia pestis A1122]
gi|391432080|gb|EIQ93558.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-01]
gi|391433107|gb|EIQ94479.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-02]
gi|391448052|gb|EIR07902.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-04]
gi|391448883|gb|EIR08656.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-05]
gi|391451505|gb|EIR10994.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-06]
gi|391464177|gb|EIR22493.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-07]
gi|391465757|gb|EIR23917.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-08]
gi|391467845|gb|EIR25785.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-09]
gi|391481259|gb|EIR37816.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-10]
gi|391482056|gb|EIR38537.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-12]
gi|391482163|gb|EIR38627.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-11]
gi|391496948|gb|EIR51852.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-15]
gi|391500576|gb|EIR55067.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-14]
gi|391512089|gb|EIR65436.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-16]
gi|391513797|gb|EIR66977.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-19]
gi|391515763|gb|EIR68721.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-25]
gi|391527555|gb|EIR79461.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-29]
gi|391530357|gb|EIR81941.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-34]
gi|391531780|gb|EIR83243.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-32]
gi|391544670|gb|EIR94858.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-36]
gi|391546277|gb|EIR96286.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-42]
gi|391547040|gb|EIR96975.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-45]
gi|391560876|gb|EIS09466.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-46]
gi|391562014|gb|EIS10476.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-47]
gi|391564055|gb|EIS12302.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-48]
gi|391576181|gb|EIS22777.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-52]
gi|391576862|gb|EIS23357.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-53]
gi|391588418|gb|EIS33453.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-55]
gi|391590974|gb|EIS35614.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-54]
gi|391592191|gb|EIS36658.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-56]
gi|391605375|gb|EIS48269.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-60]
gi|391606801|gb|EIS49489.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-58]
gi|391607649|gb|EIS50228.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-59]
gi|391619668|gb|EIS60911.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-61]
gi|391620568|gb|EIS61706.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-63]
gi|391628778|gb|EIS68794.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-64]
gi|391631201|gb|EIS70862.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-65]
gi|391642547|gb|EIS80808.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-71]
gi|391645298|gb|EIS83191.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-72]
gi|391647534|gb|EIS85155.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-66]
gi|391654990|gb|EIS91776.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-76]
gi|391661783|gb|EIS97794.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-88]
gi|391666672|gb|EIT02102.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-89]
gi|391668460|gb|EIT03692.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-90]
gi|391672667|gb|EIT07457.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-91]
gi|391686081|gb|EIT19546.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-93]
gi|391687611|gb|EIT20903.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-92]
gi|391688840|gb|EIT22027.1| D-alanine--D-alanine ligase family protein [Yersinia pestis PY-94]
gi|391700200|gb|EIT32315.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-95]
gi|391703555|gb|EIT35296.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-96]
gi|391704319|gb|EIT35987.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-98]
gi|391714509|gb|EIT45154.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-99]
gi|391719927|gb|EIT49992.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-100]
gi|391720439|gb|EIT50461.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-101]
gi|391731120|gb|EIT59862.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-102]
gi|391733544|gb|EIT61910.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-103]
gi|391737133|gb|EIT65049.1| D-alanine--D-alanine ligase B [Yersinia pestis PY-113]
gi|411178306|gb|EKS48318.1| D-alanine--D-alanine ligase [Yersinia pestis INS]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>gi|331661138|ref|ZP_08362070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli TA206]
gi|331052180|gb|EGI24219.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli TA206]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 141/315 (44%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
R + E L + E++S Q + VKP+R+G S G++++ V AL+
Sbjct: 117 LTRAEFEKGLNDKQL---AEISS--QGLPVIVKPSREGSSVGMSKV-------VAENALQ 164
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+ LR+ F +E+L +
Sbjct: 165 DA-LRL-------------------------AFQHDEEVLI-----------------EK 181
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 182 WLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ- 233
Query: 662 LDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 -EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
>gi|322513885|ref|ZP_08066964.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
gi|322120284|gb|EFX92231.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
Length = 303
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 132/321 (41%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T V R+ + + + ++ +KL VKP+ +G S GV + E L
Sbjct: 110 -VGLPTAEMVVVRRGEAVDS------EQIIAKLGLPVF-VKPSSEGSSVGVTKAKTVEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L F I++ E F+ T K
Sbjct: 162 ---LPAIEEAL------KFD-------------SIVLVEAFL-----------TGKEYSV 188
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
+ G ++P+V V G+ K+ + P
Sbjct: 189 PVLDGQ-------------------VLPAVQVIPDGEFYDYHAKYVSDNTQYVVPA---- 225
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
++ E + + +++ + + G+SRID + NG ++EVNT PGMT ++ A
Sbjct: 226 LTDERQAEVAKLVKVAYDVVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ P + +VL+L +
Sbjct: 285 ATVGIPF--EKLVERVLELSA 303
>gi|157155564|ref|YP_001461262.1| D-alanine--D-alanine ligase [Escherichia coli E24377A]
gi|157077594|gb|ABV17302.1| D-alanine--D-alanine ligase B [Escherichia coli E24377A]
Length = 306
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 136/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L ++
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAG----LPVSP 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 114 WVALTRAEFEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|383315703|ref|YP_005376545.1| D-alanine--D-alanine ligase [Frateuria aurantia DSM 6220]
gi|379042807|gb|AFC84863.1| D-alanine--D-alanine ligase [Frateuria aurantia DSM 6220]
Length = 319
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 130/319 (40%), Gaps = 89/319 (27%)
Query: 411 SINEWIKLAKENQATVFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
++N ++ A ++ VF +HG G GEDG +Q LLEA GVPYTG GV+ S MDK+ +
Sbjct: 59 ALNRALREASVDR--VFNVLHGQHGGGEDGVVQGLLEAAGVPYTGSGVLGSALSMDKIRS 116
Query: 469 S---LALN-----HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
LAL H+A + DVRR L+ P++ VKPA
Sbjct: 117 KLVWLALGLPTPRHVA----IRKGDDVRRAASLIGFPLI----------------VKPAC 156
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
+G S G+ R+ N + A + + P L+ E +
Sbjct: 157 EGSSVGITRV-------------------FDENGLAEA---VALAERYPGDLLMETLI-- 192
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
+G E TVG++ + +PS+ + +G+ K
Sbjct: 193 -------------------RGGG---EYTVGILAE-----RALPSIRIVPAGEYYDYHAK 225
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+Q L P +S E +Q AL G+ R+D + + G ++EV
Sbjct: 226 YQAEDTRYLCPG----LSGEDEQSLRQLALQAFQALDCRGWGRVDVMRD-EAGRFWLLEV 280
Query: 701 NTVPGMTPSTVLIHQALSE 719
NT PGMT S L+ +A +E
Sbjct: 281 NTAPGMT-SHSLVPKAAAE 298
>gi|302865483|ref|YP_003834120.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
gi|302568342|gb|ADL44544.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
Length = 377
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 120/316 (37%), Gaps = 78/316 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE+ GVPY G G++AS MDKVA AL
Sbjct: 111 VFPVLHGPYGEDGVVQGLLESLGVPYVGCGILASAVGMDKVAMKRAL------------- 157
Query: 486 DVRRKEDLLKTPIV----DIWHELTSKLQC-----KTLCVKPARDGCSTGVARLCCAEDL 536
R ED+ TP V W + + L VKPAR G S G++R+ +DL
Sbjct: 158 ---RAEDVPTTPYVWFDEPTWRAASDPEKLVVGLRGPLFVKPARMGSSIGISRVADGDDL 214
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
V A+EE D ++ Q
Sbjct: 215 ---VAAVEEAF-------------------------------RHDHVVLVEQGVTGR--- 237
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+ GV+G S + V V +G +K+ G + P P
Sbjct: 238 ----------ELECGVLGGWQPEASAVGEVRV--AGGWFDYRQKYFGDADPMIVPAP--- 282
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E ++ ++ A+ G +R+D + ++ + E+NT+PG T + + +
Sbjct: 283 LPDEVTERIRELSVRAFTAIGGWGLARVDFLYDETTSDLFVNELNTLPGFTAHS-MYPKV 341
Query: 717 LSEQPPMYPHQFFRKV 732
+E YP R V
Sbjct: 342 WAESGVAYPEVVDRLV 357
>gi|392307117|ref|ZP_10269651.1| D-alanine-D-alanine ligase B [Pseudoalteromonas citrea NCIMB 1889]
Length = 302
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 121/307 (39%), Gaps = 72/307 (23%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P +I E KL + VFIA+HG GEDGT+Q LE +PYTG V+ S MDKV
Sbjct: 44 PAERNILELSKLEVDR---VFIALHGRGGEDGTIQGALEFMSLPYTGSQVLGSALAMDKV 100
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
S L A L KE I+ + + + VKP+ +G S G
Sbjct: 101 -RSKHLFRAAQLSTAAYTV-ANAKEGFDAAAIIADFGK---------VMVKPSHEGSSIG 149
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
+A+ AE+LT + A F DE+L
Sbjct: 150 MAQASTAEELTEALTA---------------------------------AFAFDDEVLIE 176
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG 646
T + E TV ++G + +P + +K E K+Q +
Sbjct: 177 QWVTGR--------------EFTVAMLG-----NDALPVIEMKTPRGFYDYEAKYQVNST 217
Query: 647 INLTPPPASIMSTEALD-KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P S T L K EL+ G+ R+DA + ++G+ ++EVNTVPG
Sbjct: 218 EYYCPADISEAHTAQLQIMAKHAFELVGAT----GWGRVDAMQD-EHGQFYLLEVNTVPG 272
Query: 706 MTPSTVL 712
MT +++
Sbjct: 273 MTEKSLV 279
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 39/203 (19%)
Query: 38 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 97
GKV+VKP+ GSSIG+ A + L +A DD V++E ++ G EFT +L
Sbjct: 135 GKVMVKPSHEGSSIGMAQA-STAEELTEALTAAF-AFDDEVLIEQWVT-GREFTVAML-- 189
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G D PV ++++ ++Y KY Y+ P
Sbjct: 190 --GNDALPV--------------IEMKTPRGFYDYEAKY-QVNSTEYYCPADISEAHTAQ 232
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
++ A F+ +G + R+D E G ++N + GM +
Sbjct: 233 LQIMAKHAFELVGATGWGRVDAM-----------------QDEHGQFYLLEVNTVPGMTE 275
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A G S ++ I+
Sbjct: 276 KSLVPMAAKAQGISFEQLVVRIL 298
>gi|256424912|ref|YP_003125565.1| D-alanyl-alanine synthetase A [Chitinophaga pinensis DSM 2588]
gi|256039820|gb|ACU63364.1| D-alanine/D-alanine ligase [Chitinophaga pinensis DSM 2588]
Length = 329
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 124/290 (42%), Gaps = 60/290 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFI +HG GEDG LQ E G+P+T G++ S +K S +A LGV+ ++K
Sbjct: 78 VFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNK---SYCNKVVASLGVVNVSK 134
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V + K DI + +L+ VKPA G S G++++ AE+L A+E+
Sbjct: 135 SVH----IFKDQPFDI-QAILQELKLPVF-VKPAEGGSSIGMSKVNTAEELA---PAIEK 185
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
N +ILI E FV KG
Sbjct: 186 AF------------------NEDVQILI-EEFV---------------------KGR--- 202
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EIT G+ G+ +++P + S + E K+ G +TP A E +++
Sbjct: 203 -EITCGLYRSNGAF-TVLPVTEIISSKEFFDYEAKYTPGVSREVTPAEA---PNEIVNQI 257
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
++ + + N L G R+D + + +EVNT+PG + ++++ Q
Sbjct: 258 QETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTMPGQSENSIVPQQ 307
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 45/212 (21%)
Query: 40 VVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
V VKP GSSIG V A + +++KA D ++++E F++G E T +
Sbjct: 157 VFVKPAEGGSSIGMSKVNTAEELAPAIEKAFNE-----DVQILIEEFVKG-REITCGLYR 210
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVV 154
F PV + + E F+Y KY P +++V TP P +
Sbjct: 211 SNGAFTVLPVTEIISSKEF--------------FDYEAKYTPGVSREV---TPAEAPNEI 253
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+N I+E A L+ +L R+D + +S +F F ++N + G
Sbjct: 254 VNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLF----------------FLEVNTMPG 297
Query: 215 MEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+ S + QQ G + T+I C R
Sbjct: 298 QSENSIVPQQVRAAGKTLQEFYGTLI-EECLR 328
>gi|170718786|ref|YP_001783968.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
gi|190359138|sp|B0US69.1|DDL_HAES2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|168826915|gb|ACA32286.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
Length = 308
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 72/295 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 481
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + +AD+ V+
Sbjct: 63 VFNILHGRGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVV 122
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T +T + ++ + L VKP+ +G S G+ ++ +DL V+
Sbjct: 123 T------------RTSFSQLNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAVE 170
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
F+ + E ++ E ++ D
Sbjct: 171 -------------FALQYD---------ETVLIEEWLSGD-------------------- 188
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV V+G + ++PS+ + G+ E K+ P S ++ E
Sbjct: 189 -----ELTVPVLG-----NEVLPSIKIVPQGEFYDYEAKYIADNTQYFCP---SGLTEER 235
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ +Q ++ + + G+SRID ++ G+ ++EVNT PGMT ++ A
Sbjct: 236 EQELRQLVKQAYDVVGCRGWSRIDVMLD-GEGKFRLVEVNTNPGMTSHSLFPKSA 289
>gi|422349894|ref|ZP_16430782.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404657743|gb|EKB30625.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 310
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 128/327 (39%), Gaps = 70/327 (21%)
Query: 389 EGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEG 448
EG+ K G D+ P S+ L K FIA+HG +GEDGT+Q +L G
Sbjct: 26 EGVHKALVSKGVDVLKFDPKTDSLE---TLEKGGFDRAFIALHGRLGEDGTIQGVLNYLG 82
Query: 449 VPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD--IWHELT 506
+PYTGPGV AS +DK T + + E ++ P D + E
Sbjct: 83 IPYTGPGVTASAMAIDKDLTKRVWR----------SAGIPVPEGVMIDPKADDAVLEEAI 132
Query: 507 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 566
+ L L VKPA DG S GV +L + KALE+ A G
Sbjct: 133 ACLGATGLVVKPAHDGSSIGVTKL-AEPTVAALRKALED------------AAG------ 173
Query: 567 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPS 625
V DE+L + E TV V+ G+ +P
Sbjct: 174 -----------VRGDEVLVEEYIHGR--------------EFTVAVLDGRA------LPV 202
Query: 626 VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRID 685
+ ++ K+ G ++ P + + EA E A+ G+SRID
Sbjct: 203 IEIRAPEGDYDFNNKYF-GDAVHYDCP--AKLEDEAAATLGSLCERAFAAVGARGWSRID 259
Query: 686 AFVNVDNGEVLIIEVNTVPGMTPSTVL 712
A D G ++E+NT PGMTP +++
Sbjct: 260 ALQRAD-GSFALLEINTSPGMTPHSLV 285
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 38/202 (18%)
Query: 40 VVVKPTRAGSSIGVT-VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
+VVKP GSSIGVT +A + +L+KA D V+VE ++ G EFT VLD
Sbjct: 140 LVVKPAHDGSSIGVTKLAEPTVAALRKALEDAAGVRGDEVLVEEYIH-GREFTVAVLDGR 198
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ LP +++R + +++ KY V Y P + ++
Sbjct: 199 A---------LPV---------IEIRAPEGDYDFNNKYF-GDAVHYDCPAKLEDEAAATL 239
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
F +G ++RID G+ +IN GM
Sbjct: 240 GSLCERAFAAVGARGWSRIDAL-----------------QRADGSFALLEINTSPGMTPH 282
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A VG ++++ ++
Sbjct: 283 SLVPMAARAVGMDYADLCLKVL 304
>gi|366053798|ref|ZP_09451520.1| D-alanyl-alanine synthetase A [Lactobacillus suebicus KCTC 3549]
Length = 378
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 130/314 (41%), Gaps = 69/314 (21%)
Query: 402 IADELP---MRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVM 457
++DE P M + + + L + +F V HG +GEDGT+Q L + PY G GV+
Sbjct: 71 VSDEYPKIDMSNPLAPILALEEIRDVDIFYPVIHGNLGEDGTIQGLFKLLNKPYIGSGVL 130
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD---IWHELTSKLQCKTL 514
AS DK T LN +R + ++ TP W+ + S+L ++
Sbjct: 131 ASAASFDKDFTKQILNQAG----------IRNTQYVVVTPENREEYSWNRIESELGA-SV 179
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574
+KPA G S G+ R AED K+ EE L F ++
Sbjct: 180 FLKPANQGSSVGIHR---AEDQ----KSYEEGLADAFKYDFK---------------ILV 217
Query: 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 634
E VE + EI + ++G M S + +V V +S +
Sbjct: 218 EKAVEHPQ------------------------EIEISILGNEKPMASKLGAVRVPDSDEF 253
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNG 693
+ KF +G+ P ++ E L K ++ L A AL ++G SRID V+ NG
Sbjct: 254 YDYQNKFVDASGVVFELP---VVLPEELTKEITKMALDAYRALGMKGLSRIDFLVD-HNG 309
Query: 694 EVLIIEVNTVPGMT 707
+ E NT+PG T
Sbjct: 310 VPYLSEPNTLPGFT 323
>gi|114777859|ref|ZP_01452790.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
gi|114551850|gb|EAU54390.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
Length = 307
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 118/296 (39%), Gaps = 78/296 (26%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
++AK T FIA+HG +GEDG +Q LLE G+PYTG VMAS CM+K L L
Sbjct: 58 QIAKAAIDTAFIALHGTLGEDGCVQGLLEIMGIPYTGSHVMASALCMNK---RLCKQVLG 114
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
G L TP+ DI E+T + VKP +G S G+ R+ ++
Sbjct: 115 QAG--------------LSTPM-DIRIEVTGPERYPVF-VKPVAEGSSVGLHRISSQQEW 158
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+AL N S A M EMP
Sbjct: 159 ----QAL---------NIQSPAAWMAEMP------------------------------- 174
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
VEI V V+ +LMP +SG + K+ G P +
Sbjct: 175 ------VNGVEIAVSVLAGV----ALMPVEVAPKSG-VYDYASKYTVGATEYFCP---AR 220
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ E + C E A G R+D V GE +I+E+NT+PGMT +++L
Sbjct: 221 LPMETVRYCMDCAEKAVAACGCTGAPRVDMIVG-SGGEAVILEINTLPGMTATSLL 275
>gi|365813291|pdb|3V4Z|A Chain A, D-Alanine--D-Alanine Ligase From Yersinia Pestis
gi|365813292|pdb|3V4Z|B Chain B, D-Alanine--D-Alanine Ligase From Yersinia Pestis
Length = 309
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 52 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 111
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 112 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 166
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 167 Q---KALVEAF-------------------------------------------QHDSDV 180
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 181 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 229
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 230 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 286
>gi|432812241|ref|ZP_20046091.1| D-alanine-D-alanine ligase B [Escherichia coli KTE101]
gi|431358344|gb|ELG45002.1| D-alanine-D-alanine ligase B [Escherichia coli KTE101]
Length = 306
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELIGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|189501741|ref|YP_001957458.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497182|gb|ACE05729.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
5a2]
Length = 475
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 33/175 (18%)
Query: 71 LEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIF 130
L+G ++ V+VE F+ G EF+ IVL PV L PTE+ + D F
Sbjct: 302 LQG-EESVLVESFITG-REFSCIVLQEAGN---EPVALPPTEM----------LKGDLHF 346
Query: 131 NYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFS 190
+YR KYLP V TP P+ +N+I+E LF+ L +ARIDG +FS
Sbjct: 347 DYRAKYLPGL-VRKQTPMTLPLAQLNTIKEACVQLFESLNFQVYARIDG--------IFS 397
Query: 191 SSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 245
S + Y D N +GM +SFLF QA+++G + S +L +I ++ +
Sbjct: 398 SDNSIY---------LNDPNTTAGMNPSSFLFHQAAEIGLNPSQLLTFLIRNSLA 443
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 100/472 (21%), Positives = 180/472 (38%), Gaps = 92/472 (19%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLAS-----SIDCSSGMDANITD 336
V + GG + ER++S G V+ NL E P + S +D +I D
Sbjct: 7 VGIFLGGSSREREISFAGGRTVYDNLDK-GLFEPIPIFVDSFNNFIQLDWRYLYQGSIRD 65
Query: 337 PDSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDR-AAFTSHLRNQVVNDLVEGLKKHS 395
P S +L T ++ + + PD+ + + + + +V + ++G+
Sbjct: 66 ---------FYPPSDMLSLTKFQIYMESLGNLSPDQLSQYMARVGKKVTAEQLKGM---- 112
Query: 396 WFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPG 455
D A F+++HG GEDG++Q LLE +PY+G G
Sbjct: 113 ----IDFA-----------------------FLSLHGPCGEDGSIQGLLEWYKIPYSGSG 145
Query: 456 VMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTL 514
++ + +DK+ + G L + + KT D ++ EL L L
Sbjct: 146 ILGTAVGIDKIVQK---KWMQQAGFLVTPYSIIDRNTWQKTTNKDALFEELIHTLGL-PL 201
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLL----------RIPPNSFSRAHGMIEM 564
+K R G S GV + +D + KA+ + P ++ +I++
Sbjct: 202 VIKSPRQGSSIGV-NIVYEKDFEAFTKAIHASFFIEQVTAKQWQELSPQ--AKEQWLIKL 258
Query: 565 PN------PPPEI---LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV--------E 607
+ P EI +I+ P + + S D + +G + E
Sbjct: 259 VDLRSGIGLPVEINGHIIYHPEALLNFVDNYFNSCESPLDLVSLQGEESVLVESFITGRE 318
Query: 608 ITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIMSTEALDK 664
+ V+ + G+ +P + + K+ G TP P A + + + +
Sbjct: 319 FSCIVLQEAGNEPVALPPTEMLKGDLHFDYRAKYLPGLVRKQTPMTLPLAQLNTIK--EA 376
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
C Q E +L + ++RID + DN + + + NT GM PS+ L HQA
Sbjct: 377 CVQLFE----SLNFQVYARIDGIFSSDN-SIYLNDPNTTAGMNPSSFLFHQA 423
>gi|422018141|ref|ZP_16364698.1| D-alanine--D-alanine ligase [Providencia alcalifaciens Dmel2]
gi|414104433|gb|EKT65998.1| D-alanine--D-alanine ligase [Providencia alcalifaciens Dmel2]
Length = 367
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 70/320 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGV 480
+F VHG +GEDG+LQ LL +P+ GPGV+ S CMDK T L H+A
Sbjct: 101 VIFPIVHGNLGEDGSLQGLLRMANLPFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPF-- 158
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+TI K R +I + T + L +KPA G S G++++
Sbjct: 159 ITILKSGRD----------EISYSATVEKLGLPLFIKPANQGSSVGISKV---------- 198
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
N+ S + ++ F+ ++L S +
Sbjct: 199 ------------NNESEFNAALDF-----------AFLFDVKVLIESAVKGR-------- 227
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G + S + + +S + K+ G ++ P + + +
Sbjct: 228 ------EIECAVLGNEHPLASPCGEIVLHDS--FYAYHTKYIDENGASVVAP--ADLEHD 277
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
DK + AL G SR+D F+ +N +V+I E+NT+PG T + ++ L +Q
Sbjct: 278 ISDKIRAIALEAYQALNCSGMSRVDVFL-TENNDVVINEINTLPGFT--NISMYPKLWQQ 334
Query: 721 PPMYPHQFFRKVLDLGSERF 740
M + ++++LG E+F
Sbjct: 335 GGMTYQELISQLIELGIEKF 354
>gi|254292779|ref|YP_003058802.1| D-alanine--D-alanine ligase [Hirschia baltica ATCC 49814]
gi|254041310|gb|ACT58105.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814]
Length = 302
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 135/334 (40%), Gaps = 84/334 (25%)
Query: 390 GLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGV 449
G+ + + GFD+ E+ + ++ +K A N V A+HG GEDG +Q LLE +
Sbjct: 24 GMAQAARNEGFDVV-EIDITRDLSNQLKEA--NPDVVLNALHGPYGEDGCVQGLLEILEI 80
Query: 450 PYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED-----LLKTPIVDIWHE 504
PY+ GV+AS MDK + N A +G+L V KED ++K P V
Sbjct: 81 PYSHSGVLASALAMDKAKSR---NVYARMGLLVAEGGVYAKEDVAAEHVMKPPYV----- 132
Query: 505 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 564
VKP +G S GV L +P E
Sbjct: 133 -----------VKPIAEGSSFGV--------------------LIVP-----------EG 150
Query: 565 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 624
N PP L+ + D +L + E+TV V+G + +
Sbjct: 151 ANRPPAELLDPKWGFGDSVLVEQFIPGR--------------ELTVSVMG-----NEALA 191
Query: 625 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE-ALDKCKQRIELIA-NALQLEGFS 682
+ D K++ G ++ P S T+ ALD LIA +AL G S
Sbjct: 192 VTEITTLRDYYDYSAKYEAGGSKHVIPAEISDAVTQAALDAA-----LIAHDALGCRGVS 246
Query: 683 RIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
R D + D ++I+E NT PGMTP++++ QA
Sbjct: 247 RSDFRYDDDTKRLVILETNTQPGMTPTSLVPEQA 280
>gi|403387551|ref|ZP_10929608.1| D-alanyl-alanine synthetase A [Clostridium sp. JC122]
Length = 343
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 113/289 (39%), Gaps = 69/289 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG---VL 481
VF +HG GEDGT+Q L + VP GPGVM+S CMDK+ T L H V+
Sbjct: 85 VVFPVLHGQFGEDGTIQGLCKLMNVPCVGPGVMSSAVCMDKIYTKYILEHAGIKQAPYVV 144
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+N + + + L I I + LT + VKPA G S G+ + E+L K
Sbjct: 145 VVNSEYNKNKLEL---INKIENHLTY-----PVFVKPANSGSSVGITKAHNNEELE---K 193
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR--LMW 599
+EE L DR L+
Sbjct: 194 GIEEALKH---------------------------------------------DRKVLVE 208
Query: 600 KG-NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
KG N+R E+ V V+G S+ + + + E K+ L P +
Sbjct: 209 KGINAR--EVEVAVLGNDNPSASIPGEII--PAKEFYDYEAKYHNAASKLLIPAAFNDKD 264
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
E + + I AL G +R+D V+ D E+ + EVNT+PG T
Sbjct: 265 IELIRDLAVK---IFKALDCAGMARVDFLVDKDTNEIYLNEVNTIPGFT 310
>gi|432858397|ref|ZP_20084893.1| D-alanine-D-alanine ligase B [Escherichia coli KTE146]
gi|431408640|gb|ELG91823.1| D-alanine-D-alanine ligase B [Escherichia coli KTE146]
Length = 306
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 137/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKF-LWQGAGLPVAAWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|406912874|gb|EKD52396.1| hypothetical protein ACD_62C00036G0009 [uncultured bacterium]
Length = 354
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 127/326 (38%), Gaps = 82/326 (25%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGTLQ LLE VPY GP V S +DK T L+H GV +
Sbjct: 92 AVFPLIHGSFGEDGTLQGLLELVAVPYVGPDVAGSSMAIDKDLTKRILSH---AGVNVVP 148
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ +D+ + + +W + + VKPAR G S G+ ++ E L K
Sbjct: 149 FETFEPQDIKELDVNTLWSRFS-----EGCFVKPARCGSSLGIRQVKTKETL----KPAI 199
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E LR D++L + +
Sbjct: 200 EFALRY-----------------------------DDKVLVEQKIVGR------------ 218
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E+ V+G + S++ + K+ S E K+ G L P + +++ D
Sbjct: 219 --ELECAVLGGTPPLASVIGEIVPKDG--FYSYEAKYIDDDGAQLIAP--AEVTSAVRDA 272
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
++ L LEG +R+D F+ ++G + + EVNT+PG T + MY
Sbjct: 273 LQKTAIKTFQMLCLEGMARVDFFL-ANDGVLYVNEVNTIPGFTKIS------------MY 319
Query: 725 PH----------QFFRKVLDLGSERF 740
P + K++DLG RF
Sbjct: 320 PRLLGLSGVPYTELITKLVDLGIGRF 345
>gi|237729390|ref|ZP_04559871.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
gi|226909119|gb|EEH95037.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
Length = 306
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 136/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
R + E L +V E+++ L VKP+R+G S G++ K E
Sbjct: 117 LTRAEFEKGLSDEVVT---EISA--LGLPLIVKPSREGSSVGMS------------KVEE 159
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E L HG + + F +E+L +
Sbjct: 160 ENAL----------HGALAL-----------AFQHDEEVLI-----------------EK 181
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 182 WLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---AGLEVEQ 233
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ ++ + L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EARLQELVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
+ Q ++L+L
Sbjct: 291 GLSFSQLVVRILEL 304
>gi|293392857|ref|ZP_06637175.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
gi|291424716|gb|EFE97927.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
Length = 306
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 126/321 (39%), Gaps = 88/321 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + + VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK T + +
Sbjct: 49 QLKAQGFSKVFIALHGRGGEDGTLQGMLEFLDLPYTGSGVMASALTMDKWRTKMVWQSMG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARL 530
L I V L + V E S+L L VKP+R+G S G++++
Sbjct: 109 ----LPIAPYVA----LHRAEFVG---EAKSQLLASVEALGLPLIVKPSREGSSVGMSKV 157
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
+L V AL+E F D++L
Sbjct: 158 SEFGEL---VAALDEA------------------------------FRHDDDVLV----- 179
Query: 591 NKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI 647
+W+ E TV +G LMPS+ ++ +G + K+
Sbjct: 180 ------------EKWLSGPEYTVAFLGD-----QLMPSIRIQPAGVFYDYQAKYISDDTQ 222
Query: 648 NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P S +S E + L G+ R+D + ++G ++EVNT PGMT
Sbjct: 223 YFCP---SGLSAEQESELAALAARAYRGLDCSGWGRVDVMQD-NDGSFYLLEVNTSPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQF 728
+++ PM QF
Sbjct: 279 SHSLV---------PMAARQF 290
>gi|52425719|ref|YP_088856.1| D-alanine--D-alanine ligase [Mannheimia succiniciproducens MBEL55E]
gi|81386800|sp|Q65RY9.1|DDL_MANSM RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|52307771|gb|AAU38271.1| DdlA protein [Mannheimia succiniciproducens MBEL55E]
Length = 307
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 72/304 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-- 474
+L ++ F +HG GEDG +Q +LE G+PYTG GVM S MDK+ T +
Sbjct: 53 QLKEQGFERAFNILHGRGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFG 112
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+AD+ ++T R D L P+ E+ +L L VKP+R+G S G+ ++
Sbjct: 113 LPIADMEIVT-----RDTVDEL-NPL-----EVVERLGLP-LMVKPSREGSSVGLTKVNA 160
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
E+L N+ A D +L
Sbjct: 161 VEELK---------------NAVDLA------------------LTHDDTVLIEE----- 182
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
W +E+TV V+ ++P+V + G+ + K+ + P
Sbjct: 183 ------WLSG---IEMTVPVLD-----DQVLPAVQIIPEGEFYDYDAKYISDNTRYICPA 228
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
P MS E+L + ++ ++ + + G+SRID + NG ++EVNT PGMT ++
Sbjct: 229 P---MSEESLQELQKLVKRAYDVVGCRGWSRIDVMTDA-NGNFRLVEVNTTPGMTSHSLF 284
Query: 713 IHQA 716
A
Sbjct: 285 PKSA 288
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T ++ LK A + L DD V++E +L G E T VLD
Sbjct: 142 LMVKPSREGSSVGLT-KVNAVEELKNAVDLALTH-DDTVLIEEWL-SGIEMTVPVLDD-- 196
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
Q +V + + ++Y KY+ + Y P + ++
Sbjct: 197 ----------------QVLPAVQIIPEGEFYDYDAKYI-SDNTRYICPAPMSEESLQELQ 239
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ + +G ++RID V + + G ++N GM S
Sbjct: 240 KLVKRAYDVVGCRGWSRID---------VMTDAN--------GNFRLVEVNTTPGMTSHS 282
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A+ VG+S ++ I+
Sbjct: 283 LFPKSAATVGYSFEQLVVKIL 303
>gi|354596168|ref|ZP_09014185.1| D-alanine--D-alanine ligase [Brenneria sp. EniD312]
gi|353674103|gb|EHD20136.1| D-alanine--D-alanine ligase [Brenneria sp. EniD312]
Length = 306
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 128/321 (39%), Gaps = 67/321 (20%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L E VFIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ T L L
Sbjct: 49 RLKDEGFTKVFIALHGRGGEDGTLQGLLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLCCAE 534
L ++ V D EL KL L VKP+R+G S G++++
Sbjct: 109 ----LPVSPYVAFHRQQFAALAED---ELLEKLAHLGTPLIVKPSREGSSVGMSKVD--- 158
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
RI + E F DE+L
Sbjct: 159 --------------RIAALPAALE----------------EAFRHDDEVLVEK------- 181
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
W + TV ++G ++PS+ ++ +G E K+ P
Sbjct: 182 ----WLSGPEY---TVAILGD-----EVLPSIRIQAAGTFYDYEAKYLSDDTQYFCP--- 226
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
S +S E + AL G+ R+D ++ D G ++EVNT PGMT S L+
Sbjct: 227 SGLSAEKERELAALSLAAYRALDCGGWGRVDLMMDGD-GAFYLLEVNTSPGMT-SHSLVP 284
Query: 715 QALSEQPPMYPHQFFRKVLDL 735
A +Q + Q +VL+L
Sbjct: 285 MAARQQGLSFS-QLVARVLEL 304
>gi|238791174|ref|ZP_04634813.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
gi|238729307|gb|EEQ20822.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
Length = 289
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 125/303 (41%), Gaps = 75/303 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L
Sbjct: 32 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASG 91
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ + +T +KL L VKP+ +G S G++++ A+ L
Sbjct: 92 ----LPISPYIALNRQQFETLSSVELMACVAKLGLP-LIVKPSHEGSSVGMSKVDQADQL 146
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
HG +E E F ++L
Sbjct: 147 ----------------------HGALE-----------EAFRHDSDVLI----------- 162
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G +++PS+ ++ G E K+ P
Sbjct: 163 ------EKWLSGPEYTVAILGD-----NVLPSIRIQAPGVFYDYEAKYLSDETQYFCPSG 211
Query: 654 ASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
S D+ +Q++ ++ AL G+ R+D + D G ++EVNT PGMT
Sbjct: 212 LS-------DELEQQLATLSLQAYQALGCSGWGRVDVMQDSD-GNFYLLEVNTSPGMTSH 263
Query: 710 TVL 712
+++
Sbjct: 264 SLV 266
>gi|336325865|ref|YP_004605831.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100]
gi|336101847|gb|AEI09667.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100]
Length = 379
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 120/314 (38%), Gaps = 90/314 (28%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F +HG GEDGT+Q L E G+PY G GV+AS MDK T LA + +
Sbjct: 125 IFPVLHGQNGEDGTIQGLFELAGIPYVGNGVLASAAGMDKEYT----KRLAKQAGVPCGE 180
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
++ E+ ELT Q + + VKPAR G S G++++ ED
Sbjct: 181 ELILAEN----------RELTEDEQQRLGLPVFVKPARGGSSIGISKVDTWED------- 223
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
F EI F NK M G
Sbjct: 224 ----------------------------------FAHAVEIAFDHD--NKVIVEAMIHG- 246
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN-------LTPPPAS 655
R VE CG + SV + E+ +G G + +TP +
Sbjct: 247 -REVE--------CGVLQYPEGSVIASAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPA 297
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+ EA + ++ AL EG +R+D FV D+GEV++ E+NT+PG TP +
Sbjct: 298 PIGEEATAEVRRLAVRTFEALNCEGLARVDFFVT-DSGEVILNEINTLPGFTPIS----- 351
Query: 716 ALSEQPPMYPHQFF 729
MYP F
Sbjct: 352 -------MYPQMFI 358
>gi|298252869|ref|ZP_06976663.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
gi|297533233|gb|EFH72117.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
Length = 380
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 127/308 (41%), Gaps = 62/308 (20%)
Query: 418 LAKENQAT---------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
LA+EN T VF +HG GEDGTLQ LLE VPY G GV+AS CMDK
Sbjct: 90 LARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYA 149
Query: 469 SLALNHLADLGVL-TINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----LCVKPARDGC 523
L A + V I D R+ K E+ ++++ L VKP+R G
Sbjct: 150 K-QLFKAAGINVAPGIALDARKFASDAKNRFDAYAEEILAQVEAAKLEYPLFVKPSRAGS 208
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S GV ++ + KAL E + + + ++ E ++ EI
Sbjct: 209 SFGVTKVESRD-----AKALAEAIFEASEHDWR---------------VLVEQGIDAREI 248
Query: 584 LFSSQSTNKNAD-RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEK 640
+ + + + W G V+ K +E+G+ + K
Sbjct: 249 ECAVLAARDGEEPKASWPGEV--------VLDK-------------REAGEDQFYDFDSK 287
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ ++ P + + E L++ ++ A G SR+D+FV D G V++ E+
Sbjct: 288 YMDSAASHVEVP--ANLPAETLERVRKTALAAFKAADGRGLSRVDSFVTKD-GRVILNEI 344
Query: 701 NTVPGMTP 708
NT+PG TP
Sbjct: 345 NTMPGFTP 352
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 30/202 (14%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD-RVVVELFLEGGSEFTAIVLDVGSG 100
VKP+RAGSS GVT D+ A+ I D RV+VE ++ E VL G
Sbjct: 201 VKPSRAGSSFGVTKVESR-DAKALAEAIFEASEHDWRVLVEQGID-AREIECAVLAARDG 258
Query: 101 FDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ P P EV L D RE +D +++ KY+ + P P + +
Sbjct: 259 EE--PKASWPGEVVL------DKREAGEDQFYDFDSKYMDSAASHVEVPANLPAETLERV 310
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R+ A F+ +R+D + T+ G ++ +IN + G
Sbjct: 311 RKTALAAFKAADGRGLSRVDSFV-----------------TKDGRVILNEINTMPGFTPI 353
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + G S+S+++ +I
Sbjct: 354 SMYPKAWEATGISYSDLITKLI 375
>gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
Length = 378
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 125/305 (40%), Gaps = 66/305 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V +HG GEDGT+Q +LE G+PY G GV+AS MDK T + L G+ T
Sbjct: 111 VLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 167
Query: 486 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + P I++ LT L VKPAR G S G++++ EDL ++A
Sbjct: 168 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDLAGAIEA- 221
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+RA P++L+ V + + Q +A R+ G
Sbjct: 222 ------------ARAVD--------PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 259
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
EI + + +G+ E K+ + + P + + EA D
Sbjct: 260 ---EIAMD---------------ASQGAGEFYDYETKYLAHDAVAMVCP--ARIGPEARD 299
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
AL EG +R+D F+ D GE ++ E+NT+PG TP + M
Sbjct: 300 LLMDTAARAFEALGCEGLARVDFFLT-DAGEAVVNEINTMPGFTPFS------------M 346
Query: 724 YPHQF 728
YP+ +
Sbjct: 347 YPYMW 351
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 33/208 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VKP RAGSS+G++ +D + G I +D +V+VE + G E VL G
Sbjct: 195 VKPARAGSSLGISK----VDRPEDLAGAIEAARAVDPKVLVESGIVG-REVEVAVLQ-GR 248
Query: 100 GFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D P V P E+ + QG+ + ++Y KYL VA P R + +
Sbjct: 249 GDDA-PRVAEPGEIAMDASQGAGE------FYDYETKYLAHDAVAMVCPARIGPEARDLL 301
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A+ F+ LG AR+D +FL T+ G + +IN + G
Sbjct: 302 MDTAARAFEALGCEGLARVD-FFL----------------TDAGEAVVNEINTMPGFTPF 344
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSR 246
S G ++ ++ +I A +R
Sbjct: 345 SMYPYMWQVSGLGYTELVSELIELAVAR 372
>gi|156741078|ref|YP_001431207.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
gi|156232406|gb|ABU57189.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
Length = 371
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 128/314 (40%), Gaps = 59/314 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG +GEDGT+Q LLE +PY G GVMAS MDK T +A + A L VL
Sbjct: 110 VFPVLHGPMGEDGTVQGLLELMEIPYVGCGVMASAVGMDKAMTKVAFSG-AGLPVLPWLL 168
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
RR+ + ++D W E + + VKPA G S G++++ L
Sbjct: 169 IRRREWEREPAHVLD-WVE---QRLTYPMFVKPANLGSSVGISKVTGRAAL--------- 215
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
A G+ E D + Q
Sbjct: 216 ------------ARGIAEA-------------AAYDRRIVVEQGIPAR------------ 238
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EI V ++G S+ V SG+ E K+ G L P P ++ E +
Sbjct: 239 -EIEVSILGNNEPEASVPGEVV--PSGEWYDYEAKYLSGASKILIPAPITL---ELAARV 292
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
++ A+ G +R+D +N + G++ + E+NT+PG TP V ++ + E +
Sbjct: 293 RRLAVQAFKAIDGAGLARVDFLLNRETGDLYLNEINTMPGFTP--VSMYAMMWEASGLPY 350
Query: 726 HQFFRKVLDLGSER 739
Q ++++L ER
Sbjct: 351 TQLLDRLIELALER 364
>gi|422831313|ref|ZP_16879459.1| D-alanine-D-alanine ligase B [Escherichia coli B093]
gi|371602264|gb|EHN90970.1| D-alanine-D-alanine ligase B [Escherichia coli B093]
Length = 306
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 139/316 (43%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRR--KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R ++ L + +I + + VKP+R+G S G++++ V AL
Sbjct: 117 LTRAEFEKGLSDKQLAEI------SILGLPVIVKPSREGSSVGMSKV-------VAENAL 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
++ LR+ F +E+L
Sbjct: 164 QDA-LRL-------------------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 181 KWLSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ 233
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 234 --EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 289 QAGMSFSQLVVRILEL 304
>gi|386617601|ref|YP_006137181.1| D-alanine--D-alanine ligase [Escherichia coli NA114]
gi|387828155|ref|YP_003348092.1| D-alanine-D-alanine ligase B [Escherichia coli SE15]
gi|432420207|ref|ZP_19662768.1| D-alanine-D-alanine ligase B [Escherichia coli KTE178]
gi|432498387|ref|ZP_19740168.1| D-alanine-D-alanine ligase B [Escherichia coli KTE216]
gi|432557114|ref|ZP_19793810.1| D-alanine-D-alanine ligase B [Escherichia coli KTE49]
gi|432692771|ref|ZP_19927993.1| D-alanine-D-alanine ligase B [Escherichia coli KTE162]
gi|432708929|ref|ZP_19944000.1| D-alanine-D-alanine ligase B [Escherichia coli KTE6]
gi|432917006|ref|ZP_20121745.1| D-alanine-D-alanine ligase B [Escherichia coli KTE173]
gi|432924236|ref|ZP_20126655.1| D-alanine-D-alanine ligase B [Escherichia coli KTE175]
gi|432979472|ref|ZP_20168262.1| D-alanine-D-alanine ligase B [Escherichia coli KTE211]
gi|433094967|ref|ZP_20281194.1| D-alanine-D-alanine ligase B [Escherichia coli KTE139]
gi|433104270|ref|ZP_20290296.1| D-alanine-D-alanine ligase B [Escherichia coli KTE148]
gi|281177312|dbj|BAI53642.1| D-alanine-D-alanine ligase B [Escherichia coli SE15]
gi|333968102|gb|AEG34907.1| D-alanine--D-alanine ligase [Escherichia coli NA114]
gi|430948213|gb|ELC67894.1| D-alanine-D-alanine ligase B [Escherichia coli KTE178]
gi|431032832|gb|ELD45538.1| D-alanine-D-alanine ligase B [Escherichia coli KTE216]
gi|431095137|gb|ELE00760.1| D-alanine-D-alanine ligase B [Escherichia coli KTE49]
gi|431238226|gb|ELF33165.1| D-alanine-D-alanine ligase B [Escherichia coli KTE162]
gi|431253568|gb|ELF47047.1| D-alanine-D-alanine ligase B [Escherichia coli KTE6]
gi|431448961|gb|ELH29673.1| D-alanine-D-alanine ligase B [Escherichia coli KTE173]
gi|431450725|gb|ELH31210.1| D-alanine-D-alanine ligase B [Escherichia coli KTE175]
gi|431499010|gb|ELH78192.1| D-alanine-D-alanine ligase B [Escherichia coli KTE211]
gi|431621025|gb|ELI89847.1| D-alanine-D-alanine ligase B [Escherichia coli KTE139]
gi|431634988|gb|ELJ03204.1| D-alanine-D-alanine ligase B [Escherichia coli KTE148]
Length = 306
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQSAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|170768438|ref|ZP_02902891.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
gi|170122542|gb|EDS91473.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
Length = 306
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 134/317 (42%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRR--KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R ++ L I DI S L L VKP+R+G S G++++ L
Sbjct: 117 LTRAEFEKGLSDEQIADI-----SALGLP-LIVKPSREGSSVGMSKVVAENTL------- 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ LR+ F +E+L
Sbjct: 164 -QDALRL-------------------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ +G E K+ P E
Sbjct: 181 KWLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPS-----GLE 230
Query: 661 ALDKCKQRIELIANALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
A + + ++ + L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 231 ASQEANLQALVLKAWMTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA-- 287
Query: 719 EQPPMYPHQFFRKVLDL 735
Q + Q ++L+L
Sbjct: 288 RQAGLSFSQLVVRILEL 304
>gi|113460506|ref|YP_718570.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
gi|123131919|sp|Q0I1D1.1|DDL_HAES1 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|112822549|gb|ABI24638.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
Length = 308
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 72/295 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 481
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + +AD+ V+
Sbjct: 63 VFNILHGRGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVV 122
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T +T + ++ + L VKP+ +G S G+ ++ +DL V+
Sbjct: 123 T------------RTSFSQLNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAVE 170
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
F+ + E ++ E ++ D
Sbjct: 171 -------------FALQYD---------ETVLIEEWLSGD-------------------- 188
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV ++G + ++PS+ + G+ E K+ P S ++ E
Sbjct: 189 -----ELTVPILG-----NEVLPSIKIVPQGEFYDYEAKYIADNTQYFCP---SGLTEER 235
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ +Q ++ + + G+SRID ++ G+ ++EVNT PGMT ++ A
Sbjct: 236 EQELRQLVKQAYDVVGCRGWSRIDVMLD-GEGKFRLVEVNTNPGMTSHSLFPKSA 289
>gi|403380171|ref|ZP_10922228.1| DdlB [Paenibacillus sp. JC66]
Length = 379
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 116/287 (40%), Gaps = 65/287 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDKV + A G+
Sbjct: 111 VFPLLHGTFGEDGTVQGLLEMANIPYVGGGVLASAVGMDKV---MMKKLFAQAGLPQCVY 167
Query: 486 DVRRKEDLLKTPIVDIWH-ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+K LK + E+ C VKPA G S GV++ E+L ++A++
Sbjct: 168 RYFKKSQWLKDQAYFLMEIEVAVGYPC---FVKPANLGSSVGVSKASNREEL---LQAID 221
Query: 545 ECL---LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
E L++ I E +V
Sbjct: 222 EAFRYDLKV----------------------IVEEYV----------------------- 236
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
N+R EI V V+G S+ V S + K+ G + P +S E
Sbjct: 237 NAR--EIEVSVLGNDDPQASVPGEVV--SSNEFYDYRAKYIDGKSALIIPAE---VSEET 289
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + A++ G +R+D FV D+G++L+ E+NT+PG TP
Sbjct: 290 AKQLRDMAITAFQAIEGSGLARVDFFVGKDDGKILVNEINTMPGFTP 336
>gi|343522668|ref|ZP_08759634.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343402077|gb|EGV14583.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces sp. oral
taxon 175 str. F0384]
Length = 378
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 125/305 (40%), Gaps = 66/305 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V +HG GEDGT+Q +LE G+PY G GV+AS MDK T + L G+ T
Sbjct: 111 VLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 167
Query: 486 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + P I++ LT L VKPAR G S G++++ EDL ++A
Sbjct: 168 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDLAGAIEA- 221
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+RA P++L+ V + + Q +A R+ G
Sbjct: 222 ------------ARAVD--------PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 259
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
EI + + +G+ E K+ + + P + + EA D
Sbjct: 260 ---EIAMD---------------ASQGAGEFYDYETKYLAHDAVAMVCP--ARIGPEARD 299
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
AL EG +R+D F+ D GE ++ E+NT+PG TP + M
Sbjct: 300 LLMDTAARAFEALGCEGLARVDFFLT-DAGEAVVNEINTMPGFTPFS------------M 346
Query: 724 YPHQF 728
YP+ +
Sbjct: 347 YPYMW 351
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 33/208 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VKP RAGSS+G++ +D + G I +D +V+VE + G E VL G
Sbjct: 195 VKPARAGSSLGISK----VDRPEDLAGAIEAARAVDPKVLVESGIVG-REVEVAVLQ-GR 248
Query: 100 GFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D P V P E+ + QG+ + ++Y KYL VA P R + +
Sbjct: 249 GDDA-PRVAEPGEIAMDASQGAGE------FYDYETKYLAHDAVAMVCPARIGPEARDLL 301
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A+ F+ LG AR+D +FL T+ G + +IN + G
Sbjct: 302 MDTAARAFEALGCEGLARVD-FFL----------------TDAGEAVVNEINTMPGFTPF 344
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSR 246
S G ++ ++ +I A +R
Sbjct: 345 SMYPYMWQVSGLGYTELVSELIELAVAR 372
>gi|420236340|ref|ZP_14740826.1| D-alanyl-alanine synthetase A [Parascardovia denticolens IPLA
20019]
gi|391880516|gb|EIT89007.1| D-alanyl-alanine synthetase A [Parascardovia denticolens IPLA
20019]
Length = 400
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 119/287 (41%), Gaps = 42/287 (14%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE G+PY G GV+AS CMDK T + L I
Sbjct: 125 AVFPVLHGPYGEDGTIQGLLEMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGIT 184
Query: 485 KDVRRKEDLLK-TPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
D R + P + +L + + L VKP+R G S GV ++ D T
Sbjct: 185 VDTRSYDSAQGFAPQGKVLCDLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQAD 244
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS-TNKNADRLMWKG 601
L + + + ++ E ++ EI + + + + R W G
Sbjct: 245 LAAAVHEAARHDWR---------------VLVEEGIKAREIECAVLAPRHGDKPRTSWPG 289
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
EI + G +G + K+ + ++ P + +S E
Sbjct: 290 -----EIVLDEPG----------------NGAFYDFDSKYMDSSASHVEVP--AKLSQET 326
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
L + ++ A+ +G SR+D FV + G V++ E+NT+PG TP
Sbjct: 327 LQEVRRVAARAFTAVDGDGLSRVDTFVT-EEGTVIVNEINTLPGFTP 372
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 42 VKPTRAGSSIGVT-VAYGVIDSLKKAK--GIILEGI--DDRVVVELFLEGGSEFTAIVLD 96
VKP+RAGSS GVT V Y + ++A + E D RV+VE ++ E VL
Sbjct: 218 VKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEGIKA-REIECAVLA 276
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G P P E+ L G+ A +++ KY+ + P + +
Sbjct: 277 PRHG--DKPRTSWPGEIVLDEPGN------GAFYDFDSKYMDSSASHVEVPAKLSQETLQ 328
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A+ F + +R+D + TE GT++ +IN + G
Sbjct: 329 EVRRVAARAFTAVDGDGLSRVDTFV-----------------TEEGTVIVNEINTLPGFT 371
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
S + G S+ ++ T+I
Sbjct: 372 PISMYSKAWEATGVSYRELITTLI 395
>gi|191167773|ref|ZP_03029580.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
gi|193070839|ref|ZP_03051772.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
gi|293476752|ref|ZP_06665160.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
gi|309796082|ref|ZP_07690494.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
gi|331650989|ref|ZP_08352017.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli M718]
gi|417126917|ref|ZP_11974471.1| D-alanine--D-alanine ligase [Escherichia coli 97.0246]
gi|417151375|ref|ZP_11990902.1| D-alanine--D-alanine ligase [Escherichia coli 1.2264]
gi|417273822|ref|ZP_12061167.1| D-alanine--D-alanine ligase [Escherichia coli 2.4168]
gi|417606016|ref|ZP_12256550.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_DG131-3]
gi|417670225|ref|ZP_12319754.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_O31]
gi|419276190|ref|ZP_13818463.1| D-alanine--D-alanine ligase [Escherichia coli DEC10E]
gi|419373520|ref|ZP_13914583.1| D-alanine--D-alanine ligase [Escherichia coli DEC14B]
gi|419378947|ref|ZP_13919931.1| D-alanine--D-alanine ligase [Escherichia coli DEC14C]
gi|419384209|ref|ZP_13925118.1| D-alanine--D-alanine ligase [Escherichia coli DEC14D]
gi|422776731|ref|ZP_16830385.1| D-alanine-D-alanine ligase [Escherichia coli H120]
gi|422783142|ref|ZP_16835926.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
gi|422834385|ref|ZP_16882447.1| D-alanine-D-alanine ligase B [Escherichia coli E101]
gi|432483736|ref|ZP_19725665.1| D-alanine-D-alanine ligase B [Escherichia coli KTE212]
gi|432668916|ref|ZP_19904471.1| D-alanine-D-alanine ligase B [Escherichia coli KTE119]
gi|433171860|ref|ZP_20356430.1| D-alanine-D-alanine ligase B [Escherichia coli KTE232]
gi|190902199|gb|EDV61941.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
gi|192955869|gb|EDV86339.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
gi|254967073|gb|ACT97575.1| D-alanine-D-alanine ligase B [mixed culture bacterium
CY_gF1DD01_05]
gi|254967084|gb|ACT97583.1| D-alanine-D-alanine ligase B [mixed culture bacterium
CY_gF1DD01_10]
gi|291321205|gb|EFE60647.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
gi|308120324|gb|EFO57586.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
gi|323945721|gb|EGB41769.1| D-alanine-D-alanine ligase [Escherichia coli H120]
gi|323975744|gb|EGB70840.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
gi|331051443|gb|EGI23492.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli M718]
gi|345366870|gb|EGW98959.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_DG131-3]
gi|371601905|gb|EHN90624.1| D-alanine-D-alanine ligase B [Escherichia coli E101]
gi|378135110|gb|EHW96423.1| D-alanine--D-alanine ligase [Escherichia coli DEC10E]
gi|378228054|gb|EHX88221.1| D-alanine--D-alanine ligase [Escherichia coli DEC14B]
gi|378235447|gb|EHX95517.1| D-alanine--D-alanine ligase [Escherichia coli DEC14C]
gi|378237873|gb|EHX97887.1| D-alanine--D-alanine ligase [Escherichia coli DEC14D]
gi|386145167|gb|EIG91631.1| D-alanine--D-alanine ligase [Escherichia coli 97.0246]
gi|386159566|gb|EIH21380.1| D-alanine--D-alanine ligase [Escherichia coli 1.2264]
gi|386234004|gb|EII65984.1| D-alanine--D-alanine ligase [Escherichia coli 2.4168]
gi|397782680|gb|EJK93548.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_O31]
gi|431019961|gb|ELD33352.1| D-alanine-D-alanine ligase B [Escherichia coli KTE212]
gi|431214621|gb|ELF12375.1| D-alanine-D-alanine ligase B [Escherichia coli KTE119]
gi|431697164|gb|ELJ62309.1| D-alanine-D-alanine ligase B [Escherichia coli KTE232]
Length = 306
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|357053680|ref|ZP_09114772.1| hypothetical protein HMPREF9467_01744 [Clostridium clostridioforme
2_1_49FAA]
gi|355385306|gb|EHG32358.1| hypothetical protein HMPREF9467_01744 [Clostridium clostridioforme
2_1_49FAA]
Length = 353
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 133/315 (42%), Gaps = 59/315 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV++S MDK+ T + + DLGV
Sbjct: 97 VFPVLHGLYGEDGTIQGLLELAKIPYVGCGVLSSAVSMDKLYTKIIVE---DLGVRQAAY 153
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ +E L+ V E K + +KP+ G S GV + A+D +ALE
Sbjct: 154 EAVYREQLVHMESV---VERVEKHFSYPVFIKPSNAGSSRGVTK---ADDR----QALEA 203
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
G++E +IL+ E T + + ++ G +
Sbjct: 204 --------------GLLEAARHDRKILVEETI------------TGREIECAVFGGGLK- 236
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+ +G+ + + + E K+ +T P + A ++
Sbjct: 237 -EVVASGVGE------------ILAAAEFYDFEAKYYNEESRTVTDPE---LPAGAAERV 280
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
+Q I A+ G +R+D FV D+GEV+ E+NT+PG T + ++ L E +
Sbjct: 281 RQSAVDIFRAVDGYGLARVDFFVK-DDGEVVFNEINTMPGFT--AISMYPMLWEARGITK 337
Query: 726 HQFFRKVLDLGSERF 740
Q ++ G ER+
Sbjct: 338 DQLVDMLMAHGMERY 352
>gi|415837650|ref|ZP_11519662.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1]
gi|417284737|ref|ZP_12072032.1| D-alanine--D-alanine ligase [Escherichia coli 3003]
gi|425275957|ref|ZP_18667314.1| D-alanine--D-alanine ligase 2 [Escherichia coli ARS4.2123]
gi|323190226|gb|EFZ75502.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1]
gi|386242946|gb|EII84681.1| D-alanine--D-alanine ligase [Escherichia coli 3003]
gi|408207704|gb|EKI32417.1| D-alanine--D-alanine ligase 2 [Escherichia coli ARS4.2123]
Length = 306
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P + EA
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQSAGTFYDYEAKYLSDETQYFCP-----VGLEAS 232
Query: 663 DKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
>gi|406919879|gb|EKD58046.1| hypothetical protein ACD_57C00042G0011 [uncultured bacterium]
Length = 266
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 126/296 (42%), Gaps = 70/296 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VFIA+HG GEDGT+Q LE GVPYTG G++AS MDK+++ G+
Sbjct: 20 VVFIAMHGPNGEDGTIQGFLELIGVPYTGSGILASALGMDKISSR---KLFTQAGLKVPE 76
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
V +K+D +P + +W + + VKP G S G T VK E
Sbjct: 77 YLVLQKDD---SPQI-VWKKFKP-----PVFVKPHNQGSSVG----------TTLVK--E 115
Query: 545 ECLLRIPPN-SFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ LR N +F +H + + E F++
Sbjct: 116 KNKLRDALNLAFDFSH-----------LALAEEFLD------------------------ 140
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
+EIT ++G + +P V + D + K+ + P S +AL
Sbjct: 141 -GIEITCPILG--NNKPKALPVVEIVPKRDFFDYKAKYNDKLCDEIVPARIS----KALT 193
Query: 664 KCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
K Q+I L A +L GF R+D +N + ++EVNT+PG+TP ++ A++
Sbjct: 194 KKAQQIALTAYQSLGCSGFGRVDMIAKGNN--IYVLEVNTIPGLTPVSLFPKSAVA 247
>gi|399888425|ref|ZP_10774302.1| D-alanyl-alanine synthetase A [Clostridium arbusti SL206]
Length = 343
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 73/290 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVL 481
VF +HG GEDGT+Q L +P GP VM+S CMDKV T L + AD V+
Sbjct: 86 VFPVLHGLCGEDGTVQGLCRLIDIPCVGPNVMSSAVCMDKVYTKYVLENFGIKQADYVVV 145
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T K K+ ++KT + KL +KP+ G S G+
Sbjct: 146 TAIKYSENKDQIIKT--------IEEKLDYDVF-IKPSNSGSSVGI-------------- 182
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
++AH E+ + E L ++ V ++ +
Sbjct: 183 --------------TKAHNKKELMDGIEEALKYDRKVLVEKAI----------------- 211
Query: 602 NSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
N+R E+ V V+G + G ++P + + E K++ + P + M
Sbjct: 212 NAR--EVEVAVLGNDKPQAGVPGEILP------AKEFYDYEAKYEDAESKLMIP---ANM 260
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + L+K K+ I L G +R+D V+ E+ + EVNT+PG T
Sbjct: 261 NDKELEKIKELATRIYTDLDCAGMARVDFLVDKVTSEIYLNEVNTIPGFT 310
>gi|215485258|ref|YP_002327689.1| D-alanine--D-alanine ligase [Escherichia coli O127:H6 str.
E2348/69]
gi|312966220|ref|ZP_07780446.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
gi|416333784|ref|ZP_11670892.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327]
gi|417753909|ref|ZP_12402006.1| D-alanine--D-alanine ligase [Escherichia coli DEC2B]
gi|418995113|ref|ZP_13542733.1| D-alanine--D-alanine ligase [Escherichia coli DEC1A]
gi|419000251|ref|ZP_13547818.1| D-alanine--D-alanine ligase [Escherichia coli DEC1B]
gi|419005809|ref|ZP_13553267.1| D-alanine--D-alanine ligase [Escherichia coli DEC1C]
gi|419011640|ref|ZP_13559010.1| D-alanine--D-alanine ligase B [Escherichia coli DEC1D]
gi|419016578|ref|ZP_13563906.1| D-alanine--D-alanine ligase [Escherichia coli DEC1E]
gi|419022170|ref|ZP_13569419.1| D-alanine--D-alanine ligase B [Escherichia coli DEC2A]
gi|419027065|ref|ZP_13574269.1| D-alanine--D-alanine ligase [Escherichia coli DEC2C]
gi|419032954|ref|ZP_13580055.1| D-alanine--D-alanine ligase [Escherichia coli DEC2D]
gi|419037844|ref|ZP_13584907.1| D-alanine--D-alanine ligase [Escherichia coli DEC2E]
gi|215263330|emb|CAS07645.1| D-alanine: D-alanine ligase [Escherichia coli O127:H6 str.
E2348/69]
gi|312289463|gb|EFR17357.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
gi|320197457|gb|EFW72071.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327]
gi|377850480|gb|EHU15442.1| D-alanine--D-alanine ligase [Escherichia coli DEC1A]
gi|377851550|gb|EHU16495.1| D-alanine--D-alanine ligase [Escherichia coli DEC1C]
gi|377855179|gb|EHU20054.1| D-alanine--D-alanine ligase [Escherichia coli DEC1B]
gi|377865174|gb|EHU29966.1| D-alanine--D-alanine ligase B [Escherichia coli DEC1D]
gi|377867785|gb|EHU32539.1| D-alanine--D-alanine ligase [Escherichia coli DEC1E]
gi|377869253|gb|EHU33970.1| D-alanine--D-alanine ligase B [Escherichia coli DEC2A]
gi|377880839|gb|EHU45405.1| D-alanine--D-alanine ligase [Escherichia coli DEC2B]
gi|377884885|gb|EHU49393.1| D-alanine--D-alanine ligase [Escherichia coli DEC2D]
gi|377886301|gb|EHU50783.1| D-alanine--D-alanine ligase [Escherichia coli DEC2C]
gi|377899352|gb|EHU63700.1| D-alanine--D-alanine ligase [Escherichia coli DEC2E]
Length = 306
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 135/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ L +
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKVVAENTL--------Q 164
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 165 DALRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|392540293|ref|ZP_10287430.1| D-alanine-D-alanine ligase B [Pseudoalteromonas piscicida JCM
20779]
Length = 303
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 115/295 (38%), Gaps = 83/295 (28%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGT+Q LE G+PYTG GV+ S MDKV K
Sbjct: 61 VFIALHGRGGEDGTIQGALEFMGIPYTGSGVLGSALAMDKVRC----------------K 104
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLC-------VKPARDGCSTGVARLCCAEDLTV 538
+ + L P + E + K L VKP+ +G S G+A+ E LT
Sbjct: 105 HLFQSAKLSTAPYAVVSKE--TGFDAKALIAEFGKVMVKPSHEGSSIGMAQADSEETLTA 162
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+ N+F F+ D++L T +
Sbjct: 163 ALN-----------NAFK-----------------FD-----DQVLVEQWITGR------ 183
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
E TV ++GK +P + ++ E K+Q + P S
Sbjct: 184 --------EFTVSMLGK-----EALPVIEMRTPRGFYDYEAKYQVNSTEYYCPADISAAH 230
Query: 659 TEALD-KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
TE L K EL+ G+ R+DA + + G ++EVNTVPGMT +++
Sbjct: 231 TEQLQVMAKHAFELVGAT----GWGRVDAMQD-EQGHFYLLEVNTVPGMTEKSLV 280
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 43/206 (20%)
Query: 28 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLE 85
F L GKV+VKP+ GSSIG+ A DS + + DD+V+VE ++
Sbjct: 126 FDAKALIAEFGKVMVKPSHEGSSIGMAQA----DSEETLTAALNNAFKFDDQVLVEQWIT 181
Query: 86 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 145
G EFT +L G + PV +++R ++Y KY Y+
Sbjct: 182 -GREFTVSML----GKEALPV--------------IEMRTPRGFYDYEAKY-QVNSTEYY 221
Query: 146 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 205
P ++ A F+ +G + R+D E G
Sbjct: 222 CPADISAAHTEQLQVMAKHAFELVGATGWGRVDAM-----------------QDEQGHFY 264
Query: 206 FTDINLISGMEQTSFLFQQASKVGFS 231
++N + GM + S + A G S
Sbjct: 265 LLEVNTVPGMTEKSLVPMAAKATGVS 290
>gi|387771002|ref|ZP_10127174.1| D-alanine--D-alanine ligase [Pasteurella bettyae CCUG 2042]
gi|386902921|gb|EIJ67742.1| D-alanine--D-alanine ligase [Pasteurella bettyae CCUG 2042]
Length = 307
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 128/322 (39%), Gaps = 75/322 (23%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G+D P + + + L K+ F +HG GEDG +Q +LE G+PYTG GVM
Sbjct: 38 GYDAYPIDPKEYPVAD---LKKQGFDRAFNILHGRGGEDGVIQGVLEQIGLPYTGCGVMT 94
Query: 459 SKTCMDKVATSLALNH----LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + +AD+ ++T +D R +++ E + L
Sbjct: 95 SALTMDKMRTKMLWKGFGLPIADMEIVT--RDTR----------LELNPERIVEHLGLPL 142
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574
VKP+R+G S G+ ++ E+L V + H
Sbjct: 143 MVKPSREGSSVGLTKVNAVEELEAAV-------------DLALTH--------------- 174
Query: 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 634
D IL W +E+TV V+ ++P+V + G+
Sbjct: 175 -----DDTILIEE-----------WLSG---IEMTVPVLD-----DQVLPAVQIIPEGEF 210
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
+ K+ + P P S E L K +R + + G+SRID + GE
Sbjct: 211 YDYDAKYISDNTQYVCPAPMSKEREEELQKLVKR---AYDVIGCRGWSRIDVMTDA-KGE 266
Query: 695 VLIIEVNTVPGMTPSTVLIHQA 716
++EVNT PGMT ++ A
Sbjct: 267 FRLVEVNTTPGMTSHSLFPKSA 288
>gi|432944659|ref|ZP_20141069.1| D-alanine-D-alanine ligase B [Escherichia coli KTE196]
gi|433041589|ref|ZP_20229128.1| D-alanine-D-alanine ligase B [Escherichia coli KTE117]
gi|431464590|gb|ELH44709.1| D-alanine-D-alanine ligase B [Escherichia coli KTE196]
gi|431561234|gb|ELI34618.1| D-alanine-D-alanine ligase B [Escherichia coli KTE117]
Length = 306
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMNFSQLVVRILEL 304
>gi|46199525|ref|YP_005192.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB27]
gi|81405628|sp|Q72IA9.1|DDL_THET2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|46197151|gb|AAS81565.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27]
Length = 319
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 115/312 (36%), Gaps = 82/312 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L E VF +HG GEDGT+Q LE G PY G GV AS CMDK L+ LA
Sbjct: 69 LPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDK---DLSKRVLAQ 125
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK + P VKPA G S G++R+ +DL
Sbjct: 126 AGVPVVPWVAVRKGEPSMVPF------------DPPFFVKPANTGSSVGISRVERFQDL- 172
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 173 -------EAALAL--------------------------------------AFRYDEKAV 187
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 188 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 245
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E + Q + L A L + G +R+D F+ GEV + E+NT+PG TP++
Sbjct: 246 TQETV----QELALKAYKVLGVRGMARVDFFLA--EGEVYLNELNTIPGFTPTS------ 293
Query: 717 LSEQPPMYPHQF 728
MYP F
Sbjct: 294 ------MYPRLF 299
>gi|409201089|ref|ZP_11229292.1| D-alanine-D-alanine ligase B [Pseudoalteromonas flavipulchra JG1]
Length = 303
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 115/295 (38%), Gaps = 83/295 (28%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGT+Q LE G+PYTG GV+ S MDKV K
Sbjct: 61 VFIALHGRGGEDGTIQGALEFMGIPYTGSGVLGSALAMDKVRC----------------K 104
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLC-------VKPARDGCSTGVARLCCAEDLTV 538
+ + L P + E + K L VKP+ +G S G+A+ E LT
Sbjct: 105 HLFQSAKLSTAPYAVVSKE--TGFDAKALIAEFGKVMVKPSHEGSSIGMAQADSEETLTA 162
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+ N+F F+ D++L T +
Sbjct: 163 ALN-----------NAFK-----------------FD-----DQVLVEQWITGR------ 183
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
E TV ++GK +P + ++ E K+Q + P S
Sbjct: 184 --------EFTVSMLGK-----EALPVIEMRTPRGFYDYEAKYQVNSTEYYCPADISAAH 230
Query: 659 TEALD-KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
TE L K EL+ G+ R+DA + + G ++EVNTVPGMT +++
Sbjct: 231 TEQLQVMAKHAFELVGAT----GWGRVDAMQD-EQGHFYLLEVNTVPGMTEKSLV 280
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 43/215 (20%)
Query: 28 FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLE 85
F L GKV+VKP+ GSSIG+ A DS + + DD+V+VE ++
Sbjct: 126 FDAKALIAEFGKVMVKPSHEGSSIGMAQA----DSEETLTAALNNAFKFDDQVLVEQWIT 181
Query: 86 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 145
G EFT +L G + PV +++R ++Y KY Y+
Sbjct: 182 -GREFTVSML----GKEALPV--------------IEMRTPRGFYDYEAKY-QVNSTEYY 221
Query: 146 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 205
P ++ A F+ +G + R+D E G
Sbjct: 222 CPADISAAHTEQLQVMAKHAFELVGATGWGRVDAM-----------------QDEQGHFY 264
Query: 206 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
++N + GM + S + A G S ++ I+
Sbjct: 265 LLEVNTVPGMTEKSLVPMAAKATGVSFEQLVVRIL 299
>gi|417306619|ref|ZP_12093509.1| D-alanine--D-alanine ligase 1 [Escherichia coli PCN033]
gi|338771825|gb|EGP26555.1| D-alanine--D-alanine ligase 1 [Escherichia coli PCN033]
Length = 306
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTCHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|395008136|ref|ZP_10391824.1| D-alanine--D-alanine ligase [Acidovorax sp. CF316]
gi|394313928|gb|EJE50890.1| D-alanine--D-alanine ligase [Acidovorax sp. CF316]
Length = 331
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 132/303 (43%), Gaps = 75/303 (24%)
Query: 411 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 470
S NE +L ++ A FIA+HG GEDGT+Q LE +PYTGPGVMAS +DK+ T
Sbjct: 59 SQNELGELRRDGYARCFIALHGRHGEDGTVQGALELLRIPYTGPGVMASSIAVDKIMT-- 116
Query: 471 ALNHLADLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCST 525
K + R E L TP +V E T L + VKP+R+G +
Sbjct: 117 --------------KRIWRAEG-LPTPDWRLVGSVAETTDALAALGAPMIVKPSREGSTI 161
Query: 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585
G+ + V + E+C ++A+ + + PE+L E F+E +
Sbjct: 162 GLTK----------VTSPEQC---------AQAYALASRYD--PEVLC-EQFIEGE---- 195
Query: 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
E T ++G+ S ++L V G+ + F T
Sbjct: 196 ---------------------ETTCPILGEGTSAYALPVIRIVAPEGNYDYQNKYF---T 231
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704
+ P+ + EA ++ QR+ + A +L G++R D + + + ++E+NT P
Sbjct: 232 DVTQYHCPSGL--PEAEEREIQRLVVAAFRSLGCRGWARADIMIRASDRQPFLLEINTSP 289
Query: 705 GMT 707
GMT
Sbjct: 290 GMT 292
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 36/220 (16%)
Query: 30 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-IDDRVVVELFLEGGS 88
T+ L ++VKP+R GS+IG+T V + A+ L D V+ E F+E G
Sbjct: 140 TDALAALGAPMIVKPSREGSTIGLTK---VTSPEQCAQAYALASRYDPEVLCEQFIE-GE 195
Query: 89 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 148
E T +L G+ PV + + + ++Y+ KY T YH P
Sbjct: 196 ETTCPILGEGTSAYALPV--------------IRIVAPEGNYDYQNKYF-TDVTQYHCPS 240
Query: 149 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 208
P I+ F+ LG +AR D S F +
Sbjct: 241 GLPEAEEREIQRLVVAAFRSLGCRGWARADIMIRASDRQPF----------------LLE 284
Query: 209 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFP 248
IN GM S + A G S+ ++ ++ A P
Sbjct: 285 INTSPGMTGHSLVPMSARASGISYEDLCVGVLASATMDTP 324
>gi|354557451|ref|ZP_08976709.1| D-alanine--D-alanine ligase [Desulfitobacterium metallireducens DSM
15288]
gi|353550245|gb|EHC19682.1| D-alanine--D-alanine ligase [Desulfitobacterium metallireducens DSM
15288]
Length = 364
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 131/318 (41%), Gaps = 66/318 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F +HG GEDGT+Q L E VPY G GV+ + MDK A+ G+
Sbjct: 100 IFPVLHGPFGEDGTIQGLFEMSNVPYVGSGVLGASLGMDKDRMKAV---FAEAGL----- 151
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ R LL+T D ++ ++++ + +KPA G S G+++ EDL K+
Sbjct: 152 PMARTFTLLRTQYNDDSDQILNRIELEIGYPCFIKPANLGSSVGISKAYNREDLR---KS 208
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+E L + R +L+ + N
Sbjct: 209 IELAAL------YDR--------------------------------------KLVIEEN 224
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V V+G S+ + + D E K+ + L P P + TE +
Sbjct: 225 INGREIEVSVLGNESPQASVPGEIL--PANDFYDYEAKYHDTSSRLLIPAP---LETETM 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+K ++ A++ G SR+D F+ D ++ + E+NT+PG T + ++ L E
Sbjct: 280 NKLQKMAVKAFQAVEASGLSRVDFFLTSDQ-KIYVNEINTMPGFT--QISMYPKLWEASG 336
Query: 723 MYPHQFFRKVLDLGSERF 740
+ + +++ LG ERF
Sbjct: 337 IPYLELIDRLISLGLERF 354
>gi|291279001|ref|YP_003495836.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
gi|290753703|dbj|BAI80080.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
Length = 291
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 121/287 (42%), Gaps = 77/287 (26%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDG++Q LLE G+PY G GV AS DK HL + V ++
Sbjct: 59 FIALHGKYGEDGSIQGLLEVLGIPYNGAGVAASAIAYDK--------HLTKVLVQSVG-- 108
Query: 487 VRRKEDLLKTPIVDIWH-ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+KTP D + E ++ VKPAR+G + G++ VK+ +E
Sbjct: 109 -------IKTP--DYYLCENDKDIRFLPAVVKPAREGSTIGIS----------IVKSKDE 149
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
FS+A E +LI E F+E
Sbjct: 150 ---------FSKAFS--EAKKYDSRVLI-ERFIEGK------------------------ 173
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+TVG+I + ++P++ +K E K+ G + ++ T+ L+
Sbjct: 174 -ELTVGIIN-----NEVLPTIYIKPIKGFYDYESKYTKGMTEYIFETGLNVDETDKLNNI 227
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ +A+ + RID D E ++EVNT+PGMT +++L
Sbjct: 228 SLK---VADLIGCSSLCRIDYI--YDGKEFFLLEVNTIPGMTETSLL 269
>gi|345432595|dbj|BAK68939.1| D-alanylalanine synthetase [Vibrio parahaemolyticus]
Length = 282
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 112/291 (38%), Gaps = 63/291 (21%)
Query: 422 NQATVFIA--VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
NQ FI +HG GE G +QSL E G+PY G G AS +K+ + L + L
Sbjct: 50 NQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL---- 105
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK--TLCVKPARDGCSTGVARLCCAEDLT 537
D+ L T + H + K + VK AR G S G
Sbjct: 106 ------DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGC---------- 149
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
Y A ++ + R ++F + D++
Sbjct: 150 -YSVAEKQAIARAVNDAFGYS------------------------------------DQV 172
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ + + E+ V G +H P + G S +EK+ + +LT A +
Sbjct: 173 LVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH-SLTEVEAKNL 231
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ E +DK + E + + L SRID F+ DN E+ + EVNT PGMTP
Sbjct: 232 TQEQIDKIRHASETVFKQMNLRHLSRIDFFLTEDN-EIYLNEVNTFPGMTP 281
>gi|429096164|ref|ZP_19158270.1| D-alanine--D-alanine ligase B [Cronobacter dublinensis 582]
gi|426282504|emb|CCJ84383.1| D-alanine--D-alanine ligase B [Cronobacter dublinensis 582]
Length = 306
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 135/328 (41%), Gaps = 83/328 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ L+ G+PYTG AS MDK T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGTLDYLGLPYTGSAAKASAITMDKRRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V + RR DI L+ L+ + + VKP+R+G S G++++
Sbjct: 109 LPVASWVALERR----------DIASGLSETLKARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
A+ L + ALE L FE E+L
Sbjct: 159 SADAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILG-----DEILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P +AL Q + L A L +G+ R+D + D GE ++EVNT PGMT
Sbjct: 224 FCPSGIDADHEQAL----QALVLEAWRVLGCQGWGRVDVMQDSD-GEFYLLEVNTAPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q M Q ++L+L
Sbjct: 279 SHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|407693006|ref|YP_006817795.1| D-alanine--D-alanine ligase [Actinobacillus suis H91-0380]
gi|407389063|gb|AFU19556.1| D-alanine--D-alanine ligase [Actinobacillus suis H91-0380]
Length = 303
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 132/321 (41%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T V R+ + + + ++ +KL VKP+ +G S GV ++ E L
Sbjct: 110 -VGLPTAEMVVVRRGEAVDS------EQIIAKLGLPVF-VKPSSEGSSVGVTKVKTVEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L F I++ E F+
Sbjct: 162 ---LPAVEEAL------KFDS-------------IVLVEAFL------------------ 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
G V + G ++P+V V G+ K+ + P
Sbjct: 182 ---AGKEYSVPVLDG---------QVLPAVQVIPDGEFYDYHAKYVSDNTQYVVPA---- 225
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
++ E + + ++ + + G+SRID + NG ++EVNT PGMT ++ A
Sbjct: 226 LNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ P + +VL+L +
Sbjct: 285 ATVGIPF--EKLVERVLELSA 303
>gi|429104444|ref|ZP_19166313.1| D-alanine--D-alanine ligase B [Cronobacter malonaticus 681]
gi|426291167|emb|CCJ92426.1| D-alanine--D-alanine ligase B [Cronobacter malonaticus 681]
Length = 306
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 136/332 (40%), Gaps = 87/332 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+ YTG +MAS MDK+ T L L A
Sbjct: 50 LKEEGFDKVFIALHGRGGEDGTLQGMLEYLGLSYTGSDMMASAITMDKLRTKL-LWQGAG 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLC 531
L V R+ DI L+ L + + VKP+R+G S G++++
Sbjct: 109 LPVAPWVALERQ----------DITGGLSEALSARIAALGLPVIVKPSREGSSVGMSKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
AE L + ALE L FE E+L
Sbjct: 159 SAEAL---LPALE---------------------------LAFE---HDSEVLV------ 179
Query: 592 KNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
+W+ E TV ++G ++PS+ ++ +G E K+
Sbjct: 180 -----------EKWLSGPEFTVAILG-----DEILPSIRIQPAGVFYDYEAKYLSDETQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
P +AL L+ +A L G+ R+D + D GE ++EVNT PG
Sbjct: 224 FCPAGIDAEREQALQA------LVMDAWRVLGCRGWGRVDVMQDSD-GEFYLLEVNTAPG 276
Query: 706 MTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737
MT +++ A Q M Q ++L+L +
Sbjct: 277 MTSHSLVPMAA--RQAGMSFSQLVVRILELAN 306
>gi|332528461|ref|ZP_08404453.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
gi|332042140|gb|EGI78474.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
Length = 333
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 89/308 (28%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 472
E +L ++ A FIA+HG GEDGT+Q LE G+PYTG GV+AS MDKV T
Sbjct: 51 RELGELKRDGYARCFIALHGRFGEDGTVQGALELLGIPYTGSGVLASSVAMDKVMT---- 106
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCS 524
K + E L TP W +TS + + + VKPAR+G +
Sbjct: 107 ------------KRIWLAEGL-PTPR---WKNVTSVDETRAALAELGAPMIVKPAREGST 150
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G+ ++ D T +C ++A+ + +P +++ E F+ D
Sbjct: 151 IGLTKV---NDAT-------QC---------AQAYQLAAQHDP---LVLCEQFIAGD--- 185
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK-FQG 643
E+TV VIG G+ +P++ + G E K F
Sbjct: 186 ----------------------EVTVPVIGS-GADARALPAIRIVAPGGNYDYEHKYFSD 222
Query: 644 GTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIE 699
GT + P+ + E + RI+ + +AL G++R D ++ ++E
Sbjct: 223 GTQYII---PSGLPEGE-----EARIQDLVLRSFHALGCRGWARADVMIDAKTRTPYLLE 274
Query: 700 VNTVPGMT 707
+NT PGMT
Sbjct: 275 INTSPGMT 282
>gi|432395937|ref|ZP_19638730.1| D-alanine-D-alanine ligase B [Escherichia coli KTE25]
gi|432404975|ref|ZP_19647699.1| D-alanine-D-alanine ligase B [Escherichia coli KTE28]
gi|432439426|ref|ZP_19681791.1| D-alanine-D-alanine ligase B [Escherichia coli KTE189]
gi|432444549|ref|ZP_19686860.1| D-alanine-D-alanine ligase B [Escherichia coli KTE191]
gi|432721688|ref|ZP_19956617.1| D-alanine-D-alanine ligase B [Escherichia coli KTE17]
gi|432726098|ref|ZP_19960987.1| D-alanine-D-alanine ligase B [Escherichia coli KTE18]
gi|432739866|ref|ZP_19974589.1| D-alanine-D-alanine ligase B [Escherichia coli KTE23]
gi|432892663|ref|ZP_20104830.1| D-alanine-D-alanine ligase B [Escherichia coli KTE165]
gi|432989032|ref|ZP_20177705.1| D-alanine-D-alanine ligase B [Escherichia coli KTE217]
gi|433012264|ref|ZP_20200653.1| D-alanine-D-alanine ligase B [Escherichia coli KTE104]
gi|433026459|ref|ZP_20214413.1| D-alanine-D-alanine ligase B [Escherichia coli KTE106]
gi|433109267|ref|ZP_20295151.1| D-alanine-D-alanine ligase B [Escherichia coli KTE150]
gi|433324974|ref|ZP_20402191.1| D-alanine--D-alanine ligase [Escherichia coli J96]
gi|430918959|gb|ELC39910.1| D-alanine-D-alanine ligase B [Escherichia coli KTE25]
gi|430933200|gb|ELC53611.1| D-alanine-D-alanine ligase B [Escherichia coli KTE28]
gi|430969834|gb|ELC86927.1| D-alanine-D-alanine ligase B [Escherichia coli KTE189]
gi|430976661|gb|ELC93519.1| D-alanine-D-alanine ligase B [Escherichia coli KTE191]
gi|431268901|gb|ELF60262.1| D-alanine-D-alanine ligase B [Escherichia coli KTE17]
gi|431277346|gb|ELF68360.1| D-alanine-D-alanine ligase B [Escherichia coli KTE18]
gi|431287238|gb|ELF78056.1| D-alanine-D-alanine ligase B [Escherichia coli KTE23]
gi|431426084|gb|ELH08129.1| D-alanine-D-alanine ligase B [Escherichia coli KTE165]
gi|431499932|gb|ELH78949.1| D-alanine-D-alanine ligase B [Escherichia coli KTE217]
gi|431527886|gb|ELI04600.1| D-alanine-D-alanine ligase B [Escherichia coli KTE106]
gi|431536833|gb|ELI12989.1| D-alanine-D-alanine ligase B [Escherichia coli KTE104]
gi|431633429|gb|ELJ01709.1| D-alanine-D-alanine ligase B [Escherichia coli KTE150]
gi|432346523|gb|ELL41004.1| D-alanine--D-alanine ligase [Escherichia coli J96]
Length = 306
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|384109903|ref|ZP_10010759.1| D-alanine--D-alanine ligase [Treponema sp. JC4]
gi|383868547|gb|EID84190.1| D-alanine--D-alanine ligase [Treponema sp. JC4]
Length = 377
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 115/288 (39%), Gaps = 43/288 (14%)
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
K N VF A+HG GEDGT+Q L E +PY G MAS MDK T + G
Sbjct: 92 KLNIDVVFPALHGTYGEDGTIQGLFEMAEIPYVGCTHMASAVTMDKEKTKMLWESA---G 148
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
+ + ++ +L + + D + E T K + VKP G S G ++ ++L
Sbjct: 149 LPVVPYVCMKRHVMLNSSVYDEFIEATEKELGYPMFVKPCGAGSSNGASKANNRKEL--- 205
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
SF+ I E F+ D+IL N
Sbjct: 206 --------------SFA----------------IMEAFLWDDKILIEKSINNAREIECSV 235
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
GNS +T + + + +P +K + + + K+ G L P +S
Sbjct: 236 TGNS----VTFPAESETEEVLAYVPG-EIKPTHEFYDFDAKYNDENGALLVIPAE--LSE 288
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++K ++ L G SR+D ++ D +V + E+NT+PG T
Sbjct: 289 DGIEKIRKTACAAYRVLDCTGLSRVDFLIDKDTNQVFLNEINTMPGFT 336
>gi|430751179|ref|YP_007214087.1| D-alanine--D-alanine ligase [Thermobacillus composti KWC4]
gi|430735144|gb|AGA59089.1| D-alanine--D-alanine ligase [Thermobacillus composti KWC4]
Length = 386
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 131/316 (41%), Gaps = 61/316 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE G+PY G GV+AS MDKV H L
Sbjct: 120 VVFPLLHGTYGEDGTIQGLLEMAGIPYVGAGVLASAVGMDKVMMKRVFAH-EGLPQCVFR 178
Query: 485 KDVRRKEDL-LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R + D + I++I E++ C VKPA G S G+++ E L ++A+
Sbjct: 179 HFTRAQWDKDAQYFIMEI--EVSLGYPC---FVKPANLGSSVGISKAYNREQL---IQAV 230
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E + R ++ E FV N+
Sbjct: 231 EYAF------RYDRK-------------VLVEEFV-----------------------NA 248
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
R E+ V V+G S++ + S D K+ G + P + + E +
Sbjct: 249 R--ELEVSVLGNDEPRASVVGEIV--SSNDFYDYNAKYIDGKSVMKIP---ADIPEETAE 301
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+ ++ A+ G +R+D F+ ++G + + EVNT+PG TP + ++ L ++ +
Sbjct: 302 QIREMALRAYQAIDGSGLARVDFFLRKEDGRIFLNEVNTMPGFTPFS--MYPLLWKESGL 359
Query: 724 YPHQFFRKVLDLGSER 739
+ K++ L ER
Sbjct: 360 PYRELLDKLIALAFER 375
>gi|254392473|ref|ZP_05007653.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
gi|294815338|ref|ZP_06773981.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
gi|326443692|ref|ZP_08218426.1| D-alanyl-alanine synthetase A [Streptomyces clavuligerus ATCC
27064]
gi|197706140|gb|EDY51952.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
gi|294327937|gb|EFG09580.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
Length = 390
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 128/295 (43%), Gaps = 77/295 (26%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV++S K M +V TS L +G
Sbjct: 127 VFPVLHGPYGEDGTLQGLLELAGVPYVGAGVLSSAVGQDKEYMKRVFTSFGLP----VGP 182
Query: 481 LTINKDVRRKED--LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
T+ + ++D + IVD + + VKPAR G S G+ ++ +DL+
Sbjct: 183 YTVIRPREWEQDASAARKKIVDFTGD-----HGWPVFVKPARAGSSIGITKV---DDLSG 234
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+A+EE +R H P+IL+ E L
Sbjct: 235 LDEAIEE----------ARRHD--------PKILV--------EALL------------- 255
Query: 599 WKGNSRWVEITVGVI----GKCGSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPP 653
R EI GV+ G S+ + +P V +S D E K+ +GI P
Sbjct: 256 -----RGREIECGVLEFEDGPRASVPAEIPPV---QSHDFYDFEAKYIDSASGIVPAP-- 305
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
++ E + ++ +A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 306 ---LTEEQTAEVRRLAVAAFDAASCEGLVRADFFLT-EDGEFVINEINTMPGFTP 356
>gi|302872435|ref|YP_003841071.1| D-alanine--D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
Length = 364
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 132/343 (38%), Gaps = 99/343 (28%)
Query: 420 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 472
K+N+AT VF +HG GEDGT+Q LLE +PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 473 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLV---------------------------------LAIHEAFLYDTK 215
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 636
+L Q+ N EI V+G V V E G+I+ S
Sbjct: 216 VLI-EQAINAR-------------EIECAVLGN--------DEVFVSEPGEIIPSREFYS 253
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ + + P TE + RI I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKI---FECCGMARVDFFVDKDTNKVY 310
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVNT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--SISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 86/225 (38%), Gaps = 35/225 (15%)
Query: 22 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVE 81
S ++F+ S V VKP +GSS+G++ A D + L D +V++E
Sbjct: 162 SAKKDYFIRRIESEFSYPVFVKPANSGSSVGISKAKDREDLVLAIHEAFL--YDTKVLIE 219
Query: 82 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 141
+ E VL F P ++P+ RE ++Y KY+
Sbjct: 220 QAI-NAREIECAVLGNDEVFVSEPGEIIPS------------RE---FYSYEAKYIDDSS 263
Query: 142 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 201
P R P V I++ A+ +++ C AR+D +F+ T+
Sbjct: 264 -ELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVD-FFVDKDTN-------------- 307
Query: 202 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+ F ++N I G S + G +S ++ +I A +
Sbjct: 308 -KVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
>gi|432800411|ref|ZP_20034403.1| D-alanine-D-alanine ligase B [Escherichia coli KTE84]
gi|431352144|gb|ELG38928.1| D-alanine-D-alanine ligase B [Escherichia coli KTE84]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDQQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|365103940|ref|ZP_09333601.1| D-alanine-D-alanine ligase B [Citrobacter freundii 4_7_47CFAA]
gi|363644553|gb|EHL83834.1| D-alanine-D-alanine ligase B [Citrobacter freundii 4_7_47CFAA]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 136/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
R + E L +V E+++ L VKP+R+G S G++ K E
Sbjct: 117 LTRAEFEKGLSDEVVT---EISA--LGLPLIVKPSREGSSVGMS------------KVEE 159
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E L HG + + F +E+L +
Sbjct: 160 ENAL----------HGALAL-----------AFQHDEEVLI-----------------EK 181
Query: 605 WV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 182 WLSGPEFTVAMLGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---AGLEVEQ 233
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ ++ + L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EARLQELVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
+ Q ++L+L
Sbjct: 291 GLSFSQLVVRILEL 304
>gi|442606955|ref|ZP_21021748.1| D-alanine--D-alanine ligase [Escherichia coli Nissle 1917]
gi|441711704|emb|CCQ07725.1| D-alanine--D-alanine ligase [Escherichia coli Nissle 1917]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 137/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVM S MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMVSALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ AE+ AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-VAEN------ALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P EAL
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPA-----GLEAL 232
Query: 663 DKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
>gi|49087034|gb|AAT51407.1| PA4201, partial [synthetic construct]
Length = 347
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 168/438 (38%), Gaps = 138/438 (31%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG + ER VS SG V L++ + ++D +SG
Sbjct: 7 KVAVLFGGSSEERDVSTASGAQVIQALRSAGHQVL-------AVDTASG----------- 48
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
L+ +LA+ ++ + PD + ++ + L G
Sbjct: 49 ----------LLGAEEERRLLASKVKEVPPDSDSLA------IIRSGKQSLLSAGELAGV 92
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ F+A+HGG GEDGTLQ+LL+A G YTG G +AS
Sbjct: 93 DV-----------------------FFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASA 129
Query: 461 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK VA L L GV T + L P + E+ +L L VKP
Sbjct: 130 MAMDKDVAKRLFLAA----GVETAS--------WLMAPASE--EEVREQLGF-PLVVKPN 174
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G + G S H E+ +P +E
Sbjct: 175 SQGSTVG----------------------------LSIVHSQAEL----------QPAIE 196
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLE 638
+ D +M + E+TVGV+ +P + G ++ E
Sbjct: 197 L---------AGRYGDEVMLERFVAGREVTVGVLDD-----QALPVGEILLGGQEVFDYE 242
Query: 639 EKFQGGTGINLTP---PPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGE 694
K+Q G + P PPA ++ EA QR+ L + AL+L G+SR D F + G
Sbjct: 243 HKYQAGAVREVFPADLPPA--IAAEA-----QRLALKVHRALKLSGYSRTD-FRLDEQGR 294
Query: 695 VLIIEVNTVPGMTPSTVL 712
+ +EVNT+PGMT +++L
Sbjct: 295 LWCLEVNTLPGMTATSLL 312
>gi|416895439|ref|ZP_11925340.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v]
gi|417112148|ref|ZP_11964271.1| D-alanine--D-alanine ligase [Escherichia coli 1.2741]
gi|422802593|ref|ZP_16851086.1| D-alanine-D-alanine ligase [Escherichia coli M863]
gi|323964812|gb|EGB60279.1| D-alanine-D-alanine ligase [Escherichia coli M863]
gi|327255070|gb|EGE66673.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v]
gi|386142932|gb|EIG84068.1| D-alanine--D-alanine ligase [Escherichia coli 1.2741]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLDASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|218687969|ref|YP_002396181.1| D-alanine--D-alanine ligase [Escherichia coli ED1a]
gi|222154918|ref|YP_002555057.1| D-alanine--D-alanine ligase B [Escherichia coli LF82]
gi|306815310|ref|ZP_07449459.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
gi|387615437|ref|YP_006118459.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C]
gi|417287596|ref|ZP_12074882.1| D-alanine--D-alanine ligase [Escherichia coli TW07793]
gi|419699015|ref|ZP_14226639.1| D-alanine--D-alanine ligase [Escherichia coli SCI-07]
gi|419912732|ref|ZP_14431179.1| D-alanine--D-alanine ligase [Escherichia coli KD1]
gi|422368252|ref|ZP_16448665.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
gi|422380435|ref|ZP_16460613.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
gi|432384647|ref|ZP_19627560.1| D-alanine-D-alanine ligase B [Escherichia coli KTE15]
gi|432385477|ref|ZP_19628379.1| D-alanine-D-alanine ligase B [Escherichia coli KTE16]
gi|432469014|ref|ZP_19711077.1| D-alanine-D-alanine ligase B [Escherichia coli KTE205]
gi|432512287|ref|ZP_19749534.1| D-alanine-D-alanine ligase B [Escherichia coli KTE224]
gi|432552126|ref|ZP_19788860.1| D-alanine-D-alanine ligase B [Escherichia coli KTE47]
gi|432581283|ref|ZP_19817701.1| D-alanine-D-alanine ligase B [Escherichia coli KTE57]
gi|432609797|ref|ZP_19845973.1| D-alanine-D-alanine ligase B [Escherichia coli KTE72]
gi|432644500|ref|ZP_19880307.1| D-alanine-D-alanine ligase B [Escherichia coli KTE86]
gi|432654134|ref|ZP_19889856.1| D-alanine-D-alanine ligase B [Escherichia coli KTE93]
gi|432697397|ref|ZP_19932573.1| D-alanine-D-alanine ligase B [Escherichia coli KTE169]
gi|432730812|ref|ZP_19965673.1| D-alanine-D-alanine ligase B [Escherichia coli KTE45]
gi|432744016|ref|ZP_19978725.1| D-alanine-D-alanine ligase B [Escherichia coli KTE43]
gi|432762362|ref|ZP_19996827.1| D-alanine-D-alanine ligase B [Escherichia coli KTE46]
gi|432896762|ref|ZP_20107856.1| D-alanine-D-alanine ligase B [Escherichia coli KTE192]
gi|432902392|ref|ZP_20112140.1| D-alanine-D-alanine ligase B [Escherichia coli KTE194]
gi|432941786|ref|ZP_20139284.1| D-alanine-D-alanine ligase B [Escherichia coli KTE183]
gi|432970228|ref|ZP_20159110.1| D-alanine-D-alanine ligase B [Escherichia coli KTE207]
gi|432983814|ref|ZP_20172556.1| D-alanine-D-alanine ligase B [Escherichia coli KTE215]
gi|433027109|ref|ZP_20214989.1| D-alanine-D-alanine ligase B [Escherichia coli KTE109]
gi|433037017|ref|ZP_20224645.1| D-alanine-D-alanine ligase B [Escherichia coli KTE113]
gi|433075939|ref|ZP_20262551.1| D-alanine-D-alanine ligase B [Escherichia coli KTE129]
gi|433080996|ref|ZP_20267476.1| D-alanine-D-alanine ligase B [Escherichia coli KTE133]
gi|433099629|ref|ZP_20285751.1| D-alanine-D-alanine ligase B [Escherichia coli KTE145]
gi|433123251|ref|ZP_20308886.1| D-alanine-D-alanine ligase B [Escherichia coli KTE157]
gi|433142589|ref|ZP_20327775.1| D-alanine-D-alanine ligase B [Escherichia coli KTE168]
gi|433186443|ref|ZP_20370651.1| D-alanine-D-alanine ligase B [Escherichia coli KTE85]
gi|433191413|ref|ZP_20375480.1| D-alanine-D-alanine ligase B [Escherichia coli KTE88]
gi|433196656|ref|ZP_20380596.1| D-alanine-D-alanine ligase B [Escherichia coli KTE94]
gi|218425533|emb|CAR06316.1| D-alanine:D-alanine ligase [Escherichia coli ED1a]
gi|222031923|emb|CAP74661.1| D-alanine--D-alanine ligase B [Escherichia coli LF82]
gi|305850972|gb|EFM51427.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
gi|312944698|gb|ADR25525.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C]
gi|315300007|gb|EFU59245.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
gi|324008327|gb|EGB77546.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
gi|380349899|gb|EIA38163.1| D-alanine--D-alanine ligase [Escherichia coli SCI-07]
gi|386248381|gb|EII94553.1| D-alanine--D-alanine ligase [Escherichia coli TW07793]
gi|388390632|gb|EIL52108.1| D-alanine--D-alanine ligase [Escherichia coli KD1]
gi|430901870|gb|ELC23766.1| D-alanine-D-alanine ligase B [Escherichia coli KTE15]
gi|430911005|gb|ELC32303.1| D-alanine-D-alanine ligase B [Escherichia coli KTE16]
gi|430988148|gb|ELD04648.1| D-alanine-D-alanine ligase B [Escherichia coli KTE205]
gi|431045417|gb|ELD55650.1| D-alanine-D-alanine ligase B [Escherichia coli KTE224]
gi|431087825|gb|ELD93746.1| D-alanine-D-alanine ligase B [Escherichia coli KTE47]
gi|431123043|gb|ELE25786.1| D-alanine-D-alanine ligase B [Escherichia coli KTE57]
gi|431152428|gb|ELE53379.1| D-alanine-D-alanine ligase B [Escherichia coli KTE72]
gi|431185504|gb|ELE85233.1| D-alanine-D-alanine ligase B [Escherichia coli KTE86]
gi|431196182|gb|ELE95127.1| D-alanine-D-alanine ligase B [Escherichia coli KTE93]
gi|431247586|gb|ELF41807.1| D-alanine-D-alanine ligase B [Escherichia coli KTE169]
gi|431278826|gb|ELF69799.1| D-alanine-D-alanine ligase B [Escherichia coli KTE45]
gi|431296389|gb|ELF86101.1| D-alanine-D-alanine ligase B [Escherichia coli KTE43]
gi|431302557|gb|ELF91737.1| D-alanine-D-alanine ligase B [Escherichia coli KTE46]
gi|431430906|gb|ELH12685.1| D-alanine-D-alanine ligase B [Escherichia coli KTE192]
gi|431438521|gb|ELH19895.1| D-alanine-D-alanine ligase B [Escherichia coli KTE194]
gi|431456387|gb|ELH36731.1| D-alanine-D-alanine ligase B [Escherichia coli KTE183]
gi|431487670|gb|ELH67314.1| D-alanine-D-alanine ligase B [Escherichia coli KTE207]
gi|431507880|gb|ELH86162.1| D-alanine-D-alanine ligase B [Escherichia coli KTE215]
gi|431546826|gb|ELI21213.1| D-alanine-D-alanine ligase B [Escherichia coli KTE109]
gi|431557125|gb|ELI30899.1| D-alanine-D-alanine ligase B [Escherichia coli KTE113]
gi|431579140|gb|ELI51725.1| D-alanine-D-alanine ligase B [Escherichia coli KTE129]
gi|431607248|gb|ELI76618.1| D-alanine-D-alanine ligase B [Escherichia coli KTE133]
gi|431624446|gb|ELI93066.1| D-alanine-D-alanine ligase B [Escherichia coli KTE145]
gi|431636684|gb|ELJ04814.1| D-alanine-D-alanine ligase B [Escherichia coli KTE157]
gi|431667969|gb|ELJ34545.1| D-alanine-D-alanine ligase B [Escherichia coli KTE168]
gi|431698857|gb|ELJ63882.1| D-alanine-D-alanine ligase B [Escherichia coli KTE85]
gi|431699482|gb|ELJ64487.1| D-alanine-D-alanine ligase B [Escherichia coli KTE88]
gi|431726840|gb|ELJ90608.1| D-alanine-D-alanine ligase B [Escherichia coli KTE94]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|167630619|ref|YP_001681118.1| D-alanyl-alanine synthetase A [Heliobacterium modesticaldum Ice1]
gi|190359140|sp|B0TAZ6.1|DDL_HELMI RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|167593359|gb|ABZ85107.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum
Ice1]
Length = 366
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 145/377 (38%), Gaps = 82/377 (21%)
Query: 385 NDLVEGLKKH-SWFTGFDIADELPMRHSINEWIK------------LAKENQAT------ 425
N L G+ +H +W+ G ++ D L R + + L +EN T
Sbjct: 37 NVLTIGIDRHGAWWLGSNVIDNL--RKGQQPYGQRVYFIPDPTCPGLIEENPVTRKPVPV 94
Query: 426 --VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI 483
F +HG GEDGT+Q L EA VPY G GV+AS MDK A AL +DL L
Sbjct: 95 DVFFPVLHGPNGEDGTIQGLFEAANVPYVGCGVLASACGMDK-AIMKALFAQSDLPQLPY 153
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+R + + + ++D E+ +L VKPA G S G+++ +L
Sbjct: 154 LVVLRNRWESAREQVID---EVEDRLGYPCF-VKPANMGSSVGISKATNRAEL------- 202
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ F+ V D L + N + GN
Sbjct: 203 ---------------------------VAAFDDAVRYDRKLIVEKGINVREIEVSVLGND 235
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E+ V G+ H + + K+ L P P +
Sbjct: 236 ---EVVASVPGEIVPAH------------EFYDYDAKYAAADSRLLIPAPIAAADVATFQ 280
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+ R A+ G SR+D ++ ++GEV I E+NT+PG T ++ ++ L E +
Sbjct: 281 EMAIR---AFRAIDGSGLSRVDFLLDKNSGEVYINEINTLPGFT--SISMYPKLWEATGI 335
Query: 724 YPHQFFRKVLDLGSERF 740
+ +++DLG R+
Sbjct: 336 PYGELLSRLVDLGLARY 352
>gi|338536719|ref|YP_004670053.1| D-alanine--D-alanine ligase [Myxococcus fulvus HW-1]
gi|337262815|gb|AEI68975.1| D-alanine--D-alanine ligase [Myxococcus fulvus HW-1]
Length = 318
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 141/367 (38%), Gaps = 97/367 (26%)
Query: 368 IEPDRAAFTS-HLRNQVVNDLVEGLKKHSWFT--------------GFDIAD-----ELP 407
+ P+R AFT L+ + V L+ GL + G+D+ D +LP
Sbjct: 1 MTPNRGAFTKDELKQKRVGVLLGGLSAERDVSLRTGEAVSGALRGLGYDVVDIDVGRDLP 60
Query: 408 MRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV- 466
R LA E ++AVHG GEDG LQ LLE+ +PYTG GV+AS MDKV
Sbjct: 61 AR--------LAAEKVDVAWLAVHGRYGEDGCLQGLLESLFIPYTGSGVLASALGMDKVY 112
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
A + + H G+ T R + + VKP+R+G S G
Sbjct: 113 AKQVFVAH----GIPTPAYRSFRDAASALAAADSLSFPF-------PVVVKPSREGSSVG 161
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
V +C D +E V
Sbjct: 162 V-HICKTRD-------------------------------------AYEAAV-------- 175
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG 646
Q K A L+ + + E+ GV+ + + V+ + + + K++ GTG
Sbjct: 176 -QDAAKYAGTLLVEQFVKGREVQGGVLD-----DEALGVIEVRAAREFYDYDAKYKAGTG 229
Query: 647 IN-LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
L P P + + + + AL G SR D V D GEV ++E NT+PG
Sbjct: 230 TQYLFPAP---LPPDQYARVNEVCLAAHQALGCSGGSRSDVIVT-DGGEVFLLETNTLPG 285
Query: 706 MTPSTVL 712
MT +++L
Sbjct: 286 MTATSLL 292
>gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
Length = 305
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 120/287 (41%), Gaps = 64/287 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V+I +HG GEDG +Q+LL+ + Y G GV S MDK + L G +
Sbjct: 56 VYIGLHGRYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFERE---GTRIAKQ 112
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
V K + T+ ++ + VKP ++G + G+ AE+ E
Sbjct: 113 HVLYKHS---------YDPETTAIEIPFPVVVKPNQEGSTIGI---TFAEN--------E 152
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E LL N A + E ++ E F+ KG
Sbjct: 153 EELL----NGIEEAFKL-------DETVLLEEFI---------------------KGR-- 178
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E+TV V+G G +L P V + E K+ G ++ P + +++E D
Sbjct: 179 --EVTVAVMGNKGREKAL-PVVEIVPKNKYYDYEAKYAAGMSEHIVP---ARLTSEQTDY 232
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
++ L AL + +SR+D V D G +I+EVNT+PGMTP+++
Sbjct: 233 VQKHAVLAHQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSL 279
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 50/209 (23%)
Query: 40 VVVKPTRAGSSIGVTVAY-------GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA 92
VVVKP + GS+IG+T A G+ ++ K +D+ V++E F++ G E T
Sbjct: 133 VVVKPNQEGSTIGITFAENEEELLNGIEEAFK---------LDETVLLEEFIK-GREVTV 182
Query: 93 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPI 152
V+ PV V++ K+ ++Y KY + P R
Sbjct: 183 AVMGNKGREKALPV--------------VEIVPKNKYYDYEAKYAAGMS-EHIVPARLTS 227
Query: 153 VVINSIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 211
+ +++ A L Q LG CD ++R+D + +P + G + ++N
Sbjct: 228 EQTDYVQKHAVLAHQALG-CDIYSRVD-FIVPD---------------DGGAPVILEVNT 270
Query: 212 ISGMEQTSFLFQQASKVGFSHSNILRTII 240
+ GM TS A ++G S+ ++ T +
Sbjct: 271 LPGMTPTSLYPDAAREIGLSYDEMIETFV 299
>gi|160937585|ref|ZP_02084946.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
BAA-613]
gi|158439654|gb|EDP17404.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
BAA-613]
Length = 372
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 131/317 (41%), Gaps = 63/317 (19%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV++S MDK+ T + ++ DLGV
Sbjct: 116 VFPVLHGLYGEDGTIQGLLELAKIPYVGCGVLSSAVSMDKLYTKIIVD---DLGVRQAAY 172
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ +E L+ V E K + +KP+ G S GV + A+D +ALE
Sbjct: 173 EAVYREQLVHMESV---VERVEKHFSYPVFIKPSNAGSSRGVTK---ADDR----QALEA 222
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
G+ E +IL+ E +
Sbjct: 223 --------------GLSEAARHDRKILVEETIIGR------------------------- 243
Query: 606 VEITVGVIGKCGSMHSLMPSVT--VKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
EI V G G + ++ S + + + E K+ +T P + A +
Sbjct: 244 -EIECAVFG--GGLKEVVASGVGEILAAAEFYDFEAKYYNEESRTVTDPE---LPAGAAE 297
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+ +Q I A+ G +R+D FV D+GEV+ E+NT+PG T + ++ L E +
Sbjct: 298 RVRQAAMDIFRAVDGYGLARVDFFVK-DDGEVVFNEINTMPGFT--AISMYPMLWEARGI 354
Query: 724 YPHQFFRKVLDLGSERF 740
Q ++ G ER+
Sbjct: 355 TKDQLVDMLMAHGMERY 371
>gi|312135724|ref|YP_004003062.1| d-alanine/d-alanine ligase [Caldicellulosiruptor owensensis OL]
gi|311775775|gb|ADQ05262.1| D-alanine/D-alanine ligase [Caldicellulosiruptor owensensis OL]
Length = 364
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 131/343 (38%), Gaps = 99/343 (28%)
Query: 420 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 472
K+N+AT +F +HG GEDGT+Q LLE +PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVIFPVLHGLNGEDGTVQGLLELSDIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 473 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLV---------------------------------LAIHEAFLYDTK 215
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 636
IL Q+ N EI V+G V V E G+I+ S
Sbjct: 216 ILI-EQAINAR-------------EIECAVLGN--------DEVFVSEPGEIIPSREFYS 253
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ + + P TE + RI I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDNSSELIIPARLPKEVTEEIKDLAVRIYKI---FECCGMARVDFFVDKDTNKVY 310
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVNT+PG T + ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--NISMYPKLMEFSGISYSQLIDKLISLAIEK 351
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 35/221 (15%)
Query: 26 NWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 85
++F+ S V VKP +GSS+G++ A D + L D ++++E +
Sbjct: 166 DYFIRRIESEFSYPVFVKPANSGSSVGISKAKDREDLVLAIHEAFL--YDTKILIEQAI- 222
Query: 86 GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 145
E VL F P ++P+ RE ++Y KY+
Sbjct: 223 NAREIECAVLGNDEVFVSEPGEIIPS------------RE---FYSYEAKYIDNSS-ELI 266
Query: 146 TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL 205
P R P V I++ A +++ C AR+D +F+ T+ +
Sbjct: 267 IPARLPKEVTEEIKDLAVRIYKIFECCGMARVD-FFVDKDTN---------------KVY 310
Query: 206 FTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
F ++N I G S + G S+S ++ +I A +
Sbjct: 311 FNEVNTIPGFTNISMYPKLMEFSGISYSQLIDKLISLAIEK 351
>gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
Length = 368
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 130/317 (41%), Gaps = 66/317 (20%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 482
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L LA +T
Sbjct: 101 VVFPIVHGTLGEDGSLQGLLRMANLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R K D + +L+ +L L VKPA G S GV+R+ +D Y A
Sbjct: 161 LTRANRNKYD---------FAQLSERLGL-PLFVKPANQGSSVGVSRV---QDRQQYEAA 207
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+ +FS H ++L S +
Sbjct: 208 V--------ALAFSFDH----------------------KVLVESAIVGR---------- 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S+ + + + + S + K+ G + P A +S A
Sbjct: 228 ----EIECAVLGNDQPQASVCGEIVLND--EFYSYDTKYINEQGAQVVVPAA--ISEAAS 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
DK +Q AL G +R+D F+ D+ V+I E+NT+PG T + ++ L
Sbjct: 280 DKIRQVALKAFRALDCLGMARVDVFLTADD-NVIINEINTLPGFT--NISMYPKLWAASG 336
Query: 723 MYPHQFFRKVLDLGSER 739
+ Q ++++L ER
Sbjct: 337 VDYRQLITRLIELALER 353
>gi|148657890|ref|YP_001278095.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
gi|148570000|gb|ABQ92145.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
Length = 370
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 61/315 (19%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F +HG +GEDGT+Q LLE GVPY G GV+AS MDK T +A + A L VL
Sbjct: 110 IFPVLHGPMGEDGTVQGLLELIGVPYVGCGVLASAVGMDKAMTKVAFSG-AGLPVLPWLL 168
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
RR+ + ++D W E S+L + VKPA G S GV+++ D + + E
Sbjct: 169 VRRREWEHEPQRVLD-WIE--SRLHYP-MFVKPANLGSSVGVSKVT---DRATLEQGIAE 221
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
S+ R +I E + EI S +
Sbjct: 222 A------ASYDRR-------------IIVEQGIPAREIEVSVLGND-------------- 248
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI-MSTEALDK 664
E V G+ V SG+ K+ G+ L P P ++ ++ +
Sbjct: 249 -EPEASVPGE------------VIPSGEWYDYAAKYLSGSSQILIPAPITLELAAQVRTL 295
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
Q + I A G +R+D +N + G++ + E+NT+PG TP ++ + P Y
Sbjct: 296 AVQAFKAIDGA----GLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWDASGLP-Y 350
Query: 725 PHQFFRKVLDLGSER 739
H +++DL ER
Sbjct: 351 TH-LLDRLIDLALER 364
>gi|366159464|ref|ZP_09459326.1| D-alanine--D-alanine ligase [Escherichia sp. TW09308]
gi|432375017|ref|ZP_19618040.1| D-alanine-D-alanine ligase B [Escherichia coli KTE11]
gi|430892275|gb|ELC14767.1| D-alanine-D-alanine ligase B [Escherichia coli KTE11]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L L VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLP-LIVKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
+ Q ++L+L
Sbjct: 291 GLSFSQLVVRILEL 304
>gi|183599899|ref|ZP_02961392.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827]
gi|386742166|ref|YP_006215345.1| D-alanine--D-alanine ligase [Providencia stuartii MRSN 2154]
gi|188022174|gb|EDU60214.1| D-ala D-ala ligase N-terminal domain protein [Providencia stuartii
ATCC 25827]
gi|384478859|gb|AFH92654.1| D-alanine--D-alanine ligase [Providencia stuartii MRSN 2154]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 129/313 (41%), Gaps = 69/313 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGT+Q +LE G+PYTG GVMAS MDK+ T L A L V
Sbjct: 58 VFIALHGRGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTK-QLWEGAGLAVSPYVS 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ + LKT ++ EL + L L VKP+ +G S G++++ DL+ +
Sbjct: 117 LSKFEFSSLKTEKIE---ELVAYLGLP-LIVKPSLEGSSVGMSKVDNLGDLSAALA---- 168
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L F F ET I +W
Sbjct: 169 --------------------------LAFR-FDETVLI-------------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV V+G+ +PS+ ++ G E K+ P S L
Sbjct: 183 LSGPEYTVAVLGE-----QTLPSIRIQPPGVFYDYEAKYLSDETQYFCPSGLDAGSEAQL 237
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ R A+ G+ R+D + D G+ ++EVNT PGMT +++ A Q
Sbjct: 238 SQLAMR---AYQAVGCRGWGRVDVMQDSD-GQFYLLEVNTSPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 292 MDFSQLVVRILEL 304
>gi|257126515|ref|YP_003164629.1| D-alanine--D-alanine ligase [Leptotrichia buccalis C-1013-b]
gi|257050454|gb|ACV39638.1| D-alanine/D-alanine ligase [Leptotrichia buccalis C-1013-b]
Length = 308
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 133/300 (44%), Gaps = 74/300 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
K+ + N V+IA+HG GEDG +Q++L++ GV Y+GPGVM+S CMDK + +A
Sbjct: 52 KVKELNLDFVYIALHGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDK---EFSKRIVA 108
Query: 477 DLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
GV K VR E VD E K + VKP G S GV+ + E+
Sbjct: 109 GYGVRIAKWKSVRVGE------TVDF--ETIKKELGNRVVVKPNSGGSSIGVSFVENQEE 160
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L K LE GM E LI +E+L
Sbjct: 161 LE---KGLELVF------------GM------DKEALI-------EEVL----------- 181
Query: 596 RLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKE-SGDILSLEEKF-QGGTGINLTPP 652
VEI+V VI GK + P++ ++ +GD E K+ +GG +
Sbjct: 182 --------HGVEISVPVIDGK------VFPTIRIEALAGDYFDYESKYAKGGANEYVFEF 227
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
P + + ++K + L+ EGF+RID F+ V+ +EVNT PGMT +++L
Sbjct: 228 PEEVQAE--INKFAKDSYY---GLKCEGFARID-FMVVNEETPYFMEVNTSPGMTSASLL 281
>gi|238754436|ref|ZP_04615791.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
gi|238707265|gb|EEP99627.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
Length = 289
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 127/313 (40%), Gaps = 69/313 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGTLQ +L+ +PYTG GVMAS MDK+ + L L ++
Sbjct: 41 AFIALHGRGGEDGTLQGVLDFLQLPYTGSGVMASALTMDKLRSKLVWQASG----LPVSP 96
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ +T + +KL L VKP+R+G S G++++ A +L ++
Sbjct: 97 FIALSRQQFETLSSGDFAAGIAKLGLP-LIVKPSREGSSVGMSKVNHASELNAALQ---- 151
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
E F ++IL +W
Sbjct: 152 -----------------------------EAFRHDNDILI-----------------EKW 165
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G ++PS+ ++ +G E K+ T P S + +
Sbjct: 166 LSGPEFTVAMLGD-----EVLPSIRIQPTGVFYDYEAKYLSDTKQYFCP---SGLGEQQE 217
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ + AL G+ R+D + D G ++EVNT PGMT +++ A +Q
Sbjct: 218 QQLAELARQAYQALGCSGWGRVDVMQDGDGG-FYLLEVNTSPGMTSHSLVPMAA--KQAG 274
Query: 723 MYPHQFFRKVLDL 735
M Q ++L L
Sbjct: 275 MSFSQLVTRILAL 287
>gi|417705587|ref|ZP_12354662.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6]
gi|420329062|ref|ZP_14830780.1| D-alanine--D-alanine ligase B [Shigella flexneri K-1770]
gi|333010588|gb|EGK30021.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6]
gi|391261900|gb|EIQ20945.1| D-alanine--D-alanine ligase B [Shigella flexneri K-1770]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLKASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|15605989|ref|NP_213366.1| D-alanine--D-alanine ligase [Aquifex aeolicus VF5]
gi|6225246|sp|O66806.1|DDL_AQUAE RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|2983164|gb|AAC06765.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5]
Length = 291
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 131/315 (41%), Gaps = 83/315 (26%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
D+ ELP KL + VFIA+HG GEDGT+Q LLE +PYTG +AS
Sbjct: 38 LDLDKELP--------CKLLEIKPDKVFIALHGRYGEDGTVQGLLEILDIPYTGSDTIAS 89
Query: 460 KTCMDKVATSLALNHLADLGVLTINKDVRRKE-DLLKTPIVDIWHELTSKLQCKTLCVKP 518
+DK T + LG+ T + + E D+L T W++ + VKP
Sbjct: 90 AVSIDKDFTKRIVKS---LGINTPDWETFISEGDVLNTE----WNKFPA-------VVKP 135
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
R+G S G+ + E+L Y AL+ LL+ E ++ E FV
Sbjct: 136 VREGSSVGLKIVESLEELKEY--ALD--LLK------------------KTERVMVEEFV 173
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
E ++TVG++ +P V + + E
Sbjct: 174 EGR-------------------------DMTVGILK-----GEALPVVEIIPKKGVYDYE 203
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGEVLI 697
K+ G I+ E L K Q I L I+ L L+ F+RID F G++
Sbjct: 204 CKYTKGMS------EYRILKDEKLSKKLQEISLKISKFLSLKDFARID-FRVTKEGKIFF 256
Query: 698 IEVNTVPGMTPSTVL 712
+EVNT+PGMT ++L
Sbjct: 257 LEVNTIPGMTELSLL 271
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 45/207 (21%)
Query: 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID--DRVVVELFLEGGSEFTAI 93
N VVKP R GSS+G+ +++SL++ K L+ + +RV+VE F+EG I
Sbjct: 127 NKFPAVVKPVREGSSVGLK----IVESLEELKEYALDLLKKTERVMVEEFVEGRDMTVGI 182
Query: 94 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
+ + PV V++ K +++Y KY T+ ++ + + +
Sbjct: 183 LKG-----EALPV--------------VEIIPKKGVYDYECKY--TKGMSEYRILKDEKL 221
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 213
++E + + + L L DFARID + T+ G I F ++N I
Sbjct: 222 S-KKLQEISLKISKFLSLKDFARID-----------------FRVTKEGKIFFLEVNTIP 263
Query: 214 GMEQTSFLFQQASKVGFSHSNILRTII 240
GM + S L A + G ++ II
Sbjct: 264 GMTELSLLPMAAKEKGMDFKKLISIII 290
>gi|402306603|ref|ZP_10825644.1| D-ala D-ala ligase N-terminal domain protein [Haemophilus sputorum
HK 2154]
gi|400374558|gb|EJP27475.1| D-ala D-ala ligase N-terminal domain protein [Haemophilus sputorum
HK 2154]
Length = 303
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 126/321 (39%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T V +K + + E+ +KL VKP+ +G S GV ++ +L
Sbjct: 110 -VGLPTAEMVVIKKGQAVNS------SEIIAKLGLPVF-VKPSSEGSSVGVFKVKTEAEL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
++A L F+ V +E L ++ + D
Sbjct: 162 QPAIQAA----------------------------LKFDNIVLVEEFLAGAEYSVPVLD- 192
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
++P+V V G+ K+ + P +
Sbjct: 193 -----------------------GEVLPAVQVIPEGEFYDYHAKYISDNTQYVVPALSDE 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E KQ +++ G+SRID + NG+ ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAKIVKQAFDVVG----CRGWSRIDVMEDA-NGQFRLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ Q KVL+L +
Sbjct: 285 --NTVGLSFEQLVEKVLELSA 303
>gi|418252786|ref|ZP_12878253.1| D-alanine--D-alanine ligase [Shigella flexneri 6603-63]
gi|420366668|ref|ZP_14867502.1| D-alanine--D-alanine ligase B [Shigella flexneri 1235-66]
gi|391324023|gb|EIQ80637.1| D-alanine--D-alanine ligase B [Shigella flexneri 1235-66]
gi|397902054|gb|EJL18386.1| D-alanine--D-alanine ligase [Shigella flexneri 6603-63]
Length = 306
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 135/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L +
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAG----LPVAP 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 114 WVALTRSEFEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|337278604|ref|YP_004618075.1| D-alanine-D-alanine ligase [Ramlibacter tataouinensis TTB310]
gi|334729680|gb|AEG92056.1| Candidate D-alanine-D-alanine ligase [Ramlibacter tataouinensis
TTB310]
Length = 323
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 126/321 (39%), Gaps = 68/321 (21%)
Query: 390 GLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGV 449
G+ K G D P + ++E L +E FIA+HG GEDGT+Q LE G+
Sbjct: 30 GVLKALQAKGVDAHAFDPAQRDLSE---LKREGFGRCFIALHGRFGEDGTVQGALELLGI 86
Query: 450 PYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKL 509
PYTG GVMAS +DKV T LA+ G+ T + R+ + +V I EL
Sbjct: 87 PYTGSGVMASSIAIDKVMTKRVW--LAE-GIPTPKYRLLRRGAYQRGQVVRIPDELG--- 140
Query: 510 QCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
L VKPAR+G S GVA++ +S G ++
Sbjct: 141 --LPLIVKPAREGSSIGVAKV----------------------QGYSEMQGAVDAAAALD 176
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
++ E FV D E+T ++G G +P + +
Sbjct: 177 ADVLCEQFVSGD-------------------------EVTCPILGT-GDAARALPVIRIV 210
Query: 630 ESGDILSLEEKFQGGTGINLTP---PPASIMSTEALDKCKQRIELIANALQLEGFSRIDA 686
+ K+ L P P + +AL R+ L G+ RID
Sbjct: 211 APAGNYDYQNKYFTDDTQYLVPCGLPAGEEAAIQALVLKAYRV------LGCRGWGRIDV 264
Query: 687 FVNVDNGEVLIIEVNTVPGMT 707
++ + ++E+NT PGMT
Sbjct: 265 MIDGRTRQPSLLEINTSPGMT 285
>gi|392968035|ref|ZP_10333451.1| D-alanine--D-alanine ligase domain protein [Fibrisoma limi BUZ 3]
gi|387842397|emb|CCH55505.1| D-alanine--D-alanine ligase domain protein [Fibrisoma limi BUZ 3]
Length = 571
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 141/325 (43%), Gaps = 50/325 (15%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 483
F+A+HG EDG +Q LLE +PYTGPG++ S ++K+ + +AL + TI
Sbjct: 124 AFLAMHGPDCEDGAIQGLLEWYKMPYTGPGLVGSAIGINKILQNELIALANGQQKKTATI 183
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
N+D + D + + L L + VK G S GVA + DL ++ +++
Sbjct: 184 NRDAWERADKAQ-----FFQSLIDHLGL-PIVVKAPHQGSSIGVA-IVREPDLALFCRSV 236
Query: 544 EECL--LRIPPNSFSR---------------AHGMIEMPNPPPEILIFEPFVETDEILFS 586
E+C + + P+ FS+ A M+ + + ++ E +T E++
Sbjct: 237 EQCFFTMSVQPDGFSKLSEWGELSADEKRELAQTMVSLDSGISFPVVIE---QTGEVIRH 293
Query: 587 SQS---------------TNKNA-DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 630
Q+ + NA D ++++ E + GVI +P +
Sbjct: 294 PQTLIDKLDSMQGQPLTLASVNAEDDVLFEEFISGQEFSCGVIQDDDGRAIALPPTEIYN 353
Query: 631 SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV 690
E K++ T P S+ + K + + + L + ++RID F+
Sbjct: 354 VTS-FDFESKYKLNTTKKRIPVATSLENNR---KIQLAVAEVFTKLGINVYARIDGFLTP 409
Query: 691 DNGEVLIIEVNTVPGMTPSTVLIHQ 715
D VL+ + NT+PGM+PS+++ Q
Sbjct: 410 DE-RVLLHDPNTIPGMSPSSLIFKQ 433
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 47/191 (24%)
Query: 59 VIDSLKKAKGIILE----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVE 114
+ID L +G L +D V+ E F+ G EF+ V+ G + L PTE+
Sbjct: 297 LIDKLDSMQGQPLTLASVNAEDDVLFEEFI-SGQEFSCGVIQDDDG---RAIALPPTEIY 352
Query: 115 LQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVI----NSIREGASLLFQRL 169
F++ KY L T T R P+ I+ + +F +L
Sbjct: 353 -----------NVTSFDFESKYKLNT------TKKRIPVATSLENNRKIQLAVAEVFTKL 395
Query: 170 GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVG 229
G+ +ARIDG+ P +L D N I GM +S +F+Q +++G
Sbjct: 396 GINVYARIDGFLTPDER-----------------VLLHDPNTIPGMSPSSLIFKQMAEIG 438
Query: 230 FSHSNILRTII 240
+ +N L +I
Sbjct: 439 LNLTNSLTYLI 449
>gi|415725835|ref|ZP_11470386.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 00703Dmash]
gi|388064171|gb|EIK86734.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 00703Dmash]
Length = 380
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 129/308 (41%), Gaps = 62/308 (20%)
Query: 418 LAKENQAT---------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
LA+EN T VF +HG GEDGTLQ LLE VPY G GV+AS CMDK
Sbjct: 90 LARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKY-Y 148
Query: 469 SLALNHLADLGVL-TINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----LCVKPARDGC 523
+ L A + V I D R+ + +E+ ++++ L VKP+R G
Sbjct: 149 AKQLFKAAGINVAPGIALDARKFASDAENRFDSYANEILAQVEAAKLEYPLFVKPSRAGS 208
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S GV ++ + KAL E + + + ++ E ++ EI
Sbjct: 209 SFGVTKVESRD-----AKALAEAIFEASEHDWR---------------VLVEQGIDAREI 248
Query: 584 LFSSQSTNKNAD-RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEK 640
+ + + + W G V+ K +E+G+ + K
Sbjct: 249 ECAVLAARDGEEPKASWPGEV--------VLDK-------------REAGEDQFYDFDSK 287
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ ++ P + + E L++ ++ A G SR+D+FV D G V++ E+
Sbjct: 288 YMDSAASHVEVP--ANLPAETLERVRKTALAAFKAADGRGLSRVDSFVTKD-GRVILNEI 344
Query: 701 NTVPGMTP 708
NT+PG TP
Sbjct: 345 NTMPGFTP 352
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 30/202 (14%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD-RVVVELFLEGGSEFTAIVLDVGSG 100
VKP+RAGSS GVT D+ A+ I D RV+VE ++ E VL G
Sbjct: 201 VKPSRAGSSFGVTKVESR-DAKALAEAIFEASEHDWRVLVEQGID-AREIECAVLAARDG 258
Query: 101 FDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ P P EV L D RE +D +++ KY+ + P P + +
Sbjct: 259 EE--PKASWPGEVVL------DKREAGEDQFYDFDSKYMDSAASHVEVPANLPAETLERV 310
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R+ A F+ +R+D + T+ G ++ +IN + G
Sbjct: 311 RKTALAAFKAADGRGLSRVDSFV-----------------TKDGRVILNEINTMPGFTPI 353
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + G S+S+++ +I
Sbjct: 354 SMYPKAWEATGISYSDLITKLI 375
>gi|78188875|ref|YP_379213.1| D-alanyl-alanine synthetase A [Chlorobium chlorochromatii CaD3]
gi|123579964|sp|Q3AS55.1|DDL_CHLCH RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|78171074|gb|ABB28170.1| D-alanine--D-alanine ligase [Chlorobium chlorochromatii CaD3]
Length = 360
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 129/320 (40%), Gaps = 75/320 (23%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F+A+HG GEDG +Q LE G+PYTG GV+AS MDK T L +AD G+
Sbjct: 104 FLALHGSFGEDGRMQGFLETCGIPYTGCGVLASALTMDKALTKLC---VADAGIAVAQGT 160
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
D L P + + + ++ + L VKPA G S G++++ E+L ++A
Sbjct: 161 NILSADYLANP-----NAVEASVEAQVSYPLFVKPASLGSSIGISKVHNREELHPALQA- 214
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK--- 600
A L WK
Sbjct: 215 --------------------------------------------------ACALDWKVVV 224
Query: 601 -GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+ EI V V+G + S+ ++ + ++K+ G + PA I
Sbjct: 225 ESTVKGREIEVAVLGNADPIASVCGE--IEPGKEFYDFQDKYMGNSAKLFI--PARI--P 278
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
E+L + +R L A AL G +R+D FV+ V++ EVNT+PG T + ++ +
Sbjct: 279 ESLQEEVRRSALTAYRALGCSGMARVDFFVDESTNSVVLNEVNTIPGFT--DISMYPQMM 336
Query: 719 EQPPMYPHQFFRKVLDLGSE 738
E + ++L+L E
Sbjct: 337 EASGISYRNLITRLLELALE 356
>gi|121535915|ref|ZP_01667711.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
gi|121305486|gb|EAX46432.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
Length = 316
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 62/299 (20%)
Query: 415 WIKLAKENQAT-VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN 473
+++ +EN T VF A+HG GEDG LQ L+ G+PYTG GV+AS MDK S++
Sbjct: 48 FLEQLRENGVTFVFNAIHGKFGEDGALQGALDLLGIPYTGSGVLASALAMDK---SISKR 104
Query: 474 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
G+ T ++ K D + + +I + L VK A G S GV +
Sbjct: 105 LFQAAGIPTPRAEIYTKADAKRNLVAEIMQKFPI-----PLVVKAAAQGSSIGV--VIVE 157
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
E+ V + + E F +D I+ +
Sbjct: 158 EESQV-------------------------------QAAVVEAFRYSDCIVVEN------ 180
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
KG E+TV ++G G ++P + + K+ GT + P
Sbjct: 181 ----FIKGK----ELTVAILG--GEPLEVLPIIEIVPHSGRYDYHSKYTKGTTDYIIP-- 228
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + A ++ +Q N L G +R+D ++ DN ++EVNT+PGMT ++++
Sbjct: 229 -ARIDDNAAERVRQVAVAAFNLLGCRGVARVDIMLDDDNNP-YVLEVNTIPGMTATSLV 285
>gi|432677672|ref|ZP_19913103.1| D-alanine-D-alanine ligase B [Escherichia coli KTE142]
gi|431208096|gb|ELF06319.1| D-alanine-D-alanine ligase B [Escherichia coli KTE142]
Length = 306
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRLLEL 304
>gi|395236433|ref|ZP_10414628.1| D-alanine--D-alanine ligase [Enterobacter sp. Ag1]
gi|394728860|gb|EJF28895.1| D-alanine--D-alanine ligase [Enterobacter sp. Ag1]
Length = 306
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 157/359 (43%), Gaps = 90/359 (25%)
Query: 387 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 446
++ GLK+ G D P S+ ++L + VFIA+HG GEDGTLQ LLE
Sbjct: 26 VLAGLKE----AGIDAHAFDPQSESV---LELKAQGFDKVFIALHGRGGEDGTLQGLLEF 78
Query: 447 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LTINKDVRRKEDLLKTPIVDIWH 503
+PYTG GVMAS MDK+ + L L A L V + +N ++D +
Sbjct: 79 LQLPYTGSGVMASAITMDKLRSKL-LWQGAGLPVAPWVAVN-----RQDFAAGLSAALVE 132
Query: 504 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 563
+T+ + VKP+R+G S G++++ + + V ALE
Sbjct: 133 RVTAL--GLPVIVKPSREGSSVGMSKV---DSVDVLPAALE------------------- 168
Query: 564 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMH 620
L FE +E+L +W+ E TV ++G+
Sbjct: 169 --------LAFE---HDEEVLI-----------------EKWLSGPEYTVAILGE----- 195
Query: 621 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIE-LIANALQL- 678
++PS+ ++ +G E K+ L+ +++ +Q ++ L+ A Q+
Sbjct: 196 EILPSIRIQPAGTFYDYEAKY-------LSDETQYFCPGGLIEQREQELQALVLQAWQIL 248
Query: 679 --EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
G+ R+D ++ D G+ ++EVNT PGMT +++ A Q M Q ++L+L
Sbjct: 249 GCSGWGRVDVMLDSD-GQFYLLEVNTSPGMTSHSLVPMAA--RQAGMSFSQLVVRILEL 304
>gi|423118647|ref|ZP_17106331.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5246]
gi|376400713|gb|EHT13324.1| D-alanine-D-alanine ligase B [Klebsiella oxytoca 10-5246]
Length = 306
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 135/327 (41%), Gaps = 99/327 (30%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV-----L 481
FIA+HG GEDGTLQ LLE +PYTG GVMAS MDKV + L L A L V L
Sbjct: 59 FIALHGRGGEDGTLQGLLELIQLPYTGSGVMASAISMDKVRSKL-LWQGAGLPVAPWVAL 117
Query: 482 T-------INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
T ++ +V ++ L P++ VKPA +G S G++++
Sbjct: 118 TRAQFNAGLSAEVEQQIAALGLPLI----------------VKPACEGSSVGMSKVS--- 158
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
E C L N+ + A F +++L
Sbjct: 159 ---------ESCALH---NALALA------------------FQHDEDVLI--------- 179
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+W+ E TV ++G+ ++PS+ ++ +G E K+ P
Sbjct: 180 --------EKWLSGPEFTVAIVGE-----EILPSIRIQVAGTFYDYEAKYLSDETQYFCP 226
Query: 652 ---PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
PA +AL + N L +G+ RID ++ D G+ ++E NT PGMT
Sbjct: 227 GCEDPARESEIQAL------VVKAWNVLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTS 279
Query: 709 STVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q M Q ++LDL
Sbjct: 280 HSLVPMAA--RQAGMSFSQLVVRILDL 304
>gi|410637814|ref|ZP_11348384.1| D-alanine-D-alanine ligase [Glaciecola lipolytica E3]
gi|410142500|dbj|GAC15589.1| D-alanine-D-alanine ligase [Glaciecola lipolytica E3]
Length = 315
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 119/314 (37%), Gaps = 83/314 (26%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P H+I + I+L A V I +HG GEDG++Q L+ +PYTG GV+ S MDK+
Sbjct: 52 PSEHAITQLIELGF---ARVLIMLHGRGGEDGSMQGALQVLNLPYTGSGVLGSALAMDKI 108
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
T LG+ T N + K I HEL T+ VKPA++G S G
Sbjct: 109 KTKQIWQ---TLGLPTANYQIAEKSSFEAGSCRVIMHEL-----GDTVMVKPAQEGSSIG 160
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
+ ++ A L E I + F + +L
Sbjct: 161 MTKVTNATQL---------------------------------ETAIQDAFKYDNTVLL- 186
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
+R + E TV ++ GK +PS+ + K+ T
Sbjct: 187 --------ERFI-----HGPEYTVSILNGKA------LPSIRMSTPHTFYDYNAKYHSNT 227
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA-------FVNVDNGEVLII 698
P SI L AL LE F+ +D F+ +G+ ++
Sbjct: 228 TEYFCPSGLSIEDENKL-----------GALALEAFTAVDGSGWGRVDFMRDQSGQFYLL 276
Query: 699 EVNTVPGMTPSTVL 712
E NTVPGMT +++
Sbjct: 277 EANTVPGMTEKSLV 290
>gi|392546790|ref|ZP_10293927.1| D-alanine-D-alanine ligase B [Pseudoalteromonas rubra ATCC 29570]
Length = 302
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 116/294 (39%), Gaps = 81/294 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGT+Q LE G+PYTG GV+ S MDK+
Sbjct: 60 VFIALHGRGGEDGTVQGALEFMGLPYTGSGVLGSALAMDKIRCKQLFES----------- 108
Query: 486 DVRRKEDLLKTPIVDIWHEL-TSKLQCK--TLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
K + +V E+ T+ L K + VKP+ +G S G+ + A++L A
Sbjct: 109 ---AKLSTARYCVVKAEQEIDTTALMAKFGKVMVKPSHEGSSIGMTQAASAQELQ---DA 162
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L E F DEIL
Sbjct: 163 LNEA------------------------------FKYDDEILI----------------- 175
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ +P + ++ + K+Q + P + T
Sbjct: 176 EQWIDGREFTVAMLGE-----EALPVIEMRTPRGFYDYQAKYQVNSTEYYCPADINTAYT 230
Query: 660 EALD-KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
E L K EL+ G+ R+DA + NG+ ++EVNTVPGMT +++
Sbjct: 231 EQLQVMAKHAFELVGAT----GWGRVDAMQD-GNGQFYLLEVNTVPGMTEKSLV 279
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 88/214 (41%), Gaps = 45/214 (21%)
Query: 30 TNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEG 86
T L GKV+VKP+ GSSIG+T A + D+L +A DD +++E +++
Sbjct: 127 TTALMAKFGKVMVKPSHEGSSIGMTQAASAQELQDALNEAF-----KYDDEILIEQWID- 180
Query: 87 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 146
G EFT +L G + PV +++R ++Y+ KY Y+
Sbjct: 181 GREFTVAML----GEEALPV--------------IEMRTPRGFYDYQAKY-QVNSTEYYC 221
Query: 147 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 206
P ++ A F+ +G + R+D + G+ G
Sbjct: 222 PADINTAYTEQLQVMAKHAFELVGATGWGRVDA--------------MQDGN---GQFYL 264
Query: 207 TDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
++N + GM + S + A + G S ++ I+
Sbjct: 265 LEVNTVPGMTEKSLVPMAAKQNGLSFKQLVIRIL 298
>gi|91209156|ref|YP_539142.1| D-alanine--D-alanine ligase [Escherichia coli UTI89]
gi|117622378|ref|YP_851291.1| D-alanine--D-alanine ligase [Escherichia coli APEC O1]
gi|218557032|ref|YP_002389945.1| D-alanine--D-alanine ligase [Escherichia coli S88]
gi|237704241|ref|ZP_04534722.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
gi|386597842|ref|YP_006099348.1| D-alanine--D-alanine ligase [Escherichia coli IHE3034]
gi|386607182|ref|YP_006113482.1| D-alanine--D-alanine ligase [Escherichia coli UM146]
gi|417082334|ref|ZP_11950730.1| D-alanine--D-alanine ligase [Escherichia coli cloneA_i1]
gi|419942475|ref|ZP_14459078.1| D-alanine--D-alanine ligase [Escherichia coli HM605]
gi|422361019|ref|ZP_16441647.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
gi|422750521|ref|ZP_16804431.1| D-alanine-D-alanine ligase [Escherichia coli H252]
gi|422756428|ref|ZP_16810251.1| D-alanine-D-alanine ligase [Escherichia coli H263]
gi|422839926|ref|ZP_16887897.1| D-alanine-D-alanine ligase B [Escherichia coli H397]
gi|432356450|ref|ZP_19599698.1| D-alanine-D-alanine ligase B [Escherichia coli KTE4]
gi|432365949|ref|ZP_19609084.1| D-alanine-D-alanine ligase B [Escherichia coli KTE5]
gi|432571985|ref|ZP_19808479.1| D-alanine-D-alanine ligase B [Escherichia coli KTE55]
gi|432586421|ref|ZP_19822794.1| D-alanine-D-alanine ligase B [Escherichia coli KTE58]
gi|432595990|ref|ZP_19832280.1| D-alanine-D-alanine ligase B [Escherichia coli KTE62]
gi|432757606|ref|ZP_19992140.1| D-alanine-D-alanine ligase B [Escherichia coli KTE22]
gi|432776975|ref|ZP_20011231.1| D-alanine-D-alanine ligase B [Escherichia coli KTE59]
gi|432790675|ref|ZP_20024796.1| D-alanine-D-alanine ligase B [Escherichia coli KTE65]
gi|432819442|ref|ZP_20053157.1| D-alanine-D-alanine ligase B [Escherichia coli KTE118]
gi|432825571|ref|ZP_20059228.1| D-alanine-D-alanine ligase B [Escherichia coli KTE123]
gi|433003632|ref|ZP_20192071.1| D-alanine-D-alanine ligase B [Escherichia coli KTE227]
gi|433010840|ref|ZP_20199245.1| D-alanine-D-alanine ligase B [Escherichia coli KTE229]
gi|433152226|ref|ZP_20337201.1| D-alanine-D-alanine ligase B [Escherichia coli KTE176]
gi|433161873|ref|ZP_20346643.1| D-alanine-D-alanine ligase B [Escherichia coli KTE179]
gi|433166808|ref|ZP_20351494.1| D-alanine-D-alanine ligase B [Escherichia coli KTE180]
gi|91070730|gb|ABE05611.1| D-alanine--D-alanine ligase B [Escherichia coli UTI89]
gi|115511502|gb|ABI99576.1| D-alanine--D-alanine ligase B [Escherichia coli APEC O1]
gi|218363801|emb|CAR01461.1| D-alanine:D-alanine ligase [Escherichia coli S88]
gi|226902153|gb|EEH88412.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
gi|294490795|gb|ADE89551.1| D-alanine--D-alanine ligase B [Escherichia coli IHE3034]
gi|307629666|gb|ADN73970.1| D-alanine--D-alanine ligase [Escherichia coli UM146]
gi|315285162|gb|EFU44607.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
gi|323950912|gb|EGB46789.1| D-alanine-D-alanine ligase [Escherichia coli H252]
gi|323955290|gb|EGB51063.1| D-alanine-D-alanine ligase [Escherichia coli H263]
gi|355353491|gb|EHG02656.1| D-alanine--D-alanine ligase [Escherichia coli cloneA_i1]
gi|371608410|gb|EHN96966.1| D-alanine-D-alanine ligase B [Escherichia coli H397]
gi|388423037|gb|EIL82586.1| D-alanine--D-alanine ligase [Escherichia coli HM605]
gi|430880041|gb|ELC03362.1| D-alanine-D-alanine ligase B [Escherichia coli KTE4]
gi|430881056|gb|ELC04318.1| D-alanine-D-alanine ligase B [Escherichia coli KTE5]
gi|431111712|gb|ELE15603.1| D-alanine-D-alanine ligase B [Escherichia coli KTE55]
gi|431124322|gb|ELE26968.1| D-alanine-D-alanine ligase B [Escherichia coli KTE58]
gi|431134586|gb|ELE36535.1| D-alanine-D-alanine ligase B [Escherichia coli KTE62]
gi|431297507|gb|ELF87157.1| D-alanine-D-alanine ligase B [Escherichia coli KTE22]
gi|431331609|gb|ELG18855.1| D-alanine-D-alanine ligase B [Escherichia coli KTE59]
gi|431333687|gb|ELG20872.1| D-alanine-D-alanine ligase B [Escherichia coli KTE65]
gi|431371201|gb|ELG56986.1| D-alanine-D-alanine ligase B [Escherichia coli KTE118]
gi|431374955|gb|ELG60299.1| D-alanine-D-alanine ligase B [Escherichia coli KTE123]
gi|431518583|gb|ELH96037.1| D-alanine-D-alanine ligase B [Escherichia coli KTE227]
gi|431519052|gb|ELH96504.1| D-alanine-D-alanine ligase B [Escherichia coli KTE229]
gi|431679192|gb|ELJ45106.1| D-alanine-D-alanine ligase B [Escherichia coli KTE176]
gi|431693264|gb|ELJ58680.1| D-alanine-D-alanine ligase B [Escherichia coli KTE179]
gi|431695073|gb|ELJ60409.1| D-alanine-D-alanine ligase B [Escherichia coli KTE180]
Length = 306
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E T+ ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTIAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|24111537|ref|NP_706047.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 301]
gi|110804156|ref|YP_687676.1| D-alanine--D-alanine ligase [Shigella flexneri 5 str. 8401]
gi|384541670|ref|YP_005725731.1| D-alanine--D-alanine ligase [Shigella flexneri 2002017]
gi|415859860|ref|ZP_11533973.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T]
gi|417700190|ref|ZP_12349338.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218]
gi|417710722|ref|ZP_12359732.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272]
gi|417715388|ref|ZP_12364326.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227]
gi|417720983|ref|ZP_12369838.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304]
gi|417726437|ref|ZP_12375187.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671]
gi|417731535|ref|ZP_12380210.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71]
gi|417736925|ref|ZP_12385538.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70]
gi|417741577|ref|ZP_12390134.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71]
gi|420318568|ref|ZP_14820428.1| D-alanine--D-alanine ligase B [Shigella flexneri 2850-71]
gi|420339562|ref|ZP_14841100.1| D-alanine--D-alanine ligase B [Shigella flexneri K-404]
gi|424836623|ref|ZP_18261260.1| D-alanine--D-alanine ligase [Shigella flexneri 5a str. M90T]
gi|39931097|sp|Q83MF7.1|DDLB_SHIFL RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|24050296|gb|AAN41754.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 301]
gi|110613704|gb|ABF02371.1| D-alanine-D-alanine ligase B [Shigella flexneri 5 str. 8401]
gi|281599454|gb|ADA72438.1| D-alanine--D-alanine ligase B [Shigella flexneri 2002017]
gi|313646525|gb|EFS10986.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T]
gi|332762094|gb|EGJ92363.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70]
gi|332762306|gb|EGJ92573.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71]
gi|332764938|gb|EGJ95166.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671]
gi|332768882|gb|EGJ99061.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71]
gi|333009448|gb|EGK28904.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218]
gi|333011480|gb|EGK30894.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272]
gi|333021723|gb|EGK40972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227]
gi|333022352|gb|EGK41590.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304]
gi|383465675|gb|EID60696.1| D-alanine--D-alanine ligase [Shigella flexneri 5a str. M90T]
gi|391255411|gb|EIQ14559.1| D-alanine--D-alanine ligase B [Shigella flexneri 2850-71]
gi|391275464|gb|EIQ34253.1| D-alanine--D-alanine ligase B [Shigella flexneri K-404]
Length = 306
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1]
gi|22095571|sp|Q9RXF1.1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1]
Length = 339
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 124/321 (38%), Gaps = 90/321 (28%)
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
A E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T L+ A +
Sbjct: 76 AAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTKQVLDS-AGI 134
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCC 532
+ VRR+ W + ++ + L VKPA G S G++++
Sbjct: 135 PQVAWRLAVRRE-----------WQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGS 183
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
E+L + + A G+ ++ + + +K
Sbjct: 184 PEELDA---------------ALTLAFGL------------------DRRVILEAMTPHK 210
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 651
E+ VG++G + S P + D E K+ G P
Sbjct: 211 PR------------EVEVGILGNDVPVAS--PVGELSFDADFYDYETKYTEGRAEMHIPA 256
Query: 652 --PP--ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
PP + + TEAL + AL G +R+D F + GE+ + EVNT+PG T
Sbjct: 257 RIPPEVSERIRTEALRAFR--------ALDCAGLARVDFFYVEETGELFLNEVNTMPGFT 308
Query: 708 PSTVLIHQALSEQPPMYPHQF 728
++ MYP F
Sbjct: 309 TTS------------MYPKLF 317
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 33/199 (16%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSS+G++ G + L A + G+D RV++E +V G
Sbjct: 167 VKPANLGSSVGIS-KVGSPEELDAALTLAF-GLDRRVILEAMTPHKPR------EVEVGI 218
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
+ V + EL F ++Y KY + H P R P V IR
Sbjct: 219 LGNDVPVASPVGELSFDAD--------FYDYETKYT-EGRAEMHIPARIPPEVSERIRTE 269
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A F+ L AR+D +++ E G + ++N + G TS
Sbjct: 270 ALRAFRALDCAGLARVDFFYV----------------EETGELFLNEVNTMPGFTTTSMY 313
Query: 222 FQQASKVGFSHSNILRTII 240
+ G S+S ++ ++
Sbjct: 314 PKLFEAAGLSYSELVTRLV 332
>gi|424938923|ref|ZP_18354686.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa NCMG1179]
gi|346055369|dbj|GAA15252.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa NCMG1179]
Length = 346
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/436 (25%), Positives = 167/436 (38%), Gaps = 134/436 (30%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG + ER VS+ SG V L++ + ++D +SG+ +
Sbjct: 7 KVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVL-------AVDTASGLLGAEEE---- 55
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
RH +LA+ ++ + PD + ++ + L G
Sbjct: 56 -------------RH----LLASKVKEVPPDSDSLA------IIRSGKQSLLSAGELAGV 92
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ F+A+HGG GEDGTLQ+LL+A G YTG G +AS
Sbjct: 93 DV-----------------------FFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASA 129
Query: 461 TCMDK-VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK VA L L GV T + L P + E + L VKP
Sbjct: 130 MAMDKDVAKRLFLAA----GVETAS--------WLMAPASE---EAVREQLGFPLVVKPN 174
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G + G S H E+ +P +E
Sbjct: 175 SQGSTVG----------------------------LSIVHSQAEL----------QPAIE 196
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLE 638
+ D +M + E+TVGV+ +P + G ++ E
Sbjct: 197 L---------AGRYGDEVMLERFVAGREVTVGVLDD-----QALPVGEILLGGQEVFDYE 242
Query: 639 EKFQGGTGINLTPPP-ASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGEVL 696
K+Q G + P A ++ EA QR+ L + AL+L G+SR D F + G +
Sbjct: 243 HKYQAGAVREVFPADLAPAIAAEA-----QRLALKVHRALKLSGYSRTD-FRLDEQGRLW 296
Query: 697 IIEVNTVPGMTPSTVL 712
+EVNT+PGMT +++L
Sbjct: 297 CLEVNTLPGMTATSLL 312
>gi|326802988|ref|YP_004320806.1| D-ala D-ala ligase N-terminal domain-containing protein, partial
[Aerococcus urinae ACS-120-V-Col10a]
gi|326650248|gb|AEA00431.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae
ACS-120-V-Col10a]
Length = 356
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 133/329 (40%), Gaps = 82/329 (24%)
Query: 423 QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT 482
+ F A+HG GEDG +Q L E+ VPY G GV++S MDK+
Sbjct: 89 EVIAFPALHGPHGEDGKIQGLFESLNVPYVGAGVLSSAAGMDKI---------------- 132
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC-----------VKPARDGCSTGVARLC 531
I+K + ++ + + P + H + + K+L VKPA G S G++
Sbjct: 133 ISKQLFQQAQIPQVPFTALTHYEWDQERAKSLTRIEGELVYPIFVKPANLGSSVGIS--- 189
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
CA D ++A+E ++ R +I E VE
Sbjct: 190 CANDREELIQAIELAF------NYDRR-------------VIVEQGVEAR---------- 220
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
E+ V V+G S+ V +S + EEK+ T + L
Sbjct: 221 ---------------EVEVAVLGNDAIETSVAGEVV--KSKSFYNYEEKYINNT-VELAI 262
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
P + + E +DK + A+ G +R+D FV N ++ I EVNT+PG T +
Sbjct: 263 P--ADLPGEIMDKIRAYAAKAYAAIDSSGLTRVDFFV-THNMDIYINEVNTMPGFTQWS- 318
Query: 712 LIHQALSEQPPMYPHQFFRKVLDLGSERF 740
++ +L E + Q +++ LG ERF
Sbjct: 319 -MYPSLWEATGIPYDQLLERLIQLGLERF 346
>gi|291615171|ref|YP_003525328.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
gi|291585283|gb|ADE12941.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
Length = 309
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 125/311 (40%), Gaps = 81/311 (26%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P + ++E L KE VFI +HG GEDGT+Q LE +PYTG GVMAS MDK
Sbjct: 49 PAQRDLSE---LKKEKFDRVFIILHGRYGEDGTVQGALELMDIPYTGSGVMASAIAMDKW 105
Query: 467 ATSLALNH----LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
T L + + LT D D L P L VKP+ +G
Sbjct: 106 RTKLVWQAAGLPIPEYEALTAPSDWNAVADHLDLP----------------LFVKPSSEG 149
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S GV ++ ++L P +++ A +++I E F+ E
Sbjct: 150 SSVGVTKVKTVDEL---------------PIAYAEAAKY-------DKVVIAESFMSGGE 187
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
+++ N A +P + ++ + + E K+
Sbjct: 188 --YTATILNGRA----------------------------LPVIKIEPANEFYDYEAKYL 217
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANAL-QLEGFSRIDAFVNVDNGEVLIIEVN 701
L P S+ + Q + L+A L +G+ R+D F+ D+G+ ++E+N
Sbjct: 218 RDDTRYLCPCGLSVEQEAEM----QHLALLAFQLIGCQGWGRVD-FLRGDDGKFYLLEIN 272
Query: 702 TVPGMTPSTVL 712
T PGMT +++
Sbjct: 273 TAPGMTDHSLV 283
>gi|417826079|ref|ZP_12472662.1| D-alanine--D-alanine ligase [Shigella flexneri J1713]
gi|335578459|gb|EGM63675.1| D-alanine--D-alanine ligase [Shigella flexneri J1713]
Length = 298
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L A L V
Sbjct: 50 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 108
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 109 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 157
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 158 A-LRL-------------------------AFQHDEEVLI-----------------EKW 174
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 175 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 225
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 226 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 282
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 283 GMSFSQLVVRILEL 296
>gi|384431770|ref|YP_005641130.1| D-alanine--D-alanine ligase [Thermus thermophilus SG0.5JP17-16]
gi|333967238|gb|AEG34003.1| D-alanine--D-alanine ligase [Thermus thermophilus SG0.5JP17-16]
Length = 319
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 115/312 (36%), Gaps = 82/312 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L E VF +HG GEDGT+Q LE G PY G GV AS CMDK L+ LA
Sbjct: 69 LPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVTASALCMDK---DLSKRVLAQ 125
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK + P VKPA G S G++R+ +DL
Sbjct: 126 AGVPVVPWVAVRKGEPPMVPF------------DPPFFVKPANTGSSVGISRVERFQDL- 172
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 173 -------EAALAL--------------------------------------AFRYDEKAV 187
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 188 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 245
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E + Q + L A L + G +R+D F+ GE+ + E+NT+PG TP++
Sbjct: 246 TQETV----QELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTS------ 293
Query: 717 LSEQPPMYPHQF 728
MYP F
Sbjct: 294 ------MYPRLF 299
>gi|260890294|ref|ZP_05901557.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
gi|260859914|gb|EEX74414.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
Length = 323
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 129/303 (42%), Gaps = 80/303 (26%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
K+ N V+IA+HG GEDG +Q++L++ GV Y+GPGVM+S CMDK + +A
Sbjct: 67 KVKDLNLDFVYIALHGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDK---EFSKRIVA 123
Query: 477 DLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
GV K VR E VD E K + VKP G S GV+ + E+
Sbjct: 124 GYGVRIAKWKSVRVGE------TVDF--ETIKKELGNRVVVKPNNGGSSIGVSFVENQEE 175
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L K LE GM E LI +E+L
Sbjct: 176 LE---KGLELVF------------GM------DKEALI-------EEVL----------- 196
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKF-QGGTGINLTPPP 653
VEI+V VI + P++ ++ +GD E K+ +GG + P
Sbjct: 197 --------HGVEISVPVID-----GEVFPTLRIEALAGDYFDYESKYAKGGANEYVFEFP 243
Query: 654 ASIMSTEALDKCKQRIELIAN----ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
+K + I A L+ EGF+RID F+ V+ +EVNT PGMT +
Sbjct: 244 ---------EKVQAEINKFAKDSYYGLKCEGFARID-FMVVNEETPYFMEVNTSPGMTSA 293
Query: 710 TVL 712
++L
Sbjct: 294 SLL 296
>gi|365828027|ref|ZP_09369859.1| hypothetical protein HMPREF0975_01642 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365264392|gb|EHM94200.1| hypothetical protein HMPREF0975_01642 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 388
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 118/287 (41%), Gaps = 58/287 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V +HG GEDGT+Q +LE GVPY G GV+AS MDK T + L G+ T
Sbjct: 121 VLPLLHGPYGEDGTIQGMLEMMGVPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 177
Query: 486 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + P I++ LT L VKPAR G S G++++ EDL
Sbjct: 178 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDL------- 225
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
P + A + P++L+ V + + Q +A R+ G
Sbjct: 226 --------PGAIEAARAV------DPKVLVESGIVGREIEVAVLQGRGDDAPRVAEPG-- 269
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL- 662
EI + V + +G+ E K+ + + P AL
Sbjct: 270 ---EIAMDV---------------TQGAGEFYDFETKYLAHDAVAMVCPARIGPKDRALI 311
Query: 663 -DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
D + E A+ EG +R+D F+ D GE ++ E+NT+PG TP
Sbjct: 312 MDTAARAFE----AVGCEGLARVDFFLT-DTGEAVVNEINTMPGFTP 353
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VKP RAGSS+G++ +D + G I +D +V+VE + G E VL G
Sbjct: 205 VKPARAGSSLGIS----KVDRPEDLPGAIEAARAVDPKVLVESGIV-GREIEVAVLQ-GR 258
Query: 100 GFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D P V P E+ + QG+ + +++ KYL VA P R I
Sbjct: 259 GDDA-PRVAEPGEIAMDVTQGAGE------FYDFETKYLAHDAVAMVCPARIGPKDRALI 311
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A+ F+ +G AR+D + + V + T G T + +F + +SG+E T
Sbjct: 312 MDTAARAFEAVGCEGLARVDFFLTDTGEAVVNEINTMPGFTPFS--MFPYMWQVSGLEYT 369
Query: 219 SFLFQ 223
+ +
Sbjct: 370 DLVSE 374
>gi|71909108|ref|YP_286695.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
gi|123626568|sp|Q47AA6.1|DDL_DECAR RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|71848729|gb|AAZ48225.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
Length = 301
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 125/316 (39%), Gaps = 78/316 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL----ALNHLADLGVL 481
FIA+HG GEDGT+Q LE +PYTG GV+AS MDK T L A + + +L
Sbjct: 58 AFIALHGRHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALL 117
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T + D E+ L P L VKPAR+G S GV K
Sbjct: 118 TADSDFADIEEELGLP----------------LFVKPAREGSSIGV------------TK 149
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
E L+ +R +P V ++ +
Sbjct: 150 VKERGALKAAYEEAAR----------------HDPLVIAEKGVMGG-------------- 179
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E TVG+IG MP + ++ + + E K+ L P + +
Sbjct: 180 -----EYTVGIIGD-----EAMPIIKIEPATEWYDYEAKYNRDDTRYLC--PCGLPEAKE 227
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
++ K +E L G+ R+D F+ ++G+ +EVNT PGMT + L+ A
Sbjct: 228 MEIRKGALEAF-RILGGRGWGRVD-FLMDEDGKYYFLEVNTAPGMTDHS-LVPMAARVNG 284
Query: 722 PMYPHQFFRKVLDLGS 737
YP R+VL+L +
Sbjct: 285 MDYP-TLVRRVLELAA 299
>gi|238761558|ref|ZP_04622533.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
gi|238700072|gb|EEP92814.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
Length = 289
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 124/315 (39%), Gaps = 76/315 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L
Sbjct: 32 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASG 91
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 92 ----LPISPYVALNRQQFETLSSEELAACVAKLGLP-LIVKPSHEGSSVGMSKVDRASEL 146
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ E F ++L
Sbjct: 147 ---------------------------------HAALVEAFRHDTDVLI----------- 162
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G+ ++PS+ ++ G E K+ P
Sbjct: 163 ------EKWLSGPEFTVAILGE-----DVLPSIRIQAPGVFYDYEAKYLSDETQYFCP-- 209
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 713
S +S E + + AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 210 -SGLSAELEQQLAELALQAYQALGCSGWGRVDVMQDSDGG-FYLLEVNTSPGMTSHSLV- 266
Query: 714 HQALSEQPPMYPHQF 728
PM Q+
Sbjct: 267 --------PMAARQY 273
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
++VKP+ GSS+G++ +D + ++E D V++E +L G EFT +L
Sbjct: 124 LIVKPSHEGSSVGMS----KVDRASELHAALVEAFRHDTDVLIEKWLS-GPEFTVAIL-- 176
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G D P S+ ++ ++Y KYL + + Y P +
Sbjct: 177 --GEDVLP--------------SIRIQAPGVFYDYEAKYL-SDETQYFCPSGLSAELEQQ 219
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+ E A +Q LG + R+D V S+ G ++N GM
Sbjct: 220 LAELALQAYQALGCSGWGRVD---------VMQDSD--------GGFYLLEVNTSPGMTS 262
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A + G S S ++ I+
Sbjct: 263 HSLVPMAARQYGLSFSQLVARIL 285
>gi|398835524|ref|ZP_10592886.1| D-alanine--D-alanine ligase [Herbaspirillum sp. YR522]
gi|398216310|gb|EJN02863.1| D-alanine--D-alanine ligase [Herbaspirillum sp. YR522]
Length = 334
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 126/314 (40%), Gaps = 79/314 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 474
+L E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS MDKV T + L H
Sbjct: 57 QLEAERFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKVMTKRIWLAHG 116
Query: 475 --LADLGVL----TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
VL T + +R D L P L +K +G + G+A
Sbjct: 117 LPTPRFAVLDAHATTREQLRVVPDQLGLP----------------LMLKAPHEGSTIGIA 160
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
++ N +S + ++++ E F+
Sbjct: 161 KV----------------------NGYSDMQEGFALCARYDDVVLAEEFI---------- 188
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
R E+TV VIG G +P + ++ G + K+
Sbjct: 189 ---------------RGRELTVPVIG-TGRDARALPVIEIRAPGGNYDYQNKYFTDDTQY 232
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNG--EVLIIEVNTVPG 705
L P P AL Q + + A +A+ G+SR+D + +G E ++E+NT PG
Sbjct: 233 LCPAPVD----AALALRLQELAVQAYHAVGCRGWSRVDFMLRDGDGKSEPYLLEINTSPG 288
Query: 706 MTPSTVLIHQALSE 719
MT +++ A +E
Sbjct: 289 MTGHSLVPMAAKAE 302
>gi|359300323|ref|ZP_09186162.1| D-alanine--D-alanine ligase [Haemophilus [parainfluenzae] CCUG
13788]
Length = 303
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 126/321 (39%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T V +K + + E+ +KL VKP+ +G S GV ++ +L
Sbjct: 110 -VGLPTAEMVVIKKGQAVNS------SEIIAKLGLPVF-VKPSSEGSSVGVFKVKTEAEL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
++A E F+ V +E L ++ + D
Sbjct: 162 QPAIEAALE----------------------------FDNIVLVEEFLAGAEYSVPVLD- 192
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
++P+V V G+ K+ + P +
Sbjct: 193 -----------------------GEVLPAVQVIPEGEFYDYHAKYISDNTQYVVPALSDE 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E KQ +++ G+SRID + NG+ ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAKIVKQAFDVVG----CRGWSRIDVMEDA-NGQFRLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ Q KVL+L +
Sbjct: 285 --NTVGLSFEQLVEKVLELSA 303
>gi|410866585|ref|YP_006981196.1| D-alanine--D-alanine ligase 1 [Propionibacterium acidipropionici
ATCC 4875]
gi|410823226|gb|AFV89841.1| D-alanine--D-alanine ligase 1 [Propionibacterium acidipropionici
ATCC 4875]
Length = 387
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 134/324 (41%), Gaps = 70/324 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q L E GV Y G GV AS CMDK T + L+ A LGV
Sbjct: 123 VFPLLHGPFGEDGTIQGLFEMTGVRYVGCGVAASANCMDKHLTKVLLDE-AGLGVGPYA- 180
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V R + P + E S L L VKPAR G S G+ R+ E L V A+EE
Sbjct: 181 -VIRPHEWQTDPQACL--ERLSGL-TYPLFVKPARGGSSVGITRVAGPEGL---VAAIEE 233
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+R H P++L+ E S +
Sbjct: 234 ----------ARRHD--------PKVLV--------EQGLSGR----------------- 250
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA-LDK 664
EI V+G H+ P I+ E F LT + +S A LD+
Sbjct: 251 -EIECSVLGG----HNGQPPRASLPGEIIVHNPEGFYDFDAKYLTDDALATVSVPAYLDE 305
Query: 665 CKQRI--ELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST--VLIHQAL 717
R E A Q+ EG +RID FV D G+VLI E NT+PG T ++ L+ QA
Sbjct: 306 ATTRTVRETAVKAFQVLGCEGLARIDTFVTED-GQVLINEPNTMPGFTRTSGFPLMWQAS 364
Query: 718 SEQPPMYPHQFFRKVLDLGSERFL 741
M + +LDL ER L
Sbjct: 365 G----MNYRELVTDLLDLAIERPL 384
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 41/211 (19%)
Query: 42 VKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP R GSS+G+T G++ ++++A+ D +V+VE L G E VL
Sbjct: 207 VKPARGGSSVGITRVAGPEGLVAAIEEAR-----RHDPKVLVEQGLS-GREIECSVL--- 257
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF-PIVVINS 157
G + P G + V + +++ KYL +A + P + +
Sbjct: 258 GGHNGQP-------PRASLPGEIIVHNPEGFYDFDAKYLTDDALATVSVPAYLDEATTRT 310
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+RE A FQ LG ARID + TE G +L + N + G +
Sbjct: 311 VRETAVKAFQVLGCEGLARIDTFV-----------------TEDGQVLINEPNTMPGFTR 353
Query: 218 TSF--LFQQASKVGFSHSNILRTIIGHACSR 246
TS L QAS G ++ ++ ++ A R
Sbjct: 354 TSGFPLMWQAS--GMNYRELVTDLLDLAIER 382
>gi|331645202|ref|ZP_08346313.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli M605]
gi|417660721|ref|ZP_12310302.1| D-alanine--D-alanine ligase B [Escherichia coli AA86]
gi|330909939|gb|EGH38449.1| D-alanine--D-alanine ligase B [Escherichia coli AA86]
gi|331045959|gb|EGI18078.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
(D-Ala-D-Ala ligase B) [Escherichia coli M605]
Length = 306
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVTILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 DMSFSQLVVRILEL 304
>gi|386359908|ref|YP_006058153.1| D-alanine--D-alanine ligase [Thermus thermophilus JL-18]
gi|383508935|gb|AFH38367.1| D-alanine--D-alanine ligase [Thermus thermophilus JL-18]
Length = 319
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 115/312 (36%), Gaps = 82/312 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L E VF +HG GEDGT+Q LE G PY G GV AS CMDK L+ LA
Sbjct: 69 LPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDK---DLSKRVLAQ 125
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK + P VKPA G S G++R+ +DL
Sbjct: 126 AGVPVVPWVAVRKGEPPMVPF------------DPPFFVKPANTGSSVGISRVERFQDL- 172
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 173 -------EAALAL--------------------------------------AFRYDEKAV 187
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 188 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 245
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E + Q + L A L + G +R+D F+ GE+ + E+NT+PG TP++
Sbjct: 246 TQETV----QELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTS------ 293
Query: 717 LSEQPPMYPHQF 728
MYP F
Sbjct: 294 ------MYPRLF 299
>gi|381191051|ref|ZP_09898563.1| D-alanyl-alanine synthetase A [Thermus sp. RL]
gi|380451140|gb|EIA38752.1| D-alanyl-alanine synthetase A [Thermus sp. RL]
Length = 319
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 115/312 (36%), Gaps = 82/312 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L E VF +HG GEDGT+Q LE G PY G GV AS CMDK L+ LA
Sbjct: 69 LPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVTASALCMDK---DLSKRVLAQ 125
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK + P VKPA G S G++R+ +DL
Sbjct: 126 AGVPVVPWVAVRKGEPPMVPF------------DPPFFVKPANTGSSVGISRVERFQDL- 172
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 173 -------EAALAL--------------------------------------AFRYDEKAV 187
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 188 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 245
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E + Q + L A L + G +R+D F+ GE+ + E+NT+PG TP++
Sbjct: 246 TQETV----QELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTS------ 293
Query: 717 LSEQPPMYPHQF 728
MYP F
Sbjct: 294 ------MYPRLF 299
>gi|260853305|ref|YP_003227196.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str. 11368]
gi|415780987|ref|ZP_11490757.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14]
gi|417295560|ref|ZP_12082813.1| D-alanine--D-alanine ligase [Escherichia coli 900105 (10e)]
gi|419252723|ref|ZP_13795275.1| ddlB [Escherichia coli DEC10A]
gi|419264472|ref|ZP_13806862.1| ddlB [Escherichia coli DEC10C]
gi|420120248|ref|ZP_14629458.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10030]
gi|420128318|ref|ZP_14636877.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10224]
gi|420132208|ref|ZP_14640588.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str. CVM9952]
gi|424748216|ref|ZP_18176365.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|425376826|ref|ZP_18761259.1| D-alanine--D-alanine ligase 1 [Escherichia coli EC1865]
gi|257751954|dbj|BAI23456.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368]
gi|323157841|gb|EFZ43944.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14]
gi|378108827|gb|EHW70439.1| ddlB [Escherichia coli DEC10A]
gi|378120086|gb|EHW81567.1| ddlB [Escherichia coli DEC10C]
gi|386261179|gb|EIJ16647.1| D-alanine--D-alanine ligase [Escherichia coli 900105 (10e)]
gi|394386108|gb|EJE63622.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10224]
gi|394429309|gb|EJF01742.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CVM10030]
gi|394430214|gb|EJF02561.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str. CVM9952]
gi|408311527|gb|EKJ28532.1| D-alanine--D-alanine ligase 1 [Escherichia coli EC1865]
gi|421945235|gb|EKU02462.1| D-alanine--D-alanine ligase [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 306
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 139/314 (44%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ AE+ AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-VAEN------ALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLD-SYGQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|269926708|ref|YP_003323331.1| D-alanine--D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
gi|269790368|gb|ACZ42509.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
Length = 362
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 155/373 (41%), Gaps = 90/373 (24%)
Query: 382 QVVNDLVEGLKKHSWFTG-FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTL 440
+V + V+ L + F G D+ D +P+ S + A VF +HG GEDGT+
Sbjct: 50 KVGEEAVKMLASSALFAGDSDVRDIVPV-DSQPRSVPEALSAVDVVFPLLHGPYGEDGTV 108
Query: 441 QSLLEAEGVPYTGPGVMASKTCMDKVAT-----SLALNHLADLGVLTINKDVRRKEDLLK 495
Q LE VPY G GV+ S MDK+A S L LG+L + D L
Sbjct: 109 QGFLELVNVPYVGSGVLGSSLSMDKIAMKKMFESEGLPITRYLGIL--------RSDWLS 160
Query: 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSF 555
P I ++ S+L+ VKPA G S G+ + A+D + ++ALE + +
Sbjct: 161 DP-EGIISKIESELEYPVF-VKPANLGSSIGITK---AKDRSSLLQALELA------SKY 209
Query: 556 SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK 615
R LI E VE E+ +
Sbjct: 210 DRR-------------LIVEQGVEAREL-------------------------------E 225
Query: 616 CGSMHSLMPSVTVKESGDIL------SLEEKFQGGTGINLTP---PPASIMSTEALDKCK 666
C + + P +V G+IL + E K+ + + P PP+ +S E D
Sbjct: 226 CAVLGNDYPRASV--VGEILPGDEFYTFEAKYISESSKTIIPADIPPS--VSDEIRDYAV 281
Query: 667 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPH 726
+ + + A G +R+D F+ +N +VL+ E+NT+PG TP + ++ L E +
Sbjct: 282 RAFKAVDAA----GLARVDFFLTSEN-KVLVNEINTIPGFTP--ISMYPKLWEASGLSYP 334
Query: 727 QFFRKVLDLGSER 739
RK+LDL ER
Sbjct: 335 DLVRKLLDLAMER 347
>gi|30061659|ref|NP_835830.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
gi|30039901|gb|AAP15635.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 2457T]
Length = 306
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L A L V
Sbjct: 58 VFIALHGPGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|320540403|ref|ZP_08040053.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
Tucson]
gi|320029334|gb|EFW11363.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
Tucson]
Length = 306
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 132/319 (41%), Gaps = 82/319 (25%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
I+L + VFI++HG GEDGT+Q LLE +PYTG GVMAS MDK + + +
Sbjct: 48 IQLKAQGFNKVFISLHGRGGEDGTIQGLLELLELPYTGSGVMASALGMDKWRSKMLWQSM 107
Query: 476 ADLGV---LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+L V + +N+ ++ K ++D L L VKP+ +G S G++++
Sbjct: 108 -ELPVAPYVALNRKQYAGDE--KAALLDRLASLGF-----PLIVKPSCEGSSVGMSKVSE 159
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
+ L V ALEE F DE+L
Sbjct: 160 SSTLEV---ALEEA------------------------------FRYDDEVLV------- 179
Query: 593 NADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
+W+ E TV ++G ++PS+ ++ +G + K+ G
Sbjct: 180 ----------EKWLSGPEYTVAMLG-----DQVLPSIRIQSAGRFYDYQAKYISGNTQYF 224
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P S +S E + AL G+ RID + D G ++EVNT PGMT +
Sbjct: 225 CP---SGLSAEQEAEMAALALRAYRALDCRGWGRIDLMQDSD-GSFYLLEVNTSPGMTNN 280
Query: 710 TVLIHQALSEQPPMYPHQF 728
+++ PM QF
Sbjct: 281 SLV---------PMAARQF 290
>gi|295106875|emb|CBL04418.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
Length = 310
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 128/289 (44%), Gaps = 67/289 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLTI 483
VFI +HGG GE+G++Q E+ G+PYTGPGV++S MDK L + + G + +
Sbjct: 61 VFICLHGGAGENGSIQGFCESVGLPYTGPGVLSSAIAMDKFVAKLLVESFRIPTPGYIRV 120
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+R +E I DI +L K L VKP+ +G + GV+ + +DL +
Sbjct: 121 ---LRGEE----CNIEDIRTKLGGK-----LVVKPSTEGSALGVSIVDNGDDLACAI--- 165
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ L + P+ ++ E F+
Sbjct: 166 -DTALELAPS------------------VLVEQFISGR---------------------- 184
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E+TV V+G G ++P + + + + E K++ ++ PA++ E L
Sbjct: 185 ---ELTVAVLG--GEKPRVLPPIEIIPANEFYDYEAKYEQDMAQHIC--PANLTEAE-LR 236
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+C++ +AL G SR D ++ N + +E NT+PGMT +++L
Sbjct: 237 QCEEMALGAHDALGCYGVSRTDCILDERN-RLWYLETNTIPGMTGTSLL 284
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 98/242 (40%), Gaps = 46/242 (19%)
Query: 7 ITVPSFL--LQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLK 64
I P ++ L+G E N + + KL GK+VVKP+ GS++GV++ D L
Sbjct: 112 IPTPGYIRVLRGEECNIED-----IRTKL---GGKLVVKPSTEGSALGVSIVDNG-DDLA 162
Query: 65 KAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR 124
A LE + V+VE F+ G E T VL G + P VL P +++
Sbjct: 163 CAIDTALE-LAPSVLVEQFIS-GRELTVAVL----GGE-KPRVLPP----------IEII 205
Query: 125 EKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 184
+ ++Y KY Q +A H P A+L L C+ +
Sbjct: 206 PANEFYDYEAKY--EQDMAQHICP-------------ANLTEAELRQCEEMALGA---HD 247
Query: 185 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHAC 244
+ + S T E + + + N I GM TS L A VG + + I+ A
Sbjct: 248 ALGCYGVSRTDCILDERNRLWYLETNTIPGMTGTSLLPDAAKAVGITFDELCWNIMEDAW 307
Query: 245 SR 246
SR
Sbjct: 308 SR 309
>gi|398307569|ref|ZP_10511155.1| D-alanyl-alanine synthetase A [Bacillus vallismortis DV1-F-3]
Length = 361
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 120/293 (40%), Gaps = 70/293 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL A G+
Sbjct: 97 VFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLFAQAGLAQAK 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K+D ++P V+ ++ +L VKPA G S G+++ E+L KA
Sbjct: 153 YAAFLKKDWTRSP-VESCEQVEEELGYPCF-VKPANLGSSVGISKCRNREELQ---KA-- 205
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
FE + D + + N
Sbjct: 206 -----------------------------FELAFQYDRKVVVEEGINGR----------- 225
Query: 605 WVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQ-GGTGINLTPPPASIMST 659
EI +GV+G KC + + P D + K++ G T + + PAS+
Sbjct: 226 --EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLVI---PASVTDE 274
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
E I+ A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 275 EYAKISDMAIQAF-KAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSMF 325
>gi|51891650|ref|YP_074341.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
14863]
gi|51855339|dbj|BAD39497.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
14863]
Length = 366
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 113/464 (24%), Positives = 180/464 (38%), Gaps = 119/464 (25%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
V+++FGG + E +VSLMS NV L + EV P + G + DP
Sbjct: 6 RVYLLFGGRSGEHEVSLMSARNVLEALDR-SKYEVIPVGI-----TKEGRWLQVGDP--- 56
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
LR TE V AA + GL ++G
Sbjct: 57 ------------LRALTEGVAAAGGRPV---------------------GLLGDPSYSG- 82
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
+P+ ++ ++ A + VF V HG GEDGT+Q LLE VPY G GV+AS
Sbjct: 83 ----PVPL----SDGLRPAAHDGPVVFFPVLHGTYGEDGTIQGLLEMANVPYVGCGVLAS 134
Query: 460 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
MDK + AL A L V +RR D + P I ++++ L+ VKPA
Sbjct: 135 SVAMDK-GVAKALFRQAGLEVGPYRVYLRR--DWERHP-EQIRADVSAHLRYPVF-VKPA 189
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G S G+ ++ EDL +A++E
Sbjct: 190 NLGSSVGITKVKRPEDLD---RAMDEA-------------------------------AR 215
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D + Q + EI V V+G + S+ G+IL E
Sbjct: 216 FDRRIIVEQGIDAR-------------EIEVAVLGNDDPIASV--------PGEILPGAE 254
Query: 640 KF----QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEV 695
+ + +G + T PA + + +++ +++ + A+ G +R+D F+ +
Sbjct: 255 FYDYTDKYFSGASQTRIPAD-LPDDLVEEFRRQAVVAFKAIDGSGMARVDFFLERGTNRI 313
Query: 696 LIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
I EVNT+PG T + ++ L E + + +++ L ER
Sbjct: 314 FINEVNTIPGFT--NISMYPKLWEASGIGYGELLDRLIQLALER 355
>gi|418039624|ref|ZP_12677883.1| D-alanine/D-alanine ligase [Escherichia coli W26]
gi|383477488|gb|EID69408.1| D-alanine/D-alanine ligase [Escherichia coli W26]
Length = 306
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 137/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPPGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|317059482|ref|ZP_07923967.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
gi|313685158|gb|EFS21993.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
Length = 288
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 83/295 (28%)
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
+E ++A+HGG GE+G +QS+LE G YTG GV AS MDK+ T +A L
Sbjct: 51 EEQYDLAYLALHGGAGENGEIQSVLELLGKKYTGSGVAASAISMDKLLT----KKIASLE 106
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
+ + K ++ + P++ VKP++DG S G+ E++
Sbjct: 107 GVRMAKTFTTVAEISRYPVM----------------VKPSKDGSSVGIHVCNNQEEVE-- 148
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
KAL+E + MI E +++ +
Sbjct: 149 -KALQEI----------SGYAMI------------EEYIQGE------------------ 167
Query: 600 KGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP-ASIM 657
E+TVGV+ GK + ++P ++ DI E K+ G I+ P A I
Sbjct: 168 -------ELTVGVLNGKALGVLKIIP-----QAADIYDYESKYAAGGSIHEFPARIAKIA 215
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
EA+ + I AL ++G SR D F+ D+ +V +EVN PGMT ++++
Sbjct: 216 YEEAMVNAVK----IHEALGMKGVSRSD-FILKDD-QVYFLEVNACPGMTKTSLV 264
>gi|415866918|ref|ZP_11539239.1| D-ala D-ala ligase, partial [Escherichia coli MS 85-1]
gi|315253166|gb|EFU33134.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
Length = 291
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 129/291 (44%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLV 283
>gi|28210053|ref|NP_780997.1| D-alanyl-alanine synthetase A [Clostridium tetani E88]
gi|39931118|sp|Q898Z5.1|DDLB_CLOTE RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|28202488|gb|AAO34934.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
Length = 358
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 117/290 (40%), Gaps = 74/290 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVL 481
VF +HG GEDGT+Q L + G+P GPGV++S CMDK+ T L + A+ V+
Sbjct: 104 VFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIYTKYVLENFKFKQANYVVV 163
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ + KE+++K KLQ +KPA G S G+ + E+L +K
Sbjct: 164 NKFEYEKNKEEIIKE---------VEKLQYDVF-IKPANSGSSVGITKAHNKEEL---LK 210
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
LEE + +L+ E
Sbjct: 211 GLEEAFIH------------------DKNVLVEEAI------------------------ 228
Query: 602 NSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
N+R EI V V+G K ++P + + E K+Q L P +
Sbjct: 229 NAR--EIEVAVLGNDDPKAAVPGEIIP------AKEFYDYEAKYQNENSELLIPANIDNI 280
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
E + + +I + L G +R+D ++ ++ EV EVNT+PG T
Sbjct: 281 KQEEIKELAIKIYKL---LGCSGLARVDFLMDKESNEVYFNEVNTLPGFT 327
>gi|91200089|emb|CAJ73132.1| strongly similar to D-alanine:D-alanine ligase [Candidatus Kuenenia
stuttgartiensis]
Length = 334
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 132/320 (41%), Gaps = 63/320 (19%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDG +Q LLE +G+PYTG GV AS+ MDKV + D G+ T
Sbjct: 60 FIALHGYFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRC---FLDAGLKT---- 112
Query: 487 VRRKEDLLKTPI--VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV---- 540
+ LLK P+ DI E+ + +KP G S GV+ + + +V
Sbjct: 113 --PEYFLLKKPVNLADIEQEIQE--FGLPVVIKPTNGGSSIGVSIIKEGNNFHYHVGEAL 168
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
K +E + + G+++ + P I E V D ++++ +
Sbjct: 169 KCGDEAFVERYVSGREFTIGILDSRSLP----IIEICVADDFFDYNAKYNS--------- 215
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP-PPASIMST 659
G +R+ I + F+ T I TP +
Sbjct: 216 GKTRYFVIN-----------------------------KTFENKTNILNTPCCDVGFLDA 246
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
DK ++ NA+ GFSR+D ++ N + I+EVNT+PG T ++L A +
Sbjct: 247 ALYDKAQELAIEAHNAIGCRGFSRVDILLDNKN-DFYILEVNTIPGFTEKSLLPMAARAA 305
Query: 720 QPPMYPHQFFRKVLDLGSER 739
K++DL S++
Sbjct: 306 DISF--TSLCEKIVDLASQK 323
>gi|430757091|ref|YP_007210801.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase; D-Ala
ligase) [Bacillus subtilis subsp. subtilis str. BSP1]
gi|430021611|gb|AGA22217.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase; D-Ala
ligase) [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 354
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 123/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL
Sbjct: 81 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLF 136
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A G+ K+D ++P + ++ +L VKPA G S G+++ E+
Sbjct: 137 AQAGLAQAKYAAFLKKDWTRSP-KESCEQVEQELGYPCF-VKPANLGSSVGISKCRNREE 194
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 195 LQ---KA-------------------------------FEIAFQYDRKVVVEEGINGR-- 218
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 219 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 261
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+I++ E K A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 262 ---AIVTDEEYAKISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 317
Query: 712 L 712
Sbjct: 318 F 318
>gi|421485328|ref|ZP_15932887.1| D-alanine--D-alanine ligase [Achromobacter piechaudii HLE]
gi|400196247|gb|EJO29224.1| D-alanine--D-alanine ligase [Achromobacter piechaudii HLE]
Length = 316
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 119/306 (38%), Gaps = 84/306 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 474
+LA E VFIA+HG GEDGT+Q LE G+PYTG G MAS MDK T + L H
Sbjct: 52 ELAAEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRVLLQHG 111
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
D VL + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPDFEVLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 533 AEDLT-VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
D+ Y A C E+L T
Sbjct: 156 YSDMKEAYAAA--ACY--------------------------------DSEVLAEQFITG 181
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF-----QGGTG 646
+ E+TV V+G G +P + + G E K+ Q
Sbjct: 182 R--------------ELTVAVLGS-GKGARALPVIEIAAPGGNYDYEHKYFSDDTQYFCP 226
Query: 647 INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706
NL P A +S A+ + AL EG+ R D ++ DN ++E+NT PGM
Sbjct: 227 ANLPPEVAEDVSAIAVKAYR--------ALGCEGWGRADFMLDRDN-RPWLLELNTSPGM 277
Query: 707 TPSTVL 712
T +++
Sbjct: 278 TSHSLV 283
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 35/207 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+++KP GS++G+T G D +K+A D V+ E F+ G E T VL G
Sbjct: 137 LIIKPPHEGSTVGITKVVGYSD-MKEAYAAA-ACYDSEVLAEQFIT-GRELTVAVLGSGK 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV +++ ++Y KY + Y P P V +
Sbjct: 194 GARALPV--------------IEIAAPGGNYDYEHKYF-SDDTQYFCPANLPPEVAEDVS 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A ++ LG + R D + L W ++N GM S
Sbjct: 239 AIAVKAYRALGCEGWGRAD-FMLDRDNR------------PW----LLELNTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
+ A +G S++++ I+ A +
Sbjct: 282 LVPMAAKAMGISYADLCVAILSEASCK 308
>gi|238786724|ref|ZP_04630525.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
gi|238725092|gb|EEQ16731.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
Length = 289
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 122/299 (40%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L +
Sbjct: 32 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQA-S 90
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
D L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 91 D---LPISPYVALNRQQFETLSSEELSACVAKLGLP-LIVKPSHEGSSVGMSKVDQASEL 146
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ + E F ++L
Sbjct: 147 ---------------------------------QAALVEAFRHDTDVLI----------- 162
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G ++PS+ ++ G E K+ P
Sbjct: 163 ------EKWLSGPEFTVAILGD-----EVLPSIRIQAPGVFYDYEAKYLSDETQYFCP-- 209
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E + + AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 210 -SGLSAELEQQLAELALQAYQALGCSGWGRVDVMQDSD-GRFYLLEVNTSPGMTSHSLV 266
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
++VKP+ GSS+G++ +D + + ++E D V++E +L G EFT +L
Sbjct: 124 LIVKPSHEGSSVGMS----KVDQASELQAALVEAFRHDTDVLIEKWLS-GPEFTVAIL-- 176
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G + P S+ ++ ++Y KYL + + Y P +
Sbjct: 177 --GDEVLP--------------SIRIQAPGVFYDYEAKYL-SDETQYFCPSGLSAELEQQ 219
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+ E A +Q LG + R+D V S+ G ++N GM
Sbjct: 220 LAELALQAYQALGCSGWGRVD---------VMQDSD--------GRFYLLEVNTSPGMTS 262
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A + G S S ++ I+
Sbjct: 263 HSLVPMAARESGLSFSQLVARIL 285
>gi|365873387|ref|ZP_09412920.1| D-alanine--D-alanine ligase [Thermanaerovibrio velox DSM 12556]
gi|363983474|gb|EHM09681.1| D-alanine--D-alanine ligase [Thermanaerovibrio velox DSM 12556]
Length = 309
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 114/291 (39%), Gaps = 60/291 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF+A+HGG GEDGTLQ LLEA G+PYTGP A CMDK T L L +
Sbjct: 58 VFVALHGGWGEDGTLQCLLEAHGIPYTGPRWGACWACMDKDVTRAVLESRGVLVPPGVVV 117
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
D R L ++ W + VKP R G + G+ + DL AL+E
Sbjct: 118 DDGRCPGDLLGDALERWGRIV---------VKPCRCGSTVGIGIVDNPGDLG---GALQE 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ + R ++ E F+ A R
Sbjct: 166 AV------RYDRK-------------VVAERFI---------------AGR--------- 182
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+TV V + +L P V ++ G K+ G L P P ++ E L +
Sbjct: 183 -ELTVAVFDGEDGVFAL-PPVEIRPVGGFYDYNSKYTPGMTEYLCPAP---LTHEELKEV 237
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
A+ +SR+D + ++EVNT PGMT ++++ A
Sbjct: 238 SDAAVRAYVAMGCSVYSRVDLRLEEGTCRAYVLEVNTAPGMTATSLVPKAA 288
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 38/204 (18%)
Query: 38 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVL 95
G++VVKP R GS++G+ G++D+ G + E + D +VV E F+ G E T V
Sbjct: 135 GRIVVKPCRCGSTVGI----GIVDNPGDLGGALQEAVRYDRKVVAERFI-AGRELTVAVF 189
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
D G V LP V++R ++Y KY P Y P +
Sbjct: 190 DGEDG-----VFALP---------PVEIRPVGGFYDYNSKYTP-GMTEYLCPAPLTHEEL 234
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+ + A + +G ++R+D + + ++N GM
Sbjct: 235 KEVSDAAVRAYVAMGCSVYSRVDLRLEEGTCRAY----------------VLEVNTAPGM 278
Query: 216 EQTSFLFQQASKVGFSHSNILRTI 239
TS + + A G+S +LR I
Sbjct: 279 TATSLVPKAAKAFGWSFEEMLRRI 302
>gi|283783672|ref|YP_003374426.1| D-alanine--D-alanine ligase [Gardnerella vaginalis 409-05]
gi|283441575|gb|ADB14041.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
409-05]
Length = 380
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 127/308 (41%), Gaps = 62/308 (20%)
Query: 418 LAKENQAT---------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
LA+EN T VF +HG GEDGTLQ LLE VPY G GV+AS CMDK
Sbjct: 90 LARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYA 149
Query: 469 SLALNHLADLGVL-TINKDVRR----KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 523
L A + V I D R+ E+ +I ++ + L VKP+R G
Sbjct: 150 K-QLFKAAGIDVAPGIALDARKFASDAENRFDAYAEEILAQVEAAKLEYPLFVKPSRAGS 208
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S GV ++ + KAL E + + + ++ E ++ EI
Sbjct: 209 SFGVTKVESRD-----AKALAEAIFEASEHDWR---------------VLVEQGIDAREI 248
Query: 584 LFSSQSTNKNAD-RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEK 640
+ + + + W G V+ K +E+G+ + K
Sbjct: 249 ECAVLAARDGEEPKASWPGEV--------VLDK-------------REAGEDQFYDFDSK 287
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ ++ P + + E L++ ++ A G SR+D+FV D G V++ E+
Sbjct: 288 YMDSAASHVEVP--ANLPAETLERVRKTALAAFKAADGRGLSRVDSFVTKD-GRVILNEI 344
Query: 701 NTVPGMTP 708
NT+PG TP
Sbjct: 345 NTMPGFTP 352
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 30/202 (14%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDD-RVVVELFLEGGSEFTAIVLDVGSG 100
VKP+RAGSS GVT D+ A+ I D RV+VE ++ E VL G
Sbjct: 201 VKPSRAGSSFGVTKVESR-DAKALAEAIFEASEHDWRVLVEQGID-AREIECAVLAARDG 258
Query: 101 FDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ P P EV L D RE +D +++ KY+ + P P + +
Sbjct: 259 EE--PKASWPGEVVL------DKREAGEDQFYDFDSKYMDSAASHVEVPANLPAETLERV 310
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R+ A F+ +R+D + T+ G ++ +IN + G
Sbjct: 311 RKTALAAFKAADGRGLSRVDSFV-----------------TKDGRVILNEINTMPGFTPI 353
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + G S+S+++ +I
Sbjct: 354 SMYPKAWEATGISYSDLITKLI 375
>gi|169831401|ref|YP_001717383.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
MP104C]
gi|229485966|sp|B1I3W6.1|DDL_DESAP RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|169638245|gb|ACA59751.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
MP104C]
Length = 306
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 111/281 (39%), Gaps = 63/281 (22%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG +GEDG +Q LLE G+PYTG GV+AS MDK+AT L H A L V +
Sbjct: 59 FIALHGPLGEDGAVQGLLEVLGIPYTGSGVLASALAMDKIATKKILAH-AGLPVPEYRE- 116
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
L+ D + ++L + P + G S GV + EDL +
Sbjct: 117 -------LEAGDADSARAVVAELGLPVVVKAPTQ-GSSIGVYIVEREEDLEARI------ 162
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
TD + + R++ +
Sbjct: 163 ---------------------------------TDAVAYGGT-------RVLVEKFIAGP 182
Query: 607 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 666
E+T V+G ++P + + + E K+ G +L PP E +
Sbjct: 183 ELTAAVLGN--REPRVLPLIEIVSATGKYDYESKYTPGLSDHLIPPRVPREVQERVSDLA 240
Query: 667 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
R AL GF+R+D V+ E I+E+NT+PG+T
Sbjct: 241 LR---AYRALGCRGFARVDLIVS--GNEAFILEINTIPGLT 276
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 80/207 (38%), Gaps = 36/207 (17%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVVK GSSIGV + D + + G RV+VE F+ G E TA VL
Sbjct: 136 VVVKAPTQGSSIGVYIVEREEDLEARITDAVAYG-GTRVLVEKFI-AGPELTAAVLG--- 190
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
+ P VL P +++ ++Y KY P + PPR P V +
Sbjct: 191 --NREPRVL-PL---------IEIVSATGKYDYESKYTPGLS-DHLIPPRVPREVQERVS 237
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ A ++ LG FAR+D + S F +IN I G+ S
Sbjct: 238 DLALRAYRALGCRGFARVD--LIVSGNEAF----------------ILEINTIPGLTDVS 279
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
A G S +++ ++ A R
Sbjct: 280 LFPDAARAAGMSFPDLVEHLVRLAQER 306
>gi|365089135|ref|ZP_09328106.1| D-alanine--D-alanine ligase [Acidovorax sp. NO-1]
gi|363416834|gb|EHL23930.1| D-alanine--D-alanine ligase [Acidovorax sp. NO-1]
Length = 329
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 125/304 (41%), Gaps = 77/304 (25%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA- 471
N L ++ A FIA+HG GEDGT+Q LE +PYTGPGVMAS MDKV T
Sbjct: 56 NALADLKRDGYARCFIALHGRHGEDGTVQGALELLRIPYTGPGVMASAIAMDKVMTKRVW 115
Query: 472 -LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
L + + D R++ ++++T + EL L VKP R+G S GV ++
Sbjct: 116 LAEGLPTPRYVWLAPD-RQQPEVVRT----VPDELG-----LPLIVKPPREGSSIGVTKV 165
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
ED+ V+ S + P++L E F+E +
Sbjct: 166 RGNEDMQEAVQ-------------LSAQYD--------PDVLC-EEFIEGE--------- 194
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSL------MPSVTVKESGDILSLEEKFQGG 644
E+T V+G+ S +L P + + K+Q
Sbjct: 195 ----------------EVTCPVLGQGASARALPVIRIVAPDGAYDYQNKYFTDDVKYQCP 238
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703
+G+ EA ++ QRI L A L G+ R D + + + ++E+NT
Sbjct: 239 SGL-----------PEAEEREIQRIVLEAYRTLGCRGWGRADLMIRASDRKPFLLEMNTS 287
Query: 704 PGMT 707
PGMT
Sbjct: 288 PGMT 291
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 75/209 (35%), Gaps = 34/209 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GSSIGVT G D + + + D V+ E F+E G E T VL G+
Sbjct: 149 LIVKPPREGSSIGVTKVRGNEDMQEAVQ--LSAQYDPDVLCEEFIE-GEEVTCPVLGQGA 205
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV + + D ++Y+ KY T V Y P P I+
Sbjct: 206 SARALPV--------------IRIVAPDGAYDYQNKYF-TDDVKYQCPSGLPEAEEREIQ 250
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG + R D S F ++N GM S
Sbjct: 251 RIVLEAYRTLGCRGWGRADLMIRASDRKPF----------------LLEMNTSPGMTGHS 294
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRFP 248
+ A G S+ + I+ A P
Sbjct: 295 LVPMSARASGISYEELCLRILADAALDTP 323
>gi|398809544|ref|ZP_10568391.1| D-alanine--D-alanine ligase [Variovorax sp. CF313]
gi|398085633|gb|EJL76285.1| D-alanine--D-alanine ligase [Variovorax sp. CF313]
Length = 323
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 121/311 (38%), Gaps = 77/311 (24%)
Query: 411 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 470
S E L +E A F+A+HG GEDGT+Q LE G+PYTG GVMAS MDKV T
Sbjct: 50 SQRELADLKREGFARCFVALHGRHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKR 109
Query: 471 --ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
+ L + + D + +E ++ P V L VKP R+G S GV
Sbjct: 110 IWQADGLPTPKYVRLAFDQQSREQVMVVPDV----------LGLPLIVKPPREGSSIGVT 159
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
++ +S+ + + ++ E F+E +
Sbjct: 160 KV----------------------EGYSQMQDAVTLSAKYDADVLCEEFIEGE------- 190
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL------MPSVTVKESGDILSLEEKFQ 642
E+T V+G+ +L P + + K+Q
Sbjct: 191 ------------------EVTCAVLGQGLDARALPVVRIAAPEGAYDYQNKYFTDDVKYQ 232
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVN 701
+G+ EA + QRI L A + L G+ R D + + + ++E+N
Sbjct: 233 CPSGL-----------PEAEEHEIQRITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMN 281
Query: 702 TVPGMTPSTVL 712
T PGMT +++
Sbjct: 282 TSPGMTSHSLV 292
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 74/205 (36%), Gaps = 34/205 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GSSIGVT G S + + D V+ E F+E G E T VL G
Sbjct: 145 LIVKPPREGSSIGVTKVEGY--SQMQDAVTLSAKYDADVLCEEFIE-GEEVTCAVL--GQ 199
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G D LP V + + ++Y+ KY T V Y P P + I+
Sbjct: 200 GLDARA---LPV---------VRIAAPEGAYDYQNKYF-TDDVKYQCPSGLPEAEEHEIQ 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ LG + R D S F ++N GM S
Sbjct: 247 RITLAAYHTLGCRGWGRADVMIRASDRKPF----------------LLEMNTSPGMTSHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHAC 244
+ A G ++ + ++ A
Sbjct: 291 LVPMSARAAGIAYEELCLRVLASAA 315
>gi|398309562|ref|ZP_10513036.1| D-alanyl-alanine synthetase A [Bacillus mojavensis RO-H-1]
Length = 361
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 127/303 (41%), Gaps = 70/303 (23%)
Query: 417 KLAKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
+++++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + H
Sbjct: 86 EVSQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKH 141
Query: 475 L-ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
L A G+ K+D ++P + ++ +L VKPA G S G+++
Sbjct: 142 LFAQAGLAQAKYTAFLKKDWTRSP-EESCEQVEQELGYPCF-VKPANLGSSVGISKCRNR 199
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
E+L KA FE + D + + N
Sbjct: 200 EELQ---KA-------------------------------FELAFQYDRKVVVEEGINGR 225
Query: 594 ADRLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
EI +GV+G KC ++ + P D + K++ G +
Sbjct: 226 -------------EIEIGVLGNDDPKCSAVGEIAPKT------DFYDYKAKYEDGDTDLI 266
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
PAS+ E + I+ ++ G R D F+ D GEVLI EVNT+PG TP
Sbjct: 267 I--PASVTDEEYAKISEMAIKAF-KSIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPF 322
Query: 710 TVL 712
++
Sbjct: 323 SMF 325
>gi|345432579|dbj|BAK68931.1| D-alanylalanine synthetase [Vibrio parahaemolyticus]
gi|345432593|dbj|BAK68938.1| D-alanylalanine synthetase [Vibrio parahaemolyticus]
gi|345432597|dbj|BAK68940.1| D-alanylalanine synthetase [Vibrio parahaemolyticus]
Length = 282
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 112/291 (38%), Gaps = 63/291 (21%)
Query: 422 NQATVFIA--VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
NQ FI +HG GE G +QSL E G+PY G G AS +K+ + L + L
Sbjct: 50 NQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL---- 105
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK--TLCVKPARDGCSTGVARLCCAEDLT 537
D+ L T + H + K + VK AR G S G
Sbjct: 106 ------DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGC---------- 149
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
Y A ++ + + ++F + D++
Sbjct: 150 -YSVAEKQAIAKAVNDAFGYS------------------------------------DQV 172
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ + + E+ V G +H P + G S +EK+ + +LT A +
Sbjct: 173 LVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH-SLTEVEAKNL 231
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ E +DK + E + + L SRID F+ DN E+ + EVNT PGMTP
Sbjct: 232 TQEQIDKIRHASETVFKQMNLRHLSRIDFFLTEDN-EIYLNEVNTFPGMTP 281
>gi|258511603|ref|YP_003185037.1| D-alanine--D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478329|gb|ACV58648.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 383
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 181/470 (38%), Gaps = 120/470 (25%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG + E +VSL S +V + A + + T + S D
Sbjct: 8 VGVIFGGKSGEHEVSLQSAKSV---MDALDPLHYTTIPIGISKDGR-------------- 50
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
W V + + + A A+ A S N+ +N ++GL
Sbjct: 51 ---WH-----VGKGAWKALEAKQPAALPSKSAQNASSPSNRFINPEIQGLSP-------- 94
Query: 402 IADELPMRHSINEWIKLAKENQA-TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
+ ++ S +W+ A N+ VF +HG GEDGT+Q LLE G+PY G GV+AS
Sbjct: 95 ----VEVKRS-PDWLPPALVNEIDVVFPVLHGTFGEDGTIQGLLEMVGIPYVGSGVLASA 149
Query: 461 TCMDKVA-----TSLALNHLADLGVLTIN------KDVRRKEDLLKTPIVDIWHELTSKL 509
MDK+A +++ + +G + + VR E+ L P
Sbjct: 150 LGMDKIAMKQIFSAVGIPQARWVGFTRASWAQDDGRIVREIEEQLGYP------------ 197
Query: 510 QCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
C VKPA G S G+++ +L V+A+ L S+ R
Sbjct: 198 -C---FVKPANLGSSVGISKARNQREL---VEAVHLAL------SYDRR----------- 233
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
+I E ++ EI +G++G + S+ + K
Sbjct: 234 --VIVEEAIDAR-------------------------EIEIGILGNDDPIASVAGEIVPK 266
Query: 630 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN 689
+ E K+Q G P S +A++ R A+ G +R+D FV
Sbjct: 267 R--EFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIR---AFQAIDGSGLARVDFFVE 321
Query: 690 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
G VL+ E+NT+PG T + ++ L E + + ++++L ER
Sbjct: 322 RGTGRVLVNEINTMPGFTRFS--MYPKLWEASGLAYDKLLDRLIELALER 369
>gi|239628538|ref|ZP_04671569.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47_FAA]
gi|239518684|gb|EEQ58550.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47FAA]
Length = 353
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 67/319 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++DLG+
Sbjct: 97 VFPILHGLYGEDGTIQGLLELARIPYVGCGVLASAVSMDKLYTKII---VSDLGIRQAEY 153
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ +E+L ++ S+++ + +KP+ G S G+++ ++L
Sbjct: 154 ESVYREELGDM------EQVASRIEKHFPYPVFIKPSNAGSSRGISKAGNRQELEA---- 203
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
G++E +IL+ E V + + ++ G
Sbjct: 204 -----------------GLLEAARHDRKILVEETIV------------GREVECAVFGGG 234
Query: 603 SRWVEIT-VGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
S +E + VG + + + + K+ +T P ++ A
Sbjct: 235 SHGIEASGVG---------------EILAAAEFYDFDAKYFNEESRTVTDP---VLPDGA 276
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
K ++ I A+ G +R+D FV DNGEV+ E+NT+PG T + ++ L E
Sbjct: 277 TQKVRRAAMDIFRAVDGYGLARVDFFVK-DNGEVVFNEINTMPGFT--AISMYPMLWEAR 333
Query: 722 PMYPHQFFRKVLDLGSERF 740
+ Q +L G ER+
Sbjct: 334 GIGKDQLVGMLLSHGMERY 352
>gi|16077523|ref|NP_388337.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|418034444|ref|ZP_12672916.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|2829831|sp|P96612.1|DDL_BACSU RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|1881266|dbj|BAA19293.1| PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis]
gi|2632756|emb|CAB12263.1| D-alanyl-D-alanine ligase A [Bacillus subtilis subsp. subtilis str.
168]
gi|351468697|gb|EHA28906.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 354
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 123/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL
Sbjct: 81 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLF 136
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A +G+ K+D ++P + E+ +L VKPA G S G+++ E+
Sbjct: 137 AQVGLAQAKYAAFLKKDWTRSP-KESCEEVEQELGYPCF-VKPANLGSSVGISKCRNREE 194
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 195 LQ---KA-------------------------------FELAFQYDRKVVVEEGINGR-- 218
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 219 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 261
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+I++ E A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 262 ---AIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 317
Query: 712 L 712
Sbjct: 318 F 318
>gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
gi|123624027|sp|Q46WZ6.1|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
Length = 327
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 124/313 (39%), Gaps = 80/313 (25%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD P S+ E LA VFIA+HG GEDGT+Q LLE GVPYTG GV+A
Sbjct: 51 GFD-----PATQSVAE---LAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVLA 102
Query: 459 SKTCMDKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK AT L + H +L + D L P++
Sbjct: 103 SALAMDKQATKRLWMTHDLSTPRFAMLYADTDFDAVVADLGLPLI--------------- 147
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574
VKPAR+G S G++++ A + +F +A + +I
Sbjct: 148 -VKPAREGSSIGLSKVTDASQMR---------------EAFEKAAAL-------DNDVIA 184
Query: 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 634
E F++ E+T ++G+ G+ +P + +
Sbjct: 185 ETFIDG-------------------------AELTCPLVGE-GATAEALPVIRIVAPDSN 218
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
+ K+ L P S +S E + +Q L G++R D + D G+
Sbjct: 219 YDYQNKYFTDDTQYLCP---SGLSAEVEREVQQLAVQAYRVLGCRGWARADVMLRAD-GK 274
Query: 695 VLIIEVNTVPGMT 707
++E+NT PGMT
Sbjct: 275 PFLLEMNTSPGMT 287
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 41/207 (19%)
Query: 40 VVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
++VKP R GSSIG VT A + ++ +KA +D+ V+ E F++ G+E T ++
Sbjct: 146 LIVKPAREGSSIGLSKVTDASQMREAFEKAA-----ALDNDVIAETFID-GAELTCPLVG 199
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G+ + PV + + D+ ++Y+ KY T Y P V
Sbjct: 200 EGATAEALPV--------------IRIVAPDSNYDYQNKYF-TDDTQYLCPSGLSAEVER 244
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+++ A ++ LG +AR D V ++ G ++N GM
Sbjct: 245 EVQQLAVQAYRVLGCRGWARAD---------VMLRAD--------GKPFLLEMNTSPGMT 287
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHA 243
S + A G S+ + + ++ A
Sbjct: 288 GHSLVPMAARAAGISYEDFVMQVVAAA 314
>gi|251783655|ref|YP_002997959.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)]
gi|253774878|ref|YP_003037709.1| D-alanine--D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254160214|ref|YP_003043322.1| D-alanine--D-alanine ligase [Escherichia coli B str. REL606]
gi|254287017|ref|YP_003052765.1| D-alanyl-alanine synthetase A [Escherichia coli BL21(DE3)]
gi|297518217|ref|ZP_06936603.1| D-alanine--D-alanine ligase [Escherichia coli OP50]
gi|300931781|ref|ZP_07147081.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
gi|422788330|ref|ZP_16841067.1| D-alanine-D-alanine ligase [Escherichia coli H489]
gi|242375928|emb|CAQ30609.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)]
gi|253325922|gb|ACT30524.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972115|gb|ACT37786.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
gi|253976324|gb|ACT41994.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
gi|300460441|gb|EFK23934.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
gi|323960038|gb|EGB55684.1| D-alanine-D-alanine ligase [Escherichia coli H489]
Length = 306
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 137/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++ + ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILDE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|291302804|ref|YP_003514082.1| D-alanine--D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
gi|290572024|gb|ADD44989.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
Length = 346
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 116/287 (40%), Gaps = 72/287 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVL 481
VF +HG +GEDG +Q LLE G+PY G V S CMDK T L H ++
Sbjct: 94 VFPVLHGKLGEDGAIQGLLELSGIPYVGCDVQTSALCMDKSLTYLVAQHAGITTPQYWIV 153
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T NKD+ + D L P+V VKPAR G S GV ++ E+L +
Sbjct: 154 TANKDI--EPDRLPYPVV----------------VKPARSGSSFGVNKVTHEEELQTAID 195
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+ ++LI E V T
Sbjct: 196 TARQY---------------------DSKVLIEEAIVGT--------------------- 213
Query: 602 NSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
E+ ++G + G + + + V + + E + G+ + PA I S E
Sbjct: 214 -----EVGCSILGERYGLVAGEVDQINVSQGIFRIHQENNPESGSENSTITVPADI-SLE 267
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + + AL +G +RID F+ D G +++ EV T+PGMT
Sbjct: 268 SRSLVQETAKTLYRALGGKGLARIDFFLKED-GTLVLNEVQTLPGMT 313
>gi|120609517|ref|YP_969195.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
gi|190359104|sp|A1TKD3.1|DDL_ACIAC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|120587981|gb|ABM31421.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
Length = 334
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 124/306 (40%), Gaps = 81/306 (26%)
Query: 411 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 470
S ++ +L A FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 56 SQSDLSELKSHGYARCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASAIAMDKIMT-- 113
Query: 471 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDG 522
K + R E L P D W ++S + + VKP+R+G
Sbjct: 114 --------------KRIWRFEGL---PTPD-WRLVSSAAETAQALEDLGSPMIVKPSREG 155
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
+ G+ ++ P +A+ + + PE+L E F+E +
Sbjct: 156 STIGLTKV-------------------TSPGQCEQAYRLASRYD--PEVLC-EQFIEGE- 192
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
E T V+G+ H+L V G+ + F
Sbjct: 193 ------------------------ETTCPVLGQGAGAHALPVIRIVAPEGNYDYQNKYF- 227
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVN 701
T + P + E ++ QR+ + A LQ G++R D + + + ++E+N
Sbjct: 228 --TDVTQYHCPCGLPEQE--EREIQRLVVEAFRTLQCRGWARADIMIRASDRKPFLLEIN 283
Query: 702 TVPGMT 707
T PGMT
Sbjct: 284 TSPGMT 289
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 40 VVVKPTRAGSSIGVT--VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 97
++VKP+R GS+IG+T + G + + + D V+ E F+E G E T VL
Sbjct: 147 MIVKPSREGSTIGLTKVTSPGQCEQAYR----LASRYDPEVLCEQFIE-GEETTCPVLGQ 201
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G+G PV + + + ++Y+ KY T YH P P
Sbjct: 202 GAGAHALPV--------------IRIVAPEGNYDYQNKYF-TDVTQYHCPCGLPEQEERE 246
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I+ F+ L +AR D S F +IN GM
Sbjct: 247 IQRLVVEAFRTLQCRGWARADIMIRASDRKPF----------------LLEINTSPGMTG 290
Query: 218 TSFLFQQASKVGFSHSNI-LRTIIG 241
S + A +G S+ + LR + G
Sbjct: 291 HSLVPMSARAMGVSYEELCLRILAG 315
>gi|297202608|ref|ZP_06920005.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
gi|197709862|gb|EDY53896.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
Length = 385
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 121/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLK--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ + E + IVD E L VKPAR G S G+ ++ +DL+
Sbjct: 180 VIRPREWEQNESAARKKIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DDLS--- 228
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
G+ DE + +QS + +++ +
Sbjct: 229 -------------------GL-------------------DEAIAEAQSHDP---KILVE 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + + E K+ I+ TP PA +
Sbjct: 248 AALRGREIECGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + K ++ +A EG R D F+ D GE +I E+NT+PG TP
Sbjct: 303 PEETAEVQKLAVDAF-DAASCEGLVRADFFLTED-GEFVINEINTLPGFTP 351
>gi|297539589|ref|YP_003675358.1| D-alanine/D-alanine ligase [Methylotenera versatilis 301]
gi|297258936|gb|ADI30781.1| D-alanine/D-alanine ligase [Methylotenera versatilis 301]
Length = 312
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 112/291 (38%), Gaps = 71/291 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL---ALNHLA-DLGVL 481
VFI +HG GEDG +Q LE +PYTG GVMAS MDK T L A+N + D ++
Sbjct: 64 VFINLHGRYGEDGCIQGALEMLHIPYTGSGVMASAIGMDKWRTKLLWRAMNVITPDFELV 123
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T D E L P L VKPA +G S G++++ A L K
Sbjct: 124 TATSDFAAIEKSLGLP----------------LFVKPANEGSSLGISKVKQAGGLQAAYK 167
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
E +P ++I E F+
Sbjct: 168 IAAEA-------------------DP---LVIAEKFINGG-------------------- 185
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E TVG+IG + +P + + + E K+ L P +S E
Sbjct: 186 -----EYTVGIIGDGKGGYQALPIIRIVPKNEFYDFEAKYLRDDTEYLCP---CGLSAEK 237
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ +Q + G+ R+D F+ D G +EVNT PGMT +++
Sbjct: 238 EAQIQQEALQAFRTIGCRGWGRVD-FLMDDAGNHYFLEVNTSPGMTDHSLV 287
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 29/167 (17%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-----ILEGIDDRVVVELFLEGGSEFTAIV 94
+ VKP GSS+G++ +K+A G+ I D V+ E F+ GG I+
Sbjct: 140 LFVKPANEGSSLGIS-------KVKQAGGLQAAYKIAAEADPLVIAEKFINGGEYTVGII 192
Query: 95 LDVGSGFDCHPVV-LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
D G+ P++ ++P K+ +++ KYL Y P
Sbjct: 193 GDGKGGYQALPIIRIVP---------------KNEFYDFEAKYL-RDDTEYLCPCGLSAE 236
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE 200
I++ A F+ +G + R+D + H F T G T+
Sbjct: 237 KEAQIQQEALQAFRTIGCRGWGRVDFLMDDAGNHYFLEVNTSPGMTD 283
>gi|54309150|ref|YP_130170.1| D-alanine-D-alanine ligase B [Photobacterium profundum SS9]
gi|46913582|emb|CAG20368.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
SS9]
Length = 308
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 128/291 (43%), Gaps = 74/291 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 483
VFIA+HGGIGE G +Q+LL+ +PYTG G +AS ++K+ + N L +T+
Sbjct: 60 VFIALHGGIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTL 119
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+K PI DI +L+S + C + VKP GCS GV+++ DL L
Sbjct: 120 HK---------HAPIEDIKAQLSS-VVCPVV-VKPISQGCSIGVSKVDNNADL------L 162
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E + F D+IL S +
Sbjct: 163 EA---------------------------VITAFEYDDDILIESFIAGR----------- 184
Query: 604 RWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
E T V+ GK +P V ++ S + KF G+ P+ + S +
Sbjct: 185 ---EYTCAVLNGKP------LPIVQIR-SEQFFDYDAKF--GSQSATYHCPSDLTSEQER 232
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
D Q + L A NAL G+ R+D ++ ++G+V +IE+NT+PGMT +V
Sbjct: 233 D--MQALALNAYNALGCRGWGRVDTILD-ESGDVFLIEMNTIPGMTTRSVF 280
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 79/204 (38%), Gaps = 40/204 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVVKP G SIGV+ D L+ I DD +++E F+ G E+T VL+ G
Sbjct: 139 VVVKPISQGCSIGVSKVDNNADLLEAV--ITAFEYDDDILIESFI-AGREYTCAVLN-GK 194
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
P+V + +E QF F+Y K+ +Q YH P ++
Sbjct: 195 PL---PIVQIRSE---QF------------FDYDAKF-GSQSATYHCPSDLTSEQERDMQ 235
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A + LG + R+D E G + ++N I GM S
Sbjct: 236 ALALNAYNALGCRGWGRVDTIL-----------------DESGDVFLIEMNTIPGMTTRS 278
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
A + G S ++ +++ A
Sbjct: 279 VFPMAAKEAGLSFGQVISSLLDSA 302
>gi|399116611|emb|CCG19418.1| D-alanine--D-alanine ligase [Taylorella asinigenitalis 14/45]
Length = 314
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 70/289 (24%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDG +Q LLE VPYTGPGVM+S M+K+ ++ D G+ T +
Sbjct: 61 FIALHGRYGEDGCIQGLLELLKVPYTGPGVMSSAIGMNKI---ISKKIFIDEGLPTPDYR 117
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
V + + LK V + + + VKP ++G + G+ +
Sbjct: 118 VVKSYEELKKAAVSLGY---------PIIVKPPQEGSTIGLMK----------------- 151
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS--QSTNKNADRLMWKGNSR 604
VE+DE+L S+ +S + D L+ K
Sbjct: 152 -------------------------------VESDEMLESAFNESGQYDGDLLVEK-CIE 179
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL-D 663
E+TV ++GK + +L P V + ++K+ ++P TE + D
Sbjct: 180 GRELTVAILGKQPNTKAL-PLVEIITPDGNYDYDQKYNRDDTKYISPAEIDPKLTEEIQD 238
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
C + +AL+ EG+SR+D ++ N + I+E+NT PGMT +++
Sbjct: 239 ICIKAY----DALECEGWSRVDVMLDGQN-KPWILEINTSPGMTSHSLV 282
>gi|221308278|ref|ZP_03590125.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312600|ref|ZP_03594405.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221317524|ref|ZP_03598818.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221321800|ref|ZP_03603094.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402774701|ref|YP_006628645.1| D-alanine--D-alanine ligase [Bacillus subtilis QB928]
gi|452916550|ref|ZP_21965173.1| D-alanine--D-alanine ligase [Bacillus subtilis MB73/2]
gi|402479886|gb|AFQ56395.1| D-alanyl-D-alanine ligase A [Bacillus subtilis QB928]
gi|452114690|gb|EME05089.1| D-alanine--D-alanine ligase [Bacillus subtilis MB73/2]
Length = 361
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 123/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL
Sbjct: 88 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLF 143
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A +G+ K+D ++P + E+ +L VKPA G S G+++ E+
Sbjct: 144 AQVGLAQAKYAAFLKKDWTRSP-KESCEEVEQELGYPCF-VKPANLGSSVGISKCRNREE 201
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 202 LQ---KA-------------------------------FELAFQYDRKVVVEEGINGR-- 225
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 226 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 268
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+I++ E A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 269 ---AIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 324
Query: 712 L 712
Sbjct: 325 F 325
>gi|406927423|gb|EKD63459.1| hypothetical protein ACD_51C00276G0001 [uncultured bacterium]
Length = 355
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 133/321 (41%), Gaps = 69/321 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL-----ALNHLADLG 479
+F +HG GEDGT+Q LLE GVPY G GVMAS MDK+ T L + +G
Sbjct: 81 VIFPVLHGPYGEDGTIQGLLEIAGVPYVGCGVMASSVSMDKLMTKAVWKQSGLPQVPYVG 140
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
L + R + I I +EL + VKPA G S G+++ A+D
Sbjct: 141 FLRKEWETNR-----EMIIKKILNELKY-----PMFVKPANMGSSVGISK---AKDKDGL 187
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
+K +E + +F R ++ E VE EI L
Sbjct: 188 IKGIELAV------AFDRR-------------IVVEQGVEAREI------------ELAV 216
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
GN E+ V +G+ + G+ +K+ G + P ++
Sbjct: 217 LGND---EVQVAEVGE------------IIVGGEFYDFNDKYVDGKSTSRVPAD---LTP 258
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
++ ++ A+ G SR+D F++ +G+ + E+NT+PG T ++ ++ + +
Sbjct: 259 SQKEEAQELATSAFKAVDGAGMSRVDLFLDKKSGKFFLNEINTIPGFT--SISMYPKMWQ 316
Query: 720 QPPMYPHQFFRKVLDLGSERF 740
+ ++++L ERF
Sbjct: 317 ASGLSYEALIDRLVELAIERF 337
>gi|373470994|ref|ZP_09562076.1| D-ala D-ala ligase protein [Lachnospiraceae bacterium oral taxon
082 str. F0431]
gi|371761327|gb|EHO49956.1| D-ala D-ala ligase protein [Lachnospiraceae bacterium oral taxon
082 str. F0431]
Length = 349
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 132/325 (40%), Gaps = 82/325 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-----ADLGV 480
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T L ++ L A V
Sbjct: 95 VFPVLHGLYGEDGTVQGLLELAKIPYVGCGVLASAIGMDKLYTKLVVDKLGIRQAAYEAV 154
Query: 481 L------TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L + + +RR ED + P+ +KP+ G S GV++ E
Sbjct: 155 LDYEAKEDLTRKIRRIEDRFEYPVF----------------IKPSNAGSSRGVSKASNTE 198
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+L G++E ++L+ E V
Sbjct: 199 ELK---------------------KGILEALKHDRKVLVEETIV---------------- 221
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
G+ E+ GV+G+ G + + +K + + K++ + + L
Sbjct: 222 ------GH----EVECGVLGRPGDVMASGVG-EIKSAATFYDYDAKYKLDS-LTLLDSKL 269
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
E L +C ++ I AL G SR+D F D GE++ E+NT+PG T + ++
Sbjct: 270 PDGVREKLPECAKK---IFTALDGFGLSRVDFFAKED-GEIVFNEINTMPGFT--AISMY 323
Query: 715 QALSEQPPMYPHQFFRKVLDLGSER 739
L E + K+++L ER
Sbjct: 324 PMLFEAAGIDKKSLVDKLIELAFER 348
>gi|294638206|ref|ZP_06716460.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
gi|291088642|gb|EFE21203.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
Length = 409
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 119/287 (41%), Gaps = 70/287 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 480
+F VHG GEDG LQ +L+ +P+ G ++ S CMDK + L D G+
Sbjct: 144 IFPIVHGTQGEDGCLQGMLKILNLPFVGSDIIGSAACMDK---DICKRLLRDAGLPVTPF 200
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+T+ +D + D +E S+ TL VKPA G S GV+++ AE+ Y
Sbjct: 201 VTLTRDTQADYD----------YETLSRQLGSTLFVKPANQGSSVGVSKVRNAEE---YA 247
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E L F+ +K L
Sbjct: 248 RAI-------------------------AEALRFD---------------HKVIIELGVV 267
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G EI ++G + S+ + + D S + K+ G + P M+ E
Sbjct: 268 GR----EIECAILGNEAAQASVCGEIILH--SDFYSYDSKYISAQGAQVVVPAQ--MTPE 319
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ +Q AL+ G +R+D F+ + GEV+I E+NT+PG T
Sbjct: 320 SSERVRQIALQAFQALECRGLARVDVFLT-EEGEVIINEINTLPGFT 365
>gi|269792853|ref|YP_003317757.1| D-alanine--D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100488|gb|ACZ19475.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 316
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 119/305 (39%), Gaps = 62/305 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF+A+HGG GEDGTLQ LL+ +PYTGP A CMDK T GVL + +
Sbjct: 58 VFVALHGGWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITR---------GVL-LAR 107
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
VR E + +D L + L VKP R G + G+ + + +AL+E
Sbjct: 108 GVRVPEGIPFDGSMDQGVLLELLRRWGRLVVKPCRCGSTVGIG---IVDHPSRLDRALDE 164
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ R L+ E F+E E+ + T + L
Sbjct: 165 AF------RYDRR-------------LVVERFIEGRELTVAVFDTPEGPKAL-------- 197
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
P+V ++ K+ G L P P +S + +
Sbjct: 198 ------------------PTVEIRPRSGFYDYSSKYTKGMTEYLCPAP---LSEQEAEAV 236
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
+ A+ +SR+D + GE ++EVNT PGMT ST L+ +A + +P
Sbjct: 237 ARAAVEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMT-STSLVPKAANAFGWDFP 295
Query: 726 HQFFR 730
R
Sbjct: 296 EMLRR 300
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 38/204 (18%)
Query: 38 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVL 95
G++VVKP R GS++G+ G++D + + E D R+VVE F+E G E T V
Sbjct: 134 GRLVVKPCRCGSTVGI----GIVDHPSRLDRALDEAFRYDRRLVVERFIE-GRELTVAVF 188
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
D G P +V++R + ++Y KY Y P
Sbjct: 189 DTPEGPKALP--------------TVEIRPRSGFYDYSSKYT-KGMTEYLCPAPLSEQEA 233
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
++ A ++ +G ++R+D + G+ E + ++N GM
Sbjct: 234 EAVARAAVEAYRAMGCSVYSRVD-------------VRLEEGTGEPRVL---EVNTAPGM 277
Query: 216 EQTSFLFQQASKVGFSHSNILRTI 239
TS + + A+ G+ +LR I
Sbjct: 278 TSTSLVPKAANAFGWDFPEMLRRI 301
>gi|383649296|ref|ZP_09959702.1| D-alanyl-alanine synthetase A [Streptomyces chartreusis NRRL 12338]
Length = 385
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 121/293 (41%), Gaps = 73/293 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L L
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYL-- 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ ++ E + IVD E L VKPAR G S G+ + A+DL+
Sbjct: 180 VIRPREWQQDEPAARKKIVDFAGE-----HGWPLFVKPARAGSSIGITK---ADDLSGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E ++ +++ +
Sbjct: 232 EAIAEA--------------------------------------------QRHDPKILVE 247
Query: 601 GNSRWVEITVGVI----GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
R EI GV+ G S+ + +PS E E K+ T + P P +
Sbjct: 248 AALRGREIECGVLEFEDGPRASVPAEIPS---PEEHAYYDFEAKYIDST-PGIVPAPLTP 303
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
T + QR+ + A A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 304 EETAQV----QRLAVDAFEAASCEGLVRADFFLT-EDGEFVINEINTMPGFTP 351
>gi|404369288|ref|ZP_10974629.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
gi|313690675|gb|EFS27510.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
Length = 288
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 121/307 (39%), Gaps = 90/307 (29%)
Query: 416 IKLAKENQATVFI---------AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
I + KEN + FI A HGG GEDG +Q LL+ G PYTG G AS MDKV
Sbjct: 38 IDVTKENLVSAFIDNEYDFAYLAFHGGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKV 97
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
T LA+ + + K+ + D+ P+V +KPA +G S G
Sbjct: 98 IT----KKLAESAGVRVAKNYDKVSDIDSYPVV----------------IKPALEGSSVG 137
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
+ C H E E++ + +E
Sbjct: 138 I--FFC--------------------------HNREEAEKAAGELVGKKIVIEE------ 163
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
M G+ E+TVGVI G+ + ++P + E K+ G
Sbjct: 164 -----------MITGD----ELTVGVINGEGIGVLRIIP------KNEFYDYESKYAEGG 202
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
++ P + +A D+ + + N L L G SR D + D +V +EVNT+PG
Sbjct: 203 SVHEYPAK---IDKKAYDEALENAVKVHNVLGLAGISRSDFILKDD--KVYFLEVNTLPG 257
Query: 706 MTPSTVL 712
MT ++++
Sbjct: 258 MTKTSLI 264
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 42/207 (20%)
Query: 34 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 93
D +S VV+KP GSS+G+ + + +KA G E + ++V+E + G E T
Sbjct: 119 DIDSYPVVIKPALEGSSVGIFFCHNR-EEAEKAAG---ELVGKKIVIEEMIT-GDELTVG 173
Query: 94 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
V++ G G G + + K+ ++Y KY V + P +
Sbjct: 174 VIN-GEGI-----------------GVLRIIPKNEFYDYESKYAEGGSV-HEYPAKIDKK 214
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 213
+ E A + LGL +R D F+ V+ F ++N +
Sbjct: 215 AYDEALENAVKVHNVLGLAGISRSD--FILKDDKVY----------------FLEVNTLP 256
Query: 214 GMEQTSFLFQQASKVGFSHSNILRTII 240
GM +TS + A+ G+++ +++R ++
Sbjct: 257 GMTKTSLIPDLATLKGYTYDDVVRIMV 283
>gi|443468299|ref|ZP_21058529.1| D-alanine--D-alanine ligase [Pseudomonas pseudoalcaligenes KF707]
gi|442897416|gb|ELS24358.1| D-alanine--D-alanine ligase [Pseudomonas pseudoalcaligenes KF707]
Length = 315
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 51 GIDVGDDLLQR--------LQAEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILA 102
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T N L GVL D R+ + L P++
Sbjct: 103 SALAMDKLRTKQLWNSLGLPTPRHGVLASEADCRQAANKLGFPLI--------------- 147
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ E L
Sbjct: 148 -VKPAHEGSSIGMAKVESVEAL 168
>gi|118581686|ref|YP_902936.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
gi|190359200|sp|A1AU58.1|DDL_PELPD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|118504396|gb|ABL00879.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
Length = 310
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 126/315 (40%), Gaps = 82/315 (26%)
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+A +LP+ L++E FIA+HG GEDG +Q LLE +PYTG GV+AS
Sbjct: 45 DVARDLPL--------VLSREGIGAAFIALHGRYGEDGCVQGLLELMAIPYTGSGVLASA 96
Query: 461 TCMDKVATSLALNHLADLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
M K+ + A G+LT RR E V + H L+ L L VKP
Sbjct: 97 LAMHKLYSKQA---FVSAGILTAPFHHFRRGER------VSLSH-LSFGL---PLVVKPV 143
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
++G S G++ + L VK F
Sbjct: 144 QEGSSVGISIVKEESQLAAAVKL---------------------------------AFRH 170
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
DEIL KG E+ VG++ M ++ + + E
Sbjct: 171 DDEILVEQ----------FIKGQ----EVQVGILDD-----RPMGAIEIVSRNEFYDFEA 211
Query: 640 KFQGGTGINLTPPPASI-MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLI 697
K+ G + P + EAL R+ L A +AL +SR+D V GE +
Sbjct: 212 KYTDGMAEHFFPARLEKGLYEEAL-----RVGLAAHHALGCRCYSRVDLLVT-PAGECYV 265
Query: 698 IEVNTVPGMTPSTVL 712
+EVNT+PGMT ++L
Sbjct: 266 LEVNTLPGMTALSLL 280
>gi|254383276|ref|ZP_04998629.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
gi|194342174|gb|EDX23140.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
Length = 385
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 120/293 (40%), Gaps = 73/293 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE G+PY G GV+AS K M +V TS LN L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELAGIPYVGSGVLASAVGQDKDYMKRVFTSFGLNVGPYLTV 181
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
++ R D + I+D E L +KPAR G S G+ ++ +D++
Sbjct: 182 RP--REWTRDADAARGRILDFAEE-----HGWPLFIKPARAGSSIGITKV---DDVSGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E ++ +++ +
Sbjct: 232 EAVREA--------------------------------------------QRHDPKIIVE 247
Query: 601 GNSRWVEITVGVI----GKCGSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPAS 655
R EI GV+ G S+ + +P V+ S D E K+ +GI PA
Sbjct: 248 ARLRGREIECGVLEFEDGPRASVPAEIPPVS---SHDFYDFEAKYIDSASGIV----PAP 300
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + + + +E A EG R D F+ D G +I E+NT+PG TP
Sbjct: 301 LTPEQTAEVRRLAVEAF-EAASCEGLVRADFFLTED-GTFVINEINTMPGFTP 351
>gi|110598234|ref|ZP_01386510.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
gi|110340149|gb|EAT58648.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
Length = 369
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 111/281 (39%), Gaps = 57/281 (20%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F+ +HG GEDG +Q L+ +PYTG GV+AS MDK T L +AD G+
Sbjct: 104 FLVLHGSYGEDGRIQGFLDTCAIPYTGCGVLASAVTMDKALTKLC---VADAGIAVAPGI 160
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
D L P D +H + L +KPA G S G+
Sbjct: 161 TLLSSDYLADP--DSFHTRIDREFEYPLFIKPANLGSSVGI------------------- 199
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
S+ H E+P L + D + ++ + GN++
Sbjct: 200 ---------SKVHNPAELP------LALKTACTLDTKILVEKAIKGREIEVAVLGNAQP- 243
Query: 607 EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCK 666
E++V CG ++ D E+K+ + PA I S +K +
Sbjct: 244 EVSV-----CGE---------IEPGSDFYDYEDKYIHNSAKTFI--PARIPSV-LQEKVR 286
Query: 667 QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ AL G SRID FV+ ++ +++ EVNT+PG T
Sbjct: 287 ELALRAFKALGCRGMSRIDFFVDEESKSIILNEVNTIPGFT 327
>gi|28900741|ref|NP_800396.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus RIMD
2210633]
gi|153838099|ref|ZP_01990766.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
gi|260365385|ref|ZP_05777927.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
gi|260877677|ref|ZP_05890032.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
gi|260896057|ref|ZP_05904553.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
gi|260902128|ref|ZP_05910523.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
gi|32699435|sp|Q87HS0.1|DDL_VIBPA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|28809187|dbj|BAC62229.1| D-alanine-D-alanine ligase [Vibrio parahaemolyticus RIMD 2210633]
gi|149748485|gb|EDM59344.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
gi|308088124|gb|EFO37819.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
gi|308090884|gb|EFO40579.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
gi|308109929|gb|EFO47469.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
gi|308112832|gb|EFO50372.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
Length = 329
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 114/295 (38%), Gaps = 63/295 (21%)
Query: 422 NQATVFIA--VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
NQ FI +HG GE G +QSL E G+PY G G AS +K+ + L + L
Sbjct: 71 NQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL---- 126
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK--TLCVKPARDGCSTGVARLCCAEDLT 537
D+ L T + H + K + VK AR G S G
Sbjct: 127 ------DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGC---------- 170
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
Y A ++ + + ++F + D++
Sbjct: 171 -YSVAEKQAIAKAVNDAFGYS------------------------------------DQV 193
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ + + E+ V G +H P + G S +EK+ + +LT A +
Sbjct: 194 LVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH-SLTEVEAKNL 252
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ E +DK + E + + L SRID F+ DN E+ + EVNT PGMTP ++
Sbjct: 253 TQEQIDKIRHASETVFKQMNLRHLSRIDFFLTEDN-EIYLNEVNTFPGMTPISMF 306
>gi|315502030|ref|YP_004080917.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
gi|315408649|gb|ADU06766.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
Length = 377
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 120/316 (37%), Gaps = 78/316 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE+ GVPY G G++AS MDKVA AL
Sbjct: 111 VFPVLHGPYGEDGVVQGLLESLGVPYVGCGILASAVGMDKVAMKRAL------------- 157
Query: 486 DVRRKEDLLKTPIV----DIWHELTSKLQC-----KTLCVKPARDGCSTGVARLCCAEDL 536
R ED+ TP V W + + L VKPAR G S G++R+ ++L
Sbjct: 158 ---RAEDVPTTPYVWFDEPTWRAASDPEKLVVGLRGPLFVKPARMGSSIGISRVADGDNL 214
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE D ++ Q
Sbjct: 215 ---IAAVEEAF-------------------------------RHDHVVLVEQGVTGR--- 237
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+ GV+G S + V V +G +K+ G + P P
Sbjct: 238 ----------ELECGVLGGWQPEASAVGEVRV--AGGWFDYRQKYFGDADPMIVPAP--- 282
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E ++ ++ A+ G +R+D + ++ + E+NT+PG T + + +
Sbjct: 283 LPDEVTERIRELSVRAFTAIGGWGLARVDFLYDETTSDLFVNELNTLPGFTAHS-MYPKV 341
Query: 717 LSEQPPMYPHQFFRKV 732
+E YP R V
Sbjct: 342 WAESGVAYPDVVDRLV 357
>gi|319791670|ref|YP_004153310.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
gi|315594133|gb|ADU35199.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
Length = 323
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 124/305 (40%), Gaps = 65/305 (21%)
Query: 411 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 470
S + ++L +E A F+ +HG GEDGT+Q LE G+PYTG GVMAS MDKV T
Sbjct: 50 SERDLVELKREGFARCFVVLHGRHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKR 109
Query: 471 --ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
+ L + + D + +E ++ P V L VKP R+G S GV
Sbjct: 110 IWQADGLPTPKYVRLAFDQQSREQIMVVPDV----------LGLPLIVKPPREGSSIGVT 159
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
++ +S+ + + ++ E F+E +
Sbjct: 160 KV----------------------EGYSQMQDAVTLSAKYDADVLCEEFIEGE------- 190
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
E+T V+G+ G +P V + + K+ T +
Sbjct: 191 ------------------EVTCAVLGQ-GLDARALPVVRIAAPEGAYDYQNKYF--TDVV 229
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + + E + QRI L A + L G+ R D + + + ++E+NT PGMT
Sbjct: 230 QYKCPSGLPADEEHE--IQRITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMT 287
Query: 708 PSTVL 712
+++
Sbjct: 288 SHSLV 292
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GSSIGVT G S + + D V+ E F+E G E T VL G
Sbjct: 145 LIVKPPREGSSIGVTKVEGY--SQMQDAVTLSAKYDADVLCEEFIE-GEEVTCAVL--GQ 199
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G D LP V + + ++Y+ KY T V Y P P + I+
Sbjct: 200 GLDARA---LPV---------VRIAAPEGAYDYQNKYF-TDVVQYKCPSGLPADEEHEIQ 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ LG + R D S F ++N GM S
Sbjct: 247 RITLAAYHTLGCRGWGRADVMIRASDRKPF----------------LLEMNTSPGMTSHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A G + + ++ A
Sbjct: 291 LVPMSARAAGIPYEELCLRVLASA 314
>gi|403238273|ref|ZP_10916859.1| D-alanyl-alanine synthetase A [Bacillus sp. 10403023]
Length = 361
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 137/323 (42%), Gaps = 66/323 (20%)
Query: 421 ENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
+N+A VF +HG GEDGT+Q LLE +PY G GV+AS MDKV + N
Sbjct: 90 QNEAIDVVFPLLHGPNGEDGTVQGLLELVNIPYVGNGVLASSAGMDKV---IMKNIFGQA 146
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
G+L + + + P + + ++ KL VKPA G S G+++ E L
Sbjct: 147 GLLQAKYVSYVRNEWKQNP-EEAYLKVEEKLGFPCF-VKPANLGSSVGISKATDRESLE- 203
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
KA EE + F R +I+I E +
Sbjct: 204 --KAFEEAFM------FDR------------KIIIEEAIIGR------------------ 225
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
EI +GV+G S++ + K+ D + K++ G + P + ++
Sbjct: 226 --------EIEIGVLGNDNPSCSVVGEIVPKK--DFYDYKAKYEDGDTALIIP---ADIT 272
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV--LIHQA 716
E + K AL G R D F+ + G+V+I EVNT+PG TP ++ L+ Q
Sbjct: 273 DEQYESVKTEAIKAFKALDCSGLVRADFFLTKE-GKVVINEVNTMPGFTPFSMFPLLWQ- 330
Query: 717 LSEQPPMYPHQFFRKVLDLGSER 739
E YP + K+++L ER
Sbjct: 331 --EAGVSYP-ELIEKLVELAIER 350
>gi|390942937|ref|YP_006406698.1| D-alanine--D-alanine ligase [Belliella baltica DSM 15883]
gi|390416365|gb|AFL83943.1| D-alanine--D-alanine ligase [Belliella baltica DSM 15883]
Length = 328
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 117/295 (39%), Gaps = 70/295 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 480
VF +HG GEDG L + +PYT M S M+K T ++ + +L V
Sbjct: 78 VFNILHGSPGEDGKLAGYFDMLKIPYTTCDAMTSAITMNKGYTKAIVHDIPELFVARSFH 137
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
L N + RRKE I H+L L VKP G S G+ ++ +L
Sbjct: 138 LFKNTEERRKE---------ILHDLRL-----PLFVKPNNGGSSIGMTKVKDPSEL---- 179
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
EE L R F E ++L + +
Sbjct: 180 ---EEALAR--------------------------AFAEDAQVLVEEFVSGR-------- 202
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
E ++G+ G + +++P+ + S + E K+ G +TP MS E
Sbjct: 203 ------EFSIGIYCAKG-ITTVLPATEIVSSKEFFDFEAKYSPGIAEEITP---GRMSEE 252
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+ + K+ E I L +G R+D F+ + G+ IE+NTVPG T ++++ Q
Sbjct: 253 EVSRVKRICEKIYLKLNCKGAVRVDYFLENETGKFYFIEINTVPGQTETSLISQQ 307
>gi|326315572|ref|YP_004233244.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323372408|gb|ADX44677.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 335
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 122/305 (40%), Gaps = 79/305 (25%)
Query: 411 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 470
S ++ +L A FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 57 SQSDLSELKSHGYARCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-- 114
Query: 471 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDG 522
K + R E L P D W ++S + + VKP+R+G
Sbjct: 115 --------------KRIWRFEGL---PTPD-WRLVSSAAETAQALKDLGSPMIVKPSREG 156
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
+ G+ ++ P +A+ + + PE+L E F++ +
Sbjct: 157 STIGLTKV-------------------TSPGQCEQAYRLASRYD--PEVLC-EQFIDGE- 193
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
E T V+G+ H+L V G+ + F
Sbjct: 194 ------------------------ETTCPVLGQGAGAHALPVIRIVAPEGNYDYQNKYF- 228
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
T + P+ + E + + +E LQ G++R D + + + ++E+NT
Sbjct: 229 --TDVTQYHCPSGLPEQEEREIRRLVVEAF-RTLQCRGWARADIMIRASDRKPFLLEINT 285
Query: 703 VPGMT 707
PGMT
Sbjct: 286 SPGMT 290
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 78/205 (38%), Gaps = 39/205 (19%)
Query: 40 VVVKPTRAGSSIGVT--VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 97
++VKP+R GS+IG+T + G + + + D V+ E F++ G E T VL
Sbjct: 148 MIVKPSREGSTIGLTKVTSPGQCEQAYR----LASRYDPEVLCEQFID-GEETTCPVLGQ 202
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G+G PV + + + ++Y+ KY T YH P P
Sbjct: 203 GAGAHALPV--------------IRIVAPEGNYDYQNKYF-TDVTQYHCPSGLPEQEERE 247
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
IR F+ L +AR D S F +IN GM
Sbjct: 248 IRRLVVEAFRTLQCRGWARADIMIRASDRKPF----------------LLEINTSPGMTG 291
Query: 218 TSFLFQQASKVGFSHSNI-LRTIIG 241
S + A +G S+ + LR + G
Sbjct: 292 HSLVPMSARAMGVSYEELCLRILAG 316
>gi|291437043|ref|ZP_06576433.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
gi|291339938|gb|EFE66894.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
Length = 385
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 119/291 (40%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLK--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ +R E + IVD E L VKPAR G S G+ ++ +DL+
Sbjct: 180 VIRPREWQRDESAARKKIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DDLSGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
A+ E ++ +++ +
Sbjct: 232 GAIAEA--------------------------------------------QRHDPKILVE 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + ++ E K+ I+ TP PA +
Sbjct: 248 AALRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + + +E A EG R D F+ ++G+ +I E+NT+PG TP
Sbjct: 303 EEETAEVRRLAVEAF-EAASCEGLVRADFFLT-EDGDFVINEINTMPGFTP 351
>gi|121611481|ref|YP_999288.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
gi|190359218|sp|A1WRL3.1|DDL_VEREI RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|121556121|gb|ABM60270.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
Length = 331
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 124/304 (40%), Gaps = 79/304 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E A FIA+HG GEDGT+Q LE G+ YTG GVMAS +DK
Sbjct: 61 LKREGYARCFIALHGRHGEDGTVQGALELLGIAYTGSGVMASSMALDK------------ 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVAR 529
T++K + R E L P D W +TS + + VKPAR+G + G+++
Sbjct: 109 ----TMSKRIWRSEGL---PTPD-WRLVTSGAEAGQALQTLGAPMIVKPAREGSTIGLSK 160
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
V ++C A + PE+L E F+ DE+
Sbjct: 161 ----------VHQAQQC-----------ASAYLLAARYDPEVLC-EQFIAGDEL------ 192
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
TV G+ S +L V G+ + F T +
Sbjct: 193 -----------------TCTVLDQGRRASAQALPLIRIVAPDGNYDYQHKYFSDATRYHC 235
Query: 650 TPPPASIMSTEALDKCKQRI-ELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
P+ + EA ++ R+ E +AL G++R D + + + ++E+NT PGMT
Sbjct: 236 ---PSGL--PEAQERAIGRLAEQAFSALGCRGWARADIMLRASDQQPFLLEINTAPGMTD 290
Query: 709 STVL 712
+++
Sbjct: 291 HSLV 294
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 82/224 (36%), Gaps = 42/224 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-IDDRVVVELFLEGGSEFTAIVLDVG 98
++VKP R GS+IG++ V + + A +L D V+ E F+ G E T VLD G
Sbjct: 145 MIVKPAREGSTIGLSK---VHQAQQCASAYLLAARYDPEVLCEQFI-AGDELTCTVLDQG 200
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ L + + D ++Y+ KY + YH P P +I
Sbjct: 201 RRASAQALPL------------IRIVAPDGNYDYQHKYF-SDATRYHCPSGLPEAQERAI 247
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
A F LG +AR D S F +IN GM
Sbjct: 248 GRLAEQAFSALGCRGWARADIMLRASDQQPF----------------LLEINTAPGMTDH 291
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPG 262
S + A G S+ ++ C R +A+ ++ L G
Sbjct: 292 SLVPMSARAAGISYEDL--------CLRLLAMATLDTPPGALSG 327
>gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
gi|20137662|sp|Q9KCF0.1|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
Length = 305
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 113/291 (38%), Gaps = 74/291 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FI +HG +GEDG +Q+LL+ +PY G GV S MDK L
Sbjct: 57 FIGLHGRLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFE----------KAG 106
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQC------KTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+R E++ + H T + VKP ++G + G L AE
Sbjct: 107 IRVAEEV-------VLHSFTYDANAFNFTGTYPVVVKPNQEGSTIG---LTVAE------ 150
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
EE LL+ +F + ++ E F+
Sbjct: 151 --TEEELLQGIEEAFRH-----------DDTILIEEFI---------------------- 175
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
E+TV V+G G SL P V + + E K+ G ++ P S T
Sbjct: 176 ---AGTEVTVAVLGNKGEERSL-PVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTA 231
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ + R AL + +SR+D V D + +I++VNT+PGMTP+++
Sbjct: 232 YVQQAAVRAH---QALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSL 279
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 48/208 (23%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI------DDRVVVELFLEGGSEFTAI 93
VVVKP + GS+IG+TVA + + +L+GI DD +++E F+ G+E T
Sbjct: 133 VVVKPNQEGSTIGLTVA--------ETEEELLQGIEEAFRHDDTILIEEFI-AGTEVTVA 183
Query: 94 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
VL PV V++ K+ +++Y KY P + P R
Sbjct: 184 VLGNKGEERSLPV--------------VEIVPKNKLYDYESKYAPGMS-EHIVPARISEE 228
Query: 154 VINSIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 212
+++ A Q LG CD ++R+D + +P+ GS + +N +
Sbjct: 229 HTAYVQQAAVRAHQALG-CDVYSRVD-FIVPND-----------GSDP----VILKVNTL 271
Query: 213 SGMEQTSFLFQQASKVGFSHSNILRTII 240
GM TS A VG S+ +++T +
Sbjct: 272 PGMTPTSLYPDAAKGVGMSYEEMIQTFV 299
>gi|406668914|ref|ZP_11076205.1| D-alanine-D-alanine ligase [Facklamia ignava CCUG 37419]
gi|405585195|gb|EKB59030.1| D-alanine-D-alanine ligase [Facklamia ignava CCUG 37419]
Length = 361
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 118/295 (40%), Gaps = 74/295 (25%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
+ A VF +HG GEDGT+Q LE G+PY G GV AS MDK+ T +H+ V
Sbjct: 92 QEDAIVFPVLHGPNGEDGTIQGFLETLGLPYVGAGVCASACGMDKIITKQLFDHVGIPQV 151
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------LCVKPARDGCSTGVARLCCA 533
I D R W+E L K L VKPA G S G++R+
Sbjct: 152 PYIAFDRRE------------WNEDPDALINKAEGSLLYPLFVKPANMGSSVGISRV--- 196
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
ED V+A+ L E D + Q N +
Sbjct: 197 EDSEALVQAINLAL-------------------------------EYDHRIVVEQGINAD 225
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
EI V V+G + S++ + + EEK+ T +++ P
Sbjct: 226 -------------EIEVAVLGNDDAHVSVVGRLV--KGASFYDYEEKYINNT-VDME-IP 268
Query: 654 ASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
A+I E+L + L A A+ G +R+D F+ N +V I E+NT+PG T
Sbjct: 269 ANI--EESLSDTIREYALKAYRAIDGSGLARVDFFLT-SNDDVYINEINTMPGFT 320
>gi|420369590|ref|ZP_14870283.1| D-alanine--D-alanine ligase B [Shigella flexneri 1235-66]
gi|391321157|gb|EIQ77912.1| D-alanine--D-alanine ligase B [Shigella flexneri 1235-66]
Length = 306
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 127/292 (43%), Gaps = 71/292 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGVLEQIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R + + + +E +K+ L VKP+R+G S G+++ +
Sbjct: 117 LTRTEFE------KGLSNESVTKISALGLPLIVKPSREGSSVGMSK-------------V 157
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
EE N+ A + F +E+L
Sbjct: 158 EE------ENALQGALAL--------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++G+ ++PS+ ++ +G E K+ P + + E
Sbjct: 181 KWLSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCP---AGLEVE 232
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ ++ + AL +G+ RID ++ D+ + ++E NT PGMT +++
Sbjct: 233 QETRLQELVLKAWTALGCKGWGRIDVMLDSDD-QFYLLEANTSPGMTSHSLV 283
>gi|284008382|emb|CBA74791.1| D-alanine--D-alanine ligase [Arsenophonus nasoniae]
Length = 300
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 137/324 (42%), Gaps = 71/324 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
IKL + VFIA+HG GEDGT+Q +LE G+PYTG GV+AS MDK+ T
Sbjct: 42 IKLKEAGYNKVFIALHGRGGEDGTVQGVLEFLGLPYTGSGVLASSLSMDKLRTK---QLW 98
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A +G L I + + L ++ E L L VKP+ +G S G++++ +
Sbjct: 99 AGIG-LPIAPYIALDKQQLAMMSDEMLFESVCHLGL-PLIVKPSLEGSSVGMSKVTTLSE 156
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L + ALE F + D ++
Sbjct: 157 LRI---ALE-----------------------------FAFRYDKDVLI----------- 173
Query: 596 RLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
+W+ E TV ++G+ ++PS+ ++ G + K+ P
Sbjct: 174 -------EKWLNGPEYTVAIVGE-----QVLPSIRIQPVGVFYDYDAKYLSNETQYFCPS 221
Query: 653 PASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
E L+K + L A A+ G+ R+D + ++G ++E+NT PGMT ++
Sbjct: 222 GLKAEEEEQLNK----LALAAYKAVGCAGWGRVDVMRD-NDGVFYLLEINTSPGMTGHSL 276
Query: 712 LIHQALSEQPPMYPHQFFRKVLDL 735
+ A +Q M Q +K+L+L
Sbjct: 277 VPMAA--KQAGMTFSQLVKKILEL 298
>gi|238755653|ref|ZP_04616989.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
gi|238706166|gb|EEP98547.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
Length = 363
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 118/285 (41%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L A L + +T
Sbjct: 97 VFPIVHGTLGEDGSLQGLLRMANMPFVGSGVVGSAASMDKDVTKRLLRD-AGLNIAPFIT 155
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + + + KL L +KPA G S GV+++C AE+ T V+
Sbjct: 156 LTRANREQYG---------FEPVREKLGLP-LFIKPANQGSSVGVSKVCSAEEFTAAVEL 205
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+FS H ++L S +
Sbjct: 206 -----------AFSFDH----------------------KVLVESAIVGR---------- 222
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G SL V + S + S + K+ +G + P +++ +
Sbjct: 223 ----EIECAVLGNDQPKASLCGEVVI--SDEFYSYDTKYISDSGAQVVIP--AVLDAQVS 274
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
D+ + L+ G +R+D F+ DN +++I E+NT+PG T
Sbjct: 275 DRIRAVAVEAFRTLECLGMARVDVFLTPDN-KIIINEINTLPGFT 318
>gi|194439412|ref|ZP_03071489.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
gi|422792742|ref|ZP_16845441.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
gi|442597894|ref|ZP_21015672.1| D-alanine--D-alanine ligase B [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|194421671|gb|EDX37681.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
gi|323970764|gb|EGB66018.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
gi|441653559|emb|CCQ03888.1| D-alanine--D-alanine ligase B [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 306
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 139/316 (43%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL--TI 483
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVV 116
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
++ L + +I S L + VKP+R+G S G++++ V AL
Sbjct: 117 LTRAEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-------VAENAL 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
++ LR+ F +E+L
Sbjct: 164 QDA-LRL-------------------------AFQHDEEVLI-----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV ++ + ++PS+ ++ SG E K+ PA + +++
Sbjct: 181 KWLSGPEFTVAILDE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ 233
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 234 --EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 289 QAGMSFSQLVVRILEL 304
>gi|416285062|ref|ZP_11647602.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905]
gi|320179654|gb|EFW54603.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905]
Length = 306
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 137/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G+ ++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMTKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|407791111|ref|ZP_11138199.1| D-alanine--D-alanine ligase [Gallaecimonas xiamenensis 3-C-1]
gi|407201449|gb|EKE71449.1| D-alanine--D-alanine ligase [Gallaecimonas xiamenensis 3-C-1]
Length = 299
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 116/306 (37%), Gaps = 89/306 (29%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L ++ VFIA+HG GEDGT+Q LE +PYTG V+ S MDKV T L
Sbjct: 49 LHRDGFDKVFIALHGRGGEDGTVQGALEWLQIPYTGSRVLGSALAMDKVRTKQIWQSLG- 107
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIW--------HELTSKLQCKTLCVKPARDGCSTGVAR 529
P D W +L + + + VKP+R+G S G+ +
Sbjct: 108 ------------------LPTADFWIIHKGLLDDQLAADIMTGPVMVKPSREGSSIGMKK 149
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
++L V E D+++
Sbjct: 150 ASTVQELKDAVAEAEAL----------------------------------DDVVLV--- 172
Query: 590 TNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG 646
RW+ E TVG++ +P + +K + K++ T
Sbjct: 173 -------------ERWISGPEFTVGILDG-----QPLPVIQMKTPNGFYDYDAKYKSNTT 214
Query: 647 INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706
L P EAL + +A+ EG+ R+DA ++ ++G+ ++EVNTVPGM
Sbjct: 215 QYLIPCGLPADQEEALKAMALK---AFDAVGAEGWGRVDAMLD-EHGQFQLLEVNTVPGM 270
Query: 707 TPSTVL 712
T +++
Sbjct: 271 TEKSLV 276
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 34 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 93
D +G V+VKP+R GSSIG+ A + LK A E +DD V+VE ++ G EFT
Sbjct: 128 DIMTGPVMVKPSREGSSIGMKKA-STVQELKDAVAEA-EALDDVVLVERWIS-GPEFTVG 184
Query: 94 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
+L D P LP + ++ + ++Y KY + Y P P
Sbjct: 185 IL------DGQP---LPV---------IQMKTPNGFYDYDAKY-KSNTTQYLIPCGLPAD 225
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 213
+++ A F +G + R+D E G ++N +
Sbjct: 226 QEEALKAMALKAFDAVGAEGWGRVDAML-----------------DEHGQFQLLEVNTVP 268
Query: 214 GMEQTSFLFQQASKVGFSHSNILRTIIGHA 243
GM + S + + A+ G S ++ I+ A
Sbjct: 269 GMTEKSLVPKAAAATGLDFSTLVCRILAAA 298
>gi|83748768|ref|ZP_00945783.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
gi|207744399|ref|YP_002260791.1| d-alanine--d-alanine ligase (d-alanylalanine
synthetase)(d-ala-d-ala ligase) protein [Ralstonia
solanacearum IPO1609]
gi|386332335|ref|YP_006028504.1| d-alanine--d-alanine ligase (d-alanylalanine
synthetase)(d-ala-d-ala ligase) protein [Ralstonia
solanacearum Po82]
gi|421895496|ref|ZP_16325897.1| d-alanine--d-alanine ligase (d-alanylalanine
synthetase)(d-ala-d-ala ligase) protein [Ralstonia
solanacearum MolK2]
gi|83724589|gb|EAP71752.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
gi|206586661|emb|CAQ17247.1| d-alanine--d-alanine ligase (d-alanylalanine
synthetase)(d-ala-d-ala ligase) protein [Ralstonia
solanacearum MolK2]
gi|206595804|emb|CAQ62731.1| d-alanine--d-alanine ligase (d-alanylalanine
synthetase)(d-ala-d-ala ligase) protein [Ralstonia
solanacearum IPO1609]
gi|334194783|gb|AEG67968.1| d-alanine--d-alanine ligase (d-alanylalanine
synthetase)(d-ala-d-ala ligase) protein [Ralstonia
solanacearum Po82]
Length = 331
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 117/308 (37%), Gaps = 71/308 (23%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P +LA + V I++HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 51 DAHPFDPGTQPVAELATQGFHRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAM 110
Query: 464 DKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK AT L H D +L D + D L P++ VKPA
Sbjct: 111 DKEATKRLWQTHGLPTPDFVMLHAGADWQAVADRLGLPLI----------------VKPA 154
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R+G S G+ ++ L P ++ RA + ++ E F+E
Sbjct: 155 REGSSIGLTKVTSVAGL---------------PAAYERAARL-------DRDVMAEQFIE 192
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D E+T VIG+ G + +P + + +
Sbjct: 193 GD-------------------------ELTCAVIGE-GDSTTALPLIRIVAPQANYDYQH 226
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 699
K+ P P + E + + + +L G+ R D + + ++E
Sbjct: 227 KYFTDDTRYECPAP---IPAEVAARVQALVVQAYRSLGCRGWGRADIMLRKHDNAPFLLE 283
Query: 700 VNTVPGMT 707
+NT PGMT
Sbjct: 284 MNTSPGMT 291
>gi|451966183|ref|ZP_21919437.1| D-alanine--D-alanine ligase [Edwardsiella tarda NBRC 105688]
gi|451314962|dbj|GAC64799.1| D-alanine--D-alanine ligase [Edwardsiella tarda NBRC 105688]
Length = 368
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 119/287 (41%), Gaps = 70/287 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 480
+F VHG GEDG LQ +L+ +P+ G ++ S CMDK + L D G+
Sbjct: 103 IFPIVHGTQGEDGCLQGMLKILNLPFVGSDIIGSAACMDK---DICKRLLRDAGLPVTPF 159
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+T+ +D + D +E S+ TL VKPA G S GV+++ AE+ Y
Sbjct: 160 VTLTRDTQADYD----------YETLSRQLGSTLFVKPANQGSSVGVSKVRNAEE---YA 206
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E L F+ +K L
Sbjct: 207 RAI-------------------------AEALRFD---------------HKVIIELGVV 226
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G EI ++G + S+ + + D S + K+ G + P M+ E
Sbjct: 227 GR----EIECAILGNEAAQASVCGEIILHS--DFYSYDSKYISAQGAQVVVPAQ--MTPE 278
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ +Q AL+ G +R+D F+ + GEV+I E+NT+PG T
Sbjct: 279 SSERVRQIALQAFQALECRGLARVDVFLT-EEGEVIINEINTLPGFT 324
>gi|356668607|gb|AET35504.1| D-alanine--D-alanine ligase [uncultured bacterium]
Length = 352
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 127/315 (40%), Gaps = 59/315 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + +N +LG+ +
Sbjct: 97 VFPVLHGLHGEDGTIQGLLELARIPYVGCGVLASAVGMDKLYTKIIVN---NLGIRQADY 153
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ E L +D K + +KP+ G S GV++ E+L
Sbjct: 154 EPVMSEQLAD---MDAVIARVEKHFSYPVFIKPSNAGSSKGVSKAENREELE-------- 202
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+G+ E N +IL+ E V R
Sbjct: 203 -------------NGLKEAANHDRKILVEEMIV------------------------GRE 225
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
+E V GK S + + + D + K+ +T P + A ++
Sbjct: 226 IECAVFGGGKEEVKASGVGEILA--AADFYDFDAKYYNAESKTVTDPE---LPGNAAEEV 280
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
++ I A+ G SR+D FV D GE++ E+NT+PG T + ++ L E +
Sbjct: 281 RKAAAAIFKAVDGYGLSRVDFFVKED-GEIVFNEINTMPGFT--AISMYPMLWEARGINK 337
Query: 726 HQFFRKVLDLGSERF 740
+ K++ ERF
Sbjct: 338 EELVDKLMSHALERF 352
>gi|332288550|ref|YP_004419402.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
gi|330431446|gb|AEC16505.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
Length = 311
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 132/324 (40%), Gaps = 72/324 (22%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--L 475
L K+ VF +HG GEDG+LQ LLE G+PYTG GVM+S MDK+ T L L
Sbjct: 57 LKKQGFQRVFNILHGRGGEDGSLQGLLEQLGIPYTGCGVMSSALTMDKMRTKLLWKAVGL 116
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
++ I K+ R + D + +KL L VKP+ +G S G+ ++ E+
Sbjct: 117 PVAEMVVITKETRSQLDA---------QAVVAKLGL-PLMVKPSLEGSSVGLTKVKKVEE 166
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L V D +L
Sbjct: 167 LAAAVDT---------------------------------ALTHDDTVLIEE-------- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
W E +V V+G ++PS+ +K +G+ + K+ + P S
Sbjct: 186 ---WLAGQ---EFSVPVLG-----GKVLPSILIKPAGEFYDYDAKYLLDSTQYFCP---S 231
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E ++ + ++ + + G+SRID + G ++EVNT PGMT ++
Sbjct: 232 GLSEERENELRNLVKQAYDIVGCRGWSRIDVMTDA-QGRFRLVEVNTNPGMTSHSLF--- 287
Query: 716 ALSEQPPMYP-HQFFRKVLDLGSE 738
++ + Y Q K+L+L +E
Sbjct: 288 PMAAKVVGYSFSQLVVKILELSAE 311
>gi|148265982|ref|YP_001232688.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
gi|190359135|sp|A5G8J7.1|DDL_GEOUR RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|146399482|gb|ABQ28115.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
Length = 310
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 122/301 (40%), Gaps = 75/301 (24%)
Query: 412 INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA 471
+ EW+ +A FIA+HG GEDG +Q LLE G+PYTG GV+AS M+K+ A
Sbjct: 57 VREWVDVA-------FIALHGRYGEDGAIQGLLEIMGIPYTGSGVLASALAMNKIFAKQA 109
Query: 472 LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 531
A L V R K + ++ L + VKP+++G S GV+
Sbjct: 110 FQA-ARLTVAPYKVFCRGD----KAALAELEFSL-------PVVVKPSQEGSSVGVS--- 154
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
I A M E EIL+ E F+
Sbjct: 155 ------------------IVKKESEFAAAMKEAFRYDREILV-EQFI------------- 182
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
KG+ E+ VG++ + ++ + + + K+ G ++ P
Sbjct: 183 --------KGS----EVQVGIL-----EDKALGAIEIVPKNEFYDFDAKYSPGMAEHILP 225
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ + E K + E AL G+SR+D F+ + G I+EVNT+PGMT ++
Sbjct: 226 ---ARLPAELYRKVLRAGEDAHRALGCSGYSRVD-FLVTEEGACYILEVNTLPGMTDLSL 281
Query: 712 L 712
L
Sbjct: 282 L 282
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 45/208 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
VVVKP++ GSS+GV+ ++ + + E D ++VE F++G I+ D
Sbjct: 140 VVVKPSQEGSSVGVS----IVKKESEFAAAMKEAFRYDREILVEQFIKGSEVQVGILED- 194
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVIN 156
+ G++++ K+ +++ KY P +A H P R P +
Sbjct: 195 ------------------KALGAIEIVPKNEFYDFDAKYSPG--MAEHILPARLPAELYR 234
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+ + LG ++R+D FL TE G ++N + GM
Sbjct: 235 KVLRAGEDAHRALGCSGYSRVD--FL---------------VTEEGACYILEVNTLPGMT 277
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHAC 244
S L + A G +++ I+ A
Sbjct: 278 DLSLLPEIARGSGIGFEDLVERILAAAA 305
>gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20]
Length = 388
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 125/307 (40%), Gaps = 70/307 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V +HG GEDGT+Q +LE G+PY G GV+AS MDK T + L G+ T
Sbjct: 121 VLPLLHGPYGEDGTIQGMLEMMGIPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 177
Query: 486 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + P I++ LT L VKPAR G S G++++ EDL +KA
Sbjct: 178 VVVGPHAWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDLAGAIKA- 231
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+RA P++L+ V + + Q +A R+ G
Sbjct: 232 ------------ARAVD--------PKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 269
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL- 662
EI + + +G+ E K+ + + P AL
Sbjct: 270 ---EIAMD---------------ASQGAGEFYDYETKYLAHDAVAMVCPARIDPEARALL 311
Query: 663 -DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
D + E AL EG +R+D F+ + GE ++ E+NT+PG TP +
Sbjct: 312 MDTAARAFE----ALGCEGLARVDFFLT-EAGEAVVNEINTMPGFTPFS----------- 355
Query: 722 PMYPHQF 728
MYP+ +
Sbjct: 356 -MYPYMW 361
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VKP RAGSS+G++ +D + G I +D +V+VE + G E VL G
Sbjct: 205 VKPARAGSSLGISK----VDRPEDLAGAIKAARAVDPKVLVESGIVG-REVEVAVLQ-GR 258
Query: 100 GFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D P V P E+ + QG+ + ++Y KYL VA P R +
Sbjct: 259 GDDA-PRVAEPGEIAMDASQGAGE------FYDYETKYLAHDAVAMVCPARIDPEARALL 311
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A+ F+ LG AR+D +FL TE G + +IN + G
Sbjct: 312 MDTAARAFEALGCEGLARVD-FFL----------------TEAGEAVVNEINTMPGFTPF 354
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSR 246
S G ++ ++ +I A +R
Sbjct: 355 SMYPYMWQVSGLGYTELVSELIELAVAR 382
>gi|302554392|ref|ZP_07306734.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
40736]
gi|302472010|gb|EFL35103.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
40736]
Length = 385
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 119/291 (40%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYLVV 181
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
++ R+ E + IVD + L VKPAR G S G+ ++ +DL
Sbjct: 182 RP--REWRQDEQAARKRIVDFAGD-----HGWPLFVKPARAGSSIGITKV---DDLAGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E ++ +++ +
Sbjct: 232 EAIAEA--------------------------------------------QRHDPKILVE 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + ++ E K+ I+ TP PA +
Sbjct: 248 AALRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + + +E A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 303 PEETAEVQRLAVEAF-EAASCEGLVRADFFLT-EDGEFVINEINTMPGFTP 351
>gi|373499301|ref|ZP_09589791.1| D-alanine-D-alanine ligase [Fusobacterium sp. 12_1B]
gi|371959142|gb|EHO76836.1| D-alanine-D-alanine ligase [Fusobacterium sp. 12_1B]
Length = 288
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 121/307 (39%), Gaps = 90/307 (29%)
Query: 416 IKLAKENQATVFI---------AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
I + KEN + F+ A HGG GEDG +Q LL+ G PYTG G AS MDKV
Sbjct: 38 IDVTKENLVSAFVDNEYDFAYLAFHGGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKV 97
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
T LA+ + + K+ + D+ P+V +KPA +G S G
Sbjct: 98 IT----KKLAESAGVRVAKNYDKVSDIDSYPVV----------------IKPALEGSSVG 137
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
+ C H E E++ + +E
Sbjct: 138 I--FFC--------------------------HNREEAEKAAGELVGKKIVIEE------ 163
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
M G+ E+TVGVI G+ + ++P + E K+ G
Sbjct: 164 -----------MITGD----ELTVGVINGEGIGVLRIIP------KNEFYDYESKYAEGG 202
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
++ P + +A D+ + + N L L G SR D + D +V +EVNT+PG
Sbjct: 203 SVHEYPAK---IDKKAYDEALENAVKVHNVLGLAGISRSDFILKDD--KVYFLEVNTLPG 257
Query: 706 MTPSTVL 712
MT ++++
Sbjct: 258 MTKTSLI 264
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 42/207 (20%)
Query: 34 DPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAI 93
D +S VV+KP GSS+G+ + + +KA G E + ++V+E + G E T
Sbjct: 119 DIDSYPVVIKPALEGSSVGIFFCHNR-EEAEKAAG---ELVGKKIVIEEMIT-GDELTVG 173
Query: 94 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
V++ G G G + + K+ ++Y KY V + P +
Sbjct: 174 VIN-GEGI-----------------GVLRIIPKNEFYDYESKYAEGGSV-HEYPAKIDKK 214
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 213
+ E A + LGL +R D F+ V+ F ++N +
Sbjct: 215 AYDEALENAVKVHNVLGLAGISRSD--FILKDDKVY----------------FLEVNTLP 256
Query: 214 GMEQTSFLFQQASKVGFSHSNILRTII 240
GM +TS + A+ G+++ +++R ++
Sbjct: 257 GMTKTSLIPDLATLKGYTYDDVVRIMV 283
>gi|333901746|ref|YP_004475619.1| D-alanine--D-alanine ligase [Pseudomonas fulva 12-X]
gi|333117011|gb|AEF23525.1| D-alanine--D-alanine ligase [Pseudomonas fulva 12-X]
Length = 316
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 66/136 (48%), Gaps = 28/136 (20%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+ R S NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 52 GIDVGDDFLARLS-NEKIDRA-------FIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 103
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L VL+ D RR D L P++
Sbjct: 104 SALAMDKLRTKQVWQSLGLSTPRHAVLSSADDCRRAADELGFPLI--------------- 148
Query: 515 CVKPARDGCSTGVARL 530
VKPA +G S G+A++
Sbjct: 149 -VKPAHEGSSIGMAKV 163
>gi|329936757|ref|ZP_08286464.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
gi|329303987|gb|EGG47870.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
Length = 385
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 120/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLK--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ R + IVD E L VKPAR G S G+ ++ + L
Sbjct: 180 VIRPREWERDRSAARKRIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DGLAGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+EE +R H P+IL+ +
Sbjct: 232 EAIEE----------ARRHD--------PKILV--------------------------E 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + ++ E K+ I+ TP PA +
Sbjct: 248 AELRGREIECGVLEFEEGPRASVPAEIPPPDTHAYYDFEAKY-----IDSTPGLVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ E + + +E A EG R D F+ + GE +I E+NT+PG TP
Sbjct: 303 AEETAEVRRLAVEAF-EAASCEGLVRADFFLT-EEGEFVINEINTMPGFTP 351
>gi|114566682|ref|YP_753836.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|122318278|sp|Q0AXT9.1|DDL_SYNWW RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|114337617|gb|ABI68465.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 309
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 137/332 (41%), Gaps = 74/332 (22%)
Query: 389 EGLKKHSW-FTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAE 447
EGLK + D E H I E+ + VFI +HG GEDGT+Q LE
Sbjct: 27 EGLKDAGYEVEALDFTPE--TIHRIREY------SPDVVFITLHGKNGEDGTVQGYLELL 78
Query: 448 GVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH-ELT 506
G+PYTG GV+AS CM+KV T L++ G+ T + V +K + D+++ +L
Sbjct: 79 GIPYTGSGVLASAVCMNKVITKKLLSY---EGLPTADFQVIKKRGFNR----DLFNPDLL 131
Query: 507 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 566
+ L VKPA G S G + + +++ V ALE L S
Sbjct: 132 MEDFGLPLVVKPATQGSSVGTSIVRKRKNI---VPALELAL------SLDE--------- 173
Query: 567 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 626
EIL+ E F+ E+TV V+GK +P +
Sbjct: 174 ---EILV-EKFIA-------------------------GTELTVTVLGK--DNLKTLPVI 202
Query: 627 TVKESGDILSLEEKFQGGTGINLTPP--PASIMSTEALDKCKQRIELIANALQLEGFSRI 684
+ + E K+ G +L P CK +A+ G+ RI
Sbjct: 203 EIVPKNEYYDYESKYMPGMSDHLIPARISEEERERVEEISCKAY-----DAVGCRGYGRI 257
Query: 685 DAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
D ++ G I+E+NT+PGMT ++++ A
Sbjct: 258 DLILD-RGGNPYILEINTLPGMTGTSLVPDAA 288
>gi|238760617|ref|ZP_04621746.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
gi|238701177|gb|EEP93765.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
Length = 249
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 120/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+FIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L I+
Sbjct: 1 MFIALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQASG----LPISP 56
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V T + ++L L VKP+R+G S G++++
Sbjct: 57 YVALNRQQFATLSPEALAAAVAQLGLP-LIVKPSREGSSVGMSKV--------------- 100
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ S H + E F ++L +W
Sbjct: 101 -------DKMSGLHDA-----------LVEAFRHDSDVLI-----------------EKW 125
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G ++PS+ ++ G E K+ P S +S+E L
Sbjct: 126 LSGPEFTVAIVGD-----DVLPSIRIQAPGVFYDYEAKYLSDKTQYFCP---SGLSSE-L 176
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ + L A AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 177 EQQLATLALQAYQALDCSGWGRVDVMQDSD-GSFYLLEVNTSPGMTSHSLV 226
>gi|119513697|ref|ZP_01632695.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
gi|119461646|gb|EAW42685.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
Length = 355
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 136/333 (40%), Gaps = 63/333 (18%)
Query: 411 SINEWIKLAKENQATV-FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 469
++N W + Q + F +HG GEDGT+Q LL VP+ G GV+ S MDK+A
Sbjct: 74 NLNRWKLPEQVTQVDIWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSALGMDKIAMK 133
Query: 470 LALNHLADLGVLTINKDVRRKEDLLKTPIV--DIWHELTSKLQCKTLCVKPARDGCSTGV 527
+A G+ + + ++ P V + E+ + L VKPA G S G+
Sbjct: 134 MAFEQ---AGLPQVKYKALTRAEVWSNPCVFPKLCDEIEAALDYPCF-VKPANLGSSVGI 189
Query: 528 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS 587
A++ ++L AL+ ++ R
Sbjct: 190 AKVRSRQELEA---ALDNA------ATYDR------------------------------ 210
Query: 588 QSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI 647
R++ + E+ V+G + S++ +T + D E K+ G
Sbjct: 211 --------RIIVEAGVVAREVECAVLGNDQTKASIVGEITF--NSDFYDYETKYTVGQAD 260
Query: 648 NLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706
L P P +A+ + Q + L A A+ G +R+D F GE+LI E+NT PG
Sbjct: 261 LLIPAPIP----DAVSRQIQDMALQAFAAVDAAGLARVDFFFVEATGEILINEINTFPGF 316
Query: 707 TPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
T +T + Q +E +P + +++ LG ER
Sbjct: 317 T-ATSMYPQLWAESGIPFP-ELVDRLIQLGLER 347
>gi|89902192|ref|YP_524663.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
gi|123091124|sp|Q21SX1.1|DDL_RHOFD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|89346929|gb|ABD71132.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
Length = 346
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 127/305 (41%), Gaps = 81/305 (26%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L E + FIA+HG GEDGT+Q LE G+PYTG GVMAS +DKV T
Sbjct: 73 ELKVEGFSHCFIALHGRFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMT-------- 124
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVA 528
K + R E L TP W ++ S + VKP R+G + G+
Sbjct: 125 --------KRIWRSEG-LPTP---EWRQVDSAAATSEAFAALGSPMIVKPDREGSTIGLT 172
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
+ V +E+C A+ + + +++ E FV+ D
Sbjct: 173 K----------VTQIEQC---------GAAYALAARHD---AMVLCEQFVKGD------- 203
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
E+T+ ++G H+L P + + + K+ T
Sbjct: 204 ------------------EVTIPLLGSGAGAHAL-PVIRIVAPDGNYDYQNKYFTDTTQY 244
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
L PA++ + E + Q++ L A L G++R+D ++ ++E+NT PGMT
Sbjct: 245 LV--PANLPAGE--EAHIQQLALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMT 300
Query: 708 PSTVL 712
P +++
Sbjct: 301 PHSLV 305
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GS+IG+T I+ A + D V+ E F++ G E T +L G+
Sbjct: 158 MIVKPDREGSTIGLTKVT-QIEQCGAAYALAARH-DAMVLCEQFVK-GDEVTIPLLGSGA 214
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV + + D ++Y+ KY T Y P P I+
Sbjct: 215 GAHALPV--------------IRIVAPDGNYDYQNKYF-TDTTQYLVPANLPAGEEAHIQ 259
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ A +Q LG +AR+D V + T+ +IN GM S
Sbjct: 260 QLALKAYQVLGCRGWARVD---------VMIDARTR-------APFLLEINTSPGMTPHS 303
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A G S+ + ++ HA
Sbjct: 304 LVPMAAKAAGVSYPALCLEVLRHA 327
>gi|239813928|ref|YP_002942838.1| D-alanine--D-alanine ligase [Variovorax paradoxus S110]
gi|239800505|gb|ACS17572.1| D-alanine/D-alanine ligase [Variovorax paradoxus S110]
Length = 323
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 123/309 (39%), Gaps = 77/309 (24%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 472
+ ++L +E A FIA+HG GEDGT+Q LE G+PYTG GVMAS MDKV T
Sbjct: 52 RDLVELRREGFARCFIALHGRHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMT---- 107
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCS 524
K + + + L V + + S+ Q + L VKP R+G S
Sbjct: 108 ------------KRIWQADGLPTPRYVRLAFDQQSREQVRAVPDVLGLPLIVKPPREGSS 155
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
GV ++ +S+ + + ++ E F+E +
Sbjct: 156 IGVTKV----------------------EGYSQMQDAVTLSARYDADVLCEEFIEGE--- 190
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 644
E+T V+G+ G +P V + + K+
Sbjct: 191 ----------------------EVTCAVLGQ-GLDARALPVVRIAAPEGAYDYQNKYF-- 225
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703
T P+ + EA + QRI L A + L G+ R D + + + ++E+NT
Sbjct: 226 TDDVKYHCPSGL--PEAEEHEIQRITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTS 283
Query: 704 PGMTPSTVL 712
PGMT +++
Sbjct: 284 PGMTSHSLV 292
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GSSIGVT G S + + D V+ E F+E G E T VL G
Sbjct: 145 LIVKPPREGSSIGVTKVEGY--SQMQDAVTLSARYDADVLCEEFIE-GEEVTCAVL--GQ 199
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G D LP V + + ++Y+ KY T V YH P P + I+
Sbjct: 200 GLDARA---LPV---------VRIAAPEGAYDYQNKYF-TDDVKYHCPSGLPEAEEHEIQ 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ LG + R D S F ++N GM S
Sbjct: 247 RITLAAYHTLGCRGWGRADVMIRASDRKPF----------------LLEMNTSPGMTSHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A G ++ ++ ++ A
Sbjct: 291 LVPMSARASGIAYEDLCLRVLASA 314
>gi|398993489|ref|ZP_10696438.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM21]
gi|398134675|gb|EJM23816.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM21]
Length = 327
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ CA DL KA
Sbjct: 151 -VKPAHEGSSIGMAKVNCASDLIGAWKA 177
>gi|423689791|ref|ZP_17664311.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SS101]
gi|388000454|gb|EIK61783.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SS101]
Length = 365
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 179/466 (38%), Gaps = 126/466 (27%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V +IFGG ++E +VSL S N+ + A + P L+ ID + N T S+
Sbjct: 6 VGIIFGGRSAEHEVSLQSARNI---VDALDRSRFEPVLIG--IDKAGHWHLNDT---SNF 57
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
+ P + L + E+ A+ P +A+ QVV +G+ +H D
Sbjct: 58 LLNQENPALIALNQSNREL------AVVPGKAS------QQVVETCGQGVLEH-----ID 100
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
+ +F VHG +GEDG LQ LL +P+ G V+ S
Sbjct: 101 V-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAV 137
Query: 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 513
CMDK I+K + R + TP + + ++ +T
Sbjct: 138 CMDK----------------DISKRLLRGAGIAVTPFISLTRANAARTSFETAAGKLGVP 181
Query: 514 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 573
+ +KPA G S GV+++ D T Y A+E L F
Sbjct: 182 MFIKPANQGSSVGVSKV---SDETEYRAAVELAL------GFD----------------- 215
Query: 574 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 633
+++L S + EI V+G + S + V S
Sbjct: 216 -------EKVLVESAVQGR--------------EIECAVLGNDQPIASGCGEIVV--SSG 252
Query: 634 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 693
S + K+ G + P + +S EA ++ ++ L G +R+D F+ D G
Sbjct: 253 FYSYDSKYIDGQAAQVVVP--ADISHEASERIRRLAIEAFEVLGCAGLARVDVFLTQD-G 309
Query: 694 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVLI E+N++PG T + ++ L + M + ++++L ER
Sbjct: 310 EVLINEINSLPGFT--RISMYPKLWQAAGMSYSELVSRLIELALER 353
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 37/206 (17%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGSG 100
+KP GSS+GV+ V D + + L G D++V+VE ++G E VL G
Sbjct: 184 IKPANQGSSVGVS---KVSDETEYRAAVELALGFDEKVLVESAVQG-REIECAVL----G 235
Query: 101 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160
D P+ G ++ ++Y KY+ Q P IR
Sbjct: 236 ND-QPIA----------SGCGEIVVSSGFYSYDSKYIDGQAAQVVVPADISHEASERIRR 284
Query: 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 220
A F+ LG AR+D + T+ G +L +IN + G + S
Sbjct: 285 LAIEAFEVLGCAGLARVDVFL-----------------TQDGEVLINEINSLPGFTRISM 327
Query: 221 LFQQASKVGFSHSNILRTIIGHACSR 246
+ G S+S ++ +I A R
Sbjct: 328 YPKLWQAAGMSYSELVSRLIELALER 353
>gi|410031330|ref|ZP_11281160.1| D-alanyl-alanine synthetase A [Marinilabilia sp. AK2]
Length = 328
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 60/290 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG L + G+PYT + S M+K T + + +L V +
Sbjct: 78 VFNILHGSPGEDGKLAGYFDMLGIPYTTCDALTSAITMNKGYTKAIVQDIPELFVARSIQ 137
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
KE+ L+ I EL L VKP G S G++++ +L +AL++
Sbjct: 138 LFSNKEENLER----IQKELRL-----PLFVKPNNGGSSIGMSKVKTPSELK---EALDK 185
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
F E D++L + +
Sbjct: 186 A------------------------------FAEDDQVLVEEFVSGR------------- 202
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E ++GV G +++P+ + S + E K+ G +TP MS E + +
Sbjct: 203 -EFSIGVYHAQGKT-TVLPATEIVSSKEFFDFEAKYSPGVTEEITP---GRMSEEEIGRV 257
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+ I + L +G R+D F+ D G+ IE+NTVPG T ++++ Q
Sbjct: 258 NRIIAQVYQKLNCKGAVRVDYFLEHDTGKFYFIEINTVPGQTETSLISQQ 307
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 44/206 (21%)
Query: 40 VVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
+ VKP GSSIG V + ++L KA DD+V+VE F+ G EF+
Sbjct: 157 LFVKPNNGGSSIGMSKVKTPSELKEALDKAFAE-----DDQVLVEEFV-SGREFS----- 205
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVV 154
+G +LP + ++ F++ KY P T+++ TP R
Sbjct: 206 IGVYHAQGKTTVLP---------ATEIVSSKEFFDFEAKYSPGVTEEI---TPGRMSEEE 253
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
I + + ++Q+L R+D +FL T G F +IN + G
Sbjct: 254 IGRVNRIIAQVYQKLNCKGAVRVD-YFLEHDT---------------GKFYFIEINTVPG 297
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
+TS + QQ +G + +I
Sbjct: 298 QTETSLISQQVRAIGMDVKDFYTELI 323
>gi|348590584|ref|YP_004875046.1| D-alanine--D-alanine ligase [Taylorella asinigenitalis MCE3]
gi|347974488|gb|AEP37023.1| D-alanine--D-alanine ligase [Taylorella asinigenitalis MCE3]
Length = 312
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 68/288 (23%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDG +Q LLE VPYTGPGVM+S M+K+ ++ D G+ T +
Sbjct: 59 FIALHGRYGEDGCIQGLLELLKVPYTGPGVMSSSIGMNKI---ISKKIFIDEGLPTPDYM 115
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
V + + LK V + + + VKP ++G + G+ +
Sbjct: 116 VVKSYEELKKAAVSLGY---------PIIVKPPQEGSTIGLVK----------------- 149
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD-RLMWKGNSRW 605
VE+DE+L S+ + + D L+ +
Sbjct: 150 -------------------------------VESDEMLESAFNESGQYDGELLVEKCIEG 178
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL-DK 664
E+TV ++GK + +L P V + ++K+ ++P TE + D
Sbjct: 179 RELTVAILGKQPNTKAL-PLVEIITPDGNYDYDQKYNRDDTKYISPAQIDPKLTEEIQDI 237
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
C + +AL+ EG+SR+D ++ N + I+E+NT PGMT +++
Sbjct: 238 CIKAY----DALECEGWSRVDVMLDGRN-KPWILEINTSPGMTSHSLV 280
>gi|374705580|ref|ZP_09712450.1| D-alanine--D-alanine ligase [Pseudomonas sp. S9]
Length = 319
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 55 GIDVGEDL-LQSLLNEKIDRA-------FIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L VL +D R D L P++
Sbjct: 107 SALAMDKLRTKQVWQSLGLPTPRHAVLASVEDCRAAADDLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ AE+L
Sbjct: 152 -VKPAHEGSSIGMAKVNSAEEL 172
>gi|405984194|ref|ZP_11042497.1| D-alanine-D-alanine ligase [Slackia piriformis YIT 12062]
gi|404388026|gb|EJZ83110.1| D-alanine-D-alanine ligase [Slackia piriformis YIT 12062]
Length = 317
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 411 SINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL 470
S ++ KL +E F+A+HG GEDGTLQ LE G+PYTG G+++S ++K +
Sbjct: 51 SRDDLKKLVEEEFDVAFLALHGKGGEDGTLQGFLETLGIPYTGSGILSSAIAVNKAKSKE 110
Query: 471 ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
D G+ V + D+L + + E T + C VKP +G S G
Sbjct: 111 CYE---DAGLRVAASVVVGRNDVLDSEDLKEIEE-TCGIPC---VVKPTTEGSSLG---- 159
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
+T+ A S+ +++ + + E F+E
Sbjct: 160 -----MTIVRDA-------------SQIQPALDVAFQVDDEAMVEQFIE----------- 190
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD-ILSLEEKFQGGTGINL 649
+E+TVGV+G + +P + + + D + K+ G +L
Sbjct: 191 --------------GIELTVGVVGN--DSYEALPVIQIVPNDDEFYNYHAKYAAGGSTHL 234
Query: 650 TPPPASIMSTEALDKCKQRIELIANA-LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
P P +T+ + Q + + A+A L G SR D ++ G+ I+E NT+PGMT
Sbjct: 235 CPAPLDEDTTQKV----QDMAIAAHAVLGCRGISRTDIMLD-KEGDCWILETNTLPGMTK 289
Query: 709 STVL 712
++++
Sbjct: 290 TSLI 293
>gi|158318856|ref|YP_001511364.1| D-alanine--D-lactate ligase [Frankia sp. EAN1pec]
gi|158114261|gb|ABW16458.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
Length = 348
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 115/283 (40%), Gaps = 72/283 (25%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN----- 484
+HG +GEDG +Q LLE G+PY G V +S CMDK SLA G+ T N
Sbjct: 98 LHGRLGEDGAMQGLLELSGIPYVGCDVQSSALCMDK---SLAYTVARGAGIATPNFWTVT 154
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ + DLL P+ VKPAR G S GV+++ E+L+
Sbjct: 155 ANEKVDADLLTYPVF----------------VKPARSGSSFGVSKVSRKEELS------- 191
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
G ++ ++ E V E+ + GN
Sbjct: 192 ---------------GAVDTARQYDSKVLIEEAVVGSEVGCA------------LLGND- 223
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
+++T G + + H + E + G+ + PA I S EA
Sbjct: 224 -LDLTAGEVDRISLSHGFFR----------IHQESAPESGSENSTAIVPADI-SAEARSL 271
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
++ + + AL G SR+D F+ D G+V++ EVNT+PGMT
Sbjct: 272 VQETAKAVYRALGCRGLSRVDMFLQED-GKVVLNEVNTLPGMT 313
>gi|417322525|ref|ZP_12109059.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329]
gi|328470679|gb|EGF41590.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329]
Length = 329
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 113/295 (38%), Gaps = 63/295 (21%)
Query: 422 NQATVFI--AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
NQ FI +HG GE G +QSL E G+PY G G AS +K+ + L + L
Sbjct: 71 NQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL---- 126
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK--TLCVKPARDGCSTGVARLCCAEDLT 537
D+ L T + H + K + VK AR G S G
Sbjct: 127 ------DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGC---------- 170
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
Y A ++ + + ++F + D++
Sbjct: 171 -YSVAEKQAIAKAVNDAFGYS------------------------------------DQV 193
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ + + E+ V G +H P + G S +EK+ + +LT A +
Sbjct: 194 LVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH-SLTEVEAKNL 252
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ E +DK E + + L SRID F+ DN E+ + EVNT PGMTP ++
Sbjct: 253 TQEQIDKIHHASETVFKQMNLRHLSRIDFFLTEDN-EIYLNEVNTFPGMTPISMF 306
>gi|291303857|ref|YP_003515135.1| D-alanine--D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
gi|290573077|gb|ADD46042.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
Length = 317
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 118/299 (39%), Gaps = 65/299 (21%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
+A A VF A+HGG GEDG+L+S+L+ G+PY GP A++ DK T+ AL L D
Sbjct: 53 IADPPDAVVF-ALHGGNGEDGSLRSVLDLIGIPYVGPDADAARRAWDK-PTAKAL--LRD 108
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
G+ T +E + + KL L VKPAR G GVA + AE+L
Sbjct: 109 AGLPTPEWIALPRETFSDLGAAKLLDRIVDKLGVP-LAVKPARGGSGLGVAVVRTAEELP 167
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
A+ C F D L + + K+
Sbjct: 168 A---AMIGC------------------------------FAYGDVALVEAFAPGKD---- 190
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
I VGV+ G + P+V ++ SGD ++ G P
Sbjct: 191 ----------IAVGVV-DTGDGPRVFPAVEIEPSGDAYDFAARYNPGASTWHVP------ 233
Query: 658 STEALDKCKQRIELIANA----LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + + +A A L L SRID V G L++E VPGMT +++L
Sbjct: 234 -ARLAPRVSEDVAAVATAAFRTLGLRDLSRIDMMVP-QAGPPLVLEAKVVPGMTETSLL 290
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 35/207 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+ VKP R GS +GV V + G G D +VE F G + V+D G
Sbjct: 144 LAVKPARGGSGLGVAVVRTAEELPAAMIGCFAYG--DVALVEAFAPG-KDIAVGVVDTGD 200
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G P V E++ G +++ +Y P +H P R V +
Sbjct: 201 GPRVFPAV------EIEPSGDA--------YDFAARYNPGAST-WHVPARLAPRVSEDVA 245
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A+ F+ LGL D +RID +P + G L + ++ GM +TS
Sbjct: 246 AVATAAFRTLGLRDLSRID-MMVPQA----------------GPPLVLEAKVVPGMTETS 288
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
L G ++ ++ A +R
Sbjct: 289 LLPMACEAAGHDLGELMAGLVDRAIAR 315
>gi|433660001|ref|YP_007300860.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus BB22OP]
gi|432511388|gb|AGB12205.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus BB22OP]
Length = 329
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 112/295 (37%), Gaps = 63/295 (21%)
Query: 422 NQATVFI--AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
NQ FI +HG GE G +QSL E G+PY G G AS +K+ + L + L
Sbjct: 71 NQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL---- 126
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK--TLCVKPARDGCSTGVARLCCAEDLT 537
D+ L T + H + K + VK AR G S G
Sbjct: 127 ------DIPNTPYLFLTRNDEHSHRQAEQAFEKWGKVFVKAARQGSSVG----------- 169
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
C + ++A + + F +D++L +
Sbjct: 170 --------CYSVTEKQAIAKA--------------VNDAFGYSDQVLVEKSVKPR----- 202
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
E+ V G +H P + G S +EK+ + +LT A +
Sbjct: 203 ---------ELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH-SLTEVEAKNL 252
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ E +DK + E + + L SRID F+ DN E+ + EVNT PGMTP ++
Sbjct: 253 TQEQIDKIRHASETVFKQMNLRHLSRIDFFLTEDN-EIYLNEVNTFPGMTPISMF 306
>gi|317049667|ref|YP_004117315.1| D-alanine--D-alanine ligase [Pantoea sp. At-9b]
gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
Length = 364
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 82/325 (25%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK
Sbjct: 101 VIFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVSMDK----------------DFT 144
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDL 536
K + R L P + + ++L + L +KPA G S GV+++ C E+
Sbjct: 145 KRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIKPANQGSSVGVSKVSCIEE- 203
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ AL+ +F R ++LI +
Sbjct: 204 --FAAALDLAF------TFDR------------KVLIEQGI------------------- 224
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA-S 655
KG EI V+G + S V V ++ S + K+ +G + P A S
Sbjct: 225 ---KGR----EIECAVLGNDEPVASPCGEVVVHDA--FYSYDTKYINESGAQVVVPAAIS 275
Query: 656 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
+EA+ + + L A AL+ G +R+D F+ D GE+++ EVNT+PG T + ++
Sbjct: 276 TADSEAI----RAVALQAFQALECSGMARVDVFLTED-GEIIVNEVNTLPGFT--NISMY 328
Query: 715 QALSEQPPMYPHQFFRKVLDLGSER 739
L + + ++++L ER
Sbjct: 329 PKLWQAAGLSYSALITRLIELAQER 353
>gi|417687859|ref|ZP_12337112.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82]
gi|332095383|gb|EGJ00406.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82]
Length = 306
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 137/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G+ ++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMTKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
Length = 311
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 137/332 (41%), Gaps = 68/332 (20%)
Query: 382 QVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQ 441
+ ++V LK G+D E+P+ ++ E IK A N A I+ HG GEDGT+Q
Sbjct: 19 KTARNIVNALK----LKGYDYI-EIPIDENVVENIKKANINVA--IISAHGKYGEDGTIQ 71
Query: 442 SLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTINKDVRRKEDLLKTPIV 499
LLE G+PY G GV+AS +DK +++ + ++K +DL IV
Sbjct: 72 GLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELETKDL--NNIV 129
Query: 500 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAH 559
+ SKL+ K +KPA G + G++ + + EE LL+
Sbjct: 130 ----KNVSKLK-KPWIIKPATQGSTIGLS-----------LASTEEELLK---------- 163
Query: 560 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSM 619
IE+ E +I E +++ EI N C
Sbjct: 164 -GIELAFKYDENIIIEEYIKGKEITAGIYDINNPV---------------------C--- 198
Query: 620 HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 679
+P + + E K+ G ++ P + + E +K + L AL
Sbjct: 199 ---LPLIEIIPKTGFYDYETKYTPGLSDHIIP---ARLPKEVYEKAQGLGILAHQALGCR 252
Query: 680 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
SR+D V + + ++EVNT+PGMT +++
Sbjct: 253 HLSRVDMIVEENTNHIYVLEVNTIPGMTETSL 284
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 37/201 (18%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVGS 99
++KP GS+IG+++A + L KGI L D+ +++E +++ G E TA + D+ +
Sbjct: 140 IIKPATQGSTIGLSLASTEEELL---KGIELAFKYDENIIIEEYIK-GKEITAGIYDINN 195
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
C P+ +++ K ++Y KY P + P R P V +
Sbjct: 196 PV-CLPL--------------IEIIPKTGFYDYETKYTPGLS-DHIIPARLPKEVYEKAQ 239
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
L Q LG +R+D ++ H++ ++N I GM +TS
Sbjct: 240 GLGILAHQALGCRHLSRVDMIVEENTNHIY----------------VLEVNTIPGMTETS 283
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A G ++ + I
Sbjct: 284 LYPEAAKAFGIDFPELIDSFI 304
>gi|50082937|gb|AAT70090.1| D-alanyl-D-alanine ligase [Paenibacillus thiaminolyticus]
gi|66731638|gb|AAY52005.1| VanA [Paenibacillus thiaminolyticus]
Length = 343
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 112/286 (39%), Gaps = 72/286 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT---- 482
F +HG GEDG++Q L E G+PY G + +S CMDK SL + G+ T
Sbjct: 95 FSVLHGKSGEDGSIQGLFELSGIPYVGCDIQSSAICMDK---SLTYTIAKNAGIATPDFW 151
Query: 483 -INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
INKD + D P+ VKPAR G S GV ++ A++L ++
Sbjct: 152 VINKDDKPAIDAFTYPVF----------------VKPARSGSSYGVKKVNGADELDAAIE 195
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+ + D + Q+ G
Sbjct: 196 SAR----------------------------------QYDSKILIEQAVLGCEVGCAVLG 221
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
NS E+ VG + + H + I E +G +T P + +S E
Sbjct: 222 NSS--ELIVGEVDQIRLQHGIF---------RIHQEAEPEKGSENAVITIP--ADLSVEV 268
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G SR+D F+ DNG +++ EVNT+PG T
Sbjct: 269 RGRIQETAKKIYKALGCRGLSRVDMFLQ-DNGSIVLNEVNTLPGFT 313
>gi|406663798|ref|ZP_11071819.1| D-alanine--D-alanine ligase B [Cecembia lonarensis LW9]
gi|405551952|gb|EKB47544.1| D-alanine--D-alanine ligase B [Cecembia lonarensis LW9]
Length = 331
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 116/290 (40%), Gaps = 60/290 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG L + G+PYT + S M+K T ++ + +L V
Sbjct: 78 VFNILHGSPGEDGKLAGYFDMVGIPYTTCDALTSAITMNKGYTKAIVHDIPELFVA---- 133
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R L + + ++ E K L VKP G S G+++
Sbjct: 134 ---RSIQLFQNKVENL--ERIQKELRLPLFVKPNNGGSSIGMSK---------------- 172
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
++ PN E L + F E D++L + +
Sbjct: 173 ----------------VKTPNELKEALD-KAFAEDDQVLVEEFVSGR------------- 202
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E ++GV G +++P+ + S + E K+ G +TP MS E +++
Sbjct: 203 -EFSIGVYHAQGKT-TVLPATEIVSSKEFFDFEAKYSPGVTEEITP---GRMSEEEVNRV 257
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+ I + L +G RID F+ + G+ IE+NTVPG T ++++ Q
Sbjct: 258 NRIIAQVYQKLNCKGAVRIDYFLEHETGKFYFIEINTVPGQTETSLISQQ 307
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 38/190 (20%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSSIG++ + LK+A DD+V+VE F+ G EF+ +G
Sbjct: 159 VKPNNGGSSIGMS-KVKTPNELKEALDKAF-AEDDQVLVEEFV-SGREFS-----IGVYH 210
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVINSIR 159
+LP + ++ F++ KY P T+++ TP R +N +
Sbjct: 211 AQGKTTVLP---------ATEIVSSKEFFDFEAKYSPGVTEEI---TPGRMSEEEVNRVN 258
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ ++Q+L RID +FL T G F +IN + G +TS
Sbjct: 259 RIIAQVYQKLNCKGAVRID-YFLEHET---------------GKFYFIEINTVPGQTETS 302
Query: 220 FLFQQASKVG 229
+ QQ +G
Sbjct: 303 LISQQVRAIG 312
>gi|418472116|ref|ZP_13041886.1| D-alanyl-alanine synthetase A [Streptomyces coelicoflavus ZG0656]
gi|371547276|gb|EHN75666.1| D-alanyl-alanine synthetase A [Streptomyces coelicoflavus ZG0656]
Length = 389
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 124/294 (42%), Gaps = 75/294 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS DK V TS L +G
Sbjct: 126 VFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLK----VGP 181
Query: 481 LTINKDVRRKEDL--LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
+ + ++D + IVD E L VKPAR G S G+ ++ +DL+
Sbjct: 182 YAVIRPREWEQDRSGARKKIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DDLSG 233
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+A+EE +R H P+IL+
Sbjct: 234 LDEAIEE----------ARRHD--------PKILV------------------------- 250
Query: 599 WKGNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PAS 655
+ R EI GV+ + G S+ + E K+ I+ TP PA
Sbjct: 251 -EAALRGREIECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY-----IDSTPGIVPAP 304
Query: 656 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E + QR+ + A +A EG R D F+ D+ E +I E+NT+PG TP
Sbjct: 305 LTAGETAE--VQRLAVAAFDAASCEGLVRADFFLT-DDDEFVINEINTMPGFTP 355
>gi|152988032|ref|YP_001350318.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
gi|150963190|gb|ABR85215.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
Length = 319
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGDDLLHR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWRSLGLPTPDYAVLGSEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|260913005|ref|ZP_05919490.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
gi|260632995|gb|EEX51161.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
Length = 318
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 122/291 (41%), Gaps = 64/291 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + G+
Sbjct: 72 VFNILHGRGGEDGTMQGLLEQIGIPYTGCGVMASALTMDKMRTKMLWKA---FGLPVAEM 128
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
++ K ++ + ++ +L L VKP+ +G S G+ ++ EDL K+ +
Sbjct: 129 EIVTKNNVAELNPAEVVEKLGL-----PLMVKPSLEGSSVGLTKVKAVEDL----KSAVD 179
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ E ++ E ++ D
Sbjct: 180 FALKF------------------DETVLIEEWLAGD------------------------ 197
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+T+ V+ + ++P+V + G+ E K+ P + +S E +
Sbjct: 198 -ELTIPVLD-----NEVLPAVRIVPEGEFYDYEAKYLSDNTQYFCP---AGLSKEREQEL 248
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
Q ++ + + G+SRID + G+ ++EVNT PGMT ++ A
Sbjct: 249 NQLVKRAYDVVGCRGWSRIDVMTD-SKGQFRLVEVNTNPGMTSHSLFPKSA 298
>gi|399046952|ref|ZP_10739140.1| D-alanine--D-alanine ligase [Brevibacillus sp. CF112]
gi|433545494|ref|ZP_20501847.1| D-alanine--D-alanine ligase [Brevibacillus agri BAB-2500]
gi|398055102|gb|EJL47194.1| D-alanine--D-alanine ligase [Brevibacillus sp. CF112]
gi|432183149|gb|ELK40697.1| D-alanine--D-alanine ligase [Brevibacillus agri BAB-2500]
Length = 375
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 170/454 (37%), Gaps = 133/454 (29%)
Query: 284 VIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRV 343
+I+GG +SE +VSL + ++ + A N EVTP + +D S
Sbjct: 10 IIYGGKSSEHEVSLRTALSIMKAVDA-NKYEVTPIYV--QLDGS---------------- 50
Query: 344 VWSLPYSLVLRHTTEEVLAACI-EAIEPDRAAFTSHLRNQVV---NDLVEGLKKHSWFTG 399
W E LA + E I+ R NQ +L+ K S F
Sbjct: 51 -W----------VKGEALAGQLPEKIDALRLTTGDQAINQATGSGQELIPASKPASLF-- 97
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
SI + + + +F VHG GEDGT+Q +LE +PY G GVMAS
Sbjct: 98 -----------SIGQQVDV-------IFPVVHGPNGEDGTIQGMLELANLPYVGTGVMAS 139
Query: 460 KTCMDK-----VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
MDK V + L + +G+L + K P ++ + KL
Sbjct: 140 AVGMDKWMMKTVFAQVGLPQVKYVGLL--------RSQWEKNP-EEVAENIERKLGYPCF 190
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574
VKPA G S G+++ A++ V+AL F R LI
Sbjct: 191 -VKPANMGSSVGISK---AKNRAELVQALNLAA------RFDRR-------------LIV 227
Query: 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 634
E FV+ E+ + GN V VG I + KE D
Sbjct: 228 EEFVQAREL------------EIGVLGNEELVTSVVGEI------------IAAKEFYD- 262
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
E K++ G G L+ P +++ D + AL G SR+D F + N +
Sbjct: 263 --YEAKYK-GAGTELSIP--AVIPEHVADGIADIAKKAFQALDGSGLSRVDFFWDEKNDK 317
Query: 695 VLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 728
+ I EVNT+PG TP + MYP F
Sbjct: 318 LYINEVNTMPGFTPFS------------MYPMLF 339
>gi|220901858|gb|ACL82961.1| VanM [Enterococcus faecium]
Length = 343
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 113/283 (39%), Gaps = 62/283 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDG +Q L E G+PY G + +S CMDK SLA + G+ T
Sbjct: 93 VVFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQSSAVCMDK---SLAYIIAKNAGIATPE 149
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
V K+D P D + + VKPAR G S GV ++
Sbjct: 150 FQVIYKDD---KPAADSF--------TYPVFVKPARSGSSYGVNKV-------------- 184
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
NS I++ ++ E V E+ + GNS
Sbjct: 185 --------NSADELDSAIDLARQYDSKILIEQGVLGYEVGCAVL------------GNS- 223
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
++ VG + + H + I E +G +T P +S E ++
Sbjct: 224 -FDLIVGEVDQIRLQHGIF---------RIHQEAEPEKGSENATITVPAE--LSAEERER 271
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
K+ + I AL G SR+D F+ DNG +++ EVNT+PG T
Sbjct: 272 IKEAAKNIYKALGCRGLSRVDMFLQ-DNGRIVLNEVNTMPGFT 313
>gi|28210407|ref|NP_781351.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
gi|39931117|sp|Q897P8.1|DDLA_CLOTE RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|28202844|gb|AAO35288.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
Length = 301
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 79/295 (26%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN-K 485
FIA+HG GEDG +Q+LLE GVPY+G GV+AS CMDK +++ L G+ T
Sbjct: 57 FIALHGNFGEDGKVQALLETMGVPYSGSGVLASSLCMDK---NMSKKILQGEGIKTPRWI 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ + ED+ I +I + L VKP G S G+ + ++L +KA+EE
Sbjct: 114 MLYKNEDIDFESIKNIGY---------PLVVKPNSGGSSIGITIVKKEQEL---IKAIEE 161
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
F EILI E +++ +EI M G
Sbjct: 162 AF------KFDE------------EILI-EEYIKGEEITCC-----------MLDGKP-- 189
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
+P +++K + + + K+ G + + +S E
Sbjct: 190 -----------------LPILSIKTKEEFFNYKAKYFEG----VAEEKVADLSLE----L 224
Query: 666 KQRIELIAN----ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
K ++E I+N + +L+ + RID + EV +IE+NT+PGMT ++ A
Sbjct: 225 KDQVEKISNKCWKSFKLKVYGRIDMIIK--GNEVYVIEINTLPGMTKYSLFPKSA 277
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 85/208 (40%), Gaps = 41/208 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+VVKP GSSIG+T+ + +K + D+ +++E +++ G E T +L
Sbjct: 133 LVVKPNSGGSSIGITIVKKEQELIKAIEEAF--KFDEEILIEEYIK-GEEITCCML---- 185
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
D P+ +L ++ K+ FNY+ KY + VA + + + +
Sbjct: 186 --DGKPLPIL------------SIKTKEEFFNYKAKYF--EGVAEEKVADLSLELKDQVE 229
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ ++ ++ L + RID + +V +IN + GM + S
Sbjct: 230 KISNKCWKSFKLKVYGRIDMIIKGNEVYVI------------------EINTLPGMTKYS 271
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRF 247
+ A G + S +L II + +
Sbjct: 272 LFPKSAKAYGLNFSELLDKIIELSIKEY 299
>gi|386842754|ref|YP_006247812.1| D-alanyl-alanine synthetase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103055|gb|AEY91939.1| D-alanyl-alanine synthetase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796046|gb|AGF66095.1| D-alanyl-alanine synthetase A [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 385
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 122/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M ++ TS L L
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRIFTSYGLKVGPYL-- 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ R E + I+D E L VKPAR G S G+ ++ EDL+
Sbjct: 180 VIRPREWARDESAARKKIIDFAGE-----HGWPLFVKPARAGSSIGITKV---EDLSGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E ++AH P+IL+ +
Sbjct: 232 EAIAE----------AQAHD--------PKILV--------------------------E 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + ++ E K+ I+ TP PA +
Sbjct: 248 AAVRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKY-----IDSTPGVVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + +E A EG R D F+ ++GE +I EVNT+PG TP
Sbjct: 303 EEQTAEVRWLAVEAF-EATSCEGLVRADFFLT-EDGEFVINEVNTMPGFTP 351
>gi|209550169|ref|YP_002282086.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209535925|gb|ACI55860.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 308
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 135/324 (41%), Gaps = 78/324 (24%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD+ + + ++E KLA VF A+HG GEDGT+Q +LE +PYT GV+A
Sbjct: 35 GFDVT-RIDVARDVSE--KLAALKPDVVFNALHGPFGEDGTIQGILEYLEIPYTHSGVLA 91
Query: 459 SKTCMDKVATSL--ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516
S MDK L A + IN+ +K P V V
Sbjct: 92 SALAMDKDKAKLVAAAAGIPVAESQVINRFAFPSTHPMKPPYV----------------V 135
Query: 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576
KP R+G S GV + ED +AH PP+++
Sbjct: 136 KPVREGSSFGV--VIVTED---------------------QAH--------PPQVVSSPE 164
Query: 577 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 636
+ +E+L + E+T GV+G+ +L + V + +
Sbjct: 165 WRYGEEVLVERYVYGR--------------ELTCGVMGET----ALGVTEVVPQGHNFYD 206
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVN---VDN 692
+ K+ G ++ P + +S K QR+ L A+ A+ G SR D + ++
Sbjct: 207 YDSKYAAGGSKHVIP---AKISPNIYQKI-QRLALRAHQAIGCRGVSRSDFRYDDRFTED 262
Query: 693 GEVLIIEVNTVPGMTPSTVLIHQA 716
GE++ +EVNT PGMTP++++ A
Sbjct: 263 GEIIWLEVNTQPGMTPTSLVPEMA 286
>gi|225412310|ref|ZP_03761499.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
DSM 15981]
gi|225042103|gb|EEG52349.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
DSM 15981]
Length = 353
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 131/325 (40%), Gaps = 77/325 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++ +LGV
Sbjct: 96 VVFPVLHGLYGEDGTVQGLLELAKIPYVGCGVLASAVSMDKLFTKIIVD---NLGVRQAE 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQ---CKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ +E L V T++++ + +KP+ G S GV++ E+L
Sbjct: 153 YEPVTREQLAHMEAV------TARIEGHFSYPVFIKPSNAGSSRGVSKAENREELEA--- 203
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
G++E +IL+ E V
Sbjct: 204 ------------------GLLEAARHDRKILVEEAIV----------------------- 222
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS------LEEKFQGGTGINLTPPPAS 655
R VE C +V G+IL+ E K+ +T P
Sbjct: 223 -GREVE--------CAVFGGGAEAVVASGVGEILAAAEFYDFEAKYYNEESRTVTDPE-- 271
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+ +A ++ +Q + A+ G +R+D FV D GEV+ E+NT+PG T + ++
Sbjct: 272 -LPGDAAERIRQTAVSVFQAVDGYGLARVDFFVTGD-GEVVFNEINTLPGFT--AISMYP 327
Query: 716 ALSEQPPMYPHQFFRKVLDLGSERF 740
L E + + K++ G +RF
Sbjct: 328 MLWEARGVSKEELVEKLIAHGLKRF 352
>gi|424944825|ref|ZP_18360588.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa NCMG1179]
gi|346061271|dbj|GAA21154.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa NCMG1179]
Length = 319
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E A FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIARAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|284036028|ref|YP_003385958.1| D-alanine--D-alanine ligase [Spirosoma linguale DSM 74]
gi|283815321|gb|ADB37159.1| D-alanine--D-alanine ligase domain protein [Spirosoma linguale DSM
74]
Length = 551
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 47/325 (14%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 483
F+A+HG EDG +Q LLE +PYTGPG++ S ++K+ + +AL + TI
Sbjct: 101 AFLAMHGPDCEDGAIQGLLEWHKMPYTGPGLVGSAVGINKILQNELIALANGQKKKTATI 160
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
++D + D + + L L + +K G S GVA + DL + +++
Sbjct: 161 SRDDYEQADKAQ-----FFQSLVEHLGL-PIVIKAPHQGSSIGVA-IVREADLAQFCRSV 213
Query: 544 EECL--LRIPPNSFSRAHGMIEMPNPPPEIL----------IFEPFV--ETDEIL----- 584
E+C + I P+ +S+ G + L I P V +T E++
Sbjct: 214 EQCFFTMSIQPDGWSKLSGWTSLSGTEKHELAQKMVSLDSGISFPVVIEQTGEVIKHPAD 273
Query: 585 -------FSSQSTNK------NA-DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 630
+QS+ NA D ++++ E + GVI + +P +
Sbjct: 274 FVARLDALMAQSSQPITLASLNAEDEVLFEEFITGQEFSCGVIQDDDQVAIALPPTEIYN 333
Query: 631 SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV 690
E K++ T P S+ + K + + + L + +SRID F+
Sbjct: 334 VTS-FDFESKYKLNTTKKRIPVETSLENNR---KIQLAVAQVFTRLGINVYSRIDGFLT- 388
Query: 691 DNGEVLIIEVNTVPGMTPSTVLIHQ 715
G+VL+ + NT+PGM+PS+++ Q
Sbjct: 389 PAGDVLLHDPNTIPGMSPSSLIFKQ 413
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 33/166 (19%)
Query: 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRR 134
+D V+ E F+ G EF+ V+ D + L PTE+ S D K + N +
Sbjct: 297 EDEVLFEEFITG-QEFSCGVIQDD---DQVAIALPPTEI--YNVTSFDFESKYKL-NTTK 349
Query: 135 KYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 194
K +P + + I+ + +F RLG+ ++RIDG+ P+
Sbjct: 350 KRIPVETSLENN---------RKIQLAVAQVFTRLGINVYSRIDGFLTPA---------- 390
Query: 195 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
G +L D N I GM +S +F+Q +++G + +N L +I
Sbjct: 391 -------GDVLLHDPNTIPGMSPSSLIFKQMAEIGLNLANSLTYLI 429
>gi|170722840|ref|YP_001750528.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
gi|169760843|gb|ACA74159.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
Length = 304
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 66/130 (50%), Gaps = 22/130 (16%)
Query: 408 MRHSI------NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
+RH I E ++L VF+A+HGG GE+G Q+ LE +G+PY GP S
Sbjct: 35 IRHEIFTISDYRELLRLDLAKFTRVFLALHGGFGENGMAQAYLEGQGIPYNGPSPQTSAI 94
Query: 462 CMDKVATSLALNHLA-DLGVLTINKDV-RRKEDLLKTPIVDIWHELTSKLQCKTLC-VKP 518
CM+K+ T H+A LG+ N RR +DL I + Q T C VKP
Sbjct: 95 CMNKLLT----KHIAMGLGINVANYLYSRRGDDLCVEKINE---------QLGTPCIVKP 141
Query: 519 ARDGCSTGVA 528
R+GCS GV+
Sbjct: 142 NREGCSFGVS 151
>gi|336451745|ref|ZP_08622182.1| D-alanine--D-alanine ligase [Idiomarina sp. A28L]
gi|336281558|gb|EGN74838.1| D-alanine--D-alanine ligase [Idiomarina sp. A28L]
Length = 307
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 123/297 (41%), Gaps = 64/297 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
++L N FIA+HG GEDG +Q++LE G+PYTG G++A MDK T AL H
Sbjct: 50 LELVSLNVNRAFIALHGRGGEDGQVQAVLEVLGIPYTGSGILACALTMDKSKTK-ALWH- 107
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
+G+ T +L + L K+ VKPA +G S G+ A++
Sbjct: 108 -GMGLPTAAAATITASELSTVDCAALLARLGGKVM-----VKPAHEGSSIGMGMAHTADE 161
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L V AL+E +R G + VET
Sbjct: 162 LAV---ALKEA---------ARFDG--------------DMLVET--------------- 180
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
W E TV V+ +P++ V+ K+Q T + P
Sbjct: 181 ---WLSGP---EYTVAVLAG-----EALPAIKVQTPHAFYDYAAKYQDNTTQYICPAE-- 227
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+S E + + A+ EG+ R+D +N NG++ ++E+NTVPGMT +++
Sbjct: 228 -LSDEQEKQVRDLAVAAFKAVGCEGWGRVDMMMN-SNGQLQLLELNTVPGMTAKSLV 282
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 45/222 (20%)
Query: 22 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRV 78
SELS L GKV+VKP GSSIG+ +A+ + +LK+A D +
Sbjct: 122 SELSTVDCAALLARLGGKVMVKPAHEGSSIGMGMAHTADELAVALKEAA-----RFDGDM 176
Query: 79 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 138
+VE +L G E+T VL G LP ++ V+ A ++Y KY
Sbjct: 177 LVETWLS-GPEYTVAVL-AGEA--------LP---------AIKVQTPHAFYDYAAKY-Q 216
Query: 139 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 198
Y P +R+ A F+ +G + R+D + +S+
Sbjct: 217 DNTTQYICPAELSDEQEKQVRDLAVAAFKAVGCEGWGRVD--------MMMNSN------ 262
Query: 199 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
G + ++N + GM S + A +VG S ++ I+
Sbjct: 263 ---GQLQLLELNTVPGMTAKSLVPMAAKQVGISFPALVLQIL 301
>gi|422009547|ref|ZP_16356530.1| D-alanine--D-alanine ligase [Providencia rettgeri Dmel1]
gi|414093365|gb|EKT55037.1| D-alanine--D-alanine ligase [Providencia rettgeri Dmel1]
Length = 306
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 131/317 (41%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ T L L+++
Sbjct: 58 VFIALHGRGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRT----KQLWQGAGLSVSP 113
Query: 486 DVRRKEDLLKTPIVDIWHE-LTSKLQCKT--LCVKPARDGCSTGVARLCCAEDLTVYVKA 542
V + K HE + +K+Q L VKP+ +G S G++++ E L
Sbjct: 114 YVYLTQQQYK----QASHEQIVAKVQLLGLPLIVKPSLEGSSVGMSKVDSLESL------ 163
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
P L F+ F ET I
Sbjct: 164 ------------------------PAALDLAFQ-FDETLLI------------------- 179
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV V+G + +PS+ ++ G E K+ P
Sbjct: 180 EKWLSGPEFTVAVLGD-----NTLPSIRIQPPGIFYDYEAKYLSDETQYFCPSGLG---- 230
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
E L+ + L A A+ EG+ R+D + ++G+ ++EVNT PGMT +++ A
Sbjct: 231 EQLESELAELALKAYQAVGCEGWGRVDVMQD-NDGQFYLLEVNTSPGMTSHSLVPMAA-- 287
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L L
Sbjct: 288 RQAGMSFSQLVVQILKL 304
>gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 353
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 129/322 (40%), Gaps = 74/322 (22%)
Query: 410 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 469
H++ + A+ + VF +HG GEDGT+Q L E G+PY GPGV+AS MDK T
Sbjct: 87 HNVTDGTLFAEVD--VVFPILHGPFGEDGTVQGLFELSGLPYVGPGVLASSVGMDKEFTK 144
Query: 470 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529
L ADL V E +LK ++ + +L VKPAR G S GV++
Sbjct: 145 KVLAA-ADLPV--------APEVILKG-RTELSEDEKQQLGLPVF-VKPARGGSSIGVSK 193
Query: 530 LCCAEDLTVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
+ E+ V ALE + ++IL +
Sbjct: 194 VTTWEEFPAAVDLALE----------------------------------DDEKILVEPE 219
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKC-----GSMHSLMPSVTVKESGDILSLEEKFQG 643
K E+ +GV+ S+ +L+ + + G + K+
Sbjct: 220 IVGK--------------EVEIGVLHYADGTLLASVPALLAGIDDSDEG-FYGFDTKYLD 264
Query: 644 GTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703
P P + TE L R AL EG SR+D FV D+ V I E+NT+
Sbjct: 265 NVVTAEIPAPFAPELTEKLRDMAIR---AFEALNCEGLSRVDFFVTKDS--VYINEINTL 319
Query: 704 PGMTPSTVLIHQALSEQPPMYP 725
PG TP + + Q L+ YP
Sbjct: 320 PGFTPIS-MYPQVLAASGVEYP 340
>gi|408789839|ref|ZP_11201480.1| D-alanine--D-alanine ligase [Lactobacillus florum 2F]
gi|408520861|gb|EKK20883.1| D-alanine--D-alanine ligase [Lactobacillus florum 2F]
Length = 377
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 104/467 (22%), Positives = 164/467 (35%), Gaps = 127/467 (27%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V +IFGGD+SE VS S N++ MD N D
Sbjct: 7 VALIFGGDSSEHDVSKRSAHNIY-----------------------DAMDQNKYD----- 38
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
+ LV R + I + R F QV+ +
Sbjct: 39 -----VSLFLVTR-------SGIILSDADSRKVFAGESEEQVIAN--------------- 71
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
A + P + ++L + VF + HG +GEDGT+Q LL PY G G MAS
Sbjct: 72 -AQQKPADFPLAPIMELNSVKKIDVFFPIIHGNLGEDGTIQGLLRLLKTPYVGSGTMASA 130
Query: 461 TCMDKVATSLALNH--LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
DK T LN + + + I RR+ D + +LT L TL +KP
Sbjct: 131 MAYDKDITKKLLNECGVRNTKYVLITAANRRQWD---------YQQLTEHLNSTTLFLKP 181
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
AR G S G+ ++ + Y LE+ F
Sbjct: 182 ARQGSSIGIHQINNQDQ---YEAGLEDA------------------------------FR 208
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
D+IL E+ + ++G S + ++ V + + +
Sbjct: 209 YDDKILIEEAIEGPE-------------EVEISILGNEHPQASKLGAIKVPKDDGFYTYD 255
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGE 694
KF + + T P + D+ I +A L+L+G +RID V+ N
Sbjct: 256 NKFVDASQVEFTIP------VQLPDEVTAEITEMALKAYRELELKGMARIDFLVS-KNLT 308
Query: 695 VLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
EVNT+PG T + ++ L E + + +++ L + F+
Sbjct: 309 PYFGEVNTLPGFT--NISLYPQLWEASGISYSELIDRLIQLAQDEFV 353
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 46/219 (21%)
Query: 36 NSGKVVVKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGS 88
NS + +KP R GSSIG+ G+ D+ + DD++++E +EG
Sbjct: 173 NSTTLFLKPARQGSSIGIHQINNQDQYEAGLEDAFR---------YDDKILIEEAIEGPE 223
Query: 89 EFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP 148
E +L + HP + G++ V + D + Y K++ QV + P
Sbjct: 224 EVEISILG-----NEHP--------QASKLGAIKVPKDDGFYTYDNKFVDASQVEFTIPV 270
Query: 149 RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTD 208
+ P V I E A ++ L L ARID FL S T F +
Sbjct: 271 QLPDEVTAEITEMALKAYRELELKGMARID--FLVSKNL---------------TPYFGE 313
Query: 209 INLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 247
+N + G S Q G S+S ++ +I A F
Sbjct: 314 VNTLPGFTNISLYPQLWEASGISYSELIDRLIQLAQDEF 352
>gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
Length = 350
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 132/331 (39%), Gaps = 72/331 (21%)
Query: 388 VEGLKKHSWFTGFDIADEL--PMRHSINEWIKLAKENQAT-----VFIAVHGGIGEDGTL 440
VE ++ H+W T + P R I+L+ E VF +HG GEDGT+
Sbjct: 56 VEMIRNHTWLTDKSCVEAFISPSREQ-KGLIELSPEGYKVTEVDVVFPILHGKFGEDGTI 114
Query: 441 QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500
Q LLE G+P+ G +AS CMDK T +A G+ V KED ++
Sbjct: 115 QGLLELSGIPFVGCRTLASAICMDKAITH---RLVAKEGIKVARSIVLYKEDRNAEQRLE 171
Query: 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHG 560
E+ KL + +KPA+ G S G+ ++ E L ++ S+A
Sbjct: 172 ---EVDIKL---PVYIKPAKSGSSIGITKVFHFEQL---------------EDAISKA-- 208
Query: 561 MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 620
F+E D+++ N E+ ++G M
Sbjct: 209 ----------------FLEDDKVVIEE--------------NINGFEVGCAILGNENPMI 238
Query: 621 SLMPSVTVKESGDILSLEEKFQ-GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 679
+ + + GD EK+ + I++ PA + E + K+ I L
Sbjct: 239 GEVDEIEL--MGDFFDFNEKYMLANSKIHM---PARV-EKEVAHQIKKTAIKIYEILSCT 292
Query: 680 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
G +R+D F+ N E+ EVNT+PG T S+
Sbjct: 293 GLARVDMFLTQGN-EIYFNEVNTLPGFTSSS 322
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 46/206 (22%)
Query: 40 VVVKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
V +KP ++GSSIG+T + + D++ KA LE DD+VV+E + G +
Sbjct: 179 VYIKPAKSGSSIGITKVFHFEQLEDAISKA---FLE--DDKVVIEENING--------FE 225
Query: 97 VGSGF--DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
VG + +P++ E+EL F++ KY+ H P R V
Sbjct: 226 VGCAILGNENPMIGEVDEIELM----------GDFFDFNEKYMLANS-KIHMPARVEKEV 274
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+ I++ A +++ L AR+D + T+ I F ++N + G
Sbjct: 275 AHQIKKTAIKIYEILSCTGLARVDMFL-----------------TQGNEIYFNEVNTLPG 317
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
+S + S +G S+++++ +I
Sbjct: 318 FTSSSRYPKMMSSIGLSYTDVITRLI 343
>gi|121595959|ref|YP_987855.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
gi|190359106|sp|A1WC04.1|DDL_ACISJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|120608039|gb|ABM43779.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
Length = 332
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 126/297 (42%), Gaps = 75/297 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKAHGYSRCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLC 531
K + R D L TP +V E Q + VKP+R+G + G+ +
Sbjct: 112 --------KRIWRA-DGLPTPDWRLVSSSAETAQAFQELGAPMIVKPSREGSTIGLTK-- 160
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
V +L +C +A+ + + PE+L E F++ D
Sbjct: 161 --------VTSLGQC---------EQAYRLAAQHD--PEVLC-EQFIDGD---------- 190
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
E T ++G+ G+ +P + ++ + K+ T +
Sbjct: 191 ---------------ETTCPILGQ-GTEARALPVIRIEAPQGNYDYQNKYF--TDVTQYH 232
Query: 652 PPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + EA ++ QRI + A L G++R D + + + ++E+NT PGMT
Sbjct: 233 CPSGL--PEAEEREIQRIVVQAYRTLGCRGWARADIMIRASDRKPFLLEINTSPGMT 287
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 38/206 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGI--ILEGIDDRVVVELFLEGGSEFTAIVLDV 97
++VKP+R GS+IG+T + SL + + + D V+ E F++ G E T +L
Sbjct: 145 MIVKPSREGSTIGLT----KVTSLGQCEQAYRLAAQHDPEVLCEQFID-GDETTCPILGQ 199
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G+ PV+ + QG+ ++Y+ KY T YH P P
Sbjct: 200 GTEARALPVIRIEAP-----QGN---------YDYQNKYF-TDVTQYHCPSGLPEAEERE 244
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I+ ++ LG +AR D S F +IN GM
Sbjct: 245 IQRIVVQAYRTLGCRGWARADIMIRASDRKPF----------------LLEINTSPGMTG 288
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHA 243
S + A+ G S+ ++ I+ A
Sbjct: 289 HSLVPMSANASGISYPDLCLRILASA 314
>gi|377573025|ref|ZP_09802101.1| D-alanine--D-alanine ligase [Mobilicoccus pelagius NBRC 104925]
gi|377538299|dbj|GAB47266.1| D-alanine--D-alanine ligase [Mobilicoccus pelagius NBRC 104925]
Length = 371
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 57/315 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVA-TSLALNHLADLGVLTIN 484
VF +HG GEDGTLQ +LE +PY G GV+AS T MDK A + +H +G
Sbjct: 108 VFPLLHGPFGEDGTLQGMLELADIPYVGCGVLASATMMDKHAMKGVFASHGLPIGPFVTI 167
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
D + D +D LT L VKPAR G S G+ R+ E+L V+A
Sbjct: 168 TDRQWCTD--PQAAIDAACALTFP-----LFVKPARAGSSVGITRVHSREELPAAVEA-- 218
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+RAH P++++ + V + Q +A R
Sbjct: 219 -----------ARAHD--------PKVVVEQGIVGREIECGVLQGRGHDAPRT------- 252
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
SL+ + V + K+ + L+ PA + +A D+
Sbjct: 253 ----------------SLLGEIVVDSEHGFYDFDAKYLDEKDVVLS-CPAELPQGDA-DR 294
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
+ A EG +R+D F G+V++ E+NT+PG TP ++ L+ M
Sbjct: 295 IRTMAAEAFEAAGCEGLARVD-FFYTPEGDVVVNEINTMPGFTPHSMYPQMWLASG--MT 351
Query: 725 PHQFFRKVLDLGSER 739
+++DL R
Sbjct: 352 YRDLITELIDLALTR 366
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 36/208 (17%)
Query: 42 VKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP RAGSS+G+T + + +++ A+ D +VVVE + G E VL G
Sbjct: 192 VKPARAGSSVGITRVHSREELPAAVEAAR-----AHDPKVVVEQGIV-GREIECGVLQ-G 244
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D LL G + V + +++ KYL + V P P + I
Sbjct: 245 RGHDAPRTSLL---------GEIVVDSEHGFYDFDAKYLDEKDVVLSCPAELPQGDADRI 295
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R A+ F+ G AR+D ++ P G ++ +IN + G
Sbjct: 296 RTMAAEAFEAAGCEGLARVDFFYTPE-----------------GDVVVNEINTMPGFTPH 338
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSR 246
S Q G ++ +++ +I A +R
Sbjct: 339 SMYPQMWLASGMTYRDLITELIDLALTR 366
>gi|108805737|ref|YP_645674.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
gi|108766980|gb|ABG05862.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
Length = 351
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 126/319 (39%), Gaps = 58/319 (18%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E+ VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ H V
Sbjct: 84 ESVDVVFPVLHGPYGEDGTIQGLLELADIPYVGAGVLASAVGMDKITMKKVFAHHGLPQV 143
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ RR ++ K + ++ E C VKP+ G S G++R
Sbjct: 144 RWVELTRRRWQERRKELLREV--EEELGFPC---FVKPSNLGSSVGISRAA--------- 189
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
E E+ + + R++ +
Sbjct: 190 --------------------------------------EPGELAAALDAAAALDRRIIVE 211
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
E+ V V+G S+ + +++ GD E K+ G G+ L P + + E
Sbjct: 212 AGVDAREVEVSVLGNEAPEVSVPGEILIRK-GDFYDYEAKYSEG-GMELEAP--ADLPQE 267
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ ++ A+ G +R+D F+ G VL+ E+NT+PG T ++V + L E
Sbjct: 268 TAGEIRRIARTAFEAIDAAGMARVDFFLERRTGRVLLNEINTIPGFTATSV--YSRLWEA 325
Query: 721 PPMYPHQFFRKVLDLGSER 739
+ + ++++L ER
Sbjct: 326 SGLPYERLLERLIELALER 344
>gi|346225492|ref|ZP_08846634.1| D-alanyl-alanine synthetase A [Anaerophaga thermohalophila DSM
12881]
Length = 340
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 130/314 (41%), Gaps = 65/314 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
++I +HG GEDG LQ L+ +P+T V+ + +K + +L GV +
Sbjct: 76 LYITIHGTPGEDGLLQGYLKMMNIPHTTCDVLPAALTFNKFTCN---TYLKGFGVAVADS 132
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ RK DI ++ L C VKP G S G+ + VK+ EE
Sbjct: 133 VLLRKGREYNAE--DIKEKIG--LPC---FVKPNAGGSSFGITK----------VKSFEE 175
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
E I + FVE+DE+L + KG
Sbjct: 176 L-----------------------EPAIEKAFVESDEVLVET----------FMKGT--- 199
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+T G I K S +MP V + E K+ I +TP + +S E +K
Sbjct: 200 -EVTCG-IYKTLSKDVVMPLTEVISKNEFFDFEAKYNAEKAIEITP---ARISDELTEKI 254
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
++ LI + L +G R+D + + ++ ++EVNT PGMTP++ + Q +E M
Sbjct: 255 QKITSLIYDILNCKGIVRMDYIIT--DKKIFLLEVNTTPGMTPTSFIPQQ--TEAMGMTM 310
Query: 726 HQFFRKVLDLGSER 739
+ ++++ ER
Sbjct: 311 QEVITEIIEDAIER 324
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 44/221 (19%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 99
VKP GSS G+T + S ++ + I + D V+VE F++G +E T + S
Sbjct: 156 VKPNAGGSSFGITK----VKSFEELEPAIEKAFVESDEVLVETFMKG-TEVTCGIYKTLS 210
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
VV+ TEV K+ F++ KY + + TP R + I+
Sbjct: 211 ----KDVVMPLTEV----------ISKNEFFDFEAKYNAEKAIEI-TPARISDELTEKIQ 255
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ SL++ L R+D ++ + +F ++N GM TS
Sbjct: 256 KITSLIYDILNCKGIVRMD--YIITDKKIF----------------LLEVNTTPGMTPTS 297
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHL 260
F+ QQ +G + ++ II A R + VS H
Sbjct: 298 FIPQQTEAMGMTMQEVITEIIEDAIER----QKKSGVSQHF 334
>gi|429218700|ref|YP_007180344.1| D-alanine--D-alanine ligase [Deinococcus peraridilitoris DSM 19664]
gi|429129563|gb|AFZ66578.1| D-alanine--D-alanine ligase [Deinococcus peraridilitoris DSM 19664]
Length = 350
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 122/291 (41%), Gaps = 56/291 (19%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E VF +HG +GEDGT+Q LL G+P+ G GV+ S CMDK+ +A LA GV
Sbjct: 89 EGYDVVFPLLHGPMGEDGTVQGLLTLAGIPFVGSGVLGSAVCMDKI---MAKAVLASCGV 145
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ + + + + P I E + L L VKPA G S G++++ A DL+
Sbjct: 146 PQVAYQLATRPEWREEPQRVI--ERATALGFP-LFVKPANLGSSVGISKVRAAGDLS--- 199
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
AL+ S R +I E M +
Sbjct: 200 SALDLAF------SLDRR-------------VILEA---------------------MTR 219
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G R E+ VGV+G + S P ++ + K+ G P + + E
Sbjct: 220 GKPR--ELEVGVLGNDTPLAS--PVGELRFDAEFYDYHTKYTEGEASMHIP---ADVPRE 272
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ ++ AL G +R+D F ++GE+ + EVNT+PG T +++
Sbjct: 273 VAARVRELAITAFQALDCAGLARVDFFYVEESGELYLNEVNTMPGFTTTSM 323
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSS+G++ D L A + +D RV++E G L+VG
Sbjct: 178 VKPANLGSSVGISKVRAAGD-LSSALDLAFS-LDRRVILEAMTRGKPR----ELEVGVLG 231
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
+ P L EL+F ++Y KY + + H P P V +RE
Sbjct: 232 NDTP--LASPVGELRFDAE--------FYDYHTKYT-EGEASMHIPADVPREVAARVREL 280
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A FQ L AR+D +++ S G + ++N + G TS
Sbjct: 281 AITAFQALDCAGLARVDFFYVEES----------------GELYLNEVNTMPGFTTTSMY 324
Query: 222 FQQASKVGFSHSNILRTII 240
+ G+S+++++ ++
Sbjct: 325 PKLWEAAGWSYADLVTRLV 343
>gi|408529041|emb|CCK27215.1| D-alanine--D-alanine ligase [Streptomyces davawensis JCM 4913]
Length = 385
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 120/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLK--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ ++ E + IVD E L VKPAR G S G+ ++ +DL+
Sbjct: 180 VIRPREWQQDESAARKKIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DDLSGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E ++ +++ +
Sbjct: 232 EAIAEA--------------------------------------------QRHDPKILVE 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + + E K+ I+ TP PA +
Sbjct: 248 AALRGREIECGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ E + + ++ A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 303 AEETAEVQQLAVDAF-EAASCEGLVRADFFLT-EDGEFVINEINTMPGFTP 351
>gi|404483928|ref|ZP_11019143.1| D-alanine-D-alanine ligase [Clostridiales bacterium OBRC5-5]
gi|404342940|gb|EJZ69309.1| D-alanine-D-alanine ligase [Clostridiales bacterium OBRC5-5]
Length = 349
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 70/320 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T L ++ L
Sbjct: 94 VVFPVLHGLYGEDGTVQGLLELAKIPYVGCGVLASAVGMDKIYTKLVVDKLG-------- 145
Query: 485 KDVRRK--EDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVY 539
+R+ E +L + + + +++ + + VKP+ G S GV++ E+L
Sbjct: 146 --IRQAAYEPVLDYEAREDFEGVIKRIENRFDYPVFVKPSNAGSSRGVSKASNREELE-- 201
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
K ++E L N ++L+ E V
Sbjct: 202 -KGIKEAL------------------NHDRKVLVEETIV--------------------- 221
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
G+ E+ GV+GK G + + +K + + K++ + + L
Sbjct: 222 -GH----EVECGVLGKPGDVMASGVG-EIKSAATFYDYDAKYKLDS-LTLLDSKLPDGVR 274
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
E L +C ++ I AL G SR+D F D GE++ E+NT+PG T + ++ L E
Sbjct: 275 EKLPECAKK---IFTALDGFGLSRVDFFAKED-GEIVFNEINTMPGFT--AISMYPMLFE 328
Query: 720 QPPMYPHQFFRKVLDLGSER 739
+ +++DL ER
Sbjct: 329 AAGIGKKDLIDRLIDLAFER 348
>gi|29829221|ref|NP_823855.1| D-alanyl-alanine synthetase A [Streptomyces avermitilis MA-4680]
gi|39930866|sp|Q82JS5.1|DDL_STRAW RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|29606327|dbj|BAC70390.1| putative D-alanine-D-alanine ligase [Streptomyces avermitilis
MA-4680]
Length = 385
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 122/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLK--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ R E + IVD E L VKPAR G S G+ ++ +DL
Sbjct: 180 VIRPREWERDESAARRKIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DDLAGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E ++ H P+I++ E L
Sbjct: 232 EAVAE----------AQRHD--------PKIIV--------EALL--------------- 250
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + +S E K+ I+ TP PA +
Sbjct: 251 ---RGREIECGVLEFEDGPRASVPAEIPPAQSHAYYDFEAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + + +E A EG R D F+ ++G+ +I E+NT+PG TP
Sbjct: 303 PEETAEVRRLAVEAF-EATSCEGLVRADFFLT-EDGDFVINEINTMPGFTP 351
>gi|55981556|ref|YP_144853.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB8]
gi|81363879|sp|Q5SHZ3.1|DDL_THET8 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|160286257|pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
gi|160286258|pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
gi|160286259|pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate
From Thermus Thermophilus Hb8
gi|160286261|pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
gi|160286262|pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
gi|160286263|pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With
Amppnp From Thermus Thermophilus Hb8.
gi|189096109|pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
gi|189096110|pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
gi|189096111|pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
gi|189096112|pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
From Thermus Thermophius Hb8
gi|189096113|pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
gi|189096114|pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
gi|189096115|pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
gi|189096116|pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
And D-Alanine From Thermus Thermophius Hb8
gi|189096117|pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
gi|189096118|pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
And D-Alanine:d-Alanine From Thermus Thermophius Hb8
gi|55772969|dbj|BAD71410.1| D-alanine--D-alanine ligase [Thermus thermophilus HB8]
gi|74381947|emb|CAJ29881.1| D-alanine:D-alanine ligase [Thermus caldophilus]
Length = 319
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 115/312 (36%), Gaps = 82/312 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L+ E VF +HG GEDGT+Q LE G PY G GV AS CMDK L+ LA
Sbjct: 69 LSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDK---DLSKRVLAQ 125
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK E VKPA G S G++R+ +DL
Sbjct: 126 AGVPVVPWVAVRK------------GEPPVVPFDPPFFVKPANTGSSVGISRVERFQDL- 172
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 173 -------EAALAL--------------------------------------AFRYDEKAV 187
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 188 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 245
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E + Q + L A L + G +R+D F+ GE+ + E+NT+PG TP++
Sbjct: 246 TQETV----QELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTS------ 293
Query: 717 LSEQPPMYPHQF 728
MYP F
Sbjct: 294 ------MYPRLF 299
>gi|359453296|ref|ZP_09242615.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20495]
gi|358049585|dbj|GAA78864.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20495]
Length = 306
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 129/321 (40%), Gaps = 82/321 (25%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
+G D P S+ W +L + N VFIA+HG GEDGT+Q LE +PYTG V+
Sbjct: 39 SGIDAIAFDPQSRSL--W-ELKELNVERVFIALHGRGGEDGTVQGALEFMNLPYTGSNVL 95
Query: 458 ASKTCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 515
S MDK+ HL L+ V K+ I+D + K +
Sbjct: 96 GSALAMDKIRC----KHLFKSAGLSTAPYAVVDAKKGFDAVAIMD---------EFKKVM 142
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
VKP+ +G S G+A+ A++ LEE L N+F
Sbjct: 143 VKPSHEGSSIGMAQASNAQE-------LEEAL----ANAFK------------------- 172
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESG 632
F SQ + +WV E TV V+G + P + +
Sbjct: 173 ---------FDSQVLVE-----------QWVTGREFTVTVLGD-----EVQPVIEMTTPN 207
Query: 633 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVD 691
+ K+Q T P S TE L Q I L A + + G+ R+DA + +
Sbjct: 208 GFYDYQAKYQSSTTQYHCPANLSKHDTEHL----QEISLDAFDLVGASGWGRVDAMQD-E 262
Query: 692 NGEVLIIEVNTVPGMTPSTVL 712
G ++EVNTVPGMT +++
Sbjct: 263 QGHFYLLEVNTVPGMTEKSLV 283
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 39/202 (19%)
Query: 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
KV+VKP+ GSSIG+ A L++A + D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQASNA-QELEEALANAFK-FDSQVLVEQWVT-GREFTVTVL--- 193
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G + PV+ + T + ++Y+ KY + YH P +
Sbjct: 194 -GDEVQPVIEMTT--------------PNGFYDYQAKY-QSSTTQYHCPANLSKHDTEHL 237
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+E + F +G + R+D E G ++N + GM +
Sbjct: 238 QEISLDAFDLVGASGWGRVDAM-----------------QDEQGHFYLLEVNTVPGMTEK 280
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A G S ++ I+
Sbjct: 281 SLVPMAAKANGASFEQLVVRIL 302
>gi|114793805|pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-alanine: D-alanine
Ligase (ddl) From Thermus Caldophilus: A Basis For The
Substrate-induced Conformational Changes
Length = 322
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 115/312 (36%), Gaps = 82/312 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L+ E VF +HG GEDGT+Q LE G PY G GV AS CMDK L+ LA
Sbjct: 72 LSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDK---DLSKRVLAQ 128
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK E VKPA G S G++R+ +DL
Sbjct: 129 AGVPVVPWVAVRK------------GEPPVVPFDPPFFVKPANTGSSVGISRVERFQDL- 175
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 176 -------EAALAL--------------------------------------AFRYDEKAV 190
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 191 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 248
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E + Q + L A L + G +R+D F+ GE+ + E+NT+PG TP++
Sbjct: 249 TQETV----QELALKAYKVLGVRGMARVDFFLA--EGELYLNELNTIPGFTPTS------ 296
Query: 717 LSEQPPMYPHQF 728
MYP F
Sbjct: 297 ------MYPRLF 302
>gi|222112147|ref|YP_002554411.1| d-alanine--d-alanine ligase [Acidovorax ebreus TPSY]
gi|254767729|sp|B9MFR0.1|DDL_ACIET RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|221731591|gb|ACM34411.1| D-alanine/D-alanine ligase [Acidovorax ebreus TPSY]
Length = 332
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 126/297 (42%), Gaps = 75/297 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKAHGYSRCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLC 531
K + R D L TP +V E Q + VKP+R+G + G+ +
Sbjct: 112 --------KRIWRA-DGLPTPDWRLVSSSAETAQAFQELGAPMIVKPSREGSTIGLTK-- 160
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
V +L +C +A+ + + PE+L E F++ D
Sbjct: 161 --------VTSLGQC---------EQAYRLAAQHD--PEVLC-EQFIDGD---------- 190
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
E T ++G+ G+ +P + ++ + K+ T +
Sbjct: 191 ---------------ETTCPILGQ-GAEARALPVIRIEAPQGNYDYQNKYF--TDVTQYH 232
Query: 652 PPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + EA ++ QRI + A L G++R D + + + ++E+NT PGMT
Sbjct: 233 CPSGL--PEAEEREIQRIVVQAYRTLGCRGWARADIMIRASDRKPFLLEINTSPGMT 287
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 38/206 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGI--ILEGIDDRVVVELFLEGGSEFTAIVLDV 97
++VKP+R GS+IG+T + SL + + + D V+ E F++ G E T +L
Sbjct: 145 MIVKPSREGSTIGLT----KVTSLGQCEQAYRLAAQHDPEVLCEQFID-GDETTCPILGQ 199
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G+ PV+ + QG+ ++Y+ KY T YH P P
Sbjct: 200 GAEARALPVIRIEAP-----QGN---------YDYQNKYF-TDVTQYHCPSGLPEAEERE 244
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I+ ++ LG +AR D S F +IN GM
Sbjct: 245 IQRIVVQAYRTLGCRGWARADIMIRASDRKPF----------------LLEINTSPGMTG 288
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHA 243
S + A+ G S+ ++ I+ A
Sbjct: 289 HSLVPMSANASGISYPDLCLRILASA 314
>gi|358725179|gb|AEU25673.1| D-alanine-D-lactate ligase [uncultured bacterium]
Length = 345
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 111/285 (38%), Gaps = 68/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTI 483
V +HG GEDG +Q LLE G+PY G + +S CMDK T L +A T+
Sbjct: 93 VLPVLHGKPGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTV 152
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
D + D L P+ VKPAR G S GV+++ EDL V+A
Sbjct: 153 TADEKIPTDQLTYPVF----------------VKPARSGSSFGVSKVAREEDLQGAVEAA 196
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E ++LI E + T
Sbjct: 197 REY---------------------DSKVLIEEAVIGT----------------------- 212
Query: 604 RWVEITVGVIGKCGSM-HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G + + +T+ + E + G+ + PA I ST +
Sbjct: 213 ---EIGCAVMGNGPELITGEVDQITLSHGSFKIHQESTPESGSDNSAVTVPADI-STTSR 268
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + + AL G SR+D F+ D G+V++ EVNT PGMT
Sbjct: 269 SLVQDTAKAVYRALGCRGLSRVDLFLTED-GKVVLNEVNTFPGMT 312
>gi|294787296|ref|ZP_06752549.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
gi|294484652|gb|EFG32287.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
Length = 400
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 46/289 (15%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE G+PY G GV+AS CMDK T + L I
Sbjct: 125 AVFPVLHGPYGEDGTIQGLLEMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGIT 184
Query: 485 KDVRRKEDLLK-TPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
D R + P + +L + + L VKP+R G S GV ++ D T
Sbjct: 185 VDTRSYDSAQGFDPQGKVLCDLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQAD 244
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI---LFSSQSTNKNADRLMW 599
L + + + ++ E ++ EI + + + +K R W
Sbjct: 245 LAAAVHEAARHDWR---------------VLVEEGIKAREIECAVLAPRHGDKP--RTSW 287
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
G EI + G +G + K+ + ++ P + +
Sbjct: 288 PG-----EIVLDEPG----------------NGAFYDFDSKYMDSSASHVEVP--AKLPQ 324
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E L + ++ A+ +G SR+D FV + G V++ E+NT+PG TP
Sbjct: 325 ETLQEVRRVAARAFIAVDGDGLSRVDTFVT-EEGTVIVNEINTLPGFTP 372
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 42 VKPTRAGSSIGVT-VAYGVIDSLKKAK--GIILEGI--DDRVVVELFLEGGSEFTAIVLD 96
VKP+RAGSS GVT V Y + ++A + E D RV+VE ++ E VL
Sbjct: 218 VKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEGIKA-REIECAVLA 276
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G P P E+ L G+ A +++ KY+ + P + P +
Sbjct: 277 PRHG--DKPRTSWPGEIVLDEPGN------GAFYDFDSKYMDSSASHVEVPAKLPQETLQ 328
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A+ F + +R+D + TE GT++ +IN + G
Sbjct: 329 EVRRVAARAFIAVDGDGLSRVDTFV-----------------TEEGTVIVNEINTLPGFT 371
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
S + G S+ ++ T+I
Sbjct: 372 PISMYSKAWEATGVSYRELITTLI 395
>gi|421890636|ref|ZP_16321491.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
solanacearum K60-1]
gi|378964003|emb|CCF98239.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
solanacearum K60-1]
Length = 331
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 117/308 (37%), Gaps = 71/308 (23%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P +LA + V I++HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 51 DAHPFDPGTQPVAELATQGFHRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAM 110
Query: 464 DKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK AT L H D +L D + D L P++ VKPA
Sbjct: 111 DKEATKRLWQTHGLPTPDFVMLHAGADWQAVADRLGLPLI----------------VKPA 154
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R+G S G+ ++ +L P ++ +A + ++ E F+E
Sbjct: 155 REGSSIGLTKVTSVAEL---------------PAAYEKAARL-------DRDVMAEQFIE 192
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D E+T VIG+ G + +P + + +
Sbjct: 193 GD-------------------------ELTCAVIGE-GDSTTALPLIRIVAPQANYDYQH 226
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 699
K+ P P + E + + + L G+ R D + + ++E
Sbjct: 227 KYFTDDTRYECPAP---IPAEVAARVQALVVQAYRGLGCRGWGRADIMLRKHDNAPFLLE 283
Query: 700 VNTVPGMT 707
+NT PGMT
Sbjct: 284 MNTSPGMT 291
>gi|344172524|emb|CCA85168.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
syzygii R24]
Length = 331
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 114/295 (38%), Gaps = 73/295 (24%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH-- 474
LA + V I++HG GEDGT+Q LLE G+PYTG GV+AS MDK AT L H
Sbjct: 65 LATQGFHRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGL 124
Query: 475 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
D +L D + D L P++ VKPAR+G S G+ ++
Sbjct: 125 PTPDFAMLHAGADWQAVADRLGLPLI----------------VKPAREGSSIGLTKVTSV 168
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
+L P ++ +A + ++ E F+E D
Sbjct: 169 AEL---------------PAAYEKAARL-------DRDVMAEQFIEGD------------ 194
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP- 652
E+T VIG+ S +L V + + F T P
Sbjct: 195 -------------ELTCAVIGEGESATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPI 241
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
PA + + + + + L G+ R D + + ++E+NT PGMT
Sbjct: 242 PADVAA-----RVQALVVQAYRGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMT 291
>gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
Length = 390
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 118/295 (40%), Gaps = 70/295 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK--VATSLALNHLADLGVLTI 483
VF +HG GEDGT+Q LL+ G+PY G GV AS T MDK + LA + L +G T+
Sbjct: 133 VFPLLHGPFGEDGTIQGLLDMSGLPYVGSGVFASATAMDKQHMKRILAASGLP-VGPYTV 191
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
VR + L E +L + VKPAR G S G++R+ DL KA
Sbjct: 192 ---VRPGQTL---------SETERELLGLPVFVKPARGGSSIGISRVDAWADLDTAFKAA 239
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
P++L+ V
Sbjct: 240 RSS---------------------DPKVLVEAAIVGR----------------------- 255
Query: 604 RWVEITVGVIGK---CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI GV+ + G S+ +TV S E K+ G L P + + E
Sbjct: 256 ---EIECGVLDRLDGSGPEASVPAEITVTSSAGFYDFEAKYV-SDGARLDVP--AQLPHE 309
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
++ + AL G +R+D FV G++++ EVNT+PG T ST + Q
Sbjct: 310 LTERVRATATAAYEALDCAGLARVDMFVT-PAGDIVLNEVNTMPGFT-STSMFPQ 362
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 27/197 (13%)
Query: 40 VVVKPTRAGSSIGVTV--AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDV 97
V VKP R GSSIG++ A+ +D+ KA D +V+VE + G E VLD
Sbjct: 210 VFVKPARGGSSIGISRVDAWADLDTAFKAA----RSSDPKVLVEAAIV-GREIECGVLDR 264
Query: 98 --GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
GSG P +P E+ V +++ KY+ + P + P +
Sbjct: 265 LDGSG----PEASVPAEIT--------VTSSAGFYDFEAKYV-SDGARLDVPAQLPHELT 311
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+R A+ ++ L AR+D + P+ V + T G T T +F + SG+
Sbjct: 312 ERVRATATAAYEALDCAGLARVDMFVTPAGDIVLNEVNTMPGFTS--TSMFPQVWAASGL 369
Query: 216 E---QTSFLFQQASKVG 229
+ T L Q A + G
Sbjct: 370 DFAALTDRLVQLALRDG 386
>gi|407796878|ref|ZP_11143829.1| D-alanyl-alanine synthetase A [Salimicrobium sp. MJ3]
gi|407018776|gb|EKE31497.1| D-alanyl-alanine synthetase A [Salimicrobium sp. MJ3]
Length = 366
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 137/352 (38%), Gaps = 122/352 (34%)
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK------------- 465
A E VF +HG +GEDG++Q +L +PY GP ++ S CMDK
Sbjct: 96 ALEQLDVVFPILHGTLGEDGSIQGMLRIANLPYVGPDILGSAVCMDKDVAKRLLREGGLE 155
Query: 466 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 525
VA SL L D G +T +K R L TP +KPA G S
Sbjct: 156 VAKSLTLRK-RDRGEVTFHKAAR----TLGTP----------------FFIKPASQGSSV 194
Query: 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585
GV+++ + +AL E L ++LI E
Sbjct: 195 GVSKVKTE---EEFEEALSEAFLY------------------DKKVLIEE---------- 223
Query: 586 SSQSTNKNADRLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKF 641
N E+ ++G K + ++P +GD S E K+
Sbjct: 224 ----------------NVDGRELECAILGNEQPKASQIGEILP------AGDFYSYESKY 261
Query: 642 --QGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEV 695
+ G G+ L PA + E K+RI A L+ EG +R+D F+ + G++
Sbjct: 262 IDESGAGLQL---PAQLTDNE-----KERIRTAAVRAFEILECEGMARVDFFL-TEEGKL 312
Query: 696 LIIEVNTVPGMTPSTVLIHQALSEQPPM-------YPHQFFRKVLDLGSERF 740
+I E+NT+PG T +S P + YP + ++L LG +R+
Sbjct: 313 VINEINTIPGFT--------KISMYPKLWDISGIPYP-KLIDELLQLGIQRY 355
>gi|315227145|ref|ZP_07868932.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105 =
JCM 12538]
gi|315119595|gb|EFT82728.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105 =
JCM 12538]
Length = 405
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 46/289 (15%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE G+PY G GV+AS CMDK T + L I
Sbjct: 130 AVFPVLHGPYGEDGTIQGLLEMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGIT 189
Query: 485 KDVRRKEDLLK-TPIVDIWHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
D R + P + +L + + L VKP+R G S GV ++ D T
Sbjct: 190 VDTRSYDSAQGFDPQGKVLCDLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQAD 249
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI---LFSSQSTNKNADRLMW 599
L + + + ++ E ++ EI + + + +K R W
Sbjct: 250 LAAAVHEAARHDWR---------------VLVEEGIKAREIECAVLAPRHGDKP--RTSW 292
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
G EI + G +G + K+ + ++ P + +
Sbjct: 293 PG-----EIVLDEPG----------------NGAFYDFDSKYMDSSASHVEVP--AKLPQ 329
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E L + ++ A+ +G SR+D FV + G V++ E+NT+PG TP
Sbjct: 330 ETLQEVRRVAARAFIAVDGDGLSRVDTFVT-EEGTVIVNEINTLPGFTP 377
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 42 VKPTRAGSSIGVT-VAYGVIDSLKKAK--GIILEGI--DDRVVVELFLEGGSEFTAIVLD 96
VKP+RAGSS GVT V Y + ++A + E D RV+VE ++ E VL
Sbjct: 223 VKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEGIKA-REIECAVLA 281
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G P P E+ L G+ A +++ KY+ + P + P +
Sbjct: 282 PRHG--DKPRTSWPGEIVLDEPGN------GAFYDFDSKYMDSSASHVEVPAKLPQETLQ 333
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A+ F + +R+D + TE GT++ +IN + G
Sbjct: 334 EVRRVAARAFIAVDGDGLSRVDTFV-----------------TEEGTVIVNEINTLPGFT 376
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
S + G S+ ++ T+I
Sbjct: 377 PISMYSKAWEATGVSYRELITTLI 400
>gi|345432591|dbj|BAK68937.1| D-alanylalanine synthetase [Vibrio parahaemolyticus]
Length = 282
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 114/297 (38%), Gaps = 75/297 (25%)
Query: 422 NQATVFIA--VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
NQ FI +HG GE G +QSL E G+PY G G AS +K+ + L + L
Sbjct: 50 NQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL---- 105
Query: 480 VLTINKDVRRKEDLLKTPIVDI-WHELTSKLQCK-------TLCVKPARDGCSTGVARLC 531
D+ TP + + ++ + +Q + + VK AR G S G
Sbjct: 106 ------------DIPNTPYLFLTRNDEHAHIQAEQAFEKWGKVFVKAARQGSSVG----- 148
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
C + ++A + + F +D++L
Sbjct: 149 --------------CYSVTEKQAIAKA--------------VNDAFGYSDQVLVEKAVKP 180
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+ E+ V G +H P + G S +EK+ + +LT
Sbjct: 181 R--------------ELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSH-SLTE 225
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
A ++ E +DK + E + + L SRID F+ DN E+ + EVNT PGMTP
Sbjct: 226 VEAKNLTQEQIDKIRHASETVFKQMNLRHLSRIDFFLTEDN-EIYLNEVNTFPGMTP 281
>gi|225028154|ref|ZP_03717346.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353]
gi|224954466|gb|EEG35675.1| D-ala D-ala ligase N-terminal domain protein [Eubacterium hallii
DSM 3353]
Length = 353
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 131/323 (40%), Gaps = 74/323 (22%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE +PY G GV+AS MDK T + ++ + +
Sbjct: 96 VVFPVLHGMNGEDGTVQGLLELAAIPYVGCGVLASACSMDKFYTKIVVDSIGVRQAKFVG 155
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVK 541
VRR E + E+ ++++ + VKP++ G S GV++ AE+ +
Sbjct: 156 --VRRHE-------LTHMDEVVARVEAGVPYPVFVKPSKAGSSQGVSK---AENREELID 203
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
AL + + H +IL+ E V
Sbjct: 204 AL----------NLAAKH--------DSKILVEETIVGR--------------------- 224
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE- 660
EI GV+G M G++LS EE + N +++ E
Sbjct: 225 -----EIECGVLG--------MNEPKASGVGEVLSAEEFYSYDAKYN-NEESRTVVDPEL 270
Query: 661 ---ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
++ ++ I AL G SR+D F+ D EV+ E+NT+PG T + ++ L
Sbjct: 271 PEGKAEEIRKDAVAIFKALDCSGLSRVDFFLTKDTNEVVFNEINTLPGFT--AISMYPML 328
Query: 718 SEQPPMYPHQFFRKVLDLGSERF 740
E + +K++DL R+
Sbjct: 329 WEARGLSKKALVQKLIDLAMNRY 351
>gi|383756811|ref|YP_005435796.1| D-alanine--D-alanine ligase [Rubrivivax gelatinosus IL144]
gi|381377480|dbj|BAL94297.1| D-alanine--D-alanine ligase Ddl [Rubrivivax gelatinosus IL144]
Length = 316
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 130/333 (39%), Gaps = 76/333 (22%)
Query: 385 NDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLL 444
N ++E L++ D P + E +L FIA+HG GEDGT+Q L
Sbjct: 26 NGVLEALRRAG-------VDAQPFDPAERELAELKHAGFERAFIALHGRHGEDGTVQGAL 78
Query: 445 EAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 502
E +PYTG GVMAS MDKV T A L ++ + + +ED++ P
Sbjct: 79 ELLRIPYTGSGVMASAIAMDKVMTKRIWAAEGLPTPRWAWLSPEHQAREDVVAVP----- 133
Query: 503 HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 562
KL L VKP R+G S G+ ++ +S +
Sbjct: 134 ----DKLGL-PLIVKPPREGSSIGITKVA----------------------GYSEMQDAV 166
Query: 563 EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 622
++ + ++ E F++ +E+T V+G+ S +L
Sbjct: 167 KLASEYDADVLCEEFIDG-------------------------IEVTCAVLGEGASARAL 201
Query: 623 MPSVTVKESGDILSLEEK-FQGGTGINLTP--PPASIMSTEALDKCKQRIELIANALQLE 679
P + + G E K F TG + PPA + L R+ L
Sbjct: 202 -PVIRIVAPGGNYDFEHKYFSEETGYHCPSGLPPAEEAEIQRLTLAAYRL------LGCR 254
Query: 680 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
G+ R D + + + ++E+NT PGMT +++
Sbjct: 255 GWGRADLMIRESDRKPFLLEMNTSPGMTSHSLV 287
>gi|257792839|ref|YP_003183445.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243]
gi|257476736|gb|ACV57056.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243]
Length = 307
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 134/326 (41%), Gaps = 73/326 (22%)
Query: 389 EGLKKHSW-FTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAE 447
E L++ + T D AD+ ++ I+ +A F+ +HG GEDGT+Q LLE
Sbjct: 29 EALEEAGYTVTQLDPADKEDLKRLIDGPFDVA-------FLCLHGKYGEDGTVQGLLETI 81
Query: 448 GVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTS 507
G+PY G GV +S MDKV + L + G+LT +K D +
Sbjct: 82 GLPYIGSGVWSSALAMDKVKSKL---YYEQAGILTPPSVPLQKGDSYDV------DSIVE 132
Query: 508 KLQCKTLC-VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 566
KL T C VKP +G + GV E +A+E+ +
Sbjct: 133 KL--GTHCVVKPGTEGSALGV---FIVEGAAAIGEAIEKAF------------------D 169
Query: 567 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 626
E+L+ E +++ E +TV VIG + +P +
Sbjct: 170 IDSEVLV-ERYIKGKE-------------------------LTVAVIGD--AEVEALPII 201
Query: 627 TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA 686
+ D E K+ G +L P P S +T + + R AL EG SR D
Sbjct: 202 EIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVRAH---RALSCEGVSRSD- 257
Query: 687 FVNVDNGEVLIIEVNTVPGMTPSTVL 712
F+ ++G +E NT+PGMT +++L
Sbjct: 258 FILEEDGSCWTLETNTIPGMTGTSLL 283
>gi|119943830|ref|YP_941510.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
gi|119862434|gb|ABM01911.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
Length = 380
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 132/316 (41%), Gaps = 60/316 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q +LE GVPY G GV AS C+DK AT + + + D+ V+
Sbjct: 107 VFPVLHGLNGEDGTIQGMLEFMGVPYVGCGVSASAFCIDKEATKV-ICQVNDIPVMDYTA 165
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V++ E + +I +++ K+ VKPAR G S G+
Sbjct: 166 -VKKYE--WENSTENIINDIQKKMNY-PFYVKPARLGSSIGI------------------ 203
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
SRA +E+ + ++ V ++ + S +
Sbjct: 204 ----------SRAENTVELKTSLKDAFKYDCKVVVEQGVESPR----------------- 236
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG-INLTPPPASIMSTEALDK 664
E+TVGV+G + + S + + K+ G TG L P P E ++K
Sbjct: 237 -ELTVGVMGIDDQVSLSAIGEFSRGSNLYFNFDSKY-GKTGHKGLVPAPLEENIQEIIEK 294
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
LI +L GF+RID F+ D +V + E+NT+PG + ++ M
Sbjct: 295 YSH---LIFKKFELSGFARIDYFLCGD--KVYLNEINTMPGFETGDTFMRIWQNKGVDM- 348
Query: 725 PHQFFRKVLDLGSERF 740
+F K ++ G F
Sbjct: 349 -QKFIDKAIEYGVLSF 363
>gi|349574846|ref|ZP_08886778.1| D-alanine-D-alanine ligase B [Neisseria shayeganii 871]
gi|348013533|gb|EGY52445.1| D-alanine-D-alanine ligase B [Neisseria shayeganii 871]
Length = 304
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 128/318 (40%), Gaps = 84/318 (26%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD P I W +L + F +HG GEDGT+Q++L+A G+PYTG GV A
Sbjct: 42 GFD-----PKEQDI--W-QLKAQGFQVAFNVLHGTYGEDGTVQAVLDALGIPYTGCGVAA 93
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK T L L + VL + D E L P L
Sbjct: 94 SALGMDKYRTKLVWLALGLPVPEFAVLREDSDFAAVEQQLGLP----------------L 137
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574
VKP+ +G S GV VK E L + HG EIL
Sbjct: 138 FVKPSTEGSSVGV------------VKVKEAGRLPAVLDEVKHLHG---------EIL-- 174
Query: 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 634
A+R + G E T ++G+ +PS+ + + +
Sbjct: 175 -------------------AERCIDGG-----EYTCAILGQ-----DALPSIRIIPANEF 205
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
E K+ + P S + + + ++ + +A+ +G+ R+D F+ NG+
Sbjct: 206 YDYEAKYHRDDTVYQCP---SDLEADQEAEIRRLAKAAFDAVGGKGWGRVD-FLKDRNGK 261
Query: 695 VLIIEVNTVPGMTPSTVL 712
+ ++E+NTVPGMT +++
Sbjct: 262 LYLLEINTVPGMTDHSLV 279
>gi|212712759|ref|ZP_03320887.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
30120]
gi|212684675|gb|EEB44203.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
30120]
Length = 306
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 132/317 (41%), Gaps = 73/317 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGT+Q +LE G+PYTG GVMAS MDK+ T L A L V
Sbjct: 58 AFIALHGRGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTK-QLWQGAGLSVSPYIS 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R+K +K +L +++ L VKP+ +G S G+++ V +L
Sbjct: 117 LNRQKYTNIKK------EQLAQQVKHLGLPLIVKPSLEGSSVGMSK----------VDSL 160
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+E P + IE+ + L+ E
Sbjct: 161 DEL-----PEA-------IELAFQFDDTLLIE---------------------------- 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV V+G ++PS+ ++ G E K+ P S ++ +
Sbjct: 181 KWLSGPEYTVAVLG-----DEVLPSIRIQPPGIFYDYEAKYLSDETQYFCP---SGLTND 232
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
K A+ G+ R+D + D GE ++EVNT PGMT +++ A Q
Sbjct: 233 LEAKLADMAMKAYQAVGCRGWGRVDVMQDSD-GEFYLLEVNTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDLGS 737
M Q ++L+L S
Sbjct: 290 AGMDFSQLVVRILELAS 306
>gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI]
gi|190359201|sp|A5D2F9.1|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
[Pelotomaculum thermopropionicum SI]
Length = 318
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 119/297 (40%), Gaps = 59/297 (19%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
++ +E FIA+HG GEDGT+Q LLE +PYTG GV+AS MDK AT
Sbjct: 49 RIKEERIDLAFIALHGRYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAAT-------- 100
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
K + + E L P + L K +K + CS R+C L
Sbjct: 101 --------KKIIQYEGLPTPPFM---------LVEKKEALKESLQACSE---RICREMGL 140
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ VKA P I FV +E + + + D
Sbjct: 141 PLVVKA------------------------PTQGSTIGMSFVHKEEDMAGALELAYDYDP 176
Query: 597 L-MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
+ + + R E+T ++G + +P + + + + + K+ G ++ PP
Sbjct: 177 VALVEQFIRGTEVTASILGNEEPVA--LPLIEIVSATGVYDYKAKYTAGMSDHIIPPRIP 234
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
A+ K +L G +R+D F+ G I+EVNT+PGMT +++
Sbjct: 235 EKQQNAIKKLAVS---TFKSLGCRGLARVD-FIVDKQGNPFILEVNTIPGMTATSLF 287
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 38/202 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+VVK GS+IG++ + D + + D +VE F+ G +E TA +L
Sbjct: 142 LVVKAPTQGSTIGMSFVHKEEDMAGALE--LAYDYDPVALVEQFIRG-TEVTASILG--- 195
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSI 158
+ PV L P +++ +++Y+ KY T ++ H PPR P N+I
Sbjct: 196 --NEEPVAL-PL---------IEIVSATGVYDYKAKY--TAGMSDHIIPPRIPEKQQNAI 241
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
++ A F+ LG AR+D + + G ++N I GM T
Sbjct: 242 KKLAVSTFKSLGCRGLARVD-----------------FIVDKQGNPFILEVNTIPGMTAT 284
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S A G +++ ++
Sbjct: 285 SLFPDAARAAGIEFPDLIEKLV 306
>gi|434403092|ref|YP_007145977.1| D-alanine--D-alanine ligase [Cylindrospermum stagnale PCC 7417]
gi|428257347|gb|AFZ23297.1| D-alanine--D-alanine ligase [Cylindrospermum stagnale PCC 7417]
Length = 359
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 117/289 (40%), Gaps = 62/289 (21%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F +HG GEDGT+Q LL VP+ G GV+ S T MDK+ +A A G+ +
Sbjct: 92 FPILHGPNGEDGTIQGLLSLMQVPFVGSGVLGSATGMDKIGMKVA---FAQAGLPQVKYQ 148
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+ + P V + +L +++ + VKPA G S G+A++ +L AL
Sbjct: 149 ALTRSQIWSNPCV--FPKLCDQIEAELGYPCFVKPANLGSSVGIAKVRSRSELEA---AL 203
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ S+ R R++ +
Sbjct: 204 DNA------ASYDR--------------------------------------RIIVEAGV 219
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E+ V+G + S++ +T D E K+ G L P P E +
Sbjct: 220 VAREVECAVLGNDQAQASIVGEITFDS--DFYDYETKYTQGKADLLIPAPL----PEGII 273
Query: 664 KCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ Q + L+A A+ G SR+D F GE+LI E+NT+PG T +++
Sbjct: 274 QRIQEMALLAFAAVDAAGLSRVDFFYVEATGEILINEINTLPGFTATSM 322
>gi|365131192|ref|ZP_09341759.1| D-alanine-D-alanine ligase [Subdoligranulum sp. 4_3_54A2FAA]
gi|363618858|gb|EHL70195.1| D-alanine-D-alanine ligase [Subdoligranulum sp. 4_3_54A2FAA]
Length = 383
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 115/283 (40%), Gaps = 58/283 (20%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE G+PY G GV+ S CMDK+ + ++ G+
Sbjct: 123 VVFPVLHGKNGEDGTIQGLLELAGLPYVGCGVLGSAVCMDKIIANRVMDA---AGIPRCE 179
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
D E + + I KL VKPA G S G+++ A D+ A++
Sbjct: 180 WDC--MERWQRPELAAIARRAAEKLGWPIF-VKPANAGSSVGISK---ARDMAELEAAVD 233
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
L SR ++FE FV+ E+ + + ++
Sbjct: 234 LAL-----QHDSR--------------VVFERFVQGQEVECAVRGNDE------------ 262
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
+ P + S + + ++K+ GT P + ++ E LD+
Sbjct: 263 --------------VSGTHPG-EILASAEFYTYDDKYISGTSRVAIP---AQLAPEKLDE 304
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ AL +G +R+D FV VL+ E+NT+PG T
Sbjct: 305 VRDLAVRAYRALCCKGLARVDFFVEHGTQRVLLNEINTLPGFT 347
>gi|424918910|ref|ZP_18342274.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392855086|gb|EJB07607.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 308
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 135/324 (41%), Gaps = 78/324 (24%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD+ + + ++E KLA VF A+HG GEDGT+Q +LE +PYT GV+A
Sbjct: 35 GFDVT-RIDVARDVSE--KLAALKPDVVFNALHGPFGEDGTIQGILEYLEIPYTHSGVLA 91
Query: 459 SKTCMDKVATSL--ALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516
S MDK L A + IN+ +K P V V
Sbjct: 92 SALAMDKDKAKLVAAAAGIPVAESQVINRFAFPSTHPMKPPYV----------------V 135
Query: 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576
KP R+G S GV + ED +AH PP+++
Sbjct: 136 KPVREGSSFGV--VIVTED---------------------QAH--------PPQVVSSPE 164
Query: 577 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 636
+ +E+L + E+T GV+G+ +L + V + +
Sbjct: 165 WRYGEEVLVERYVYGR--------------ELTCGVMGET----ALGVTEVVPQGHNFYD 206
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVN---VDN 692
+ K+ G ++ P + +S K QR+ L A+ A+ G SR D + ++
Sbjct: 207 YDSKYAAGGSKHVIP---AKISPNIYQKI-QRLALRAHQAIGCRGVSRSDFRYDDRFSED 262
Query: 693 GEVLIIEVNTVPGMTPSTVLIHQA 716
GE++ +EVNT PGMTP++++ A
Sbjct: 263 GEIIWLEVNTQPGMTPTSLVPEMA 286
>gi|404399200|ref|ZP_10990784.1| D-alanyl-alanine synthetase A [Pseudomonas fuscovaginae UPB0736]
Length = 364
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 78/323 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
+F VHG +GEDG LQ LL +P+ G V+ S CMDK I+
Sbjct: 101 VIFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDK----------------DIS 144
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDL 536
K + R L TP + + ++L + L +KPA G S GV+++ AE
Sbjct: 145 KRLLRDAGLAVTPFLTVNRATATRLDFEQARAKLGLPLFIKPANQGSSVGVSKVESAE-- 202
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
F A + L F+ D++L S + +
Sbjct: 203 -----------------QFQAAMAL---------ALGFD-----DKVLVESAVSGR---- 227
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
EI ++G + S + V+ S + K+ + P A
Sbjct: 228 ----------EIECAILGNDQPVASGCGEIVVRSG--FYSYDSKYIDAEAAEVVVPAA-- 273
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+S EA ++ + L G +R+D F+ D+GEVLI EVN++PG T + ++
Sbjct: 274 ISEEASERIRSVALEAFQVLGCSGLARVDVFLT-DSGEVLINEVNSLPGFT--RISMYPK 330
Query: 717 LSEQPPMYPHQFFRKVLDLGSER 739
L + M + ++++L ER
Sbjct: 331 LWQAAGMTYSELVSRLIELALER 353
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 35/205 (17%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
+KP GSS+GV+ + + A + L G DD+V+VE + G AI+ G
Sbjct: 184 IKPANQGSSVGVSKVESA-EQFQAAMALAL-GFDDKVLVESAVSGREIECAIL-----GN 236
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
D PV G ++ + ++Y KY+ + P IR
Sbjct: 237 D-QPVA----------SGCGEIVVRSGFYSYDSKYIDAEAAEVVVPAAISEEASERIRSV 285
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A FQ LG AR+D + T+ G +L ++N + G + S
Sbjct: 286 ALEAFQVLGCSGLARVDVFL-----------------TDSGEVLINEVNSLPGFTRISMY 328
Query: 222 FQQASKVGFSHSNILRTIIGHACSR 246
+ G ++S ++ +I A R
Sbjct: 329 PKLWQAAGMTYSELVSRLIELALER 353
>gi|365156796|ref|ZP_09353092.1| D-alanine-D-alanine ligase [Bacillus smithii 7_3_47FAA]
gi|363626853|gb|EHL77818.1| D-alanine-D-alanine ligase [Bacillus smithii 7_3_47FAA]
Length = 355
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 131/328 (39%), Gaps = 86/328 (26%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTI 483
VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + H+ A+ G+ +
Sbjct: 89 VVFPLLHGPNGEDGTVQGMLELLNIPYVGNGVLASAAGMDKV----IMKHIFAEAGLAQV 144
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+ + K ++ +ELT K VKPA G S G+ + ++L KA
Sbjct: 145 DYVWFMRSHWEKNQ--EVTYELTEKEIGYPCFVKPANLGSSVGINKCSNRDELE---KAF 199
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+E + R +++ +
Sbjct: 200 KEAF------QYDR--------------------------------------KIIVEQGV 215
Query: 604 RWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+ EI +GV+G KC ++P + + K+Q + + P
Sbjct: 216 KAREIEMGVLGNDDPKCSVPGEIVP------KKEFYDYKAKYQDNSTQLIIP-------A 262
Query: 660 EALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL--- 712
E +K K +E IA AL G R D F+ D G VLI EVNT+PG TP ++
Sbjct: 263 EISEKVKAEMEQIAIKAFQALDCSGLVRADFFLTED-GRVLINEVNTMPGFTPVSMFPLL 321
Query: 713 -IHQALSEQPPMYPHQFFRKVLDLGSER 739
H L YP Q ++DL +R
Sbjct: 322 WKHSGLD-----YP-QLIETLIDLAIKR 343
>gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
PB013-T2-3]
gi|417886564|ref|ZP_12530708.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
F0423]
gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
PB013-T2-3]
gi|341592955|gb|EGS35812.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
F0423]
Length = 377
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 106/284 (37%), Gaps = 63/284 (22%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
+ +HG +GEDGT+Q L + PY G G+ AS DK T LN
Sbjct: 98 YPVIHGNLGEDGTIQGLFKLLKKPYVGSGISASALSFDKDLTKKMLNEAG---------- 147
Query: 487 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+R +L TP W L +L + +KPAR G S G+ R+ AE+ Y AL
Sbjct: 148 IRNTPYVLLTPENQAEYSWGRLEEEL-GNLIFIKPARQGSSVGIHRVTNAEE---YAAAL 203
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
++ + L KG
Sbjct: 204 KDAF-------------------------------------------KYDFKVLAEKGLD 220
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
R EI + ++G + S + +V V ES E KF +G+ P + D
Sbjct: 221 RPQEIEISILGNEHPVASKLGAVRVPESDPFYDYENKFVDASGVVFELPVK--LPQYLTD 278
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + L ++G SRID V+ +N L E NT+PG T
Sbjct: 279 EITEMALKAYRVLGMKGLSRIDFLVDSNNIPYL-SEPNTLPGFT 321
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 45/251 (17%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV-VKPTRAGSSIG---VTVA 56
+++ G P LL + N++E S W +L+ G ++ +KP R GSS+G VT A
Sbjct: 143 LNEAGIRNTPYVLL--TPENQAEYS-W---GRLEEELGNLIFIKPARQGSSVGIHRVTNA 196
Query: 57 YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ 116
+LK A D +V+ E L+ E +L + HPV
Sbjct: 197 EEYAAALKDAFKY-----DFKVLAEKGLDRPQEIEISILG-----NEHPVA--------S 238
Query: 117 FQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 176
G+V V E D ++Y K++ V + P + P + + I E A ++ LG+ +R
Sbjct: 239 KLGAVRVPESDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSR 298
Query: 177 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNIL 236
ID FL S ++ SE +T G FT+I+L M + S G S+S+++
Sbjct: 299 ID--FLVDSNNIPYLSEP---NTLPG---FTNISLYPQMWEVS---------GISYSDLI 341
Query: 237 RTIIGHACSRF 247
+I + F
Sbjct: 342 DRLIELGLAEF 352
>gi|317046899|ref|YP_004114547.1| D-alanine--D-alanine ligase [Pantoea sp. At-9b]
gi|316948516|gb|ADU67991.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
Length = 306
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 137/333 (41%), Gaps = 89/333 (26%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ FIA+HG GEDGTLQ++LE + +PYTG GVMAS MDK+ + L
Sbjct: 48 LNLKQQGFDKAFIALHGRGGEDGTLQAVLEFQQIPYTGSGVMASAITMDKLRSKLLWQGR 107
Query: 476 ADLGVLTINKDV---RRKEDLLKTPIVDIWHELTSKLQCKTLC----------VKPARDG 522
L K V R++++ + L +TL VKP+ +G
Sbjct: 108 G----LPAGKFVWLTRQQQE--------------NGLDAQTLAEIDALGLPVFVKPSCEG 149
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G++R+ + L P + + E F D+
Sbjct: 150 SSVGISRVNTRDAL---------------PAALA------------------EAFRHDDD 176
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
+L + + E TVG++G ++PS+ ++ + + E K+
Sbjct: 177 VLVEAFLSG--------------AEYTVGILGD-----QILPSIKIQSASEFYDYEAKYI 217
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
P S +S E + + + AL G+ R+D V+ ++ ++EVNT
Sbjct: 218 SDDTQYFCP---SGLSAEREAELQALVLAAWRALGCSGWGRVDVMVDGED-NFQLLEVNT 273
Query: 703 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
PGMT S L+ A + +P Q ++L+L
Sbjct: 274 SPGMT-SHSLVPMAAKQAGLSFP-QLVARILEL 304
>gi|358461406|ref|ZP_09171569.1| D-alanine--D-alanine ligase [Frankia sp. CN3]
gi|357073285|gb|EHI82794.1| D-alanine--D-alanine ligase [Frankia sp. CN3]
Length = 380
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 116/291 (39%), Gaps = 67/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PY G GV AS MDK AL A L V
Sbjct: 123 VFPLLHGPYGEDGTIQGLLEMAGLPYVGSGVFASAAAMDKQHMK-ALLAAAGLRVGPYAV 181
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+R E LL T +L VKPAR G S G++R+ EDL +K E
Sbjct: 182 -LRAGETLLDTD--------KERLGLPVF-VKPARGGSSIGISRVDAWEDLDTAIKTARE 231
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
P++L+ V
Sbjct: 232 S---------------------DPKVLVEAAIVGR------------------------- 245
Query: 606 VEITVGVIGKCGSMH---SLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASIMSTEA 661
EI GV+ + G S + V S E K+ T +++ PA + TE
Sbjct: 246 -EIECGVLDRLGGGEPEASAPAEIVVDSSAGFYDFEAKYVSSNTRLDV---PAD-LPTEI 300
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
D+ + AL G +R+D F+ GEV++ EVNT+PG TP+++
Sbjct: 301 ADRVRAAAAAAFRALDCAGLARVDVFLTA-AGEVILNEVNTMPGFTPTSLF 350
>gi|350264709|ref|YP_004876016.1| D-alanine--D-alanine ligase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597596|gb|AEP85384.1| D-alanine--D-alanine ligase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 361
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 122/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE VPY G GV+AS MDKV + HL
Sbjct: 88 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGVLASSAGMDKV----VMKHLF 143
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A G+ K+D ++P + ++ +L VKPA G S G+++ E+
Sbjct: 144 AQAGLAQAKYAAFLKKDWTRSP-EESCEQVEQELGYPCF-VKPANLGSSVGISKCRNREE 201
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 202 LQ---KA-------------------------------FELAFQYDRKVVVEEGINGR-- 225
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 226 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 268
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+I++ E A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 269 ---AIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 324
Query: 712 L 712
Sbjct: 325 F 325
>gi|333981995|ref|YP_004511205.1| D-alanine--D-alanine ligase [Methylomonas methanica MC09]
gi|333806036|gb|AEF98705.1| D-alanine--D-alanine ligase [Methylomonas methanica MC09]
Length = 311
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 116/292 (39%), Gaps = 78/292 (26%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG LQ++L+ G+PYTG GVMAS MDK+ T L +
Sbjct: 68 VFNIMHGRGGEDGVLQAVLDVLGLPYTGSGVMASALSMDKLRTKLCWQGMG--------- 118
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLCCAEDLTVYV 540
L TP + L C + VKPA++G S G+++ E+L
Sbjct: 119 --------LSTPKWFVLQNLLDIDACIAALGFPVIVKPAQEGSSIGMSKANSREELL--- 167
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
E L +Q + W
Sbjct: 168 -----------------------------------------EALRVAQQYRCDVYAEQWV 186
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
E TVGV+ +P++ ++ E K++ T P S ++TE
Sbjct: 187 QGK---EYTVGVLA-----GEALPAIRLETPNVFYDFEAKYRANTTQYHCP---SGLTTE 235
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + L N L ++G++R+D F++ DN +IEVNTVPGMT +++
Sbjct: 236 REQQLQALALLACNGLAVKGWARVDVFID-DNDCAQLIEVNTVPGMTDHSLV 286
>gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
Length = 354
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 130/325 (40%), Gaps = 77/325 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++ DLGV
Sbjct: 96 VVFPVLHGLFGEDGTVQGLLELARIPYVGCGVLASAVSMDKLYTKIVVD---DLGVRQAA 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ DL V +++ K + VKP+ G S GVAR E+L
Sbjct: 153 YVPVMRSDLGDMEAV------VGRVEAKFTYPVFVKPSNAGSSKGVARADSREELEA--- 203
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+ E +IL+ E M KG
Sbjct: 204 ------------------ALYEAAKHDRKILVEE----------------------MIKG 223
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE------KFQGGTGINLTPPPAS 655
EI V G L+P V G+IL+ E K+ + P
Sbjct: 224 R----EIECAVFGG-----GLVP-VEASGVGEILAAAEFYDFDAKYYNSDSRTVVNPE-- 271
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+ +A + ++ + I A+ G +R+D FV D+G V+ E+NT+PG T + ++
Sbjct: 272 -LPGDAANTVREAAKAIFRAVDGYGLARVDFFVK-DDGTVVFNEINTLPGFT--AISMYP 327
Query: 716 ALSEQPPMYPHQFFRKVLDLGSERF 740
L E + Q +++D +R+
Sbjct: 328 MLWEAAGVSKDQLVDRLVDHAFDRY 352
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 38/210 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP+ AGSS GV A DS ++ + + E D +++VE ++G E V
Sbjct: 179 VFVKPSNAGSSKGVARA----DSREELEAALYEAAKHDRKILVEEMIKG-REIECAVFGG 233
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G L+P E G ++ +++ KY + P P N+
Sbjct: 234 G---------LVPVEA----SGVGEILAAAEFYDFDAKYYNSDSRTV-VNPELPGDAANT 279
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+RE A +F+ + AR+D +F+ GT++F +IN + G
Sbjct: 280 VREAAKAIFRAVDGYGLARVD-FFVKDD----------------GTVVFNEINTLPGFTA 322
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACSRF 247
S G S ++ ++ HA R+
Sbjct: 323 ISMYPMLWEAAGVSKDQLVDRLVDHAFDRY 352
>gi|429197326|ref|ZP_19189228.1| D-alanine--D-alanine ligase N-terminal domain protein [Streptomyces
ipomoeae 91-03]
gi|428666994|gb|EKX66115.1| D-alanine--D-alanine ligase N-terminal domain protein [Streptomyces
ipomoeae 91-03]
Length = 385
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 117/290 (40%), Gaps = 67/290 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ +LE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGMLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLR--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ R E + I+D E L VKPAR G S G+ ++ DL
Sbjct: 180 VIRPREWERDESAARKKIIDFAGE-----HGWPLFVKPARAGSSIGITKVDDLSDL---- 230
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
DE + +Q ++ +++ +
Sbjct: 231 ----------------------------------------DEAIAEAQ---RHDPKIIVE 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
R EI GV+ + G S+ + ++ E K+ T + P P + T
Sbjct: 248 AAVRGREIECGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKYIDSTP-GIVPAPLTPQET 306
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ QR+ + A A EG R D F+ + G+ +I E+NT+PG TP
Sbjct: 307 AEV----QRLAVDAFEAASCEGLVRADFFLT-EEGDFVINEINTMPGFTP 351
>gi|386757058|ref|YP_006230274.1| D-alanine--D-alanine ligase [Bacillus sp. JS]
gi|384930340|gb|AFI27018.1| D-alanine--D-alanine ligase [Bacillus sp. JS]
Length = 361
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 122/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL
Sbjct: 88 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLF 143
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A G+ K+D ++P + ++ +L VKPA G S G+++ E+
Sbjct: 144 AQAGLAQAKYAAFLKKDWTRSP-KECCEQVEQELGYPCF-VKPANLGSSVGISKCRNREE 201
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 202 LQ---KA-------------------------------FELAFQYDRKVVVEEGINGR-- 225
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 226 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 268
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+I++ E A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 269 ---AIVTEEEYATISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 324
Query: 712 L 712
Sbjct: 325 F 325
>gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
Length = 404
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V +HG GEDGT+Q +LE +PY G GV+AS MDK T + LN G+ T
Sbjct: 137 VLPLLHGPYGEDGTIQGMLEMLDIPYVGCGVLASAAGMDKQVTKVLLNA---AGIPTAQH 193
Query: 486 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + D + I+D LT L VKPAR G S G+ ++ EDL ++A
Sbjct: 194 VVVHPHRWDSERELILDACEALTYP-----LFVKPARAGSSLGITKVERREDLPAAIEAA 248
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E P++L+ E VE E+ + + A + +
Sbjct: 249 REV---------------------DPKVLV-ESGVEGREVEVAVLDGHHGAAPRVAEPGE 286
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
++ + G +G+ E K+ + + P + +S + +
Sbjct: 287 IVMDASHG-------------------AGEFYDYETKYLAHDAVQMVCP--ARVSHQESE 325
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
K+ AL EG R+D F+ GE ++ EVNT+PG TP
Sbjct: 326 LLKETAARAFEALGGEGLMRVDFFLT-PRGEAVVNEVNTMPGFTP 369
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 82/205 (40%), Gaps = 27/205 (13%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP RAGSS+G+T D L A E +D +V+VE +EG E VLD G
Sbjct: 221 VKPARAGSSLGITKVERRED-LPAAIEAARE-VDPKVLVESGVEG-REVEVAVLDGHHG- 276
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
P V P E+ + ++Y KYL V P R ++E
Sbjct: 277 -AAPRVAEPGEIVMDAS-----HGAGEFYDYETKYLAHDAVQMVCPARVSHQESELLKET 330
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A+ F+ LG R+D + P V + T G FT ++ M Q S
Sbjct: 331 AARAFEALGGEGLMRVDFFLTPRGEAVVNEVNTMPG--------FTPFSMYPYMWQVS-- 380
Query: 222 FQQASKVGFSHSNILRTIIGHACSR 246
G S+++++ +I A R
Sbjct: 381 -------GLSYTDLVSELIELALER 398
>gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
Length = 376
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 46/283 (16%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q + E GVP+ G GV+AS MDK T + L + G+ +
Sbjct: 98 VFPVLHGTYGEDGTVQGVFEMAGVPFVGCGVLASSAAMDKETTKILLK---NAGIPVVPY 154
Query: 486 DVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ + + + D + E KL+ L VKP G S G +
Sbjct: 155 MCISRSQINSSSLYDKLIEEAIEKLEF-PLFVKPCAAGSSDGAS---------------- 197
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+ N + ++E + ++LI E ++ E+ S GNS
Sbjct: 198 -----LARNKRELSFALMEAFSWDNKVLI-EKAIDAREVECSVT------------GNS- 238
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
+T C + + P V + D + K+ G L P +++S + L+
Sbjct: 239 ---VTATSESDCTLLKAYGPGEIVPKH-DFYDYDAKYNDPDGAELKIP--ALLSDDKLEL 292
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
++ + + + G SR+D FV+ GE+ + E+NT+PG T
Sbjct: 293 IRETAKKAYSVINASGLSRVDFFVDRKTGEIYLNEINTIPGFT 335
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 91/254 (35%), Gaps = 38/254 (14%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA---- 56
+ G VP + S++N S L + + ++ + VKP AGSS G ++A
Sbjct: 144 LKNAGIPVVPYMCISRSQINSSSLYDKLIEEAIEKLEFPLFVKPCAAGSSDGASLARNKR 203
Query: 57 ---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEV 113
+ ++++ +++E D VE + G S + S DC
Sbjct: 204 ELSFALMEAFSWDNKVLIEKAIDAREVECSVTGNS------VTATSESDC---------T 248
Query: 114 ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCD 173
L+ G ++ K ++Y KY P + IRE A + +
Sbjct: 249 LLKAYGPGEIVPKHDFYDYDAKYNDPDGAELKIPALLSDDKLELIRETAKKAYSVINASG 308
Query: 174 FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233
+R+D +F+ T G I +IN I G + S + G +S
Sbjct: 309 LSRVD-FFVDRKT---------------GEIYLNEINTIPGFTKISMFPKMCDADGLEYS 352
Query: 234 NILRTIIGHACSRF 247
++ ++ F
Sbjct: 353 ELIDYLLKEGIENF 366
>gi|300702964|ref|YP_003744566.1| d-alanine-d-alanine ligase b, affects cell division [Ralstonia
solanacearum CFBP2957]
gi|299070627|emb|CBJ41922.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
solanacearum CFBP2957]
Length = 331
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 117/309 (37%), Gaps = 73/309 (23%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P +LA + V I++HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 51 DAHPFDPGTQPVAELATQGFHRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAM 110
Query: 464 DKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK AT L H D +L D + D L P++ VKPA
Sbjct: 111 DKEATKRLWQTHGLPTPDFVMLHAGADWQAVADRLGLPLI----------------VKPA 154
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R+G S G+ ++ +L P ++ +A + ++ E F+E
Sbjct: 155 REGSSIGLTKVTSVAEL---------------PAAYEKAARL-------DRDVMAEQFIE 192
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D E+T VIG+ S +L V + +
Sbjct: 193 GD-------------------------ELTCAVIGEGDSTTALPLIRIVAPQANYDYQHK 227
Query: 640 KFQGGTGINLTPP-PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
F T P PA + + + + + L G+ R D + + ++
Sbjct: 228 YFTDDTRYECPAPIPADVAA-----RVQALVVQAYRGLGCRGWGRADIMLRKHDNAPFLL 282
Query: 699 EVNTVPGMT 707
E+NT PGMT
Sbjct: 283 EMNTSPGMT 291
>gi|449093155|ref|YP_007425646.1| D-alanyl-alanine synthetase A [Bacillus subtilis XF-1]
gi|449027070|gb|AGE62309.1| D-alanyl-alanine synthetase A [Bacillus subtilis XF-1]
Length = 354
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 122/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL
Sbjct: 81 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLF 136
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A G+ K+D ++P + ++ +L VKPA G S G+++ E+
Sbjct: 137 AQAGLAQAKYAAFLKKDWTRSP-KESCEQVEQELGYPCF-VKPANLGSSVGISKCRNREE 194
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 195 LQ---KA-------------------------------FELAFQYDRKVVVEEGINGR-- 218
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 219 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 261
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+I++ E A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 262 ---AIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 317
Query: 712 L 712
Sbjct: 318 F 318
>gi|383815714|ref|ZP_09971123.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
gi|383295441|gb|EIC83766.1| D-alanine--D-alanine ligase [Serratia sp. M24T3]
Length = 365
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/438 (23%), Positives = 168/438 (38%), Gaps = 132/438 (30%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V +IFGG +SE +VSL S N+ + A + LL ID N D+S+
Sbjct: 6 VGIIFGGKSSEHEVSLQSARNI---VDALDQQRFDVTLLG--IDKQGEWHIN----DASN 56
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
++ + +L+ + + + +A LV GL+K+ D
Sbjct: 57 YLLNAEDPALIALNRSNQQVA------------------------LVPGLEKNQLIDTQD 92
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
H++++ +F VHG +GEDG+LQ LL +PY G GV+ S
Sbjct: 93 -------AHAMSQL--------DVIFPIVHGTLGEDGSLQGLLRMANIPYVGSGVLGSAV 137
Query: 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-------- 513
CMDK + K + R L P V LT + + +T
Sbjct: 138 CMDK----------------DVTKRLLRDAGLNVAPFV----TLTRRTRAQTSFDYVVEQ 177
Query: 514 ----LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
L +KPA G S GV+++ + Y +AL+ ++FS H
Sbjct: 178 LGLPLFIKPANQGSSVGVSKVKSRDS---YEQALD--------SAFSYDH---------- 216
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
+++ + + EI V+G S V +
Sbjct: 217 --------------------------KVLVESAIKGREIECAVLGNDFPKASTCGEVILH 250
Query: 630 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN 689
+ + S + K+ G ++ P ++ E DK + AL+ G +R+D F+
Sbjct: 251 D--EFYSYDTKYINEQGASVAIPAN--IAAEINDKIRAIAIQAYQALECRGMARVDIFL- 305
Query: 690 VDNGEVLIIEVNTVPGMT 707
+ GEV+I E+NT+PG T
Sbjct: 306 TEEGEVVINEINTLPGFT 323
>gi|320533338|ref|ZP_08034032.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320134453|gb|EFW26707.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 388
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 129/313 (41%), Gaps = 70/313 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V +HG GEDGT+Q +LE G+PY G GV+AS MDK T + L G+ T
Sbjct: 121 VLPLLHGPYGEDGTIQGMLEMMGLPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 177
Query: 486 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + P I++ LT L VKPAR G S G++++ EDL ++A
Sbjct: 178 VVVGPHTWKRDPEAILEACRSLTYP-----LFVKPARAGSSLGISKVDRPEDLRQAIEA- 231
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+RA P++L+ V + + Q + +A R+ G
Sbjct: 232 ------------ARAVD--------PKVLVESGIVGREVEVAVLQGRDDDAPRVAEPG-- 269
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL- 662
EI + + +G+ + K+ + + P AL
Sbjct: 270 ---EIAMD---------------ASQGAGEFYDYDTKYLAHDAVAMVCPARIGPEARALI 311
Query: 663 -DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
D + E A+ EG +R+D F+ D+GE ++ E+NT+PG TP +
Sbjct: 312 MDTAARAFE----AVGCEGLARVDFFLT-DSGEAVVNEINTMPGFTPFS----------- 355
Query: 722 PMYPHQFFRKVLD 734
MYP+ + LD
Sbjct: 356 -MYPYMWQVSGLD 367
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGII--LEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VKP RAGSS+G++ +D + + I +D +V+VE + G E VL
Sbjct: 205 VKPARAGSSLGISK----VDRPEDLRQAIEAARAVDPKVLVESGIVG-REVEVAVLQ--G 257
Query: 100 GFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
D P V P E+ + QG+ + ++Y KYL VA P R I
Sbjct: 258 RDDDAPRVAEPGEIAMDASQGAGE------FYDYDTKYLAHDAVAMVCPARIGPEARALI 311
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A+ F+ +G AR+D + S V + T G T + ++ + +SG++ T
Sbjct: 312 MDTAARAFEAVGCEGLARVDFFLTDSGEAVVNEINTMPGFTPFS--MYPYMWQVSGLDYT 369
Query: 219 SFLFQ 223
+ + +
Sbjct: 370 ALVSE 374
>gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
Length = 334
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 114/298 (38%), Gaps = 79/298 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L K FIA+HG GEDGT+Q +LE G+PYTG GVMAS +DK++T
Sbjct: 67 LEKAGYDRAFIALHGRYGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKIST--------- 117
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC--------VKPARDGCSTGVAR 529
K + + L P W L Q L +KP +G + G+ R
Sbjct: 118 -------KQMWQAGRLPTPP----WEVLLGPHQLAGLAERLGLPLIIKPPHEGSTLGLTR 166
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
+ + L P ++ RA I+ P ++ E FV+
Sbjct: 167 VDSLDRL---------------PAAYERAAD-IDFP------VLAERFVQGR-------- 196
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
E+TV VIG G+ +P V ++ K+ L
Sbjct: 197 -----------------ELTVAVIG-SGAAARALPIVEIRAPNGNYDYRNKYFTDDTRYL 238
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P P ++ A D E A+ EG+ R+D ++ ++EVNT PGMT
Sbjct: 239 CPAP--LVPAMAAD-IASLAEAAYRAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMT 293
>gi|37527516|ref|NP_930860.1| D-alanine--D-alanine ligase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|39930824|sp|Q7N149.1|DDL_PHOLL RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|36786951|emb|CAE16025.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase)
(D-Ala-D-Ala ligase) [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 306
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 128/316 (40%), Gaps = 75/316 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T + LT++
Sbjct: 58 VFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALSMDKLRTKQVWQGIG----LTVSP 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V ++ E + L L VKP+ +G S G+ ++
Sbjct: 114 YVSINSQQVERLTDSQLQEYVADLGLP-LIVKPSLEGSSVGMTKV--------------- 157
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
N S G +E + + D L+ +W
Sbjct: 158 -------NEISELRGALEA------------------------AFRYDVDLLV----EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G +PS+ ++ + + K+ P S +S E
Sbjct: 183 LHGPEYTVAILGDTA-----LPSIRIQPAAVFYDYDAKYWSEETQYFCP---SGLSDE-- 232
Query: 663 DKCKQRIELIANALQ---LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
K +Q EL A Q G+ R+D ++ D G+ ++EVNT PGMT +++ A
Sbjct: 233 -KEQQLAELALKAYQSVGCSGWGRVDVMMDTD-GDFYLLEVNTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDL 735
Q + Q K+L+L
Sbjct: 289 QAGLSFSQLVVKILEL 304
>gi|418515267|ref|ZP_13081448.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|410707986|gb|EKQ66435.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 318
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 119/297 (40%), Gaps = 83/297 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-----SLALN--HLA 476
VF +HG G GEDG +Q L+EA GVPYTG V+ S MDK+ T SL L+ A
Sbjct: 72 VFNVLHGHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYA 131
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L +D+ + PI+ VKPA +G S GV+R
Sbjct: 132 RLAAGASAEDIHAAARQIGLPII----------------VKPANEGSSVGVSR------- 168
Query: 537 TVYVKA-LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
V+ +A LEE + +R G L+ E +E D
Sbjct: 169 -VFDQAQLEEAV-----TLAARYDGA----------LLMEQLIEGD-------------- 198
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+TV V+G S +PS+ + G K+ L P
Sbjct: 199 -----------ELTVAVLGD-----SALPSIRIVPKGQWYDYNAKYIADDTQYLCPG--- 239
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ EA + +Q A G+ R+D + +G++ ++EVNT PGMT +++
Sbjct: 240 -LEGEAEAQIRQLALDAFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLV 295
>gi|351730449|ref|ZP_08948140.1| D-alanine--D-alanine ligase [Acidovorax radicis N35]
Length = 322
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 121/304 (39%), Gaps = 77/304 (25%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA- 471
N L ++ A FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDKV T
Sbjct: 49 NALGDLKRDGYARCFIALHGRHGEDGTVQGALELLGIPYTGPGVMASAIAMDKVMTKRVW 108
Query: 472 -LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
L + + D +++E + P EL L VKP R+G S GV ++
Sbjct: 109 LAEGLPTPRYVWLAPDRQQREVVRTVP-----DELG-----LPLIVKPPREGSSIGVTKV 158
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
D+ V + S + P++L E F++ +
Sbjct: 159 RGYSDMQEAV-------------ALSAKYD--------PDVLC-EEFIDGE--------- 187
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSL------MPSVTVKESGDILSLEEKFQGG 644
E+T V+G+ +L P + + K+Q
Sbjct: 188 ----------------EVTCPVLGQGADARALPVIRIVAPDGAYDYQNKYFTDDVKYQCP 231
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703
+G+ EA ++ QRI L A L G+ R D + + + ++E+NT
Sbjct: 232 SGL-----------PEAEEREIQRIVLEAYRTLGCRGWGRADLMIRASDRKPFLLEMNTS 280
Query: 704 PGMT 707
PGMT
Sbjct: 281 PGMT 284
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 77/205 (37%), Gaps = 34/205 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GSSIGVT G D +++A + + D V+ E F++ G E T VL G+
Sbjct: 142 LIVKPPREGSSIGVTKVRGYSD-MQEAVALSAK-YDPDVLCEEFID-GEEVTCPVLGQGA 198
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV + + D ++Y+ KY T V Y P P I+
Sbjct: 199 DARALPV--------------IRIVAPDGAYDYQNKYF-TDDVKYQCPSGLPEAEEREIQ 243
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG + R D S F ++N GM S
Sbjct: 244 RIVLEAYRTLGCRGWGRADLMIRASDRKPF----------------LLEMNTSPGMTGHS 287
Query: 220 FLFQQASKVGFSHSNILRTIIGHAC 244
+ A G S+ + I+ A
Sbjct: 288 LVPMSARASGISYEELCLRILADAA 312
>gi|427412441|ref|ZP_18902633.1| D-alanine-D-alanine ligase [Veillonella ratti ACS-216-V-Col6b]
gi|425716248|gb|EKU79232.1| D-alanine-D-alanine ligase [Veillonella ratti ACS-216-V-Col6b]
Length = 310
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 117/293 (39%), Gaps = 67/293 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF A+HG GEDG LQ LLE G+PYTG GVMA M+K ++ + G+ T
Sbjct: 60 VFNALHGKFGEDGALQGLLEMAGIPYTGSGVMAQAVGMNK---KISKDVFVGAGIPTAMA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
E + DI + + + +KPA G S GV + A +LT VK
Sbjct: 117 KSYNGETQSEA---DIVAHIKANFTIP-VVLKPATQGSSIGVTIVREASELTAAVK---- 168
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
E L++ D IL Q + +
Sbjct: 169 ------------------------EALVY------DNILVVEQYLDGH------------ 186
Query: 606 VEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E TV V+ GK +P + ++ K+ G L P P +AL +
Sbjct: 187 -EFTVPVLEGKA------LPVIEIRPHSGEYDYTSKYTTGATDYLVPAPID----DALTE 235
Query: 665 CKQRI-ELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
Q I E + LQ G RID F+ GE ++E NT+PGMT ++++ A
Sbjct: 236 KMQAIGENVYRELQCSGVIRID-FMTNKAGEPFVLEYNTIPGMTATSLVPKSA 287
>gi|21223916|ref|NP_629695.1| D-alanyl-alanine synthetase A [Streptomyces coelicolor A3(2)]
gi|289768877|ref|ZP_06528255.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
gi|6919858|sp|Q9ZBR9.1|DDL_STRCO RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|4007719|emb|CAA22403.1| D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)]
gi|289699076|gb|EFD66505.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
Length = 389
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 123/294 (41%), Gaps = 75/294 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS DK V TS L +G
Sbjct: 126 VFPVLHGPYGEDGTLQGLLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLK----VGP 181
Query: 481 LTINKDVRRKEDL--LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
+ + ++D + IVD E L VKPAR G S G+ ++ +DL
Sbjct: 182 YAVIRPREWEQDRSGARKKIVDFAGE-----HGWPLFVKPARAGSSIGITKV---DDLAG 233
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+A+EE +R H P+IL+
Sbjct: 234 LDEAIEE----------ARRHD--------PKILV------------------------- 250
Query: 599 WKGNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PAS 655
+ R EI GV+ + G S+ + E K+ I+ TP PA
Sbjct: 251 -EAALRGREIECGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKY-----IDSTPGIVPAP 304
Query: 656 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E + QR+ + A +A EG R D F+ D+ E +I E+NT+PG TP
Sbjct: 305 LTAEETAE--VQRLAVAAFDAASCEGLVRADFFLTEDD-EFVINEINTMPGFTP 355
>gi|358725096|gb|AEU25611.1| D-alanine-D-lactate ligase [uncultured bacterium]
Length = 347
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 117/288 (40%), Gaps = 74/288 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK-----VATSLALNHLADLGV 480
V +HG +GEDG +Q LLE G+PY G V +S CMDK VA S A+ D
Sbjct: 95 VLPVLHGKLGEDGAMQGLLELSGIPYVGCDVQSSAVCMDKRLAYIVARSAAIA-TPDFWT 153
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+T N+D+ D P+ VKPAR G S GV+++
Sbjct: 154 VTANQDI--DADRFTYPVF----------------VKPARSGSSFGVSKV---------- 185
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+ E LLR +E ++ E V+ E+ + +
Sbjct: 186 -SEEAALLR-----------AVESARQYDSQVVIEAAVDGSEVGCAVLGND--------- 224
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI-NLTPPPASIMST 659
+++ G + + H + ++ + G+G N TP + +S
Sbjct: 225 -----LDLLTGEVDRISLSHGF------------FRIHQEIEPGSGSENSTPIVPADISP 267
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
EA ++ + + AL G +R+D F+ D G V++ EVNT PGMT
Sbjct: 268 EARSLVQETAKALYRALGCSGLARVDMFLRED-GSVVLNEVNTFPGMT 314
>gi|358065707|ref|ZP_09152243.1| hypothetical protein HMPREF9473_04306 [Clostridium hathewayi
WAL-18680]
gi|356696193|gb|EHI57816.1| hypothetical protein HMPREF9473_04306 [Clostridium hathewayi
WAL-18680]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 120/288 (41%), Gaps = 67/288 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T + ++ DLG+
Sbjct: 95 VVFPVLHGLYGEDGTVQGLLELAKIPYVGCGVLASAVAMDKLYTKIIVD---DLGIRQAA 151
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVK 541
K+DL V SK++ + + VKP+ G S GV++ E LT
Sbjct: 152 YVAVMKDDLTDMDSV------VSKVESRFPYPVFVKPSNAGSSRGVSKAENREGLTA--- 202
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV--ETDEILFSSQSTNKNADRLMW 599
ALEE + +IL+ E V E + +F T
Sbjct: 203 ALEEAV------------------KHDRKILVEEMIVGHEIECAVFGGGKT--------- 235
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
E++ +G+ + + D + K+ + P +
Sbjct: 236 -------EVSASGVGE------------ILAAADFYDFDAKYFNEESRTVVDPE---LPE 273
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
A ++ +Q I A+ G SR+D FV ++GEV+ E+NT+PG T
Sbjct: 274 GAAERVRQAAMAIFKAIDGYGISRVDFFVK-EDGEVVFNEINTMPGFT 320
>gi|206890747|ref|YP_002249129.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
11347]
gi|226696392|sp|B5YFT1.1|DDL_THEYD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|206742685|gb|ACI21742.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 304
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 123/300 (41%), Gaps = 70/300 (23%)
Query: 414 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-SLAL 472
E IK+ K + A F+ +HGG GE+G +Q +LE G+PYTG GV+AS MDK A+ + L
Sbjct: 46 EKIKIEKIDIA--FLVLHGGWGENGAVQGMLEVMGIPYTGSGVLASALAMDKEASKKIFL 103
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
H G+ V K+D I + C VKPA +G S GV
Sbjct: 104 YH----GIPVPPFKVLNKKDY----ISSAVSLSSFSFPC---VVKPAEEGSSIGVN---I 149
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
++ + A+ E F + +I E F+E
Sbjct: 150 VKNEREFKNAINEAF------QFGKR-------------VIIEKFIEGR----------- 179
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
EI +GV+G + V V+ S E K+ G + PP
Sbjct: 180 --------------EIHIGVLG-----DKALGGVEVRPKKGFYSYEAKYTKGLTEYILPP 220
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ +K K+ +L +G +R+D V+ G ++EVNT+PGMT +++L
Sbjct: 221 E---IDNALYEKLKELGLKAHKSLNCKGGTRVDMIVD-QQGNPYVLEVNTIPGMTETSLL 276
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 43/202 (21%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID--DRVVVELFLEGGSEFTAIVLDVG 98
VVKP GSSIGV + + + ++ K I E RV++E F+EG ++ D
Sbjct: 135 VVKPAEEGSSIGVNI----VKNEREFKNAINEAFQFGKRVIIEKFIEGREIHIGVLGD-- 188
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ G V+VR K ++Y KY Y PP + +
Sbjct: 189 -----------------KALGGVEVRPKKGFYSYEAKY-TKGLTEYILPPEIDNALYEKL 230
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+E + L R+D + G ++N I GM +T
Sbjct: 231 KELGLKAHKSLNCKGGTRVDMIV-----------------DQQGNPYVLEVNTIPGMTET 273
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S L + AS G+ +++ I+
Sbjct: 274 SLLPKIASLAGYDFKGLVKEIL 295
>gi|296332824|ref|ZP_06875284.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305673170|ref|YP_003864842.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296150104|gb|EFG90993.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411414|gb|ADM36533.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
str. W23]
gi|407956153|dbj|BAM49393.1| D-alanyl-alanine synthetase A [Bacillus subtilis BEST7613]
gi|407963424|dbj|BAM56663.1| D-alanyl-alanine synthetase A [Bacillus subtilis BEST7003]
Length = 361
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 123/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL
Sbjct: 88 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLF 143
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A G+ K+D ++P + ++ +L VKPA G S G+++ E+
Sbjct: 144 AQAGLAQAKYAAFLKKDWTRSP-EESCEQVEQELGYPCF-VKPANLGSSVGISKCRNREE 201
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 202 LQ---KA-------------------------------FELAFQYDRKVVVEEGINGR-- 225
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 226 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 268
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ ++ E K + A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 269 ---AHVTDEEYAKISEMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 324
Query: 712 L 712
Sbjct: 325 F 325
>gi|414070720|ref|ZP_11406701.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. Bsw20308]
gi|410806886|gb|EKS12871.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. Bsw20308]
Length = 306
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 129/321 (40%), Gaps = 82/321 (25%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
+G D P S+ W +L + N VFIA+HG GEDGT+Q LE +PYTG V+
Sbjct: 39 SGIDAIAFDPQSRSL--W-ELKELNVERVFIALHGRGGEDGTVQGALEFMNLPYTGSNVL 95
Query: 458 ASKTCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 515
S MDK+ HL L+ V K+ I+D + K +
Sbjct: 96 GSALAMDKIRC----KHLFKSAGLSTAPYAVVDAKKGFDAVAIMD---------EFKKVM 142
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
VKP+ +G S G+A+ A++ LEE L N+F
Sbjct: 143 VKPSHEGSSIGMAQASNAQE-------LEEAL----ANAFK------------------- 172
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESG 632
F SQ + +W+ E TV V+G + P + +
Sbjct: 173 ---------FDSQVLVE-----------QWITGREFTVTVLGD-----EVQPVIEMTTPN 207
Query: 633 DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVD 691
+ K+Q T P S TE L Q I L A + + G+ R+DA + +
Sbjct: 208 GFYDYQAKYQSSTTQYHCPANLSKHDTEHL----QEISLDAFDLVGASGWGRVDAMQD-E 262
Query: 692 NGEVLIIEVNTVPGMTPSTVL 712
G ++EVNTVPGMT +++
Sbjct: 263 QGHFYLLEVNTVPGMTEKSLV 283
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 39/202 (19%)
Query: 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
KV+VKP+ GSSIG+ A L++A + D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQASNA-QELEEALANAFK-FDSQVLVEQWIT-GREFTVTVL--- 193
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G + PV+ + T + ++Y+ KY + YH P +
Sbjct: 194 -GDEVQPVIEMTT--------------PNGFYDYQAKY-QSSTTQYHCPANLSKHDTEHL 237
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+E + F +G + R+D E G ++N + GM +
Sbjct: 238 QEISLDAFDLVGASGWGRVDAM-----------------QDEQGHFYLLEVNTVPGMTEK 280
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A G S ++ I+
Sbjct: 281 SLVPMAAKANGASFEQLVVRIL 302
>gi|383458056|ref|YP_005372045.1| D-alanine--D-alanine ligase [Corallococcus coralloides DSM 2259]
gi|380732533|gb|AFE08535.1| D-alanine--D-alanine ligase [Corallococcus coralloides DSM 2259]
Length = 318
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 126/314 (40%), Gaps = 77/314 (24%)
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ +LP R L E ++A+HG GEDG +Q LLEA +PYTG GVMAS
Sbjct: 54 DVGKDLPAR--------LIAEKVDVAWLALHGRFGEDGCIQGLLEAMFIPYTGSGVMASA 105
Query: 461 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK-TLCVKPA 519
MDKV A G+ T R D + + + +L + VKP+
Sbjct: 106 VGMDKV---YAKEIFVARGIPT---PPYRAFDSAEAALAE-----ADRLPFPFPVVVKPS 154
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R+G S GV E+ T V
Sbjct: 155 REGSSVGVHICKTREEYTAAV--------------------------------------- 175
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
Q +K+A L+ + + E+ GV+ + + + VK + + E
Sbjct: 176 --------QDASKHAGTLLVEQFIKGREVQGGVLD-----NEALGVIEVKAAREFYDYEA 222
Query: 640 KFQGGTGIN-LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G+G L P P + + + + AL G SR D V ++G+V ++
Sbjct: 223 KYKAGSGTQYLFPAP---LPPDLYARVNEVSLGAHKALGCSGGSRSDVIVT-ESGDVFLL 278
Query: 699 EVNTVPGMTPSTVL 712
E+NT+PGMT S++L
Sbjct: 279 EINTLPGMTASSLL 292
>gi|422017274|ref|ZP_16363839.1| D-alanine--D-alanine ligase [Providencia alcalifaciens Dmel2]
gi|414105424|gb|EKT66981.1| D-alanine--D-alanine ligase [Providencia alcalifaciens Dmel2]
Length = 306
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 130/317 (41%), Gaps = 73/317 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDGT+Q +LE G+PYTG GVMAS MDK+ T L A L V
Sbjct: 58 AFIALHGRGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTK-QLWQGAGLSVSPYIS 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R+K +K +L +++ L VKP+ +G S G++++ + AL
Sbjct: 117 LNRQKYTNIKK------EQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDS-------LDAL 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E IE+ + L+ E
Sbjct: 164 PEA---------------IELAFQFDDTLLIE---------------------------- 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+W+ E TV V+G ++PS+ ++ G E K+ P S ++ +
Sbjct: 181 KWLSGPEYTVAVLG-----DEVLPSIRIQPPGIFYDYEAKYLSDETQYFCP---SGLTND 232
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
K A+ G+ R+D + D GE ++EVNT PGMT +++ A Q
Sbjct: 233 LEAKLADMAMKAYQAVGCRGWGRVDVMQDSD-GEFYLLEVNTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDLGS 737
M Q ++L+L S
Sbjct: 290 AGMDFSQLVVRILELAS 306
>gi|123441034|ref|YP_001005023.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087995|emb|CAL10783.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 306
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 123/300 (41%), Gaps = 69/300 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ + +T + +KL L VKP+ +G S G++++ A L
Sbjct: 109 ----LPISPYIALNRQQFETLSSEELAACVAKLGLP-LIVKPSHEGSSVGMSKVDQANQL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ E F ++L
Sbjct: 164 ---------------------------------HSALVEAFRHDTDVLI----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G + ++PS+ ++ G E K+ P
Sbjct: 180 ------EKWLSGPEFTVAILG-----NDVLPSIRIQAPGVFYDYEAKYLSDETQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E L++ + L A AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSAE-LEQQLAALSLQAYQALGCSGWGRVDVMQDSD-GRFYLLEVNTSPGMTSHSLV 283
>gi|90410346|ref|ZP_01218362.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
3TCK]
gi|90328587|gb|EAS44871.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
3TCK]
Length = 304
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 125/290 (43%), Gaps = 72/290 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 483
VFIA+HGGIGE G +Q+LL+ +PYTG G +AS ++K+ + N L +T+
Sbjct: 56 VFIALHGGIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTL 115
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+K P+ DI +L S + C + VKP GCS GV+++ DL L
Sbjct: 116 HK---------HAPMDDIKAQLLSVV-CPVV-VKPISQGCSIGVSKVDNNADL------L 158
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E + F D+IL S +
Sbjct: 159 EA---------------------------VITAFEYDDDILIESFIAGR----------- 180
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E T V+ +P V ++ S + KF G+ P+ + S + D
Sbjct: 181 ---EYTCAVLNG-----EALPIVQIR-SEQFFDYDAKF--GSQSATYHCPSDLTSEQERD 229
Query: 664 KCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
Q + L A NAL G+ R+D ++ ++G+V +IE+NT+PGMT +V
Sbjct: 230 --MQVLALNAYNALGCRGWGRVDTILD-ESGDVFLIEMNTIPGMTTRSVF 276
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 79/204 (38%), Gaps = 40/204 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVVKP G SIGV+ D L+ I DD +++E F+ G E+T VL+ G
Sbjct: 135 VVVKPISQGCSIGVSKVDNNADLLEAV--ITAFEYDDDILIESFI-AGREYTCAVLN-GE 190
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
P+V + +E QF F+Y K+ +Q YH P ++
Sbjct: 191 AL---PIVQIRSE---QF------------FDYDAKF-GSQSATYHCPSDLTSEQERDMQ 231
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A + LG + R+D E G + ++N I GM S
Sbjct: 232 VLALNAYNALGCRGWGRVDTIL-----------------DESGDVFLIEMNTIPGMTTRS 274
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
A + G S ++ +++ A
Sbjct: 275 VFPMAAKEAGLSFEQVISSLLDSA 298
>gi|386813901|ref|ZP_10101125.1| D-alanine/D-alanine ligase [planctomycete KSU-1]
gi|386403398|dbj|GAB64006.1| D-alanine/D-alanine ligase [planctomycete KSU-1]
Length = 333
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 130/301 (43%), Gaps = 78/301 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDG +Q LLE++G+PYTG G+ ASK MDK+AT +
Sbjct: 60 FIALHGCFGEDGGVQQLLESKGIPYTGSGINASKLAMDKLATKKCFIEMG---------- 109
Query: 487 VRRKEDLLKTP----------IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
LKTP + +I HE+ K + +KP R+G S G++ + +L
Sbjct: 110 -------LKTPDYIAITEFQEMTEIEHEI--KKFGLPVILKPTRNGSSIGISIVRDGNNL 160
Query: 537 TVYV-KALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+ + KA E C L I R + + + I+ +P +E F+ + K+
Sbjct: 161 RINLEKAFEFGCELLIERYIEGREFTVGILDDKALPIIEIKPAME----FFNYDAKYKD- 215
Query: 595 DRLMWKGNSRW--VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
G +++ VEIT E DI G NL
Sbjct: 216 ------GRTQYLIVEIT-------------------SEGKDI-------AGDAPYNLGYL 243
Query: 653 PASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
P+ + + Q + L A+ L +GFSR+D ++ + ++EVNT+PG T ++
Sbjct: 244 PSFLYNR------AQELALNAHRVLGCKGFSRVDILMDTE-ANFYLLEVNTIPGFTEKSL 296
Query: 712 L 712
L
Sbjct: 297 L 297
>gi|309783023|ref|ZP_07677742.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
5_7_47FAA]
gi|404397167|ref|ZP_10988960.1| D-alanine-D-alanine ligase [Ralstonia sp. 5_2_56FAA]
gi|308918131|gb|EFP63809.1| D-alanine--D-alanine ligase (D-alanylalanine
synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
5_7_47FAA]
gi|348610646|gb|EGY60332.1| D-alanine-D-alanine ligase [Ralstonia sp. 5_2_56FAA]
Length = 331
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 117/308 (37%), Gaps = 71/308 (23%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + LAK+ V I++HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 51 DAHPFDPGLQPVADLAKQGFDRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAM 110
Query: 464 DKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK AT D +L D + D L P++ VKPA
Sbjct: 111 DKEATKRQWQTHGLPTPDFVMLHAGADWQAVADRLGLPLI----------------VKPA 154
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R+G S G+ ++ +L P ++ +A + ++ E F+E
Sbjct: 155 REGSSIGLTKVTSVAEL---------------PAAYEKAARL-------DRDVMAEQFIE 192
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D E+T +IG+ G + +P + + +
Sbjct: 193 GD-------------------------ELTCPIIGE-GESATALPLIRIVAPQANYDYQN 226
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 699
K+ P P ++ + + + + L G+ R D + + ++E
Sbjct: 227 KYFTDDTRYECPAP---IAADVAARVQALVVQAYRGLGCRGWGRADIMLRKSDNAPFLLE 283
Query: 700 VNTVPGMT 707
+NT PGMT
Sbjct: 284 MNTSPGMT 291
>gi|386740252|ref|YP_006213432.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
31]
gi|392400457|ref|YP_006437057.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
Cp162]
gi|384476946|gb|AFH90742.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
31]
gi|390531535|gb|AFM07264.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
Cp162]
Length = 360
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 126/311 (40%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 108 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 163
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V + D + E ++ + VKPAR G S G++R+ ED +
Sbjct: 164 EVILRGD-------ETLTESDKQMLGLPVFVKPARGGSSIGISRVIEWEDFDAAL----- 211
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +R H +++ + +
Sbjct: 212 --------TLAREHDT----------------------------------KVIVEAEIKG 229
Query: 606 VEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQG------GTGINLTPPPASIMS 658
VE+ GV+ + GS+ + +P+ + D+ EE F G + T P
Sbjct: 230 VEVECGVLERADGSLIASVPA----QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQ 285
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
T AL Q + L A AL G SR+D FV D G VL EVNT+PG TP +
Sbjct: 286 TIAL---IQSLSLEAFQALNCRGLSRVDFFVT-DQGPVL-NEVNTMPGFTPIS------- 333
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 334 -----MYPQVF 339
>gi|330465894|ref|YP_004403637.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
gi|328808865|gb|AEB43037.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
Length = 388
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 115/282 (40%), Gaps = 59/282 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG +Q LLE+ GVPY G G++AS MDKVA AL + I
Sbjct: 124 VFPVLHGPYGEDGVVQGLLESLGVPYVGCGILASAVGMDKVAMKRALRAEG----VPITP 179
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V E +T + +L L+ + L VKPAR G S G++R+ +DL A+EE
Sbjct: 180 HVWFDEHTYRT--TEDVEKLVVGLR-RPLFVKPARMGSSIGISRVTEDDDLAA---AVEE 233
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L D ++ Q
Sbjct: 234 AL-------------------------------RHDNLVVVEQGVTGR------------ 250
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E+ GV+G S + V V +G ++K+ G + P +++ E ++
Sbjct: 251 -ELECGVLGGTRPEASTVGEVRV--TGGWFDYQQKYFGDADPMVVP---AVLPDEVTERI 304
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ A+ G +R+D + GE+ + E+NT+PG T
Sbjct: 305 RDLSLRAFAAIGGWGLARVDFLYDESAGELYVNELNTMPGFT 346
>gi|241664305|ref|YP_002982665.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12D]
gi|240866332|gb|ACS63993.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12D]
Length = 331
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 117/308 (37%), Gaps = 71/308 (23%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + LAK+ V I++HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 51 DAHPFDPGLQPVADLAKQGFDRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAM 110
Query: 464 DKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK AT D +L D + D L P++ VKPA
Sbjct: 111 DKEATKRQWQTHGLPTPDFVMLHAGADWQAVADRLGLPLI----------------VKPA 154
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
R+G S G+ ++ +L P ++ +A + ++ E F+E
Sbjct: 155 REGSSIGLTKVTSVAEL---------------PAAYEKAARL-------DRDVMAEQFIE 192
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D E+T +IG+ G + +P + + +
Sbjct: 193 GD-------------------------ELTCPIIGE-GESATALPLIRIVAPQANYDYQN 226
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 699
K+ P P ++ + + + + L G+ R D + + ++E
Sbjct: 227 KYFTDDTRYECPAP---IAVDVAARVQALVVQAYRGLGCRGWGRADIMLRKSDNAPFLLE 283
Query: 700 VNTVPGMT 707
+NT PGMT
Sbjct: 284 MNTSPGMT 291
>gi|308048070|ref|YP_003911636.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
gi|307630260|gb|ADN74562.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
Length = 306
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 116/294 (39%), Gaps = 70/294 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FI +HG GEDGT+Q LE +PYTG V+ MDKV T A LG+ T +
Sbjct: 61 AFIVLHGRGGEDGTVQGALELMKIPYTGSRVLGCAVAMDKVRTKWL---WAGLGLPTADF 117
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V KE DI L S + VKPA +G S G+A+ AED KA++
Sbjct: 118 EVVDKESFSPNSAEDIMARLGSPVM-----VKPACEGSSIGMAK---AEDAASLQKAIDT 169
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L D +L + W
Sbjct: 170 ALQY------------------------------DDTVLVEA-----------------W 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
V E TV ++G+ +P++ ++ E K+Q T P S +AL
Sbjct: 183 VHGPEFTVSILGE-----EALPAIRMETPNVFYDYEAKYQSQTTQYHCPAGLSDDDEQAL 237
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
R A+ G+ R+D + D G ++EVNTVPGMT ++++ A
Sbjct: 238 RALALR---AFKAVGASGWGRVDVMRDAD-GSWRLLEVNTVPGMTETSLVPKAA 287
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V+VKP GSSIG+ A SL+KA L+ DD V+VE ++ G EFT +L
Sbjct: 141 VMVKPACEGSSIGMAKAEDAA-SLQKAIDTALQ-YDDTVLVEAWVHG-PEFTVSIL---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P + + T + ++Y KY +Q YH P ++R
Sbjct: 194 GEEALPAIRMET--------------PNVFYDYEAKY-QSQTTQYHCPAGLSDDDEQALR 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A F+ +G + R+D V ++ G+ ++N + GM +TS
Sbjct: 239 ALALRAFKAVGASGWGRVD---------VMRDAD--------GSWRLLEVNTVPGMTETS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ + A+ VG ++ I+
Sbjct: 282 LVPKAANAVGVDFDTLVARIL 302
>gi|443633953|ref|ZP_21118129.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443346149|gb|ELS60210.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 361
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 121/300 (40%), Gaps = 70/300 (23%)
Query: 420 KENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-A 476
++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL A
Sbjct: 89 EQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLFA 144
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
G+ K+D ++P + ++ +L VKPA G S G+++ E+L
Sbjct: 145 QAGLAQAKYAAFLKKDWTRSP-EESCKQVEEELGYPCF-VKPANLGSSVGISKCRNREEL 202
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KA FE + D + + N
Sbjct: 203 Q---KA-------------------------------FELAFQYDRKVVVEEGINGR--- 225
Query: 597 LMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
EI +GV+G KC + + P D + K++ G + P
Sbjct: 226 ----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP- 268
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ +S E K A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 269 --ANVSDEEYTKISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSMF 325
>gi|390443029|ref|ZP_10230828.1| D-alanyl-alanine synthetase A [Nitritalea halalkaliphila LW7]
gi|389667337|gb|EIM78760.1| D-alanyl-alanine synthetase A [Nitritalea halalkaliphila LW7]
Length = 327
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 114/291 (39%), Gaps = 62/291 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG L E +PYT V+ S M+K T +
Sbjct: 77 VFNCLHGSPGEDGKLAGYFELIDMPYTTCDVLTSAITMNKAFTKAIVE------------ 124
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
PI +++ + +LQ G + AR+ L V+VK
Sbjct: 125 -----------PIPELYVAKSVRLQ----------RGDAQAAARVLAELRLPVFVK---- 159
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIF-EPFVETDEILFSSQSTNKNADRLMWKGNSR 604
PNS + GM ++ F E E+L + +
Sbjct: 160 ------PNSGGSSIGMSKVKEEAALEEALLRAFQEDSEVLVEEFVSGR------------ 201
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E ++G+ G +H ++P+ + S + E K+ G +TP MSTE + +
Sbjct: 202 --EFSIGMYKAKGQVH-VLPATEIVSSKEFFDFEAKYVAGVTEEITP---GRMSTEEVAR 255
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
K+ + AL G R+D F+ ++G+ IE+NTVPG T ++++ Q
Sbjct: 256 VKRIAAAVYEALGCRGAVRMDYFLRHEDGKCFFIELNTVPGQTETSLISQQ 306
>gi|321314130|ref|YP_004206417.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
gi|384174128|ref|YP_005555513.1| D-alanine--D-alanine ligase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277908|ref|YP_005559643.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto
BEST195]
gi|291482865|dbj|BAI83940.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto
BEST195]
gi|320020404|gb|ADV95390.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
gi|349593352|gb|AEP89539.1| D-alanine--D-alanine ligase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 361
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 122/301 (40%), Gaps = 70/301 (23%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+++N+A VF +HG GEDGT+Q +LE +PY G GV+AS MDKV + HL
Sbjct: 88 SQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVLASSAGMDKV----VMKHLF 143
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A G+ K+D ++P + ++ +L VKPA G S G+++ E+
Sbjct: 144 AQAGLAQAKYAAFLKKDWTRSP-KESCEQVEQELGYPCF-VKPANLGSSVGISKCRNREE 201
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA FE + D + + N
Sbjct: 202 LQ---KA-------------------------------FELAFQYDRKVVVEEGINGR-- 225
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
EI +GV+G KC + + P D + K++ G + P
Sbjct: 226 -----------EIEIGVLGNDDPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLMIP 268
Query: 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+I++ E A+ G R D F+ D GEVLI EVNT+PG TP ++
Sbjct: 269 ---AIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFTPFSM 324
Query: 712 L 712
Sbjct: 325 F 325
>gi|420257215|ref|ZP_14759981.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404515360|gb|EKA29129.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 306
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 123/300 (41%), Gaps = 69/300 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ + +T + +KL L VKP+ +G S G++++ A L
Sbjct: 109 ----LPISPYIALNRQQFETLSSEELAACVAKLGLP-LIVKPSHEGSSVGMSKVDQANQL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ E F ++L
Sbjct: 164 ---------------------------------HSALVEAFRHDTDVLI----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G + ++PS+ ++ G E K+ P
Sbjct: 180 ------EKWLSGPEFTVAILG-----NDVLPSIRIQAPGVFYDYEAKYLSDETQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E L++ + L A AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSAE-LEQQLAALSLQAYQALGCSGWGRVDVMQDSD-GRFYLLEVNTSPGMTSHSLV 283
>gi|379715203|ref|YP_005303540.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
316]
gi|377653909|gb|AFB72258.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
316]
Length = 361
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 126/313 (40%), Gaps = 90/313 (28%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 108 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 163
Query: 486 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+V R E L ++ L+ VKPAR G S G++R+ ED +
Sbjct: 164 EVILRGDETLTESD--------KQMLRSSPAFVKPARGGSSIGISRVIEWEDFDAAL--- 212
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ +R H +++ +
Sbjct: 213 ----------TLAREHDT----------------------------------KVIVEAEI 228
Query: 604 RWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQG------GTGINLTPPPASI 656
+ VE+ GV+ + GS+ + +P+ + D+ EE F G + T P
Sbjct: 229 KGVEVECGVLERADGSLIASVPA----QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFD 284
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
T AL Q + L A AL G SR+D FV D G VL EVNT+PG TP +
Sbjct: 285 QQTIAL---IQSLSLEAFQALNCRGLSRVDFFVT-DQGPVL-NEVNTMPGFTPIS----- 334
Query: 716 ALSEQPPMYPHQF 728
MYP F
Sbjct: 335 -------MYPQVF 340
>gi|34499796|ref|NP_904011.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
gi|39930963|sp|Q7NQ01.1|DDLB_CHRVO RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|34105646|gb|AAQ62000.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
Length = 303
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 120/307 (39%), Gaps = 78/307 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--- 474
L +E VF +HG GEDGTLQ LEA G+PYTG GVMAS MDK T L
Sbjct: 52 LKEEGFDCVFNILHGPFGEDGTLQGALEALGMPYTGCGVMASAIAMDKWRTKLLWKGAGL 111
Query: 475 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
+ +L N D E L PI VKP+ +G S GV ++
Sbjct: 112 PIPAFELLDENSDFDAIERQLGLPIF----------------VKPSTEGSSIGVTKV--- 152
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI-LIFEPFVETDEILFSSQSTNK 592
P E+ FE + D+++ + Q
Sbjct: 153 --------------------------------KQPGELRAAFEEARKYDKVVIAEQFIGG 180
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
E T VIG+ + P++ ++ + + + K+ + P
Sbjct: 181 G-------------EYTCAVIGE-----TAYPTIKIEPATEYYDYQAKYFRDDTVYRCP- 221
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S ++ E + ++ L G+SR+D F+ + GE+ ++E NT PGMT +++
Sbjct: 222 --SGLAPEVEARARELALKAFKVLGCRGWSRVD-FLMDEAGEIYLLEANTSPGMTSHSLV 278
Query: 713 IHQALSE 719
A +E
Sbjct: 279 PMAARAE 285
>gi|430809418|ref|ZP_19436533.1| D-alanine--D-alanine ligase [Cupriavidus sp. HMR-1]
gi|429498105|gb|EKZ96620.1| D-alanine--D-alanine ligase [Cupriavidus sp. HMR-1]
Length = 327
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + +LA VFIA+HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 48 DAHPFDPGLQPISELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVLASALAM 107
Query: 464 DKVATS-LALNH---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK AT L + H +L N D L P++ VKPA
Sbjct: 108 DKQATKRLWMTHGLTTPRFAMLYANTDFDAVVADLGLPLI----------------VKPA 151
Query: 520 RDGCSTGVARLCCAEDL 536
R+G S G+ ++ A+ +
Sbjct: 152 REGSSIGLTKVVAADQM 168
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 41/207 (19%)
Query: 40 VVVKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
++VKP R GSSIG+T A + + +KA G+D V+ E F++ G+E T ++
Sbjct: 146 LIVKPAREGSSIGLTKVVAADQMRAAFEKAA-----GLDADVIAETFID-GAELTCPIVG 199
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G + PV + + ++ ++Y+ KY T Y P P +
Sbjct: 200 EGPTAEALPV--------------IKIVAPESNYDYQNKYF-TDDTQYLCPSTLPDALER 244
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A F+ LG +AR D T G ++N GM
Sbjct: 245 EVRALAVEAFRVLGCRGWARADVML-----------------TRDGKPYLLEMNTSPGMT 287
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHA 243
S + A G S+ + + ++ A
Sbjct: 288 GHSLVPMAARAQGISYEDFVMQVLAAA 314
>gi|421781644|ref|ZP_16218109.1| D-alanine--D-alanine ligase 2 [Serratia plymuthica A30]
gi|407756210|gb|EKF66328.1| D-alanine--D-alanine ligase 2 [Serratia plymuthica A30]
Length = 306
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 132/341 (38%), Gaps = 107/341 (31%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK----------- 465
+L + VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK
Sbjct: 49 QLKEHGFTKVFIALHGRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMG 108
Query: 466 --VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 523
VA +ALN L G N R + L P++ VKP+R+G
Sbjct: 109 LPVAPYVALNRLQYAGAEKQNLIARVEA--LGLPLI----------------VKPSREGS 150
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S G++++ + L ALEE F D++
Sbjct: 151 SVGMSKVTERDALEA---ALEEG------------------------------FRHDDDV 177
Query: 584 LFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
L +W+ E TV ++G ++PS+ ++ +G + K
Sbjct: 178 LV-----------------EKWLSGPEYTVAMLGD-----QVLPSIRIQPAGVFYDYQAK 215
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGE 694
+ P +Q E+ A AL+ G+ R+D + D G
Sbjct: 216 YISDDTQYFCPSGLG---------AEQEAEMAALALRAYRGLDCSGWGRVDVMQDSD-GS 265
Query: 695 VLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
++EVNT PGMT +++ A Q + Q ++L+L
Sbjct: 266 FYLLEVNTSPGMTSHSLVPMAA--RQSGLSFSQLVARILEL 304
>gi|398876001|ref|ZP_10631161.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM67]
gi|398205293|gb|EJM92077.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM67]
Length = 364
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 180/471 (38%), Gaps = 136/471 (28%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 337
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFDPVLI--------GIDKQGHWHLNDP 54
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
S+ + P + L + E+ A+ P + R Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKT------RQQLVETSSQELLGH--- 98
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 508
S CMDK I+K + R L TP V + + E+ K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRATAKRTGFAEVRGK 177
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
L L VKPA G S GV+++ D Y A+E L G E
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKV---NDEAEYTAAVELAL------------GFDE----- 216
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 628
++L S + + EI V+G ++ S + V
Sbjct: 217 -------------KVLVESAVSGR--------------EIECAVLGNEDAIASGCGEIVV 249
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
+ S + K+ + P + +STEA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDAQAAQVVVP--ADISTEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 306 T-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVSRLIELALEK 353
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 45/204 (22%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLD---- 96
VKP GSS+GV+ V D + + L G D++V+VE + G E VL
Sbjct: 184 VKPANQGSSVGVS---KVNDEAEYTAAVELALGFDEKVLVESAVSG-REIECAVLGNEDA 239
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ SG C +V+ + ++Y KY+ Q P
Sbjct: 240 IASG--CGEIVV-----------------RSGFYSYDSKYIDAQAAQVVVPADISTEASE 280
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
IR A FQ LG AR+D + T+ G +L +IN + G
Sbjct: 281 RIRALAVEAFQVLGCSGLARVDVFL-----------------TDSGEVLINEINSLPGFT 323
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
+ S + G ++S ++ +I
Sbjct: 324 RISMYPKLWQATGMTYSELVSRLI 347
>gi|154684959|ref|YP_001420120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens FZB42]
gi|190359113|sp|A7Z1L3.1|DDL_BACA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|154350810|gb|ABS72889.1| Ddl [Bacillus amyloliquefaciens FZB42]
Length = 354
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q LLE VPY G GV+AS MDKV + HL A G+
Sbjct: 90 VFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKV----IMKHLFAQAGLPQAK 145
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K+D +TP D + K VKPA G S G+++ E+L KA
Sbjct: 146 YAAFLKKDWKQTP--DSCLQQVEKELGYPCFVKPANLGSSVGISKCRNREELE---KA-- 198
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
FE E D + + A R
Sbjct: 199 -----------------------------FELAFEYDRKIVVEEGI---AGR-------- 218
Query: 605 WVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI +GV+G KC ++ + P D + K++ G + PA + +
Sbjct: 219 --EIEIGVLGNDEPKCSAVGEIAPKT------DFYDYKAKYEDGDTDLMI--PAQVTDEQ 268
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + I+ A+ G R D F+ D G+VLI EVNT+PG TP ++
Sbjct: 269 YAEISEMAIKAF-KAIDGSGLVRADFFLTND-GQVLINEVNTMPGFTPFSMF 318
>gi|387138516|ref|YP_005694495.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|349734994|gb|AEQ06472.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
CIP 52.97]
Length = 360
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 126/311 (40%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 108 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 163
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V + D + E ++ + VKPAR G S G++R+ ED +
Sbjct: 164 EVILRGD-------ETLTESDKQILGLPVFVKPARGGSSIGISRVIEWEDFDAAL----- 211
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +R H +++ + +
Sbjct: 212 --------TLAREHDT----------------------------------KVIVEAEIKG 229
Query: 606 VEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQG------GTGINLTPPPASIMS 658
VE+ GV+ + GS+ + +P+ + D+ EE F G + T P
Sbjct: 230 VEVECGVLERADGSLIASVPA----QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQ 285
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
T AL Q + L A AL G SR+D FV D G VL EVNT+PG TP +
Sbjct: 286 TIAL---IQSLSLEAFQALNCRGLSRVDFFVT-DQGPVL-NEVNTMPGFTPIS------- 333
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 334 -----MYPQVF 339
>gi|395448025|ref|YP_006388278.1| D-alanine--D-alanine ligase [Pseudomonas putida ND6]
gi|388562022|gb|AFK71163.1| D-alanine--D-alanine ligase [Pseudomonas putida ND6]
Length = 202
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
I+ E+ E + L VF+A+HGG GE+G Q+ LE G+PY GP AS
Sbjct: 33 LQISHEIFTISDYRELLSLDLAKFTRVFLALHGGFGENGMAQAYLEGLGIPYNGPSPQAS 92
Query: 460 KTCMDKVATSLALNHLA-DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
CMDK+ T H+A LG+ N + D D+ E S+ VKP
Sbjct: 93 AICMDKLLT----KHIARGLGINVANYLYSKNGD-------DVCFEEISERLGTPCIVKP 141
Query: 519 ARDGCSTGVA 528
R+GCS GV+
Sbjct: 142 NREGCSFGVS 151
>gi|387140516|ref|YP_005696494.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392307|gb|AER68972.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
1/06-A]
Length = 363
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 126/311 (40%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 111 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 166
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V + D + E ++ + VKPAR G S G++R+ ED +
Sbjct: 167 EVILRGD-------ETLTESDKQMLGLPVFVKPARGGSSIGISRVIEWEDFDAAL----- 214
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +R H +++ + +
Sbjct: 215 --------TLAREHDT----------------------------------KVIVEAEIKG 232
Query: 606 VEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQG------GTGINLTPPPASIMS 658
VE+ GV+ + GS+ + +P+ + D+ EE F G + T P
Sbjct: 233 VEVECGVLERADGSLIASVPA----QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQ 288
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
T AL Q + L A AL G SR+D FV D G VL EVNT+PG TP +
Sbjct: 289 TIAL---IQSLSLEAFQALNCRGLSRVDFFVT-DQGPVL-NEVNTMPGFTPIS------- 336
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 337 -----MYPQVF 342
>gi|157147484|ref|YP_001454803.1| D-alanine--D-alanine ligase [Citrobacter koseri ATCC BAA-895]
gi|157084689|gb|ABV14367.1| hypothetical protein CKO_03283 [Citrobacter koseri ATCC BAA-895]
Length = 306
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 131/314 (41%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +L+ G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLDLIGLPYTGSGVMASAISMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L L VKP+R+G S G++ K +EE
Sbjct: 117 LTRAE---FEKGLSDDALTRISALGLP-LIVKPSREGSSVGMS------------KVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ F +E+L +W
Sbjct: 161 NALQAALALA---------------------FQHDEEVLIE-----------------KW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P E
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLE----EEQ 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A AL +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EAILQTLVLKAWTALGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
>gi|397169235|ref|ZP_10492670.1| D-alanine--D-alanine ligase [Alishewanella aestuarii B11]
gi|396089315|gb|EJI86890.1| D-alanine--D-alanine ligase [Alishewanella aestuarii B11]
Length = 303
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 122/299 (40%), Gaps = 75/299 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
LA + VFI +HG GEDGT+Q L+ G+PYTG GV+ S MDK+
Sbjct: 49 LASLSADKVFIVLHGRGGEDGTMQGALQQLGLPYTGSGVLGSALAMDKIRCKWLFQA--- 105
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
G+ T V R D T + +L K + VKPA +G S G++ A +L
Sbjct: 106 QGLPTAPFLVVRPGD---TDYAAMLQQLGGK-----VMVKPANEGSSIGMSAASNAAELA 157
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
+ + AH + E+L+
Sbjct: 158 ---------------TAIATAHQYDQ------EVLV------------------------ 172
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
RW+ E T+ ++ ++P V ++ E K+Q + L P P
Sbjct: 173 -----ERWIDGREFTIAILN-----DQVLPIVEMRTPRAFYDYEAKYQANSTEYLCPAPL 222
Query: 655 SIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ T A+ Q+ L A A+ G+ R+D ++ +G+ ++EVNTVPGMT +++
Sbjct: 223 TAELTAAM----QQSALAAFKAVGASGWGRVDLMLD-QSGQHYLLEVNTVPGMTEKSLV 276
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 96/242 (39%), Gaps = 47/242 (19%)
Query: 4 QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSL 63
QG T P +++ + + + + L GKV+VKP GSSIG++ A + L
Sbjct: 106 QGLPTAPFLVVRPGDTDYAAM--------LQQLGGKVMVKPANEGSSIGMSAASNAAE-L 156
Query: 64 KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV 123
A + D V+VE +++G EFT +L+ +LP V++
Sbjct: 157 ATAIATAHQ-YDQEVLVERWIDG-REFTIAILND---------QVLPI---------VEM 196
Query: 124 REKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 183
R A ++Y KY Y P + ++++ A F+ +G + R+D
Sbjct: 197 RTPRAFYDYEAKY-QANSTEYLCPAPLTAELTAAMQQSALAAFKAVGASGWGRVDLMLDQ 255
Query: 184 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 243
S H ++N + GM + S + A G+S ++ I+ A
Sbjct: 256 SGQH-----------------YLLEVNTVPGMTEKSLVPMAAKAAGYSFQQLVLAILQQA 298
Query: 244 CS 245
S
Sbjct: 299 DS 300
>gi|452876890|ref|ZP_21954222.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa VRFPA01]
gi|452186303|gb|EME13321.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa VRFPA01]
Length = 319
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGDDLLHR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLGSEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|452911409|ref|ZP_21960077.1| D-alanine--D-alanine ligase [Kocuria palustris PEL]
gi|452833337|gb|EME36150.1| D-alanine--D-alanine ligase [Kocuria palustris PEL]
Length = 390
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 118/294 (40%), Gaps = 62/294 (21%)
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DL 478
+E+ V +HG GEDGTLQ +LE + Y G GV +S MDK +A ++
Sbjct: 118 REHIDVVLPLLHGPYGEDGTLQGMLELADMRYVGCGVTSSAVGMDKHFMKVAFESAGLEV 177
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
G + KD R + + ++D +L + + VKPAR G S G+ R+ D +
Sbjct: 178 GPYIVAKDRRWRSE--PEAVLDEIAQLAAP-----VFVKPARAGSSFGITRVDDPSDRSA 230
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNADRL 597
A+EE SF R ++ E + EI + Q ++A R+
Sbjct: 231 VTAAVEEA------RSFDRK-------------VVVEAGISGREIECAVLQGHGQDAPRV 271
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
SL+ + V + E K+ L+ P
Sbjct: 272 -----------------------SLLGEIVVVDEHSFYDFEAKYVAQDSAQLSCP----- 303
Query: 658 STEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
E + +RI A A+ EG SR D F+ D+G LI EVNT+PG T
Sbjct: 304 -AEVPEATAERIRADAARAFEAVDGEGLSRADFFLT-DDGRALINEVNTMPGFT 355
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 39/198 (19%)
Query: 29 VTNKLDPNSGKVVVKPTRAGSSIGVTVA------YGVIDSLKKAKGIILEGIDDRVVVEL 82
V +++ + V VKP RAGSS G+T V ++++A+ D +VVVE
Sbjct: 195 VLDEIAQLAAPVFVKPARAGSSFGITRVDDPSDRSAVTAAVEEAR-----SFDRKVVVEA 249
Query: 83 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 142
+ G E VL G G D V LL G + V ++ + +++ KY+
Sbjct: 250 GIS-GREIECAVLQ-GHGQDAPRVSLL---------GEIVVVDEHSFYDFEAKYVAQDSA 298
Query: 143 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 202
P P IR A+ F+ + +R D +FL T+ G
Sbjct: 299 QLSCPAEVPEATAERIRADAARAFEAVDGEGLSRAD-FFL----------------TDDG 341
Query: 203 TILFTDINLISGMEQTSF 220
L ++N + G S
Sbjct: 342 RALINEVNTMPGFTSISM 359
>gi|389850261|ref|YP_006352496.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
258]
gi|388247567|gb|AFK16558.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
258]
Length = 363
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 126/311 (40%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 111 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 166
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V + D + E ++ + VKPAR G S G++R+ ED +
Sbjct: 167 EVILRGD-------ETLTESDKQILGLPVFVKPARGGSSIGISRVIEWEDFDAAL----- 214
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +R H +++ + +
Sbjct: 215 --------TLAREHDT----------------------------------KVIVEAEIKG 232
Query: 606 VEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQG------GTGINLTPPPASIMS 658
VE+ GV+ + GS+ + +P+ + D+ EE F G + T P
Sbjct: 233 VEVECGVLERADGSLIASVPA----QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQ 288
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
T AL Q + L A AL G SR+D FV D G VL EVNT+PG TP +
Sbjct: 289 TIAL---IQSLSLEAFQALNCRGLSRVDFFVT-DQGPVL-NEVNTMPGFTPIS------- 336
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 337 -----MYPQVF 342
>gi|163839625|ref|YP_001624030.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
gi|162953101|gb|ABY22616.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
Length = 365
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 116/282 (41%), Gaps = 56/282 (19%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 489
VHG GEDG LQ LE GV Y G GV++S +DK T L + + + D
Sbjct: 104 VHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVRTAPGLTIDATL 163
Query: 490 KEDLLKTPIVDIWHEL--TSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECL 547
++ L +TP D L ++K++ VKP R G S G++++ +L VK
Sbjct: 164 RDQLAETP--DQAENLLKSAKIELPVF-VKPLRGGSSFGISKVTEQLNLADAVKL----- 215
Query: 548 LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVE 607
AHG +E ++LI EP V R E
Sbjct: 216 ---------AAHGPVEQ-----DVLI-EPEV-------------------------RGKE 235
Query: 608 ITVGVIG--KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
+ VGV+ C + V + S E K+ L P P + EA
Sbjct: 236 VDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYSSTETRFLVPAP---IGDEASAAI 292
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + + + AL G +R+D FV+ D+G + E+NT+PG T
Sbjct: 293 RAQAKAVFTALGCRGLARVDFFVD-DDGTATLNEINTLPGFT 333
>gi|71275120|ref|ZP_00651407.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
gi|170731109|ref|YP_001776542.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
gi|71163929|gb|EAO13644.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
gi|167965902|gb|ACA12912.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
Length = 320
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 123/304 (40%), Gaps = 84/304 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS---LALN----HLA 476
VF +HG G GEDG +Q L++A GVPYTG V+AS MDKV T LAL A
Sbjct: 74 VFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLASALSMDKVRTKQVWLALGLPTPRYA 133
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L V +VR+ ++L P++ +KPA++G S GV+R+ E
Sbjct: 134 SLSVCATAVEVRKAVEMLGFPVI----------------IKPAKEGSSVGVSRVFALEH- 176
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE + +R G L+ E +E D
Sbjct: 177 ------LEEAVALA-----ARYEGE----------LLMEQLIEGD--------------- 200
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TV ++ + +PS+ + G K+ + P +
Sbjct: 201 ----------ELTVSILDEMA-----LPSIRIVPQGQWYDYNAKYLAEDTQYVCPGLDDV 245
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
E ++ L A + + G+ R+D +G ++EVNT PGMT + L+ +
Sbjct: 246 AEAEI-----AQLALAAFHGVGCRGWGRVDVMRERSSGRFFLLEVNTAPGMTTHS-LVPK 299
Query: 716 ALSE 719
A S+
Sbjct: 300 AASQ 303
>gi|440738880|ref|ZP_20918402.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens BRIP34879]
gi|447915299|ref|YP_007395867.1| D-alanine--D-alanine ligase [Pseudomonas poae RE*1-1-14]
gi|440380252|gb|ELQ16819.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens BRIP34879]
gi|445199162|gb|AGE24371.1| D-alanine--D-alanine ligase [Pseudomonas poae RE*1-1-14]
Length = 318
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+ R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GIDVGDDFLAR--------LQAEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S MDK+ T + LG+ T V R ED + +K L VKP
Sbjct: 106 SALAMDKLRTKQVWH---SLGIPTPRHSVLRSEDDCIS---------AAKELGLPLIVKP 153
Query: 519 ARDGCSTGVARLCCAEDLTVYVKA 542
A +G S G+A++ A +L KA
Sbjct: 154 AHEGSSIGMAKVNSAAELIDAWKA 177
>gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34]
gi|190359208|sp|Q1LIM8.1|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34]
Length = 327
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 67/137 (48%), Gaps = 20/137 (14%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + +LA VFIA+HG GEDGT+Q LLE G+PYTG GV+AS M
Sbjct: 48 DAHPFDPGLQPISELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVLASALAM 107
Query: 464 DKVATS-LALNH-LAD--LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK AT L + H LA +L N D L P++ VKPA
Sbjct: 108 DKQATKRLWMTHGLATPRFAMLYANTDFDAVVADLGLPLI----------------VKPA 151
Query: 520 RDGCSTGVARLCCAEDL 536
R+G S G+ ++ A+ +
Sbjct: 152 REGSSIGLTKVIAADQM 168
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 41/207 (19%)
Query: 40 VVVKPTRAGSSIGVT---VAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
++VKP R GSSIG+T A + + +KA G+D V+ E F++ G+E T ++
Sbjct: 146 LIVKPAREGSSIGLTKVIAADQMRAAFEKAA-----GLDADVIAETFID-GAELTCPIVG 199
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G + PV + + ++ ++Y+ KY T Y P P +
Sbjct: 200 EGPTAEALPV--------------IKIVAPESNYDYQNKYF-TDDTQYLCPSTLPDALER 244
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A F+ LG +AR D T G ++N GM
Sbjct: 245 EVRALAVEAFRVLGCRGWARADVML-----------------TRDGKPYLLEMNTSPGMT 287
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHA 243
S + A G S+ + + ++ A
Sbjct: 288 GHSLVPMAARANGISYEDFVMQVLAAA 314
>gi|418696494|ref|ZP_13257503.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri str. H1]
gi|421107353|ref|ZP_15567905.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri str. H2]
gi|409956023|gb|EKO14955.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri str. H1]
gi|410007369|gb|EKO61079.1| D-alanine--D-alanine ligase N-terminal domain protein [Leptospira
kirschneri str. H2]
Length = 351
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 148/344 (43%), Gaps = 69/344 (20%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+
Sbjct: 70 EEFQKRYGVSRTDQVLSLDANIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL------ 123
Query: 464 DKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPAR 520
A+++A++ A+ L + V ++ K ++ +KL+ +KP
Sbjct: 124 ---ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTEAAITKLETLGFPQFLKPVE 180
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
G S ++ K L+E L
Sbjct: 181 GGSSVSTYKITNK-------KQLKERLT-------------------------------- 201
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSL 637
+LF S S ++M + +E++ GV+ + G + +P+ + G+
Sbjct: 202 --LLFESDS------KVMSQSFLEGIEVSCGVLERYRDGKFERVALPATEIVPGGEFFDF 253
Query: 638 EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
E K++ G +TP + +S + + + ++ +L G+SR D F+ V N E I
Sbjct: 254 ESKYEQGGSHEITP---ARISEQEMKRVQELAIAAHKSLGCNGYSRTD-FIIV-NKEPHI 308
Query: 698 IEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
+E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 309 LETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
>gi|427727567|ref|YP_007073804.1| D-alanine--D-alanine ligase [Nostoc sp. PCC 7524]
gi|427363486|gb|AFY46207.1| D-alanine--D-alanine ligase [Nostoc sp. PCC 7524]
Length = 369
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 135/337 (40%), Gaps = 63/337 (18%)
Query: 407 PMRHSINEWIKLAKENQATV-FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 465
P + ++ W ++ Q V F +HG GEDGT+Q LL VP+ G GV+ S MDK
Sbjct: 87 PQQQALERWQSPSQVAQVDVWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSALGMDK 146
Query: 466 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIV--DIWHELTSKLQCKTLCVKPARDGC 523
+A +A G+ + V + + P V + E+ + L +KPA G
Sbjct: 147 IAMKMAFEQ---AGIPQVKYKVITRAQVWSNPCVFPKLCDEIEAALGYPCF-IKPANLGS 202
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S G+++ ++L AL++ S+ R
Sbjct: 203 SVGISKARSRQELE---DALDQA------ASYDR-------------------------- 227
Query: 584 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 643
R++ + E+ V+G S++ +T + D E K+
Sbjct: 228 ------------RIIVEAGVVAREVECAVLGNDQPQASIVGEITY--NSDFYDYETKYTP 273
Query: 644 GTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
G L P M + + + Q + L A A+ G +R+D F GEVLI E+NT
Sbjct: 274 GKADLLIP----AMIPDEISRKIQDMALQAFAAVDAAGLARVDFFYVEATGEVLINEINT 329
Query: 703 VPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
+PG T +T + Q S +P + +++ L ER
Sbjct: 330 LPGFT-ATSMYPQLWSHSGIPFP-ELVDRLIQLALER 364
>gi|326385117|ref|ZP_08206786.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
gi|326196150|gb|EGD53355.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
Length = 357
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 112/293 (38%), Gaps = 63/293 (21%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADL 478
E+ VF +HG GEDGT+Q +LE +PY G GV+AS CMDK A +
Sbjct: 89 EDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLASSVCMDKAMAKEVAARAEIPQC 148
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
LT V +L D +L + VKPA G S GV+R E+L
Sbjct: 149 KWLTFRDGVDDPRQIL----TDAADQLGFP-----MFVKPANMGSSVGVSRAETLEELDA 199
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+ L ++ V +E +
Sbjct: 200 AINV----------------------------ALRYDDVVVIEEAVVGR----------- 220
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
EI V V+G SL P VK + E+K+ G + P P +S
Sbjct: 221 --------EIEVAVLGNAAPDASL-PG-EVKPGSEFYDYEDKYITGAAELMIPAP---LS 267
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
EA+ ++ AL+ G +R+D F L+ EVNT+PG TP+++
Sbjct: 268 DEAIADVRELAADAFVALRCAGLARVDFFYEEGGRGWLLNEVNTIPGFTPASM 320
>gi|407937472|ref|YP_006853113.1| D-alanine--D-alanine ligase [Acidovorax sp. KKS102]
gi|407895266|gb|AFU44475.1| D-alanine--D-alanine ligase [Acidovorax sp. KKS102]
Length = 329
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 118/298 (39%), Gaps = 65/298 (21%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA- 471
N L ++ A FIA+HG GEDGT+Q LE +PYTGPGVMAS MDKV T
Sbjct: 56 NALGDLKRDGYARCFIALHGRHGEDGTVQGALELLRIPYTGPGVMASAIAMDKVMTKRVW 115
Query: 472 -LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
L + + D +++E + P EL L VKP R+G S GV ++
Sbjct: 116 LAEGLPTPRYVWLAPDRQQREVVRTVP-----DELG-----LPLIVKPPREGSSIGVTKV 165
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
D+ V+ S + P++L E F+E +E+
Sbjct: 166 RGYSDMQEAVQ-------------LSAQYD--------PDVLC-EEFIEGEEVTCPVLGQ 203
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
NA L + + P + + K+Q +G+
Sbjct: 204 GANARALP-------------------VIRIVAPDGAYDYQNKYFTDDVKYQCPSGL--- 241
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
EA ++ QRI L A L G+ R D + + + ++E+NT PGMT
Sbjct: 242 --------PEAEEREIQRIVLEAYRTLGCRGWGRADLMIRASDRKPFLLEMNTSPGMT 291
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 75/209 (35%), Gaps = 34/209 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GSSIGVT G D + + + D V+ E F+E G E T VL G+
Sbjct: 149 LIVKPPREGSSIGVTKVRGYSDMQEAVQ--LSAQYDPDVLCEEFIE-GEEVTCPVLGQGA 205
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV + + D ++Y+ KY T V Y P P I+
Sbjct: 206 NARALPV--------------IRIVAPDGAYDYQNKYF-TDDVKYQCPSGLPEAEEREIQ 250
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG + R D S F ++N GM S
Sbjct: 251 RIVLEAYRTLGCRGWGRADLMIRASDRKPF----------------LLEMNTSPGMTGHS 294
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRFP 248
+ A G S+ + I+ A P
Sbjct: 295 LVPMSARASGISYEELCLRILADAALDTP 323
>gi|227486334|ref|ZP_03916650.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
gi|227235745|gb|EEI85760.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
Length = 347
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 141/357 (39%), Gaps = 78/357 (21%)
Query: 397 FTGFDIADELPMRHSINE---------WIKLAKENQATVFI--AVHGGIGEDGTLQSLLE 445
F FD ADE + I++ ++++KE+ I VHG GEDGT+Q L+
Sbjct: 51 FKDFDPADEFSLVKKIDKSTQASIADFLLEVSKEDLENTIILPVVHGTYGEDGTIQGFLD 110
Query: 446 AEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL 505
A G+ Y G G+++S CMDKV ++ D+ + + + K K D + +
Sbjct: 111 AVGLKYIGNGLLSSAICMDKVTSN-------DIFEKSKLRQAKYKY-CYKEDFDDDFMDS 162
Query: 506 TSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMP 565
L VKP+ +G S GV+R+ +D F +A G+
Sbjct: 163 CIAYVGLPLIVKPSANGSSVGVSRVENKKD-------------------FKKA-GL---- 198
Query: 566 NPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPS 625
E L ++ + +E++ EI + V+G ++ P+
Sbjct: 199 ----EALKYDRKLLVEELIIGQ-------------------EIELAVLGDSDNIDVSDPA 235
Query: 626 VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRID 685
+ + L + K+ + P M K K A EGF+R+D
Sbjct: 236 AYITDHV-FLDWDAKYFSKSTREELPYK---MDENDKQKAKDFARACYKAAGCEGFARVD 291
Query: 686 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF---FRKVLDLGSER 739
F D + I E+NT PG TPS+ A++ +Y F K++D G R
Sbjct: 292 IFYGNDR-QFYINEINTFPGFTPSSFFARMAMN----LYDVDFSSILDKLIDDGFRR 343
>gi|381187962|ref|ZP_09895524.1| D-alanine--D-alanine ligase [Flavobacterium frigoris PS1]
gi|379649750|gb|EIA08323.1| D-alanine--D-alanine ligase [Flavobacterium frigoris PS1]
Length = 325
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 143/351 (40%), Gaps = 73/351 (20%)
Query: 393 KHSWFTGFDIADELPM-RHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPY 451
K W D E P+ ++ + + K N VF A+HG GEDG +Q+ E +P
Sbjct: 43 KEKWVYVNDAETEFPIDKNDFSTIVDGKKINFDCVFNAIHGTPGEDGLMQAYFELLEIP- 101
Query: 452 TGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSK--L 509
+T D +L N L VL L V E+ K L
Sbjct: 102 --------QTSCDYYQAALTFNKRDFLSVLKPYGIKSAVSYYLNKGDVIYADEIVKKVGL 153
Query: 510 QCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
C VKP + G S G++++ A +L + IE+
Sbjct: 154 PC---FVKPNKAGSSFGISKVKTAAELPI----------------------AIEVAYQED 188
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
+I E F++ E+TVGVI G++ +++P +
Sbjct: 189 NEIIIEAFLD-------------------------GTEVTVGVIDYKGTI-TVLPITEIV 222
Query: 630 ESGDILSLEEKFQGGTGINLTPPPASI-MSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
D E K+ G + +TP S M+ + D K+ EL L+++GFSR + F+
Sbjct: 223 SENDFFDYEAKYLGKSQ-EITPARISDEMTKKVGDIAKRAYEL----LKMKGFSRTE-FI 276
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
V N E ++E+NT+PG+TP +++ QA++ + + F ++L S++
Sbjct: 277 IV-NDEPFMLEMNTIPGLTPESLIPQQAIAAGISL--EELFTNAIELSSQK 324
>gi|372276004|ref|ZP_09512040.1| D-alanine--D-alanine ligase [Pantoea sp. SL1_M5]
Length = 306
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 127/323 (39%), Gaps = 69/323 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ FIA+HG GEDGTLQ++LE +PYTG GVMAS MDK+ T L
Sbjct: 48 LTLKEQGFTKAFIALHGRGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 107
Query: 476 ADLGVLTINKDV---RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
L K V R++ D +D + L VKPA +G S G++R+
Sbjct: 108 G----LPSGKFVWLTRQQFD----AGLDAENNAAIAALGLPLFVKPACEGSSVGISRV-- 157
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
N S ++M ++ E F+
Sbjct: 158 --------------------NDLSALPAALDMAFKHDNDVLVEAFLSG------------ 185
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
E TV ++G ++PS+ +K + + E K+ + P
Sbjct: 186 -------------AEYTVAIVGD-----RILPSIEIKSASEFYDYEAKYISDDTQYVCPA 227
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+S E + +Q + AL G+ R+D + G ++E NT PGMT +++
Sbjct: 228 D---LSAEREAELQQLVLAAWRALGCRGWGRVDVMTD-GEGRFQLLEANTSPGMTSHSLV 283
Query: 713 IHQALSEQPPMYPHQFFRKVLDL 735
A +Q M Q +L+L
Sbjct: 284 PMAA--KQAGMSFPQLVAHILEL 304
>gi|294666421|ref|ZP_06731665.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292603790|gb|EFF47197.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 318
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 120/297 (40%), Gaps = 83/297 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-----SLALN--HLA 476
VF +HG G GEDG +Q L+EA GVPYTG V+ S MDK+ T SL L+ A
Sbjct: 72 VFNVLHGHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYA 131
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L +D+ + PI+ VKPA +G S GV+R
Sbjct: 132 RLAAGASAEDIHAAARQIGLPII----------------VKPANEGSSVGVSR------- 168
Query: 537 TVYVKA-LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
V+ +A LEE + +R G L+ E +E D
Sbjct: 169 -VFDQAQLEEAV-----TLAARYDGA----------LLMEQLIEGD-------------- 198
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+TV V+G + +PS+ + G K+ L P
Sbjct: 199 -----------ELTVAVLGD-----TALPSIRIVPKGQWYDYNAKYIAEDTQYLCPG--- 239
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ EA + +Q +A G+ R+D + +G++ ++EVNT PGMT +++
Sbjct: 240 -LEGEAEAQIRQLALDAFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLV 295
>gi|343407474|gb|AEM23743.1| VanA ligase [Enterococcus faecium]
Length = 316
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 72/286 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 87 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 146
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 147 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 179
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 180 ------------------------------------DELDYAIESARQYDSKILIEQAVS 203
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTEA 661
E+ V+G ++ ++ ++ I + ++ + G +T P + +S E
Sbjct: 204 GCEVGCAVLGNSAAL-AVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAEE 260
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 261 RGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 305
>gi|297564289|ref|YP_003683262.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 350
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
LA VF +HG GEDGT+Q +LE GVPY G GV+AS T MDK T L
Sbjct: 92 LALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVGNGVLASATGMDKATTKTLLRAAG- 150
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L + +DV +L+ P ++ + ++L VKPAR G S GV R+ +L
Sbjct: 151 ---LPVARDV-----VLRGPDDEVSPQERAELGLPVF-VKPARSGSSLGVTRVGDWSELE 201
Query: 538 VYVKALEE 545
VK E
Sbjct: 202 AAVKTARE 209
>gi|189423736|ref|YP_001950913.1| D-alanine--D-alanine ligase [Geobacter lovleyi SZ]
gi|229485956|sp|B3E3X9.1|DDL_GEOLS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|189419995|gb|ACD94393.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ]
Length = 313
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 73/328 (22%)
Query: 387 LVEGLKKHSWF--TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLL 444
L G+ H G+D + L +RH N + L +E FIA+HG GEDG +Q LL
Sbjct: 26 LKSGMAVHQALLAMGYD-STALDVRH--NVALILREEKIDLAFIALHGRYGEDGCIQGLL 82
Query: 445 EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHE 504
E +PYTG GV+AS M K+ + A A G+ R+ D +
Sbjct: 83 ELMQIPYTGSGVLASALAMHKLYSKQA---FAAAGLTITPYATVRQGDRCNA------EQ 133
Query: 505 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 564
L L + VKP ++G S GV + EDL AL+E
Sbjct: 134 LPFGL---PVVVKPVQEGSSVGVTIVKKPEDLQA---ALDEAFRY--------------- 172
Query: 565 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 624
+++ E ++ KG E+ VG++ + +
Sbjct: 173 ----DTLVLVEKYI---------------------KGQ----EVQVGILA-----NQPIG 198
Query: 625 SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRI 684
++ + + E K+ G ++ P + ++ K +Q+ AL +G+ R+
Sbjct: 199 AIEIVPKNEFYDFEAKYSDGMAEHIFP---ARLAEPLYQKVQQQGLQAHQALGCDGYCRV 255
Query: 685 DAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
D F+ +NG+ ++EVNT+PGMT ++L
Sbjct: 256 D-FLVTENGDCYLLEVNTLPGMTALSLL 282
>gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
Length = 366
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 117/282 (41%), Gaps = 60/282 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L A L +
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRD-AGLNIAPFIT 160
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R +D + ++T KL L +KPA G S GV+++ A + Y +A+
Sbjct: 161 LTRSNKDNYS------FEQVTEKLGLP-LFIKPANQGSSVGVSKVRNAAE---YQQAVAL 210
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+F H ++L S +
Sbjct: 211 --------AFDFDH----------------------KVLVESAIVGR------------- 227
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EI V+G S+ V + S + S + K+ +G + P A + T+A D+
Sbjct: 228 -EIECAVMGNDSPQASVCGEVVI--SDEFYSYDTKYINESGAQVIIPAA--IDTDASDRI 282
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ +AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 283 RAVALAAFSALECRGMARVDVFLTPDN-TVIINEINTLPGFT 323
>gi|384417858|ref|YP_005627218.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353460772|gb|AEQ95051.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 318
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 115/300 (38%), Gaps = 89/300 (29%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-----SLALN--HLA 476
VF +HG G GEDG +Q L+EA GVPYTG V+ S MDK+ T SL L+ A
Sbjct: 72 VFNVLHGHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYA 131
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L T D+ + P++ VKPA +G S GV+R+
Sbjct: 132 RLAAGTSAADIHAAAQQIGLPVI----------------VKPANEGSSVGVSRV------ 169
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
++ L +R G L+ E +E D
Sbjct: 170 ------FDQAQLEDAVTLAARYDGA----------LLMEQLIEGD--------------- 198
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP----P 652
E+TV V+G +PS+ + G K+ L P
Sbjct: 199 ----------ELTVAVLGDAA-----LPSIRIVPKGQWYDYNAKYIAEDTQYLCPGLEGE 243
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
P + + ALD + A G+ R+D + +G++ ++EVNT PGMT +++
Sbjct: 244 PEAQIRQLALDAFR--------AAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLV 295
>gi|357406915|ref|YP_004918839.1| D-alanine--D-alanine ligase [Methylomicrobium alcaliphilum 20Z]
gi|351719580|emb|CCE25256.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
(D-Ala-D-Ala ligase B) [Methylomicrobium alcaliphilum
20Z]
Length = 310
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 125/300 (41%), Gaps = 94/300 (31%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDG LQ +LEA +PYTG GV+AS MDK+ T L L
Sbjct: 68 VFNIIHGRGGEDGVLQGVLEAMRLPYTGSGVLASALSMDKLRTKLCWQGLG--------- 118
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDLT 537
L TP W L S+ + L VKPA +G S G+
Sbjct: 119 --------LPTPK---WFLLKSENDAQACIEKLGLPLIVKPALEGSSIGM---------- 157
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
S+A+ + E+ I F +++ +++ + N
Sbjct: 158 ------------------SKANSLTEL------IEAFRLAMQSGCDVYAEAWVSGN---- 189
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
E T+ V+ +P + ++ E K++ T P
Sbjct: 190 ---------EYTIAVLN-----GEALPVIRLETPNVFYDFEAKYRANTTRYHCPC----- 230
Query: 658 STEALD-KCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
LD + +QR++ +A AL +EG++R+DAF++ ++G+ +IEVNTVPGMT +++
Sbjct: 231 ---GLDAETEQRLQALAVSACEALAVEGWARVDAFID-NSGQTQLIEVNTVPGMTDHSLV 286
>gi|259047321|ref|ZP_05737722.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
gi|259036017|gb|EEW37272.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
Length = 357
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 116/283 (40%), Gaps = 60/283 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q L E +PY G GV+AS MDK+A+ HL G+ +
Sbjct: 97 VFPILHGPNGEDGTIQGLFEILDLPYVGCGVLASANGMDKIAS----KHLFQQAGIPQVP 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K D K+P I++ + L+ VKPA G S G+++ E+LT A+E
Sbjct: 153 FVPFVKADFKKSPEA-IYNRIEGTLRYPVF-VKPANMGSSVGISKATNREELTA---AIE 207
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E L + D + Q + + GN
Sbjct: 208 EAL-------------------------------KYDRRIVVEQGIDAREVEVAVLGND- 235
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E+ V+G+ VK++G EK+ T L P A + E K
Sbjct: 236 --EVNTSVVGEV-----------VKQAG-FYDYNEKYINNT-TTLQIPAA--IPEEVSAK 278
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
++ E A+ G +R D F+ + EV I EVNT+PG T
Sbjct: 279 IREYAETAFRAIDGSGLTRCDFFLT-ETQEVFINEVNTMPGFT 320
>gi|422013392|ref|ZP_16360019.1| D-alanine--D-alanine ligase [Providencia burhodogranariea DSM
19968]
gi|414103349|gb|EKT64926.1| D-alanine--D-alanine ligase [Providencia burhodogranariea DSM
19968]
Length = 306
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 129/315 (40%), Gaps = 71/315 (22%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDGT+Q +LE GVPYTG GVMAS MDK+ T L + L ++
Sbjct: 59 FIALHGRGGEDGTIQGMLEFLGVPYTGSGVMASALSMDKLRT----KQLWEGAGLPVSPY 114
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
+ + + EL + L L VKP+ +G S G++++
Sbjct: 115 IYLNQTQFSSLAKLQIQELVAHLGLP-LIVKPSLEGSSVGMSKV---------------- 157
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
++F +E+ E ++ E +W+
Sbjct: 158 ------DNFDELSAALELAFRFDETVLVE----------------------------KWL 183
Query: 607 ---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E TV V+ + +PS+ ++ G E K+ P S E L+
Sbjct: 184 SGPEFTVAVLSE-----QTLPSIRIQSPGIFYDYEAKYLSDETQYFCPSGLS----EELE 234
Query: 664 KCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
+ + A A+ G+ R+D + ++G+ ++EVNT PGMT +++ A Q
Sbjct: 235 STLSELAMRAYKAVGCRGWGRVDVMQD-NDGQFYLLEVNTSPGMTSHSLVPMAA--RQAG 291
Query: 723 MYPHQFFRKVLDLGS 737
M Q ++L+L +
Sbjct: 292 MDFSQLVVRILELAN 306
>gi|442323127|ref|YP_007363148.1| D-alanine--D-alanine ligase [Myxococcus stipitatus DSM 14675]
gi|441490769|gb|AGC47464.1| D-alanine--D-alanine ligase [Myxococcus stipitatus DSM 14675]
Length = 318
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 127/320 (39%), Gaps = 89/320 (27%)
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ +LP R L E ++AVHG GEDG+LQ LLE+ +PYTG GV+AS
Sbjct: 54 DVGKDLPAR--------LVAEKVDVAWLAVHGRYGEDGSLQGLLESMFIPYTGSGVLASA 105
Query: 461 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------- 513
MDKV K V D + TP + + S L
Sbjct: 106 LGMDKV----------------YAKQVFVAHD-IPTPAYRAFQDEASALAAGDSLPFPFP 148
Query: 514 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 573
+ VKP+R+G S GV +C D Y A+ + ++ G L+
Sbjct: 149 VVVKPSREGSSVGV-HICKTRD--AYDAAVRDA---------AKYAGT----------LL 186
Query: 574 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 633
E FV+ E+ Q + + L GVI V+ + +
Sbjct: 187 VEQFVKGREV----QGGVLDDEAL-------------GVI-------------EVRAARE 216
Query: 634 ILSLEEKFQGGTGIN-LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 692
+ K++ GTG L P P + + + + AL G SR D V +
Sbjct: 217 FYDYDAKYKAGTGTQYLFPAP---LPPDQYARVNEVCLGAHRALGCAGGSRSDVIVT-EG 272
Query: 693 GEVLIIEVNTVPGMTPSTVL 712
G V ++E NT+PGMT +++L
Sbjct: 273 GAVFLLETNTLPGMTATSLL 292
>gi|337288572|ref|YP_004628044.1| D-alanine--D-alanine ligase [Thermodesulfobacterium sp. OPB45]
gi|334902310|gb|AEH23116.1| D-alanine--D-alanine ligase [Thermodesulfobacterium geofontis
OPF15]
Length = 312
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 145/336 (43%), Gaps = 84/336 (25%)
Query: 382 QVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQ 441
+VV +E L F FD A +LP + + AKE F+ VHG GEDGTLQ
Sbjct: 28 EVVKKALEKLGHKYEF--FDPAQDLP------KLAQRAKEFDCA-FLVVHGPGGEDGTLQ 78
Query: 442 SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LTINKDVRRKEDLLKTPI 498
L++ G+PY G GV+ S M K S +L LA L V T +KD +++KT
Sbjct: 79 GFLDSIGLPYQGAGVLGSALAMHK-GISKSLYKLAGLNVPEGKTFSKD--SSFEIIKTYG 135
Query: 499 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRA 558
I L VKPA G S G++ + +DL V+A +F
Sbjct: 136 EKIGF---------PLVVKPATQGSSIGLSVVKDKKDLKKAVEA-----------AF--- 172
Query: 559 HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCG 617
N EI I E ++ KG EITVG++ K
Sbjct: 173 -------NVDREI-ILEKYL---------------------KGK----EITVGILDDKPL 199
Query: 618 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-AL 676
+ ++P V+ +I E K+ G + P S E L K Q LIA+ L
Sbjct: 200 PVVEIVPKVS-----EIFDYETKYTPGLSEEICPARLS----ERLTKKAQEYGLIAHKTL 250
Query: 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+L +SR D + D E+ ++E NT+PGMT +++L
Sbjct: 251 KLRHYSRTDMIIVED--EIYVLETNTIPGMTETSLL 284
>gi|308185661|ref|YP_003929792.1| D-alanine--D-alanine ligase [Pantoea vagans C9-1]
gi|308056171|gb|ADO08343.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1]
Length = 306
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 125/320 (39%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ FIA+HG GEDGT+Q++LE +PYTG GVMAS MDK+ T L
Sbjct: 48 LTLKEQGFTKAFIALHGRGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 107
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
L K V + + + L L VKPA +G S G++R+
Sbjct: 108 G----LPSGKFVWLTRQQFDAGLDAESNAAIAALGLP-LFVKPACEGSSVGISRV----- 157
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
N S ++M + ++ E F+
Sbjct: 158 -----------------NDLSALPAALDMAFKHDDDVLVEAFLSG--------------- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TV ++G ++PS+ +K + + E K+ + P
Sbjct: 186 ----------AEYTVAIVGD-----RILPSIEIKSASEFYDYEAKYISDDTQYVCPAD-- 228
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + +Q + AL G+ R+D + G ++E NT PGMT +++
Sbjct: 229 -LSAEREAELQQLVLAAWRALGCRGWGRVDVMTD-GEGRFQLLEANTSPGMTSHSLVPMA 286
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A +Q M Q +L+L
Sbjct: 287 A--KQAGMSFPQLVAHILEL 304
>gi|343519084|ref|ZP_08756069.1| D-alanine--D-alanine ligase [Haemophilus pittmaniae HK 85]
gi|343392850|gb|EGV05410.1| D-alanine--D-alanine ligase [Haemophilus pittmaniae HK 85]
Length = 306
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 124/318 (38%), Gaps = 67/318 (21%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G+D P +++ + L K+ VF +HG GEDGT+Q LLE G+PYTG GVMA
Sbjct: 37 GYDAYPIDPQEYNVAD---LKKDGFERVFNILHGRGGEDGTMQGLLEQIGLPYTGCGVMA 93
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S MDK+ T + V E + K VD+ L VKP
Sbjct: 94 SALTMDKMRTKMLWK--------AFGLPVAEMEIVTKQNFVDLDPAAVVAKLGLPLMVKP 145
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
+ +G S G+ + VK LE ++ N L F+ V
Sbjct: 146 SLEGSSVGLTK----------VKQLE------------------QLKNAVAYALKFDETV 177
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+E L E+TV V+G ++P+V + G+ +
Sbjct: 178 LIEEWLAGE-------------------ELTVPVLG-----GKVLPAVKIVPEGEFYDYD 213
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ P + +S E + ++ + + G+SRID + G ++
Sbjct: 214 AKYISDNTQYFCP---AGLSAEREQELADLVKRAYDVVGCRGWSRIDVMTDA-QGHFRLV 269
Query: 699 EVNTVPGMTPSTVLIHQA 716
EVNT PGMT ++ A
Sbjct: 270 EVNTNPGMTSHSLFPKSA 287
>gi|339327307|ref|YP_004687000.1| D-alanine--D-alanine ligase [Cupriavidus necator N-1]
gi|338167464|gb|AEI78519.1| D-alanine--D-alanine ligase Ddl [Cupriavidus necator N-1]
Length = 327
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+LA VFIA+HG GEDGT+Q LLE GVPYTG GV+AS MDK AT
Sbjct: 61 ELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGVPYTGSGVLASAMAMDKQATKR------ 114
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLC 531
L + D L TP + H T L VKPAR+G S G+ ++
Sbjct: 115 ----LWMTHD-------LATPRFAMLHADTDFDAVAADLGLPLIVKPAREGSSIGLTKVT 163
Query: 532 CAEDL 536
A+ +
Sbjct: 164 AADQM 168
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 41/207 (19%)
Query: 40 VVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
++VKP R GSSIG VT A + + +KA +D+ V+ E F++ G+E T ++
Sbjct: 146 LIVKPAREGSSIGLTKVTAADQMRAAFEKAA-----ALDNDVIAETFID-GAELTCPIVG 199
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G + PV + + +A ++Y+ KY T Y P V
Sbjct: 200 EGDSAEALPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDPEVER 244
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A ++ LG +AR D G ++N GM
Sbjct: 245 EVRALAVQSYRVLGCRGWARADLMLRAD-----------------GKPFLLEMNTSPGMT 287
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHA 243
S + A VG S+ + + ++ A
Sbjct: 288 GHSLVPMAARAVGISYEDFVMQVVAAA 314
>gi|442609545|ref|ZP_21024282.1| D-alanine--D-alanine ligase [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441749017|emb|CCQ10344.1| D-alanine--D-alanine ligase [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 302
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 119/300 (39%), Gaps = 77/300 (25%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-A 476
L++ N VFIA+HG GEDGT+Q LE G+PYTG GV+ S MDKV HL +
Sbjct: 52 LSQLNVDRVFIALHGRGGEDGTVQGALEYLGLPYTGSGVLGSALAMDKVRC----KHLFS 107
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
G+ T +V + H + VKP+ +G S G+++ A +L
Sbjct: 108 AAGLSTSPYEVVDANQPFDVEAIIERH--------GKVMVKPSHEGSSIGMSQASNANEL 159
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
++ AL+E F SQ +
Sbjct: 160 SI---ALQEAF------------------------------------KFDSQVLVE---- 176
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
RW+ E TV ++G ++P + + + K+Q T P
Sbjct: 177 -------RWITGREFTVAMLGS-----DVLPVIEMTTPNSFYDYQAKYQSTTTQYHCPAA 224
Query: 654 ASIMSTEALDK-CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S T L K +L+ + G+ R+DA + G ++EVNTVPGMT +++
Sbjct: 225 LSSGETSTLQALAKHAFDLVGAS----GWGRVDAMQD-KEGHFYLLEVNTVPGMTEKSLV 279
Score = 46.6 bits (109), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 45/206 (21%)
Query: 38 GKVVVKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIV 94
GKV+VKP+ GSSIG++ A + +L++A D +V+VE ++ G EFT +
Sbjct: 135 GKVMVKPSHEGSSIGMSQASNANELSIALQEAF-----KFDSQVLVERWIT-GREFTVAM 188
Query: 95 LDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
L G D PV+ + T ++ ++Y+ KY T YH P
Sbjct: 189 L----GSDVLPVIEMTT--------------PNSFYDYQAKYQST-TTQYHCPAALSSGE 229
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
++++ A F +G + R+D + G ++N + G
Sbjct: 230 TSTLQALAKHAFDLVGASGWGRVDAM-----------------QDKEGHFYLLEVNTVPG 272
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
M + S + A VG + ++ I+
Sbjct: 273 MTEKSLVPMAAKAVGLTFEQLVVRIL 298
>gi|407697308|ref|YP_006822096.1| D-alanine--D-alanine ligase 2 [Alcanivorax dieselolei B5]
gi|407254646|gb|AFT71753.1| D-alanine--D-alanine ligase 2 [Alcanivorax dieselolei B5]
Length = 321
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 125/318 (39%), Gaps = 86/318 (27%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
FIA+HG GEDG +Q +LE GVPYTG GVMAS MDKV + +
Sbjct: 67 VAFIALHGRGGEDGVIQGVLEHLGVPYTGSGVMASAIGMDKVRSKWLWKGVG-------- 118
Query: 485 KDVRRKEDLLKTPI-----VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
L TP D E ++L L VKPA +G S G+A++ ED T
Sbjct: 119 ---------LPTPAFHVVGADDDGEALAELGF-PLMVKPAHEGSSIGMAKV---EDQTQL 165
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
KAL++ +R + E+L +
Sbjct: 166 RKALDD----------ARQY--------------------DSEVLVEA------------ 183
Query: 600 KGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
WV E TV V+G+ ++P++ +K + K+Q + L P S
Sbjct: 184 -----WVNGPEYTVSVVGE-----QVLPAIRLKTPNQFYDYQAKYQSNSTEYLCPAGLSD 233
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
L R + +G+ R+D + + G ++EVNTVPGMT + L+ A
Sbjct: 234 EDESELRALSLRAFKVVGC---QGWGRVDVMRD-EQGRWQLLEVNTVPGMTDHS-LVPMA 288
Query: 717 LSEQPPMYPHQFFRKVLD 734
+P R +LD
Sbjct: 289 ARAAGDEFPILVARILLD 306
>gi|390436832|ref|ZP_10225370.1| D-alanine--D-alanine ligase [Pantoea agglomerans IG1]
Length = 306
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 127/323 (39%), Gaps = 69/323 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ FIA+HG GEDGTLQ++LE +PYTG GVMAS MDK+ T L
Sbjct: 48 LTLKEQGFTKAFIALHGRGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 107
Query: 476 ADLGVLTINKDV---RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
L K V R++ D +D + L VKPA +G S G++R+
Sbjct: 108 G----LPSGKFVWLTRQQFD----AGLDAENNAAIAALGLPLFVKPACEGSSVGISRV-- 157
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
N S ++M ++ E F+
Sbjct: 158 --------------------NDLSALPAALDMAFKHDNDVLVEAFLSG------------ 185
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
E TV ++G ++PS+ +K + + E K+ + P
Sbjct: 186 -------------AEYTVAIVGD-----RILPSIEIKSASEFYDYEAKYISDDTQYVCPA 227
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+S E + +Q + AL G+ R+D + G ++E NT PGMT +++
Sbjct: 228 D---ISAEREAELQQLVLAAWRALGCRGWGRVDVMTD-GEGRFQLLEANTSPGMTSHSLV 283
Query: 713 IHQALSEQPPMYPHQFFRKVLDL 735
A +Q M Q +L+L
Sbjct: 284 PMAA--KQAGMSFPQLVAHILEL 304
>gi|238752433|ref|ZP_04613910.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
gi|238709366|gb|EEQ01607.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
Length = 287
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 119/291 (40%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L I+
Sbjct: 39 VFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASG----LPISP 94
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V +T + +KL L VKP+ +G S G++++
Sbjct: 95 YVALNRQQFETLSSEELSASVAKLGLP-LIVKPSHEGSSVGMSKV--------------- 138
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ S G + E F ++L +W
Sbjct: 139 -------DKISELQGA-----------LVEAFRHDTDVLI-----------------EKW 163
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G ++PS+ ++ G E K+ P S +S E L
Sbjct: 164 LSGPEFTVAILGD-----EVLPSIRIQAPGVFYDYEAKYLSDETQYFCP---SGLSAE-L 214
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ + L A AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 215 EQQLAALSLQAYQALGCSGWGRVDVMQDSD-GSFYLLEVNTSPGMTSHSLV 264
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
++VKP+ GSS+G++ +D + + +G ++E D V++E +L G EFT +L
Sbjct: 122 LIVKPSHEGSSVGMS----KVDKISELQGALVEAFRHDTDVLIEKWLS-GPEFTVAIL-- 174
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G + P S+ ++ ++Y KYL + + Y P +
Sbjct: 175 --GDEVLP--------------SIRIQAPGVFYDYEAKYL-SDETQYFCPSGLSAELEQQ 217
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+ + +Q LG + R+D V S+ G+ ++N GM
Sbjct: 218 LAALSLQAYQALGCSGWGRVD---------VMQDSD--------GSFYLLEVNTSPGMTS 260
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A + G S S ++ I+
Sbjct: 261 HSLVPMAARQSGLSFSQLVARIL 283
>gi|427418940|ref|ZP_18909123.1| D-alanine--D-alanine ligase [Leptolyngbya sp. PCC 7375]
gi|425761653|gb|EKV02506.1| D-alanine--D-alanine ligase [Leptolyngbya sp. PCC 7375]
Length = 353
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 129/321 (40%), Gaps = 72/321 (22%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F +HG GEDGT+Q L E +PY G GV+AS MDK+A A A +G+ +
Sbjct: 92 FPVLHGPNGEDGTIQGLFELMQMPYVGCGVLASAVGMDKLAMKSA---FAQVGLPQVKYM 148
Query: 487 VRRKEDLLKTPIV------DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ + P V DI ELT C VKPA G S G+A++ +DL
Sbjct: 149 EVLRSQVYSNPCVFPKLCDDI--ELTLGYPC---FVKPANLGSSVGIAKVKDRQDLEA-- 201
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
AL+ S+ R R++ +
Sbjct: 202 -ALDNA------ASYDR--------------------------------------RIIVE 216
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIMS 658
E+ ++G S++ ++ + D E K+ G P PA I+
Sbjct: 217 AGVVAREVECAILGNDNPKASVIGEISFE--ADFYDYETKYTSGQADLAIPASLPADIV- 273
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
T ++ + + I A G SR+D F D GEVLI E+NT PG T ++ ++ L
Sbjct: 274 TAIQEQAVKAFQAIDGA----GLSRVDFFYLEDTGEVLINEINTFPGFTATS--MYPMLW 327
Query: 719 EQPPMYPHQFFRKVLDLGSER 739
+ + Q +++ LG ER
Sbjct: 328 KAAGVEFDQLVDRLIQLGLER 348
>gi|358011235|ref|ZP_09143045.1| D-alanine-D-alanine ligase A [Acinetobacter sp. P8-3-8]
Length = 362
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 132/317 (41%), Gaps = 66/317 (20%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NHLADLGVLT 482
VF +HG +GEDG LQ +L+ +P+ G V++S CMDK T L + +A LT
Sbjct: 99 VVFPIIHGTLGEDGALQGMLKMLDLPFVGSDVLSSAVCMDKDVTKRLLQGSGIAVAPFLT 158
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
++ P + E+ + L VKPA G S GV+++ E+ Y+KA
Sbjct: 159 VHS---------YNPYEISFQEVQNALGLPVF-VKPANQGSSVGVSKV---ENEQEYLKA 205
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L+ E N ++ E F+ KG
Sbjct: 206 LDYAF---------------EYDNK----VLIEKFI---------------------KGR 225
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI GV+G S+ V VK S S E K+ + P +++S E
Sbjct: 226 ----EIECGVLGNYYPKASVCGEVVVKSS--FYSYEAKYIDNQSSEVVIP--ALISEEES 277
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
K + L G +R+D F+ + GE+L+ EVNT+PG T ++ ++ L E
Sbjct: 278 KKLRDISIKAFKVLGCLGLARVDFFL-TEKGEILLNEVNTLPGFTNNS--MYPKLWENTG 334
Query: 723 MYPHQFFRKVLDLGSER 739
+ + ++L+L ER
Sbjct: 335 ISYSELITQLLELALER 351
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 97/241 (40%), Gaps = 45/241 (18%)
Query: 6 FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKK 65
F+TV S+ N E+S V N L V VKP GSS+GV+ + LK
Sbjct: 156 FLTVHSY-------NPYEISFQEVQNALGL---PVFVKPANQGSSVGVSKVENEQEYLK- 204
Query: 66 AKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE 125
A E D++V++E F++G ++ G + +P + EV +
Sbjct: 205 ALDYAFE-YDNKVLIEKFIKGRE------IECGVLGNYYPKASVCGEVVV---------- 247
Query: 126 KDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSS 185
K + ++Y KY+ Q P +R+ + F+ LG AR+D +FL
Sbjct: 248 KSSFYSYEAKYIDNQSSEVVIPALISEEESKKLRDISIKAFKVLGCLGLARVD-FFL--- 303
Query: 186 THVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACS 245
TE G IL ++N + G S + G S+S ++ ++ A
Sbjct: 304 -------------TEKGEILLNEVNTLPGFTNNSMYPKLWENTGISYSELITQLLELALE 350
Query: 246 R 246
R
Sbjct: 351 R 351
>gi|456388620|gb|EMF54060.1| ddlA protein [Streptomyces bottropensis ATCC 25435]
Length = 385
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 143/352 (40%), Gaps = 72/352 (20%)
Query: 365 IEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQA 424
+ A EPDR A T R V +L E ++ D A+ + +S + A
Sbjct: 64 LTADEPDRMAITDR-RTPSVEELAES-REGGVVLPVDPANRE-VVYSEPGSVPKALGEVD 120
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLG 479
VF +HG GEDGTLQ +LE GVPY G GV+AS K M +V TS L
Sbjct: 121 VVFPVLHGPYGEDGTLQGMLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLK--VGPY 178
Query: 480 VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
V+ ++ + E + I+D+ E L VKPAR G S G+ ++ +DL
Sbjct: 179 VVIRPREWQLDEAAARKKIIDLAGE-----HGWPLFVKPARAGSSIGITKV---DDLAGL 230
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
+A+ E ++ +++
Sbjct: 231 DEAIAEA--------------------------------------------QRHDPKILV 246
Query: 600 KGNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASI 656
+ R EI GV+ + G S+ + E+ + K+ I+ TP PA +
Sbjct: 247 EAALRGREIECGVLEFEDGPRASVPAEIPPPEAHAYYDFDAKY-----IDSTPGIVPAPL 301
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + + ++ +A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 302 TPEETAEVRRLAVDAF-DAASCEGLVRADFFLT-EDGEFVINEINTLPGFTP 351
>gi|399519382|ref|ZP_10760177.1| D-alanine--D-alanine ligase [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399112478|emb|CCH36735.1| D-alanine--D-alanine ligase [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 313
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 36/146 (24%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+ R LA+E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 49 GIDVGDDFLQR--------LAREKIDRAFIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 100
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 513
S MDK+ T + L L TP + LTS+ C+
Sbjct: 101 SALAMDKLRTKQVWHSLG-----------------LPTPRHAV---LTSQADCEAAATEL 140
Query: 514 ---LCVKPARDGCSTGVARLCCAEDL 536
L VKPA +G S G+A++ E L
Sbjct: 141 GFPLIVKPAHEGSSIGMAKVDSVEAL 166
>gi|21241551|ref|NP_641133.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. citri str.
306]
gi|381171103|ref|ZP_09880253.1| D-alanine--D-alanine ligase B [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|418521040|ref|ZP_13087086.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|39930906|sp|Q8PPA6.1|DDL_XANAC RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|21106902|gb|AAM35669.1| D-alanine-D-alanine ligase B [Xanthomonas axonopodis pv. citri str.
306]
gi|380688498|emb|CCG36740.1| D-alanine--D-alanine ligase B [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|410703016|gb|EKQ61513.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 318
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 119/297 (40%), Gaps = 83/297 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-----SLALN--HLA 476
VF +HG G GEDG +Q L+EA GVPYTG V+ S MDK+ T SL L+ A
Sbjct: 72 VFNVLHGHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYA 131
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L +D+ + PI+ VKPA +G S GV+R
Sbjct: 132 RLAAGASAEDIHAAARQIGLPII----------------VKPANEGSSVGVSR------- 168
Query: 537 TVYVKA-LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
V+ +A LEE + +R G L+ E +E D
Sbjct: 169 -VFDQAQLEEAV-----TLAARYDGA----------LLMEQLIEGD-------------- 198
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+TV V+G + +PS+ + G K+ L P
Sbjct: 199 -----------ELTVAVLGD-----TALPSIRIVPKGQWYDYNAKYIADDTQYLCPG--- 239
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ EA + +Q A G+ R+D + +G++ ++EVNT PGMT +++
Sbjct: 240 -LEGEAEAQIRQLALDAFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLV 295
>gi|398914056|ref|ZP_10656780.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM49]
gi|398179265|gb|EJM66881.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM49]
Length = 364
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 112/474 (23%), Positives = 184/474 (38%), Gaps = 142/474 (29%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 337
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
S+ + P + L + E+ A+ P +A+ Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQELLGH--- 98
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 508
S CMDK ++K + R L TP V + + E+ S+
Sbjct: 134 GSAVCMDK----------------DVSKRLLRDAGLAVTPFVTLTRATAARTGFAEVQSR 177
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
L L VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVT---DEAEYTSAVELAL------SFD------------ 215
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 628
++L S + + EI V+G ++ S + V
Sbjct: 216 ------------TKVLVESAVSGR--------------EIECAVLGNEDAIASGCGEIVV 249
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRID 685
+ S + K+ T + P +S EA ++ + L A Q+ G +R+D
Sbjct: 250 RSG--FYSYDSKYIDDTAAEVVVPAN--ISVEASERIRA---LAVEAFQILGCSGLARVD 302
Query: 686 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
F+ D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 303 VFLT-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVTRLIELALEK 353
>gi|390990596|ref|ZP_10260879.1| D-alanine--D-alanine ligase B [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372554688|emb|CCF67854.1| D-alanine--D-alanine ligase B [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 318
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 119/297 (40%), Gaps = 83/297 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-----SLALN--HLA 476
VF +HG G GEDG +Q L+EA GVPYTG V+ S MDK+ T SL L+ A
Sbjct: 72 VFNVLHGHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYA 131
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L +D+ + PI+ VKPA +G S GV+R
Sbjct: 132 RLAAGASAEDIHAAARQIGLPII----------------VKPANEGSSVGVSR------- 168
Query: 537 TVYVKA-LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
V+ +A LEE + +R G L+ E +E D
Sbjct: 169 -VFDQAQLEEAV-----TLAARYDGA----------LLMEQLIEGD-------------- 198
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+TV V+G + +PS+ + G K+ L P
Sbjct: 199 -----------ELTVAVLGD-----TALPSIRIVPKGQWYDYNAKYIADDTQYLCPG--- 239
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ EA + +Q A G+ R+D + +G++ ++EVNT PGMT +++
Sbjct: 240 -LEGEAEAQIRQLALDAFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLV 295
>gi|384135269|ref|YP_005517983.1| D-alanine--D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289354|gb|AEJ43464.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 385
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 115/477 (24%), Positives = 185/477 (38%), Gaps = 134/477 (28%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG + E +VSL S +V + A + + T + S D
Sbjct: 10 VGVIFGGKSGEHEVSLQSAKSV---MDALDPLHYTTIPIGISKDGR-------------- 52
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTS-HLRN------QVVNDLVEGLKKH 394
W H + A +EA +P AA S H +N + +N ++GL
Sbjct: 53 ---W---------HVGKGAWKA-LEAKQP--AALPSQHAQNGPSASKRFINPEIQGLSP- 96
Query: 395 SWFTGFDIADELPMRHSINEWIKLAKENQA-TVFIAVHGGIGEDGTLQSLLEAEGVPYTG 453
+ ++ S +W+ A N+ VF +HG GEDGT+Q LLE G+PY G
Sbjct: 97 -----------VEVKRS-PDWLPPALVNEIDVVFPVLHGTFGEDGTIQGLLEMVGIPYVG 144
Query: 454 PGVMASKTCMDKVA-----TSLALNHLADLGVLTI------NKDVRRKEDLLKTPIVDIW 502
GV+AS MDK+A +++ + +G ++ VR E+ L P
Sbjct: 145 SGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWAQDDSRIVREIEEELGYP----- 199
Query: 503 HELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMI 562
C VKPA G S G+++ +L V+A+ L S+ R
Sbjct: 200 --------C---FVKPANLGSSVGISKARNQREL---VEAVHLAL------SYDRR---- 235
Query: 563 EMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 622
+I E ++ EI +G++G + S+
Sbjct: 236 ---------VIVEEAIDAR-------------------------EIEIGILGNDDPIASV 261
Query: 623 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFS 682
+ K + E K+Q G P S +A++ R A+ G +
Sbjct: 262 AGEIIPKR--EFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIR---AFQAIDGSGLA 316
Query: 683 RIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
R+D FV G VL+ E+NT+PG T + ++ L E + + ++++L ER
Sbjct: 317 RVDFFVERGTGRVLVNEINTMPGFTRFS--MYPKLWEASGLAYDKLLDRLIELALER 371
>gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus champanellensis 18P13]
Length = 357
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 127/315 (40%), Gaps = 65/315 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q L++ +PY G G++AS +CMDKV T L++ + T
Sbjct: 100 VFPVLHGKNGEDGTIQGLMDLARIPYVGCGLLASASCMDKVHTHTVLDYNK---IRTARW 156
Query: 486 DVRRKEDL--LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+ + DL L I EL L VKPA G S G+ + AE L VK
Sbjct: 157 RMIGQRDLNRLDACCAQIGEELGY-----PLFVKPANCGSSIGINKATDAETLKDAVKI- 210
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+FS + ++ E F++
Sbjct: 211 ----------AFSHDNK-----------VVIEEFIQGK---------------------- 227
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E+ V V G S + ++ D E K+ GT P + + ++
Sbjct: 228 ---ELEVAVFGYDNPFASFVGE--IEPCNDFYDYEAKYILGTSKLYIP---ARIDADSEK 279
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+ ++ AL +G SR+D F+ D G V++ E+NT+PG TP + ++ L E M
Sbjct: 280 EIRETAVAAYKALGCKGLSRVDFFLKQD-GTVILNEINTMPGFTP--ISMYPKLMENLGM 336
Query: 724 YPHQFFRKVLDLGSE 738
K+L+ E
Sbjct: 337 SYSYLIDKLLEQAIE 351
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 36/202 (17%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSSIG+ A ++LK A I D++VV+E F++G A+ G+
Sbjct: 184 VKPANCGSSIGINKATDA-ETLKDAVKIAFSH-DNKVVIEEFIQGKELEVAVF-----GY 236
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
D +P E+E + ++Y KY+ Y P R IRE
Sbjct: 237 D-NPFASFVGEIE----------PCNDFYDYEAKYILGTSKLY-IPARIDADSEKEIRET 284
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A ++ LG +R+D +FL GT++ +IN + G S
Sbjct: 285 AVAAYKALGCKGLSRVD-FFLKQD----------------GTVILNEINTMPGFTPISMY 327
Query: 222 FQQASKVGFSHSNILRTIIGHA 243
+ +G S+S ++ ++ A
Sbjct: 328 PKLMENLGMSYSYLIDKLLEQA 349
>gi|443623872|ref|ZP_21108359.1| putative D-alanine--D-alanine ligase 1 [Streptomyces
viridochromogenes Tue57]
gi|443342607|gb|ELS56762.1| putative D-alanine--D-alanine ligase 1 [Streptomyces
viridochromogenes Tue57]
Length = 385
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 119/292 (40%), Gaps = 71/292 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLK--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ R E + I+D+ + L VKPAR G S G+ ++ +DL+
Sbjct: 180 VIRPREWERDESAARKKIIDLAGD-----HGWPLFVKPARAGSSIGITKV---DDLSALD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
A+ E ++ +++ +
Sbjct: 232 DAIAEA--------------------------------------------QRHDPKILVE 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S + ++ E K+ I+ TP PA +
Sbjct: 248 TALRGREIECGVLEFEDGPRASAPAEIPPPDAHAYYDFEAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + QR+ + A A EG R D F+ + GE +I E+NT+PG TP
Sbjct: 303 PEETAE--VQRLAVDAFEAASCEGLVRADFFLT-EEGEFVINEINTMPGFTP 351
>gi|429213580|ref|ZP_19204744.1| D-alanyl-alanine synthetase A [Pseudomonas sp. M1]
gi|428155175|gb|EKX01724.1| D-alanyl-alanine synthetase A [Pseudomonas sp. M1]
Length = 364
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 127/315 (40%), Gaps = 62/315 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
+F VHG GEDG LQ LL +P+ G V+ S CMDK ++ L D G+
Sbjct: 101 VIFPIVHGTQGEDGCLQGLLRMADIPFVGADVLGSAICMDK---DVSKRLLRDAGIAITP 157
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ + +TP + +L L VKPA G S GV+++ ED YV A++
Sbjct: 158 FITLTRANAARTPFAEAQRQLG-----LPLFVKPANLGSSVGVSKV---EDEAGYVAAVQ 209
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+ L +F D++L + +
Sbjct: 210 QAL------AFD------------------------DKVLVEAAVNGR------------ 227
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
EI V+G + S + V+ G S + K+ + P + + A ++
Sbjct: 228 --EIECAVLGNDEPIASGCGEIVVR--GGFYSYDSKYIDEDAARVVVP--ADIDAAACER 281
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
+Q L G +R+D F+ D G+VL+ E+N++PG T + ++ L + M
Sbjct: 282 IRQLAVEAFQVLGCSGLARVDVFLTGD-GQVLVNELNSLPGFT--RISMYPKLWQAAGMS 338
Query: 725 PHQFFRKVLDLGSER 739
+ +++DL ER
Sbjct: 339 YSELVSRLIDLALER 353
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 41/208 (19%)
Query: 42 VKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP GSS+GV+ G + ++++A DD+V+VE + G E VL
Sbjct: 184 VKPANLGSSVGVSKVEDEAGYVAAVQQALAF-----DDKVLVEAAVNG-REIECAVL--- 234
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D P+ G ++ + ++Y KY+ P I
Sbjct: 235 -GND-EPIA----------SGCGEIVVRGGFYSYDSKYIDEDAARVVVPADIDAAACERI 282
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R+ A FQ LG AR+D VF + + G +L ++N + G +
Sbjct: 283 RQLAVEAFQVLGCSGLARVD---------VFLTGD--------GQVLVNELNSLPGFTRI 325
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSR 246
S + G S+S ++ +I A R
Sbjct: 326 SMYPKLWQAAGMSYSELVSRLIDLALER 353
>gi|304396565|ref|ZP_07378446.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
gi|304356074|gb|EFM20440.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
Length = 306
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ FIA+HG GEDGT+Q++LE +PYTG GVMAS MDK+ T L
Sbjct: 48 LTLKEQGFTKAFIALHGRGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 107
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
L K V + + + + + L L VKPA +G S G++R+ D
Sbjct: 108 G----LPSGKFVWLTRQQFEGGLDEESNAAIAALGLP-LFVKPACEGSSVGISRV---ND 159
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L AL EM ++ E F+
Sbjct: 160 LHALPAAL-------------------EMAFKYDNDVLVEAFLSG--------------- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TV ++G ++PS+ +K + + E K+ + P
Sbjct: 186 ----------AEYTVAIVGD-----RILPSIEIKSASEFYDYEAKYISDDTQYVCPAE-- 228
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + +Q + AL G+ R+D + G ++E NT PGMT +++
Sbjct: 229 -LSAEREAELQQLVLAAWRALGCRGWGRVDVMTD-GEGRFQLLEANTSPGMTSHSLVPMA 286
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A +Q M Q +L+L
Sbjct: 287 A--KQAGMSFPQLVAHILEL 304
>gi|325578819|ref|ZP_08148866.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
33392]
gi|325159643|gb|EGC71775.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
33392]
Length = 316
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 119/295 (40%), Gaps = 72/295 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + G+ +
Sbjct: 71 VFNILHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKA---FGLPVADM 127
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT----LCVKPARDGCSTGVARLCCAEDLTVYVK 541
++ KE+ HEL + + L VKP+ +G S G+ + VK
Sbjct: 128 EIVTKENA---------HELNPQAVVEKLGLPLMVKPSLEGSSVGLTK----------VK 168
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A+E E+ + L F+ + +E L
Sbjct: 169 AVE------------------ELKSAVDYALKFDNTILIEEWLAGD-------------- 196
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV V+G ++P+V + G+ + K+ P S +
Sbjct: 197 -----ELTVPVLG-----GEVLPAVRIVPEGEFYDYDAKYISDNTQYFCPAGLSAEREQE 246
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
L K +R + + G+SRID + G ++EVNT PGMT ++ A
Sbjct: 247 LAKLVKR---AYDVVGCRGWSRIDVMTDA-QGNFRLVEVNTNPGMTSHSLFPKSA 297
>gi|332160414|ref|YP_004296991.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386311350|ref|YP_006007406.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418240058|ref|ZP_12866601.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433551454|ref|ZP_20507496.1| D-alanine--D-alanine ligase [Yersinia enterocolitica IP 10393]
gi|318607125|emb|CBY28623.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664644|gb|ADZ41288.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859328|emb|CBX69675.1| D-alanine--D-alanine ligase [Yersinia enterocolitica W22703]
gi|351780561|gb|EHB22631.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431787636|emb|CCO70536.1| D-alanine--D-alanine ligase [Yersinia enterocolitica IP 10393]
Length = 306
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 69/300 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A L
Sbjct: 109 ----LPISPYVALNRQQFETLSSEELAACVAKLGLP-LIVKPSHEGSSVGMSKVDQANQL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ E F ++L
Sbjct: 164 ---------------------------------HSALVEAFRHDTDVLI----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G + ++PS+ ++ G E K+ P
Sbjct: 180 ------EKWLSGPEFTVAILG-----NDVLPSIRIQAPGVFYDYEAKYLSDETQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S+E L++ + L A AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSSE-LEQQLAALSLQAYQALGCSGWGRVDVMQDSD-GCFYLLEVNTSPGMTSHSLV 283
>gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
Length = 314
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 122/303 (40%), Gaps = 64/303 (21%)
Query: 416 IKLAKENQAT-VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
++ A++ A VF+A+HGG GEDG LQ++LEA G+PYTG G ++CM + L
Sbjct: 47 VEAARDRGADLVFVALHGGWGEDGRLQAVLEAHGIPYTGSG---PESCMAAMDKELTRAV 103
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
D G+ V +ED +L S + AR+G + CC
Sbjct: 104 FLDRGLPVPPGKVYEREDA-------ALPDLESLM---------AREGGHLALKPCCCGS 147
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+ V L+ P +++ + K
Sbjct: 148 TVGVS--------------------------------LVHRP----EDLREARDLALKYD 171
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
DRL+ + E+TV V + G +L P++ ++ K+ G L P P
Sbjct: 172 DRLVAERFIPGRELTVAVFEEGGRPRAL-PAIEIRPHEGFYDYRNKYTSGATEYLCPAPL 230
Query: 655 SIMSTEAL-DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 713
EAL + E AL +SR+D F + GE ++EVNT PGMT T L+
Sbjct: 231 E----EALAARVGSLAEAAHRALGCRVYSRVD-FRLSEEGEPFLLEVNTAPGMT-GTSLV 284
Query: 714 HQA 716
+A
Sbjct: 285 PKA 287
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 95
G + +KP GS++GV++ + D L++A+ + L+ DDR+V E F+ G E T V
Sbjct: 134 EGGHLALKPCCCGSTVGVSLVHRPED-LREARDLALK-YDDRLVAERFIPG-RELTVAVF 190
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
+ G P ++++R + ++YR KY + Y P +
Sbjct: 191 EEGGRPRALP--------------AIEIRPHEGFYDYRNKYT-SGATEYLCPAPLEEALA 235
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+ A + LG ++R+D + +E G ++N GM
Sbjct: 236 ARVGSLAEAAHRALGCRVYSRVD-----------------FRLSEEGEPFLLEVNTAPGM 278
Query: 216 EQTSFLFQQASKVGFSHSNILRTII 240
TS + + + VG+S + I+
Sbjct: 279 TGTSLVPKAGAAVGWSFPQVTDRIV 303
>gi|407363838|ref|ZP_11110370.1| D-alanyl-alanine synthetase A [Pseudomonas mandelii JR-1]
Length = 364
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 109/471 (23%), Positives = 179/471 (38%), Gaps = 136/471 (28%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 337
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
S+ + P + L + E+ A+ P +A+ Q+V + + H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQEMLGH--- 98
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 508
S CMDK I+K + R + TP V + + E+ +K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGIAVTPFVTLTRASAARTGFAEVQAK 177
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
L L VKPA G S GV+++ D Y A+E L F
Sbjct: 178 LGL-PLFVKPANQGSSVGVSKVS---DEAEYTAAVELAL------GF------------- 214
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 628
DE + + N EI V+G ++ S + V
Sbjct: 215 ------------DEKVLIESAVNGR-------------EIECAVLGNEDAIASGCGEIVV 249
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
+ S + K+ + P +S+EA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDAQAAEVVVPAN--ISSEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
D+GEVLI E+N++PG T + ++ L + M + +++DL E+
Sbjct: 306 T-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVSRLIDLALEK 353
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 45/210 (21%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLD---- 96
VKP GSS+GV+ V D + + L G D++V++E + G E VL
Sbjct: 184 VKPANQGSSVGVS---KVSDEAEYTAAVELALGFDEKVLIESAVNG-REIECAVLGNEDA 239
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ SG C +V+ + ++Y KY+ Q P
Sbjct: 240 IASG--CGEIVV-----------------RSGFYSYDSKYIDAQAAEVVVPANISSEASE 280
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
IR A FQ LG AR+D + T+ G +L +IN + G
Sbjct: 281 RIRALAVEAFQVLGCSGLARVDVFL-----------------TDSGEVLINEINSLPGFT 323
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+ S + G ++S ++ +I A +
Sbjct: 324 RISMYPKLWQATGMTYSELVSRLIDLALEK 353
>gi|386823147|ref|ZP_10110302.1| D-alanine--D-alanine ligase [Serratia plymuthica PRI-2C]
gi|386379934|gb|EIJ20716.1| D-alanine--D-alanine ligase [Serratia plymuthica PRI-2C]
Length = 306
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 129/328 (39%), Gaps = 81/328 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK T + +
Sbjct: 49 QLKEHGFTKVFIALHGRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ + R+ K ++ L L VKP+R+G S G++++ +
Sbjct: 109 LPVAPYVALNRRQYAGAEKQSLIARVEAL-----GLPLIVKPSREGSSVGMSKVT---ER 160
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
T ALEE F D++L
Sbjct: 161 TALEAALEEG------------------------------FRHDDDVLV----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G ++PS+ ++ +G + K+ P
Sbjct: 180 ------EKWLSGPEYTVAMLGD-----QVLPSIRIQPAGVFYDYQAKYISDDTQYFCPSG 228
Query: 654 ASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+Q E+ A AL+ G+ R+D + D G ++EVNT PGMT
Sbjct: 229 LG---------AEQEAEMAALALRAYRGLDCSGWGRVDVMQDSD-GSFYLLEVNTSPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q + Q ++L+L
Sbjct: 279 SHSLVPMAA--RQSGLSFSQLVARILEL 304
>gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424]
gi|229463747|sp|B3R6V7.1|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus
taiwanensis LMG 19424]
Length = 327
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 63/121 (52%), Gaps = 14/121 (11%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNHL 475
+LA VFIA+HG GEDGT+Q LLE GVPYTG GV+AS MDK AT L + H
Sbjct: 61 ELAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTH- 119
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
G+ T + + + D+ L VKPAR+G S G+ ++ A+
Sbjct: 120 ---GLATPRFAMLHADTDFDAVVADL---------GLPLIVKPAREGSSIGLTKVTAADQ 167
Query: 536 L 536
+
Sbjct: 168 M 168
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 41/207 (19%)
Query: 40 VVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
++VKP R GSSIG VT A + + KA +D+ V+ E F++ G+E T V+
Sbjct: 146 LIVKPAREGSSIGLTKVTAADQMRAAFDKAA-----ALDNDVIAETFVD-GAELTCPVVG 199
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G + PV + + +A ++Y+ KY T Y P V
Sbjct: 200 EGDTAEALPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDAEVER 244
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
++ A ++ LG +AR D V ++ GT ++N GM
Sbjct: 245 QVQALAVQAYRVLGCRGWARAD---------VMLRAD--------GTPFLLEMNTSPGMT 287
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHA 243
S + A VG S+ + + ++ A
Sbjct: 288 GHSLVPMAARAVGISYEDFVLQVLAAA 314
>gi|338212616|ref|YP_004656671.1| D-alanine--D-alanine ligase [Runella slithyformis DSM 19594]
gi|336306437|gb|AEI49539.1| D-alanine--D-alanine ligase [Runella slithyformis DSM 19594]
Length = 556
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 138/315 (43%), Gaps = 35/315 (11%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FI +HG EDG +Q L+E +PY GPG++ S +DK+ L +A
Sbjct: 113 FIILHGPDCEDGAIQGLMEWHKMPYMGPGLLGSAVSIDKI---LQNEQIARANGQEKKMA 169
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
V R E+ I + E + + + VK G S GVA + + + KA+ +C
Sbjct: 170 VVRWEEWHGADISQKFEEAKAAVGL-PIVVKAPHQGSSIGVA-IVKEDSADAFAKAVNQC 227
Query: 547 LLRI-------------PPNSFSRAHGMIEMPNPPPEIL------IFEPFVETDEILFSS 587
+ ++F++ G ++ P ++ I+ P D++ S
Sbjct: 228 FFSLEIRADDWRSWSEAEKHTFAQRIGNLDESIGYPVVIQETQETIYHPLDLLDKLDASL 287
Query: 588 QST----NKNA-DRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVK-ESGDILSLEEK 640
S+ + NA D+++ + E + GVI G++ +L P+ K + + K
Sbjct: 288 HSSFTLLSINAEDQVLLEEFMTGQEFSCGVIQDNDGTVIALPPTEIAKMDENQTFDFKTK 347
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
++ P ++ + + K + I L+ L + +RID F+ D G VL+ +
Sbjct: 348 YKLNVTRKFIPVRTALENNQ---KIQYNIALVFEKLGMNAVARIDGFLTPD-GRVLLHDP 403
Query: 701 NTVPGMTPSTVLIHQ 715
NT+PGM+P++++ Q
Sbjct: 404 NTLPGMSPTSLIFKQ 418
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 32/167 (19%)
Query: 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEV-ELQFQGSVDVREKDAIFNYR 133
+D+V++E F+ G EF+ V+ G + L PTE+ ++ + D + K + N
Sbjct: 299 EDQVLLEEFMTG-QEFSCGVIQDNDG---TVIALPPTEIAKMDENQTFDFKTKYKL-NVT 353
Query: 134 RKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSE 193
RK++P + + I+ +L+F++LG+ ARIDG+ P
Sbjct: 354 RKFIPVRTALENN---------QKIQYNIALVFEKLGMNAVARIDGFLTPD--------- 395
Query: 194 TKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
G +L D N + GM TS +F+Q +++G ++ + +I
Sbjct: 396 --------GRVLLHDPNTLPGMSPTSLIFKQMAEIGLDVTHAITYLI 434
>gi|419801737|ref|ZP_14326951.1| D-ala D-ala ligase N-terminal-like domain protein [Haemophilus
parainfluenzae HK262]
gi|419845856|ref|ZP_14369119.1| D-ala D-ala ligase N-terminal-like domain protein [Haemophilus
parainfluenzae HK2019]
gi|385193116|gb|EIF40497.1| D-ala D-ala ligase N-terminal-like domain protein [Haemophilus
parainfluenzae HK262]
gi|386414894|gb|EIJ29436.1| D-ala D-ala ligase N-terminal-like domain protein [Haemophilus
parainfluenzae HK2019]
Length = 306
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 119/295 (40%), Gaps = 72/295 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + G+ +
Sbjct: 61 VFNILHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKA---FGLPVADM 117
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT----LCVKPARDGCSTGVARLCCAEDLTVYVK 541
++ KE+ HEL + + L VKP+ +G S G+ + VK
Sbjct: 118 EIVTKENA---------HELNPQAVVEKLGLPLMVKPSLEGSSVGLTK----------VK 158
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A+E E+ + L F+ + +E L
Sbjct: 159 AVE------------------ELKSAVDYALKFDNTILIEEWLAGD-------------- 186
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV V+G ++P+V + G+ + K+ P S +
Sbjct: 187 -----ELTVPVLG-----GEVLPAVRIVPEGEFYDYDAKYISDNTQYFCPAGLSAEREQE 236
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
L K +R + + G+SRID + G ++EVNT PGMT ++ A
Sbjct: 237 LAKLVKR---AYDVVGCRGWSRIDVMTDA-QGNFRLVEVNTNPGMTSHSLFPKSA 287
>gi|313885390|ref|ZP_07819140.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619120|gb|EFR30559.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
ACS-139-V-Col8]
Length = 361
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 118/295 (40%), Gaps = 60/295 (20%)
Query: 415 WIKLAK--ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 472
WI+ + E+ A VF +HG GEDGT+Q LE +PY G GV AS T MDK+ +
Sbjct: 84 WIQPGQIAEDDAVVFPVLHGPNGEDGTIQGFLEVLNLPYVGAGVTASATGMDKIISKQLF 143
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+ V + D K D L+ W + VKPA G S GV+R+
Sbjct: 144 DQAGLPQVPYVYFD---KRDWLQDQ--SRWIQKCEGNLLYPFFVKPANMGSSVGVSRVEN 198
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
+++L +KA++ L E D + Q +
Sbjct: 199 SQEL---IKAVDVAL-------------------------------EFDRRIVVEQGISA 224
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
N + GN +I V+G+ + +S D +EK+ T + + P
Sbjct: 225 NECEVAVLGND---DIHASVVGR------------LVKSSDFYDYDEKYINNT-VEMEIP 268
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + DK K A+ G +R D FV N ++ I EVNT+PG T
Sbjct: 269 --ANLPEAVSDKIKDYALKAYRAVDGTGLTRADFFVTA-NYDIYINEVNTMPGFT 320
>gi|60391958|gb|AAX19284.1| D-alanine:D-lactate ligase [Paenibacillus thiaminolyticus]
Length = 343
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 112/283 (39%), Gaps = 66/283 (23%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-SLALNH-LADLGVLTIN 484
F +H GEDG++Q L E G+PY G + +S CMDK T ++A N +A IN
Sbjct: 95 FSGMHSKSGEDGSIQGLFELSGIPYVGCDIQSSAICMDKSLTYTIAKNAGIAIPEFWVIN 154
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD + D P+ VKPAR G S GV ++ A++L +++
Sbjct: 155 KDDKPAADTFTYPVF----------------VKPARSGSSYGVKKVNVADELDAAIESAR 198
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+ D + Q+ GNS
Sbjct: 199 ----------------------------------QYDSKILIEQAVLGCEVGCAVLGNSS 224
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E+ VG + + H + I E +G +T P + +S E +
Sbjct: 225 --ELIVGEVDQIRLQHGIF---------RIHQEAEPEKGSENAVITIP--ADLSAEERGR 271
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
++ + I AL G SR+D F+ DNG +++ EVNT+PG T
Sbjct: 272 IQETAKKIYKALGCRGLSRVDMFLQ-DNGRIVLNEVNTLPGFT 313
>gi|377556559|ref|ZP_09786259.1| D-alanine--D-alanine ligase [Lactobacillus gastricus PS3]
gi|376168263|gb|EHS87051.1| D-alanine--D-alanine ligase [Lactobacillus gastricus PS3]
Length = 377
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 126/318 (39%), Gaps = 67/318 (21%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
+ +HG +GEDGT+Q L PY G G+ AS DK T LN
Sbjct: 99 YPVIHGNLGEDGTVQGLFRLLKKPYVGSGIAASAMAFDKELTKRILNQAG---------- 148
Query: 487 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+R + +L TP W ++ ++L + VKPA+ G S G+ ++ AE+ Y AL
Sbjct: 149 IRNTKYILVTPDNQASYGWDQVKAEL-GDLVFVKPAKQGSSVGIHKVRNAEE---YQAAL 204
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ L +IE P P
Sbjct: 205 TDALTY-------DYKVLIEEAVPNPR--------------------------------- 224
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
EI + ++G + S + + + E D KF +G+ P ++ E L
Sbjct: 225 ---EIEISILGNDQPIASKLGGLRIPEGDDFYDYNNKFVDASGVVFDLP---VIVAEPLQ 278
Query: 664 KCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
K ++ L A AL+++G R+D V+ +N + E NT+PG T + ++ +
Sbjct: 279 KEITQMALDAYQALEMKGMCRMDFLVD-ENDVPYLSEPNTLPGFT--NISLYPQMWNVSG 335
Query: 723 MYPHQFFRKVLDLGSERF 740
+ + ++++LG E F
Sbjct: 336 ISYSELIDRLIELGIEEF 353
>gi|375288501|ref|YP_005123042.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
3/99-5]
gi|387136444|ref|YP_005692424.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|348606889|gb|AEP70162.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575790|gb|AEX39393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
3/99-5]
Length = 360
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 126/311 (40%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 108 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 163
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V + D + E ++ + VKPAR G S G++R+ +D +
Sbjct: 164 EVILRGD-------ETLTESDKQMLGLPVFVKPARGGSSIGISRVIEWDDFDAAL----- 211
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +R H +++ + +
Sbjct: 212 --------TLAREHDT----------------------------------KVIVEAEIKG 229
Query: 606 VEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQG------GTGINLTPPPASIMS 658
VE+ GV+ + GS+ + +P+ + D+ EE F G + T P
Sbjct: 230 VEVECGVLERADGSLIASVPA----QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQ 285
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
T AL Q + L A AL G SR+D FV D G VL EVNT+PG TP +
Sbjct: 286 TIAL---IQSLSLEAFQALNCRGLSRVDFFVT-DQGPVL-NEVNTMPGFTPIS------- 333
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 334 -----MYPQVF 339
>gi|333374926|ref|ZP_08466756.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330]
gi|332974211|gb|EGK11144.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330]
Length = 307
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 116/314 (36%), Gaps = 75/314 (23%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + E KL K+ F +HG GEDGT+Q LEA GVPYTG GV+AS M
Sbjct: 38 DAHPFDPAQTELAKLKKQGFDIAFNILHGTYGEDGTVQGALEALGVPYTGCGVLASALGM 97
Query: 464 DKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK L + L VL N E L P L +KPA
Sbjct: 98 DKYRCKLIWSALGLPIPPFVVLHDNSHFAEVEQQLGLP----------------LFIKPA 141
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
+G S GV ++ A DL L + L HG+I
Sbjct: 142 AEGSSVGVVKVKQAGDLATEYAKLRDMGL----------HGVIL---------------- 175
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
A++ M G E T GV + +P++ + + E
Sbjct: 176 --------------AEQFMSGG-----EYTCGVFNR-----QALPTIRIIPQTEFYDYEA 211
Query: 640 KFQGGTGINLTPPPASIMSTEALDK-CKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ + L P + + +Q E I L RID F+ G + I+
Sbjct: 212 KYLRDDTVYLCPSDLNADDEARMQHLAQQAFEAIGGGNSL---GRID-FLKDSVGCLYIL 267
Query: 699 EVNTVPGMTPSTVL 712
E NT+PGMT +++
Sbjct: 268 EANTLPGMTSHSLI 281
>gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
gi|229485959|sp|B2GFL1.1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
Length = 383
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 109/287 (37%), Gaps = 60/287 (20%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTI 483
VF +HG GEDGTLQ +LE +PY G GV AS MDK LA ++G T+
Sbjct: 120 AVFPLLHGPFGEDGTLQGMLELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYTV 179
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
D + D L E ++L VKPAR G S G+ R+ L +
Sbjct: 180 VHDRTWRTDPLGV------REAVAELGFPVF-VKPARAGSSFGITRVDEPSQLDAAIATA 232
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E L+ L+ E ++
Sbjct: 233 REHDLK----------------------LVVEAGIDGR---------------------- 248
Query: 604 RWVEITVGVIGKCGS--MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
EI V+G G+ + +P + E K+ G L+ P + +
Sbjct: 249 ---EIECAVLGGHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCP--ARLPEHV 303
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+D ++ +A+ EG SR D FV D VLI E+NT+PG TP
Sbjct: 304 IDTLRRDAVRAFHAVDGEGLSRCDFFVTADE-RVLINEINTMPGFTP 349
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 45/214 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP RAGSS G+T +D + I D ++VVE ++ G E VL
Sbjct: 203 VFVKPARAGSSFGIT----RVDEPSQLDAAIATAREHDLKLVVEAGID-GREIECAVLG- 256
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G G D LP E+E+ A++++ KY+ + P R P VI++
Sbjct: 257 GHGTD-EARASLPGEIEVHGH---------ALYDFEAKYVESDGATLSCPARLPEHVIDT 306
Query: 158 IREGASLLF-----QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI 212
+R A F + L CDF F +++ + +L +IN +
Sbjct: 307 LRRDAVRAFHAVDGEGLSRCDF--------------FVTADER--------VLINEINTM 344
Query: 213 SGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
G S + + G +S ++ +I A R
Sbjct: 345 PGFTPISMYPRMWAASGIDYSALIDELITLALER 378
>gi|398923514|ref|ZP_10660734.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM48]
gi|398175130|gb|EJM62897.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM48]
Length = 364
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 129/323 (39%), Gaps = 80/323 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F VHG +GEDG LQ LL +P+ G V+ S CMDK I+K
Sbjct: 102 IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDK----------------DISK 145
Query: 486 DVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ R L TP V + + E+ S+L L VKPA G S GV+++ D
Sbjct: 146 RLLRDAGLAVTPFVTLTRATAARTGFAEVQSRLGLP-LFVKPANQGSSVGVSKVT---DE 201
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
Y A+E L SF ++L S + +
Sbjct: 202 AEYTSAVELAL------SFD------------------------TKVLIESAVSGR---- 227
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
EI V+G ++ S + V+ S + K+ T + P
Sbjct: 228 ----------EIECAVLGNEEAVASGCGEIVVRSG--FYSYDSKYIDDTAAEVVVPAN-- 273
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+S EA ++ + L G +R+D F+ D+GEVLI E+N++PG T + ++
Sbjct: 274 ISVEASERIRALAVEAFQVLGCAGLARVDVFLT-DSGEVLINEINSLPGFT--RISMYPK 330
Query: 717 LSEQPPMYPHQFFRKVLDLGSER 739
L + M + ++++L E+
Sbjct: 331 LWQATGMTYSELVTRLIELALEK 353
>gi|300690343|ref|YP_003751338.1| D-alanine--D-alanine ligase [Ralstonia solanacearum PSI07]
gi|299077403|emb|CBJ50028.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
solanacearum PSI07]
gi|344169153|emb|CCA81476.1| D-alanine-D-alanine ligase B, affects cell division [blood disease
bacterium R229]
Length = 331
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 114/295 (38%), Gaps = 73/295 (24%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH-- 474
LA + V I++HG GEDGT+Q LLE G+PYTG GV+AS MDK AT L H
Sbjct: 65 LATQGFHRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGL 124
Query: 475 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
D +L D + D L P++ VKPAR+G S G+ ++
Sbjct: 125 PTPDFVMLHAGADWQAVADRLGLPLI----------------VKPAREGSSIGLTKVTSV 168
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
+L P ++ +A + ++ E F+E D
Sbjct: 169 AEL---------------PAAYEKAARL-------DRDVMAEQFIEGD------------ 194
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP- 652
E+T VIG+ S +L V + + F T P
Sbjct: 195 -------------ELTCAVIGEGESATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPI 241
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
PA + + + + + L G+ R D + + ++E+NT PGMT
Sbjct: 242 PADVAA-----RVQALVVQAYRGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMT 291
>gi|218289167|ref|ZP_03493403.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
gi|218240750|gb|EED07929.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
Length = 383
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 182/471 (38%), Gaps = 122/471 (25%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG + E +VSL S +V + A + + T + S D +
Sbjct: 8 VGVIFGGKSGEHEVSLQSAKSV---MDALDPLHYTTIPIGISKDGRWHV----------G 54
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAA-FTSHLRNQVVNDLVEGLKKHSWFTGF 400
+ W + L A A P + A T+ + +N ++GL
Sbjct: 55 KGAW-------------KALEAKQPATLPSKGAQNTASPSKRFINPEIQGLSP------- 94
Query: 401 DIADELPMRHSINEWIKLAKENQA-TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
+ ++ S +W+ A N+ VF +HG GEDGT+Q LLE G+PY G GV+AS
Sbjct: 95 -----VEVKRS-PDWLPPALVNEIDVVFPVLHGTFGEDGTIQGLLEMVGIPYVGSGVLAS 148
Query: 460 KTCMDKVA-----TSLALNHLADLGVLTIN------KDVRRKEDLLKTPIVDIWHELTSK 508
MDK+A +++ + +G + + VR E+ L P
Sbjct: 149 ALGMDKIAMKQIFSAVGIPQARWVGFTRASWTQDDGRIVREIEEQLGYP----------- 197
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
C VKPA G S G+++ +L V+++ L S+ R
Sbjct: 198 --C---FVKPANLGSSVGISKARNQREL---VESVHLAL------SYDRR---------- 233
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 628
+I E ++ E I +G++G + S+ +
Sbjct: 234 ---VIVEEAIDARE-------------------------IEIGILGNDDPIASVAGEIVP 265
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
K + E K+Q G P S +A++ R A+ G +R+D FV
Sbjct: 266 KR--EFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIR---AFQAIDGSGLARVDFFV 320
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
G VL+ E+NT+PG T + ++ L E + + ++++L ER
Sbjct: 321 ERGTGRVLVNEINTMPGFTRFS--MYPKLWEASGLAYDKLLDRLIELALER 369
>gi|440229986|ref|YP_007343779.1| D-alanine--D-alanine ligase [Serratia marcescens FGI94]
gi|440051691|gb|AGB81594.1| D-alanine--D-alanine ligase [Serratia marcescens FGI94]
Length = 368
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 126/319 (39%), Gaps = 72/319 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV----- 480
VF VHG +GEDG+LQ LL +P+ G GV+ S MDK T L D G+
Sbjct: 102 VFPIVHGTLGEDGSLQGLLRMANIPFVGAGVLGSAVSMDKDVTKRLLR---DAGLEVAPF 158
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+T+ + R + + +L+++L L +KPA G S GV+R+
Sbjct: 159 VTLTRSNRAQHS---------FEQLSAQL-GSPLFIKPANQGSSVGVSRVS--------- 199
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
P + +A + F ++L S +
Sbjct: 200 ----------DPAGYEQAVAL--------------AFSFDHKVLVESAIVGR-------- 227
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G SL + + S + S + K+ G + P A +S +
Sbjct: 228 ------EIECAVLGNDQPQASLCGEIVL--SDEFYSYDTKYINEQGAQVVVPAA--ISEQ 277
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
A DK + AL G +R+D F+ D V++ E+NT+PG T + ++ L
Sbjct: 278 ASDKVRDVALRAFRALDCLGMARVDVFLTEDE-RVIVNEINTLPGFT--NISMYPKLWAA 334
Query: 721 PPMYPHQFFRKVLDLGSER 739
M Q +++L ER
Sbjct: 335 SGMSYSQLITTLIELALER 353
>gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
Length = 375
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 123/294 (41%), Gaps = 60/294 (20%)
Query: 416 IKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
+ L++++ VF + HG +GEDGT+Q LL PY G GV+ S DK T L
Sbjct: 88 LNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILK- 146
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
LA GV T R E L + ++ S K L VKPA G S G+ ++ ++
Sbjct: 147 LA--GVATT-----RYELLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGIHKVETSD 199
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
D Y +A+ + R + + E +E E
Sbjct: 200 D---YDEAIRDAF---------RYDNKV----------LVEEAIEGPE------------ 225
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
E+ + V+G + S + S+ V + + KF + + P
Sbjct: 226 ------------ELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVP-- 271
Query: 655 SIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ +EAL K ++ L + AL L+G +RID V+ D+ E + EVNT+PG T
Sbjct: 272 -VDISEALSKELTKMALDSYRALGLKGMARIDFLVSQDS-EPYVSEVNTLPGFT 323
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 16/142 (11%)
Query: 38 GKVV-VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
GK++ VKP GSS+G+ D + + D++V+VE +EG E VL
Sbjct: 176 GKILFVKPANQGSSVGIHKVETSDDYDEAIRDAFR--YDNKVLVEEAIEGPEELEISVLG 233
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ HP+ ++V GS+ V DA + Y K++ QV + P +
Sbjct: 234 -----NHHPIA---SKV-----GSIKVPADDAFYTYDNKFVDASQVKFDVPVDISEALSK 280
Query: 157 SIREGASLLFQRLGLCDFARID 178
+ + A ++ LGL ARID
Sbjct: 281 ELTKMALDSYRALGLKGMARID 302
>gi|443707216|gb|ELU02921.1| hypothetical protein CAPTEDRAFT_100241, partial [Capitella teleta]
Length = 253
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 114/292 (39%), Gaps = 80/292 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVL 481
FIA+HG GEDG +Q LLE G+PY+G GVMAS MDK L + + ++
Sbjct: 12 AFIALHGRGGEDGAMQGLLETMGIPYSGSGVMASALAMDKYRCKLLWQSIGLPTPEFALV 71
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ ++ E LL VKP+ +G S GVAR+ EDL
Sbjct: 72 MGSDNLGHAESLLPA------------------FVKPSMEGSSVGVARVDRREDLEA--- 110
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+ RA E P ++ E F++
Sbjct: 111 ------------ACERAG---EHKGP----VLVEAFIDGP-------------------- 131
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E TVG++ +P + ++ G+ E K+ P + + +
Sbjct: 132 -----EFTVGILND-----QALPVIRIEAEGEFYDYEAKYLSDNTRYSIPCGLTSIKEQE 181
Query: 662 LDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
L Q + L A L G+ R+D F+ G ++EVNT+PGMT +++
Sbjct: 182 L----QAVALTAFETLGCSGWGRVD-FMQDQQGRFWLLEVNTIPGMTDHSLM 228
>gi|269218666|ref|ZP_06162520.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269211777|gb|EEZ78117.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 370
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 108/282 (38%), Gaps = 55/282 (19%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F +HG GEDGT+Q LE GVPY G GV AS MDK + L + +
Sbjct: 108 FPLLHGPFGEDGTIQGFLEMAGVPYVGCGVFASAAGMDKHFMKVVLESAG----IAVAPY 163
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
V +T I E+ KL VKPAR G S G+ ++
Sbjct: 164 VLVAPRRWRTEKGQILAEIAQKLTFPVF-VKPARAGSSLGIGKV---------------- 206
Query: 547 LLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWV 606
+ P RA + +P +I E V R V
Sbjct: 207 ---LEPGGLERAIAAAQKVDPK---VIVEQGV-----------------------KGREV 237
Query: 607 EITV-GVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E V G G S++ + V + D E K+ G ++ P EA +
Sbjct: 238 ECAVLGGRGDAAPRTSILGEI-VMDGTDWYDFETKYIQTEGFHMAVPAPVEADVEA--EA 294
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
++ + A EG +R+D F+ D+GE+L+ E NT+PG T
Sbjct: 295 RRIAARVFEAFDCEGMTRVDFFLT-DDGEILVNEHNTIPGFT 335
>gi|440760739|ref|ZP_20939842.1| D-alanine--D-alanine ligase [Pantoea agglomerans 299R]
gi|436425492|gb|ELP23226.1| D-alanine--D-alanine ligase [Pantoea agglomerans 299R]
Length = 306
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 127/320 (39%), Gaps = 63/320 (19%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ FIA+HG GEDGT+Q++LE +PYTG GVMAS MDK+ T L
Sbjct: 48 LTLKEQGFTKAFIALHGRGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 107
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
L K V + + + + + L L VKPA +G S G++R+ D
Sbjct: 108 G----LPSGKFVWLTRQQFEGGLDEESNAAIAALGLP-LFVKPACEGSSVGISRV---ND 159
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L AL EM ++ E F+
Sbjct: 160 LHALPAAL-------------------EMAFKYDNDVLVEAFLSG--------------- 185
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E TV ++G ++PS+ +K + + E K+ + P
Sbjct: 186 ----------AEYTVAIVGD-----RILPSIEIKSASEFYDYEAKYISDDTQYVCPAE-- 228
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S E + +Q + AL G+ R+D + G ++E NT PGMT +++
Sbjct: 229 -LSAEREAELQQLVLAAWRALGCRGWGRVDVMTD-GEGRFQLLEANTSPGMTSHSLVPMA 286
Query: 716 ALSEQPPMYPHQFFRKVLDL 735
A +Q M Q +L+L
Sbjct: 287 A--KQAGMSFPQLVAHILEL 304
>gi|343407484|gb|AEM23748.1| VanA ligase [Enterococcus faecalis]
Length = 329
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 72/286 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 87 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 146
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 147 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 179
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 180 ------------------------------------DELDYAIESARQYDSKILIEXAVS 203
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTEA 661
E+ V+G ++ ++ ++ I + ++ + G +T P + +S E
Sbjct: 204 GCEVGCAVLGNSAAL-AVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAEE 260
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 261 RGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 305
>gi|343407478|gb|AEM23745.1| VanA ligase [Enterococcus faecium]
Length = 316
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 72/286 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 87 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 146
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 147 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 179
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 180 ------------------------------------DELDYAIESARQYDSKILIEQAVS 203
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTEA 661
E+ V+G ++ ++ ++ I + ++ + G +T P + +S E
Sbjct: 204 GCEVGCAVLGNSAAL-AVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAEE 260
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 261 RGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 305
>gi|226356915|ref|YP_002786655.1| D-alanyl-alanine synthetase A [Deinococcus deserti VCD115]
gi|226318905|gb|ACO46901.1| putative D-alanine--D-alanine ligase [Deinococcus deserti VCD115]
Length = 339
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 68/310 (21%)
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
+ E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T LA
Sbjct: 76 SAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK---QVLASA 132
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
G+ + + + + P ++ ++L L VKPA G S G++++ +DL
Sbjct: 133 GIAQVEWRLALRREWRSQP--EVVTARATELGFP-LFVKPANLGSSVGISKVSHTDDLQA 189
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
AL+ S R ++ + +++K
Sbjct: 190 ---ALDLAF------SLDR------------------------RVILEAMTSHKPR---- 212
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
E+ VG++G + S P + + E K+ G P + M
Sbjct: 213 --------EVEVGILGNDAPVAS--PVGELSFDSEFYDYETKYTEGRAQMHIP---ARMP 259
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ ++ ++ AL G +R+D F + GE+ + EVNT+PG T ++
Sbjct: 260 RDMSERVREMALQAFRALDCAGLARVDFFYVEETGELFLNEVNTMPGFTTTS-------- 311
Query: 719 EQPPMYPHQF 728
MYP F
Sbjct: 312 ----MYPKLF 317
>gi|365174674|ref|ZP_09362114.1| D-alanine-D-alanine ligase [Synergistes sp. 3_1_syn1]
gi|363614471|gb|EHL65965.1| D-alanine-D-alanine ligase [Synergistes sp. 3_1_syn1]
Length = 314
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 132/320 (41%), Gaps = 61/320 (19%)
Query: 400 FDIADELPMRHSINEWIKLAKENQAT-VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
F EL SI+E++K +A VFIA+HGG GEDG +Q++LEA G+PYTG G A
Sbjct: 31 FGYEAELCDITSISEFVKNWPGYKADGVFIALHGGWGEDGRIQAVLEAFGIPYTGSGPEA 90
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
MDK A L A+ GV + ++D K + + + K + VKP
Sbjct: 91 CMLSMDKAAAKLL---FANAGVPVPRGFIATRDD-DKRKLAGEYIQNHGK-----IIVKP 141
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
G + GV + ++ Y ALE + S ++A + E F+
Sbjct: 142 NGGGSTVGVTIV---SEIAEYGAALE-----LAWQSEAKA--------------LVEEFI 179
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+ + E+TV V+ +P++ +K +
Sbjct: 180 DGE-------------------------EVTVPVMETADGKALALPAIHIKPKSGFYDYK 214
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ G + P S +S E + + AL +SR+D F G + +
Sbjct: 215 NKYTSGCTEYICP---SDLSEEINSRLADAAVIAYRALGCRSYSRVD-FRVTPEGALYAL 270
Query: 699 EVNTVPGMTPSTVLIHQALS 718
EVNT PGMT ++++ A S
Sbjct: 271 EVNTAPGMTATSLVPKSAKS 290
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 55/242 (22%)
Query: 7 ITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA-----YGVID 61
+ VP + + ++ +L+ ++ N GK++VKP GS++GVT+ YG
Sbjct: 109 VPVPRGFIATRDDDKRKLAGEYIQNH-----GKIIVKPNGGGSTVGVTIVSEIAEYGAAL 163
Query: 62 SL---KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ 118
L +AK ++ E ID G E T V++ G + LP
Sbjct: 164 ELAWQSEAKALVEEFID-----------GEEVTVPVMETADG----KALALP-------- 200
Query: 119 GSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARID 178
++ ++ K ++Y+ KY + Y P + + + + A + ++ LG ++R+D
Sbjct: 201 -AIHIKPKSGFYDYKNKYT-SGCTEYICPSDLSEEINSRLADAAVIAYRALGCRSYSRVD 258
Query: 179 GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238
P G + ++N GM TS + + A GFS L
Sbjct: 259 FRVTPE-----------------GALYALEVNTAPGMTATSLVPKSAKSSGFSFGEFLDE 301
Query: 239 II 240
++
Sbjct: 302 VV 303
>gi|375107696|ref|ZP_09753957.1| D-alanine--D-alanine ligase [Burkholderiales bacterium JOSHI_001]
gi|374668427|gb|EHR73212.1| D-alanine--D-alanine ligase [Burkholderiales bacterium JOSHI_001]
Length = 326
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 120/305 (39%), Gaps = 89/305 (29%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT-------SL 470
L ++ A VFIA+HG GEDGT+Q LE G+PYTG GVMAS +DKV T L
Sbjct: 57 LKEQGFARVFIALHGRHGEDGTVQGALELLGIPYTGSGVMASAIALDKVMTKRVWMAEGL 116
Query: 471 ALNHLADLGVLTINKD-VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529
LG ++ VR D L P++ VKP R+G S GV +
Sbjct: 117 PTPRFVRLGPSEQQRERVRGVPDELGLPLI----------------VKPPREGSSIGVTK 160
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
+ + V A + F P++L E F+E D
Sbjct: 161 VVGYSQMQDAVLAAAK---------FD------------PDVLC-EEFIEGD-------- 190
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL------MPSVTVKESGDILSLEEKFQG 643
E+T V+G + +L P + + ++Q
Sbjct: 191 -----------------ELTCPVLGDGATARALPVVKIVAPEGAYDYQNKYFTDDVRYQC 233
Query: 644 GTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
+G+ PP AL+ QRI L + AL G+ R D + + + ++E+NT
Sbjct: 234 PSGL---PP--------ALEAEVQRIVLASYRALGCRGWGRADLMLRARDQQPFLLEMNT 282
Query: 703 VPGMT 707
PGMT
Sbjct: 283 SPGMT 287
Score = 40.8 bits (94), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GSSIGVT G S + + D V+ E F+E G E T VL G+
Sbjct: 145 LIVKPPREGSSIGVTKVVGY--SQMQDAVLAAAKFDPDVLCEEFIE-GDELTCPVLGDGA 201
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV V + + ++Y+ KY T V Y P P + ++
Sbjct: 202 TARALPV--------------VKIVAPEGAYDYQNKYF-TDDVRYQCPSGLPPALEAEVQ 246
Query: 160 EGASLLFQRLGLCDFARID 178
++ LG + R D
Sbjct: 247 RIVLASYRALGCRGWGRAD 265
>gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
Length = 367
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 129/317 (40%), Gaps = 66/317 (20%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLT 482
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L LA +T
Sbjct: 101 VIFPIVHGTLGEDGSLQGLLRMANLPFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R K D + +L+ +L L VKPA G S GV+++ +D + A
Sbjct: 161 LTRSNRAKFD---------FEQLSERLGL-PLFVKPANQGSSVGVSKV---QDRAGFEAA 207
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
+ +FS H ++L S +
Sbjct: 208 VAL--------AFSFDH----------------------KVLVESAIVGR---------- 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G SL + + ++ S + K+ G + P A + E
Sbjct: 228 ----EIECAVLGNDEPQASLCGEIVLSDA--FYSYDTKYINEQGAQVIVPAA--IEPEVS 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
DK + AL+ G +R+D F+ DN V+I E+NT+PG T + ++ L
Sbjct: 280 DKIRDVALKAFRALECFGLARVDVFLTPDN-NVVINEINTLPGFT--NISMYPKLWAASG 336
Query: 723 MYPHQFFRKVLDLGSER 739
+ Q ++++L ER
Sbjct: 337 VSYSQLITRLIELAMER 353
>gi|398882377|ref|ZP_10637345.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM60]
gi|398198919|gb|EJM85869.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM60]
Length = 364
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 180/471 (38%), Gaps = 136/471 (28%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 337
V +IFGG ++E +VSL S N+ + A + + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRLRFDPVLI--------GIDKQGHWHLNDP 54
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
S+ + P + L + E+ A+ P + R Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKT------RQQLVETSSQELLGH--- 98
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 508
S CMDK I+K + R L TP V + + E+ K
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRATAKRTGFAEVRGK 177
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
L L VKPA G S GV+++ D Y A+E L G E
Sbjct: 178 LGL-PLFVKPANQGSSVGVSKV---NDEAEYTAAIELAL------------GFDE----- 216
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 628
++L S + + EI V+G ++ S + V
Sbjct: 217 -------------KVLVESAVSGR--------------EIECAVLGNEDAIASGCGEIVV 249
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688
+ S + K+ + P + +STEA ++ + L G +R+D F+
Sbjct: 250 RSG--FYSYDSKYIDAQAAQVVVP--ADISTEASERIRALAVEAFQVLGCSGLARVDVFL 305
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
D+ EVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 306 T-DSDEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVSRLIELALEK 353
>gi|300858333|ref|YP_003783316.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
FRC41]
gi|383314091|ref|YP_005374946.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
P54B96]
gi|384504510|ref|YP_005681180.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
1002]
gi|384506603|ref|YP_005683272.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
C231]
gi|384508691|ref|YP_005685359.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
I19]
gi|384510782|ref|YP_005690360.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
PAT10]
gi|385807381|ref|YP_005843778.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
267]
gi|300685787|gb|ADK28709.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
FRC41]
gi|302206051|gb|ADL10393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
C231]
gi|302330602|gb|ADL20796.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
1002]
gi|308276287|gb|ADO26186.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
I19]
gi|341824721|gb|AEK92242.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
PAT10]
gi|380869592|gb|AFF22066.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
P54B96]
gi|383804774|gb|AFH51853.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
267]
Length = 363
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 126/311 (40%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 111 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 166
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V + D + E ++ + VKPAR G S G++R+ +D +
Sbjct: 167 EVILRGD-------ETLTESDKQMLGLPVFVKPARGGSSIGISRVIEWDDFDAAL----- 214
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +R H +++ + +
Sbjct: 215 --------TLAREHDT----------------------------------KVIVEAEIKG 232
Query: 606 VEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQG------GTGINLTPPPASIMS 658
VE+ GV+ + GS+ + +P+ + D+ EE F G + T P
Sbjct: 233 VEVECGVLERADGSLIASVPA----QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQ 288
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
T AL Q + L A AL G SR+D FV D G VL EVNT+PG TP +
Sbjct: 289 TIAL---IQSLSLEAFQALNCRGLSRVDFFVT-DQGPVL-NEVNTMPGFTPIS------- 336
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 337 -----MYPQVF 342
>gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804]
gi|190359114|sp|A9I4V9.1|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii]
Length = 326
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 119/303 (39%), Gaps = 78/303 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 474
+LA VFIA+HG GEDGTLQ LE G+PYTG G MAS MDK+ T + L H
Sbjct: 62 ELAAAGFDRVFIALHGRYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHG 121
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
VL ++R D L P++ +KP +G + G+ ++
Sbjct: 122 LRTPAFEVLDAQAELRTVPDRLGLPLI----------------LKPPHEGSTVGITKVAG 165
Query: 533 AEDLTV-YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
D+ Y +A + F+ DE+L
Sbjct: 166 YSDMKEGYAQAAK-----------------------------FD-----DEVLAEQFIAG 191
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+ E+TV V+G + H+L P + + G E K+ P
Sbjct: 192 R--------------ELTVAVLGTGAAAHAL-PVIEIVAPGGNYDYEHKYFSDETQYFCP 236
Query: 652 P--PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P ++ + E D + AL G+ RID ++ DN ++E NT PGMT
Sbjct: 237 ADLPDAV-AAEVADLAVRAY----RALGCAGWGRIDFMLDADN-RPWLLEANTSPGMTSH 290
Query: 710 TVL 712
+++
Sbjct: 291 SLV 293
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 46/226 (20%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+++KP GS++G+T G D +K+ + DD V+ E F+ G E T VL G+
Sbjct: 147 LILKPPHEGSTVGITKVAGYSD-MKEGYAQAAK-FDDEVLAEQFI-AGRELTVAVLGTGA 203
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV +++ ++Y KY + + Y P P V +
Sbjct: 204 AAHALPV--------------IEIVAPGGNYDYEHKYF-SDETQYFCPADLPDAVAAEVA 248
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ A ++ LG + RID F+ + + W + N GM S
Sbjct: 249 DLAVRAYRALGCAGWGRID--FMLDADN-----------RPW----LLEANTSPGMTSHS 291
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRFPNLASYNSVSSHLPGRSS 265
+ A +G S++ + +I+ A + H P R+S
Sbjct: 292 LVPMAAKAIGMSYAELCVSIVSEAACKV-----------HSPARNS 326
>gi|386820781|ref|ZP_10107997.1| D-alanine--D-alanine ligase [Joostella marina DSM 19592]
gi|386425887|gb|EIJ39717.1| D-alanine--D-alanine ligase [Joostella marina DSM 19592]
Length = 325
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 123/293 (41%), Gaps = 68/293 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLTI 483
+F A+HG GEDG LQ LE +P+T + + +K AL + I
Sbjct: 78 IFNAIHGTPGEDGYLQGYLELLEIPHTSCPMYQAGLTFNKRDCLAALKPFGIKCASSYYI 137
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
NK ED E+ +K+ VK + G S GV+++ E+LT ++
Sbjct: 138 NKGQPINED-----------EIIAKVGLPCF-VKANKAGSSFGVSKVHTKENLTAAIEV- 184
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
F E DEI+ S G
Sbjct: 185 --------------------------------SFKEDDEIIIES----------FLDG-- 200
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E++VGVI G + +++P + D E K+QG + +TP + +S E
Sbjct: 201 --TEVSVGVITYKGEV-TVLPITEIVSENDFFDYEAKYQGKSQ-EITP---ARISDEMTQ 253
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
K + + + N L+++GFSR + ++ VD GE ++EVNT+PGMT ++L QA
Sbjct: 254 KVTEVAKKVYNTLKMKGFSRSE-YIFVD-GEPYLLEVNTIPGMTTESILPQQA 304
Score = 48.1 bits (113), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 39/203 (19%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VK +AGSS GV+ + ++L A + + DD +++E FL+G ++ G
Sbjct: 158 VKANKAGSSFGVSKVH-TKENLTAAIEVSFKE-DDEIIIESFLDGTEVSVGVITYKGE-- 213
Query: 102 DCHPVVLLP-TEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160
V +LP TE+ V E D F+Y KY Q TP R + + E
Sbjct: 214 ----VTVLPITEI---------VSEND-FFDYEAKYQGKSQEI--TPARISDEMTQKVTE 257
Query: 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 220
A ++ L + F+R S ++F E ++N I GM S
Sbjct: 258 VAKKVYNTLKMKGFSR--------SEYIFVDGEP----------YLLEVNTIPGMTTESI 299
Query: 221 LFQQASKVGFSHSNILRTIIGHA 243
L QQA+K G S + + I A
Sbjct: 300 LPQQAAKAGISLNELFNNAIEEA 322
>gi|257880772|ref|ZP_05660425.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
gi|257883396|ref|ZP_05663049.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
faecium 1,231,502]
gi|293384649|ref|ZP_06630508.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
gi|293387041|ref|ZP_06631608.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
gi|312907833|ref|ZP_07766821.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
gi|312909718|ref|ZP_07768569.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
gi|314943761|ref|ZP_07850498.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
gi|314949442|ref|ZP_07852781.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
gi|314996820|ref|ZP_07861831.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
gi|320152792|ref|YP_004172615.1| VanA [Enterococcus faecium]
gi|410506836|ref|YP_006937548.1| Vancomycin Teicoplanin A-type resistance protein VanA /
D-alanine--D-alanine ligase [Enterococcus faecium]
gi|418428924|ref|ZP_13001899.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS2]
gi|418431764|ref|ZP_13004651.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS3a]
gi|424802760|ref|ZP_18228227.1| D-ala D-ala ligase protein [Enterococcus faecium S447]
gi|424826409|ref|ZP_18251301.1| D-ala D-ala ligase protein [Enterococcus faecium R501]
gi|424852876|ref|ZP_18277256.1| D-ala D-ala ligase protein [Enterococcus faecium R499]
gi|424956450|ref|ZP_18371225.1| D-ala D-ala ligase protein [Enterococcus faecium R446]
gi|424960270|ref|ZP_18374802.1| D-ala D-ala ligase protein [Enterococcus faecium P1986]
gi|424965298|ref|ZP_18379290.1| D-ala D-ala ligase protein [Enterococcus faecium P1190]
gi|424967457|ref|ZP_18381154.1| D-ala D-ala ligase protein [Enterococcus faecium P1140]
gi|424970132|ref|ZP_18383665.1| D-ala D-ala ligase protein [Enterococcus faecium P1139]
gi|424975639|ref|ZP_18388782.1| D-ala D-ala ligase protein [Enterococcus faecium P1137]
gi|424977945|ref|ZP_18390912.1| D-ala D-ala ligase protein [Enterococcus faecium P1123]
gi|424981407|ref|ZP_18394141.1| D-ala D-ala ligase protein [Enterococcus faecium ERV99]
gi|424987193|ref|ZP_18399580.1| D-ala D-ala ligase protein [Enterococcus faecium ERV38]
gi|424992156|ref|ZP_18404243.1| D-ala D-ala ligase protein [Enterococcus faecium ERV26]
gi|424994945|ref|ZP_18406851.1| D-ala D-ala ligase protein [Enterococcus faecium ERV168]
gi|424998469|ref|ZP_18410154.1| D-ala D-ala ligase protein [Enterococcus faecium ERV165]
gi|425002075|ref|ZP_18413537.1| D-ala D-ala ligase protein [Enterococcus faecium ERV161]
gi|425003393|ref|ZP_18414764.1| D-ala D-ala ligase protein [Enterococcus faecium ERV102]
gi|425007958|ref|ZP_18419066.1| D-ala D-ala ligase protein [Enterococcus faecium ERV1]
gi|425011978|ref|ZP_18422834.1| D-ala D-ala ligase protein [Enterococcus faecium E422]
gi|425012923|ref|ZP_18423681.1| D-ala D-ala ligase protein [Enterococcus faecium E417]
gi|425017791|ref|ZP_18428282.1| D-ala D-ala ligase protein [Enterococcus faecium C621]
gi|425020563|ref|ZP_18430865.1| D-ala D-ala ligase protein [Enterococcus faecium C497]
gi|425024006|ref|ZP_18434096.1| D-ala D-ala ligase protein [Enterococcus faecium C1904]
gi|425051552|ref|ZP_18455212.1| D-ala D-ala ligase protein [Enterococcus faecium 506]
gi|425061362|ref|ZP_18464602.1| D-ala D-ala ligase protein [Enterococcus faecium 503]
gi|431750828|ref|ZP_19539529.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E2297]
gi|257815000|gb|EEV43758.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
gi|257819054|gb|EEV46382.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
faecium 1,231,502]
gi|281335159|gb|ADA62243.1| Vancomycin Teicoplanin A-type resistance protein VanA /
D-alanine--D-alanine ligase [Enterococcus faecium]
gi|291078043|gb|EFE15407.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
gi|291083526|gb|EFE20489.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
gi|310626165|gb|EFQ09448.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
gi|311289972|gb|EFQ68528.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
gi|313589048|gb|EFR67893.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
gi|313597583|gb|EFR76428.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
gi|313644171|gb|EFS08751.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
gi|319739744|gb|ADV60062.1| VanA [Enterococcus faecium]
gi|387714615|gb|EIK02739.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS2]
gi|387714715|gb|EIK02833.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS3a]
gi|402919248|gb|EJX39864.1| D-ala D-ala ligase protein [Enterococcus faecium S447]
gi|402924167|gb|EJX44390.1| D-ala D-ala ligase protein [Enterococcus faecium R501]
gi|402932922|gb|EJX52389.1| D-ala D-ala ligase protein [Enterococcus faecium R499]
gi|402944212|gb|EJX62643.1| D-ala D-ala ligase protein [Enterococcus faecium P1190]
gi|402945936|gb|EJX64258.1| D-ala D-ala ligase protein [Enterococcus faecium R446]
gi|402948379|gb|EJX66521.1| D-ala D-ala ligase protein [Enterococcus faecium P1986]
gi|402953054|gb|EJX70810.1| D-ala D-ala ligase protein [Enterococcus faecium P1137]
gi|402954394|gb|EJX72024.1| D-ala D-ala ligase protein [Enterococcus faecium P1140]
gi|402962523|gb|EJX79454.1| D-ala D-ala ligase protein [Enterococcus faecium P1139]
gi|402963805|gb|EJX80652.1| D-ala D-ala ligase protein [Enterococcus faecium ERV99]
gi|402964059|gb|EJX80882.1| D-ala D-ala ligase protein [Enterococcus faecium P1123]
gi|402974449|gb|EJX90499.1| D-ala D-ala ligase protein [Enterococcus faecium ERV26]
gi|402974927|gb|EJX90926.1| D-ala D-ala ligase protein [Enterococcus faecium ERV38]
gi|402978581|gb|EJX94314.1| D-ala D-ala ligase protein [Enterococcus faecium ERV168]
gi|402983024|gb|EJX98454.1| D-ala D-ala ligase protein [Enterococcus faecium ERV165]
gi|402984606|gb|EJX99901.1| D-ala D-ala ligase protein [Enterococcus faecium ERV161]
gi|402992099|gb|EJY06827.1| D-ala D-ala ligase protein [Enterococcus faecium ERV102]
gi|402994017|gb|EJY08586.1| D-ala D-ala ligase protein [Enterococcus faecium ERV1]
gi|402994998|gb|EJY09486.1| D-ala D-ala ligase protein [Enterococcus faecium E422]
gi|403002301|gb|EJY16291.1| D-ala D-ala ligase protein [Enterococcus faecium E417]
gi|403003697|gb|EJY17569.1| D-ala D-ala ligase protein [Enterococcus faecium C621]
gi|403008209|gb|EJY21733.1| D-ala D-ala ligase protein [Enterococcus faecium C1904]
gi|403009043|gb|EJY22516.1| D-ala D-ala ligase protein [Enterococcus faecium C497]
gi|403037432|gb|EJY48713.1| D-ala D-ala ligase protein [Enterococcus faecium 506]
gi|403041695|gb|EJY52698.1| D-ala D-ala ligase protein [Enterococcus faecium 503]
gi|430608600|gb|ELB45844.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E2297]
Length = 343
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 72/286 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 95 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 154
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 155 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 187
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 188 ------------------------------------DELDYAIESARQYDSKILIEQAVS 211
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTEA 661
E+ V+G ++ ++ ++ I + ++ + G +T P + +S E
Sbjct: 212 GCEVGCAVLGNSAAL-AVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAEE 268
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 269 RGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 313
>gi|386390159|ref|ZP_10074955.1| D-alanine--D-alanine ligase [Haemophilus paraphrohaemolyticus
HK411]
gi|385693843|gb|EIG24475.1| D-alanine--D-alanine ligase [Haemophilus paraphrohaemolyticus
HK411]
Length = 303
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 67/300 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T V ++ + + + +KL VKP+ +G S GV ++ +L
Sbjct: 110 -VGLPTAEMVVVKRGQAVDSAAI------IAKLGLPVF-VKPSCEGSSVGVFKVKTEAEL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
A+EE L F+ V +E L ++ + D
Sbjct: 162 Q---PAIEEALK-------------------------FDSIVLVEEFLAGAEYSVPVLD- 192
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
++P+V V G+ K+ + P +
Sbjct: 193 -----------------------GEVLPAVQVIPEGEFYDYHAKYISDNTQYVVPALSDE 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E KQ +++ G+SRID + NG ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAKIVKQAFDVVG----CRGWSRIDVMEDA-NGNFRLVEVNTCPGMTSHSIFPKSA 284
>gi|261493994|ref|ZP_05990500.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496952|ref|ZP_05993319.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307388|gb|EEY08724.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310340|gb|EEY11537.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 303
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 122/296 (41%), Gaps = 67/296 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L N
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T + V + + +VD + ++ +KL VK + +G S GV ++ E+L
Sbjct: 110 -VGLPTADMVVVQ-----RGQVVD-FDQIIAKLGLPVF-VKSSCEGSSVGVFKVKTKEEL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ E L F+ V +E L
Sbjct: 162 APAIH----------------------------EALKFDSIVLVEEFL------------ 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
GN V + G ++P+V V G+ K+ + P
Sbjct: 182 ---AGNEYSVPVLDG---------QVLPAVQVIPDGEFYDYHAKYVSDNTQYVVPA---- 225
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ E + + ++ + + G+SRID + G+ ++EVNT PGMT ++
Sbjct: 226 LNDERQAEVAKLVKAAYDVVGCRGWSRIDVMED-GEGKFRLVEVNTNPGMTSHSIF 280
>gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
SK141]
gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
SK141]
Length = 353
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 130/317 (41%), Gaps = 64/317 (20%)
Query: 410 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 469
H++ + A+ + VF +HG GEDGT+Q L E G+PY GPGV+AS MDK T
Sbjct: 87 HNVTDGTLFAEVD--VVFPILHGPFGEDGTIQGLFELSGLPYVGPGVLASSVGMDKEFTK 144
Query: 470 LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529
L ADL V E +LK ++ + +L VKPAR G S GV++
Sbjct: 145 KVLAA-ADLPV--------APEVILKG-RTELSEDEKQRLGLPVF-VKPARGGSSIGVSK 193
Query: 530 LCCAEDLTVYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
+ E+ V ALE+ E ++ EP + E+
Sbjct: 194 VNSWEEFPAAVDLALEDD-----------------------EKILVEPEIVGQEVEI--- 227
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
G + + T+ S+ +L+ + + G + K+
Sbjct: 228 ------------GVLHYADGTL-----LASVPALLAGIDDSDEG-FYGFDTKYLDNVVTA 269
Query: 649 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
P P + TE L R AL EG SR+D FV ++ V I E+NT+PG TP
Sbjct: 270 EIPAPFAPELTEKLRDMAIR---AFEALNCEGLSRVDFFVTEES--VYINEINTLPGFTP 324
Query: 709 STVLIHQALSEQPPMYP 725
+ + Q L+ YP
Sbjct: 325 IS-MYPQVLAASGVEYP 340
>gi|429213009|ref|ZP_19204174.1| D-alanine--D-alanine ligase [Pseudomonas sp. M1]
gi|428157491|gb|EKX04039.1| D-alanine--D-alanine ligase [Pseudomonas sp. M1]
Length = 315
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 65/137 (47%), Gaps = 30/137 (21%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 51 GIDVGDDLLQR--------LLSEKIDRAFIILHGRGGEDGSMQGLLEVAGIPYTGSGVLA 102
Query: 459 SKTCMDKVAT-----SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT 513
S MDK+ T SL L A VL D RR L P++
Sbjct: 103 SALAMDKLRTKRVWLSLGLPTPA-YAVLASEDDCRRAAAELGFPLI-------------- 147
Query: 514 LCVKPARDGCSTGVARL 530
VKPA +G S G+A++
Sbjct: 148 --VKPAHEGSSIGMAKV 162
>gi|270263961|ref|ZP_06192229.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
gi|270042154|gb|EFA15250.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
Length = 306
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 133/341 (39%), Gaps = 107/341 (31%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK----------- 465
+L + VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK
Sbjct: 49 QLKEHGFTKVFIALHGRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMG 108
Query: 466 --VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 523
VA +ALN L G + + + + L P++ VKP+R+G
Sbjct: 109 LPVAPYVALNRLQYAG--AEKQSLIARVEALGLPLI----------------VKPSREGS 150
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S G++++ + L ALEE F D++
Sbjct: 151 SVGMSKVTERDALEA---ALEEG------------------------------FRHDDDV 177
Query: 584 LFSSQSTNKNADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
L +W+ E TV ++G ++PS+ ++ +G + K
Sbjct: 178 LV-----------------EKWLSGPEYTVAMLGD-----QVLPSIRIQPAGVFYDYQAK 215
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGE 694
+ P +Q E+ A AL+ G+ R+D + D G
Sbjct: 216 YISDDTQYFCPSGLG---------AEQEAEMAALALRAYRGLDCSGWGRVDVMQDSD-GS 265
Query: 695 VLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
++EVNT PGMT +++ A Q + Q ++L+L
Sbjct: 266 FYLLEVNTSPGMTSHSLVPMAA--RQSGLSFSQLVARILEL 304
>gi|148271442|ref|YP_001221003.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147829372|emb|CAN00285.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 335
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 123/299 (41%), Gaps = 87/299 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT--- 482
VF+A+HGG GEDG LQ+LLE G+P+TG G + S MDK +A L GV T
Sbjct: 92 VFLALHGGSGEDGRLQALLELAGIPFTGSGSLGSALAMDK---DVAKTLLRAGGVRTPDW 148
Query: 483 -INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
I+ + E L P+V VKP G + G++ + AE+L
Sbjct: 149 IIDPEPDAVEPALGFPVV----------------VKPTGQGSTVGLSVVRAAEELPA--- 189
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
ALE +R HG + + E FV
Sbjct: 190 ALE----------LARRHGTV----------MVERFV----------------------- 206
Query: 602 NSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPASIM 657
R E+TVGV+ G+ ++ + V V E+ + K+Q G P P
Sbjct: 207 --RGRELTVGVLDGEALAVGEI--GVPVDEA---FTYAAKYQAGAIAETFPADLPSEVAE 259
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
A RI L+L G+SR D F D G + IIE N++PG+T +++L A
Sbjct: 260 EARAAALAAHRI------LRLAGYSRSD-FRLDDAGALWIIEANSLPGLTATSLLPQSA 311
>gi|359796556|ref|ZP_09299153.1| D-alanine--D-alanine ligase [Achromobacter arsenitoxydans SY8]
gi|359365519|gb|EHK67219.1| D-alanine--D-alanine ligase [Achromobacter arsenitoxydans SY8]
Length = 316
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 112/295 (37%), Gaps = 72/295 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 474
+LA E VFIA+HG GEDGT+Q LE G+PYTG G MAS MDK T + L H
Sbjct: 52 ELAAEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRIWLQHG 111
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
D VL + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPDFEVLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
D+ K R ++ E F+ E+
Sbjct: 156 YSDM----KEAYAAAARFDAE------------------VLAEQFITGREL--------- 184
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
TV V+G S +L P + + G E K+ P
Sbjct: 185 ----------------TVAVLGSGKSARAL-PVIEIAAPGGNYDYEHKYFSDDTQYFCP- 226
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + E ++ + L EG+ R D ++ DN ++E+NT PGMT
Sbjct: 227 --ATLPPEVAEEVARIAVKAYQTLGCEGWGRADFILDRDN-RPWLLEMNTSPGMT 278
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 73/207 (35%), Gaps = 35/207 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+++KP GS++G+T G D K D V+ E F+ G E T VL G
Sbjct: 137 LIIKPPHEGSTVGITKVVGYSD--MKEAYAAAARFDAEVLAEQFIT-GRELTVAVLGSGK 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV +++ ++Y KY + Y P P V +
Sbjct: 194 SARALPV--------------IEIAAPGGNYDYEHKYF-SDDTQYFCPATLPPEVAEEVA 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
A +Q LG + R D + L W ++N GM S
Sbjct: 239 RIAVKAYQTLGCEGWGRAD-FILDRDNR------------PW----LLEMNTSPGMTGHS 281
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
+ A VG S++++ I+ A +
Sbjct: 282 LVPMAAKAVGISYADLCVAILSEASCK 308
>gi|15599606|ref|NP_253100.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
gi|296391119|ref|ZP_06880594.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAb1]
gi|416859402|ref|ZP_11913833.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 138244]
gi|416876471|ref|ZP_11919276.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 152504]
gi|418583951|ref|ZP_13148017.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa MPAO1/P1]
gi|418589675|ref|ZP_13153596.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa MPAO1/P2]
gi|420141551|ref|ZP_14649226.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa CIG1]
gi|421155774|ref|ZP_15615240.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa ATCC 14886]
gi|421162755|ref|ZP_15621562.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa ATCC 25324]
gi|421518963|ref|ZP_15965636.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO579]
gi|39931188|sp|Q9LCT6.1|DDLB_PSEAE RecName: Full=D-alanine--D-alanine ligase B; AltName:
Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
synthetase B
gi|9950642|gb|AAG07798.1|AE004856_9 D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
gi|6715617|gb|AAF26456.1| D-alanine:D-alanine ligase B [Pseudomonas aeruginosa PAO1]
gi|334838471|gb|EGM17190.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 138244]
gi|334840749|gb|EGM19395.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 152504]
gi|375046430|gb|EHS38991.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa MPAO1/P1]
gi|375051531|gb|EHS43998.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa MPAO1/P2]
gi|403245693|gb|EJY59474.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa CIG1]
gi|404346368|gb|EJZ72718.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO579]
gi|404519951|gb|EKA30660.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa ATCC 14886]
gi|404533361|gb|EKA43191.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa ATCC 25324]
gi|453046252|gb|EME93969.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA21_ST175]
Length = 319
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|254238927|ref|ZP_04932250.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
gi|254244779|ref|ZP_04938101.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
gi|126170858|gb|EAZ56369.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
gi|126198157|gb|EAZ62220.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
Length = 319
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|160881909|ref|YP_001560877.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
gi|160430575|gb|ABX44138.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
Length = 353
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 136/370 (36%), Gaps = 92/370 (24%)
Query: 388 VEGLKKHSWFTGFDIADELPMRHS----INEWIKLAKENQATVFIAVHGGIGEDGTLQSL 443
VE + W G A P R I E K+ + VF +HG GEDGT+Q L
Sbjct: 55 VEDITSGVWRDGKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGL 114
Query: 444 LEAEGVPYTGPGVMASKTCMDKVAT-----SLALNHLADLGVLT-----INKDVRRKEDL 493
LE GVPY G GV+AS MDK+ T SL + A V +NK V R E+
Sbjct: 115 LELAGVPYVGCGVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENR 174
Query: 494 LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPN 553
+ P+ +KP+ G S G+ + +DL V
Sbjct: 175 ISYPVF----------------IKPSNAGSSKGITKAHNRDDLIV--------------- 203
Query: 554 SFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI 613
G+ E +IL+ E V R +E V
Sbjct: 204 ------GLKEAAEHDRKILVEETIV------------------------GREIECAV--- 230
Query: 614 GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIE--- 670
G M + V G+IL+ E + N +I+S E + Q I
Sbjct: 231 --LGGMEAKASGV-----GEILAAAEFYDYDAKYN-NADSKTIISPELPEGKAQEISDAA 282
Query: 671 -LIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFF 729
I A+ SR+D F+ D E++ E+NT+PG T + ++ L E + Q
Sbjct: 283 VKIFRAVDGYSLSRVDFFLEKDTNEIVFNEINTLPGFT--AISMYPMLWEAKGIAKPQLV 340
Query: 730 RKVLDLGSER 739
K++ R
Sbjct: 341 EKLIQTAFTR 350
>gi|91776618|ref|YP_546374.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
gi|122985407|sp|Q1GZ04.1|DDL_METFK RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|91710605|gb|ABE50533.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
Length = 302
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 115/297 (38%), Gaps = 88/297 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVL 481
VFIA+HG GEDGT+Q LE G+PYTG GVMAS MDK T L D ++
Sbjct: 59 VFIALHGRYGEDGTIQGALELMGIPYTGSGVMASSVGMDKWRTKLLWRAAGVVTPDFELV 118
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T + + E L P L VKPA +G S G++++ A L
Sbjct: 119 TADSNFDAIERKLGLP----------------LFVKPANEGSSIGISKVKAAGGLQA--- 159
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A+ + +P ++I E FV
Sbjct: 160 ----------------AYALAAKSDP---LVIAEQFVGGG-------------------- 180
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E TVG++G +P + + + + E K+ L P
Sbjct: 181 -----EYTVGILGGAA-----LPVIRIVPANEFYDYEAKYLRDDTQYLCPC--------G 222
Query: 662 LDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
LD + ++ A ALQ G+ R+D F+ + G +EVNT PGMT +++
Sbjct: 223 LDASLEE-QIKAEALQAFRIVGGRGWGRVD-FLMDEAGRHYFLEVNTSPGMTDHSLV 277
>gi|261345642|ref|ZP_05973286.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
gi|282566124|gb|EFB71659.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
Length = 306
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 132/318 (41%), Gaps = 75/318 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGT+Q +LE G+PYTG GVMAS MDK+ T L A L V
Sbjct: 58 VFIALHGRGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTK-QLWQGAGLSVSPYIS 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
R+K +K +L +++ L VKP+ +G S G++++ + AL
Sbjct: 117 LNRQKYTNIKK------EQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDS-------LDAL 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E IE+ + L+ E
Sbjct: 164 PEA---------------IELAFRFDDTLLIE---------------------------- 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA-SIMST 659
+W+ E TV V+G +++PS+ ++ G E K+ P S
Sbjct: 181 KWLSGPEYTVAVLGD-----NVLPSIRIQPPGVFYDYEAKYLSDETQYFCPSGLDSQREA 235
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
E D Q + A+ G+ R+D + D G+ ++EVNT PGMT +++ A
Sbjct: 236 ELADIAMQAYQ----AVGCRGWGRVDVMQDSD-GKFYLLEVNTSPGMTSHSLVPMAA--R 288
Query: 720 QPPMYPHQFFRKVLDLGS 737
Q + Q ++L+L S
Sbjct: 289 QAGLDFSQLVARILELAS 306
>gi|444914634|ref|ZP_21234776.1| D-alanine--D-alanine ligase [Cystobacter fuscus DSM 2262]
gi|444714493|gb|ELW55374.1| D-alanine--D-alanine ligase [Cystobacter fuscus DSM 2262]
Length = 314
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 128/315 (40%), Gaps = 77/315 (24%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
D+ +LP R L E FIA+HG GEDG +Q LLE +PYTG GVMAS
Sbjct: 49 IDVGKDLPAR--------LVAEKVEVAFIALHGRYGEDGCVQGLLECMFIPYTGSGVMAS 100
Query: 460 KTCMDKV-ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
MDKV A + + H G+ T +D + + L + VKP
Sbjct: 101 SLGMDKVFAKQVFVAH----GIPTPAYRSFTAKDAALAAVDSLPFSL-------PVVVKP 149
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
+R+G S GV LC + Y+ A+E+ S+ G I + E ++
Sbjct: 150 SREGSSVGV-HLCKTRE--AYLAAVED---------VSQLAGSI----------LVEQYI 187
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+ E+ + +GVI V + + E
Sbjct: 188 KGREVQ-----------------GGVLDDQALGVI-------------EVVAAREFYDYE 217
Query: 639 EKFQ-GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLI 697
K++ GGT L P P + E + + AL G SR D + + +G+V +
Sbjct: 218 AKYKSGGTTQYLFPAP---LPPEQYARVNEVCLAAHRALGCSGGSRSDVIL-LPSGDVFL 273
Query: 698 IEVNTVPGMTPSTVL 712
+E NT+PGMT S++L
Sbjct: 274 LETNTLPGMTESSLL 288
>gi|33151977|ref|NP_873330.1| D-alanine--D-alanine ligase [Haemophilus ducreyi 35000HP]
gi|39930851|sp|Q7VMY2.1|DDL_HAEDU RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|33148199|gb|AAP95719.1| D-alanine-D-alanine ligase B [Haemophilus ducreyi 35000HP]
Length = 303
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 122/300 (40%), Gaps = 75/300 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L N +
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWNAVG 111
Query: 476 ---ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
AD+ V V+R + +DI +++ +KL VKP+ +G S GV ++
Sbjct: 112 LPTADMVV------VQRGQ------AIDI-NQIIAKLSLPVF-VKPSSEGSSVGVFKVKT 157
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
E+L + A E F+ V +E L ++ +
Sbjct: 158 KEELLPAITAALE----------------------------FDTIVLVEEFLTGAEYSVP 189
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
D ++P+V + G+ K+ + P
Sbjct: 190 VLD------------------------GEVLPAVQIIPDGEFYDYHAKYLSDKTQYIVPA 225
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ E + + ++ + + G+SRID + N ++EVNT PGMT ++
Sbjct: 226 ----LTNERQAEVAKIVKAAYDVVGCRGWSRIDVMED-QNQNFRLVEVNTNPGMTSHSIF 280
>gi|405980048|ref|ZP_11038389.1| D-alanine-D-alanine ligase [Actinomyces turicensis ACS-279-V-Col4]
gi|404391423|gb|EJZ86487.1| D-alanine-D-alanine ligase [Actinomyces turicensis ACS-279-V-Col4]
Length = 378
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 117/312 (37%), Gaps = 74/312 (23%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 489
+HG GEDGT+Q L E V Y G GV +S MDK HL + DV +
Sbjct: 120 LHGPYGEDGTIQGLFEMANVRYVGCGVTSSAISMDK--------HLTKTVLAAAGIDVGQ 171
Query: 490 KEDLLKTPIVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECL 547
E + + T ++ + VKP R G S G+ ++ A +L V +K
Sbjct: 172 WELITALQWAEDPKACTDRVSALGYPVFVKPCRAGSSIGITKVDSAGELAVAMK------ 225
Query: 548 LRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVE 607
E N P +++ V E
Sbjct: 226 ---------------EAQNADPRVIVEAGIVGR--------------------------E 244
Query: 608 ITVGVIGKCGSMHSLMP--SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
I GV+G P + V E G+ E K+ I L P + ++ E K
Sbjct: 245 IECGVLGSATGHPRTAPLGEIEVPE-GEFYDYELKYVDTEAIGLVCP--ANVAPEFEKKI 301
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
+ +AL+ EG +R+D F N + G V+I EVNT+PG TP + M+P
Sbjct: 302 RDTAARAFDALECEGLARVDFFHNEETGSVIINEVNTMPGFTPIS------------MFP 349
Query: 726 HQFFRKVLDLGS 737
+ + LD S
Sbjct: 350 QMWAKGGLDYTS 361
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 30 TNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVVVELFLEGG 87
T+++ V VKP RAGSSIG+T +DS + + E D RV+VE + G
Sbjct: 188 TDRVSALGYPVFVKPCRAGSSIGIT----KVDSAGELAVAMKEAQNADPRVIVEAGIV-G 242
Query: 88 SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTP 147
E VL +G HP E+E+ + ++Y KY+ T+ + P
Sbjct: 243 REIECGVLGSATG---HPRTAPLGEIEVP---------EGEFYDYELKYVDTEAIGLVCP 290
Query: 148 PRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 207
IR+ A+ F L AR+D F + ET G+++
Sbjct: 291 ANVAPEFEKKIRDTAARAFDALECEGLARVD---------FFHNEET-------GSVIIN 334
Query: 208 DINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
++N + G S Q +K G +++++ T++ A R
Sbjct: 335 EVNTMPGFTPISMFPQMWAKGGLDYTSLIDTLLEEALDR 373
>gi|375361119|ref|YP_005129158.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|451348184|ref|YP_007446815.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens IT-45]
gi|371567113|emb|CCF03963.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|449851942|gb|AGF28934.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens IT-45]
Length = 361
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q LLE VPY G GV+AS MDKV + HL A G+
Sbjct: 97 VFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKV----IMKHLFAQAGLPQAK 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K+D +TP D + + VKPA G S G+++ E+L KA
Sbjct: 153 YAAFLKKDWKQTP--DSCLQQVEEELGYPCFVKPANLGSSVGISKCRSREELE---KA-- 205
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
FE E D + + A R
Sbjct: 206 -----------------------------FELAFEYDRKIVVEEGI---AGR-------- 225
Query: 605 WVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI +GV+G KC ++ + P D + K++ G + PA + +
Sbjct: 226 --EIEIGVLGNDEPKCSAVGEIAPKT------DFYDYKAKYEDGDTDLMI--PAQVTDEQ 275
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + I+ A+ G R D F+ D G+VLI EVNT+PG TP ++
Sbjct: 276 YAEISEMAIKAF-KAIDGSGLVRADFFLTND-GQVLINEVNTMPGFTPFSMF 325
>gi|403385800|ref|ZP_10927857.1| D-alanine--D-alanine ligase B [Kurthia sp. JC30]
Length = 354
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 143/341 (41%), Gaps = 71/341 (20%)
Query: 405 ELPMRHSINEWIKLAKENQ-ATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
E + + E++ KE + VF +HG GEDGT+Q LE +PY G GV+AS M
Sbjct: 69 ETATENDVTEFLTSLKERKFDVVFPLLHGTNGEDGTVQGFLEVLNLPYVGNGVLASSAGM 128
Query: 464 DKVATSLALNHLADLG----VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DKV+ L +A L I D +++D L I ++ +LT + VKPA
Sbjct: 129 DKVSMK-QLFEIAGLPQVPYTYFIRNDWNKQQDAL---IAEMEEKLTY-----PMFVKPA 179
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G S GV++ A+D +KA+E L + R + VE
Sbjct: 180 NLGSSVGVSK---ADDREALIKAVEVAL------KYDR-----------------KIVVE 213
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
T + +R VE+ V+G S+ + K + +
Sbjct: 214 TGVV-------------------AREVEM--AVLGNDEPETSVPGEIKPKTA--FYDYDS 250
Query: 640 KFQGGTGINLTPPPAS-IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ + L P P + + + D K+ +++ A G R D FV +N ++ I
Sbjct: 251 KYNDDSTDLLIPAPVTDDVQAQLSDMAKRAFKILDGA----GLVRADFFVTAEN-DIFIN 305
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVNT+PG TP V ++ L + + K++ LG ER
Sbjct: 306 EVNTLPGFTP--VSMYPILWKNTGLPYSDLIEKLISLGIER 344
>gi|330862508|emb|CBX72665.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica W22703]
Length = 301
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 122/288 (42%), Gaps = 72/288 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 481
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 37 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITL 96
Query: 482 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
T NKD R + ++T+KL L +KPA G S GV+++ A + Y
Sbjct: 97 TRANKDNYR------------FEQVTAKLGLP-LFIKPANQGSSVGVSKVRNAYE---YE 140
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ +F H ++L S +
Sbjct: 141 QAVAL--------AFDFDH----------------------KVLVESAIVGR-------- 162
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G SL V + S + S + K+ TG + PASI S
Sbjct: 163 ------EIECAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIGS-- 211
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
A+ + + L A AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 212 AVSDNIRAVALAAFRALECRGMARVDVFLTPDN-RVIINEINTLPGFT 258
>gi|339484873|ref|YP_004696659.1| D-alanine--D-alanine ligase [Nitrosomonas sp. Is79A3]
gi|338807018|gb|AEJ03260.1| D-alanine--D-alanine ligase [Nitrosomonas sp. Is79A3]
Length = 305
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 81/320 (25%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
+G D P ++ E L ++ FIA+HG GEDGT+Q +LE G+PYTG GVM
Sbjct: 37 SGVDAYPFDPAEQALEE---LVHQDFKRAFIALHGRFGEDGTIQGVLEWLGLPYTGSGVM 93
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517
AS MDK T L + + +LL+ D E ++ L VK
Sbjct: 94 ASALAMDKWRTKL---------IWQATGIQSPRYELLQA---DSNFEQVAETLGLPLIVK 141
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577
PAR+G + G++++ +DL + + +++ E F
Sbjct: 142 PAREGSTIGLSKVHHKQDLAEAYR----------------------LAAQHDALVLAEEF 179
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
+ E+TV ++G+ +P V ++ +G++
Sbjct: 180 IAG-------------------------TELTVAILGETS-----LPVVRIEIAGELYDY 209
Query: 638 EEKFQGGTGINLTPPP-----ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN 692
+ K+ P SI+ +AL + L +G+ R+D ++ N
Sbjct: 210 QAKYFSNETKYFCPSGLPDELESIIQNQALRAYQ--------VLGCQGWGRVDLILSQTN 261
Query: 693 GEVLIIEVNTVPGMTPSTVL 712
+ +E NT PGMT +++
Sbjct: 262 -QFYFLEANTSPGMTNHSLV 280
>gi|325295149|ref|YP_004281663.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065597|gb|ADY73604.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 291
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 126/312 (40%), Gaps = 74/312 (23%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
EL + +I E +K K ++ VFI +HG GEDGT+Q LLE G YTG S CMD
Sbjct: 37 ELELDENITEKLKQQKPDK--VFITLHGSPGEDGTVQGLLEIAGYNYTGCNTQTSAICMD 94
Query: 465 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
K T L T N V E + ++ ++ C VKPAR G +
Sbjct: 95 KDITKRVLK--------TYNIPVPAGETFFQGDKIE-----PVEIPC---VVKPARTGST 138
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++ +D + KA+EE + +I E ++E
Sbjct: 139 VGIS---VVKDENSFQKAVEEAF------KYDSK-------------IIIEEYIEGR--- 173
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 644
EITV V+ + +L P V E+G + K++
Sbjct: 174 ----------------------EITVAVL----NGFALPPVEIVTETG-FYDFDSKYKKQ 206
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704
T P ++ E L K ++ I L+ +G RID ++ N ++EVNT+P
Sbjct: 207 TTEYKVPANLNLKLQEKLKKISEK---IFKVLECKGAIRIDFRIDKWNNP-YVLEVNTIP 262
Query: 705 GMTPSTVLIHQA 716
GMT ++L A
Sbjct: 263 GMTERSLLPKAA 274
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 27 WFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG 86
+F +K++P VVKP R GS++G++V +S +KA + D ++++E ++E
Sbjct: 115 FFQGDKIEPVEIPCVVKPARTGSTVGISVVKDE-NSFQKAVEEAFK-YDSKIIIEEYIE- 171
Query: 87 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 146
G E T VL+ GF P V++ + +++ KY Q Y
Sbjct: 172 GREITVAVLN---GFALPP---------------VEIVTETGFYDFDSKY-KKQTTEYKV 212
Query: 147 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILF 206
P + + +++ + +F+ L RID + +W
Sbjct: 213 PANLNLKLQEKLKKISEKIFKVLECKGAIRID-----------------FRIDKWNNPYV 255
Query: 207 TDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
++N I GM + S L + A+ G ++ I+
Sbjct: 256 LEVNTIPGMTERSLLPKAANAAGIPFEKLIEEIL 289
>gi|395206180|ref|ZP_10396746.1| D-alanine--D-alanine ligase B [Propionibacterium humerusii P08]
gi|422441021|ref|ZP_16517834.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA3]
gi|422473386|ref|ZP_16549867.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA2]
gi|422572631|ref|ZP_16648198.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL044PA1]
gi|313835191|gb|EFS72905.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA2]
gi|314929163|gb|EFS92994.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL044PA1]
gi|314970887|gb|EFT14985.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA3]
gi|328905772|gb|EGG25548.1| D-alanine--D-alanine ligase B [Propionibacterium humerusii P08]
Length = 255
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 74/292 (25%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT-----IN 484
+HGG+GE+G L +L+ G+PY G G A + DK S+A + +GV T +
Sbjct: 2 LHGGLGENGALLEVLQLMGIPYVGSGPAACRISYDK---SIASRIMTAVGVATPQQVALP 58
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
D+ R +L P++ H +T K + VKPAR G S GV R+ + L
Sbjct: 59 HDIFR--ELGTRPVI---HSITKKFGLP-IIVKPARGGSSLGVTRVDDIDAL-------- 104
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
P + + A+ +M ++ E F+ E+ +T++
Sbjct: 105 -------PQAIANAYAYDDM-------VVIEEFIVGTELAIGMITTSEGT---------- 140
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
++P+V V+ G + + GG LT P E D+
Sbjct: 141 ----------------QVLPAVEVRPVGGVYDYSAMYTGGE-TRLTAP------AEITDE 177
Query: 665 CKQRIELIANALQLE----GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
Q +A +Q E G SR+DA V+ +G + +E PGMT ++++
Sbjct: 178 VAQAATEMARVVQGELDFFGISRVDAIVD-GSGRPVFLEAGAAPGMTATSLV 228
>gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J]
gi|229485977|sp|B2UCX5.1|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J]
Length = 331
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 113/295 (38%), Gaps = 73/295 (24%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA- 476
LAK+ V I++HG GEDGT+Q LLE G+PYTG GV+AS MDK AT
Sbjct: 65 LAKQGFDRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGL 124
Query: 477 ---DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
D +L D + D L P++ VKPAR+G S G+ ++
Sbjct: 125 PTPDFVMLHAGADWQAVADRLGLPLI----------------VKPAREGSSIGLTKVTSV 168
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
+L P ++ +A + ++ E F+E D
Sbjct: 169 AEL---------------PAAYEKAARL-------DRDVMAEQFIEGD------------ 194
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP- 652
E+T +IG+ S +L V + + F T P
Sbjct: 195 -------------ELTCPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPI 241
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
PA + + + + + L G+ R D + + ++E+NT PGMT
Sbjct: 242 PADVAA-----RVQALVVQAYRGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMT 291
>gi|398863550|ref|ZP_10619111.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM78]
gi|398247450|gb|EJN32896.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM78]
Length = 364
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 108/467 (23%), Positives = 174/467 (37%), Gaps = 134/467 (28%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 337
V VIFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGVIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
S+ + P + L + E+ A+ P +A R Q+V L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKA------RQQLVETAGPELLGH--- 98
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC-- 515
S CMDK I+K + R L TP V + ++ +C
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRASAARTGFAEVCGK 177
Query: 516 ------VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLPLFVKPANQGSSVGVSKVA---DEAEYAAAVELAL------SFD------------- 215
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
+++L S + EI V+G ++ S + V
Sbjct: 216 -----------EKVLIESAVKGR--------------EIECAVLGNEDAIASGCGEIVVH 250
Query: 630 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN 689
S + K+ + P + +S EA ++ + L G +R+D F+
Sbjct: 251 SG--FYSYDSKYIDDKAAEVVVP--ANISVEASERIRAMAVEAFQVLGCSGLARVDVFLT 306
Query: 690 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 736
++GEVLI E+N++PG T + ++ L + M + +++DL
Sbjct: 307 -ESGEVLINEINSLPGFT--RISMYPKLWQAAGMTYSELVTRLIDLA 350
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 45/210 (21%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLD---- 96
VKP GSS+GV+ V D + A + L D++V++E ++G E VL
Sbjct: 184 VKPANQGSSVGVS---KVADEAEYAAAVELALSFDEKVLIESAVKG-REIECAVLGNEDA 239
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ SG C +V+ ++Y KY+ + P +
Sbjct: 240 IASG--CGEIVV-----------------HSGFYSYDSKYIDDKAAEVVVPANISVEASE 280
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
IR A FQ LG AR+D + TE G +L +IN + G
Sbjct: 281 RIRAMAVEAFQVLGCSGLARVDVFL-----------------TESGEVLINEINSLPGFT 323
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+ S + G ++S ++ +I A ++
Sbjct: 324 RISMYPKLWQAAGMTYSELVTRLIDLALAK 353
>gi|74316140|ref|YP_313880.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
gi|123612472|sp|Q3SMH0.1|DDL_THIDA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|74055635|gb|AAZ96075.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
Length = 310
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVL 481
VFIA+HG GEDG +Q LE G+PYTG GVMAS MDK T L AD +L
Sbjct: 66 VFIALHGRYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTADWAML 125
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL-TVYV 540
D E L PI VKPAR+G S G++++ A L Y
Sbjct: 126 DATSDFAATEARLGLPIF----------------VKPAREGSSIGMSKVTEAGTLQAAYE 169
Query: 541 KALE 544
KA E
Sbjct: 170 KAAE 173
>gi|268591753|ref|ZP_06125974.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
gi|291312714|gb|EFE53167.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
Length = 306
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 120/293 (40%), Gaps = 73/293 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ LLE +PYTG GVMAS MDK+ T L L+++
Sbjct: 58 VFIALHGRGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRT----KQLWQGAGLSVSP 113
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + K + ++ +K+Q L VKP+ +G S G++++ E L
Sbjct: 114 YVYLTKQQYKQA---SYEQIVAKVQFLGLPLIVKPSLEGSSVGMSKVDNLEAL------- 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
P + A + DE L
Sbjct: 164 --------PAALDLAF-------------------QFDETLLI----------------E 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS-IMST 659
+W+ E TV V+G + +P + ++ G E K+ P + +
Sbjct: 181 KWLSGPEFTVAVLG-----DNTLPPIRIQPPGIFYDYEAKYLSDETQYFCPSGLDEQLES 235
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
E D + +++ EG+ R+D + NG+ ++EVNT PGMT +++
Sbjct: 236 ELADLALKAYQVVG----CEGWGRVDVMQD-SNGQFYLLEVNTSPGMTSHSLV 283
>gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1]
gi|171769403|sp|A7HNE8.1|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1]
Length = 316
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 63/288 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL----ALNHLADLGV 480
+F +HG GEDG +Q++L++ G+PYTG GV S DK +L + +L V
Sbjct: 56 ALFNILHGTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSV 115
Query: 481 LTI-NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
+ I N + E+ ++ I I ++ L C VKP ++G S G +C
Sbjct: 116 VKIPNFLLISSEEFEESKIYMIEEKIG--LPC---VVKPRKEGSSIG-THIC-------- 161
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
FS+ +E+L + ++ KN D ++
Sbjct: 162 ---------------FSK-----------------------EELLDALKNEFKNYDEMIV 183
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+ + EITV VI G+ +++P + ++ E K+ G + P +
Sbjct: 184 QEYIKGKEITVSVIDINGT-PTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAE---LDG 239
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
E +K + I +L + FSRID V +G +EVNT+PGMT
Sbjct: 240 ETTEKINHAVLKIYKSLGCKHFSRIDGIVK--DGVFYFLEVNTLPGMT 285
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 46/244 (18%)
Query: 7 ITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSL 63
+ +P+FLL SE E E + + K+ VVKP + GSSIG + + ++D+L
Sbjct: 116 VKIPNFLLISSEEFE-ESKIYMIEEKI---GLPCVVKPRKEGSSIGTHICFSKEELLDAL 171
Query: 64 KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV 123
K + D+ +V E G E T V+D+ P++ ++
Sbjct: 172 KNE----FKNYDEMIVQEYI--KGKEITVSVIDINGTPTVLPIL--------------EL 211
Query: 124 REKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 183
R K ++Y KY + P I +++ LG F+RIDG
Sbjct: 212 RPKKLFYDYEAKY-TDGMTEFIIPAELDGETTEKINHAVLKIYKSLGCKHFSRIDGI--- 267
Query: 184 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 243
+ G F ++N + GM + S L A+ G S ++ II A
Sbjct: 268 ---------------VKDGVFYFLEVNTLPGMTELSDLPMSANAFGISFDELVDLIIKEA 312
Query: 244 CSRF 247
C +
Sbjct: 313 CRKL 316
>gi|420257433|ref|ZP_14760191.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404515082|gb|EKA28859.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 366
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 122/288 (42%), Gaps = 72/288 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 481
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 482 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
T NKD R + ++T+KL L VKPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGLP-LFVKPANQGSSVGVSKVRNAYE---YE 205
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ +F H ++L S +
Sbjct: 206 QAVAL--------AFDFDH----------------------KVLVESAIVGR-------- 227
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G SL V + S + S + K+ TG + PASI S
Sbjct: 228 ------EIECAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIDS-- 276
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
A+ + + L A AL+ G +R+D F+ DN ++I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTADN-TIIINEINTLPGFT 323
>gi|395203759|ref|ZP_10394852.1| D-alanine--D-alanine ligase [Propionibacterium humerusii P08]
gi|422439216|ref|ZP_16516039.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3]
gi|422470703|ref|ZP_16547203.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2]
gi|422574470|ref|ZP_16650024.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1]
gi|313837545|gb|EFS75259.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2]
gi|314927576|gb|EFS91407.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1]
gi|314972484|gb|EFT16581.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3]
gi|328907845|gb|EGG27608.1| D-alanine--D-alanine ligase [Propionibacterium humerusii P08]
Length = 365
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL---- 481
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + LA+ GVL
Sbjct: 101 VFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMI---LAEAGVLVGPY 157
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ +D +ED D + + L+ L VKPAR G S G++R+ + L ++
Sbjct: 158 VVVRDHEWREDR------DAILKAAAHLE-YPLFVKPARGGSSIGISRVTNPDGLEAAIE 210
Query: 542 ALEE----CLL-------RIPPNSFSRAHGMIEMPNPPPEILIFEP 576
A E L+ I + HG + P EI++ +P
Sbjct: 211 AAREHDSKVLIEQGIQGREIECSVLDGRHGAAPRASAPGEIVLHDP 256
>gi|335039977|ref|ZP_08533117.1| D-alanine--D-alanine ligase [Caldalkalibacillus thermarum TA2.A1]
gi|334180093|gb|EGL82718.1| D-alanine--D-alanine ligase [Caldalkalibacillus thermarum TA2.A1]
Length = 357
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 133/324 (41%), Gaps = 63/324 (19%)
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLAD 477
KE VF VHG GEDGTLQ LLE VPY G GV+ S MDKV AL++L
Sbjct: 80 KETVDVVFPVVHGPYGEDGTLQGLLEMIDVPYVGSGVLGSSLGMDKVMMKRMFALHNLPH 139
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L R+E + + I E+ ++L VKPA G S G+ + A++
Sbjct: 140 GEYLAYT----RQE--IDKRLESICTEIEAQLGYPVF-VKPANLGSSVGINK---AKNEK 189
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
VKAL E +F + +I E F+
Sbjct: 190 QLVKALTEA------AAFDQK-------------VIVEAFI------------------- 211
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF-QGGTGINLTPPPASI 656
N R E+ +GV+G + + + E K+ +GG + + PA I
Sbjct: 212 ----NGR--ELEIGVLGNDADKLQTSAVGEIVSAAEFYDYESKYKEGGAELFI---PAKI 262
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
A + + E AL G +R+D F + ++ + E+NT+PG T + ++
Sbjct: 263 PERVANEMAQLAKEAFL-ALDCAGLARVDFFWDEKEDQLYLNEINTMPGFTEYS--MYPL 319
Query: 717 LSEQPPMYPHQFFRKVLDLGSERF 740
L ++ + + ++ LG ERF
Sbjct: 320 LFKKTGVSYQELVETLIQLGLERF 343
Score = 40.0 bits (92), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 39/211 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
V VKP GSS+G+ A ++ +L +A D +V+VE F+ G L+
Sbjct: 169 VFVKPANLGSSVGINKAKNEKQLVKALTEAA-----AFDQKVIVEAFINGRE------LE 217
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+G VL +LQ ++ ++Y KY P + P V N
Sbjct: 218 IG--------VLGNDADKLQTSAVGEIVSAAEFYDYESKY-KEGGAELFIPAKIPERVAN 268
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+ + A F L AR+D ++ ++ +IN + G
Sbjct: 269 EMAQLAKEAFLALDCAGLARVDFFWDEKEDQLY----------------LNEINTMPGFT 312
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHACSRF 247
+ S K G S+ ++ T+I RF
Sbjct: 313 EYSMYPLLFKKTGVSYQELVETLIQLGLERF 343
>gi|406981194|gb|EKE02703.1| hypothetical protein ACD_20C00346G0030 [uncultured bacterium]
Length = 317
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 70/320 (21%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G++ A+ + + I++ L +N +IA+HG GEDG +Q LLE G+PYTG GV A
Sbjct: 45 GYENAELIDVNKDISK--TLTDKNIEIAYIALHGKYGEDGCIQGLLEILGIPYTGCGVKA 102
Query: 459 SKTCMDKVATS--LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516
S MDK T L HL + + I R E+L + P+ + L +
Sbjct: 103 SAIAMDKEYTKRILKTQHLPVIPSVVI----RSLEELKEKPLSLNY----------PLMI 148
Query: 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576
KP +G S G++++ +L +K+ + F+
Sbjct: 149 KPVSEGSSIGMSKVNSETELEEAIKSAQN----------------------------FQT 180
Query: 577 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 636
E++ T K+ ITVGV+ S P + + +
Sbjct: 181 -----EVMLEEYITGKS--------------ITVGVL-DINSETIATPILEFRTKTEWYD 220
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ G + P TE + + NA+ +G SR+D FV N
Sbjct: 221 YEAKYTHGMTEFILPAEIPQGLTEDIKDLSVKAH---NAIGAKGMSRVD-FVLSQNNVPY 276
Query: 697 IIEVNTVPGMTPSTVLIHQA 716
I+E+NT+PGMT + L QA
Sbjct: 277 ILEINTIPGMTDLSDLPAQA 296
>gi|222159959|gb|ACM47313.1| VanA [Staphylococcus haemolyticus]
Length = 249
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 19 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 78
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 79 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 111
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 112 ------------------------------------DELDYAIESARQYDSKILIEQAVS 135
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 136 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 191
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 192 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 237
>gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 366
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 122/288 (42%), Gaps = 72/288 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 481
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 482 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
T NKD R + ++T+KL L +KPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGL-PLFIKPANQGSSVGVSKVRNAYE---YE 205
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ +F H ++L S +
Sbjct: 206 QAVAL--------AFDFDH----------------------KVLVESAIVGR-------- 227
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G SL V + S + S + K+ TG + PASI S
Sbjct: 228 ------EIECAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIGS-- 276
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
A+ + + L A AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTPDN-RVIINEINTLPGFT 323
>gi|398869891|ref|ZP_10625248.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM74]
gi|398210303|gb|EJM96955.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM74]
Length = 364
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 80/323 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F VHG +GEDG LQ LL +P+ G V+ S CMDK I+K
Sbjct: 102 IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDK----------------DISK 145
Query: 486 DVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ R L TP V + + E+ KL L VKPA G S GV+++ D
Sbjct: 146 RLLRDAGLAVTPFVTLTRATAARTGFAEVRGKLGLP-LFVKPANQGSSVGVSKVT---DE 201
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
Y A+E L SF ++L S + +
Sbjct: 202 AEYSAAVELAL------SFD------------------------TKVLIESAVSGR---- 227
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
EI V+G ++ S + V+ S + K+ T + P
Sbjct: 228 ----------EIECAVLGNEDAIASGCGEIVVRSG--FYSYDSKYIDDTAAEVVVPAN-- 273
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+S EA ++ + L G +R+D F+ D+GEVLI E+N++PG T + ++
Sbjct: 274 ISVEASERIRALAVEAFQVLGCSGLARVDVFLT-DSGEVLINEINSLPGFT--RISMYPK 330
Query: 717 LSEQPPMYPHQFFRKVLDLGSER 739
L + M + ++++L E+
Sbjct: 331 LWQATGMTYSELVTRLIELALEK 353
>gi|392985974|ref|YP_006484561.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa DK2]
gi|419751956|ref|ZP_14278365.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PADK2_CF510]
gi|384401533|gb|EIE47887.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321479|gb|AFM66859.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa DK2]
Length = 319
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 28/136 (20%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARL 530
VKPA +G S G+A++
Sbjct: 152 -VKPAHEGSSIGMAKV 166
>gi|107100005|ref|ZP_01363923.1| hypothetical protein PaerPA_01001026 [Pseudomonas aeruginosa PACS2]
gi|386060562|ref|YP_005977084.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa M18]
gi|421182468|ref|ZP_15639944.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa E2]
gi|347306868|gb|AEO76982.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa M18]
gi|404542055|gb|EKA51394.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa E2]
Length = 319
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLANEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|386309580|ref|YP_006005636.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418241388|ref|ZP_12867917.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550656|ref|ZP_20506700.1| D-alanine--D-alanine ligase [Yersinia enterocolitica IP 10393]
gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|351779189|gb|EHB21307.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789791|emb|CCO69740.1| D-alanine--D-alanine ligase [Yersinia enterocolitica IP 10393]
Length = 366
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 122/288 (42%), Gaps = 72/288 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 481
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 482 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
T NKD R + ++T+KL L +KPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGL-PLFIKPANQGSSVGVSKVRNAYE---YE 205
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ +F H ++L S +
Sbjct: 206 QAVAL--------AFDFDH----------------------KVLVESAIVGR-------- 227
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G SL V + S + S + K+ TG + PASI S
Sbjct: 228 ------EIECAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIGS-- 276
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
A+ + + L A AL+ G +R+D F+ DN V+I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTPDN-RVIINEINTLPGFT 323
>gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
Length = 349
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 120/303 (39%), Gaps = 88/303 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V++A+HG GEDG +Q+ L+ GVPYTG G + S MDK T + H
Sbjct: 101 VYLALHGACGEDGRIQATLDLLGVPYTGSGCLGSAIAMDKDMTKRLVAH----------- 149
Query: 486 DVRRKEDLLKTP---IVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVY 539
++TP V + E +L +T + VKP G S GV +DL
Sbjct: 150 -------KVRTPSWCTVTVTEENLEQLMEETKLPVVVKPIASGSSIGVTIAHTKDDLR-- 200
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
+ LEE + R G + E +V
Sbjct: 201 -RGLEESI---------RLGGRT----------VLEQYV--------------------- 219
Query: 600 KGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP---PPAS 655
KG EI V V+ GK +PS+ + D K+Q G + P PP
Sbjct: 220 KGR----EIQVAVLNGKA------LPSIEIIPQADFYDYANKYQPGAAREVCPAEIPP-- 267
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
E K + L L +SR D F+ ++GE +E+NT+PGMTP++++ +
Sbjct: 268 ----EWEKKVGDAAVAVFEELGLSVYSRAD-FIVTEDGEAYFLEINTLPGMTPTSLVPQE 322
Query: 716 ALS 718
A +
Sbjct: 323 AAA 325
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 52/227 (22%)
Query: 19 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKA--KGIILEGIDD 76
V E L KL VVVKP +GSSIGVT+A+ D L++ + I L G
Sbjct: 161 VTEENLEQLMEETKL-----PVVVKPIASGSSIGVTIAH-TKDDLRRGLEESIRLGG--- 211
Query: 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY 136
R V+E +++G E VL+ + LP S+++ + ++Y KY
Sbjct: 212 RTVLEQYVKG-REIQVAVLNGKA---------LP---------SIEIIPQADFYDYANKY 252
Query: 137 LP--TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 194
P ++V P P + + A +F+ LGL ++R D
Sbjct: 253 QPGAAREVC---PAEIPPEWEKKVGDAAVAVFEELGLSVYSRAD---------------- 293
Query: 195 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG 241
+ TE G F +IN + GM TS + Q+A+ VG ++ + TI+
Sbjct: 294 -FIVTEDGEAYFLEINTLPGMTPTSLVPQEAAAVGMDYATLCETIVA 339
>gi|386857590|ref|YP_006261767.1| D-alanine--D-alanine ligase [Deinococcus gobiensis I-0]
gi|380001119|gb|AFD26309.1| D-alanine--D-alanine ligase [Deinococcus gobiensis I-0]
Length = 339
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 118/314 (37%), Gaps = 80/314 (25%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T LA G+
Sbjct: 78 EGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAASMDKVMTK---QVLASAGI 134
Query: 481 ------LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L + ++ + D ++ D+ L VKPA G S G+
Sbjct: 135 PQVAWRLAVRREWAQNPDAVRARAHDLGF---------PLFVKPANLGSSVGI------- 178
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
S+ HG E+ + + F ++ + + +K
Sbjct: 179 ---------------------SKVHGPDEL-----DAALTLAFSLDRRVILEAMTAHKPR 212
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
E+ VG++G + S P + + + K+ G P P
Sbjct: 213 ------------EVEVGILGNDAPIAS--PVGELSFAAEFYDYATKYTEGQATMHIPAP- 257
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
+ E + ++ AL G +R+D F + GE+ + EVNT+PG T ++
Sbjct: 258 --LPAEVAARVRELALQAFLALDCAGLARVDFFYVEETGELFLNEVNTMPGFTTTS---- 311
Query: 715 QALSEQPPMYPHQF 728
MYP F
Sbjct: 312 --------MYPKLF 317
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 79/205 (38%), Gaps = 33/205 (16%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSS+G++ +G D L A + +D RV+ LE + ++VG
Sbjct: 167 VKPANLGSSVGISKVHGP-DELDAALTLAFS-LDRRVI----LEAMTAHKPREVEVGILG 220
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
+ P+ P EL F ++Y KY Q H P P V +RE
Sbjct: 221 NDAPIAS-PVG-ELSFAAE--------FYDYATKYT-EGQATMHIPAPLPAEVAARVREL 269
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A F L AR+D +++ E G + ++N + G TS
Sbjct: 270 ALQAFLALDCAGLARVDFFYV----------------EETGELFLNEVNTMPGFTTTSMY 313
Query: 222 FQQASKVGFSHSNILRTIIGHACSR 246
+ G S+S ++ ++ A R
Sbjct: 314 PKLFGAAGLSYSELVTRLVELALER 338
>gi|290957134|ref|YP_003488316.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
gi|260646660|emb|CBG69757.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
Length = 385
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 69/291 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ +LE GVPY G GV+AS K M +V TS L V
Sbjct: 122 VFPVLHGPYGEDGTLQGMLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLK--VGPYV 179
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ + E + I+D+ E L VKPAR G S G+ ++ +DL
Sbjct: 180 VIRPREWQLDEAAARKKIIDLAGE-----HGWPLFVKPARAGSSIGITKV---DDLAGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E ++ +++ +
Sbjct: 232 EAIAEA--------------------------------------------QRHDPKILVE 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIM 657
R EI GV+ + G S+ + E+ + K+ I+ TP PA +
Sbjct: 248 AALRGREIECGVLEFEDGPRASVPAEIPPPETHAYYDFDAKY-----IDSTPGIVPAPLT 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E + + ++ +A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 303 PEETAEVRRLAVDAF-DAASCEGLVRADFFLT-EDGEFVINEINTLPGFTP 351
>gi|383753249|ref|YP_005432152.1| D-alanine--D-alanine ligase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365301|dbj|BAL82129.1| D-alanine--D-alanine ligase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 310
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 115/299 (38%), Gaps = 64/299 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--N 473
+ + K VF A+HG GEDG LQ L+ G+PYTG GV+A+ MDK A+
Sbjct: 50 MDIQKAGAKMVFNALHGKFGEDGLLQGTLDMLGIPYTGSGVLAAAITMDKAASKRVFISE 109
Query: 474 HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
++ T N +K DL I + + VK A G S GV + A
Sbjct: 110 GISTPKCHTYN-SFEQKRDLAGEIIAEFGL---------PVVVKAASQGSSIGVYIVEKA 159
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
EDL +K E F DEIL
Sbjct: 160 EDLAPAIK---------------------------------EAFSYNDEILVEE------ 180
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
KG E+TV V G + P + + + E K+ G ++ P P
Sbjct: 181 ----FIKGR----EMTVAVWGDEDKKEAF-PIIEITTTSGRYDYESKYTKGASAHIIPAP 231
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S T+ + + + A +G +R+D + D +IEVN+VPGMT ++++
Sbjct: 232 VSEEKTKEMQELAIK---TYTACGCKGVARVDMMYSEDETP-YVIEVNSVPGMTETSLV 286
>gi|218893501|ref|YP_002442370.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
gi|218773729|emb|CAW29543.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
Length = 319
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 28/136 (20%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARL 530
VKPA +G S G+A++
Sbjct: 152 -VKPAHEGSSIGMAKV 166
>gi|194434413|ref|ZP_03066675.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
gi|417670783|ref|ZP_12320285.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74]
gi|420345172|ref|ZP_14846607.1| D-alanine--D-alanine ligase B [Shigella boydii 965-58]
gi|194417329|gb|EDX33436.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
gi|332098163|gb|EGJ03136.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74]
gi|391276955|gb|EIQ35716.1| D-alanine--D-alanine ligase B [Shigella boydii 965-58]
Length = 306
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 133/315 (42%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE +PYTG GVMAS +DK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMSLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G+ ++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMTKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P EA
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPA-----GLEAS 232
Query: 663 DKCKQRIELIANALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ + ++ + L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEANLQALVLKAWMTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
>gi|387896962|ref|YP_006327258.1| D-alanine--D-alanine ligase [Bacillus amyloliquefaciens Y2]
gi|387171072|gb|AFJ60533.1| D-alanine-D-alanine ligase [Bacillus amyloliquefaciens Y2]
Length = 354
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q LLE VPY G GV+AS MDKV + HL A G+
Sbjct: 90 VFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKV----IMKHLFAQAGLPQAK 145
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K+D +TP D + + VKPA G S G+++ E+L KA
Sbjct: 146 YAAFLKKDWKQTP--DSCLQQVEEELGYPCFVKPANLGSSVGISKCRNREELE---KA-- 198
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
FE E D + + A R
Sbjct: 199 -----------------------------FELAFEYDRKIVVEEGI---AGR-------- 218
Query: 605 WVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI +GV+G KC ++ + P D + K++ G + PA + +
Sbjct: 219 --EIEIGVLGNDEPKCSAVGEIAPKT------DFYDYKAKYEDGDTDLMI--PAQVTDEQ 268
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + I+ A+ G R D F+ D G+VLI EVNT+PG TP ++
Sbjct: 269 YAEISEMAIKAF-KAIDGSGLVRADFFLTND-GQVLINEVNTMPGFTPFSMF 318
>gi|333923548|ref|YP_004497128.1| D-alanine--D-alanine ligase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749109|gb|AEF94216.1| D-alanine--D-alanine ligase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 311
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 140/356 (39%), Gaps = 102/356 (28%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFDIA+++ I+LA F+A+HG GEDGT+Q LLE +PYTG GV+A
Sbjct: 43 GFDIAEQIKQHQ-----IELA-------FLALHGKYGEDGTIQGLLELLDIPYTGSGVLA 90
Query: 459 SKTCMDKVATS---------------LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH 503
S ++K+ T + N +++LG +++ ++ DL+ P V
Sbjct: 91 SAIAINKITTKKLFKLEGIPTPDFTVITRNEVSNLG---LDQACKKALDLVGLPAV---- 143
Query: 504 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 563
VK G + G++ + AE + A+EE L
Sbjct: 144 ------------VKANTQGSTIGISFVHQAEQMGA---AIEESL---------------- 172
Query: 564 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 623
+ D L+ K S +E+T V+G + +
Sbjct: 173 ---------------------------KYDQDVLVEKFIS-GMEVTASVLGNQDPVA--L 202
Query: 624 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSR 683
P + + + + K+ G ++ PP + E +K KQ L G R
Sbjct: 203 PLIEITSVTGVYDYQAKYTPGMSDHIIPPR---LPEETQNKIKQLAVKAFQVLGCRGLGR 259
Query: 684 IDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
+D V EV +EVNT+PGMT +T L A +P Q K++ L E+
Sbjct: 260 VDFMVQ--GSEVYALEVNTLPGMT-ATSLFPDAARYAGMEFP-QLVDKLVKLALEK 311
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVG 98
VVK GS+IG++ + ++ I E + D V+VE F+ G E TA VL
Sbjct: 143 VVKANTQGSTIGISFVH----QAEQMGAAIEESLKYDQDVLVEKFISG-MEVTASVLG-- 195
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ PV L P +++ +++Y+ KY P + PPR P N I
Sbjct: 196 ---NQDPVAL-PL---------IEITSVTGVYDYQAKYTPGMS-DHIIPPRLPEETQNKI 241
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFS-SSETKYGSTEWGTILFTDINLISGME 216
++ A FQ LG R+D F+ + V++ T G T T LF D +GME
Sbjct: 242 KQLAVKAFQVLGCRGLGRVD--FMVQGSEVYALEVNTLPGMT--ATSLFPDAARYAGME 296
>gi|345853151|ref|ZP_08806062.1| D-alanyl-alanine synthetase A [Streptomyces zinciresistens K42]
gi|345635376|gb|EGX56972.1| D-alanyl-alanine synthetase A [Streptomyces zinciresistens K42]
Length = 385
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 123/290 (42%), Gaps = 67/290 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADLGV 480
VF +HG GEDGTLQ LLE GVPY G GV+AS K M +V TS L + V
Sbjct: 122 VFPVLHGPYGEDGTLQGLLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLK-VGPYAV 180
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ ++ + E + I+D+ + L VKPAR G S G+ ++ +D +
Sbjct: 181 IR-PREWEQDEAAARRKIIDLAGD-----HGWPLFVKPARAGSSIGITKV---DDPSGLD 231
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ E +R H P+IL+ +
Sbjct: 232 EAIAE----------ARRHD--------PKILV--------------------------E 247
Query: 601 GNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
R EI GV+ + G S+ + ++ E K+ T L P P + T
Sbjct: 248 AALRGREIECGVLEFEDGPRASVPAEIPPPDTHAYYDFEAKYIDST-PGLVPAPLTPAET 306
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ QR+ + A A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 307 AEV----QRLAVDAFEAASCEGLVRADFFLT-EDGEFVINEINTMPGFTP 351
>gi|182682480|ref|YP_001830640.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
gi|386083814|ref|YP_006000096.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559112|ref|ZP_12210066.1| D-alanine-D-alanine ligase [Xylella fastidiosa EB92.1]
gi|182632590|gb|ACB93366.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
gi|307578761|gb|ADN62730.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338178380|gb|EGO81371.1| D-alanine-D-alanine ligase [Xylella fastidiosa EB92.1]
Length = 320
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 84/304 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS---LALN----HLA 476
VF +HG G GEDG +Q L++A GVPYTG V+ S MDKV T LAL A
Sbjct: 74 VFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYA 133
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L V +VR+ ++L P++ +KPA++G S GV+R+ E
Sbjct: 134 SLSVCATAVEVRKAVEMLGFPVI----------------IKPAKEGSSVGVSRVFALEH- 176
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE + +R G L+ E +E D
Sbjct: 177 ------LEEAVALA-----ARYEGE----------LLMEQLIEGD--------------- 200
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TV ++ + +PS+ + G K+ + P +
Sbjct: 201 ----------ELTVSILDEMA-----LPSIRIVPQGQWYDYNAKYLAEDTQYVCPGLDDV 245
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
E ++ L A +++ G+ R+D +G ++EVNT PGMT + L+ +
Sbjct: 246 AEAEI-----AQLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHS-LVPK 299
Query: 716 ALSE 719
A S+
Sbjct: 300 AASQ 303
>gi|167614192|gb|ABZ89697.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
Length = 310
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 63/298 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
++L K+ T +IA+HG GEDG++Q +LE +PYTG G+MAS +DK T L L
Sbjct: 48 MQLKKQKFDTAYIALHGKGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKL-LWKS 106
Query: 476 ADLGVLTINKDVR-RKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
A L VL DV +K+D+LK + + + KL L VKP G S G+
Sbjct: 107 AGLPVLP---DVYIQKKDILKN-LSSLLKKRFFKLDF-PLLVKPNNQGSSIGIT------ 155
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
VY+K ++ IE+ ++ E F+
Sbjct: 156 --LVYLK--------------NQLKNAIEVAFNYSNTILVEQFI---------------- 183
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+ E TV ++ ++PS+ + + K+Q + L P
Sbjct: 184 ---------KGTEYTVSILD-----EKILPSIQIITKNNFYDFASKYQLSSTQYLCP--- 226
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S ++ + K K+ + + L G RID ++ +N + ++E+NT+PGMT ++L
Sbjct: 227 SGLNLKQEKKLKKIAKKAWDTLGCNGCGRIDVILDSNN-KFWLLEINTIPGMTNRSLL 283
>gi|212704379|ref|ZP_03312507.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098]
gi|212672204|gb|EEB32687.1| D-ala D-ala ligase N-terminal domain protein [Desulfovibrio piger
ATCC 29098]
Length = 304
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 143/351 (40%), Gaps = 81/351 (23%)
Query: 391 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVP 450
LK+ T FD+ + + +E ++ A+++ I +HG GEDG +Q++LE P
Sbjct: 29 LKRGHAVTFFDLLE------NFDELLETARQHD-FALINLHGSPGEDGLVQAMLEKADCP 81
Query: 451 YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ 510
Y G G S LALN A + + + L + W +L
Sbjct: 82 YQGSGPSGS---------FLALNKAAAKQIFRMAGLPTADWEFLPVRPAEGWE---PRLP 129
Query: 511 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 570
L VK G S + R ++L +
Sbjct: 130 WP-LFVKTTTGGSSLRLGRATNRQEL---------------------------------D 155
Query: 571 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE 630
++ E F + +L Q K EIT G++G+ MP + ++
Sbjct: 156 AIMDEIFAAGEGVLIEPQLPGK--------------EITCGILGE-----EAMPPILIEP 196
Query: 631 -SGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIAN-ALQLEGFSRIDAFV 688
+GD E K+ G L P P S T + QR+ L A+ AL L+G+SR D +
Sbjct: 197 VAGDYFDYESKYATGGARELCPAPVSPAVTAEV----QRLALAAHKALGLKGYSRADFIL 252
Query: 689 NVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
D+ + ++EVNT+PGMTP++++ +A Q M Q K+++LG E+
Sbjct: 253 GPDD-SLHLLEVNTLPGMTPTSLVPQEA--AQLGMDFGQLLEKLIELGMEQ 300
>gi|116052444|ref|YP_792756.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
gi|421176551|ref|ZP_15634214.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa CI27]
gi|115587665|gb|ABJ13680.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
gi|404530885|gb|EKA40868.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa CI27]
Length = 319
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCRDAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|50082943|gb|AAT70093.1| D-alanyl-D-alanine ligase [Paenibacillus apiarius]
gi|66731650|gb|AAY52016.1| VanA [Paenibacillus apiarius]
Length = 343
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 110/288 (38%), Gaps = 72/288 (25%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT-- 482
F +HG GEDG +Q L E G+PY G + +S CMDK SLA + G+ T
Sbjct: 93 AAFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQSSAVCMDK---SLAYIIAKNDGIATPE 149
Query: 483 ---INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
INKD R P+ VKPAR G S GV ++ A++L
Sbjct: 150 FWVINKDDRPAAAAFTYPVF----------------VKPARSGSSYGVKKVNGADELDAA 193
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599
+++ + D + Q+
Sbjct: 194 IESAR----------------------------------QYDSKILIEQAVLGCEVGCAV 219
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
GNS E+ VG + + H + I E +G +T P + +S
Sbjct: 220 LGNSS--ELIVGEVDQIRLQHGIF---------RIHQEAEPEKGSENAVITIP--ADLSA 266
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
E + + + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 267 EERGRIRDTAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 313
>gi|431787062|ref|ZP_19575037.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E6045]
gi|430644379|gb|ELB80012.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E6045]
Length = 307
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 59 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 118
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 119 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 151
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 152 ------------------------------------DELDYAIESARQYDSKILIEQAVS 175
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 176 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAFITVP--ADLSAE 231
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 232 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 277
>gi|313106940|ref|ZP_07793143.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
gi|355650330|ref|ZP_09056030.1| D-alanine-D-alanine ligase B [Pseudomonas sp. 2_1_26]
gi|386064145|ref|YP_005979449.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa NCGM2.S1]
gi|421170159|ref|ZP_15628133.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa ATCC 700888]
gi|310879645|gb|EFQ38239.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
gi|348032704|dbj|BAK88064.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa NCGM2.S1]
gi|354826879|gb|EHF11082.1| D-alanine-D-alanine ligase B [Pseudomonas sp. 2_1_26]
gi|404524232|gb|EKA34583.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa ATCC 700888]
Length = 319
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCRDAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 366
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 122/288 (42%), Gaps = 72/288 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVL 481
+F VHG +GEDG+LQ LL +P+ G GV+ S MDK T L ++A L
Sbjct: 102 IFPIVHGTLGEDGSLQGLLRMANIPFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITL 161
Query: 482 T-INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
T NKD R + ++T+KL L +KPA G S GV+++ A + Y
Sbjct: 162 TRANKDNYR------------FEQVTAKLGLP-LFIKPANQGSSVGVSKVRNAYE---YE 205
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A+ +F H ++L S +
Sbjct: 206 QAVAL--------AFDFDH----------------------KVLVESAIVGR-------- 227
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI V+G SL V + S + S + K+ TG + PASI S
Sbjct: 228 ------EIECAVMGNDNPQASLCGEVVI--SDEFYSYDTKYINETGAKVI-IPASIDS-- 276
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
A+ + + L A AL+ G +R+D F+ DN ++I E+NT+PG T
Sbjct: 277 AVSDNIRAVALAAFRALECRGMARVDVFLTADN-TIIINEINTLPGFT 323
>gi|49083732|gb|AAT51128.1| PA4410, partial [synthetic construct]
Length = 320
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ ++L R L +E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 55 GIDVGEDLLQR--------LVEEKIDRAFIILHGRGGEDGSVQGLLECAGIPYTGSGVLA 106
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L D VL D R L P++
Sbjct: 107 SALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCREAAQRLGFPLI--------------- 151
Query: 515 CVKPARDGCSTGVARLCCAEDL 536
VKPA +G S G+A++ ++L
Sbjct: 152 -VKPAHEGSSIGMAKVGGLDEL 172
>gi|146305959|ref|YP_001186424.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
gi|421503365|ref|ZP_15950314.1| D-alanine--D-alanine ligase [Pseudomonas mendocina DLHK]
gi|190359205|sp|A4XQS6.1|DDL_PSEMY RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|145574160|gb|ABP83692.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
gi|400345838|gb|EJO94199.1| D-alanine--D-alanine ligase [Pseudomonas mendocina DLHK]
Length = 313
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 67/146 (45%), Gaps = 36/146 (24%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+ R LA E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 49 GIDVGDDFLQR--------LASEKIDRAFIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 100
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 513
S MDK+ T + L L TP + LTS+ C+
Sbjct: 101 SALAMDKLRTKQVWHSLG-----------------LPTPRHAV---LTSQADCEAAAAEL 140
Query: 514 ---LCVKPARDGCSTGVARLCCAEDL 536
L VKPA +G S G+A++ E L
Sbjct: 141 GFPLIVKPAHEGSSIGMAKVESVEAL 166
>gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
Length = 367
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 124/321 (38%), Gaps = 68/321 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN--HLADLGVLTI 483
VF +HG GEDGT+Q L E +PY G GV+AS MDK + + HL + L +
Sbjct: 98 VFPVLHGSFGEDGTIQGLFEMADLPYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFLCV 157
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
K + I+ EL L VKP R G S G + A + T ++ +
Sbjct: 158 RKFQWDNPKEREGFILHAEKELEY-----PLFVKPCRVGSSVGAGK---ASNRTELLQKM 209
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
EE L ++LI E + EI S GN
Sbjct: 210 EEAFLW------------------DSKVLI-EACIAAREIECSVT------------GND 238
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
+V T G ++P S + + K+ G L P + D
Sbjct: 239 EYVVYTPG---------EIIP------SHEFYDYDAKYIDPDGAQLKIP------ADIDD 277
Query: 664 KCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
+ ++ I IA AL L G +R+D F++ + + EVNT+PG T + + + E
Sbjct: 278 EQRREIRSIAGKAYRALDLTGLARVDFFIDKKTKTIYLNEVNTIPGFT--AISMFPKMCE 335
Query: 720 QPPMYPHQFFRKVLDLGSERF 740
M + + DL ERF
Sbjct: 336 ASGMPYRELIMHLFDLAIERF 356
>gi|255684796|gb|ACU27887.1| D-alanine:D-lactate ligase [Staphylococcus aureus]
Length = 314
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 72 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 131
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 132 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 164
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 165 ------------------------------------DELDYAIESARQYDSKILIEQAVS 188
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 189 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 244
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 245 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 290
>gi|415720290|ref|ZP_11467826.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 00703Bmash]
gi|388061789|gb|EIK84426.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 00703Bmash]
Length = 373
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 57/294 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-------ATSLALNHLAD 477
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK A +A+
Sbjct: 98 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIAVAPGIA 157
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L T D + I++ E KL+ L VKP+R G S GV ++ T
Sbjct: 158 LDARTFASDAANRFGAYANEILEQVEE--EKLEY-PLFVKPSRAGSSFGVTKI-----ET 209
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD-R 596
KAL + + + + ++ E ++ EI + + + +
Sbjct: 210 RDAKALADAVYEASKHDWR---------------VLVEQGIDAREIECAVLAARDGEEPK 254
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPA 654
W G V+ K +++G+ + K+ ++ P
Sbjct: 255 ASWPGEV--------VLDK-------------RQAGEDQFYDFDSKYMDSAASHVEVP-- 291
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E L + ++ A G SR+D+FV D G V++ E+NT+PG TP
Sbjct: 292 ADLPEETLQRVRKTALAAFKAADGRGLSRVDSFVTKD-GRVILNEINTMPGFTP 344
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 38/206 (18%)
Query: 42 VKPTRAGSSIGVTV-----AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
VKP+RAGSS GVT A + D++ +A D RV+VE ++ E VL
Sbjct: 193 VKPSRAGSSFGVTKIETRDAKALADAVYEAS-----KHDWRVLVEQGID-AREIECAVLA 246
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
G + P P EV L D R+ +D +++ KY+ + P P
Sbjct: 247 ARDGEE--PKASWPGEVVL------DKRQAGEDQFYDFDSKYMDSAASHVEVPADLPEET 298
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+ +R+ A F+ +R+D + T+ G ++ +IN + G
Sbjct: 299 LQRVRKTALAAFKAADGRGLSRVDSFV-----------------TKDGRVILNEINTMPG 341
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
S + G S+S+++ +I
Sbjct: 342 FTPISMYPKAWEATGISYSDLITKLI 367
>gi|410628631|ref|ZP_11339349.1| D-alanine-D-alanine ligase [Glaciecola mesophila KMM 241]
gi|410151635|dbj|GAC26118.1| D-alanine-D-alanine ligase [Glaciecola mesophila KMM 241]
Length = 296
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 387 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 446
L G+ H GFD A+ +E +L ++ V I +HG GEDG+LQ L+
Sbjct: 24 LSAGVNAH----GFDPAE--------SELHQLVEQKFDRVLIMLHGRGGEDGSLQGALQQ 71
Query: 447 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 506
+PYTG GV+ S CMDK+ + LG+ T N ++ K D DI L
Sbjct: 72 MNMPYTGTGVLGSALCMDKIRSKQVWQS---LGLPTANYEIADKRDFNAANCSDIMSRLG 128
Query: 507 SKLQCKTLCVKPARDGCSTGVARL 530
+ VKPA++G S G+A++
Sbjct: 129 -----DLVMVKPAQEGSSIGMAKV 147
>gi|257454701|ref|ZP_05619957.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
gi|257448011|gb|EEV22998.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
Length = 307
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 118/293 (40%), Gaps = 80/293 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG-----V 480
VF +HG GEDG+LQ +L+ +PYTG GV+AS MDK L L DL V
Sbjct: 64 VFNVLHGTFGEDGSLQGVLDGFNIPYTGCGVLASAIAMDKFRNRLVWQAL-DLPNVPYVV 122
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
L N D E L P L VKPA +G S GV + +
Sbjct: 123 LDDNTDFTAIEQQLGLP----------------LFVKPAAEGSSVGVFK----------I 156
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
K + E P + HG I A++ +
Sbjct: 157 KEVGELAKTYP--QLKQYHGAI------------------------------LAEKAITG 184
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G E ++G ++PS+ + + + E K+ + P S E
Sbjct: 185 G-----EYACSILGD-----EVLPSIRIIPTTEFYDYEAKYNRDDTVYQCPSDLS----E 230
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
A ++ Q+I A A+ +G+SR+D F+ D G + ++E+NTVPGMT +++
Sbjct: 231 AQEQTMQQIARKAFAAIGGKGWSRVD-FLRDDEGTLYLLELNTVPGMTSHSLV 282
>gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
Length = 364
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 110/282 (39%), Gaps = 60/282 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + N
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFNT 160
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD---- 209
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L F E D + Q KG
Sbjct: 210 --------------------------LAF----EFDHKVIVEQGI---------KGR--- 227
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EI V+G S + + + D + + K+ G + P A ++ E DK
Sbjct: 228 -EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEINDKI 282
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 283 RAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|258515376|ref|YP_003191598.1| D-alanine--D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
gi|257779081|gb|ACV62975.1| D-alanine/D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
Length = 314
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 78/332 (23%)
Query: 389 EGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEG 448
E + K G+ + ++ ++ +I E IK +E+ F+A+HG GEDG +Q LLE
Sbjct: 24 EAIYKALLGLGYQVV-KIDVQENIAERIK--EESIDMAFLALHGKYGEDGCIQGLLEILN 80
Query: 449 VPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSK 508
+PYTG GV+AS MDK+AT L A L + +RR ++ T +
Sbjct: 81 IPYTGSGVLASALAMDKIATKRMLLQ-AKLPTAEFSL-IRRSS----------YNNETKE 128
Query: 509 LQCKT--------LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHG 560
C+T L VK G + G++ + E L ALEE P
Sbjct: 129 EICQTLFKYMPLPLVVKAPTQGSTIGISFVNNEEQLP---DALEEAFRYDP--------- 176
Query: 561 MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 620
I + E F+ E+T V+G +
Sbjct: 177 ----------IALIEQFIS-------------------------GTEVTATVLGN--NQP 199
Query: 621 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL-IANALQLE 679
+P + + + + + K+ G ++ PP E + K Q + + + +
Sbjct: 200 EALPLIEIVSNTGVYDYKAKYTVGLSDHIMPPRLK----EEVQKNVQELAVKVFKTMGCS 255
Query: 680 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
G +R+D V+ N I+E+NT+PGMT +++
Sbjct: 256 GLARVDFIVDA-NSNPYILEINTIPGMTETSL 286
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 44/211 (20%)
Query: 40 VVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
+VVK GS+IG++ + D+L++A D ++E F+ G+E TA VL
Sbjct: 142 LVVKAPTQGSTIGISFVNNEEQLPDALEEAFRY-----DPIALIEQFI-SGTEVTATVLG 195
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH-TPPRFPIVVI 155
+ P L P +++ +++Y+ KY T ++ H PPR V
Sbjct: 196 -----NNQPEAL-PL---------IEIVSNTGVYDYKAKY--TVGLSDHIMPPRLKEEVQ 238
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+++E A +F+ +G AR+D + ++ Y +IN I GM
Sbjct: 239 KNVQELAVKVFKTMGCSGLARVD--------FIVDANSNPY---------ILEINTIPGM 281
Query: 216 EQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+TS A G S +++ +I A +
Sbjct: 282 TETSLAPDAARAAGISFTDLTDRMIKFALEK 312
>gi|406025642|ref|YP_006705943.1| hypothetical protein CAHE_0746 [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404433241|emb|CCM10523.1| Putative uncharacterized protein [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 464
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 43/233 (18%)
Query: 15 QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSL-----KKAKGI 69
Q E+ NW + + +D G P R I T Y ++D L KK I
Sbjct: 244 QWKSYTRKEIKNW-LASLIDVREGMGF--PLRIDDQIFYT-PYTLLDYLELYFQKKQPPI 299
Query: 70 IL--EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKD 127
+L + +++E F++G EF+ ++L+ G +P+ L PTE+ +G V
Sbjct: 300 LLISTQAETSIIIEAFIQG-REFSCMILEAEKG---NPIPLPPTEM---VKGKVH----- 347
Query: 128 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTH 187
F+YR KYLP V TP ++ IR+ A LFQ L +ARIDG+
Sbjct: 348 --FDYRAKYLPGI-VRKQTPMVLSTALLKRIRKQAINLFQLLDCQVYARIDGFI------ 398
Query: 188 VFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
T+ I+ D N +GM SFLF QA+++G + +L II
Sbjct: 399 -----------TDDNEIILNDPNTTAGMHPASFLFHQAAEIGLHPTQLLTFII 440
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 139/320 (43%), Gaps = 43/320 (13%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH---LADLGVLTI 483
F+ +HG GEDGT+Q LL +PYTG ++ S ++KV L L V
Sbjct: 119 FLCLHGPYGEDGTIQGLLRWYQIPYTGSDILPSALAINKVFQQKLLQQSGFLLPHSVSLT 178
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
K+ R +D K ++ ++T+ L VK +R G S GV + L ++ A+
Sbjct: 179 QKEWLRTDDKKK-----LFDQITATLGL-PFVVKSSRQGSSIGVT-IIEHSVLDAFINAV 231
Query: 544 E-----ECLLRIPPNSFSRAH------GMIEM------PNPPPEILIFEPFVETD--EIL 584
E + S++R +I++ P + + + P+ D E+
Sbjct: 232 HKAFFMEAISYDQWKSYTRKEIKNWLASLIDVREGMGFPLRIDDQIFYTPYTLLDYLELY 291
Query: 585 FSSQS------TNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDI-LS 636
F + + + ++ + + E + ++ + G+ L P+ VK G +
Sbjct: 292 FQKKQPPILLISTQAETSIIIEAFIQGREFSCMILEAEKGNPIPLPPTEMVK--GKVHFD 349
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
K+ G TP ++ST L + +++ + L + ++RID F+ DN E++
Sbjct: 350 YRAKYLPGIVRKQTP---MVLSTALLKRIRKQAINLFQLLDCQVYARIDGFITDDN-EII 405
Query: 697 IIEVNTVPGMTPSTVLIHQA 716
+ + NT GM P++ L HQA
Sbjct: 406 LNDPNTTAGMHPASFLFHQA 425
>gi|381405685|ref|ZP_09930369.1| D-alanine--D-alanine ligase [Pantoea sp. Sc1]
gi|380738884|gb|EIB99947.1| D-alanine--D-alanine ligase [Pantoea sp. Sc1]
Length = 306
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 127/323 (39%), Gaps = 69/323 (21%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L ++ FIA+HG GEDG+LQ++LE +PYTG GVMAS MDK+ T L
Sbjct: 48 LTLKEQGFTKAFIALHGRGGEDGSLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGR 107
Query: 476 ADLGVLTINKDV---RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
L + V R++ D +D + L VKPA +G S G++R+
Sbjct: 108 G----LPSGRFVWLTRQQFD----AGLDAESDAAIAALGLPLFVKPACEGSSVGISRV-- 157
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
N S +E+ ++ E F+
Sbjct: 158 --------------------NDLSALPAALELAFKHDNDVLVEAFLSG------------ 185
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
E TV ++G ++P++ +K + + E K+ L P
Sbjct: 186 -------------AEYTVAIVGD-----RILPAIEIKSASEFYDYEAKYISDDTQYLCPA 227
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+S E + +Q + AL G+ R+D + G ++E NT PGMT +++
Sbjct: 228 D---LSAEREAELQQLVLAAWRALGCRGWGRVDVMTD-GEGNFQLLEANTSPGMTSHSLV 283
Query: 713 IHQALSEQPPMYPHQFFRKVLDL 735
A +Q M Q +L+L
Sbjct: 284 PMAA--KQAGMRFPQLVAHILEL 304
>gi|254967068|gb|ACT97572.1| putative D-alanine-D-alanine ligase [uncultured organism]
Length = 356
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 110/286 (38%), Gaps = 64/286 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PY G GV AS MDK T + GV
Sbjct: 98 VFPVLHGVGGEDGTMQGLLELAGIPYVGCGVAASANTMDKALTKKVIE---GTGVRQARY 154
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ + D + + + L + VKP G S GVA+
Sbjct: 155 YLALRYDFERNAEAVVAAAAET-LGAFPVFVKPCSQGSSVGVAK---------------- 197
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
N A G+ E ++L+ E F++ E+
Sbjct: 198 -----ANNLLELAEGLTEALKLDTKVLV-EEFIDGHEV---------------------- 229
Query: 606 VEITVGVIGKCGSMHSLMPSVT----VKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
+C + +L P + + + + + + K++ + P + ++ E
Sbjct: 230 ---------ECAVLGNLEPQASTVGEIAPTQEFYTFDAKYKDESSRLYIP---AHITEEQ 277
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
L +Q + AL G SR+D FV D+GEV+ E+N +PG T
Sbjct: 278 LATVRQDAVRVYTALGCRGLSRVDFFVTHDSGEVVFNELNAIPGFT 323
>gi|415724357|ref|ZP_11469845.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 00703C2mash]
gi|388062513|gb|EIK85122.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 00703C2mash]
Length = 381
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 57/294 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-------ATSLALNHLAD 477
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK A +A+
Sbjct: 106 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIAVAPGIA 165
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L T D + I++ E KL+ L VKP+R G S GV ++ T
Sbjct: 166 LDARTFASDAANRFGAYANEILEQVEE--EKLEY-PLFVKPSRAGSSFGVTKI-----ET 217
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD-R 596
KAL + + + + ++ E ++ EI + + + +
Sbjct: 218 RDAKALADAVYEASKHDWR---------------VLVEQGIDAREIECAVLAARDGEEPK 262
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPA 654
W G V+ K +++G+ + K+ ++ P
Sbjct: 263 ASWPGEV--------VLDK-------------RQAGEDQFYDFDSKYMDSAASHVEVP-- 299
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E L + ++ A G SR+D+FV D G V++ E+NT+PG TP
Sbjct: 300 ADLPEETLQRVRKTALAAFKAADGRGLSRVDSFVTKD-GRVILNEINTMPGFTP 352
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 38/206 (18%)
Query: 42 VKPTRAGSSIGVTV-----AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
VKP+RAGSS GVT A + D++ +A D RV+VE ++ E VL
Sbjct: 201 VKPSRAGSSFGVTKIETRDAKALADAVYEAS-----KHDWRVLVEQGID-AREIECAVLA 254
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
G + P P EV L D R+ +D +++ KY+ + P P
Sbjct: 255 ARDGEE--PKASWPGEVVL------DKRQAGEDQFYDFDSKYMDSAASHVEVPADLPEET 306
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+ +R+ A F+ +R+D + T+ G ++ +IN + G
Sbjct: 307 LQRVRKTALAAFKAADGRGLSRVDSFV-----------------TKDGRVILNEINTMPG 349
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
S + G S+S+++ +I
Sbjct: 350 FTPISMYPKAWEATGISYSDLITKLI 375
>gi|303249381|ref|ZP_07335607.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
gi|302489219|gb|EFL49184.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
Length = 306
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 129/315 (40%), Gaps = 71/315 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
F+ +HG GEDG Q+LL+A GVPY G G + LALN A + +
Sbjct: 57 AFLNLHGAPGEDGLPQALLDAAGVPYQGAG---------PAGSFLALNKAASKQLFISHG 107
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ D L TP + VKP G S VY+
Sbjct: 108 LPTPRWDFLPTPPPAGYAPAFPP----PWFVKPNSGGSS-------------VYMS---- 146
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+R P E+P E +F++ L+ +G
Sbjct: 147 -LVRDP----------AELP-------------AALEKIFATGDAA-----LIEEGLCGG 177
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
+E+T V+G +L P + ++G+ K+Q + P P T+ L
Sbjct: 178 MELTCAVLGD----EALPPILIRPKAGEFFDYASKYQPEAADEICPAPIPRALTDELG-- 231
Query: 666 KQRIELIANA-LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
R+ L A+A L L G+SR D F++ D ++++EVNT+PGMTP+++L A + +
Sbjct: 232 --RLSLAAHAALGLTGYSRAD-FIHTDKHGLMLLEVNTLPGMTPTSLLPRSARAAG--LD 286
Query: 725 PHQFFRKVLDLGSER 739
Q K+++LG R
Sbjct: 287 FPQLIAKLMELGLAR 301
>gi|28199733|ref|NP_780047.1| D-alanine--D-alanine ligase [Xylella fastidiosa Temecula1]
gi|32129484|sp|Q87AG1.1|DDL_XYLFT RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|28057854|gb|AAO29696.1| D-alanine--D-alanine ligase B [Xylella fastidiosa Temecula1]
Length = 304
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 84/304 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS---LALN----HLA 476
VF +HG G GEDG +Q L++A GVPYTG V+ S MDKV T LAL A
Sbjct: 58 VFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYA 117
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L V +VR+ ++L P++ +KPA++G S GV+R+ E
Sbjct: 118 SLSVCATAVEVRKAVEMLGFPVI----------------IKPAKEGSSVGVSRVFALEH- 160
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE + +R G L+ E +E D
Sbjct: 161 ------LEEAVALA-----ARYEGE----------LLMEQLIEGD--------------- 184
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TV ++ + +PS+ + G K+ + P +
Sbjct: 185 ----------ELTVSILDEMA-----LPSIRIVPQGQWYDYNAKYLAEDTQYVCPGLDDV 229
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
E ++ L A +++ G+ R+D +G ++EVNT PGMT + L+ +
Sbjct: 230 AEAEI-----AQLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHS-LVPK 283
Query: 716 ALSE 719
A S+
Sbjct: 284 AASQ 287
>gi|171057215|ref|YP_001789564.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
gi|170774660|gb|ACB32799.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
Length = 329
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 132/322 (40%), Gaps = 73/322 (22%)
Query: 387 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 446
L +G+ H+ FD A+ E +L E A FIA+HG GEDGT+Q LE
Sbjct: 38 LSQGVDAHA----FDPAE--------RELAELKHEGYARCFIALHGRHGEDGTVQGALEL 85
Query: 447 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 506
G+PYTG GVMAS MDKV T LA+ G+ T +D + + EL
Sbjct: 86 LGIPYTGSGVMASAIAMDKVMTKRIW--LAE-GLPTPRYVWLASDDQGAERVGRVSAELG 142
Query: 507 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 566
L VKP R+G S GV ++ A + V + S +
Sbjct: 143 -----LPLIVKPPREGSSIGVTKVVEAAQVGAAV-------------ALSAGY------- 177
Query: 567 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 626
++ E F+E + E+T V+G+ G+ +P +
Sbjct: 178 --DADVLCEAFIEGE-------------------------ELTCPVLGE-GAHAVALPVI 209
Query: 627 TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRID 685
+ + K+ L P S +S E L++ QRI L + AL G+ R D
Sbjct: 210 RIVPPAAGYDYQNKYFTDEVQYLCP---SGLSAE-LEREIQRITLASYRALGCRGWGRAD 265
Query: 686 AFVNVDNGEVLIIEVNTVPGMT 707
+ + + ++E+NT PGMT
Sbjct: 266 LMLRAGDQQPFLLEMNTSPGMT 287
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFTAIVLDVG 98
++VKP R GSSIGVT V+++ + + L G D V+ E F+E G E T VL G
Sbjct: 145 LIVKPPREGSSIGVTK---VVEAAQVGAAVALSAGYDADVLCEAFIE-GEELTCPVLGEG 200
Query: 99 SGFDCHPVV-LLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
+ PV+ ++P A ++Y+ KY T +V Y P +
Sbjct: 201 AHAVALPVIRIVPPA---------------AGYDYQNKYF-TDEVQYLCPSGLSAELERE 244
Query: 158 IREGASLLFQRLGLCDFARID 178
I+ ++ LG + R D
Sbjct: 245 IQRITLASYRALGCRGWGRAD 265
>gi|431766624|ref|ZP_19555094.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E4215]
gi|430625710|gb|ELB62319.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E4215]
Length = 309
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 61 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 120
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 121 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 153
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 154 ------------------------------------DELDYAIESARQYDSKILIEQAVS 177
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 178 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 233
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 234 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 279
>gi|384264051|ref|YP_005419758.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385263591|ref|ZP_10041678.1| D-alanyl-alanine synthetase A [Bacillus sp. 5B6]
gi|421732894|ref|ZP_16172010.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429503964|ref|YP_007185148.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|452854493|ref|YP_007496176.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|380497404|emb|CCG48442.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385148087|gb|EIF12024.1| D-alanyl-alanine synthetase A [Bacillus sp. 5B6]
gi|407073255|gb|EKE46252.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429485554|gb|AFZ89478.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|452078753|emb|CCP20504.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 361
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q LLE VPY G GV+AS MDKV + HL A G+
Sbjct: 97 VFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKV----IMKHLFAQAGLPQAK 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K+D +TP D + + VKPA G S G+++ E+L KA
Sbjct: 153 YAAFLKKDWKQTP--DSCLQQVEEELGYPCFVKPANLGSSVGISKCRNREELE---KA-- 205
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
FE E D + + A R
Sbjct: 206 -----------------------------FELAFEYDRKIVVEEGI---AGR-------- 225
Query: 605 WVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI +GV+G KC ++ + P D + K++ G + PA + +
Sbjct: 226 --EIEIGVLGNDEPKCSAVGEIAPKT------DFYDYKAKYEDGDTDLMI--PAQVTDEQ 275
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + I+ A+ G R D F+ D G+VLI EVNT+PG TP ++
Sbjct: 276 YAEISEMAIKAF-KAIDGSGLVRADFFLTND-GQVLINEVNTMPGFTPFSMF 325
>gi|348026413|ref|YP_004766218.1| D-alanine--D-alanine ligase [Megasphaera elsdenii DSM 20460]
gi|341822467|emb|CCC73391.1| D-alanine--D-alanine ligase [Megasphaera elsdenii DSM 20460]
Length = 312
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 127/338 (37%), Gaps = 101/338 (29%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQAT---------VFIAVHGGIGEDGTLQSLLEAEG 448
TG IAD L + E ++L + A VF A+HG GEDG +Q L E G
Sbjct: 26 TGAAIADALTKKGYHIEMMELVPKEFAKTLTEKGIDIVFNALHGRYGEDGVIQGLCEMMG 85
Query: 449 VPYTGPGVMASKTCMDKVATSLALN-----------HLADLGVLTINKDVRRKEDLLKTP 497
+PYTGPGVMAS M+KV + A + A I D+ ++ DL P
Sbjct: 86 IPYTGPGVMASAVGMNKVMSKAAFQGAGIATAPFAYYFATQDRDAIVSDIEQRFDL---P 142
Query: 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSR 557
+V +K + G S G + ++L ALEE +S
Sbjct: 143 VV----------------IKSSGQGSSIGTVIVQTKDELR---PALEEAF------KYSA 177
Query: 558 AHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 617
+ L+ E F++ D E TV V+
Sbjct: 178 S-------------LVAEAFIDGD-------------------------EFTVAVMDDVA 199
Query: 618 SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 677
P + + S K+ G +L P P S T K+ +L N
Sbjct: 200 -----FPVIQIVSSTGKYDFYSKYAPGVAKHLCPAPISPELT------KEMQDLALNVFH 248
Query: 678 L---EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
L G SR+D + G ++E+NTVPGMT ++++
Sbjct: 249 LCHCSGVSRVDIMTD-KEGHPFVLEINTVPGMTATSLV 285
>gi|373115455|ref|ZP_09529628.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 7_1_58FAA]
gi|371670398|gb|EHO35480.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 7_1_58FAA]
Length = 349
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 116/298 (38%), Gaps = 82/298 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL------- 478
VF+A+HG GEDG +Q+ + G+PYTG G + S MDK L +AD+
Sbjct: 101 VFLALHGTCGEDGRVQAAFDLMGIPYTGAGYLGSAIAMDK---DLTKRMVADVVSTPGWK 157
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
V D+ R + + P+V VKP G S GV+ AE+L
Sbjct: 158 TVTYTAADIDRLVETARLPLV----------------VKPVASGSSIGVSIAYTAEELR- 200
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
++L E L R +
Sbjct: 201 --RSLTEGL--------------------------------------------ALGGRTV 214
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
+ R EI VG++ +PS+ + K+Q G + + P + ++
Sbjct: 215 LEEYIRGREIQVGIL-----EDKALPSIEIIPKQGFYDYANKYQPGAALEVCP---AEIT 266
Query: 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E + + + L L +SR D F+ ++GE +E+NT+PGMTP+++L +A
Sbjct: 267 PEEEARVRAAALRVYETLGLSVYSRAD-FILTEDGEPWFLEINTLPGMTPTSLLPQEA 323
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 44/206 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKA--KGIILEGIDDRVVVELFLEGGSEFTAIVLDV 97
+VVKP +GSSIGV++AY + L+++ +G+ L G R V+E ++ G I+ D
Sbjct: 177 LVVKPVASGSSIGVSIAY-TAEELRRSLTEGLALGG---RTVLEEYIRGREIQVGILEDK 232
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
LP S+++ K ++Y KY P + P
Sbjct: 233 A----------LP---------SIEIIPKQGFYDYANKYQPGAALEV-CPAEITPEEEAR 272
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+R A +++ LGL ++R D + TE G F +IN + GM
Sbjct: 273 VRAAALRVYETLGLSVYSRAD-----------------FILTEDGEPWFLEINTLPGMTP 315
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHA 243
TS L Q+A+ G ++ + + I+ HA
Sbjct: 316 TSLLPQEAAAAGIDYNELCQRIV-HA 340
>gi|334129342|ref|ZP_08503147.1| D-alanylalanine synthetase B [Methyloversatilis universalis FAM5]
gi|333445568|gb|EGK73509.1| D-alanylalanine synthetase B [Methyloversatilis universalis FAM5]
Length = 308
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ FIA+HG GEDGTLQ LE G+PYTG GVMAS MDK T +
Sbjct: 56 ELKRDGYDRAFIALHGRGGEDGTLQGALECMGIPYTGSGVMASAIGMDKWRTKMVWLSAG 115
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLC 531
L TP + H + L VKPAR+G S G ++
Sbjct: 116 -----------------LPTPRYKLLHAGSDFAAVANDLGLPLFVKPAREGSSVGATKVT 158
Query: 532 CAEDLTVYVKALEEC 546
AEDL + C
Sbjct: 159 RAEDLAAAYEKAARC 173
>gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 375
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 122/294 (41%), Gaps = 60/294 (20%)
Query: 416 IKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH 474
+ L++++ VF + HG +GEDGT+Q LL PY G GV+ S DK T L
Sbjct: 88 LNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSGVLGSAMSFDKDITKKILK- 146
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
LA GV T R E L + ++ S K L VKPA G S G+ ++ ++
Sbjct: 147 LA--GVATT-----RYELLTPLTVEKYSYDSLSAELGKILFVKPANQGSSVGIHKVETSD 199
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
D Y +A+ + R + + E +E E
Sbjct: 200 D---YDEAIRDAF---------RYDNKV----------LVEEAIEGPE------------ 225
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
E+ + V+G + S + S+ V + + KF + + P
Sbjct: 226 ------------ELEISVLGNHHPIASKVGSIKVPADDAFYTYDNKFVDASQVKFDVP-- 271
Query: 655 SIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ EAL K ++ L + AL L+G +RID V+ D+ E + EVNT+PG T
Sbjct: 272 -VDIPEALSKELTKMALDSYRALGLKGMARIDFLVSQDS-EPYVSEVNTLPGFT 323
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 38 GKVV-VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
GK++ VKP GSS+G+ D + + D++V+VE +EG E VL
Sbjct: 176 GKILFVKPANQGSSVGIHKVETSDDYDEAIRDAFR--YDNKVLVEEAIEGPEELEISVLG 233
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ HP+ ++V GS+ V DA + Y K++ QV + P P +
Sbjct: 234 -----NHHPIA---SKV-----GSIKVPADDAFYTYDNKFVDASQVKFDVPVDIPEALSK 280
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+ + A ++ LGL ARID FL V SE +++N + G
Sbjct: 281 ELTKMALDSYRALGLKGMARID--FL-----VSQDSEP----------YVSEVNTLPGFT 323
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHACSRF 247
S Q + G S+ ++ +I A +
Sbjct: 324 NISLYPQLFAASGISYRELIDRLIQLANEEY 354
>gi|308172324|ref|YP_003919029.1| D-alanine--D-alanine ligase [Bacillus amyloliquefaciens DSM 7]
gi|384158047|ref|YP_005540120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208]
gi|384162852|ref|YP_005544231.1| D-alanine--D-alanine ligase [Bacillus amyloliquefaciens LL3]
gi|384167073|ref|YP_005548451.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens XH7]
gi|307605188|emb|CBI41559.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7]
gi|328552135|gb|AEB22627.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208]
gi|328910407|gb|AEB62003.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens LL3]
gi|341826352|gb|AEK87603.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens XH7]
Length = 361
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q LLE VPY G GV+AS MDKV + HL A G+
Sbjct: 97 VFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKV----IMKHLFAQAGLPQAK 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K+D +TP D + + VKPA G S G+++ E+L KA
Sbjct: 153 YAAFLKKDWKQTP--DSCLQQVEEELGYPCFVKPANLGSSVGISKCRNREELE---KA-- 205
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
FE E D + + A R
Sbjct: 206 -----------------------------FELAFEYDRKIVVEEGI---AGR-------- 225
Query: 605 WVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI +GV+G KC ++ + P D + K++ G + PA + +
Sbjct: 226 --EIEIGVLGNDEPKCSAVGEIAPKT------DFYDYKAKYEDGDTDLMI--PAQVTDEQ 275
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + I+ A+ G R D F+ D G+VLI EVNT+PG TP ++
Sbjct: 276 YAEISEMAIKAF-KAIDGSGLVRADFFLTND-GQVLINEVNTMPGFTPFSMF 325
>gi|394994545|ref|ZP_10387259.1| D-alanyl-alanine synthetase A [Bacillus sp. 916]
gi|393804645|gb|EJD66050.1| D-alanyl-alanine synthetase A [Bacillus sp. 916]
Length = 361
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 118/292 (40%), Gaps = 68/292 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTIN 484
VF +HG GEDGT+Q LLE VPY G GV+AS MDKV + HL A G+
Sbjct: 97 VFPLLHGPNGEDGTIQGLLELLNVPYVGNGVLASSAGMDKV----IMKHLFAQAGLPQAK 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
K+D +TP D + + VKPA G S G+++ E+L KA
Sbjct: 153 YAAFLKKDWKQTP--DSCLQQVEEELGYPCFVKPANLGSSVGISKCRNREELE---KA-- 205
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
FE E D + + A R
Sbjct: 206 -----------------------------FELAFEYDRKIVVEEGI---AGR-------- 225
Query: 605 WVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI +GV+G KC ++ + P D + K++ G + PA + +
Sbjct: 226 --EIEIGVLGNDEPKCSAVGEIAPKT------DFYDYKAKYEDGDTDLMI--PAQVTDEQ 275
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + I+ A+ G R D F+ D G+VLI EVNT+PG TP ++
Sbjct: 276 YAEISEMAIKAF-KAIDGSGLVRADFFLTND-GQVLINEVNTMPGFTPFSMF 325
>gi|388569359|ref|ZP_10155757.1| d-alanine--d-alanine ligase [Hydrogenophaga sp. PBC]
gi|388263414|gb|EIK89006.1| d-alanine--d-alanine ligase [Hydrogenophaga sp. PBC]
Length = 312
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 117/304 (38%), Gaps = 81/304 (26%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 472
E +L +E A FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 49 REMGELKREGFARCFIALHGRFGEDGTVQGALELLGIPYTGPGVMASAVAMDKLMT---- 104
Query: 473 NHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCS 524
K + E L TP W ++ S + + VKP R+G +
Sbjct: 105 ------------KRIWLAEG-LATP---AWRQVRSAADTRAAFEALGSPMIVKPVREGST 148
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G+ + V ++C A+ + +P +++ E F+ D
Sbjct: 149 IGLTK----------VMGADQC---------EAAYALAAKQDP---MVMCEQFIAGD--- 183
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 644
E+T V+G G MP + + + K+
Sbjct: 184 ----------------------EVTCPVLGT-GESARAMPVIRIVAPEGNYDYQNKYFTD 220
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703
L P E + Q + L A L G++R D ++ + ++E+NT
Sbjct: 221 DTQYLVP----CGLPEGEEAAIQALVLKAFRTLDCRGWARADVMIDAATRKPWLLEINTS 276
Query: 704 PGMT 707
PGMT
Sbjct: 277 PGMT 280
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 38/206 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP R GS+IG+T G D + A + + D V+ E F+ G E T VL G
Sbjct: 138 MIVKPVREGSTIGLTKVMGA-DQCEAAYALAAKQ-DPMVMCEQFI-AGDEVTCPVLGTGE 194
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV + + + ++Y+ KY T Y P P
Sbjct: 195 SARAMPV--------------IRIVAPEGNYDYQNKYF-TDDTQYLVPCGLP-------- 231
Query: 160 EGASLLFQRLGLCDFARID--GWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
EG Q L L F +D GW + V + T+ W +IN GM
Sbjct: 232 EGEEAAIQALVLKAFRTLDCRGW---ARADVMIDAATR---KPW----LLEINTSPGMTG 281
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHA 243
S + A G S+ ++ ++ A
Sbjct: 282 HSLVPMSARAAGISYEDLCVQLLATA 307
>gi|379726993|ref|YP_005319178.1| D-alanine--D-alanine ligase [Melissococcus plutonius DAT561]
gi|376317896|dbj|BAL61683.1| D-alanine--D-alanine ligase [Melissococcus plutonius DAT561]
Length = 356
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 133/337 (39%), Gaps = 94/337 (27%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV 480
E A VF +HG GEDGT+Q LE G+PY G GV+AS T MDK+ T L +
Sbjct: 88 EKDAIVFPVLHGPNGEDGTIQGFLETIGMPYVGTGVLASATAMDKIMTKYLLQTVG---- 143
Query: 481 LTINKDVRRKEDLLKTPIVDI----WHELTSKL--QCK-----TLCVKPARDGCSTGVAR 529
+ +TP V + W + +L +C+ + VKPA G S G+++
Sbjct: 144 ------------IPQTPYVPVLKNEWKNDSKQLFERCEGTLLYPMFVKPANLGSSVGISK 191
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
+ E+L KALE
Sbjct: 192 VENREELQ---KALELAY------------------------------------------ 206
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
K R++ + EI V ++G + + +P VK + D + K+ I++
Sbjct: 207 --KYDSRVIVEQGIEAREIEVAILGN-EDVRTTLPGEVVK-NVDFYDYQAKYVDNQ-ISM 261
Query: 650 TPP---PASIMSTEALDKCKQRIELIANA---LQLEGFSRIDAFVNVDNGEVLIIEVNTV 703
P PA + C+Q E A L G SR D F+ N E+ + E+NT+
Sbjct: 262 QIPAELPAEV--------CRQAQEYAKKAYKTLDGSGLSRCDFFLTNKN-ELFLNELNTM 312
Query: 704 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
PG T + ++ +L E + +++ LG RF
Sbjct: 313 PGFTEFS--MYPSLWENMGLKYSDLIEELIQLGLNRF 347
>gi|71731940|gb|EAO33997.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. sandyi
Ann-1]
Length = 320
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 123/304 (40%), Gaps = 84/304 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS---LALN----HLA 476
VF +HG G GEDG +Q L++A GVPYTG V+ S MDKV T LAL A
Sbjct: 74 VFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYA 133
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L V +VR+ ++L P++ +KPA++G S GV+R+ E
Sbjct: 134 SLSVCATAVEVRKAVEMLGFPVI----------------IKPAKEGSSVGVSRVFALEH- 176
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE + +R G L+ E +E D
Sbjct: 177 ------LEEAVALA-----ARYEGE----------LLMEQLIEGD--------------- 200
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TV ++ + +PS+ + G K+ + P +
Sbjct: 201 ----------ELTVSILDEMA-----LPSIRIVPQGQWYDYNAKYLAEDTQYVCPGLDDV 245
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
E ++ L A +++ G+ R+D +G ++EVNT PGMT + L+ +
Sbjct: 246 AEAEI-----AQLALAAFHSVGCRGWGRVDVMREHGSGRFFLLEVNTAPGMTTHS-LVPK 299
Query: 716 ALSE 719
A S+
Sbjct: 300 AASQ 303
>gi|455651584|gb|EMF30310.1| D-alanyl-alanine synthetase A [Streptomyces gancidicus BKS 13-15]
Length = 385
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 141/353 (39%), Gaps = 72/353 (20%)
Query: 364 CIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQ 423
+ A EP+R A T R V+ L E + + D AD + +S + A
Sbjct: 63 ALTADEPERMAITER-RTPSVDQLAES-AEGAVVLPVDPADR-EVVYSEPGSVPKALGEV 119
Query: 424 ATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS-----KTCMDKVATSLALNHLADL 478
VF +HG GEDGTLQ LLE G+PY G GV++S K M +V TS L L
Sbjct: 120 DVVFPVLHGPYGEDGTLQGLLELSGIPYVGCGVLSSAVGQDKEYMKRVFTSFGLKVGPYL 179
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV 538
+ ++ R E + IV E L VKPAR G S G+ ++ +DL+
Sbjct: 180 --VIRPREWERDETAARGRIVGFAGE-----HGWPLFVKPARAGSSIGITKV---DDLSG 229
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
A+ E ++ +++
Sbjct: 230 LDDAIAEA--------------------------------------------QRHDPKII 245
Query: 599 WKGNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PAS 655
+ R EI GV+ + G SL + ++ E K+ I+ TP PA
Sbjct: 246 VEAALRGREIECGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKY-----IDSTPGVVPAP 300
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ E + + +E +A EG R D F+ ++GE +I E+NT+PG TP
Sbjct: 301 LTDEETAEVRRLAVEAF-DAASCEGLVRADFFLT-EDGEFVINEINTLPGFTP 351
>gi|426411489|ref|YP_007031588.1| D-alanyl-alanine synthetase A [Pseudomonas sp. UW4]
gi|426269706|gb|AFY21783.1| D-alanyl-alanine synthetase A [Pseudomonas sp. UW4]
Length = 364
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 112/474 (23%), Positives = 184/474 (38%), Gaps = 142/474 (29%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDA----NITDP 337
V +IFGG ++E +VSL S N+ + A + P L+ G+D ++ DP
Sbjct: 6 VGIIFGGRSAEHEVSLQSAKNI---VDALDRSRFEPVLI--------GIDKQGHWHLNDP 54
Query: 338 DSSSRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWF 397
S+ + P + L + E+ A+ P +A+ Q+V + L H
Sbjct: 55 -SNFLLNQENPALIALNQSNREL------AVVPGKAS------QQLVETSSQELLGH--- 98
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
D+ +F VHG +GEDG LQ LL +P+ G V+
Sbjct: 99 --VDV-----------------------IFPIVHGTLGEDGCLQGLLRMADLPFVGSDVL 133
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI---------WHELTSK 508
S CMDK I+K + R L TP V + + E+ S+
Sbjct: 134 GSAVCMDK----------------DISKRLLRDAGLAVTPFVTLTRASAARTGFAEVQSR 177
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
L L VKPA G S GV+++ D Y A+E L SF
Sbjct: 178 LGLP-LFVKPANQGSSVGVSKVT---DEAEYSAAVELAL------SFD------------ 215
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV 628
++L S + + EI V+G ++ S + V
Sbjct: 216 ------------TKVLIESAVSGR--------------EIECAVLGNEEAIASGCGEIVV 249
Query: 629 KESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRID 685
+ S + K+ T + P +S +A ++ + L A Q+ G +R+D
Sbjct: 250 RSG--FYSYDSKYIDDTAAEVVVPAN--ISVDASERIRA---LAVEAFQILGCSGLARVD 302
Query: 686 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
F+ D+GEVLI E+N++PG T + ++ L + M + ++++L E+
Sbjct: 303 VFLT-DSGEVLINEINSLPGFT--RISMYPKLWQATGMTYSELVTRLIELALEK 353
>gi|320536772|ref|ZP_08036773.1| D-ala D-ala ligase [Treponema phagedenis F0421]
gi|320146378|gb|EFW37993.1| D-ala D-ala ligase [Treponema phagedenis F0421]
Length = 368
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 127/323 (39%), Gaps = 72/323 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL---T 482
+F +HG GEDGT+Q L E +PY G GV+AS MDK T L A L ++ T
Sbjct: 98 IFPVLHGSFGEDGTIQGLFEMAELPYVGCGVLASSLSMDKEKTK-NLCQAAGLPIVPFFT 156
Query: 483 INK---DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVY 539
+ K D++ + DLL I +I EL L VKP R G S G A+D
Sbjct: 157 VRKNTWDIQSERDLL---IQEIEKELDY-----PLFVKPCRAGSSVGAG---IAKDKNEL 205
Query: 540 VKALEECLLRIPPNSFSRAHG-MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
+ EE +FS + ++E P EI
Sbjct: 206 LSRAEE--------AFSWDYKILVEACIPAREI------------------------ECS 233
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
GN + T G I S + T G IL + PA I
Sbjct: 234 VTGNETCIAYTPGEIIPSHSFYDYEAKYT-DPDGAILKI---------------PAEITD 277
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
E K + I + A L L GF+R+D F++ ++ + E+NT+PG T ++
Sbjct: 278 DER--KTIREIAMKAYKTLDLSGFARVDFFIDKKTKKIYLNEINTIPGFTSISMFPKMCA 335
Query: 718 SEQPPMYPHQFFRKVLDLGSERF 740
+ P YP +L L ERF
Sbjct: 336 ASGLP-YP-DLITLLLQLAIERF 356
>gi|430928788|ref|ZP_19485493.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E1575]
gi|430553375|gb|ELA93067.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E1575]
Length = 341
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 93 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 152
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 153 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 185
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 186 ------------------------------------DELDYAIESARQYDSKILIEQAVS 209
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 210 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 265
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 266 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 311
>gi|384515507|ref|YP_005710599.1| D-alanine--D-alanine ligase [Corynebacterium ulcerans 809]
gi|397653840|ref|YP_006494523.1| D-alanyl-alanine synthetase A [Corynebacterium ulcerans 0102]
gi|334696708|gb|AEG81505.1| D-alanine-D-alanine ligase [Corynebacterium ulcerans 809]
gi|393402796|dbj|BAM27288.1| D-alanyl-alanine synthetase A [Corynebacterium ulcerans 0102]
Length = 362
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 122/309 (39%), Gaps = 83/309 (26%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 110 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 165
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+V + D + + + + VKPAR G S G++R+ +D +
Sbjct: 166 EVILRGD-------ETLTDADKHMLGLPVFVKPARGGSSIGISRVAEWDDFDAAL----- 213
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +R H +++ + +
Sbjct: 214 --------TLAREHDT----------------------------------KVIVEAEIKG 231
Query: 606 VEITVGVIGKC-GSMHSLMPS----VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
VE+ GV+ + GS+ + +P+ V E G + K+ P P E
Sbjct: 232 VEVECGVLERADGSLIASVPAQLEDVDEGEEG-FYGFDTKYLDNVVTATIPAPFD----E 286
Query: 661 ALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
A K Q + L A AL G SR+D F+ G VL EVNT+PG TP +
Sbjct: 287 ATTKLIQSLSLEAFQALNCRGLSRVDFFITA-QGPVL-NEVNTMPGFTPIS--------- 335
Query: 720 QPPMYPHQF 728
MYP F
Sbjct: 336 ---MYPQVF 341
>gi|430832854|ref|ZP_19450878.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E0333]
gi|430479196|gb|ELA56457.1| vancomycin/teicoplanin A-type resistance protein VanA, partial
[Enterococcus faecium E0333]
Length = 307
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 59 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 118
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 119 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 151
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 152 ------------------------------------DELDYAIESARQYDSKILIEQAVS 175
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 176 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 231
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 232 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 277
>gi|418456251|ref|ZP_13027492.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418459172|ref|ZP_13030351.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|387741281|gb|EIK28137.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387741841|gb|EIK28669.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS11b]
Length = 343
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 95 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 154
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 155 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 187
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 188 ------------------------------------DELDYAIESARQYDSKILIEQAVS 211
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 212 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAFITVP--ADLSAE 267
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 268 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 313
>gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
Length = 305
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 119/301 (39%), Gaps = 90/301 (29%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L ++ FIA+HG GEDGT+Q +LE +PYTG GVM+S MDK T L +
Sbjct: 54 LLRQGFDRAFIALHGRFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVG- 112
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWH-----ELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+ +P + H E S+L L VKPAR+G + G++++
Sbjct: 113 ----------------IPSPRYVLLHSDSNFEEVSELLGLPLIVKPAREGSTIGLSKVTH 156
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
DL +P + ++ V +E +
Sbjct: 157 KNDL-------------LPAYELAAQ---------------YDALVLAEEFIVGK----- 183
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
E+TV ++G+ + +P V ++ +G++ + K+ P
Sbjct: 184 --------------ELTVAILGE-----TPLPIVRIEITGELYDYQAKYVSNDTRYFCP- 223
Query: 653 PASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGM 706
S +S E +E+ A ALQ G+ R+D + G+ +EVNT PGM
Sbjct: 224 --SGLSDEL------ELEIQAQALQAYKVLGCHGWGRVD-LILTQTGQFYFLEVNTSPGM 274
Query: 707 T 707
T
Sbjct: 275 T 275
>gi|33416270|ref|NP_878016.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus]
gi|121633839|ref|YP_976077.1| VanA protein [Enterococcus faecium]
gi|124112006|ref|YP_001019035.1| VanA protein [Enterococcus faecium]
gi|190606511|ref|YP_001974796.1| VanA protein [Enterococcus faecium]
gi|197103117|ref|YP_002128399.1| D-alanine--D-lactate ligase [Enterococcus faecium]
gi|256965577|ref|ZP_05569748.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecalis HIP11704]
gi|257891272|ref|ZP_05670925.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
faecium 1,231,410]
gi|293567293|ref|ZP_06678646.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
gi|294617750|ref|ZP_06697368.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1679]
gi|305678707|ref|YP_003864126.1| VanA [Enterococcus faecalis]
gi|313247847|ref|YP_004033009.1| vanomycin resistance [Enterococcus faecalis]
gi|410687752|ref|YP_006960580.1| VanA [Enterococcus faecalis]
gi|410688673|ref|YP_006961941.1| VanA [Enterococcus faecalis]
gi|418425999|ref|ZP_12999072.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS1]
gi|418435640|ref|ZP_13007479.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS4]
gi|418438375|ref|ZP_13010145.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418441337|ref|ZP_13013008.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418444302|ref|ZP_13015879.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS7]
gi|418447412|ref|ZP_13018864.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418450362|ref|ZP_13021729.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418453226|ref|ZP_13024540.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS10]
gi|430824403|ref|ZP_19442966.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0120]
gi|430827508|ref|ZP_19445649.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0164]
gi|430830154|ref|ZP_19448218.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0269]
gi|430837485|ref|ZP_19455452.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0680]
gi|430859898|ref|ZP_19477505.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1552]
gi|430867855|ref|ZP_19482709.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1574]
gi|431772144|ref|ZP_19560506.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1644]
gi|431774918|ref|ZP_19563215.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E2369]
gi|137441|sp|P25051.1|VANA_ENTFC RecName: Full=Vancomycin/teicoplanin A-type resistance protein
VanA; AltName: Full=D-alanine--D-lactate ligase;
AltName: Full=VanA ligase
gi|21886742|gb|AAM77885.1|AF516335_5 D-Ala-D-Lac ligase [Enterococcus faecium]
gi|43336|emb|CAA40215.1| VANA ligase [Enterococcus faecium]
gi|155042|gb|AAA65956.1| vanA [Enterococcus faecium]
gi|33390954|gb|AAQ17160.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus]
gi|110556110|dbj|BAE98129.1| vanA [Enterococcus faecalis]
gi|121490898|emb|CAL36534.1| VanA protein [Enterococcus faecium]
gi|124012108|emb|CAL90940.1| VanA protein [Enterococcus faecium]
gi|186886505|gb|ACC93633.1| VanA [Enterococcus faecium]
gi|190350281|emb|CAP62631.1| VanA protein [Enterococcus faecium]
gi|196158939|emb|CAP70014.1| VanA protein [Enterococcus faecium]
gi|256956073|gb|EEU72705.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecalis HIP11704]
gi|257827632|gb|EEV54258.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
faecium 1,231,410]
gi|283481160|emb|CAZ67071.1| VanA protein [Enterococcus faecium]
gi|291590001|gb|EFF21796.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
gi|291595996|gb|EFF27271.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1679]
gi|304324958|gb|ADM24838.1| VanA [Enterococcus faecalis]
gi|304325000|gb|ADM24879.1| VanA [Enterococcus faecalis]
gi|304325042|gb|ADM24920.1| VanA [Enterococcus faecalis]
gi|312837014|dbj|BAJ34900.1| vanomycin resistance [Enterococcus faecalis]
gi|343430001|dbj|BAK61688.1| putative VanA protein [Enterococcus cecorum]
gi|379139146|gb|AFC95874.1| VanA [Enterococcus faecium]
gi|387714583|gb|EIK02710.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS1]
gi|387722568|gb|EIK10362.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS4]
gi|387724277|gb|EIK11938.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387726395|gb|EIK13958.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387732203|gb|EIK19445.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387732877|gb|EIK20085.1| vancomycin/teicoplanin A-type resistance protein VanA
[Staphylococcus aureus subsp. aureus VRS7]
gi|387733832|gb|EIK20996.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387741093|gb|EIK27964.1| vancomycin Teicoplanin A-type resistance protein
VanA/D-alanine-D-alanine ligase [Staphylococcus aureus
subsp. aureus VRS10]
gi|430441191|gb|ELA51313.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0120]
gi|430443909|gb|ELA53833.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0164]
gi|430479070|gb|ELA56352.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0269]
gi|430487342|gb|ELA64094.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E0680]
gi|430542996|gb|ELA83082.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1552]
gi|430549815|gb|ELA89629.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1574]
gi|430632248|gb|ELB68503.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E1644]
gi|430633137|gb|ELB69319.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium E2369]
Length = 343
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 95 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 154
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 155 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 187
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 188 ------------------------------------DELDYAIESARQYDSKILIEQAVS 211
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 212 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 267
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 268 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 313
>gi|358725092|gb|AEU25608.1| D-alanine-D-lactate ligase [uncultured bacterium]
Length = 347
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 114/288 (39%), Gaps = 74/288 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVL 481
V +HG +GEDG +Q LLE G+PY G V +S CMDK +A A D +
Sbjct: 95 VLPVLHGKLGEDGAMQGLLELSGIPYVGCDVQSSAVCMDKRLAYIAARSAAIATPDFWTV 154
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T N+D+ D P+ VKPAR G S GV+++
Sbjct: 155 TANQDI--DADRFTYPVF----------------VKPARSGSSFGVSKV----------- 185
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+ E LLR +E ++ E V+ E+ + +
Sbjct: 186 SEEAALLR-----------AVESARQYDSQVVIEAAVDGSEVGCAVLGND---------- 224
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIMST 659
+++ G + + H + ++ + +G + P PA I S
Sbjct: 225 ----LDLLTGEVDRISLSHGF------------FRIHQEIEPESGSENSTPIVPADI-SP 267
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
EA ++ + + AL G +R+D F+ D G V++ EVNT PGMT
Sbjct: 268 EARSLVQETAKALYRALGCSGLARVDMFLRED-GSVVLNEVNTFPGMT 314
>gi|384227655|ref|YP_005619400.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538595|gb|AEO08572.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 310
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 68/305 (22%)
Query: 410 HSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS 469
HSI I+L KE V+I++HG GEDG++Q +L+ +PYTG G+MAS +DK T
Sbjct: 45 HSI---IQLKKEGFNKVYISLHGKGGEDGSVQGVLQYLNIPYTGSGIMASSISIDKFRTK 101
Query: 470 LALNHLADLGVLTI-NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
L G+LT + + +K+++ + + + + KL L +KP G S G+
Sbjct: 102 LL---WKSRGLLTAPDIYISKKKNI--SSLYNFIIKKILKLGFPIL-IKPNNQGSSIGIT 155
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
+ C E L + +FS ++ +ILI E F+
Sbjct: 156 IVSCFEQLDDAINI-----------AFSYSN----------DILI-EKFI---------- 183
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
KG E TV ++G ++P + + + + K+ +
Sbjct: 184 -----------KGK----EYTVPILG-----EQVLPPICISTNNNFYDYNAKYISSSTQY 223
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P + + L ++I ++A N L G RID ++ D + ++EVNT+PGMT
Sbjct: 224 FCPSGLNTIQEIEL----KKIAMLAWNTLGCSGCGRIDVILD-DTDKFWLLEVNTIPGMT 278
Query: 708 PSTVL 712
+++
Sbjct: 279 NRSLV 283
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 41/237 (17%)
Query: 4 QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSL 63
+G +T P + + N S L N F+ K+ +++KP GSSIG+T+ + L
Sbjct: 107 RGLLTAPDIYISKKK-NISSLYN-FIIKKILKLGFPILIKPNNQGSSIGITIV-SCFEQL 163
Query: 64 KKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDV 123
A I +D +++E F++ G E+T +L G P + + T
Sbjct: 164 DDAINIAFSYSND-ILIEKFIK-GKEYTVPIL----GEQVLPPICISTN----------- 206
Query: 124 REKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 183
+ ++Y KY+ + Y P + +++ A L + LG RID
Sbjct: 207 ---NNFYDYNAKYI-SSSTQYFCPSGLNTIQEIELKKIAMLAWNTLGCSGCGRID----- 257
Query: 184 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
V K+ W ++N I GM S + A ++G S ++ I+
Sbjct: 258 ----VILDDTDKF----W----LLEVNTIPGMTNRSLVPMSAKEIGISFDELVLFIL 302
>gi|406993547|gb|EKE12663.1| hypothetical protein ACD_13C00145G0012 [uncultured bacterium]
Length = 309
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 112/302 (37%), Gaps = 67/302 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN-HL 475
K+ K N FIA+HG GEDG +Q LE G+PY G GV+AS MDK +N H
Sbjct: 53 KIVKINPDIAFIALHGKYGEDGKIQGFLEVIGIPYVGSGVLASAIGMDKEIFRELMNFHK 112
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
+ K + + + KT L VKP G S GV+ A++
Sbjct: 113 VPIPEYVFLKKGEKYQSVYKT------------LGAPPYFVKPVEGGSSIGVS---PAKN 157
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L K++ L FE +
Sbjct: 158 LNELKKSMN---------------------------LAFE-----------------YDN 173
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKFQGGTGINLTPPPA 654
R++ + E T V G + +P V +K G E K+ + P
Sbjct: 174 RILVDKYIKGREFTCAVTGNDKPIA--LPVVEIKPLKGSFFDYESKYAESGSEEIVPARI 231
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
S TE + K + I GF R+D F+ D +++EVNT+PG+TP ++
Sbjct: 232 SKTLTEKIQKIALEVYRIVGC---RGFGRVD-FILKDGRTPVVLEVNTIPGLTPMSLFPK 287
Query: 715 QA 716
A
Sbjct: 288 AA 289
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 35/199 (17%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSSIGV+ A ++ LKK+ + E D+R++V+ +++ G EFT V +G
Sbjct: 141 VKPVEGGSSIGVSPAKN-LNELKKSMNLAFE-YDNRILVDKYIK-GREFTCAV----TGN 193
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
D P+ L E++ +GS F+Y KY + P R + I++
Sbjct: 194 D-KPIALPVVEIK-PLKGS--------FFDYESKYAESGSEEI-VPARISKTLTEKIQKI 242
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A +++ +G F R+D T V ++N I G+ S
Sbjct: 243 ALEVYRIVGCRGFGRVDFILKDGRTPV-----------------VLEVNTIPGLTPMSLF 285
Query: 222 FQQASKVGFSHSNILRTII 240
+ A G S+ +L II
Sbjct: 286 PKAAKAAGISYPRLLDMII 304
>gi|118586551|ref|ZP_01543993.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
oeni ATCC BAA-1163]
gi|421186691|ref|ZP_15644073.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB418]
gi|118432992|gb|EAV39716.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
oeni ATCC BAA-1163]
gi|399965495|gb|EJO00067.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB418]
Length = 377
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 127/321 (39%), Gaps = 68/321 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 483
+F +VHG +GEDGTL L +PY G G+ A DKV T + +N + + + I
Sbjct: 94 LFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVI 153
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
++ + K D W ++ +L + + VK A G S GV+R+ AE+ Y AL
Sbjct: 154 FQNDKNKPD---------WDSVSKQL-GEVVFVKAANQGSSVGVSRVANAEE---YENAL 200
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ E L+ E VE+ L + GN
Sbjct: 201 RDSFQY-------------------DEKLLVEKAVESPTEL-----------EIGLLGND 230
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP----PASIMST 659
R + +G G H SG + KF + + P PA
Sbjct: 231 RVITSPIGAHWAPGQDHG---------SG-WFDYKNKFVDNSKMKYQIPAKISPAKSKEL 280
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
E + ++ L ++GF+RID F+ +GE+ + E NT+PG T ++ L E
Sbjct: 281 ENMAVKAYKV------LGIKGFARID-FLMSKDGEIFLSEPNTLPGNTNMSLF--PILFE 331
Query: 720 QPPMYPHQFFRKVLDLGSERF 740
M Q K++ L E F
Sbjct: 332 AAGMNRSQQAEKLIQLAFEEF 352
>gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16]
gi|123133594|sp|Q0K6M6.1|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16]
Length = 327
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 68/145 (46%), Gaps = 34/145 (23%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD P S+ E LA VFIA+HG GEDGT+Q LLE GVPYTG GV+A
Sbjct: 51 GFD-----PGLQSVAE---LAAAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLA 102
Query: 459 SKTCMDKVAT-------SLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 511
S MDK AT LA A +L + D L P++
Sbjct: 103 SAMAMDKQATKRLWMTYGLATPRFA---MLHADTDFDAVAADLGLPLI------------ 147
Query: 512 KTLCVKPARDGCSTGVARLCCAEDL 536
VKPAR+G S G+ ++ A+ +
Sbjct: 148 ----VKPAREGSSIGLTKVTAADQM 168
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 41/207 (19%)
Query: 40 VVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
++VKP R GSSIG VT A + + +KA +D+ V+ E F++ G+E T ++
Sbjct: 146 LIVKPAREGSSIGLTKVTAADQMRAAFEKAA-----ALDNDVIAETFID-GAELTCPIVG 199
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G + PV + + +A ++Y+ KY T Y P V
Sbjct: 200 EGDSAEALPV--------------IRIVAPEANYDYQNKYF-TDDTQYLCPSGLDPEVER 244
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A ++ LG +AR D G ++N GM
Sbjct: 245 EVRALAVQSYRVLGCRGWARADLMLRAD-----------------GKPFLLEMNTSPGMT 287
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHA 243
S + A VG S+ + + ++ A
Sbjct: 288 GHSLVPMAARAVGISYEDFVMQVVAAA 314
>gi|262197342|ref|YP_003268551.1| D-alanine--D-alanine ligase [Haliangium ochraceum DSM 14365]
gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
Length = 333
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 115/303 (37%), Gaps = 78/303 (25%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALN 473
+ L + N FIA+HG GEDG +Q LLE G+PYTG GVMAS M+K + L+
Sbjct: 49 MALRQANIDVAFIALHGRFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLH 108
Query: 474 HLADLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529
+L +N+ DV P+V VKP +G S GV+
Sbjct: 109 NLPTPSYYVLNRVDEHDVLGCHGDFGYPVV----------------VKPLTEGSSVGVSL 152
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
E+L L C +F H ++ E FVE
Sbjct: 153 ASTPEEL------LAAC-----ERAFVFDHS-----------VVVERFVE---------- 180
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
+E++V V+ + +V V G + K+ G +
Sbjct: 181 ---------------GMEVSVAVLED-----RALGAVEVASEGPLFDYGAKYTSGATEYI 220
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
PP S + R L AL G SR+D V+ G I+EVNT+P + P
Sbjct: 221 IPPRLSPERYRGVLTQAVRAHL---ALDCSGASRVDMIVS-PTGNEYILEVNTLPALAPR 276
Query: 710 TVL 712
++L
Sbjct: 277 SLL 279
>gi|227069722|gb|ACP19236.1| ligase VanA [Enterococcus faecium]
Length = 343
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 95 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 154
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 155 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 187
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 188 ------------------------------------DELDYAIESARQYDSKILIEQAVS 211
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 212 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 267
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 268 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 313
>gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola]
Length = 306
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 75/332 (22%)
Query: 392 KKHSWFTGFDIADELPMRHSINEW---------IKLAKENQATVFIAVHGGIGEDGTLQS 442
+K S +G+ I L +R N + ++L K+ + +IA+HG GEDG++Q
Sbjct: 16 RKISIKSGYAILQSL-LRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHGTGGEDGSIQG 74
Query: 443 LLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR-RKEDLLKTPIVDI 501
+LE +PYTG G+M+S +DK T L L+ L + D+ +K+D+ K I
Sbjct: 75 ILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLS----LRVLPDIYLQKKDISKYTYSYI 130
Query: 502 WHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHG 560
++ L+ K + +KP G S G+
Sbjct: 131 LKKI---LKLKFPVVIKPNNAGSSIGIT-------------------------------- 155
Query: 561 MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 620
++ P + D I + +N KG E TV ++ K
Sbjct: 156 -----------IVNHPDLLIDSINLAFNYSNNIIIEKFLKG----TEYTVSILNK----- 195
Query: 621 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEG 680
++P + + + K+ + + P + E L K +E+ N+L +G
Sbjct: 196 KVLPPIKIITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKI---VEIAWNSLGCKG 252
Query: 681 FSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
RIDA ++ + + ++E+NT+PGMT +++
Sbjct: 253 CGRIDAILD-NKDKFWLLEINTIPGMTHRSLV 283
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 47/236 (19%)
Query: 8 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLK 64
+P LQ ++++ S ++ K+ VV+KP AGSSIG+T+ +IDS+
Sbjct: 111 VLPDIYLQKKDISKYTYS--YILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSIN 168
Query: 65 KAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR 124
A + +++E FL+ G+E+T +L+ VL P + +
Sbjct: 169 LA-----FNYSNNIIIEKFLK-GTEYTVSILN--------KKVLPP----------IKII 204
Query: 125 EKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 184
K+ ++Y KY+ + Y P +++ + + LG RID
Sbjct: 205 TKNNFYDYSSKYIES-STEYICPSGLNYQKEEELKKIVEIAWNSLGCKGCGRIDAIL--- 260
Query: 185 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
++ K+ W +IN I GM S + + K S N++ I+
Sbjct: 261 ------DNKDKF----W----LLEINTIPGMTHRSLVPMASKKYRISFVNLILKIL 302
>gi|357392044|ref|YP_004906885.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054]
gi|311898521|dbj|BAJ30929.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054]
Length = 380
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 118/280 (42%), Gaps = 57/280 (20%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 489
+HG GEDGTLQ LLE GVPY G GV+AS MDK T + LG+ V +
Sbjct: 123 LHGPWGEDGTLQGLLELSGVPYVGSGVLASAVGMDKEFTKRIIES---LGLYAGEYTVLK 179
Query: 490 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLR 549
+ E + L L VKP R G S G+ ++ +DL A+EE
Sbjct: 180 PREWESEAGRAAARERIAALGLP-LFVKPCRAGSSIGITKV---KDLADLDAAVEE---- 231
Query: 550 IPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 609
+R H P++++ E VE EI
Sbjct: 232 ------ARRHD--------PKVIV-EKGVEGR-------------------------EIE 251
Query: 610 VGVIG-KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQR 668
GV+ + G S+ V V + E K+ + + + PA + + E + +Q
Sbjct: 252 CGVLEFEDGPRASVPAEVLVDGDFEFYDFEAKYIDSSEVRI---PAELTAAEQAEIRRQA 308
Query: 669 IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+E+ + L EG +R+D F+ D G ++ EVNT+PG TP
Sbjct: 309 VEVF-DGLGCEGLARVDFFLLAD-GRWMVNEVNTMPGFTP 346
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 40/212 (18%)
Query: 42 VKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP RAGSSIG+T + D ++++A+ D +V+VE +E G E VL+
Sbjct: 205 VKPCRAGSSIGITKVKDLADLDAAVEEAR-----RHDPKVIVEKGVE-GREIECGVLE-- 256
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
F+ P +P EV G + +++ KY+ + +V P I
Sbjct: 257 --FEDGPRASVPAEV--LVDGDFE------FYDFEAKYIDSSEV--RIPAELTAAEQAEI 304
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R A +F LG AR+D + L G + ++N + G
Sbjct: 305 RRQAVEVFDGLGCEGLARVDFFLLAD-----------------GRWMVNEVNTMPGFTPI 347
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSRFPNL 250
S + G ++ ++ ++ A R L
Sbjct: 348 SAYPKMWEATGVPYAELIDRLLAAALRRSTGL 379
>gi|319764370|ref|YP_004128307.1| d-alanine/d-alanine ligase [Alicycliphilus denitrificans BC]
gi|330826589|ref|YP_004389892.1| D-alanine--D-alanine ligase [Alicycliphilus denitrificans K601]
gi|317118931|gb|ADV01420.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans BC]
gi|329311961|gb|AEB86376.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601]
Length = 322
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 81/290 (27%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T K
Sbjct: 70 FIALHGRHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT----------------KR 113
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDLTV 538
+ R E L P D W ++S + + VKP+R+G + G+ +
Sbjct: 114 IWRFEGL---PTPD-WRLVSSSAETAQAFQELGSPMIVKPSREGSTIGLTK--------- 160
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
V +L +C +A+ + + PE+L E F++ D
Sbjct: 161 -VTSLGQC---------EQAYRLAAQHD--PEVLC-EQFIDGD----------------- 190
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
E T V+G+ + +L V G+ + F T + P+ +
Sbjct: 191 --------ETTCPVLGQGDAAQALPVIRIVAPEGNYDYQNKYF---TDVTQYHCPSGL-- 237
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
EA ++ +RI + A L G++R D V + + ++E+NT PGMT
Sbjct: 238 PEAEEREIRRIVVQAYRTLGCRGWARADIMVRKSDRKPFLLEINTSPGMT 287
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GS+IG+T + ++A + + D V+ E F++ G E T VL G
Sbjct: 145 MIVKPSREGSTIGLTKVTS-LGQCEQAYRLAAQH-DPEVLCEQFID-GDETTCPVLGQGD 201
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
PV + + + ++Y+ KY T YH P P IR
Sbjct: 202 AAQALPV--------------IRIVAPEGNYDYQNKYF-TDVTQYHCPSGLPEAEEREIR 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG +AR D S F +IN GM S
Sbjct: 247 RIVVQAYRTLGCRGWARADIMVRKSDRKPF----------------LLEINTSPGMTGHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A G S+ ++ I+ A
Sbjct: 291 LVPMSAKASGISYPDLCLRILASA 314
>gi|269216512|ref|ZP_06160366.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
gi|269130041|gb|EEZ61123.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
Length = 317
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 128/303 (42%), Gaps = 73/303 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L +E+ F+A+HG GEDGT+Q LE G+PYTG G++AS ++K + A
Sbjct: 57 RLIEESFDVAFLALHGKGGEDGTVQGFLETIGLPYTGSGILASALAVNK---ARAKESYE 113
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC-----VKPARDGCSTGVARLC 531
G+L ++D L +D +C +C VKP +G S G+ +
Sbjct: 114 RAGLLVAPSVTVGRDDPLDEGFLD---------ECIDICGMPCVVKPTTEGSSLGMTIVR 164
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
A DL K +E L S +
Sbjct: 165 DATDLR---KGIETAL-----------------------------------------SVD 180
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD-ILSLEEKFQGGTGINLT 650
A M +G E+TVGV+G + +P + + + D + K+ G +L
Sbjct: 181 VEA---MIEGFIEGTELTVGVMGNDDPVA--LPVIQIVPTEDEFYNFHAKYAQGGSRHLC 235
Query: 651 PPPASIMSTEALDKCKQRIELIANA-LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P P S TE++ Q + + A++ L G SR D V+ +N ++E NT+PGMT +
Sbjct: 236 PAPLSPELTESV----QELAVAAHSVLGCRGISRTDIMVDAEN-RCWVLETNTLPGMTGT 290
Query: 710 TVL 712
+++
Sbjct: 291 SLV 293
Score = 39.3 bits (90), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 41/239 (17%)
Query: 3 KQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDS 62
+ G + PS + + L F+ +D VVKPT GSS+G+T+ D
Sbjct: 114 RAGLLVAPSVTVG----RDDPLDEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATD- 168
Query: 63 LKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD 122
L+K L +D ++E F+E G+E T V+ + ++PTE
Sbjct: 169 LRKGIETALS-VDVEAMIEGFIE-GTELTVGVMGNDDPVALPVIQIVPTE---------- 216
Query: 123 VREKDAIFNYRRKYLPTQQVAYH-TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 181
D +N+ KY Q + H P + S++E A LG +R D
Sbjct: 217 ----DEFYNFHAKY--AQGGSRHLCPAPLSPELTESVQELAVAAHSVLGCRGISRTD--- 267
Query: 182 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+ +E + W + N + GM TS + A G S + +I
Sbjct: 268 ------IMVDAENRC----W----VLETNTLPGMTGTSLVPDAARVAGMGFSRVCERLI 312
>gi|40021675|gb|AAR37060.1| VanD5 [Enterococcus faecium]
Length = 343
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDGT+Q LLE G+PY G + +S TCMDK SLA + + G+
Sbjct: 93 VVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQSSVTCMDK---SLAYMVVKNAGIEVPG 149
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
V +K D LK + + VKPAR G S GV ++C AE+L V
Sbjct: 150 FRVLQKGDSLKAETLSY-----------PVFVKPARSGSSFGVNKVCRAEELQAAV 194
>gi|431928345|ref|YP_007241379.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri RCH2]
gi|431826632|gb|AGA87749.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri RCH2]
Length = 314
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D D+L R S NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 50 GIDAGDDLLQRLS-NEPIDRA-------FIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 101
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L VL D R + L P++
Sbjct: 102 SALAMDKLRTKQVWQSLGLPTPQHAVLASEGDCRAAAETLGFPLI--------------- 146
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA--------LEECLLRIPPNSFSRAHGMIEMPN 566
VKPA +G S G+A++ +L +A L E ++ P + + HG +
Sbjct: 147 -VKPAHEGSSIGMAKVGALAELIDAWRAASSYDSQVLVEQWIQGPEFTVAVLHGQV---L 202
Query: 567 PPPEILIFEPFVETDEILFSSQSTNK 592
PP + F + D +S + +
Sbjct: 203 PPIGLGTPHSFYDYDAKYLASDTQYR 228
>gi|345429827|ref|YP_004822945.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1]
gi|301155888|emb|CBW15357.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1]
Length = 306
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 120/295 (40%), Gaps = 72/295 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + G+ +
Sbjct: 61 VFNILHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKA---FGLPVADM 117
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT----LCVKPARDGCSTGVARLCCAEDLTVYVK 541
++ KE+ +EL + + L VKP+ +G S G+ + VK
Sbjct: 118 EIVTKENA---------NELNPQAVVEKLGLPLMVKPSLEGSSVGLTK----------VK 158
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A+E E+ + L F+ + +E L
Sbjct: 159 AVE------------------ELKSAVDYALKFDNTILIEEWLAGD-------------- 186
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV V+G ++P+V + G+ + K+ P S+ +
Sbjct: 187 -----ELTVPVLG-----GEVLPAVRIVPEGEFYDYDAKYISDNTQYFCPAGLSVEREQE 236
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
L K +R + + G+SRID + G ++EVNT PGMT ++ A
Sbjct: 237 LAKLVKR---AYDVVGCRGWSRIDVMTDA-QGNFRLVEVNTNPGMTSHSLFPKSA 287
>gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|22654229|sp|O51927.2|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 306
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 75/332 (22%)
Query: 392 KKHSWFTGFDIADELPMRHSINEW---------IKLAKENQATVFIAVHGGIGEDGTLQS 442
+K S +G+ I L +R N + ++L K+ + +IA+HG GEDG++Q
Sbjct: 16 RKISIKSGYAILQSL-LRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHGTGGEDGSIQG 74
Query: 443 LLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR-RKEDLLKTPIVDI 501
+LE +PYTG G+M+S +DK T L L+ L + D+ +K+D+ K I
Sbjct: 75 ILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLS----LRVLPDIYLQKKDISKYTYSYI 130
Query: 502 WHELTSKLQCK-TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHG 560
++ L+ K + +KP G S G+
Sbjct: 131 LKKI---LKLKFPVVIKPNNAGSSIGIT-------------------------------- 155
Query: 561 MIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 620
++ P + D I + +N KG E TV ++ K
Sbjct: 156 -----------IVNHPDLLIDSINLAFNYSNNIIIEKFLKG----TEYTVSILNK----- 195
Query: 621 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEG 680
++P + + + K+ + + P + E L K +E+ N+L +G
Sbjct: 196 KVLPPIKIITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKI---VEIAWNSLGCKG 252
Query: 681 FSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
RIDA ++ + + ++E+NT+PGMT +++
Sbjct: 253 CGRIDAILD-NKDKFWLLEINTIPGMTHRSLV 283
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 47/236 (19%)
Query: 8 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLK 64
+P LQ ++++ S ++ K+ VV+KP AGSSIG+T+ +IDS+
Sbjct: 111 VLPDIYLQKKDISKYTYS--YILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSIN 168
Query: 65 KAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVR 124
A + +++E FL+ G+E+T +L+ VL P + +
Sbjct: 169 LA-----FNYSNNIIIEKFLK-GTEYTVSILN--------KKVLPP----------IKII 204
Query: 125 EKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPS 184
K+ ++Y KY+ + Y P +++ + + LG RID
Sbjct: 205 TKNNFYDYSSKYIES-STEYICPSGLNYQKEEELKKIVEIAWNSLGCKGCGRIDAIL--- 260
Query: 185 STHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
++ K+ W +IN I GM S + A +G S ++ I+
Sbjct: 261 ------DNKDKF----W----LLEINTIPGMTHRSLVPMAAKSIGISFDELILKIL 302
>gi|359432536|ref|ZP_09222911.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20652]
gi|357920835|dbj|GAA59160.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20652]
Length = 306
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 123/302 (40%), Gaps = 79/302 (26%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+ HL
Sbjct: 55 ELKELNVERVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRC----KHLF 110
Query: 477 DLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L+ V K+ T I++ + K + VKP+ +G S G+A+ A+
Sbjct: 111 KSAGLSTAPYAVVDAKKGFDATAIMN---------KFKKVMVKPSHEGSSIGMAQASTAQ 161
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+ LEE L N+F F SQ +
Sbjct: 162 E-------LEEAL----ANAFK----------------------------FDSQVLVE-- 180
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
+W+ E T+ V+G + P + + + K+Q T P
Sbjct: 181 ---------QWITGREFTITVLG-----DDVQPVIEMTTPNGFYDYQAKYQSNTTQYHCP 226
Query: 652 PPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
S T+ L Q I L A + + G+ R+DA + + G ++EVNTVPGMT +
Sbjct: 227 ADLSEQDTKYL----QAISLDAFDLVGASGWGRVDAMQD-EQGNFYLLEVNTVPGMTEKS 281
Query: 711 VL 712
++
Sbjct: 282 LV 283
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 39/202 (19%)
Query: 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
KV+VKP+ GSSIG+ A L++A + D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQA-STAQELEEALANAFK-FDSQVLVEQWIT-GREFTITVL--- 193
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D PV+ + T + ++Y+ KY + YH P +
Sbjct: 194 -GDDVQPVIEMTT--------------PNGFYDYQAKY-QSNTTQYHCPADLSEQDTKYL 237
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ + F +G + R+D E G ++N + GM +
Sbjct: 238 QAISLDAFDLVGASGWGRVDAM-----------------QDEQGNFYLLEVNTVPGMTEK 280
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A G S ++ I+
Sbjct: 281 SLVPMAAKANGASFEQLVVRIL 302
>gi|301630393|ref|XP_002944306.1| PREDICTED: d-alanine--D-alanine ligase-like [Xenopus (Silurana)
tropicalis]
Length = 334
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 116/290 (40%), Gaps = 81/290 (27%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDGT+Q LE G+PYTG GVMAS MDK+ T K
Sbjct: 74 FIALHGRHGEDGTVQGALELLGIPYTGSGVMASSIAMDKIMT----------------KR 117
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKPARDGCSTGVARLCCAEDLTV 538
+ R E L P D W + S + + VKPAR+G + G+ ++
Sbjct: 118 IWRFEGL---PTPD-WRLVASAAETAQALAALGAPMIVKPAREGSTIGLTKVTS------ 167
Query: 539 YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598
P +A+ + + PE+L E F++ D
Sbjct: 168 -------------PGQCQQAYRLAAQHD--PEVLC-EQFIDGD----------------- 194
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
E T V+G+ S +L V G+ + F T + P+ +
Sbjct: 195 --------ETTCPVLGQGASATALPVIRIVAPEGNYDYQNKYF---TDVTQYHCPSGL-- 241
Query: 659 TEALDKCKQR-IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
EA ++ QR +E L G++R D V + + ++E+NT PGMT
Sbjct: 242 PEAEERAIQRLVERAYRTLGCRGWARADIMVRASDRQPFLLEINTSPGMT 291
>gi|298489811|ref|YP_003719988.1| D-alanine--D-alanine ligase ['Nostoc azollae' 0708]
gi|298231729|gb|ADI62865.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708]
Length = 351
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 125/315 (39%), Gaps = 60/315 (19%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F +HG GEDGT+Q+LL VP+ G GV+ S T MDK+A A A G+ +
Sbjct: 92 FPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSATGMDKIAMKTA---FAQAGLPQVKYK 148
Query: 487 VRRKEDLLKTPIV--DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ + P V + E+ + L VKPA G S G+A++ ++L AL+
Sbjct: 149 ALTRAQIWSNPCVFPKLCDEIEATLGYPYF-VKPANLGSSVGIAKVQSRQELEA---ALD 204
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
++ R R++ +
Sbjct: 205 NAA------TYDR--------------------------------------RIIVEAGVV 220
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
E+ V+G S++ +T D E K+ G P + + A+ +
Sbjct: 221 AREVECAVLGNDNPKASVIGEITF--DSDFYDYETKYTQGKADLFIP---AHLPESAVQQ 275
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
+++ A+ G +R+D F GE+LI E+NT+PG T ST + Q + +
Sbjct: 276 IQEKALQAFTAVDAAGLARVDFFYVEATGEILINEINTLPGFT-STSMYPQLWANTGISF 334
Query: 725 PHQFFRKVLDLGSER 739
P + +++ L ER
Sbjct: 335 P-KLVDQLIQLAMER 348
>gi|406900765|gb|EKD43626.1| D-alanine-D-alanine ligase, partial [uncultured bacterium]
Length = 294
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 109/269 (40%), Gaps = 71/269 (26%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL-----ALNHLADLGVL 481
FIA+HG GEDG LQ +LE GVPYTGPGV++S M+KV + L L H A + +
Sbjct: 89 FIAMHGSPGEDGKLQGMLECLGVPYTGPGVLSSALGMNKVYSGLIYYSWHLPHPAFIDIT 148
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
N +KE L I D + C VKP G + GV +DL VK
Sbjct: 149 AKNWKNHKKEVL--KAIND-----SVGYPC---VVKPVDQGSAVGVFITKTEDDL---VK 195
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A+ + + + P L+ + F++
Sbjct: 196 AVAKSIKKFP-------------------WLMAQKFIKGK-------------------- 216
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP--PASIMST 659
E T GV+ K G +L P+ V + G + K+ G ++ P PA I
Sbjct: 217 -----EATCGVLEKKGEAFALPPTHIVPQLGKFYDYKSKYAEGGSKHICPADFPAEI--- 268
Query: 660 EALDKCKQRIELIAN-ALQLEGFSRIDAF 687
++ Q LIA+ AL G SR D F
Sbjct: 269 ---NQIMQDYALIAHKALNCSGMSRSDFF 294
>gi|262039022|ref|ZP_06012356.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
gi|261746932|gb|EEY34437.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
Length = 309
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 410 HSINE-WIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
+S NE + KL N V+IA+HG GEDG +Q++LE+ G+ Y GPGVM+S CMDK
Sbjct: 45 NSENEVFEKLKDLNLDFVYIALHGAFGEDGRIQAILESLGIAYGGPGVMSSSVCMDK--- 101
Query: 469 SLALNHLADLGV-LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGV 527
L +A GV + VRR E + ++ KL K + VKP G S GV
Sbjct: 102 ELTKKIVATYGVRVAKGLSVRRGE-------TADFKTISEKL-GKRIIVKPNSGGSSIGV 153
Query: 528 ARLCCAEDL 536
+ + E L
Sbjct: 154 SFVESEEQL 162
>gi|422322615|ref|ZP_16403655.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54]
gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54]
Length = 316
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 122/303 (40%), Gaps = 78/303 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 474
+LA E VFIA+HG GEDG++Q LE G+PYTG G +AS MDK T + L H
Sbjct: 52 ELAAEGFERVFIALHGRFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHG 111
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+ +L + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPEFELLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
D+ A+ + + E+L E F++ E
Sbjct: 156 YSDM-------------------KEAYALAAKFD--AEVLA-EQFIQGRE---------- 183
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 651
+TV ++G S +L P + + G E K+ P
Sbjct: 184 ---------------LTVAILGGGKSARAL-PVIEIAAPGGNYDYEHKYFSDDTQYFCPA 227
Query: 652 --PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
PPA ++ E D + AL EG+ R D ++ DN ++E+NT PGMT
Sbjct: 228 ALPPA--VAEEVADIAVRAY----RALGCEGWGRADFMLDADN-RPWLLEMNTSPGMTSH 280
Query: 710 TVL 712
+++
Sbjct: 281 SLV 283
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 37/242 (15%)
Query: 12 FLLQGSEVNESELSNWFVTNKLDPN--SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 69
+L G E EL + +L P+ S +++KP GS++G+T G D +K+A +
Sbjct: 107 WLQHGLPTPEFELLDADTELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSD-MKEAYAL 165
Query: 70 ILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAI 129
+ D V+ E F++ G E T +L G PV +++
Sbjct: 166 AAK-FDAEVLAEQFIQ-GRELTVAILGGGKSARALPV--------------IEIAAPGGN 209
Query: 130 FNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 189
++Y KY + Y P P V + + A ++ LG + R D F+ + +
Sbjct: 210 YDYEHKYF-SDDTQYFCPAALPPAVAEEVADIAVRAYRALGCEGWGRAD--FMLDADN-- 264
Query: 190 SSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 249
W ++N GM S + A G S++ + I+ A + +
Sbjct: 265 ---------RPW----LLEMNTSPGMTSHSLVPMAARATGMSYAELCVAILADASCKLHS 311
Query: 250 LA 251
A
Sbjct: 312 AA 313
>gi|375012206|ref|YP_004989194.1| D-alanine--D-alanine ligase [Owenweeksia hongkongensis DSM 17368]
gi|359348130|gb|AEV32549.1| D-alanine--D-alanine ligase [Owenweeksia hongkongensis DSM 17368]
Length = 328
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 123/296 (41%), Gaps = 71/296 (23%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGV 480
VF A+HG GEDG L E G+P T G S +K S+ L ++A
Sbjct: 77 AVFNAIHGAPGEDGPLAGYFELIGMPQTSSGQFESALTFNKAECSMLLKGQGVNIASAYY 136
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
L +++ E + + L C VKP R G S GV ++ E+L+
Sbjct: 137 LASHENYNSVEIISQV-----------GLPC---FVKPNRSGSSIGVTKVSLPEELS--- 179
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
A+E+ +FS ++T I+ M K
Sbjct: 180 PAIEK--------AFS---------------------IDTQVIV-----------EAMVK 199
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G VE+ GV G + +L + V ++ D E K+ G + +TP + +S +
Sbjct: 200 G----VEVGCGVTNHQGYIKALAATDIVPKN-DFFDYESKYSGQSE-EITP---ARISED 250
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
++ + E I +L L G +R+D VN ++G IEVNTVPG++ ++L QA
Sbjct: 251 TYNQIMEESEFIYESLNLNGLARVDYIVN-ESGVPFFIEVNTVPGLSEESILPKQA 305
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 52/237 (21%)
Query: 11 SFLLQGSEVNESELSNWFVTNKLDPNSGKVV--------VKPTRAGSSIGVTVAYGVIDS 62
S LL+G VN + S +++ + + NS +++ VKP R+GSSIGVT S
Sbjct: 121 SMLLKGQGVNIA--SAYYLASHENYNSVEIISQVGLPCFVKPNRSGSSIGVTKV-----S 173
Query: 63 LKKAKGIILE---GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQG 119
L + +E ID +V+VE ++G ++VG G H + ++
Sbjct: 174 LPEELSPAIEKAFSIDTQVIVEAMVKG--------VEVGCGVTNH-------QGYIKALA 218
Query: 120 SVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ D+ K+ F+Y KY + Q TP R N I E + +++ L L AR+D
Sbjct: 219 ATDIVPKNDFFDYESKY--SGQSEEITPARISEDTYNQIMEESEFIYESLNLNGLARVD- 275
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNIL 236
Y E G F ++N + G+ + S L +QA+ G S ++
Sbjct: 276 ----------------YIVNESGVPFFIEVNTVPGLSEESILPKQANYAGISLGDLF 316
>gi|339478587|gb|ABE95042.1| D-alanine--D-alanine ligase [Bifidobacterium breve UCC2003]
Length = 395
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 128 AVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIM 187
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
D R D+ ++ + L VKP+R G S GV ++ AEDL
Sbjct: 188 VDAR------AFTAADVVAQIEAAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 233
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP+RAGSS GVT K K LE DRV + G ++ ++ G
Sbjct: 213 VKPSRAGSSFGVT---------KVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGR 263
Query: 102 DCHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 264 EIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLE 323
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 324 DVRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFT 366
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
S + G ++ ++ +I
Sbjct: 367 PISMYPKAWDATGVGYTELITRLI 390
>gi|402829725|ref|ZP_10878598.1| D-ala D-ala ligase N-terminal domain protein [Slackia sp. CM382]
gi|402283392|gb|EJU31906.1| D-ala D-ala ligase N-terminal domain protein [Slackia sp. CM382]
Length = 317
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 128/303 (42%), Gaps = 73/303 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L +E+ F+A+HG GEDGT+Q LE G+PYTG G++AS ++K + A
Sbjct: 57 RLIEESFDVAFLALHGKGGEDGTVQGFLETIGLPYTGSGILASALAVNK---ARAKESYE 113
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC-----VKPARDGCSTGVARLC 531
G+L ++D L +D +C +C VKP +G S G+ +
Sbjct: 114 RAGLLVAPSVTVGRDDPLDEGFLD---------ECIDICGMPCVVKPTTEGSSLGMTIVR 164
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
A DL K +E L S +
Sbjct: 165 DATDLR---KGIETAL-----------------------------------------SVD 180
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD-ILSLEEKFQGGTGINLT 650
A M +G E+TVGV+G + +P + + + D + K+ G +L
Sbjct: 181 VEA---MIEGFIEGTELTVGVMGNDDPVA--LPVIQIVPTEDEFYNFHAKYAQGGSRHLC 235
Query: 651 PPPASIMSTEALDKCKQRIELIANA-LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P P S TE++ Q + + A++ L G SR D V+ +N ++E NT+PGMT +
Sbjct: 236 PAPLSPELTESV----QELAVAAHSVLGCRGISRTDIMVDAEN-RCWVLETNTLPGMTGT 290
Query: 710 TVL 712
+++
Sbjct: 291 SLV 293
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 41/239 (17%)
Query: 3 KQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDS 62
+ G + PS + + L F+ +D VVKPT GSS+G+T+ D
Sbjct: 114 RAGLLVAPSVTVG----RDDPLDEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATD- 168
Query: 63 LKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVD 122
L+K L +D ++E F+E G+E T V+ + ++PTE
Sbjct: 169 LRKGIETALS-VDVEAMIEGFIE-GTELTVGVMGNDDPVALPVIQIVPTE---------- 216
Query: 123 VREKDAIFNYRRKYLPTQQVAYH-TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWF 181
D +N+ KY Q + H P + S++E A LG +R D
Sbjct: 217 ----DEFYNFHAKY--AQGGSRHLCPAPLSPELTESVQELAVAAHSVLGCRGISRTD--- 267
Query: 182 LPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+ +E + W + N + GM TS + A G S + +I
Sbjct: 268 ------IMVDAENRC----W----VLETNTLPGMTGTSLVPDAARVAGMGFSRVCERLI 312
>gi|381400613|ref|ZP_09925537.1| D-alanine--D-alanine ligase [Kingella kingae PYKK081]
gi|380834376|gb|EIC14220.1| D-alanine--D-alanine ligase [Kingella kingae PYKK081]
Length = 307
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 116/314 (36%), Gaps = 75/314 (23%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + E +L K+ F +HG GEDGT+Q LEA GVPYTG GV+AS M
Sbjct: 38 DAHPFDPAQTELAELKKQGFDIAFNILHGTYGEDGTVQGALEALGVPYTGCGVLASALGM 97
Query: 464 DKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519
DK L + L VL N E L P L +KPA
Sbjct: 98 DKYRCKLIWSALGLPIPPFVVLHDNSHFAEVEQQLGLP----------------LFIKPA 141
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
+G S GV ++ A DL L + L HG+I
Sbjct: 142 AEGSSVGVVKVKQAGDLATEYAKLRDMGL----------HGVIL---------------- 175
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
A++ M G E T GV + +P++ + + E
Sbjct: 176 --------------AEQFMSGG-----EYTCGVFNR-----QALPTIRIIPQTEFYDYEA 211
Query: 640 KFQGGTGINLTPPPASIMSTEALDK-CKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ + L P + + +Q E I L RID F+ G + I+
Sbjct: 212 KYLRDDTVYLCPSDLNADDEARMQHLAQQAFEAIGGGNSL---GRID-FLKDSVGCLYIL 267
Query: 699 EVNTVPGMTPSTVL 712
E NT+PGMT +++
Sbjct: 268 EANTLPGMTSHSLI 281
>gi|14719503|pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
Length = 343
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 95 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 154
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 155 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 187
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 188 ------------------------------------DELDYAIESARQYDSKILIEQAVS 211
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 212 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 267
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ ++ I L G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 268 ERGRIQETVKKIYKTLGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 313
>gi|157369008|ref|YP_001476997.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
gi|157320772|gb|ABV39869.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
Length = 306
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 129/328 (39%), Gaps = 81/328 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK T + +
Sbjct: 49 QLKEHGFTKVFIALHGRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ + ++ K ++ L L VKP+R+G S G++++ + L
Sbjct: 109 LPVAPYVALNRKQYAGAEKATLIARVEAL-----GLPLIVKPSREGSSVGMSKVTERDAL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
ALEE F D++L
Sbjct: 164 EA---ALEEG------------------------------FRHDDDVLV----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G ++PS+ ++ +G + K+ P
Sbjct: 180 ------EKWLSGPEYTVAMLGD-----QVLPSIRIQPAGVFYDYQAKYISDDTQYFCPSG 228
Query: 654 ASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+Q E+ A AL+ G+ R+D + D G ++EVNT PGMT
Sbjct: 229 LG---------AQQEAEMAALALRAYRGLDCSGWGRVDVMQDSD-GSFYLLEVNTSPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q + Q ++L+L
Sbjct: 279 SHSLVPMAA--RQSGLSFSQLVARILEL 304
>gi|337290595|ref|YP_004629616.1| D-alanine--D-alanine ligase [Corynebacterium ulcerans BR-AD22]
gi|334698901|gb|AEG83697.1| D-alanine-D-alanine ligase [Corynebacterium ulcerans BR-AD22]
Length = 362
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 123/311 (39%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F A+HG GEDGT+Q + E G+PY G GV++S MDK T LA G L + K
Sbjct: 110 IFPALHGRFGEDGTIQGMFELSGIPYVGTGVLSSACGMDKEYTK---KLLAAEG-LPVGK 165
Query: 486 DV--RRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+V R E L+ + + + VKPAR G S G++R+ +D +
Sbjct: 166 EVILRGDETLI---------DADKHMLGLPVFVKPARGGSSIGISRVAEWDDFDAAL--- 213
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ +R H +++ +
Sbjct: 214 ----------TLAREHDT----------------------------------KVIVEAEI 229
Query: 604 RWVEITVGVIGKC-GSMHSLMPS----VTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658
+ VE+ GV+ + GS+ + +P+ V E G + K+ P P
Sbjct: 230 KGVEVECGVLERADGSLIASVPAQLEDVDEGEEG-FYGFDTKYLDNVVTATIPAPFD--- 285
Query: 659 TEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
EA K Q + L A AL G SR+D F+ G VL EVNT+PG TP +
Sbjct: 286 -EATTKLIQSLSLEAFQALNCRGLSRVDFFITA-QGPVL-NEVNTMPGFTPIS------- 335
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 336 -----MYPQVF 341
>gi|254362460|ref|ZP_04978568.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
gi|452746002|ref|ZP_21945834.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype 6 str.
H23]
gi|153094052|gb|EDN74964.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
gi|452086141|gb|EME02532.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype 6 str.
H23]
Length = 303
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 120/296 (40%), Gaps = 67/296 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L N
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T + V ++ + + ++ +KL VK + +G S GV ++ E+L
Sbjct: 110 -VGLPTADMVVVQRGQAVD------FDQIIAKLGLPVF-VKSSCEGSSVGVFKVKTKEEL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ E L F+ V +E L
Sbjct: 162 APAIH----------------------------EALKFDSIVLVEEFL------------ 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
GN V + G ++P+V V G+ K+ + P
Sbjct: 182 ---AGNEYSVPVLDG---------QVLPAVQVIPDGEFYDYHAKYVSDNTQYVVPA---- 225
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ E + + ++ + + G+SRID + G+ ++EVNT PGMT ++
Sbjct: 226 LNDERQAEVAKLVKAAYDVVGCRGWSRIDVMED-GEGKFRLVEVNTNPGMTSHSIF 280
>gi|309385870|gb|ADO66795.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
faecium]
Length = 359
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--LADLGVLTIN 484
F A+HG GEDG++Q L E G+P+ G + +S CMDK T + + +A IN
Sbjct: 111 FSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVIN 170
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
KD R P+ VKPAR G S GV ++ A
Sbjct: 171 KDDRPVAATFTYPVF----------------VKPARSGSSFGVKKVNSA----------- 203
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
DE+ ++ +S + +++ +
Sbjct: 204 ------------------------------------DELDYAIESARQYDSKILIEQAVS 227
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQ---GGTGINLTPPPASIMSTE 660
E+ V+G ++ ++ V ++ I + ++ + G +T P + +S E
Sbjct: 228 GCEVGCAVLGNSAAL--VVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP--ADLSAE 283
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ + I AL G +R+D F+ DNG +++ EVNT+PG T
Sbjct: 284 ERGRIQETAKKIYKALGCRGLARVDMFLQ-DNGRIVLNEVNTLPGFT 329
>gi|373465696|ref|ZP_09557148.1| D-ala D-ala ligase protein [Lactobacillus kisonensis F0435]
gi|371759549|gb|EHO48266.1| D-ala D-ala ligase protein [Lactobacillus kisonensis F0435]
Length = 378
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 70/311 (22%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 462
D L ++ + I L++ VF + HG +GEDGT+Q LL PY G GV+ S
Sbjct: 76 DRLDQKNPLAPIINLSEVANIDVFFPIIHGNLGEDGTIQGLLRLLQKPYVGTGVLGSAMS 135
Query: 463 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD---IWHELTSKLQCKTLCVKPA 519
DK T L LA GV T +V TP+ + +L+ +L +TL VKPA
Sbjct: 136 FDKDITKKIL-QLA--GVTTTRYEVV-------TPMTSEQFTYQQLSDEL-GETLFVKPA 184
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G S G+ ++ ED Y + + + +S IE P
Sbjct: 185 NQGSSVGIHKVENEED---YREGIRDAFRY---DSKVLVEEAIEGPE------------- 225
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
E+ + V+G + S + ++ V +S + +
Sbjct: 226 ---------------------------ELEISVLGNHHPIVSKVGAIKVPKSDAFYTYDN 258
Query: 640 KFQGGTGINLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
KF + + P PAS+ +E + K AL L+G +RID V+ D G+
Sbjct: 259 KFVDASHVEFDVPVDIPASL--SEEITKMGLA---TYQALGLKGMARIDYLVSQD-GKPY 312
Query: 697 IIEVNTVPGMT 707
+ EVNT+PG T
Sbjct: 313 VSEVNTLPGFT 323
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 47/231 (20%)
Query: 25 SNWFVTNKLDPNSGKVV-VKPTRAGSSIGV-------TVAYGVIDSLKKAKGIILEGIDD 76
S F +L G+ + VKP GSS+G+ G+ D+ + D
Sbjct: 163 SEQFTYQQLSDELGETLFVKPANQGSSVGIHKVENEEDYREGIRDAFR---------YDS 213
Query: 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY 136
+V+VE +EG E VL + HP+V ++V G++ V + DA + Y K+
Sbjct: 214 KVLVEEAIEGPEELEISVLG-----NHHPIV---SKV-----GAIKVPKSDAFYTYDNKF 260
Query: 137 LPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKY 196
+ V + P P + I + +Q LGL ARID Y
Sbjct: 261 VDASHVEFDVPVDIPASLSEEITKMGLATYQALGLKGMARID-----------------Y 303
Query: 197 GSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 247
++ G +++N + G S Q + G S++ ++ +I A +
Sbjct: 304 LVSQDGKPYVSEVNTLPGFTNISLYPQLFAASGISYTELIDRLIQLAIEEY 354
>gi|90407786|ref|ZP_01215964.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
gi|90311146|gb|EAS39253.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
Length = 307
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 124/305 (40%), Gaps = 72/305 (23%)
Query: 412 INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA 471
I++ +L + FI +HG GEDGT+Q LL +PYTG V++S MDK T
Sbjct: 47 IDDVTQLKAQGFDRAFIVLHGRGGEDGTIQGLLTYLQIPYTGSDVLSSAITMDKSKTK-- 104
Query: 472 LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 531
+G+ T + K + DI EL+ T+ VKP +G S G+A++
Sbjct: 105 -QIWKSVGLPTAKYQIIIKNHYDPSQAKDILKELSG-----TVMVKPVNEGSSIGMAKVD 158
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
EDL KAL + F + ++ E ++E +E S
Sbjct: 159 NVEDLN---KALLDAF------KFDKK-------------VLLETWIEGEEYTVS----- 191
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
M G + +P++ + D + K+Q P
Sbjct: 192 ------MLSG-------------------AALPAIKMATDNDFYDYQAKYQSTETRYYCP 226
Query: 652 PPASIMSTEALDKCKQRIELIANA----LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ L+K +ANA + +G+ R+D F+ N + ++E+N+VPGMT
Sbjct: 227 CGLDDQEMQTLNK-------LANAAFSSIGCQGWGRVD-FMRDTNKQWFLLEINSVPGMT 278
Query: 708 PSTVL 712
++++
Sbjct: 279 ETSLV 283
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 52/223 (23%)
Query: 29 VTNKLDPN---------SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDR 77
+ N DP+ SG V+VKP GSSIG+ +D+++ +L+ D +
Sbjct: 121 IKNHYDPSQAKDILKELSGTVMVKPVNEGSSIGM----AKVDNVEDLNKALLDAFKFDKK 176
Query: 78 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYL 137
V++E ++E G E+T +L G+ P + + T+ + ++Y+ KY
Sbjct: 177 VLLETWIE-GEEYTVSMLS-GAAL---PAIKMATDNDF--------------YDYQAKYQ 217
Query: 138 PTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 197
T + Y+ P + ++ + A+ F +G + R+D F+ +
Sbjct: 218 ST-ETRYYCPCGLDDQEMQTLNKLANAAFSSIGCQGWGRVD--FMRDTNK---------- 264
Query: 198 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+W +IN + GM +TS + + A + G+S ++ I+
Sbjct: 265 --QW---FLLEINSVPGMTETSLVPKAAKQAGYSFEQLVLEIL 302
>gi|338997076|ref|ZP_08635781.1| D-alanine--D-alanine ligase [Halomonas sp. TD01]
gi|338766149|gb|EGP21076.1| D-alanine--D-alanine ligase [Halomonas sp. TD01]
Length = 313
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 123/303 (40%), Gaps = 72/303 (23%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
+ L + VF+A+HG GEDGTLQ LE G+PYTG GV+AS MDK T +
Sbjct: 57 VGLERLAPTAVFVALHGRGGEDGTLQGALELLGLPYTGSGVLASALGMDKQRTKQVWQAV 116
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
+ E ++ + D W + S+L + VKP +G + G++
Sbjct: 117 G----------LPTPESIMLSETSD-WSMVVSQLGLP-MMVKPVHEGSTLGIS------- 157
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
V++ E L ++ N D
Sbjct: 158 -----------------------------------------IVKSREALEAAYHEAANYD 176
Query: 596 -RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
R+M + E TV ++ + ++P++ V+ G E K+ T P
Sbjct: 177 ARVMAERFVVGEEYTVALLD-----NDVLPAIRVEVPGGFYDYEAKYIANTTQYHLPSGL 231
Query: 655 SIMSTEAL-DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 713
S + ++L + CK+ + + EG+ R+D + G+ +IEVNTVPGMT +++
Sbjct: 232 SSVDEQSLANLCKEAFDAVGG----EGWGRVDVMRDA-MGKFWLIEVNTVPGMTDHSLVP 286
Query: 714 HQA 716
A
Sbjct: 287 QAA 289
>gi|259645171|sp|C0ZXN9.1|DDL_RHOE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|226185020|dbj|BAH33124.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4]
Length = 368
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 114/252 (45%), Gaps = 58/252 (23%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
V VIFGG ++E VS +S +V NL + +V P + ++D S + + +DP S
Sbjct: 7 RVAVIFGGRSNEHSVSCVSAGSVLSNLDP-DRYDVVP--IGITVDGSWVLGS--SDPSSL 61
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
+ +LP V + T VL+A +P R +V++ F
Sbjct: 62 AISGRALPS--VDKDGTSVVLSA-----DPTR-------EGEVIS--------------F 93
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D +D + S++ VF +HG GEDGT+Q LLE GVPY GPGV+AS
Sbjct: 94 DGSDAGAVLASVD-----------VVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASA 142
Query: 461 TCMDKVATS--LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
MDK T LA L +GV + L+ I + E ++L VKP
Sbjct: 143 AGMDKEFTKKLLAAEGLP-VGVQVV----------LRPGIATLTEEQKAELGLPVF-VKP 190
Query: 519 ARDGCSTGVARL 530
AR G S G+ R+
Sbjct: 191 ARGGSSIGITRV 202
>gi|15639657|ref|NP_219107.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025895|ref|YP_001933667.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
SS14]
gi|378975302|ref|YP_005223912.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
DAL-1]
gi|384422170|ref|YP_005631529.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
str. Chicago]
gi|408502530|ref|YP_006869974.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|6014942|sp|O83676.1|DDL_TREPA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|229486020|sp|B2S3Q9.1|DDL_TREPS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|3322972|gb|AAC26568.1| D-alanine--D-alanine ligase (ddlA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018470|gb|ACD71088.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
SS14]
gi|291060036|gb|ADD72771.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
str. Chicago]
gi|374680702|gb|AEZ60992.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
DAL-1]
gi|408475893|gb|AFU66658.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 396
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 117/287 (40%), Gaps = 67/287 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE VPY G GV AS MDKV + L A L VL
Sbjct: 98 VFPVLHGSYGEDGTVQGLLEMLQVPYVGCGVCASALAMDKVKAKM-LWQAAGLPVLPF-- 154
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V ++D + + + +L ++L L VKPA+ G S G + V +A
Sbjct: 155 -VFFRKDAWRMHMQEFVAQLETRLG-YPLFVKPAQAGSSVGAS--------AVQTRA--- 201
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
P I E + DE++ + GN +
Sbjct: 202 -----------------------PLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPY 238
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
TV G+ V G EEK+ + A ++ T L+
Sbjct: 239 ---TVHGAGE------------VIAQGAFYDYEEKYADAS-------VARVLVTAPLETA 276
Query: 666 K-QRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++I +A AL L G +R+D F+ ++ GEV + EVNT+PG T
Sbjct: 277 QYEQITTLALRAYEALGLTGLARVDFFL-LETGEVYVNEVNTMPGFT 322
>gi|456062507|ref|YP_007501477.1| D-alanine--D-alanine ligase [beta proteobacterium CB]
gi|455439804|gb|AGG32742.1| D-alanine--D-alanine ligase [beta proteobacterium CB]
Length = 337
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 125/298 (41%), Gaps = 67/298 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L EN +FI++HG GEDGT+Q LLE G+PYTG GV+AS +DK+AT L
Sbjct: 74 ELVNENFDRIFISLHGRYGEDGTIQGLLELLGLPYTGSGVLASALAIDKIATKLV---WL 130
Query: 477 DLGVLTIN-KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
G+ T ++++ D W + L L VKPA +G S G+ +
Sbjct: 131 SSGLSTPEFQELKADSD---------WDAVVKHLGL-PLIVKPAHEGSSLGLTK------ 174
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
VK++EE P ++ A GM + +I E + DE+ +A+
Sbjct: 175 ----VKSVEEL-----PAAYQLAAGMDKK-------VIAETCIVGDELTCPLVGFGADAE 218
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
L + + P S E K+ T +L P
Sbjct: 219 ALP-------------------VIKIIPPEANYDFHNKYFSDETKYLCPT--DLAP---- 253
Query: 656 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++ Q + L A AL + + R D ++ G+ ++E+NT PGMT +++
Sbjct: 254 -----EVNAAVQELALAAYRALGCKTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLV 306
>gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 377
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 108 AVFPVLHGVYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGIPTAPGIM 167
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
D R ++ E+ L VKP+R G S GV ++ A+D
Sbjct: 168 VDARHATGE------SVYDEVKKAKLAYPLFVKPSRAGSSFGVTKVEQADD 212
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 32/245 (13%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
++ G T P ++ + + KL + + VKP+RAGSS GVT
Sbjct: 155 LNAAGIPTAPGIMVDARHATGESVYDEVKKAKL---AYPLFVKPSRAGSSFGVTKVEQAD 211
Query: 61 DSLKKAKGIILEGI-----DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL 115
D + + D +V+VE ++ E VL G + P P E+ L
Sbjct: 212 DEQAQIAALEAAVAEAGKHDWKVLVEQGID-AREIECAVLCAAPGDE--PEASWPGEIVL 268
Query: 116 QFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFA 175
+ D D +++ KY+ + P P+ V+ +R+ A F + +
Sbjct: 269 DHRDQGD----DQFYDFDSKYMDSSASHVEVPANLPVSVLEDVRDVARRAFAAVDGAGLS 324
Query: 176 RIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 235
R+D + P GT++ +IN + G S + G ++ +
Sbjct: 325 RVDTFVTPD-----------------GTVMVNEINTMPGFTPISMYPKAWDASGIGYTEL 367
Query: 236 LRTII 240
+ +I
Sbjct: 368 ITRLI 372
>gi|109899818|ref|YP_663073.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
gi|122971621|sp|Q15Q19.1|DDL_PSEA6 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|109702099|gb|ABG42019.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
Length = 318
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD A+ +E +L ++ V I +HG GEDG+LQ L+ +PYTG GV+
Sbjct: 54 GFDPAE--------SELHQLVEQKFDRVLIMLHGRGGEDGSLQGALQQMNMPYTGTGVLG 105
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S CMDK+ + LG+ T N ++ K D DI L + VKP
Sbjct: 106 SALCMDKIRSKQVWQ---SLGLPTANYEIADKRDFNAANCSDIMSRLG-----DLVMVKP 157
Query: 519 ARDGCSTGVARL 530
A++G S G+A++
Sbjct: 158 AQEGSSIGMAKV 169
>gi|397670088|ref|YP_006511623.1| D-alanine--D-alanine ligase [Propionibacterium propionicum F0230a]
gi|395143445|gb|AFN47552.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
propionicum F0230a]
Length = 370
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 123/318 (38%), Gaps = 62/318 (19%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q + E G+ Y GPGV+AS MDK LA L +
Sbjct: 106 VFAPLHGPYGEDGTIQGMFEMMGIRYVGPGVLASAVGMDKHFMKLAFEAAG----LPVGP 161
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V E L+ + E+ + VKPAR G S G+ R+
Sbjct: 162 YVVASERRLRLERKAVLAEVAG--LGFPVFVKPARGGSSIGITRVT-------------- 205
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
P+ A + E P+++ + FV T
Sbjct: 206 -----DPSGLEDA--IAEAQRHDPKVIFEQGFVGTR------------------------ 234
Query: 606 VEITVGVIGKCGS----MHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+ V V+G GS S++ + V++ K+ G L P + + E
Sbjct: 235 -ELEVAVLGDPGSPEGCRASVVGEIRVQDGDGFYDFATKYLDDDGAALDAPART--TPEL 291
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ ++ NAL EG R D F D + I EVNT+PG T + ++ AL +
Sbjct: 292 AARLRELACRAFNALDAEGLVRADFFATED--QAWINEVNTMPGFT--RISMYPALWQAS 347
Query: 722 PMYPHQFFRKVLDLGSER 739
+ + ++++L ER
Sbjct: 348 GIPYPELVTRLIELALER 365
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 30/185 (16%)
Query: 40 VVVKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL- 95
V VKP R GSSIG+T G+ D++ +A + D +V+ E G E VL
Sbjct: 188 VFVKPARGGSSIGITRVTDPSGLEDAIAEA-----QRHDPKVIFEQGFVGTRELEVAVLG 242
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
D GS C V+ G + V++ D +++ KYL A P R +
Sbjct: 243 DPGSPEGCRASVV----------GEIRVQDGDGFYDFATKYLDDDGAALDAPARTTPELA 292
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTIL-FTDINLISG 214
+RE A F L R D F ++E + E T+ FT I++
Sbjct: 293 ARLRELACRAFNALDAEGLVRAD----------FFATEDQAWINEVNTMPGFTRISMYPA 342
Query: 215 MEQTS 219
+ Q S
Sbjct: 343 LWQAS 347
>gi|116490730|ref|YP_810274.1| D-alanyl-alanine synthetase A [Oenococcus oeni PSU-1]
gi|290890150|ref|ZP_06553232.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
gi|419757725|ref|ZP_14284053.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB304]
gi|419857371|ref|ZP_14380080.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB202]
gi|419859110|ref|ZP_14381766.1| D-alanine--D-alanine ligase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184122|ref|ZP_15641548.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB318]
gi|421187669|ref|ZP_15645017.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB419]
gi|421189902|ref|ZP_15647210.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB422]
gi|421191082|ref|ZP_15648365.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB548]
gi|421193900|ref|ZP_15651141.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB553]
gi|421194626|ref|ZP_15651844.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB568]
gi|421196571|ref|ZP_15653754.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB576]
gi|122277086|sp|Q04G13.1|DDL_OENOB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|116091455|gb|ABJ56609.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1]
gi|290480194|gb|EFD88836.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
gi|399905542|gb|EJN92982.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB304]
gi|399967506|gb|EJO01986.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB419]
gi|399967918|gb|EJO02376.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB318]
gi|399971113|gb|EJO05402.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB553]
gi|399971558|gb|EJO05799.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB422]
gi|399973269|gb|EJO07445.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB548]
gi|399976554|gb|EJO10568.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB576]
gi|399977331|gb|EJO11312.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB568]
gi|410497130|gb|EKP88606.1| D-alanine--D-alanine ligase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410498114|gb|EKP89575.1| D-alanine--D-alanine ligase [Oenococcus oeni AWRIB202]
Length = 377
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 127/321 (39%), Gaps = 68/321 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLADLGVLTI 483
+F +VHG +GEDGTL L +PY G G+ A DKV T + +N + + + I
Sbjct: 94 LFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVI 153
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
++ + K D W ++ +L + + VK A G S GV+R+ AE+ Y AL
Sbjct: 154 FQNDKNKPD---------WDSVSKQL-GEVVFVKAANQGSSVGVSRVTNAEE---YENAL 200
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
+ E L+ E VE+ L + GN
Sbjct: 201 RDSFQY-------------------DEKLLVEKAVESPTEL-----------EIGLLGND 230
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP----PASIMST 659
R + +G G H SG + KF + + P PA
Sbjct: 231 RVITSPIGAHWAPGQDHG---------SG-WFDYKNKFVDNSKMKYQIPAKISPAKSKEL 280
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSE 719
E + ++ L ++GF+RID F+ +GE+ + E NT+PG T ++ L E
Sbjct: 281 ENMAVKAYKV------LGIKGFARID-FLMSKDGEIFLSEPNTLPGNTNMSLF--PILFE 331
Query: 720 QPPMYPHQFFRKVLDLGSERF 740
M Q K++ L E F
Sbjct: 332 AAGMNRSQQAEKLIQLAFEEF 352
>gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
Length = 311
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 139/356 (39%), Gaps = 102/356 (28%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFDIA+++ I+LA F+A+HG GEDGT+Q LLE +PYTG GV+A
Sbjct: 43 GFDIAEQIKQHQ-----IELA-------FLALHGKYGEDGTIQGLLELLDIPYTGSGVLA 90
Query: 459 SKTCMDKVATS---------------LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH 503
S ++K+ T + N +++LG ++ ++ DL+ P V
Sbjct: 91 SAIAINKITTKKLFKLEGIPTPDFTVITRNEVSNLG---LDHACKKALDLVGLPAV---- 143
Query: 504 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIE 563
VK G + G++ + AE + A+EE L
Sbjct: 144 ------------VKANTQGSTIGISFVHQAEQMGA---AIEESL---------------- 172
Query: 564 MPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 623
+ D L+ K S +E+T V+G + +
Sbjct: 173 ---------------------------KYDQDVLVEKFIS-GMEVTASVLGNQDPVA--L 202
Query: 624 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSR 683
P + + + + K+ G ++ PP + E +K KQ L G R
Sbjct: 203 PLIEITSVTGVYDYQAKYTPGISDHIIPPR---LPEETQNKIKQLAVKAFQVLGCRGLGR 259
Query: 684 IDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
+D V EV +EVNT+PGMT +T L A +P Q K++ L E+
Sbjct: 260 VDFMVQ--GSEVYALEVNTLPGMT-ATSLFPDAARYAGMEFP-QLVDKLVKLALEK 311
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 38/218 (17%)
Query: 7 ITVPSFLLQGSEVNESELSNWFVTNK----LDPNSGKVVVKPTRAGSSIGVTVAYGVIDS 62
I P F + + +E+SN + + LD VVK GS+IG++ +
Sbjct: 109 IPTPDFTV----ITRNEVSNLGLDHACKKALDLVGLPAVVKANTQGSTIGISFVH----Q 160
Query: 63 LKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
++ I E + D V+VE F+ G E TA VL + PV L P
Sbjct: 161 AEQMGAAIEESLKYDQDVLVEKFISG-MEVTASVLG-----NQDPVAL-PL--------- 204
Query: 121 VDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+++ +++Y+ KY P ++ H PPR P N I++ A FQ LG R+D
Sbjct: 205 IEITSVTGVYDYQAKYTPG--ISDHIIPPRLPEETQNKIKQLAVKAFQVLGCRGLGRVD- 261
Query: 180 WFLPSSTHVFS-SSETKYGSTEWGTILFTDINLISGME 216
F+ + V++ T G T T LF D +GME
Sbjct: 262 -FMVQGSEVYALEVNTLPGMT--ATSLFPDAARYAGME 296
>gi|311071126|ref|YP_003976049.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
gi|419823021|ref|ZP_14346584.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus C89]
gi|310871643|gb|ADP35118.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
gi|388472828|gb|EIM09588.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus C89]
Length = 361
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 134/332 (40%), Gaps = 80/332 (24%)
Query: 419 AKENQA--TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL- 475
+KEN+A VF +HG GEDGT+Q LLE +PY G GV+AS MDKV + HL
Sbjct: 88 SKENEAIDVVFPLLHGPNGEDGTIQGLLELLNIPYVGNGVLASSAGMDKV----VMKHLF 143
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
A G+ K+D ++ + E K VKPA G S G+++ E+
Sbjct: 144 AQAGLSQAKYAAFLKKDWSRSS--EECCEQVEKELGYPCFVKPANLGSSVGISKCRSREE 201
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L KA E + R ++++ E +
Sbjct: 202 LE---KAFELAF------QYDR------------KVVVEEGVI----------------- 223
Query: 596 RLMWKGNSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
R +EI GV+G KC + + P D + K++ G + P
Sbjct: 224 -------GREIEI--GVLGNDEPKCSVVGEIAPKT------DFYDYKAKYEDGDTDLIIP 268
Query: 652 PPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
E D +I +A A+ G R D F+ D GEVLI EVNT+PG T
Sbjct: 269 -------AEVTDDQYAKISDMAIKAFKAIDGSGLVRADFFLTAD-GEVLINEVNTMPGFT 320
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
P ++ L ++ + +++DL ER
Sbjct: 321 PFSMF--PLLWKEAGIEYADLIEQLVDLAKER 350
>gi|423015710|ref|ZP_17006431.1| D-alanine--D-alanine ligase [Achromobacter xylosoxidans AXX-A]
gi|338781213|gb|EGP45606.1| D-alanine--D-alanine ligase [Achromobacter xylosoxidans AXX-A]
Length = 316
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 119/298 (39%), Gaps = 78/298 (26%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH- 474
+LA E VFIA+HG GEDG++Q LE G+PYTG G +AS MDK T + L H
Sbjct: 52 ELAAEGFERVFIALHGRFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHG 111
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+ +L + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPEFELLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
D+ ++++ A E+L E F++
Sbjct: 156 YSDMK---------------DAYALAAKF------DAEVLA-EQFIQGR----------- 182
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 651
E+TV ++G G +P + + G E K+ P
Sbjct: 183 --------------ELTVAILGG-GKTARALPVIEIAAPGGNYDYEHKYFSDDTQYFCPA 227
Query: 652 --PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
PPA ++ E D + AL EG+ R D ++ DN ++E+NT PGMT
Sbjct: 228 TLPPA--VAEEVADIAVRAY----RALGCEGWGRADFMLDADN-RPWLLEMNTSPGMT 278
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 93/242 (38%), Gaps = 37/242 (15%)
Query: 12 FLLQGSEVNESELSNWFVTNKLDPN--SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI 69
+L G E EL + +L P+ S +++KP GS++G+T G D +K A +
Sbjct: 107 WLQHGLPTPEFELLDADTELRLVPDRLSLPLIIKPPHEGSTVGITKVVGYSD-MKDAYAL 165
Query: 70 ILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAI 129
+ D V+ E F++ G E T +L G PV +++
Sbjct: 166 AAK-FDAEVLAEQFIQ-GRELTVAILGGGKTARALPV--------------IEIAAPGGN 209
Query: 130 FNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVF 189
++Y KY + Y P P V + + A ++ LG + R D F+ + +
Sbjct: 210 YDYEHKYF-SDDTQYFCPATLPPAVAEEVADIAVRAYRALGCEGWGRAD--FMLDADN-- 264
Query: 190 SSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSRFPN 249
W ++N GM S + A G S++ + I+ A + +
Sbjct: 265 ---------RPW----LLEMNTSPGMTGHSLVPMAARATGMSYAELCVAILADASCKLHS 311
Query: 250 LA 251
A
Sbjct: 312 AA 313
>gi|400975066|ref|ZP_10802297.1| D-alanine-D-alanine ligase [Salinibacterium sp. PAMC 21357]
Length = 378
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 125/317 (39%), Gaps = 65/317 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q L+E G+PY G GV+AS M+K T LAL GV
Sbjct: 120 VFPILHGPFGEDGTIQGLIELTGLPYVGNGVLASAMGMNKHFTKLALEA---AGVAVAPW 176
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ P V W + S L VKPAR G S GV ++ ++L
Sbjct: 177 VTVSAVQWQRQPAV--WRQRASSLGFPVF-VKPARAGSSVGVTKVTSPDELV-------- 225
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
N+F+ A F E L T +
Sbjct: 226 -------NAFATA------------------FAEDSTALVEQAMTGR------------- 247
Query: 606 VEITVGVI-GKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLT-PPPASIMSTEAL 662
EI GV+ G+ G + + + +G D E K+ + L P P +
Sbjct: 248 -EIECGVLSGRDGGDTRVSVAGEIVVTGRDFYDFEAKYLDVSAAELICPAPLHDGELWQM 306
Query: 663 DKCKQR-IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ R E I A G +R+D F D E ++ E+NT+PG TP + + + +
Sbjct: 307 QRTAARAFEAIGGA----GLARVDFF--FDGVEFVVNEINTLPGFTPIS-MFPKCWAASG 359
Query: 722 PMYPHQFFRKVLDLGSE 738
YP + ++++LG E
Sbjct: 360 MTYP-ELIDELIELGRE 375
>gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
Length = 305
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 124/303 (40%), Gaps = 82/303 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VF+AVHG GEDGT+Q +LE +PYTG GV+AS +DK T +
Sbjct: 52 QLIEKQIDVVFLAVHGRFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMV---- 107
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKL-QCKTL--CVKPARDGCSTGVARL 530
+D + TP +VD+ ++ + QC VKP R+G + G+A
Sbjct: 108 -------------AQDGVTTPAATLVDVNSDVDDIVAQCGHFPQVVKPVREGSTLGIAIA 154
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
A++L + + R+ + E +++ E+ S +
Sbjct: 155 NNADELKQAIAQARDYDRRV----------------------LVEDYIDGREVTVSVMN- 191
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
G+ S+ ++P ESG K+ G L
Sbjct: 192 -----------------------GRALSIIEIVP-----ESG-FYDYTAKYTVGKTRYLV 222
Query: 651 PPPASIMSTEALDKCKQRIELIANA-LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P P E+ K Q+ + + A L G +R+D V DN +EVNT+PGMT +
Sbjct: 223 PAPLP----ESQYKAIQQAAVASYASLGCRGAARVDFMVTDDN--FYFLEVNTIPGMTET 276
Query: 710 TVL 712
++L
Sbjct: 277 SLL 279
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 40/203 (19%)
Query: 41 VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSG 100
VVKP R GS++G+ +A D LK+A + D RV+VE +++G E T V++ G
Sbjct: 139 VVKPVREGSTLGIAIANNA-DELKQAIAQARD-YDRRVLVEDYIDG-REVTVSVMN---G 192
Query: 101 FDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160
+ ++P + ++Y KY + Y P P +I++
Sbjct: 193 RALSIIEIVP---------------ESGFYDYTAKY-TVGKTRYLVPAPLPESQYKAIQQ 236
Query: 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 220
A + LG AR+D F+ + + + F ++N I GM +TS
Sbjct: 237 AAVASYASLGCRGAARVD--FMVTDDNFY----------------FLEVNTIPGMTETSL 278
Query: 221 LFQQASKVGFSHSNILRTIIGHA 243
L + A+ G + ++ I+ A
Sbjct: 279 LPKAAADCGMDFAKLVEGILDDA 301
>gi|375094006|ref|ZP_09740271.1| D-alanine--D-alanine ligase [Saccharomonospora marina XMU15]
gi|374654739|gb|EHR49572.1| D-alanine--D-alanine ligase [Saccharomonospora marina XMU15]
Length = 365
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 115/297 (38%), Gaps = 81/297 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDK A LA G L + +
Sbjct: 106 VFPVLHGAFGEDGTIQGLLELAEIPYVGAGVLASAAAMDK---EYAKKLLAAEG-LPVGR 161
Query: 486 --DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC----CAEDLTVY 539
+RR + L E T + + VKPAR G S G++++ E + V
Sbjct: 162 YATIRRGQATL--------DEATRERLGLPVFVKPARAGSSIGISKVTDYSRLDEAVAVA 213
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNP------PPEILIFEPFVETDEILFSSQSTNKN 593
K + L+ G++E P+ P EI
Sbjct: 214 RKTDPKVLVEAAVVGREVECGVLEFPDGRVEASLPAEI---------------------- 251
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
R++ +G W + +G+ + DI P
Sbjct: 252 --RVLAEGQDAWYDFETKYLGEDAEL-------------DI----------------PAK 280
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
TE L C R AL +G +R+D FV D GE+ I EVNT+PG T ++
Sbjct: 281 LDDSVTERLRACAVR---AFRALDCQGLARVDFFVGSD-GELTINEVNTMPGFTTTS 333
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 32/212 (15%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGI-ILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
V VKP RAGSSIG++ V D + + + + D +V+VE + G E VL+
Sbjct: 184 VFVKPARAGSSIGIS---KVTDYSRLDEAVAVARKTDPKVLVEAAVV-GREVECGVLEFP 239
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G LP E+ + +G +DA +++ KYL + P + V +
Sbjct: 240 DG---RVEASLPAEIRVLAEG------QDAWYDFETKYL-GEDAELDIPAKLDDSVTERL 289
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R A F+ L AR+D +F+ S G + ++N + G T
Sbjct: 290 RACAVRAFRALDCQGLARVD-FFVGSD----------------GELTINEVNTMPGFTTT 332
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSRFPNL 250
S + + G + +L T++ A +R L
Sbjct: 333 SAYPKMWAVTGLDYPTLLSTLVETALARGTGL 364
>gi|295131866|ref|YP_003582529.1| D-ala D-ala ligase N-terminal domain protein, partial
[Propionibacterium acnes SK137]
gi|417930578|ref|ZP_12573953.1| D-ala D-ala ligase N-terminal-like domain protein
[Propionibacterium acnes SK182]
gi|422386760|ref|ZP_16466877.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2]
gi|422393927|ref|ZP_16473974.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1]
gi|422423941|ref|ZP_16500892.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
gi|422460976|ref|ZP_16537610.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
gi|422475636|ref|ZP_16552081.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
gi|422476205|ref|ZP_16552644.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
gi|422485046|ref|ZP_16561413.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
gi|422519772|ref|ZP_16595818.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
gi|422520260|ref|ZP_16596302.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
gi|422525339|ref|ZP_16601341.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
gi|422527790|ref|ZP_16603777.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
gi|422559586|ref|ZP_16635314.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
gi|291376332|gb|ADE00187.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
acnes SK137]
gi|313771089|gb|EFS37055.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
gi|313811746|gb|EFS49460.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
gi|313832280|gb|EFS69994.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
gi|313832740|gb|EFS70454.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
gi|314975178|gb|EFT19273.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
gi|314977587|gb|EFT21682.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
gi|314985065|gb|EFT29157.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
gi|315096927|gb|EFT68903.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
gi|327332479|gb|EGE74214.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2]
gi|327446745|gb|EGE93399.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
gi|327448814|gb|EGE95468.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
gi|328759876|gb|EGF73466.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1]
gi|340769962|gb|EGR92479.1| D-ala D-ala ligase N-terminal-like domain protein
[Propionibacterium acnes SK182]
Length = 315
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 125/303 (41%), Gaps = 72/303 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L + A VF +HGG+GE+G L +L+ G+PY G + DK S+A + +A
Sbjct: 50 LRANDGAVVFPMLHGGLGENGALLEVLQLMGIPYVGSSPATCRISFDK---SIASHAVAA 106
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC--------VKPARDGCSTGVAR 529
G++T + + P D++ EL ++ +++ VKPAR G S GV +
Sbjct: 107 AGIVTPQQ--------VALPH-DVFRELGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTK 157
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
+ +DL P + + A+ +M ++ E F+ E+ +
Sbjct: 158 VDGVDDL---------------PQAVANAYAYDDM-------VVVEEFIVGTELAIGMIT 195
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
T++ ++P+V ++ G + + GG L
Sbjct: 196 TSEGT--------------------------RVLPAVEIRPVGGVYDYSAMYTGGE-TRL 228
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
T P + +S A ++ L G SR+DA V+ ++G + +E PGMT +
Sbjct: 229 TAP--ADISDTAAQTATAMARVVQKELDFSGISRVDAIVD-ESGRPVFLEAGAAPGMTAT 285
Query: 710 TVL 712
+++
Sbjct: 286 SLV 288
>gi|27381710|ref|NP_773239.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110]
gi|27354879|dbj|BAC51864.1| bll6599 [Bradyrhizobium japonicum USDA 110]
Length = 330
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 134/331 (40%), Gaps = 78/331 (23%)
Query: 406 LPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 465
+P+ ++++ AK + + +HGG E+G LQ + EA GVP+TG G +S DK
Sbjct: 70 IPLVQALDQ----AKAEDRVLVLGLHGGCAENGELQVMCEARGVPFTGSGSASSHLAFDK 125
Query: 466 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 525
+A H A LG +T ++ + +D + + L KPARDG S
Sbjct: 126 IAA----KHFAALGGVTPPANIALDD-------ID-----AAFAEYGRLIAKPARDGSSY 169
Query: 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585
G+ + +DL A + E + EP++
Sbjct: 170 GLIFVNARQDLVAVRNAAKH------------------------EEYVIEPYIAG----- 200
Query: 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGG 644
VE T GV+ + GS+ SL P + G+ K+
Sbjct: 201 --------------------VEATCGVLERTDGSIVSLPPIEIIPGEGN-FDYAAKYLLS 239
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704
T + P + T AL KQ+ L A+ G+SR D V+ ++ +E NT+P
Sbjct: 240 TTQEICPGRFTPEITAAL---KQQAMLAHRAMSCTGYSRSDFIVSAKG--LVYLETNTLP 294
Query: 705 GMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
G+T S+ L +AL + + F R +++L
Sbjct: 295 GLTKSS-LYPKALKAEGIAFV-DFLRGLVEL 323
>gi|398819984|ref|ZP_10578525.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Bradyrhizobium sp.
YR681]
gi|398229315|gb|EJN15396.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Bradyrhizobium sp.
YR681]
Length = 330
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 131/331 (39%), Gaps = 78/331 (23%)
Query: 406 LPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 465
+P+ +++ AK + + +HGG E+G LQ + EA GVP+TG G +S DK
Sbjct: 70 IPLAQALDR----AKAEDRVLVLGLHGGRAENGELQVMCEARGVPFTGSGSASSHLAFDK 125
Query: 466 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 525
+A H A LG +T +V + DI + L KPARDG S
Sbjct: 126 IAA----KHFAALGGVTPPANV---------ALDDIDEAFA---EYGKLIAKPARDGSSY 169
Query: 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585
G+ + +DL A + E + EP++
Sbjct: 170 GLIFVNARQDLVAVRNAAKH------------------------EEYVIEPYIAG----- 200
Query: 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGG 644
VE T GV+ + GS+ SL P + G K+
Sbjct: 201 --------------------VEATCGVLERSDGSIISLPPIEIIPGEGS-FDYAAKYLLS 239
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704
T + P + T AL K++ L A+ G+SR D V+ ++ +E NT+P
Sbjct: 240 TTQEICPGRFTAEITAAL---KEQAMLAHRAMSCTGYSRSDFIVSAKG--LVYLETNTLP 294
Query: 705 GMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735
G+T S+ L +AL + + F R +++L
Sbjct: 295 GLTKSS-LYPKALKAEGIAF-DDFLRGLVEL 323
>gi|332527085|ref|ZP_08403165.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
gi|332111516|gb|EGJ11498.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
Length = 316
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 125/331 (37%), Gaps = 72/331 (21%)
Query: 385 NDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLL 444
N ++E L++ D P + E +L FIA+HG GEDGT+Q L
Sbjct: 26 NGVLEALRRAG-------VDAHPFDPAERELAELKHAGFERAFIALHGRHGEDGTVQGAL 78
Query: 445 EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHE 504
E +PYTG GVMAS MDKV T A G+ T E + +V + +
Sbjct: 79 ELLRIPYTGSGVMASAIAMDKVMTK---RIWAAEGLPTPRWAWLAPERQAREHVVAVPDQ 135
Query: 505 LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEM 564
L L VKP R+G S G+ ++ ++ VK E +
Sbjct: 136 LG-----LPLIVKPPREGSSIGITKVAGYSEMQDAVKLASEYDADV-------------- 176
Query: 565 PNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP 624
+ E F++ + E+T V+G S +L P
Sbjct: 177 --------LCEEFIDGE-------------------------EVTCAVLGDGASARAL-P 202
Query: 625 SVTVKESGDILSLEEK-FQGGTGINLTP--PPASIMSTEALDKCKQRIELIANALQLEGF 681
+ + G E K F TG + PPA + L R+ L G+
Sbjct: 203 VIRIVAPGGNYDFEHKYFSEETGYHCPSGLPPAEEAEIQRLTLAAYRL------LGCRGW 256
Query: 682 SRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
R D + + + ++E+NT PGMT +++
Sbjct: 257 GRADLMIRASDRKPFLLEMNTSPGMTSHSLV 287
>gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR]
gi|81363518|sp|Q5R0N1.1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR]
Length = 309
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 124/310 (40%), Gaps = 75/310 (24%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P HS+ E L ++ VFIA+HG GEDG++Q L+ +PYTG V+ MDKV
Sbjct: 46 PAAHSLQE---LVEQKFDRVFIALHGRGGEDGSMQGALQILEMPYTGSDVLGCALGMDKV 102
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
+ +G+ T N V + ++ + + + EL + + VKPAR+G S G
Sbjct: 103 RCKQIWH---SVGLPTANWRVVTQAEIEQVNVEAMLQELGGR-----VIVKPAREGSSIG 154
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
++ I N S A L + E D+ L
Sbjct: 155 MS---------------------IADNGRSLA-------------LALQHAAEFDDDLLV 180
Query: 587 SQSTNKNADRLMWKGNSRWV---EITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
Q WV E T+G++ GK +P + ++ + E K+Q
Sbjct: 181 EQ----------------WVEGAEYTIGILEGKA------LPVIRLQTPHEFYDFEAKYQ 218
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
P S +L +R A+ G+ RID N + GE ++E NT
Sbjct: 219 ANDTQYHCPAGLSDDDEASLRTLAER---AFAAIGGSGWGRIDVMRN-NAGEWFLLEANT 274
Query: 703 VPGMTPSTVL 712
VPGMT +++
Sbjct: 275 VPGMTEKSLV 284
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 39/228 (17%)
Query: 19 VNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRV 78
V ++E+ V L G+V+VKP R GSSIG+++A SL A E DD +
Sbjct: 121 VTQAEIEQVNVEAMLQELGGRVIVKPAREGSSIGMSIADNG-RSLALALQHAAE-FDDDL 178
Query: 79 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP 138
+VE ++E G+E+T +L+ G PV+ L T E +++ KY
Sbjct: 179 LVEQWVE-GAEYTIGILE-GKAL---PVIRLQTPHEF--------------YDFEAKY-Q 218
Query: 139 TQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGS 198
YH P S+R A F +G + RID + +
Sbjct: 219 ANDTQYHCPAGLSDDDEASLRTLAERAFAAIGGSGWGRID--------------VMRNNA 264
Query: 199 TEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
EW + N + GM + S + A G ++++ I+ R
Sbjct: 265 GEW---FLLEANTVPGMTEKSLVPMAAKVAGLQFNDLVERILAQTLER 309
>gi|384216528|ref|YP_005607694.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 6]
gi|354955427|dbj|BAL08106.1| D-alanine--D-alanine ligase B [Bradyrhizobium japonicum USDA 6]
Length = 328
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 121/301 (40%), Gaps = 72/301 (23%)
Query: 412 INEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA 471
+ + + AK + + +HGG E+G LQ + EA GVP+TG G +S DK+A
Sbjct: 70 LGQALDRAKTEGRVLVLGLHGGRAENGELQVMCEARGVPFTGSGSASSHLAFDKIAA--- 126
Query: 472 LNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 531
H A LG +T +V E I + + E L KPARDG S G+ +
Sbjct: 127 -KHFAALGGVTPPANVALDE------IDEAFAEYGR------LIAKPARDGSSYGLIFVN 173
Query: 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
+DL A + E + EP++
Sbjct: 174 ARQDLVAVRNAAKH------------------------EDYVIEPYIAG----------- 198
Query: 592 KNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
VE T GV+ + GS+ SL P + G+ K+ + +
Sbjct: 199 --------------VEATCGVLERTDGSIISLPPIEIIPGEGN-FDYAAKYLLKSTQEIC 243
Query: 651 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
P + T AL K++ L A+ G+SR D F+ D G ++ +E NT+PG+T S+
Sbjct: 244 PGRFAPEITAAL---KEQAMLAHRAMSCTGYSRSD-FIVSDRG-LIYLETNTLPGLTKSS 298
Query: 711 V 711
+
Sbjct: 299 L 299
>gi|410452640|ref|ZP_11306604.1| D-alanyl-alanine synthetase A [Bacillus bataviensis LMG 21833]
gi|409934122|gb|EKN71038.1| D-alanyl-alanine synthetase A [Bacillus bataviensis LMG 21833]
Length = 358
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 128/325 (39%), Gaps = 82/325 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F +HG GEDGT+Q LLE +PY G GV+AS MDKV + N A G+ +N
Sbjct: 94 IFPLLHGPNGEDGTVQGLLELLNLPYVGNGVLASAAGMDKV---MMKNVFAQAGLAQVNY 150
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCC--AEDLTVYV 540
K + K E +K++ + VKPA G S G+++ C AE +V
Sbjct: 151 VAFIKSEWAKAK-----EESYTKIEAELGYPCFVKPANLGSSVGISK-CTDRAELEAAFV 204
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
+A + F R +++ T +
Sbjct: 205 EAFQ----------FDR------------------------KVIVEEGVTAR-------- 222
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
EI + V+G S+ + K+ D + K++ G + P + E
Sbjct: 223 ------EIEIAVLGNDEPECSVAGEIVPKK--DFYDYKAKYEDGDTALIIPADVTEKEYE 274
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
L + R AL G R D F+ D G+ LI EVNT+PG TP ++
Sbjct: 275 QLREMAIR---AFKALDCSGLVRADFFLTKD-GKALINEVNTMPGFTPVSMF-------- 322
Query: 721 PPMYPH------QFFRKVLDLGSER 739
P ++ H Q +++DL ER
Sbjct: 323 PLLWKHTGVEYPQLIERLVDLAKER 347
>gi|392422308|ref|YP_006458912.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri CCUG 29243]
gi|390984496|gb|AFM34489.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri CCUG 29243]
Length = 314
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 28/136 (20%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D D+L R S NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 50 GIDAGDDLLQRLS-NERIDRA-------FIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 101
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L VL D + + L P++
Sbjct: 102 SALAMDKLRTKQVWQSLGLPTPQHAVLATEADCKAAAETLGFPLI--------------- 146
Query: 515 CVKPARDGCSTGVARL 530
VKPA +G S G+A++
Sbjct: 147 -VKPAHEGSSIGMAKV 161
>gi|169829744|ref|YP_001699902.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
gi|168994232|gb|ACA41772.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
Length = 364
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 129/319 (40%), Gaps = 68/319 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDKV L +A L +
Sbjct: 99 VFPLLHGTNGEDGTVQGLLEVLNLPYVGNGVLASSAGMDKVVMK-QLFEIAGLPQVPYTY 157
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+R + + I+ E K + VKPA G S G++R ++L +KA+E
Sbjct: 158 FIRSEWKNEQQTII----ERCEKRLTWPMFVKPANLGSSVGISRATNRDEL---IKAIEV 210
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L + R +I++ + +
Sbjct: 211 AL------QYDR------------KIVVEQGIIAR------------------------- 227
Query: 606 VEITVGVIGKCGSMHSLMPSVTV----KESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
EI + V+G P V+V K + + K++ G+ + P + +
Sbjct: 228 -EIELAVLGND------YPEVSVPGEIKPVTEFYDYDSKYKDGSTALIIPAELPEETESS 280
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
L + +R A+ G R D FV DN V I EVNT+PG TP V ++ L +
Sbjct: 281 LKELAKR---AFKAIDGSGLVRADFFVTADNS-VYINEVNTLPGFTP--VSMYPLLWQHT 334
Query: 722 PMYPHQFFRKVLDLGSERF 740
+ + +++ L ERF
Sbjct: 335 NVSYPELINRLITLAIERF 353
>gi|398952348|ref|ZP_10674737.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM33]
gi|398155276|gb|EJM43726.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM33]
Length = 364
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 128/324 (39%), Gaps = 80/324 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
+F VHG +GEDG LQ LL +P+ G V+ S CMDK I+
Sbjct: 101 VIFPIVHGTLGEDGCLQGLLRMADLPFVGSDVLGSAVCMDK----------------DIS 144
Query: 485 KDVRRKEDLLKTPIVDI---------WHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
K + R L TP V + + E+ S+L L VKPA G S GV+++ D
Sbjct: 145 KRLLRDAGLAVTPFVTLTRASAARTGFAEVQSRLGLP-LFVKPANQGSSVGVSKVA---D 200
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
Y A+E L SF ++L S + +
Sbjct: 201 EAEYSAAVELAL------SFD------------------------TKVLIESAVSGR--- 227
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
EI V+G ++ S + V+ S + K+ + P
Sbjct: 228 -----------EIECAVLGNEEAIASGCGEIVVRSG--FYSYDSKYIDDMAAEVVVPAN- 273
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715
+S EA ++ + L G +R+D F+ D+GEVLI E+N++PG T + ++
Sbjct: 274 -ISVEASERIRALAVEAFQVLGCSGLARVDVFLT-DSGEVLINEINSLPGFT--RISMYP 329
Query: 716 ALSEQPPMYPHQFFRKVLDLGSER 739
L + M + ++++L E+
Sbjct: 330 KLWQATGMTYSELVTRLIELALEK 353
>gi|385676292|ref|ZP_10050220.1| D-alanine--D-lactate ligase [Amycolatopsis sp. ATCC 39116]
Length = 345
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 24/116 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLT--- 482
VF +HG +GEDG +Q LLE G+PY G G+ S CMDK SLA A+ G+ T
Sbjct: 94 VFPVLHGKLGEDGAIQGLLELAGIPYVGCGIQGSAVCMDK---SLAYTVAANAGIATPRF 150
Query: 483 --INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ +D + D L P+ VKPAR G S GV+++ A++L
Sbjct: 151 WIVTEDDKVDPDSLSYPVF----------------VKPARSGSSFGVSKVTGADEL 190
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 35/218 (16%)
Query: 27 WFVT--NKLDPNS--GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVEL 82
W VT +K+DP+S V VKP R+GSS GV+ G D L A + D ++++E
Sbjct: 151 WIVTEDDKVDPDSLSYPVFVKPARSGSSFGVSKVTGA-DELPAALEDARQ-YDSKILIEA 208
Query: 83 FLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV 142
++ G E VL+ SG VV V+L G + ++D+ ++
Sbjct: 209 AVD-GEEIGCAVLEEQSGL----VVGEVDRVDLT-HGFFRIHQEDS------PETGSENA 256
Query: 143 AYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWG 202
+ P P ++E A +++ LG AR+D VF +++ G
Sbjct: 257 TFIVPADIPDASRTLVQETAKTIYRALGCTGLARVD---------VFLTAD--------G 299
Query: 203 TILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
++ ++N + GM S + + G S ++ ++
Sbjct: 300 QVVLNEVNTMPGMTSYSRYPRMMNAAGLPLSEVIDRLV 337
>gi|326792886|ref|YP_004310707.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
gi|326543650|gb|ADZ85509.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
Length = 350
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 133/326 (40%), Gaps = 77/326 (23%)
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
K N VF +HG GEDGT+Q L + +P+ G GV+AS MDK T +A+
Sbjct: 93 KINIDIVFPVLHGKNGEDGTIQGLCQLAQIPFVGCGVLASAVSMDKAFTKIAV------- 145
Query: 480 VLTINKDV-RRKEDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAED 535
K+V + + L+K P + E K++ +KPA G S G+++ E+
Sbjct: 146 ---ATKNVPQARFVLVKEPELKHMEETIKKIESAFSYPYFIKPANAGSSVGISKANNKEE 202
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
L G+ E ++LI E +
Sbjct: 203 LI---------------------SGLYEAVKHDRKVLIEETIIGR--------------- 226
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+ V+G + V G+IL+ E + N +
Sbjct: 227 -----------EVETAVMGN--------DEIVVSGVGEILAAAEFYDFDAKYN-NAESKT 266
Query: 656 IMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
++ + ++ K++I A +A++ +G SR+D FV +NGE++ E+NT+PG T ++
Sbjct: 267 VVDADLPNEIKEKIRGYAKDVFDAVEGKGLSRVDFFVK-ENGEIIFNEINTLPGFT--SI 323
Query: 712 LIHQALSEQPPMYPHQFFRKVLDLGS 737
++ L + + K+L+L S
Sbjct: 324 SMYPMLFAATGLSVKEIITKLLELAS 349
>gi|418292499|ref|ZP_12904437.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379063920|gb|EHY76663.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 314
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 85/206 (41%), Gaps = 39/206 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D D+L R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 50 GIDAGDDLLQR--------LGSERIDRAFIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 101
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L VL D + + L P++
Sbjct: 102 SALAMDKLRTKQVWQSLGLPTPQHAVLATEADCKAAANTLGFPLI--------------- 146
Query: 515 CVKPARDGCSTGVAR-------LCCAEDLTVY-VKALEECLLRIPPNSFSRAHGMIEMPN 566
VKPA +G S G+A+ + D + Y + L E ++ P + + HG +
Sbjct: 147 -VKPAHEGSSIGMAKVGELAELISAWRDASAYDSQVLVEQWIQGPEFTVAVLHGQV---L 202
Query: 567 PPPEILIFEPFVETDEILFSSQSTNK 592
PP + F + D +S + +
Sbjct: 203 PPIGLGTPHSFYDYDAKYLASDTQYR 228
>gi|251792025|ref|YP_003006745.1| D-alanine--D-alanine ligase [Aggregatibacter aphrophilus NJ8700]
gi|247533412|gb|ACS96658.1| D-alanine--D-alanine ligase B [Aggregatibacter aphrophilus NJ8700]
Length = 309
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 131/313 (41%), Gaps = 66/313 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + G+
Sbjct: 63 VFNILHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKA---FGLPVAEM 119
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
++ KE+ + + + +L L VKP+ +G S G+ ++ E+L A++
Sbjct: 120 EIVTKENRVNLNPMAVVKKLGL-----PLMVKPSLEGSSVGLTKVKAVEELE---SAVDF 171
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L F R ++ E ++ D
Sbjct: 172 AL------KFDRT-------------VLIEEWLAGD------------------------ 188
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
E TV V+ ++PS+ + G+ + K+ P + ++ E +
Sbjct: 189 -EFTVPVLD-----GEVLPSIKIVPEGEFYDYDAKYISDNTQYFCP---AGLTEEREQEL 239
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725
++ ++ + + G+SRID + + G+ ++EVNT PGMT ++ A +
Sbjct: 240 RRLVKQAYDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSF-- 296
Query: 726 HQFFRKVLDLGSE 738
Q K+L+L +E
Sbjct: 297 EQLVEKILELSAE 309
>gi|387121185|ref|YP_006287068.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase, partial
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|385875677|gb|AFI87236.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase B [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 563
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 129/320 (40%), Gaps = 74/320 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 481
VF +HG GEDGT+Q LLE GVPYTG GVM S MDK+ T + +A++ ++
Sbjct: 63 VFNILHGRGGEDGTMQGLLEQIGVPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIV 122
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T V + + KL L VKP+ +G S G+ ++ ++L V
Sbjct: 123 TTENRVNLNPE-----------SVVKKLGL-PLMVKPSLEGSSVGLTKVKSVDELESAV- 169
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
F+ L F+ V +E L
Sbjct: 170 ------------DFA---------------LKFDNTVLIEEWLAGD-------------- 188
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E TV V+ + ++PS+ + G+ + K+ P + +S E
Sbjct: 189 -----EFTVPVLD-----NEVLPSIKIVPEGEFYDYDAKYISDNTQYFCP---AGLSEER 235
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ + ++ + + G+SRID + + G+ ++EVNT PGMT ++ A +
Sbjct: 236 EQELHRLVKQAYDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGY 294
Query: 722 PMYPHQFFRKVLDLGSERFL 741
Q K+L+L +E L
Sbjct: 295 SF--AQLVEKILELSAENLL 312
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+ GSS+G+T V D L+ A L+ D+ V++E +L G EFT VLD
Sbjct: 143 LMVKPSLEGSSVGLTKVKSV-DELESAVDFALK-FDNTVLIEEWL-AGDEFTVPVLDNE- 198
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
+LP S+ + + ++Y KY+ + Y P +
Sbjct: 199 --------VLP---------SIKIVPEGEFYDYDAKYI-SDNTQYFCPAGLSEEREQELH 240
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ +G ++RID V + +E K+ E +N GM S
Sbjct: 241 RLVKQAYDVVGCRGWSRID---------VMADAEGKFRLVE--------VNTNPGMTSHS 283
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A+ VG+S + ++ I+
Sbjct: 284 LFPKSAATVGYSFAQLVEKIL 304
>gi|330501926|ref|YP_004378795.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
gi|328916212|gb|AEB57043.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
Length = 313
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 66/146 (45%), Gaps = 36/146 (24%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+ R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 49 GIDVGDDFLAR--------LNSEKIDRAFIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 100
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 513
S MDK+ T + L L TP + LTS+ CK
Sbjct: 101 SALAMDKLRTKQVWHSLG-----------------LPTPRHAV---LTSQADCKAAATEL 140
Query: 514 ---LCVKPARDGCSTGVARLCCAEDL 536
L VKPA +G S G+A++ E L
Sbjct: 141 GFPLIVKPAHEGSSIGMAKVESVEAL 166
>gi|415704054|ref|ZP_11459731.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 284V]
gi|415705772|ref|ZP_11461043.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 75712]
gi|415707457|ref|ZP_11462211.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 0288E]
gi|388050888|gb|EIK73935.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 284V]
gi|388052494|gb|EIK75518.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 75712]
gi|388053748|gb|EIK76726.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 0288E]
Length = 381
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 119/294 (40%), Gaps = 57/294 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-------ATSLALNHLAD 477
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK A + +
Sbjct: 106 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIA 165
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L V D D I++ E +KL+ L VKP+R G S GV ++ +
Sbjct: 166 LDVRKFANDCANHFDAYANEILEQVEE--AKLEY-PLFVKPSRAGSSFGVTKVESRD--- 219
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD-R 596
KAL + + + + ++ E ++ EI + + + +
Sbjct: 220 --AKALADAVFEASKHDWR---------------VLIEQGIDAREIECAVLAARDGEEPK 262
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPA 654
W G V+ K +E+G+ + K+ ++ P
Sbjct: 263 ASWPGEV--------VLDK-------------REAGEDQFYDFDSKYMDSAASHVEVP-- 299
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E L + + A G SR+D+FV + G V+I E+NT+PG TP
Sbjct: 300 ANLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTP 352
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 48/211 (22%)
Query: 42 VKPTRAGSSIGVT---------VAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFT 91
VKP+RAGSS GVT +A V ++ K +++E GID R E
Sbjct: 201 VKPSRAGSSFGVTKVESRDAKALADAVFEASKHDWRVLIEQGIDAR-----------EIE 249
Query: 92 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPR 149
VL G + P P EV L D RE +D +++ KY+ + P
Sbjct: 250 CAVLAARDGEE--PKASWPGEVVL------DKREAGEDQFYDFDSKYMDSAASHVEVPAN 301
Query: 150 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 209
P + +R A F+ +R+D + P G ++ +I
Sbjct: 302 LPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-----------------GHVMINEI 344
Query: 210 NLISGMEQTSFLFQQASKVGFSHSNILRTII 240
N + G S + G S+ +++ +I
Sbjct: 345 NTMPGFTPISMYPKAWEATGISYGDLITKLI 375
>gi|299065610|emb|CBJ36782.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
solanacearum CMR15]
Length = 331
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH-- 474
LA + V I++HG GEDGT+Q LLE G+PYTG GV+AS MDK AT L H
Sbjct: 65 LAAQGFHRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSL 124
Query: 475 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
D +L D + D L P++ VKPAR+G S G+ ++
Sbjct: 125 PTPDFVMLHAGADWQAVADRLGLPLI----------------VKPAREGSSIGLTKVTSV 168
Query: 534 EDL-TVYVKA 542
+L Y KA
Sbjct: 169 AELPAAYEKA 178
>gi|17547561|ref|NP_520963.1| D-alanine--D-alanine ligase [Ralstonia solanacearum GMI1000]
gi|39930909|sp|Q8XVI9.1|DDL_RALSO RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|17429865|emb|CAD16549.1| probable d-alanine--d-alanine ligase (d-alanylalanine
synthetase)(d-ala-d-ala ligase) protein [Ralstonia
solanacearum GMI1000]
Length = 331
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNH-- 474
LA + V I++HG GEDGT+Q LLE G+PYTG GV+AS MDK AT L H
Sbjct: 65 LAAQGFHRVVISLHGRFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSL 124
Query: 475 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
D +L D + D L P++ VKPAR+G S G+ ++
Sbjct: 125 PTPDFVMLHAGADWQAVADRLGLPLI----------------VKPAREGSSIGLTKVTSV 168
Query: 534 EDL-TVYVKA 542
+L Y KA
Sbjct: 169 AELPAAYEKA 178
>gi|402816784|ref|ZP_10866374.1| D-alanine--D-alanine ligase Ddl [Paenibacillus alvei DSM 29]
gi|402505686|gb|EJW16211.1| D-alanine--D-alanine ligase Ddl [Paenibacillus alvei DSM 29]
Length = 310
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 82/293 (27%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALN----HLADLGVLT 482
+A+HG GEDGT+Q L+ G+PYTG G+++S CM+K+ T + AD ++
Sbjct: 56 LLALHGAFGEDGTIQGTLDTLGIPYTGSGILSSSLCMNKLLTKKIVKCEGFATADWLLMQ 115
Query: 483 INK--DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
DV + L P+V +KP G S GV + AE L
Sbjct: 116 AGSAYDVDQIGAALGFPLV----------------IKPNAGGSSIGVQLVHHAESLET-- 157
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
AL+E +FS EILI E +++ DEI S +
Sbjct: 158 -ALQE--------AFSY----------DTEILI-EQYIQGDEITCS-----------ILN 186
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ-GGTGINLTPPPASIMST 659
G ++P +++K G+ K++ GG + P SI
Sbjct: 187 GQ-------------------MLPVLSIKPKGEFFDYSSKYEDGGADEVVIELPESI--- 224
Query: 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
L + ++ + A+Q ++RID ++ G +IEVNT+PG+T +++L
Sbjct: 225 --LQQVRRTALGVYKAVQCSVYARIDMILH--QGVPYVIEVNTLPGLTKNSLL 273
>gi|315652856|ref|ZP_07905829.1| D-alanine-D-alanine ligase [Lachnoanaerobaculum saburreum DSM 3986]
gi|315484887|gb|EFU75296.1| D-alanine-D-alanine ligase [Lachnoanaerobaculum saburreum DSM 3986]
Length = 349
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 135/323 (41%), Gaps = 78/323 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE +PY G GV+AS MDK+ T L ++ L
Sbjct: 95 VFPVLHGLFGEDGTVQGLLELAKIPYVGCGVLASAVGMDKLYTKLVVDKLG--------- 145
Query: 486 DVRRK--EDLLKTPIVDIWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYV 540
+R+ E +L + + + K++ + + +KP+ G S GV++ E+L
Sbjct: 146 -IRQAAYEAVLDYEVRENLSDKIEKIEGRFDYPVFIKPSNAGSSRGVSKALDREELK--- 201
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
G++E ++L+ E V
Sbjct: 202 ------------------KGILEALKHDRKVLVEETIV---------------------- 221
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
G+ E+ GV+G+ G VT G+I S + L +++ ++
Sbjct: 222 GH----EVECGVLGRPG-------DVTASGVGEIKSAATFYDYDAKYKL--DSLTLLDSK 268
Query: 661 ALDKCKQRI----ELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
D ++++ + I AL G SR+D F ++GE++ E+NT+PG T + ++
Sbjct: 269 LPDGVREKLPEYAKKIFTALDGFGLSRVDFFAR-EDGEIVFNEINTMPGFT--AISMYPM 325
Query: 717 LSEQPPMYPHQFFRKVLDLGSER 739
L E + ++++L ER
Sbjct: 326 LFEAAGIGKKDLIDRLIELAFER 348
>gi|359445159|ref|ZP_09234909.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20439]
gi|358040976|dbj|GAA71158.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20439]
Length = 306
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 119/300 (39%), Gaps = 93/300 (31%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+ K
Sbjct: 64 VFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRC----------------K 107
Query: 486 DVRRKEDLLKTP--IVDIWHELTSKL---QCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ + L P +VD +K + K + VKP+ +G S G+A+ AE+
Sbjct: 108 HLFKSAGLSTAPYAVVDAKKGFDAKAIIEEFKKVMVKPSHEGSSIGMAQASSAEE----- 162
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
LE+ L N+F F SQ +
Sbjct: 163 --LEDAL----SNAFK----------------------------FDSQVLVE-------- 180
Query: 601 GNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG-----INLTPP 652
+W+ E T+ V+G + P + + + K+Q T +L+ P
Sbjct: 181 ---QWISGREFTITVLG-----DEVQPVIEMSTPNGFYDYQAKYQSSTTQYHCPADLSQP 232
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ ALD +L+ + G+ R+DA + G+ ++EVNTVPGMT +++
Sbjct: 233 DTQKLQAMALDA----FDLVGAS----GWGRVDAMQD-QQGQFYLLEVNTVPGMTEKSLV 283
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 39/202 (19%)
Query: 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
KV+VKP+ GSSIG+ A + L+ A + D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQASSA-EELEDALSNAFK-FDSQVLVEQWIS-GREFTITVL--- 193
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G + PV+ + T + ++Y+ KY + YH P +
Sbjct: 194 -GDEVQPVIEMST--------------PNGFYDYQAKY-QSSTTQYHCPADLSQPDTQKL 237
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A F +G + R+D + G ++N + GM +
Sbjct: 238 QAMALDAFDLVGASGWGRVDAM-----------------QDQQGQFYLLEVNTVPGMTEK 280
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A G S ++ I+
Sbjct: 281 SLVPMAAKANGASFEQLVVRIL 302
>gi|408374355|ref|ZP_11172043.1| D-alanine--D-alanine ligase [Alcanivorax hongdengensis A-11-3]
gi|407765813|gb|EKF74262.1| D-alanine--D-alanine ligase [Alcanivorax hongdengensis A-11-3]
Length = 309
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 113/293 (38%), Gaps = 86/293 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
FIA+HG GEDG +Q +LE G+PYTG GVMAS MDKV T
Sbjct: 67 AFIALHGRGGEDGVIQGVLEHLGIPYTGSGVMASAIGMDKVRTKQLWKGAG--------- 117
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
L TP + + L L +KPA +G S G+A+ A++L + A ++
Sbjct: 118 --------LPTPAFYVAGRDDTDLGF-PLMIKPAHEGSSIGMAKADNADELAAALVAAKQ 168
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+AD L+ W
Sbjct: 169 F----------------------------------------------DADVLV----EAW 178
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
V E TV ++G +P++ +K E K+Q + L P +AL
Sbjct: 179 VNGPEYTVAILGD-----EALPAIRLKTPNAFYDYEAKYQSNSTEYLCPAGLDEADEQAL 233
Query: 663 DKCKQRIELIANALQL---EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
L NA ++ G+ R+D + + G ++EVNTVPGMT +++
Sbjct: 234 RT------LALNAFRVVGCRGWGRVDVMRD-EQGRWQLLEVNTVPGMTDHSLV 279
>gi|432892998|ref|ZP_20105103.1| D-alanine-D-alanine ligase A [Escherichia coli KTE165]
gi|431425450|gb|ELH07520.1| D-alanine-D-alanine ligase A [Escherichia coli KTE165]
Length = 364
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNISFV---------EVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNNNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|163789889|ref|ZP_02184325.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
gi|159874829|gb|EDP68897.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
Length = 366
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 120/300 (40%), Gaps = 82/300 (27%)
Query: 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG 479
KE A +F +HG GEDGT+Q L E +PY G GV+AS MDK+
Sbjct: 93 KEEDAVIFPVLHGPNGEDGTVQGLFEVISMPYVGAGVLASACGMDKI------------- 139
Query: 480 VLTINKDVRRKEDLLKTPIVDI----W---HELTSKLQCK-----TLCVKPARDGCSTGV 527
I+K + ++ L + P V + W E+ K QC+ + +KPA G S G+
Sbjct: 140 ---ISKQLFQQAGLPQVPYVPVRKAEWLNDKEIVFK-QCEGTLFYPMYIKPANLGSSVGI 195
Query: 528 ARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS 587
++ AE+ + A+E L + R
Sbjct: 196 SK---AENRDELIAAIELAL------RYDR------------------------------ 216
Query: 588 QSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI 647
R++ + EI V V+G +H +P VK S D E K+ +
Sbjct: 217 --------RVVVEQGIEAREIEVAVLGN-DDIHISVPGELVK-SVDFYDYESKYINNDVV 266
Query: 648 NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P +++S + + ++ AL G SR D F+ N EV I EVNT+PG T
Sbjct: 267 LQIP---ALISEDVNARLREYAVRAFQALDGSGLSRCDFFLT-SNDEVFINEVNTMPGFT 322
>gi|119383949|ref|YP_915005.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
gi|119373716|gb|ABL69309.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
Length = 301
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 136/326 (41%), Gaps = 80/326 (24%)
Query: 389 EGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEG 448
EGL K G+ +A + +R I E KL + + VF A+HG GEDG +Q LLE G
Sbjct: 28 EGLAK----AGYRVA-RVEVRDDIAE--KLLQIRPSVVFNALHGTGGEDGAVQGLLENLG 80
Query: 449 VPYTGPGVMASKTCMDKV-ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTS 507
+PYT GVMAS M K+ A +A H GV V D + ++ + + L
Sbjct: 81 IPYTHSGVMASALAMHKINAKHVAAAH----GVPVAESIVVSAADASASHVMQLPYVL-- 134
Query: 508 KLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNP 567
KP DG S GV ++
Sbjct: 135 ---------KPVADGSSCGVH--------------------------------IVRSGEA 153
Query: 568 PPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSV 626
PP++ E ++S + A+R + G E+T V+ GK + ++P
Sbjct: 154 PPQLAANE-----------AESADVMAERYV-PGR----ELTCAVLGGKALGIIEIVP-- 195
Query: 627 TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDA 686
+ G K++ G ++ P +++ + +K + E+ A+ G +R D
Sbjct: 196 ---KDGAWYDFSAKYEIGGSRHICP---AVLPPDIEEKILRYSEIAHRAIGCRGVTRSDF 249
Query: 687 FVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ D GE++ +E+NT PGMTP ++L
Sbjct: 250 RHDPDTGELIWLEINTQPGMTPISLL 275
>gi|340758436|ref|ZP_08695023.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
gi|251836781|gb|EES65315.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
Length = 288
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 119/307 (38%), Gaps = 90/307 (29%)
Query: 416 IKLAKENQATVFI---------AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
I + KEN + FI A HGG GEDG +Q LL+ G PYTG G AS MDK+
Sbjct: 38 IDVTKENLVSAFIENEYDFAYLAFHGGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKI 97
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTG 526
T LA+ + I K+ + D+ P+V +KPA +G S
Sbjct: 98 IT----KKLAESVGVRIAKNYDKVADIDSYPVV----------------IKPALEGSS-- 135
Query: 527 VARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586
V C ++R + + ++ E + +E
Sbjct: 136 VEIFFC----------------------YNREEAEKAVAELKGKKIVIEEMITGEE---- 169
Query: 587 SQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
+TVGVI G+ + ++P + E K+ G
Sbjct: 170 ---------------------LTVGVINGEGIGVLRIIP------KNEFYDYESKYAEGG 202
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705
I+ P + +A D+ + + N L L G SR D + D +V +EVNT+PG
Sbjct: 203 SIHEYPAK---IDKKAYDEALENAVKVHNVLGLAGISRSDFILKDD--KVYFLEVNTLPG 257
Query: 706 MTPSTVL 712
MT ++++
Sbjct: 258 MTKTSLI 264
>gi|255038681|ref|YP_003089302.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
gi|254951437|gb|ACT96137.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
Length = 566
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 138/320 (43%), Gaps = 44/320 (13%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
F+A+HG EDG +Q LLE +PY+GPG+M S +DK+ L + + +N
Sbjct: 108 AFLAMHGPDCEDGAIQGLLEWYKIPYSGPGLMGSAVGIDKI--------LQNDMIALVNG 159
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCK----TLCVKPARDGCSTGVARLCCAEDLTVYVK 541
++ L + V + L ++ K L K G S GVA + + L ++
Sbjct: 160 QEKKSWTLKYSQWVPRDYPLLFQVLKKHLGLPLVFKAPHQGSSIGVA-IVKDDSLEEFIA 218
Query: 542 ALEECLLRIPPN-------------SFSRAHGMIEMPNPPPEIL----IFEP--FVETDE 582
A+ +C +I ++ + ++ P IL I+ P + E
Sbjct: 219 AVNQCFFQIELTAGTWKELDEAEKLAWGQKIANLDEGIGFPVILDGKTIYHPTTLISELE 278
Query: 583 ILFSSQ------STNKNADRLMWKGNSRWVEITVGVIG-KCGSMHSLMPSVTVKESGDIL 635
I FS S++ D+++ + E + G I GS +L PS +K ++
Sbjct: 279 IYFSEGNEHALLSSSNAEDQVLVEEFVSGQEFSCGCIQFDDGSPLALPPSEVIKMV-EVF 337
Query: 636 SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEV 695
K++ G TP ++ E + +Q I L ++ RID F+ D G +
Sbjct: 338 DFNTKYKPGASRKRTPVGTTL---EKNREIQQMIAATFRQLGIDACVRIDGFLKPD-GTI 393
Query: 696 LIIEVNTVPGMTPSTVLIHQ 715
L+ + NT+PGM+P++ + Q
Sbjct: 394 LLHDPNTIPGMSPTSFIFKQ 413
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 41/205 (20%)
Query: 38 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTA--IVL 95
GK + PT S + + + G +L + +D+V+VE F+ G EF+ I
Sbjct: 264 GKTIYHPTTLISELEIYFSEGNEHALLSSSNA-----EDQVLVEEFV-SGQEFSCGCIQF 317
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
D GS P+ L P+EV + + E +F++ KY P TP +
Sbjct: 318 DDGS-----PLALPPSEV-------IKMVE---VFDFNTKYKPGASRK-RTPVGTTLEKN 361
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
I++ + F++LG+ RIDG+ P GTIL D N I GM
Sbjct: 362 REIQQMIAATFRQLGIDACVRIDGFLKPD-----------------GTILLHDPNTIPGM 404
Query: 216 EQTSFLFQQASKVGFSHSNILRTII 240
TSF+F+Q +++G + + L ++
Sbjct: 405 SPTSFIFKQMAEIGLTVTQALTYLV 429
>gi|315937072|gb|ADU56080.1| hypothetical protein CA878-2 [uncultured organism CA878]
Length = 345
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 115/287 (40%), Gaps = 70/287 (24%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA----DLGV 480
V +HG +GEDG +Q L+E G+PY G + +S CMDK T + + +
Sbjct: 92 AVLPILHGKLGEDGAMQGLMEIAGIPYAGCDIQSSALCMDKSLTYIVARSAGIATPNFWI 151
Query: 481 LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+T + D+ + L P+ VKPAR G S GV+++ E+L V
Sbjct: 152 VTADDDIDPGQ--LTYPVF----------------VKPARSGSSFGVSKVSREEELPSAV 193
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
K E ++LI E V ++ +AD
Sbjct: 194 KTAREY---------------------DSKVLIEEAVVASE---IGCAVLGNDAD----- 224
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660
+T G + + H + E + G+ + PA I E
Sbjct: 225 -------LTTGEVDRVALSHGFFK----------IHQESNPEQGSENSTFIVPADI-PDE 266
Query: 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + ++ ++I AL G +R+D F+ D G+V++ EVNT+PGMT
Sbjct: 267 SRARVQETAKVIYRALGCRGLARVDMFLKED-GQVVLNEVNTLPGMT 312
>gi|148549590|ref|YP_001269692.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
gi|395445249|ref|YP_006385502.1| D-alanine--D-alanine ligase [Pseudomonas putida ND6]
gi|397697098|ref|YP_006534981.1| D-alanine--D-alanine ligase B [Pseudomonas putida DOT-T1E]
gi|421522847|ref|ZP_15969487.1| D-alanine--D-alanine ligase [Pseudomonas putida LS46]
gi|148513648|gb|ABQ80508.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
gi|388559246|gb|AFK68387.1| D-alanine--D-alanine ligase [Pseudomonas putida ND6]
gi|397333828|gb|AFO50187.1| D-alanine--D-alanine ligase B [Pseudomonas putida DOT-T1E]
gi|402753340|gb|EJX13834.1| D-alanine--D-alanine ligase [Pseudomonas putida LS46]
Length = 318
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 30/143 (20%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GIDVGDDLLAR--------LQSEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 513
S MDK+ T L + TP + + LQ T
Sbjct: 106 SALAMDKLRTKQVWQSLG-----------------IPTPRHAVLASESDCLQASTELGFP 148
Query: 514 LCVKPARDGCSTGVARLCCAEDL 536
L VKPA +G S G+A++ A++L
Sbjct: 149 LIVKPAHEGSSIGMAKVNSAQEL 171
>gi|399002531|ref|ZP_10705217.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM18]
gi|398124971|gb|EJM14467.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM18]
Length = 318
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GIDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECAGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSCEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVTSAPELIEAWKA 177
>gi|378973177|ref|YP_005221783.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378974244|ref|YP_005222852.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378982153|ref|YP_005230460.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374677502|gb|AEZ57795.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678572|gb|AEZ58864.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679641|gb|AEZ59932.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pertenue
str. Gauthier]
Length = 396
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 117/287 (40%), Gaps = 67/287 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q LLE VPY G GV AS MDKV + L A L VL
Sbjct: 98 VFPVLHGSYGEDGTVQGLLEMLQVPYVGCGVCASALAMDKVKAKM-LWQAAGLPVLPF-- 154
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
V ++D + + + +L ++L L VKPA+ G S G + V +A
Sbjct: 155 -VFFRKDAWRMHMQEFVAQLETRLG-YPLFVKPAQAGSSVGAS--------PVQTRA--- 201
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
P I E + DE++ + GN +
Sbjct: 202 -----------------------PLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPY 238
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
TV G+ V G EEK+ + A ++ T L+
Sbjct: 239 ---TVHGAGE------------VIAQGAFYDYEEKYADAS-------VARVLVTAPLETA 276
Query: 666 K-QRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++I +A AL L G +R+D F+ ++ GEV + EVNT+PG T
Sbjct: 277 QYEQITTLALRAYEALGLTGLARVDFFL-LETGEVYVNEVNTMPGFT 322
>gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
Length = 377
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 105/284 (36%), Gaps = 63/284 (22%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
+ +HG +GEDGT+Q L + PY G G+ AS DK T LN
Sbjct: 98 YPVIHGNLGEDGTVQGLFKLLKKPYVGSGISASALSFDKDLTKKMLNEAG---------- 147
Query: 487 VRRKEDLLKTPIVDI---WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
+R +L TP W L +L + +KPAR G S G+ R+ AE+ Y AL
Sbjct: 148 IRNTPYVLLTPENQAEYSWGRLEEEL-GNLIFIKPARQGSSVGIHRVTNAEE---YAAAL 203
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
++ + L KG
Sbjct: 204 KDAF-------------------------------------------KYDFKVLAEKGLD 220
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
R EI + ++G + S + +V V + E KF +G+ P + D
Sbjct: 221 RPQEIEISILGNEHPVASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVK--LPQYLTD 278
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + L ++G SRID V+ +N L E NT+PG T
Sbjct: 279 EITEMALKAYRVLGMKGLSRIDFLVDSNNIPYL-SEPNTLPGFT 321
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 45/251 (17%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVV-VKPTRAGSSIG---VTVA 56
+++ G P LL + N++E S W +L+ G ++ +KP R GSS+G VT A
Sbjct: 143 LNEAGIRNTPYVLL--TPENQAEYS-W---GRLEEELGNLIFIKPARQGSSVGIHRVTNA 196
Query: 57 YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQ 116
+LK A D +V+ E L+ E +L + HPV
Sbjct: 197 EEYAAALKDAFKY-----DFKVLAEKGLDRPQEIEISILG-----NEHPVA--------S 238
Query: 117 FQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFAR 176
G+V V + D ++Y K++ V + P + P + + I E A ++ LG+ +R
Sbjct: 239 KLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSR 298
Query: 177 IDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNIL 236
ID FL S ++ SE +T G FT+I+L M + S G S+S+++
Sbjct: 299 ID--FLVDSNNIPYLSEP---NTLPG---FTNISLYPQMWEVS---------GISYSDLI 341
Query: 237 RTIIGHACSRF 247
+I + F
Sbjct: 342 DRLIELGLAEF 352
>gi|119478634|ref|ZP_01618537.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
gamma proteobacterium HTCC2143]
gi|119448411|gb|EAW29662.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
gamma proteobacterium HTCC2143]
Length = 313
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 120/305 (39%), Gaps = 79/305 (25%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 472
+ WIK E VFIA+HGG GE G++Q L++ V YTG GVMAS +DKV
Sbjct: 59 DSWIKTVAERYQHVFIALHGGDGEGGSVQGALDSIDVTYTGSGVMASAIALDKVRCKYLW 118
Query: 473 NHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
+ L+IN +D+++ Q + VKPA +G S G+A
Sbjct: 119 RGMELPTPSFCELSINS---HWDDIIR--------------QWGKVIVKPASEGSSIGMA 161
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
+L G E+ + ++ E +V+
Sbjct: 162 IATTGAEL----------------------KGAYEIASQYQGAVMAEQWVQG-------- 191
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
E TV ++GK +P + ++ E K+
Sbjct: 192 -----------------AEFTVAILGK-----ETLPVIRLETDHGFYDYEAKYISTDTRY 229
Query: 649 LTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ P S + L K + L A +++ EG+ R+D F+ ++ ++EVNTVPGMT
Sbjct: 230 ICPCGLSASQEQELKK----MALDAFHSVGCEGWGRVD-FMQDESDNFFLLEVNTVPGMT 284
Query: 708 PSTVL 712
+++
Sbjct: 285 DHSLV 289
>gi|427720677|ref|YP_007068671.1| D-alanine--D-alanine ligase [Calothrix sp. PCC 7507]
gi|427353113|gb|AFY35837.1| D-alanine--D-alanine ligase [Calothrix sp. PCC 7507]
Length = 366
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 132/347 (38%), Gaps = 81/347 (23%)
Query: 407 PMRHSINEWIKLAKENQATVFIAV-HGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDK 465
P ++ W ++ + V++ + HG GEDGT+Q LL VP+ G GV+ S MDK
Sbjct: 86 PQNQILSRWQSPSQVAEVDVWLPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSALGMDK 145
Query: 466 VATSLALNHLADLGVLTINKDVRRKEDLLKTPIV--DIWHELTSKLQCKTLCVKPARDGC 523
+A +A + G+ + + + P V + E+ + L VKPA G
Sbjct: 146 IAMKMAFDQ---AGLPQVKYKAVTRAQVWSNPCVFPKLCDEIEAALGYPAF-VKPANLGS 201
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S G+A++ ++L AL+ + R
Sbjct: 202 SVGIAKVRSRQELEA---ALDNA------AGYDR-------------------------- 226
Query: 584 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG 643
RL+ + E+ V+G S++ +T D E K+
Sbjct: 227 ------------RLIVEAGVVAREVECAVLGNDQPQASVVGEITFDS--DFYDYETKYTE 272
Query: 644 GTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIE 699
G L P P D ++I+ +A A+ G +R+D F GE+LI E
Sbjct: 273 GRADLLIPAPLP-------DNISRQIQDMALQAFAAVDAAGLARVDFFYVEATGELLINE 325
Query: 700 VNTVPGMTPSTVLIHQALSEQPPMYPH------QFFRKVLDLGSERF 740
+NT PG T A S P ++ H + +++ L ER+
Sbjct: 326 INTFPGFT--------ATSMYPQLWAHSGIPFPELVDRLIQLALERY 364
>gi|392555972|ref|ZP_10303109.1| D-alanine-D-alanine ligase B [Pseudoalteromonas undina NCIMB 2128]
Length = 306
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 87/297 (29%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN- 484
VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+ HL L+
Sbjct: 64 VFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRC----KHLFKSAGLSTAP 119
Query: 485 -KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V K+ I+D + K + VKP+ +G S G+A+ AE+ L
Sbjct: 120 YAVVDAKKGFDAKAIID---------EFKKVMVKPSHEGSSIGMAQASSAEE-------L 163
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
E+ L N+F F SQ +
Sbjct: 164 EDAL----SNAFK----------------------------FDSQVLVE----------- 180
Query: 604 RWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG-----INLTPPPAS 655
+W+ E T+ V+G + P + + + K+Q T +L+ P
Sbjct: 181 QWISGREFTITVLG-----DEVQPVIEMSTPNGFYDYQAKYQSSTTQYHCPADLSQPDTQ 235
Query: 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ ALD +L+ + G+ R+DA + G+ ++EVNTVPGMT +++
Sbjct: 236 KLQAMALDA----FDLVGAS----GWGRVDAMQD-QQGQFYLLEVNTVPGMTEKSLV 283
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 39/202 (19%)
Query: 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
KV+VKP+ GSSIG+ A + L+ A + D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQASSA-EELEDALSNAFK-FDSQVLVEQWIS-GREFTITVL--- 193
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G + PV+ + T + ++Y+ KY + YH P +
Sbjct: 194 -GDEVQPVIEMST--------------PNGFYDYQAKY-QSSTTQYHCPADLSQPDTQKL 237
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A F +G + R+D + G ++N + GM +
Sbjct: 238 QAMALDAFDLVGASGWGRVDAM-----------------QDQQGQFYLLEVNTVPGMTEK 280
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A G S ++ I+
Sbjct: 281 SLVPMAAKANGASFEQLVVRIL 302
>gi|329124132|ref|ZP_08252679.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
gi|327467557|gb|EGF13055.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
Length = 306
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 129/318 (40%), Gaps = 67/318 (21%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G+D P +++ L K+ VF +HG GEDGT+Q LLE G+PYTG GVMA
Sbjct: 37 GYDAHPIDPKEYNV---ANLKKDGFHRVFNILHGRGGEDGTMQGLLEQIGLPYTGCGVMA 93
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S MDK+ T + G+ + +V +E + + +KL L VKP
Sbjct: 94 SALTMDKMRTKMLWKA---FGLPVADMEVVTRETFSELDP----QSVVAKLGL-PLMVKP 145
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
+ +G S G+ + VKA+EE +E ++ E ++
Sbjct: 146 SLEGSSVGLTK----------VKAVEEL------------KSAVEYALKFDNTILIEEWL 183
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+ D E+TV V+ + ++P++ + G+ E
Sbjct: 184 DGD-------------------------ELTVPVLD-----NQVLPAIRIVPEGEFYDYE 213
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ P + +AL +R +A+ G+SRID + G ++
Sbjct: 214 AKYISDNTQYFCPAGLTPEREQALAILVKR---AYDAVGCRGWSRIDVMCDA-KGNFRLV 269
Query: 699 EVNTVPGMTPSTVLIHQA 716
EVNT PGMT ++ A
Sbjct: 270 EVNTNPGMTSHSLFPKSA 287
>gi|225023730|ref|ZP_03712922.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
23834]
gi|224943612|gb|EEG24821.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
23834]
Length = 320
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 121/304 (39%), Gaps = 74/304 (24%)
Query: 413 NEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL 472
+ ++L + F +HG GEDGT+Q+LL++ G+PYTG G+ AS MDK L
Sbjct: 62 QDILQLKAQGFQVAFNVLHGTYGEDGTVQALLDSIGIPYTGCGMAASALGMDKYRCKLIW 121
Query: 473 NHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVA 528
L D VL + D E L P+ VKPA +G S GV
Sbjct: 122 QALGLPVPDFAVLHDDTDFAAVEAELGLPMF----------------VKPAAEGSSVGVV 165
Query: 529 RLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588
++ +L + L E L HG I I E FV+
Sbjct: 166 KVKQPGELPKVYRELRERHL----------HGEI----------IAERFVDGG------- 198
Query: 589 STNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGIN 648
E T V+G+ +PS+ + + + + K+ +
Sbjct: 199 ------------------EYTCAVLGQ-----QALPSIRIIPATEFYDYDAKYFRDDTVY 235
Query: 649 LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
P S + + ++ + A+ G+ R+D F+ +G++ ++E+NTVPGMT
Sbjct: 236 QCP---SDLDAAGEAEIRRLAKAGFEAIGGRGWGRVD-FLRSQSGKLYLLEINTVPGMTS 291
Query: 709 STVL 712
+++
Sbjct: 292 HSLV 295
>gi|116253042|ref|YP_768880.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
3841]
gi|115257690|emb|CAK08788.1| putative D-alanine--D-alanine ligase B [Rhizobium leguminosarum bv.
viciae 3841]
Length = 308
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 127/321 (39%), Gaps = 72/321 (22%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD+ + + ++E KLA VF A+HG GEDGT+Q +LE +PYT GV+A
Sbjct: 35 GFDVT-RIDVARDVSE--KLAALKPDVVFNALHGPFGEDGTIQGILEYLEIPYTHSGVLA 91
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S MDK L A G+ V + T H + VKP
Sbjct: 92 SALAMDKDKAKLV---AAAAGITVAESQVVNRFAFPST------HPMKPP-----YVVKP 137
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
R+G S GV + ED +AH PP+I+ +
Sbjct: 138 VREGSSFGV--VIVTED---------------------QAH--------PPQIVSSPEWR 166
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
+E++ + E+T GV+G+ L + V + + +
Sbjct: 167 YGEEVIVERYVYGR--------------ELTCGVMGET----PLGVTEVVPQGHNFYDYD 208
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN---VDNGEV 695
K+ G ++ P S + + R A+ G SR D + ++GE+
Sbjct: 209 SKYAAGGSKHVIPAKISPNIYQKIQTLSLRAH---QAIGCRGVSRSDFRYDDRFSEDGEI 265
Query: 696 LIIEVNTVPGMTPSTVLIHQA 716
+ +EVNT PGMTP++++ A
Sbjct: 266 IWLEVNTQPGMTPTSLVPEMA 286
>gi|350569125|ref|ZP_08937522.1| D-alanine-D-alanine ligase [Propionibacterium avidum ATCC 25577]
gi|348660703|gb|EGY77410.1| D-alanine-D-alanine ligase [Propionibacterium avidum ATCC 25577]
Length = 365
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 25/167 (14%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL--- 481
VF +HG GEDGT+Q LLE GV Y G GV AS CMDK T + LA+ GVL
Sbjct: 100 VVFPVLHGPFGEDGTIQGLLEMAGVRYVGCGVAASANCMDKHLTKMI---LAEAGVLVGP 156
Query: 482 -TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
+ +D +ED + ++ + S+L+ L VKPAR G S G++++ + L +
Sbjct: 157 YVVVRDHEWRED--RNAVL----KAASRLE-YPLFVKPARGGSSIGISKVMSPDRLEAAI 209
Query: 541 --------KALEECLLR---IPPNSFSRAHGMIEMPNPPPEILIFEP 576
K L E +R I + HG + P EI++ +P
Sbjct: 210 EVAREHDNKVLIEQGIRGREIECSVLDGHHGAAPRASVPGEIVVHDP 256
Score = 46.6 bits (109), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 38/249 (15%)
Query: 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI 60
+++ G + P +++ E E + ++L+ + VKP R GSSIG++
Sbjct: 147 LAEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEY---PLFVKPARGGSSIGISKVMSP- 202
Query: 61 DSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGS 120
D L+ A + E D++V++E + G E VLD G P +P G
Sbjct: 203 DRLEAAIEVAREH-DNKVLIEQGIR-GREIECSVLDGHHG--AAPRASVP--------GE 250
Query: 121 VDVREKDAIFNYRRKYLPTQQVA-YHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179
+ V + D +++ KYL +Q A + + N +++ A F+ LG ARID
Sbjct: 251 IVVHDPDGFYDFEAKYLSGEQKASVQARAKLDDEIRNRVQKVAIKAFRVLGCEGLARIDT 310
Query: 180 WFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF--LFQQASKVGFSHSNILR 237
+ P GT+ + N + G ++S L QAS G +++ I+
Sbjct: 311 FVAPD-----------------GTVYVNEPNTMPGFTRSSGFPLMWQAS--GMTYAQIVS 351
Query: 238 TIIGHACSR 246
+I A R
Sbjct: 352 ELIELALER 360
>gi|313680822|ref|YP_004058561.1| d-alanine--d-alanine ligase [Oceanithermus profundus DSM 14977]
gi|313153537|gb|ADR37388.1| D-alanine--D-alanine ligase [Oceanithermus profundus DSM 14977]
Length = 323
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 111/291 (38%), Gaps = 67/291 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
+A + VF +HG GEDGT+Q E GVPY G V AS CMDK L+ LA
Sbjct: 72 VAWRDYDVVFPLLHGRWGEDGTIQGFFEMLGVPYVGADVTASAVCMDK---DLSKRILAQ 128
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
G+ + +V RK + + + VKPAR G S G+A++ +L
Sbjct: 129 AGLPVVPWEVLRKGEPVFVGL------------EPPFFVKPARAGSSVGIAKVRRYAELR 176
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
AL+E F D+++ +
Sbjct: 177 ---PALDEA------------------------------FRHDDKVVIEQAVPGVRELEV 203
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
GN VE V+G+ V+ + K+ G P
Sbjct: 204 ALLGN---VEAEASVVGE------------VRYQAEFYDYATKYTAGAAELDIPAALDPG 248
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ E + + R + L + G +R+D F+ ++GE+ + E+NT+PG TP
Sbjct: 249 TQETVQEMAVRAYRV---LGVRGMARVDFFL-AESGEIYLNELNTIPGFTP 295
>gi|425252624|ref|ZP_18645517.1| D-alanine--D-alanine ligase A [Escherichia coli CB7326]
gi|408187191|gb|EKI13167.1| D-alanine--D-alanine ligase A [Escherichia coli CB7326]
Length = 364
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + +R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRAIRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|160286234|pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
gi|160286235|pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
gi|160286236|pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
Thermophilus Hb8
Length = 319
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 110/294 (37%), Gaps = 70/294 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L+ E VF +HG GEDGT+Q LE G PY G GV AS C DK L+ LA
Sbjct: 69 LSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCXDK---DLSKRVLAQ 125
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK E VKPA G S G++R+ +DL
Sbjct: 126 AGVPVVPWVAVRK------------GEPPVVPFDPPFFVKPANTGSSVGISRVERFQDL- 172
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 173 -------EAALAL--------------------------------------AFRYDEKAV 187
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 188 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 245
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
+ E + Q + L A L + G +R+D F+ GE+ + E+NT+PG TP++
Sbjct: 246 TQETV----QELALKAYKVLGVRGXARVDFFLA--EGELYLNELNTIPGFTPTS 293
>gi|70732382|ref|YP_262138.1| D-alanine--D-alanine ligase [Pseudomonas protegens Pf-5]
gi|68346681|gb|AAY94287.1| D-alanine--D-alanine ligase B [Pseudomonas protegens Pf-5]
Length = 318
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GIDVGDDLLQR--------LLSEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S MDK+ T + LG+ T V E + + ++ L VKP
Sbjct: 106 SALAMDKLRTKQVWH---SLGIPTPRHAVLSSEADCISAVAEL---------GLPLIVKP 153
Query: 519 ARDGCSTGVARLCCAEDLTVYVKA 542
A +G S G+A++ A +L KA
Sbjct: 154 AHEGSSIGMAKVTSASELIDAWKA 177
>gi|398859367|ref|ZP_10615044.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM79]
gi|398237062|gb|EJN22825.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM79]
Length = 327
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSCEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVTSASELIDAWKA 177
>gi|88856723|ref|ZP_01131378.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
gi|88814020|gb|EAR23887.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
Length = 372
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 125/315 (39%), Gaps = 61/315 (19%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VF +HG GEDGT+Q L+E G+PY G GV+AS M+K T LAL GV
Sbjct: 114 VFPILHGPFGEDGTVQGLIELTGLPYVGNGVLASSMGMNKHFTKLALEA---AGVAVAPW 170
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ P D+W + S L VKPAR G S GV ++ A++L
Sbjct: 171 VTISAVQWSRHP--DVWRQRASSLGLPVF-VKPARAGSSVGVTKVTHADEL--------- 218
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ + F E L T +
Sbjct: 219 ------------------------DAALATAFAEDSTALVEQAMTGR------------- 241
Query: 606 VEITVGVI-GKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLTPPPASIMSTEALD 663
EI GV+ G+ G + + + +G D E K+ L PA + E L
Sbjct: 242 -EIECGVLSGRDGGDTRVSVAGEIVVTGRDFYDFEAKYLDVAAAELI-CPAELHDGE-LW 298
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM 723
+ ++ A+ G +R+D F D E ++ E+NT+PG TP + + + +
Sbjct: 299 QMQRTAARAFEAIGGAGLARVDFF--FDGAEFVVNEINTLPGFTPIS-MFPKCWAASGMS 355
Query: 724 YPHQFFRKVLDLGSE 738
YP + ++++LG E
Sbjct: 356 YP-ELIDELIELGLE 369
>gi|333925582|ref|YP_004499161.1| D-alanine--D-alanine ligase [Serratia sp. AS12]
gi|333930535|ref|YP_004504113.1| D-alanine--D-alanine ligase [Serratia plymuthica AS9]
gi|386327406|ref|YP_006023576.1| D-alanine--D-alanine ligase [Serratia sp. AS13]
gi|333472142|gb|AEF43852.1| D-alanine--D-alanine ligase [Serratia plymuthica AS9]
gi|333489642|gb|AEF48804.1| D-alanine--D-alanine ligase [Serratia sp. AS12]
gi|333959739|gb|AEG26512.1| D-alanine--D-alanine ligase [Serratia sp. AS13]
Length = 306
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 129/328 (39%), Gaps = 81/328 (24%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK T + +
Sbjct: 49 QLKEHGFTKVFIALHGRGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ + ++ K ++ L L VKP+R+G S G++++ + L
Sbjct: 109 LPVAPYVALNRQQYAGAEKQSLIARVEAL-----GLPLIVKPSREGSSVGMSKVTERDAL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
ALEE F D++L
Sbjct: 164 EA---ALEEG------------------------------FRHDDDVLV----------- 179
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
+W+ E TV ++G ++PS+ ++ +G + K+ P
Sbjct: 180 ------EKWLSGPEYTVAMLGD-----QVLPSIRIQPAGVFYDYQAKYISDDTQYFCPSG 228
Query: 654 ASIMSTEALDKCKQRIELIANALQL------EGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+Q E+ A AL+ G+ R+D + D G ++EVNT PGMT
Sbjct: 229 LG---------AEQEAEMAALALRAYRGLDCSGWGRVDVMQDSD-GSFYLLEVNTSPGMT 278
Query: 708 PSTVLIHQALSEQPPMYPHQFFRKVLDL 735
+++ A Q + Q ++L+L
Sbjct: 279 SHSLVPMAA--RQSGLSFSQLVARILEL 304
>gi|402698522|ref|ZP_10846501.1| D-alanine--D-alanine ligase [Pseudomonas fragi A22]
Length = 318
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 28/144 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+ R + E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GIDVGDDFIAR--------ITHEKIDRAFIILHGRGGEDGSIQGLLEYMGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VLT D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLTSEADCISAAKELSFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTV 538
VKPA +G S G+A++ A++L V
Sbjct: 151 -VKPAHEGSSIGMAKVNSADELIV 173
>gi|452749592|ref|ZP_21949352.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri NF13]
gi|452006524|gb|EMD98796.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri NF13]
Length = 314
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 39/206 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D D+L R L+ E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 50 GIDAGDDLLQR--------LSSERIDRAFIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 101
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L VL D + + L P++
Sbjct: 102 SALAMDKLRTKQVWQSLGLPTPQHAVLATEADCKAAAETLGFPLI--------------- 146
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA--------LEECLLRIPPNSFSRAHGMIEMPN 566
VKPA +G S G+A++ +L +A L E ++ P + + HG +
Sbjct: 147 -VKPAHEGSSIGMAKVGGLAELIDAWRAASGYDSQVLVEQWIQGPEFTVAVLHGQV---L 202
Query: 567 PPPEILIFEPFVETDEILFSSQSTNK 592
PP + F + D +S + +
Sbjct: 203 PPIGLGTPHTFYDYDAKYLASDTQYR 228
>gi|15837401|ref|NP_298089.1| D-alanine--D-alanine ligase [Xylella fastidiosa 9a5c]
gi|9105695|gb|AAF83609.1|AE003919_20 D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c]
Length = 320
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 117/303 (38%), Gaps = 82/303 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS---LALN----HLA 476
VF +HG G GEDG +Q L++A GVPYTG V+ S MDKV T LAL A
Sbjct: 74 VFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYA 133
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L V +VR+ ++L P++ +KPA++G S GV+R+ E
Sbjct: 134 SLSVCATAVEVRQAVEMLGFPVI----------------IKPAKEGSSVGVSRVFALEH- 176
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE + +R G L+ E +E D
Sbjct: 177 ------LEEAVALA-----ARYEGE----------LLMEQLIEGD--------------- 200
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TV ++ + +PS+ + G K+ + P +
Sbjct: 201 ----------ELTVSILDEMA-----LPSIRIVPQGQWYDYNAKYLAEDTQYVCPGLDDV 245
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E + G+ R+D +G ++EVNT PGMT + L+ +A
Sbjct: 246 AEAEIARLALAAFRAVG----CRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHS-LVPKA 300
Query: 717 LSE 719
S+
Sbjct: 301 ASQ 303
>gi|398915516|ref|ZP_10657365.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM49]
gi|398176285|gb|EJM64010.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM49]
Length = 327
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCISASTELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVSSASELIDAWKA 177
>gi|383317090|ref|YP_005377932.1| D-alanine--D-alanine ligase [Frateuria aurantia DSM 6220]
gi|379044194|gb|AFC86250.1| D-alanine--D-alanine ligase [Frateuria aurantia DSM 6220]
Length = 383
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 115/286 (40%), Gaps = 62/286 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VF +HG GEDGTLQ LLE V Y G GV AS CMDK A L H A L V LT
Sbjct: 104 VFPVLHGPGGEDGTLQGLLEQAAVAYVGNGVTASAACMDK-AVCRRLLHEAGLPVLPALT 162
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ R + + +L+ L VKP G S G++++ E + + A
Sbjct: 163 LAAGQRLS-----------YAQACLQLETSILMVKPVGQGSSVGISKV---EQASEFQAA 208
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
LE +R++G P ++I E+ + G+
Sbjct: 209 LES----------ARSYG--------PRVMIEPALARPRELEIGMLERS--------DGH 242
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+W S + + + + S + K+ I+L P + ++ +
Sbjct: 243 RQW---------------SAVAEIELAPAYRFYSYQAKYMDAEAISLRLP--AELAEDVA 285
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVN-VDNGEVLIIEVNTVPGMT 707
+ + + L EG +R+D ++ G + I E+NT+PG+T
Sbjct: 286 ARIRDLADRACQVLACEGLARVDFLLSPAAGGMIYINEINTMPGLT 331
>gi|386617872|ref|YP_006137452.1| D-alanine--D-alanine ligase [Escherichia coli NA114]
gi|387828395|ref|YP_003348332.1| D-alanine-D-alanine ligase [Escherichia coli SE15]
gi|432396256|ref|ZP_19639048.1| D-alanine-D-alanine ligase A [Escherichia coli KTE25]
gi|432405252|ref|ZP_19647975.1| D-alanine-D-alanine ligase A [Escherichia coli KTE28]
gi|432420492|ref|ZP_19663050.1| D-alanine-D-alanine ligase A [Escherichia coli KTE178]
gi|432498626|ref|ZP_19740406.1| D-alanine-D-alanine ligase A [Escherichia coli KTE216]
gi|432557399|ref|ZP_19794092.1| D-alanine-D-alanine ligase A [Escherichia coli KTE49]
gi|432693166|ref|ZP_19928381.1| D-alanine-D-alanine ligase A [Escherichia coli KTE162]
gi|432709213|ref|ZP_19944282.1| D-alanine-D-alanine ligase A [Escherichia coli KTE6]
gi|432721945|ref|ZP_19956872.1| D-alanine-D-alanine ligase A [Escherichia coli KTE17]
gi|432726491|ref|ZP_19961374.1| D-alanine-D-alanine ligase A [Escherichia coli KTE18]
gi|432740178|ref|ZP_19974900.1| D-alanine-D-alanine ligase A [Escherichia coli KTE23]
gi|432917511|ref|ZP_20122042.1| D-alanine-D-alanine ligase A [Escherichia coli KTE173]
gi|432924816|ref|ZP_20126955.1| D-alanine-D-alanine ligase A [Escherichia coli KTE175]
gi|432979886|ref|ZP_20168667.1| D-alanine-D-alanine ligase A [Escherichia coli KTE211]
gi|432989487|ref|ZP_20178157.1| D-alanine-D-alanine ligase A [Escherichia coli KTE217]
gi|433095249|ref|ZP_20281465.1| D-alanine-D-alanine ligase A [Escherichia coli KTE139]
gi|433104517|ref|ZP_20290540.1| D-alanine-D-alanine ligase A [Escherichia coli KTE148]
gi|433109634|ref|ZP_20295514.1| D-alanine-D-alanine ligase A [Escherichia coli KTE150]
gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium
CY_gF1DD01_14]
gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15]
gi|333968373|gb|AEG35178.1| D-alanyl-D-alanine ligase [Escherichia coli NA114]
gi|430918638|gb|ELC39639.1| D-alanine-D-alanine ligase A [Escherichia coli KTE25]
gi|430932748|gb|ELC53167.1| D-alanine-D-alanine ligase A [Escherichia coli KTE28]
gi|430947657|gb|ELC67354.1| D-alanine-D-alanine ligase A [Escherichia coli KTE178]
gi|431032220|gb|ELD44931.1| D-alanine-D-alanine ligase A [Escherichia coli KTE216]
gi|431094452|gb|ELE00084.1| D-alanine-D-alanine ligase A [Escherichia coli KTE49]
gi|431237308|gb|ELF32308.1| D-alanine-D-alanine ligase A [Escherichia coli KTE162]
gi|431252934|gb|ELF46448.1| D-alanine-D-alanine ligase A [Escherichia coli KTE6]
gi|431268307|gb|ELF59781.1| D-alanine-D-alanine ligase A [Escherichia coli KTE17]
gi|431276599|gb|ELF67619.1| D-alanine-D-alanine ligase A [Escherichia coli KTE18]
gi|431286307|gb|ELF77133.1| D-alanine-D-alanine ligase A [Escherichia coli KTE23]
gi|431447384|gb|ELH28116.1| D-alanine-D-alanine ligase A [Escherichia coli KTE173]
gi|431449475|gb|ELH30048.1| D-alanine-D-alanine ligase A [Escherichia coli KTE175]
gi|431496507|gb|ELH76090.1| D-alanine-D-alanine ligase A [Escherichia coli KTE211]
gi|431498732|gb|ELH77917.1| D-alanine-D-alanine ligase A [Escherichia coli KTE217]
gi|431619819|gb|ELI88716.1| D-alanine-D-alanine ligase A [Escherichia coli KTE139]
gi|431631711|gb|ELJ00017.1| D-alanine-D-alanine ligase A [Escherichia coli KTE150]
gi|431634541|gb|ELJ02782.1| D-alanine-D-alanine ligase A [Escherichia coli KTE148]
Length = 364
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNNNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|433448808|ref|ZP_20411673.1| D-alanyl-alanine synthetase A [Weissella ceti NC36]
gi|429539197|gb|ELA07234.1| D-alanyl-alanine synthetase A [Weissella ceti NC36]
Length = 385
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 404 DELPMRHSINEWIKLAKENQATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTC 462
+++ M + + L +Q +F VHG +GEDGTLQSL P+ GPG AS
Sbjct: 74 EKMDMTNPLAPIANLGAMDQIDLFYPVVHGNLGEDGTLQSLFRLLQKPFIGPGTAASAMA 133
Query: 463 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
DK T LN + + K+D + EL KL TL VK A+ G
Sbjct: 134 FDKDLTKRVLNQAGIRNTKYVLLTDQTKDDY-------TYEELVEKLGTSTLFVKAAKQG 186
Query: 523 CSTGVARLCCAEDLTVYVKALEECL 547
S G+ R+ AE+ Y L + L
Sbjct: 187 SSVGIHRVKNAEE---YAAGLADAL 208
>gi|227832984|ref|YP_002834691.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
700975]
gi|262182528|ref|ZP_06041949.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
700975]
gi|254767727|sp|C3PFZ9.1|DDL_CORA7 RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|227454000|gb|ACP32753.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
700975]
Length = 356
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 118/304 (38%), Gaps = 81/304 (26%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR 489
+HG GEDGT+Q L E G+PY G GV+AS MDK T L G+ ++V
Sbjct: 107 LHGPYGEDGTVQGLFELSGIPYVGAGVLASAVGMDKEFTK---KLLVAEGLPVAPQEVLT 163
Query: 490 KEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLR 549
E L +L + + VKPAR G S GV+++ EDL E L
Sbjct: 164 GEATLD--------DLQKERLGLPVFVKPARGGSSIGVSKVSAWEDL--------EAALT 207
Query: 550 IPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 609
+ E+D D+++ + E+
Sbjct: 208 LA--------------------------YESD-------------DKVLIEPEISGAEVE 228
Query: 610 VGVIGKC-GSMHSLMPS----VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
VGV+ + GS+ + +P+ T E G + K+ P P +S E +
Sbjct: 229 VGVLERPDGSLQASVPAKILGTTESEEG-FYDFDAKYIDEGVSAAIPAP---LSEELTAE 284
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMY 724
+QR AL G SR+D FV+ + I EVNT PG TP + MY
Sbjct: 285 LRQRAIEAFRALGASGLSRVDFFVS--DYSYCINEVNTFPGFTPIS------------MY 330
Query: 725 PHQF 728
P F
Sbjct: 331 PQVF 334
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 31/207 (14%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V VKP R GSSIGV+ + L+ A + E DD+V++E + G +V
Sbjct: 180 VFVKPARGGSSIGVS-KVSAWEDLEAALTLAYES-DDKVLIEPEISGA--------EVEV 229
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G P L V + G+ + E +++ KY+ + V+ P + +R
Sbjct: 230 GVLERPDGSLQASVPAKILGTTESEE--GFYDFDAKYI-DEGVSAAIPAPLSEELTAELR 286
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ A F+ LG +R+D F S+ Y ++N G S
Sbjct: 287 QRAIEAFRALGASGLSRVD----------FFVSDYSY--------CINEVNTFPGFTPIS 328
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
Q + VG ++ +L T+I A +R
Sbjct: 329 MYPQVFAAVGVGYAELLDTLIQTALAR 355
>gi|398841921|ref|ZP_10599126.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM102]
gi|398107030|gb|EJL97040.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM102]
Length = 327
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSCEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVTSASELIDAWKA 177
>gi|421074492|ref|ZP_15535523.1| D-alanine--D-alanine ligase [Pelosinus fermentans JBW45]
gi|392527363|gb|EIW50458.1| D-alanine--D-alanine ligase [Pelosinus fermentans JBW45]
Length = 311
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 128/297 (43%), Gaps = 63/297 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L KE VF A+HG GEDG LQ LE G+PYTG GV+AS MDK ++
Sbjct: 52 QLTKEKIEIVFNAIHGQYGEDGVLQGALELLGIPYTGSGVLASAMAMDK---GISKRIFL 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ T + K DL + D+ E+ + + VK + G S GV + +E+L
Sbjct: 109 SASIPTPRSLLFTKADLSR----DLVTEIIAGFSIP-VVVKSSSQGSSIGVVIVEESENL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ +A+E+ F +D IL
Sbjct: 164 S---QAIEQA------------------------------FQYSDTILVEE--------- 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
KG E+TV ++G + +L P + + K+ GT + P S
Sbjct: 182 -FIKGR----ELTVAIVGN-NDLKAL-PVIEIVPFSGRYDYHSKYTKGTTEYIVPARLSE 234
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+T + Q++ L A +AL+ G +R+D ++ D+ ++EVNT+PGMT ++++
Sbjct: 235 ETTFLV----QKVALEAFHALRCSGIARVDIMLDEDDNP-YVLEVNTIPGMTGTSLV 286
>gi|212697006|ref|ZP_03305134.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
7454]
gi|212676004|gb|EEB35611.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
7454]
Length = 352
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 120/303 (39%), Gaps = 81/303 (26%)
Query: 420 KENQATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLA 476
K+ T+ I +HG GEDGT+Q L+A + Y G G+++S CMDKV + N L+
Sbjct: 88 KDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSSVCMDKVTANDIFEKNKLS 147
Query: 477 DLGVL-----TINKDVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
L T N+D +K ++ +K P++ VKP+ +G S GV
Sbjct: 148 QARYLYAKEETFNEDFAKKCQEYIKFPMI----------------VKPSANGSSVGV--- 188
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
++A + E+ E L ++ + +E +
Sbjct: 189 -------------------------NKAENIEELLKFGKEALKYDEKILVEEAIIGQ--- 220
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK-FQGGTGINL 649
E+ + VIG+ M S + T + L + K F T L
Sbjct: 221 ----------------EVEIAVIGENELMASKPGAYTTDHT--FLDYDAKYFDKSTKEEL 262
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P + E L+ K+ A +GF+R+D F+ + + I E+NT PG TP+
Sbjct: 263 PYPIDENLEKELLEFAKK----CYKACGCQGFARVDIFLK--DNKFYINEINTFPGFTPT 316
Query: 710 TVL 712
+
Sbjct: 317 SFF 319
>gi|116628785|ref|YP_813957.1| D-alanyl-alanine synthetase A [Lactobacillus gasseri ATCC 33323]
gi|420148290|ref|ZP_14655559.1| D-alanine--D-alanine ligase [Lactobacillus gasseri CECT 5714]
gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323]
gi|398400090|gb|EJN53679.1| D-alanine--D-alanine ligase [Lactobacillus gasseri CECT 5714]
Length = 375
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/461 (22%), Positives = 172/461 (37%), Gaps = 117/461 (25%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V +IFGG++SE +VS+MS N++ + N +V P + + G AN D+
Sbjct: 20 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWI-----TNDGYLAN----DAD 69
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
SR V P +E P + A S++
Sbjct: 70 SRKVLDNP---------------KMEVANPHKVANISNIV-------------------- 94
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
EL R I+ + F VHG +GEDG LQ L P+ G V+A+
Sbjct: 95 ----ELKDRPEIDVF-----------FPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 139
Query: 461 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 519
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 140 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPS 195
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G S GV+ + ++ V AL E F
Sbjct: 196 NQGSSVGVSHVTNEKEYKV---ALAEA------------------------------FKY 222
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D++L + + GN + + VG I + K+S + E
Sbjct: 223 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 267
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 699
K+ + L P + ++K ++ + A + G +RID+ + ++ EV++ E
Sbjct: 268 KYDDNSTSTLEIPAK--LPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTE 325
Query: 700 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 326 VNALPGFT--NISMYPKLFEEVGIPYTDLITKLIDYAMERY 364
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 37/208 (17%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 99
VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 192 VKPSNQGSSVGVSH----VTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL----- 242
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G D P+V ++ + KD+ + Y KY P + P ++ +R
Sbjct: 243 GND-KPIVAGVGQI---------INAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVR 292
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ A +FQ ARID TE ++ T++N + G S
Sbjct: 293 KNALKVFQATECSGLARIDSML----------------RTEDKEVVLTEVNALPGFTNIS 336
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRF 247
+ +VG +++++ +I +A R+
Sbjct: 337 MYPKLFEEVGIPYTDLITKLIDYAMERY 364
>gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213 = JCM
1192]
Length = 397
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 130 AVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIM 189
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
D R D+ ++ L VKP+R G S GV ++ AEDL
Sbjct: 190 VDAR------AFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 235
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP+RAGSS GVT K K LE DRV + G ++ ++ G
Sbjct: 215 VKPSRAGSSFGVT---------KVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGR 265
Query: 102 DCHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 266 EIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLE 325
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 326 DVRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFT 368
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
S + G ++ ++ +I
Sbjct: 369 PISMYPKAWDATGVGYTELITRLI 392
>gi|347538013|ref|YP_004845437.1| D-alanine--D-alanine ligase [Pseudogulbenkiania sp. NH8B]
gi|345641190|dbj|BAK75023.1| D-alanine--D-alanine ligase [Pseudogulbenkiania sp. NH8B]
Length = 303
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 120/300 (40%), Gaps = 78/300 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L E VFIA+HG GEDGTLQ LE G+PYTG GVMAS MDK T L L A
Sbjct: 52 LKDEGFERVFIALHGPFGEDGTLQGALETMGMPYTGCGVMASAIGMDKWRTKL-LWQGAG 110
Query: 478 LGV-----LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
L + L + D E L P L VKPA +G S GV ++
Sbjct: 111 LPIPAFVLLADDSDFAVVEAQLGLP----------------LFVKPATEGSSIGVTKVKH 154
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
+L A EE +R + +++I E FV
Sbjct: 155 PGELRA---AYEE----------ARRY---------DKLVIAEAFVGGG----------- 181
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
E T +IG +P++ ++ + + + K+ + P
Sbjct: 182 --------------EYTCAIIGD-----KALPTIKIEPATEFYDYQAKYFRDDTVYRCP- 221
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E + ++ L G+ R+D F+ + G + ++EVNT PGMT +++
Sbjct: 222 --SGLSAEVEQRARELALTAFEVLGGRGWGRVD-FLMDEAGGIYLLEVNTSPGMTSHSLV 278
>gi|424871544|ref|ZP_18295206.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393167245|gb|EJC67292.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 308
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 129/324 (39%), Gaps = 78/324 (24%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD+ + + ++E KLA VF A+HG GEDGT+Q +LE +PYT GV+A
Sbjct: 35 GFDVT-RIDVARDVSE--KLAALKPDVVFNALHGPFGEDGTIQGILEYLEIPYTHSGVLA 91
Query: 459 SKTCMDKVATSLALNHLADLGVL---TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 515
S MDK L A + V +N+ +K P V
Sbjct: 92 SALAMDKDKAKLVAG-AAGIPVAESQVVNRFAFPSTHPMKPPYV---------------- 134
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
VKP R+G S GV + ED +AH PP+I+
Sbjct: 135 VKPVREGSSFGV--VIVTED---------------------QAH--------PPQIVSSP 163
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL 635
+ +E++ + E+T GV+G+ L + V + +
Sbjct: 164 EWRYGEEVIVERYVYGR--------------ELTCGVMGET----PLGVTEVVPQGHNFY 205
Query: 636 SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN---VDN 692
+ K+ G ++ P S + + R A+ G SR D + ++
Sbjct: 206 DYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAH---QAIGCRGVSRSDFRYDDRFSED 262
Query: 693 GEVLIIEVNTVPGMTPSTVLIHQA 716
GE++ +EVNT PGMTP++++ A
Sbjct: 263 GEIIWLEVNTQPGMTPTSLVPEMA 286
>gi|327399131|ref|YP_004340000.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
gi|327181760|gb|AEA33941.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
Length = 294
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 121/298 (40%), Gaps = 76/298 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
K+ K + + VFIA+HGG GE+G LQ+ LE+ G+ +TG S M+K AT L L+
Sbjct: 48 KIIKSSPSVVFIALHGGFGENGQLQAALESLGIKHTGCSFAESNIAMNKFATKAILKKLS 107
Query: 477 -DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
+ K V E++ PI C+KP +G S V
Sbjct: 108 IPTAEFKLIKKVEEIENIDFYPI----------------CIKPNNEGSSVDV-------- 143
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
+F+ ++ + SQ+ K +
Sbjct: 144 ------------------NFAN---------------------NENQAKYISQNLLKKHN 164
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
L+ + E+TVGV+ +P + ++ + K+ G + P P
Sbjct: 165 ELIIEKRLSGKELTVGVL-----FGKALPIIEIRPKSGFYDYKNKYTKGATDYIVPAPLE 219
Query: 656 IMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
++K + I + A A+ + ++RID F+ +D ++E+NT+PGMTP+++L
Sbjct: 220 ----NNIEKLIKDIAVKAFEAIGCKSYARID-FI-LDGNVPYLLEINTIPGMTPTSLL 271
>gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
Length = 316
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 113/305 (37%), Gaps = 82/305 (26%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+LA E VFIA+HG GEDGT+Q LE G+PYTG G MAS MDK T +
Sbjct: 52 ELAAEGFDRVFIALHGRYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVG 111
Query: 477 ----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+ VL + ++R D L P++ +KP +G + G+ ++
Sbjct: 112 LPTPEFEVLDADTELRLVPDRLSLPLI----------------IKPPHEGSTVGITKVVG 155
Query: 533 AEDLT-VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591
D+ Y A F+ V ++ +
Sbjct: 156 YSDMKEAYAAAAR-----------------------------FDSVVLAEQFIIGR---- 182
Query: 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651
E+TV V+G G +P + + G E K+ P
Sbjct: 183 ---------------ELTVAVLGS-GKGARALPVIEIAAPGGNYDYEHKYFSDDTQFFCP 226
Query: 652 PPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
D + + IA AL EG+ R D ++ DN ++E+NT PGMT
Sbjct: 227 ATLP-------DGVAEEVAEIAVKAYQALGCEGWGRADFILDRDN-RPWLLEMNTSPGMT 278
Query: 708 PSTVL 712
+++
Sbjct: 279 SHSLV 283
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 35/207 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+++KP GS++G+T G D +K+A D V+ E F+ G E T VL G
Sbjct: 137 LIIKPPHEGSTVGITKVVGYSD-MKEAYAAAAR-FDSVVLAEQFII-GRELTVAVLGSGK 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV +++ ++Y KY + + P P V +
Sbjct: 194 GARALPV--------------IEIAAPGGNYDYEHKYF-SDDTQFFCPATLPDGVAEEVA 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
E A +Q LG + R D + L W ++N GM S
Sbjct: 239 EIAVKAYQALGCEGWGRAD-FILDRDNR------------PW----LLEMNTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSR 246
+ A VG S++++ +I+ A +
Sbjct: 282 LVPMAAKAVGISYADLCVSILSEASCK 308
>gi|432552390|ref|ZP_19789122.1| D-alanine-D-alanine ligase A [Escherichia coli KTE47]
gi|431087022|gb|ELD93027.1| D-alanine-D-alanine ligase A [Escherichia coli KTE47]
Length = 364
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNIS---------FSEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|408483713|ref|ZP_11189932.1| D-alanine--D-alanine ligase [Pseudomonas sp. R81]
Length = 318
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 68/144 (47%), Gaps = 20/144 (13%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+ R L E FI +HG GEDG++Q LLE G+PYTG GV+A
Sbjct: 54 GIDVGDDFIAR--------LQAEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLA 105
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
S MDK+ T + LG+ T V ED + +K L VKP
Sbjct: 106 SALAMDKLRTKQVWHS---LGIPTPRHSVLCSEDDCIS---------AAKELGLPLIVKP 153
Query: 519 ARDGCSTGVARLCCAEDLTVYVKA 542
A +G S G+A++ A +L KA
Sbjct: 154 AHEGSSIGMAKVNSAAELIDAWKA 177
>gi|384196505|ref|YP_005582249.1| D-alanine--D-alanine ligase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333109442|gb|AEF26458.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 395
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 128 AVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIM 187
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
D R D+ ++ L VKP+R G S GV ++ AEDL
Sbjct: 188 VDAR------AFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 233
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP+RAGSS GVT K K LE DRV + G ++ ++ G
Sbjct: 213 VKPSRAGSSFGVT---------KVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGR 263
Query: 102 DCHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 264 EIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLE 323
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 324 DVRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFT 366
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
S + G ++ ++ +I
Sbjct: 367 PISMYPKAWDATGVGYTELITRLI 390
>gi|398866248|ref|ZP_10621748.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM78]
gi|398241585|gb|EJN27235.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM78]
Length = 321
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVSSASELIDAWKA 177
>gi|415719050|ref|ZP_11467587.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 1500E]
gi|388059477|gb|EIK82209.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 1500E]
Length = 380
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 53/292 (18%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVL-TI 483
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK L A + V I
Sbjct: 106 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAK-QLFKAAGINVAPGI 164
Query: 484 NKDVRRKEDLLKTPIVDIWHELTSKLQCKT----LCVKPARDGCSTGVARLCCAEDLTVY 539
D R+ +E+ ++++ L VKP+R G S GV ++ +
Sbjct: 165 ALDARKFASDAANNFDAYANEILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRD----- 219
Query: 540 VKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD-RLM 598
KAL + + + + ++ E ++ EI + + + +
Sbjct: 220 AKALADAVFEASKHDWR---------------VLIEQGIDAREIECAVLAARDGEEPQAS 264
Query: 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPASI 656
W G V+ K +++G+ + K+ ++ P +
Sbjct: 265 WPGEV--------VLDK-------------RQAGEDQFYDFDSKYMDSAASHIEVP--AD 301
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ E L + ++ A G SR+D+FV D G V++ E+NT+PG TP
Sbjct: 302 LPEETLQRVRKTALAAFKAADGRGLSRVDSFVTKD-GRVILNEINTMPGFTP 352
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 48/211 (22%)
Query: 42 VKPTRAGSSIGVTV-----AYGVIDSLKKA-----KGIILEGIDDRVVVELFLEGGSEFT 91
VKP+RAGSS GVT A + D++ +A + +I +GID R E
Sbjct: 201 VKPSRAGSSFGVTKVESRDAKALADAVFEASKHDWRVLIEQGIDAR-----------EIE 249
Query: 92 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPR 149
VL G + P P EV L D R+ +D +++ KY+ + P
Sbjct: 250 CAVLAARDGEE--PQASWPGEVVL------DKRQAGEDQFYDFDSKYMDSAASHIEVPAD 301
Query: 150 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 209
P + +R+ A F+ +R+D + T+ G ++ +I
Sbjct: 302 LPEETLQRVRKTALAAFKAADGRGLSRVDSFV-----------------TKDGRVILNEI 344
Query: 210 NLISGMEQTSFLFQQASKVGFSHSNILRTII 240
N + G S + G S+S+++ +I
Sbjct: 345 NTMPGFTPISMYPKAWEATGISYSDLITKLI 375
>gi|417846363|ref|ZP_12492370.1| D-alanine--D-alanine ligase [Haemophilus haemolyticus M21639]
gi|341952501|gb|EGT79026.1| D-alanine--D-alanine ligase [Haemophilus haemolyticus M21639]
Length = 306
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 125/301 (41%), Gaps = 64/301 (21%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L K+ VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T +
Sbjct: 53 LKKDGFNRVFNILHGRGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKA--- 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
G+ + +V +E + + +L L VKP+ +G S G+ ++ A++L
Sbjct: 110 FGLPVADMEVVTRETFSELDAQAVVEKLGLPLM-----VKPSLEGSSVGLTKVKAADEL- 163
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
K+ E L+ ++ E ++ D
Sbjct: 164 ---KSAVEYALKF------------------DNTILIEEWLSGD---------------- 186
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
E+TV V+ ++P++ + G+ K+ PA +M
Sbjct: 187 ---------ELTVPVLD-----SQVLPAIRIVPEGEFYDYNAKYISDNTQYFC--PAGLM 230
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
S E + ++ +A+ G+SRID + + G+ ++EVNT PGMT ++ A
Sbjct: 231 S-EREQELAILVKRAYDAVGCRGWSRIDVMCD-EKGDFRLVEVNTNPGMTSHSLFPKSAA 288
Query: 718 S 718
S
Sbjct: 289 S 289
>gi|113477630|ref|YP_723691.1| D-alanyl-alanine synthetase A [Trichodesmium erythraeum IMS101]
gi|123351842|sp|Q10X06.1|DDL_TRIEI RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|110168678|gb|ABG53218.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
Length = 366
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 122/297 (41%), Gaps = 78/297 (26%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F +HG GEDGT+Q LL+ VP+ G GV+ S MDK+A +A +H G+ +
Sbjct: 107 FPILHGPNGEDGTIQGLLKLMQVPFVGSGVLGSAMGMDKIAMKIAFDH---AGLPQVKYQ 163
Query: 487 VRRKEDLLKTPIV------DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540
V + + V DI E T + C VKPA G S G+A++ +L
Sbjct: 164 VVTRSQIWSNSCVFPKLCDDI--ETTLEYPC---FVKPANLGSSVGIAKVRSRSELET-- 216
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
AL+ S+ R +I E VE E+
Sbjct: 217 -ALDNAA------SYDRR-------------IIVEAGVEAKEL----------------- 239
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVT----VKESGDILSLEEKF-QGGTGINLTPPPAS 655
+C + + MP + + + D E K+ +G +++ PA
Sbjct: 240 --------------ECAVLGNDMPKASIVGEITYNSDFYDYETKYTEGKADLHI---PAR 282
Query: 656 IMSTEAL-DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711
+ +EA+ K K+ A+ G +R+D F GE+LI E+NT+PG T S++
Sbjct: 283 V--SEAIATKIKEMATQAFLAVDAAGLARVDFFYVEKTGEILINEINTMPGFTSSSM 337
>gi|417941785|ref|ZP_12585067.1| D-alanine--D-alanine ligase (D-Ala-D-Ala ligase) [Bifidobacterium
breve CECT 7263]
gi|376168027|gb|EHS86840.1| D-alanine--D-alanine ligase (D-Ala-D-Ala ligase) [Bifidobacterium
breve CECT 7263]
Length = 397
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDGT+Q LLE GVPY G GV AS CMDK T + LN I
Sbjct: 130 AVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLNAAGIPTAPGIM 189
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
D R D+ ++ L VKP+R G S GV ++ AEDL
Sbjct: 190 VDAR------AFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAEDL 235
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP+RAGSS GVT K K LE DRV + G ++ ++ G
Sbjct: 215 VKPSRAGSSFGVT---------KVDKAEDLETQQDRVAAAIATAGEHDWKVLIEQGIDGR 265
Query: 102 DCHPVVLLPT---EVELQFQGSV--DVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
+ VL P E E + G + D + D +++ KY+ P P+ V+
Sbjct: 266 EIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDASASHVEVPANLPVSVLE 325
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R+ A F+ + +R+D + P GT++ +IN + G
Sbjct: 326 DVRDVARRAFKAVDGAGLSRVDTFVTPD-----------------GTVMVNEINTMPGFT 368
Query: 217 QTSFLFQQASKVGFSHSNILRTII 240
S + G ++ ++ +I
Sbjct: 369 PISMYPKAWDATGVGYTELITRLI 392
>gi|415711894|ref|ZP_11464430.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 55152]
gi|415715816|ref|ZP_11466193.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 1400E]
gi|388057627|gb|EIK80452.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 55152]
gi|388057894|gb|EIK80702.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis 1400E]
Length = 381
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 116/291 (39%), Gaps = 51/291 (17%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK I
Sbjct: 106 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIA 165
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKT----LCVKPARDGCSTGVARLCCAEDLTVYV 540
DVR+ +E+ +++ L VKP+R G S GV ++ +
Sbjct: 166 LDVRKFASDAANHFDSYANEILEQVEAAKLEYPLFVKPSRAGSSFGVTKVESRD-----A 220
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNADRLMW 599
KAL + + + + ++ E ++ EI + + + + + W
Sbjct: 221 KALADAVYEASKHDWR---------------VLVEQGIDAREIECAVLAARDGDEPQASW 265
Query: 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPASIM 657
G V+ K +E+G+ + K+ ++ P + +
Sbjct: 266 PGEV--------VLDK-------------REAGEDQFYDFDSKYMDSAASHVEVP--ANL 302
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
E L + + A G SR+D+FV + G V+I E+NT+PG TP
Sbjct: 303 PEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTP 352
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 42 VKPTRAGSSIGVTV-----AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
VKP+RAGSS GVT A + D++ +A D RV+VE ++ E VL
Sbjct: 201 VKPSRAGSSFGVTKVESRDAKALADAVYEAS-----KHDWRVLVEQGID-AREIECAVLA 254
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
G + P P EV L D RE +D +++ KY+ + P P
Sbjct: 255 ARDGDE--PQASWPGEVVL------DKREAGEDQFYDFDSKYMDSAASHVEVPANLPEET 306
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+ +R A F+ +R+D + P G ++ +IN + G
Sbjct: 307 LQRVRNTALAAFKAADGRGLSRVDSFVTPE-----------------GHVMINEINTMPG 349
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
S + G S+S+++ +I
Sbjct: 350 FTPISMYPKAWEATGISYSDLITKLI 375
>gi|253998175|ref|YP_003050238.1| D-alanine--D-alanine ligase [Methylovorus glucosetrophus SIP3-4]
gi|253984854|gb|ACT49711.1| D-alanine/D-alanine ligase [Methylovorus glucosetrophus SIP3-4]
Length = 320
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 114/293 (38%), Gaps = 80/293 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA----DLGVL 481
VFI++HG GEDGT+Q LE G+PYTG GV+AS MDK T L D +L
Sbjct: 77 VFISLHGRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELL 136
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ D E L P + VKPA +G S G++++ + L K
Sbjct: 137 DASSDFAAVEQRLGLP----------------MFVKPANEGSSIGISKVKQSGAL----K 176
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
A E + P ++I E FV
Sbjct: 177 AAYELAAKSDP------------------LVIAERFVGGG-------------------- 198
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E TVG++G +P + + + + E K+ L P A
Sbjct: 199 -----EYTVGILGD-----EALPIIRIVPANEFYDFEAKYLRDDTQYLCP-----CGLPA 243
Query: 662 LDKCKQRIELIA--NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + R E + A+ G+ R+D F+ ++G +EVNT PGMT +++
Sbjct: 244 EQEARIRAEALQAFRAIGGRGWGRVD-FLMDESGRHYFLEVNTSPGMTDHSLV 295
>gi|308235015|ref|ZP_07665752.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis ATCC 14018 =
JCM 11026]
gi|311114197|ref|YP_003985418.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
gi|310945691|gb|ADP38395.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
Length = 381
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 120/294 (40%), Gaps = 57/294 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-------ATSLALNHLAD 477
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK A + +
Sbjct: 106 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIA 165
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L V D D I++ E +KL+ L VKP+R G S GV ++ +
Sbjct: 166 LDVRKFASDAANHFDAYANEILEQVEE--AKLEY-PLFVKPSRAGSSFGVTKVESRD--- 219
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSS-QSTNKNADR 596
KAL + + + + ++ E ++ EI + + + + +
Sbjct: 220 --AKALADAVYEASKHDWR---------------VLVEQGIDAREIECAVLAARDGDEPQ 262
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPA 654
W G V+ K +E+G+ + K+ ++ P
Sbjct: 263 ASWPGEV--------VLDK-------------REAGEDQFYDFDSKYMDSAASHVEVP-- 299
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E L + + A G SR+D+FV + G V+I E+NT+PG TP
Sbjct: 300 ANLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTP 352
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 42 VKPTRAGSSIGVTV-----AYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
VKP+RAGSS GVT A + D++ +A D RV+VE ++ E VL
Sbjct: 201 VKPSRAGSSFGVTKVESRDAKALADAVYEAS-----KHDWRVLVEQGID-AREIECAVLA 254
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154
G + P P EV L D RE +D +++ KY+ + P P
Sbjct: 255 ARDGDE--PQASWPGEVVL------DKREAGEDQFYDFDSKYMDSAASHVEVPANLPEET 306
Query: 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214
+ +R A F+ +R+D + P G ++ +IN + G
Sbjct: 307 LQRVRNTALAAFKAADGRGLSRVDSFVTPE-----------------GHVMINEINTMPG 349
Query: 215 MEQTSFLFQQASKVGFSHSNILRTII 240
S + G S+S+++ +I
Sbjct: 350 FTPISMYPKAWEATGISYSDLITKLI 375
>gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073]
gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89]
gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536]
gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1]
gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88]
gi|222155172|ref|YP_002555311.1| D-alanine--D-alanine ligase A [Escherichia coli LF82]
gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli M605]
gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA206]
gi|386598094|ref|YP_006099600.1| D-alanine--D-alanine ligase [Escherichia coli IHE3034]
gi|386605669|ref|YP_006111969.1| D-alanyl-alanine synthetase A [Escherichia coli UM146]
gi|386627965|ref|YP_006147685.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i2']
gi|386632885|ref|YP_006152604.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i14']
gi|386637794|ref|YP_006104592.1| D-alanine--D-alanine ligase [Escherichia coli ABU 83972]
gi|387615697|ref|YP_006118719.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG
857C]
gi|415836204|ref|ZP_11518633.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1]
gi|416334219|ref|ZP_11671212.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327]
gi|417082785|ref|ZP_11951013.1| D-alanyl-alanine synthetase A [Escherichia coli cloneA_i1]
gi|417284694|ref|ZP_12071989.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3003]
gi|417288818|ref|ZP_12076103.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
TW07793]
gi|417660954|ref|ZP_12310535.1| D-alanine--D-alanine ligase [Escherichia coli AA86]
gi|419699294|ref|ZP_14226910.1| D-alanyl-alanine synthetase A [Escherichia coli SCI-07]
gi|419915536|ref|ZP_14433901.1| D-alanyl-alanine synthetase A [Escherichia coli KD1]
gi|419945616|ref|ZP_14462054.1| D-alanyl-alanine synthetase A [Escherichia coli HM605]
gi|422356348|ref|ZP_16437037.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
gi|422363092|ref|ZP_16443640.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
gi|422368640|ref|ZP_16449045.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
gi|422378008|ref|ZP_16458231.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
gi|422378613|ref|ZP_16458820.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
gi|422748552|ref|ZP_16802465.1| D-alanine-D-alanine ligase [Escherichia coli H252]
gi|422753033|ref|ZP_16806860.1| D-alanine-D-alanine ligase [Escherichia coli H263]
gi|422838904|ref|ZP_16886876.1| D-alanine-D-alanine ligase A [Escherichia coli H397]
gi|425276250|ref|ZP_18667595.1| D-alanine--D-alanine ligase A [Escherichia coli ARS4.2123]
gi|425298572|ref|ZP_18688622.1| D-alanine--D-alanine ligase A [Escherichia coli 07798]
gi|432356726|ref|ZP_19599973.1| D-alanine-D-alanine ligase A [Escherichia coli KTE4]
gi|432361133|ref|ZP_19604330.1| D-alanine-D-alanine ligase A [Escherichia coli KTE5]
gi|432380010|ref|ZP_19622974.1| D-alanine-D-alanine ligase A [Escherichia coli KTE15]
gi|432385840|ref|ZP_19628739.1| D-alanine-D-alanine ligase A [Escherichia coli KTE16]
gi|432410451|ref|ZP_19653134.1| D-alanine-D-alanine ligase A [Escherichia coli KTE39]
gi|432435027|ref|ZP_19677428.1| D-alanine-D-alanine ligase A [Escherichia coli KTE188]
gi|432439695|ref|ZP_19682058.1| D-alanine-D-alanine ligase A [Escherichia coli KTE189]
gi|432444819|ref|ZP_19687128.1| D-alanine-D-alanine ligase A [Escherichia coli KTE191]
gi|432455310|ref|ZP_19697512.1| D-alanine-D-alanine ligase A [Escherichia coli KTE201]
gi|432464391|ref|ZP_19706499.1| D-alanine-D-alanine ligase A [Escherichia coli KTE205]
gi|432469815|ref|ZP_19711868.1| D-alanine-D-alanine ligase A [Escherichia coli KTE206]
gi|432494251|ref|ZP_19736069.1| D-alanine-D-alanine ligase A [Escherichia coli KTE214]
gi|432503090|ref|ZP_19744827.1| D-alanine-D-alanine ligase A [Escherichia coli KTE220]
gi|432512590|ref|ZP_19749833.1| D-alanine-D-alanine ligase A [Escherichia coli KTE224]
gi|432522535|ref|ZP_19759674.1| D-alanine-D-alanine ligase A [Escherichia coli KTE230]
gi|432567221|ref|ZP_19803748.1| D-alanine-D-alanine ligase A [Escherichia coli KTE53]
gi|432572377|ref|ZP_19808868.1| D-alanine-D-alanine ligase A [Escherichia coli KTE55]
gi|432582491|ref|ZP_19818901.1| D-alanine-D-alanine ligase A [Escherichia coli KTE57]
gi|432586681|ref|ZP_19823053.1| D-alanine-D-alanine ligase A [Escherichia coli KTE58]
gi|432591501|ref|ZP_19827830.1| D-alanine-D-alanine ligase A [Escherichia coli KTE60]
gi|432596267|ref|ZP_19832556.1| D-alanine-D-alanine ligase A [Escherichia coli KTE62]
gi|432606267|ref|ZP_19842463.1| D-alanine-D-alanine ligase A [Escherichia coli KTE67]
gi|432610116|ref|ZP_19846289.1| D-alanine-D-alanine ligase A [Escherichia coli KTE72]
gi|432644817|ref|ZP_19880620.1| D-alanine-D-alanine ligase A [Escherichia coli KTE86]
gi|432649910|ref|ZP_19885672.1| D-alanine-D-alanine ligase A [Escherichia coli KTE87]
gi|432654392|ref|ZP_19890111.1| D-alanine-D-alanine ligase A [Escherichia coli KTE93]
gi|432697699|ref|ZP_19932871.1| D-alanine-D-alanine ligase A [Escherichia coli KTE169]
gi|432712103|ref|ZP_19947155.1| D-alanine-D-alanine ligase A [Escherichia coli KTE8]
gi|432731104|ref|ZP_19965943.1| D-alanine-D-alanine ligase A [Escherichia coli KTE45]
gi|432744319|ref|ZP_19979024.1| D-alanine-D-alanine ligase A [Escherichia coli KTE43]
gi|432753179|ref|ZP_19987747.1| D-alanine-D-alanine ligase A [Escherichia coli KTE22]
gi|432758164|ref|ZP_19992687.1| D-alanine-D-alanine ligase A [Escherichia coli KTE46]
gi|432777234|ref|ZP_20011488.1| D-alanine-D-alanine ligase A [Escherichia coli KTE59]
gi|432782290|ref|ZP_20016476.1| D-alanine-D-alanine ligase A [Escherichia coli KTE63]
gi|432786030|ref|ZP_20020198.1| D-alanine-D-alanine ligase A [Escherichia coli KTE65]
gi|432800663|ref|ZP_20034653.1| D-alanine-D-alanine ligase A [Escherichia coli KTE84]
gi|432819701|ref|ZP_20053415.1| D-alanine-D-alanine ligase A [Escherichia coli KTE118]
gi|432825830|ref|ZP_20059487.1| D-alanine-D-alanine ligase A [Escherichia coli KTE123]
gi|432897167|ref|ZP_20108163.1| D-alanine-D-alanine ligase A [Escherichia coli KTE192]
gi|432902715|ref|ZP_20112395.1| D-alanine-D-alanine ligase A [Escherichia coli KTE194]
gi|432942255|ref|ZP_20139597.1| D-alanine-D-alanine ligase A [Escherichia coli KTE183]
gi|432970559|ref|ZP_20159437.1| D-alanine-D-alanine ligase A [Escherichia coli KTE207]
gi|432977104|ref|ZP_20165929.1| D-alanine-D-alanine ligase A [Escherichia coli KTE209]
gi|432984074|ref|ZP_20172813.1| D-alanine-D-alanine ligase A [Escherichia coli KTE215]
gi|432994177|ref|ZP_20182794.1| D-alanine-D-alanine ligase A [Escherichia coli KTE218]
gi|432998596|ref|ZP_20187136.1| D-alanine-D-alanine ligase A [Escherichia coli KTE223]
gi|433003908|ref|ZP_20192346.1| D-alanine-D-alanine ligase A [Escherichia coli KTE227]
gi|433011116|ref|ZP_20199521.1| D-alanine-D-alanine ligase A [Escherichia coli KTE229]
gi|433012556|ref|ZP_20200939.1| D-alanine-D-alanine ligase A [Escherichia coli KTE104]
gi|433022129|ref|ZP_20210155.1| D-alanine-D-alanine ligase A [Escherichia coli KTE106]
gi|433027422|ref|ZP_20215298.1| D-alanine-D-alanine ligase A [Escherichia coli KTE109]
gi|433037318|ref|ZP_20224939.1| D-alanine-D-alanine ligase A [Escherichia coli KTE113]
gi|433056720|ref|ZP_20243807.1| D-alanine-D-alanine ligase A [Escherichia coli KTE124]
gi|433071428|ref|ZP_20258130.1| D-alanine-D-alanine ligase A [Escherichia coli KTE129]
gi|433076580|ref|ZP_20263146.1| D-alanine-D-alanine ligase A [Escherichia coli KTE131]
gi|433081329|ref|ZP_20267804.1| D-alanine-D-alanine ligase A [Escherichia coli KTE133]
gi|433085986|ref|ZP_20272390.1| D-alanine-D-alanine ligase A [Escherichia coli KTE137]
gi|433099930|ref|ZP_20286042.1| D-alanine-D-alanine ligase A [Escherichia coli KTE145]
gi|433114333|ref|ZP_20300149.1| D-alanine-D-alanine ligase A [Escherichia coli KTE153]
gi|433118929|ref|ZP_20304643.1| D-alanine-D-alanine ligase A [Escherichia coli KTE157]
gi|433123950|ref|ZP_20309541.1| D-alanine-D-alanine ligase A [Escherichia coli KTE160]
gi|433138011|ref|ZP_20323298.1| D-alanine-D-alanine ligase A [Escherichia coli KTE167]
gi|433142944|ref|ZP_20328123.1| D-alanine-D-alanine ligase A [Escherichia coli KTE168]
gi|433147839|ref|ZP_20332905.1| D-alanine-D-alanine ligase A [Escherichia coli KTE174]
gi|433152526|ref|ZP_20337496.1| D-alanine-D-alanine ligase A [Escherichia coli KTE176]
gi|433162196|ref|ZP_20346961.1| D-alanine-D-alanine ligase A [Escherichia coli KTE179]
gi|433167171|ref|ZP_20351847.1| D-alanine-D-alanine ligase A [Escherichia coli KTE180]
gi|433181912|ref|ZP_20366215.1| D-alanine-D-alanine ligase A [Escherichia coli KTE85]
gi|433187187|ref|ZP_20371316.1| D-alanine-D-alanine ligase A [Escherichia coli KTE88]
gi|433196969|ref|ZP_20380898.1| D-alanine-D-alanine ligase A [Escherichia coli KTE94]
gi|433211312|ref|ZP_20394927.1| D-alanine-D-alanine ligase A [Escherichia coli KTE99]
gi|433324555|ref|ZP_20401842.1| D-alanyl-alanine synthetase A [Escherichia coli J96]
gi|442606645|ref|ZP_21021440.1| D-alanine--D-alanine ligase A [Escherichia coli Nissle 1917]
gi|29336710|sp|Q8FKE3.1|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName:
Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
synthetase A
gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073]
gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89]
gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536]
gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1]
gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88]
gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82]
gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034]
gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972]
gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146]
gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG
857C]
gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327]
gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1]
gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252]
gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263]
gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86]
gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli M605]
gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
(D-Ala-D-Ala ligase A) [Escherichia coli TA206]
gi|355353323|gb|EHG02493.1| D-alanyl-alanine synthetase A [Escherichia coli cloneA_i1]
gi|355418864|gb|AER83061.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i2']
gi|355423784|gb|AER87980.1| D-alanyl-alanine synthetase A [Escherichia coli str. 'clone D i14']
gi|371611375|gb|EHN99897.1| D-alanine-D-alanine ligase A [Escherichia coli H397]
gi|380349309|gb|EIA37581.1| D-alanyl-alanine synthetase A [Escherichia coli SCI-07]
gi|386242903|gb|EII84638.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
3003]
gi|386247610|gb|EII93783.1| D-ala D-ala ligase N-terminal domain protein [Escherichia coli
TW07793]
gi|388383880|gb|EIL45628.1| D-alanyl-alanine synthetase A [Escherichia coli KD1]
gi|388415219|gb|EIL75152.1| D-alanyl-alanine synthetase A [Escherichia coli HM605]
gi|408207286|gb|EKI32036.1| D-alanine--D-alanine ligase A [Escherichia coli ARS4.2123]
gi|408221575|gb|EKI45508.1| D-alanine--D-alanine ligase A [Escherichia coli 07798]
gi|430879536|gb|ELC02867.1| D-alanine-D-alanine ligase A [Escherichia coli KTE4]
gi|430891368|gb|ELC13904.1| D-alanine-D-alanine ligase A [Escherichia coli KTE5]
gi|430909889|gb|ELC31247.1| D-alanine-D-alanine ligase A [Escherichia coli KTE16]
gi|430911989|gb|ELC33240.1| D-alanine-D-alanine ligase A [Escherichia coli KTE15]
gi|430938387|gb|ELC58628.1| D-alanine-D-alanine ligase A [Escherichia coli KTE39]
gi|430966606|gb|ELC83969.1| D-alanine-D-alanine ligase A [Escherichia coli KTE188]
gi|430969505|gb|ELC86609.1| D-alanine-D-alanine ligase A [Escherichia coli KTE189]
gi|430976194|gb|ELC93069.1| D-alanine-D-alanine ligase A [Escherichia coli KTE191]
gi|430985182|gb|ELD01788.1| D-alanine-D-alanine ligase A [Escherichia coli KTE201]
gi|430997142|gb|ELD13409.1| D-alanine-D-alanine ligase A [Escherichia coli KTE205]
gi|430999882|gb|ELD15956.1| D-alanine-D-alanine ligase A [Escherichia coli KTE206]
gi|431027767|gb|ELD40812.1| D-alanine-D-alanine ligase A [Escherichia coli KTE214]
gi|431042092|gb|ELD52584.1| D-alanine-D-alanine ligase A [Escherichia coli KTE220]
gi|431044910|gb|ELD55165.1| D-alanine-D-alanine ligase A [Escherichia coli KTE224]
gi|431054655|gb|ELD64224.1| D-alanine-D-alanine ligase A [Escherichia coli KTE230]
gi|431103054|gb|ELE07724.1| D-alanine-D-alanine ligase A [Escherichia coli KTE53]
gi|431110715|gb|ELE14632.1| D-alanine-D-alanine ligase A [Escherichia coli KTE55]
gi|431119507|gb|ELE22506.1| D-alanine-D-alanine ligase A [Escherichia coli KTE57]
gi|431123961|gb|ELE26615.1| D-alanine-D-alanine ligase A [Escherichia coli KTE58]
gi|431132945|gb|ELE34943.1| D-alanine-D-alanine ligase A [Escherichia coli KTE60]
gi|431133934|gb|ELE35900.1| D-alanine-D-alanine ligase A [Escherichia coli KTE62]
gi|431140489|gb|ELE42255.1| D-alanine-D-alanine ligase A [Escherichia coli KTE67]
gi|431151429|gb|ELE52444.1| D-alanine-D-alanine ligase A [Escherichia coli KTE72]
gi|431184298|gb|ELE84056.1| D-alanine-D-alanine ligase A [Escherichia coli KTE86]
gi|431193281|gb|ELE92617.1| D-alanine-D-alanine ligase A [Escherichia coli KTE87]
gi|431195577|gb|ELE94546.1| D-alanine-D-alanine ligase A [Escherichia coli KTE93]
gi|431246893|gb|ELF41136.1| D-alanine-D-alanine ligase A [Escherichia coli KTE169]
gi|431259618|gb|ELF51981.1| D-alanine-D-alanine ligase A [Escherichia coli KTE8]
gi|431278508|gb|ELF69498.1| D-alanine-D-alanine ligase A [Escherichia coli KTE45]
gi|431295773|gb|ELF85505.1| D-alanine-D-alanine ligase A [Escherichia coli KTE43]
gi|431305560|gb|ELF93881.1| D-alanine-D-alanine ligase A [Escherichia coli KTE22]
gi|431311950|gb|ELG00098.1| D-alanine-D-alanine ligase A [Escherichia coli KTE46]
gi|431330808|gb|ELG18072.1| D-alanine-D-alanine ligase A [Escherichia coli KTE59]
gi|431332002|gb|ELG19245.1| D-alanine-D-alanine ligase A [Escherichia coli KTE63]
gi|431341961|gb|ELG28957.1| D-alanine-D-alanine ligase A [Escherichia coli KTE65]
gi|431351252|gb|ELG38042.1| D-alanine-D-alanine ligase A [Escherichia coli KTE84]
gi|431370703|gb|ELG56496.1| D-alanine-D-alanine ligase A [Escherichia coli KTE118]
gi|431375214|gb|ELG60558.1| D-alanine-D-alanine ligase A [Escherichia coli KTE123]
gi|431429977|gb|ELH11811.1| D-alanine-D-alanine ligase A [Escherichia coli KTE192]
gi|431437360|gb|ELH18870.1| D-alanine-D-alanine ligase A [Escherichia coli KTE194]
gi|431454723|gb|ELH35081.1| D-alanine-D-alanine ligase A [Escherichia coli KTE183]
gi|431482208|gb|ELH61911.1| D-alanine-D-alanine ligase A [Escherichia coli KTE209]
gi|431485696|gb|ELH65353.1| D-alanine-D-alanine ligase A [Escherichia coli KTE207]
gi|431506211|gb|ELH84809.1| D-alanine-D-alanine ligase A [Escherichia coli KTE215]
gi|431509511|gb|ELH87760.1| D-alanine-D-alanine ligase A [Escherichia coli KTE218]
gi|431514165|gb|ELH92007.1| D-alanine-D-alanine ligase A [Escherichia coli KTE223]
gi|431517229|gb|ELH94751.1| D-alanine-D-alanine ligase A [Escherichia coli KTE227]
gi|431519328|gb|ELH96780.1| D-alanine-D-alanine ligase A [Escherichia coli KTE229]
gi|431535891|gb|ELI12226.1| D-alanine-D-alanine ligase A [Escherichia coli KTE104]
gi|431541014|gb|ELI16464.1| D-alanine-D-alanine ligase A [Escherichia coli KTE106]
gi|431545932|gb|ELI20575.1| D-alanine-D-alanine ligase A [Escherichia coli KTE109]
gi|431555494|gb|ELI29334.1| D-alanine-D-alanine ligase A [Escherichia coli KTE113]
gi|431574163|gb|ELI46945.1| D-alanine-D-alanine ligase A [Escherichia coli KTE124]
gi|431593615|gb|ELI63907.1| D-alanine-D-alanine ligase A [Escherichia coli KTE129]
gi|431601157|gb|ELI70674.1| D-alanine-D-alanine ligase A [Escherichia coli KTE131]
gi|431605974|gb|ELI75358.1| D-alanine-D-alanine ligase A [Escherichia coli KTE133]
gi|431610148|gb|ELI79449.1| D-alanine-D-alanine ligase A [Escherichia coli KTE137]
gi|431622796|gb|ELI91481.1| D-alanine-D-alanine ligase A [Escherichia coli KTE145]
gi|431636833|gb|ELJ04952.1| D-alanine-D-alanine ligase A [Escherichia coli KTE153]
gi|431649278|gb|ELJ16636.1| D-alanine-D-alanine ligase A [Escherichia coli KTE157]
gi|431650053|gb|ELJ17390.1| D-alanine-D-alanine ligase A [Escherichia coli KTE160]
gi|431664980|gb|ELJ31707.1| D-alanine-D-alanine ligase A [Escherichia coli KTE167]
gi|431666632|gb|ELJ33259.1| D-alanine-D-alanine ligase A [Escherichia coli KTE168]
gi|431676732|gb|ELJ42815.1| D-alanine-D-alanine ligase A [Escherichia coli KTE174]
gi|431678582|gb|ELJ44578.1| D-alanine-D-alanine ligase A [Escherichia coli KTE176]
gi|431692234|gb|ELJ57672.1| D-alanine-D-alanine ligase A [Escherichia coli KTE179]
gi|431694126|gb|ELJ59511.1| D-alanine-D-alanine ligase A [Escherichia coli KTE180]
gi|431709733|gb|ELJ74181.1| D-alanine-D-alanine ligase A [Escherichia coli KTE88]
gi|431711808|gb|ELJ76115.1| D-alanine-D-alanine ligase A [Escherichia coli KTE85]
gi|431725738|gb|ELJ89577.1| D-alanine-D-alanine ligase A [Escherichia coli KTE94]
gi|431735967|gb|ELJ99309.1| D-alanine-D-alanine ligase A [Escherichia coli KTE99]
gi|432347069|gb|ELL41533.1| D-alanyl-alanine synthetase A [Escherichia coli J96]
gi|441711952|emb|CCQ07417.1| D-alanine--D-alanine ligase A [Escherichia coli Nissle 1917]
Length = 364
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + E+ SKL L VKPA G S GV+++ E T+ V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYTIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|241205551|ref|YP_002976647.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859441|gb|ACS57108.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 308
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 129/324 (39%), Gaps = 78/324 (24%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
GFD+ + + ++E KLA VF A+HG GEDGT+Q +LE +PYT GV+A
Sbjct: 35 GFDVT-RIDVARDVSE--KLAALKPDVVFNALHGPFGEDGTIQGILEYLEIPYTHSGVLA 91
Query: 459 SKTCMDKVATSLALNHLADLGVL---TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 515
S MDK L A + V +N+ +K P V
Sbjct: 92 SALAMDKDKAKLVAG-AAGIPVAESQVVNRFAFPATHPMKPPYV---------------- 134
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
VKP R+G S GV + ED +AH PP+I+
Sbjct: 135 VKPVREGSSFGV--VIVTED---------------------QAH--------PPQIVSSP 163
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL 635
+ +E++ + E+T GV+G+ L + V + +
Sbjct: 164 EWRYGEEVIVERYVYGR--------------ELTCGVMGET----PLGVTEVVPQGHNFY 205
Query: 636 SLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN---VDN 692
+ K+ G ++ P S + + R A+ G SR D + ++
Sbjct: 206 DYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAH---QAIGCRGVSRSDFRYDDRFSED 262
Query: 693 GEVLIIEVNTVPGMTPSTVLIHQA 716
GE++ +EVNT PGMTP++++ A
Sbjct: 263 GEIIWLEVNTQPGMTPTSLVPEMA 286
>gi|288819097|ref|YP_003433445.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
gi|384129843|ref|YP_005512456.1| D-alanine--D-alanine ligase [Hydrogenobacter thermophilus TK-6]
gi|288788497|dbj|BAI70244.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
gi|308752680|gb|ADO46163.1| D-alanine/D-alanine ligase [Hydrogenobacter thermophilus TK-6]
Length = 288
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 121/312 (38%), Gaps = 90/312 (28%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+ +P+ N KL + VFIA+HG GEDG +Q LL+ G+PYTG GV+ S M
Sbjct: 34 EAIPLDLEENLCQKLLEIKPDKVFIALHGTYGEDGRVQGLLDILGIPYTGSGVLGSCLAM 93
Query: 464 DKVATSLALNHLADLGVLTINKD-------VRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516
DK T +LT ++ VRR E WH + V
Sbjct: 94 DKDITK---------KILTFHRIPVPAGICVRRGETFE-------WHSFPA-------VV 130
Query: 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576
KPA G S G L +D A+ E L S +H ++LI E
Sbjct: 131 KPADQGSSVG---LFLVKDHDELENAVREVL--------SISH----------KVLIEEY 169
Query: 577 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILS 636
+ D ITVG++ +P V +K I
Sbjct: 170 IIGRD--------------------------ITVGILKG-----EALPPVEIKPKKGIYD 198
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA-LQLEGFSRIDAFVNVDNGEV 695
E K+ G + E L K Q I L+ + L+L+ SR+D F ++G
Sbjct: 199 YESKYTKGMS------DYVFLEDEKLIKKLQDIALMVHKYLELKDISRVD-FRLSEDGVA 251
Query: 696 LIIEVNTVPGMT 707
++E NT+PGMT
Sbjct: 252 YVLEANTIPGMT 263
>gi|339493064|ref|YP_004713357.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800436|gb|AEJ04268.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 314
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D D+L R L+ E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 50 GIDAGDDLLQR--------LSSERIDRAFIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 101
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T L VL D + +L P++
Sbjct: 102 SALAMDKLRTKQVWQSLGLPTPRHAVLASEADCQAAAQMLGFPLI--------------- 146
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ +L +A
Sbjct: 147 -VKPAHEGSSIGMAKVGDVAELIAAWRA 173
>gi|5353567|gb|AAD42184.1|AF130997_5 D-alanine:D-lactate ligase [Enterococcus faecium]
Length = 343
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 62/283 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDG++Q LLE G+PY G + +S CMDK +LA + + G+
Sbjct: 93 VVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQSSVICMDK---ALAYTVVKNAGITVPG 149
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ ++ D L+T D + + VKPAR G S GV ++C AE+L A+E
Sbjct: 150 FRILQEGDRLETE--DFVY---------PVFVKPARSGSSFGVNKVCKAEELQA---AIE 195
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E +R + +ILI E V E+ + N + LM G
Sbjct: 196 E----------ARKY--------DSKILI-EEAVTGSEV---GCAILGNGNDLM-AGEVD 232
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
+E+ G +H E + + G+ + PA+ + E ++
Sbjct: 233 QIELRHGFF----KIHQ----------------EAQPEKGSENAVIRVPAA-LPDEVREQ 271
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
++ I L G +RID F+ D G +++ EVNT+PG T
Sbjct: 272 IQETAMKIYRILGCRGLARIDLFLRED-GCIVLNEVNTMPGFT 313
>gi|409991184|ref|ZP_11274469.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca]
gi|291566125|dbj|BAI88397.1| D-alanine--D-alanine ligase [Arthrospira platensis NIES-39]
gi|409937961|gb|EKN79340.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca]
Length = 358
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 125/330 (37%), Gaps = 74/330 (22%)
Query: 422 NQATV------FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL 475
N ATV F +HG GEDGT+Q +L VPY G GV+ S MDK+A +A +
Sbjct: 83 NPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLGSAVGMDKIAMKMAFSQ- 141
Query: 476 ADLGVLTINKDVRRKEDLLKTPIV--DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
G+ + R+ + P + + +L + L VKPA G S G++++
Sbjct: 142 --AGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCF-VKPANLGSSVGISKVRSR 198
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
++L + A RI I E VE E+
Sbjct: 199 QELETALDAAATYDRRI----------------------IVEAGVEAREL---------- 226
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV----KESGDILSLEEKFQGGTGINL 649
+C + + P +V + D E K+ G +
Sbjct: 227 ---------------------ECAVLGNDYPKASVVGEISYNSDFYDYETKYTDGKANLM 265
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P P + T K + A+ G +R+D F GEVL+ E+NT+PG T +
Sbjct: 266 IPAP---IDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIEKTGEVLLNEINTLPGFT-A 321
Query: 710 TVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
+ Q S +P + ++++L ER
Sbjct: 322 LSMYPQLWSATGVSFP-ELVNQLIELALER 350
>gi|260220018|emb|CBA27135.1| D-alanine--D-alanine ligase [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 312
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 119/312 (38%), Gaps = 88/312 (28%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P +++E L +E FIA+HG GEDGT+Q LE G+PYTG GVMAS MDKV
Sbjct: 43 PSERALDE---LKREGFDRCFIALHGRFGEDGTVQGALELLGIPYTGSGVMASSISMDKV 99
Query: 467 ATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT--------LCVKP 518
T K + R E L TP W ++ S + + + VKP
Sbjct: 100 MT----------------KRIWRFEG-LSTP---AWQQVKSAAETQAAFAALGAPMIVKP 139
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
AR+G S G + V + ++C S +H ++ E F+
Sbjct: 140 AREGSSIGFTK----------VMSADQCDAAYALASQHDSH------------VLCEQFI 177
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
D E+T V G + +L P + + +
Sbjct: 178 AGD-------------------------EVTCPVWGPSSAPEAL-PVIRIVAPEGNYDYQ 211
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL---EGFSRIDAFVNVDNGEV 695
K+ T L P EA+ L+ A Q+ G++R D ++
Sbjct: 212 NKYFTDTTQYLVPAGLPAGEEEAIQA------LVCKAYQVLGCRGWARADVMIDAKTRTP 265
Query: 696 LIIEVNTVPGMT 707
++E+NT PGMT
Sbjct: 266 YLLEINTSPGMT 277
>gi|171462989|ref|YP_001797102.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|229485972|sp|B1XT11.1|DDL_POLNS RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|171192527|gb|ACB43488.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 337
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 121/298 (40%), Gaps = 67/298 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLAL--NH 474
+L KE +FI++HG GEDGT+Q LLE G+PYTG V+AS +DK+ T N
Sbjct: 74 ELVKEKFDRIFISLHGRFGEDGTIQGLLELLGLPYTGSAVLASALAIDKIVTKQVWISNG 133
Query: 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
LA E+L T W+ + L L VKPA +G S G+ +
Sbjct: 134 LA----------TPEYEELTAT---SDWNAVVQHLGLP-LIVKPAHEGSSLGLTK----- 174
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
VK++EE P ++ A G+ + +I E + DE+ K A
Sbjct: 175 -----VKSVEEL-----PAAYKLAAGL-------DKKVIAETCIIGDELTCPLVGQGKTA 217
Query: 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+ L + + P S E ++ TG L P
Sbjct: 218 EALP-------------------VIKIIPPQANYDFHNKYFSDETQYLCPTG--LAPEVN 256
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+ + T AL K AL + R D ++ G+ ++E+NT PGMT +++
Sbjct: 257 AAVQTLALAAYK--------ALGCRTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLV 306
>gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
Length = 333
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 109/300 (36%), Gaps = 63/300 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + VFIA+HG GEDG L+ LL+ GVPY G ++ DK L
Sbjct: 51 RLTADPPDAVFIAMHGSEGEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQ--- 107
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDI-WHELTSKLQCKT---LCVKPARDGCSTGVARLCC 532
R +T I D+ H+L + + L VKPAR G + GV
Sbjct: 108 -----AAGVAAPRSIAFSQTAIRDLGGHQLLDRCVRRLGLPLVVKPARGGSALGV---TI 159
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
+ T + AL C A+ + + E +V E+ S +
Sbjct: 160 VREATAFAHALVTCF----------AYDTVAL---------VEQYVVGTELAISVVEDDD 200
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
R +P V ++ + ++ G+
Sbjct: 201 GTPR-------------------------ALPPVEIRPVDGMFDYAARYT--AGMTEYHV 233
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
PA I T A D+ AL L SR D V D+ EVL +E N PGMTP+++L
Sbjct: 234 PARITET-ARDRAVDVALRAHQALGLRDLSRTDVIVTADD-EVLYLETNVAPGMTPTSLL 291
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL-EGIDDRVVVELFLEGGSEFTAIVLDVG 98
+VVKP R GS++GVT+ V ++ A ++ D +VE ++ G T + + V
Sbjct: 144 LVVKPARGGSALGVTI---VREATAFAHALVTCFAYDTVALVEQYVVG----TELAISVV 196
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
D P L P V++R D +F+Y +Y YH P R +
Sbjct: 197 EDDDGTPRALPP----------VEIRPVDGMFDYAARYT-AGMTEYHVPARITETARDRA 245
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A Q LGL D +R D V +++ + +L+ + N+ GM T
Sbjct: 246 VDVALRAHQALGLRDLSRTD---------VIVTADDE--------VLYLETNVAPGMTPT 288
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSRFPN 249
S L A++VG + R ++ A +R P+
Sbjct: 289 SLLPMAAAEVGIDLGTLCRDLLVRAATRGPS 319
>gi|398898352|ref|ZP_10648272.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM50]
gi|398184406|gb|EJM71859.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM50]
Length = 327
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCISAAAELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVTSASELIDAWKA 177
>gi|384429914|ref|YP_005639275.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. raphani
756C]
gi|341939018|gb|AEL09157.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv. raphani
756C]
Length = 368
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 109/474 (22%), Positives = 167/474 (35%), Gaps = 140/474 (29%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
V +IFGG ++E +VSL S N+ LQA + P L+ D
Sbjct: 5 RVGLIFGGKSAEHEVSLQSARNI---LQALDPQRFEPVLIGI---------------DKQ 46
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
+ S P S +L +A +P R A R V
Sbjct: 47 GQWHLSAPESFLL------------DADDPSRIALRHSGRGLAV---------------- 78
Query: 401 DIADELPMRHSINEWIKLAKENQA---TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
LP S A++ A VF VHG +GEDG+LQ LL +P+ G GV+
Sbjct: 79 -----LPGAASAQLCAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVL 133
Query: 458 ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC-- 515
S MDK + K V R L P ++ +TL
Sbjct: 134 GSAVAMDK----------------DMTKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQ 177
Query: 516 ------VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
VKPA G S GV+++ AE+ + ALE L
Sbjct: 178 FGLPLFVKPANQGSSVGVSQVRSAEEFSA---ALELAL---------------------- 212
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
+ +++ + EI V+G S+ V V
Sbjct: 213 ----------------------RYDHKVLVEAAIAGREIECAVLGNATPQASVCGEVVVH 250
Query: 630 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRID 685
++ S + K+ G A+++ + + RI+ A AL G +R+D
Sbjct: 251 DA--FYSYQTKYIRDDG------AATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVD 302
Query: 686 AFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
F+ D G ++I EVNT+PG T + ++ L E + ++++L ER
Sbjct: 303 VFLCAD-GRIVINEVNTLPGFT--RISMYPKLWEASGLDYRSLVTRLIELALER 353
>gi|257065509|ref|YP_003145181.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
gi|256793162|gb|ACV23832.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
Length = 317
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 141/345 (40%), Gaps = 80/345 (23%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
D A++ ++ I+E +A F+A+HG GEDGT+Q LE G+PYTG G+ AS
Sbjct: 47 LDTAEKADLKRLIDEPFDVA-------FLALHGRGGEDGTIQGFLETVGIPYTGSGINAS 99
Query: 460 KTCMDKVATSLALNHLADLGV-----LTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
++K S A + A G+ +TI++D E+L I DI T + C
Sbjct: 100 SVAINK---SKAKDAYAQAGLRVAASMTISEDDILDENL----ISDIVE--TCGIPC--- 147
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574
VKP +G S G+ + A D+ +K L + + +
Sbjct: 148 VVKPTTEGSSLGMTIVRDAADIAEAIKT----ALAVDVEA------------------MV 185
Query: 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD- 633
E F+ E +TVGVIG +P + + + D
Sbjct: 186 EQFISGTE-------------------------LTVGVIGN--DDAEALPVIQIVPTEDE 218
Query: 634 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNG 693
+ K+ G +L P P S TE + ++ L G SR D V+ D+
Sbjct: 219 FYNYHAKYAAGGSRHLCPAPVSRDVTENAQEMAVAAHMV---LGCRGVSRTDIIVDADD- 274
Query: 694 EVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738
++E NT+PGMT ++++ A + M Q K++ L E
Sbjct: 275 TCWVLETNTIPGMTGTSLVPDAA--KVAGMDFQQLCEKLIALALE 317
>gi|291562104|emb|CBL40920.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SS3/4]
Length = 353
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 126/323 (39%), Gaps = 74/323 (22%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDGT+Q +LE +PY G GV+AS MDK++T ++ L ++
Sbjct: 96 VVFPVLHGLYGEDGTVQGILELAKIPYVGCGVLASAVSMDKLSTKRMVSGLGICQAAYVS 155
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVK 541
++K + D+ + SK++ + + VKP+ G S GV R E+L
Sbjct: 156 --------VMKAELKDM-DAVISKIEKEIPYPVFVKPSNAGSSRGVTRADNREELIT--- 203
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
G+ E + IL+ E V
Sbjct: 204 ------------------GLKEAADNDRRILVEEMIVGR--------------------- 224
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
EI GV G S + G+IL+ E F +++ E
Sbjct: 225 -----EIECGVFGDGDSTKA-------SGVGEILAAAE-FYDFDAKYYNAESKTVVDPEL 271
Query: 662 LDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
D +R+ A NA+ G SR+D FV D G V+ E+NT+PG T + ++ L
Sbjct: 272 PDGATERVREAAVKIFNAVDGYGLSRVDFFVKAD-GTVVFNEINTLPGFT--AISMYPML 328
Query: 718 SEQPPMYPHQFFRKVLDLGSERF 740
E + Q ++D R+
Sbjct: 329 WEARGVDKRQLIDDLIDHAFRRY 351
>gi|5305926|gb|AAD41882.1|AF153050_3 D-alanine:D-lactate ligase [Enterococcus faecium]
gi|222159814|gb|ACM47287.1| D-Ala:D-Lac ligase VanD [Enterococcus faecium]
Length = 343
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 14/117 (11%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
VF +HG GEDG++Q LLE G+PY G + +S CMDK +LA + + G+
Sbjct: 93 VVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQSSVICMDK---ALAYTVVKNAGIAVPG 149
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ ++ D L+T D+ + + VKPAR G S GV ++C AE+L ++
Sbjct: 150 FRILQEGDRLETE--DLVYPVF---------VKPARSGSSFGVNKVCKAEELQAAIR 195
>gi|400293218|ref|ZP_10795097.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
naeslundii str. Howell 279]
gi|399901659|gb|EJN84535.1| D-ala D-ala ligase N-terminal domain protein [Actinomyces
naeslundii str. Howell 279]
Length = 388
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 119/288 (41%), Gaps = 60/288 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
V +HG GEDGT+Q +LE VPY G GV+AS MDK T + L G+ T
Sbjct: 121 VLPLLHGPYGEDGTIQGMLEMMSVPYVGCGVLASAAGMDKQVTKVLLGA---AGIATAPH 177
Query: 486 DVRRKEDLLKTP--IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
V + P I+ L+ L VKP+R G S G++++ EDL
Sbjct: 178 VVVGPHAWKRDPEAILTACQSLSYP-----LFVKPSRAGSSLGISKVERPEDL------- 225
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603
P++ A + P++L+ V + + Q +A R+ G
Sbjct: 226 --------PDAIEAARAV------DPKVLVESGIVGREVEVAVLQGRGDDAPRVAEPG-- 269
Query: 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA-- 661
EI + T + +G+ E K+ + + PA I E
Sbjct: 270 ---EIAMD---------------TSQGAGEFYDFETKYLAHDAVAMV-CPARIGPEERAL 310
Query: 662 -LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+D + E A+ EG +R+D F+ + GE ++ E+NT+PG TP
Sbjct: 311 IMDTAARAFE----AVGCEGLARVDFFLT-ETGEAVVNEINTMPGFTP 353
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 42 VKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP+RAGSS+G++ + D+++ A+ +D +V+VE + G E VL G
Sbjct: 205 VKPSRAGSSLGISKVERPEDLPDAIEAAR-----AVDPKVLVESGIV-GREVEVAVLQ-G 257
Query: 99 SGFDCHPVVLLPTEVELQF-QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G D P V P E+ + QG+ + +++ KYL VA P R
Sbjct: 258 RGDDA-PRVAEPGEIAMDTSQGAGE------FYDFETKYLAHDAVAMVCPARIGPEERAL 310
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
I + A+ F+ +G AR+D +FL TE G + +IN + G
Sbjct: 311 IMDTAARAFEAVGCEGLARVD-FFL----------------TETGEAVVNEINTMPGFTP 353
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S G +++++ +I
Sbjct: 354 FSMYPYMWQVSGLGYTDLVSELI 376
>gi|374370442|ref|ZP_09628446.1| D-alanine--D-alanine ligase [Cupriavidus basilensis OR16]
gi|373098094|gb|EHP39211.1| D-alanine--D-alanine ligase [Cupriavidus basilensis OR16]
Length = 327
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 118/296 (39%), Gaps = 74/296 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS-LALNHL 475
+LA VFIA+HG GEDGT+Q LLE GVPYTG GV+AS MDK AT L H
Sbjct: 61 ELATAGFDRVFIALHGRYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWTTH- 119
Query: 476 ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED 535
G+ T + R + + + L VKPAR+G S G+ ++ A
Sbjct: 120 ---GLPTPRFAMLRDDTDFDAVVAGL---------GLPLIVKPAREGSSIGLTKVTEAGQ 167
Query: 536 LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595
+ +F +A + +I E F++
Sbjct: 168 MRA---------------AFDKAAAL-------DNDVIAETFIDG--------------- 190
Query: 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655
E+T ++G+ S +L P + + G + K+ T
Sbjct: 191 ----------AELTCPIVGEGASAEAL-PVIRIVAPGANYDYQNKY-------FTDDTQY 232
Query: 656 IMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + D + + +A L G++R D ++ D G+ ++E+NT PGMT
Sbjct: 233 LCPSGLPDDVEAEVRRLAVQSFRVLGCRGWARADVMLSAD-GKPFLLEMNTSPGMT 287
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 41/207 (19%)
Query: 40 VVVKPTRAGSSIG---VTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96
++VKP R GSSIG VT A + + KA +D+ V+ E F++ G+E T ++
Sbjct: 146 LIVKPAREGSSIGLTKVTEAGQMRAAFDKAA-----ALDNDVIAETFID-GAELTCPIVG 199
Query: 97 VGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156
G+ + PV + + A ++Y+ KY T Y P P V
Sbjct: 200 EGASAEALPV--------------IRIVAPGANYDYQNKYF-TDDTQYLCPSGLPDDVEA 244
Query: 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216
+R A F+ LG +AR D V S++ G ++N GM
Sbjct: 245 EVRRLAVQSFRVLGCRGWARAD---------VMLSAD--------GKPFLLEMNTSPGMT 287
Query: 217 QTSFLFQQASKVGFSHSNILRTIIGHA 243
S + A VG S+ + + + A
Sbjct: 288 GHSLVPMAARAVGISYEDFVMQVTAAA 314
>gi|365830083|ref|ZP_09371668.1| D-alanine-D-alanine ligase [Coprobacillus sp. 3_3_56FAA]
gi|365263837|gb|EHM93659.1| D-alanine-D-alanine ligase [Coprobacillus sp. 3_3_56FAA]
Length = 349
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 69/303 (22%)
Query: 407 PMRHSINEWI--KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
P R ++ E + K+ + V +HG GEDGT+Q L+E +P G G++AS CMD
Sbjct: 78 PERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVLGCGLLASALCMD 137
Query: 465 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS 524
K + L + + + V +V ++ K L VKP + G S
Sbjct: 138 KYRA----HQLVKAAGIKVTRSV----------LVHNINDFNVKALNFPLFVKPLKAGSS 183
Query: 525 TGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584
G++++ E+LT KALE N E+++ E VE E+
Sbjct: 184 YGISKVVKVEELT---KALEYAF------------------NYDNEVIV-EEAVEGFEV- 220
Query: 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGG 644
GN E+TVG + + ++ SG +EK+
Sbjct: 221 -----------GCAIIGND---ELTVGEVDE------------IELSGGFFDYDEKYTLK 254
Query: 645 TGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704
T + PA I A K ++ ++I L + F+R+D F+ +N E++ EVNT+P
Sbjct: 255 T--STIHMPARIDEVTA-RKIQETAKIIYQTLACQNFARVDMFLTPNN-EIVFNEVNTIP 310
Query: 705 GMT 707
G T
Sbjct: 311 GFT 313
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 38/201 (18%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP +AGSS G++ V + L KA D+ V+VE +EG +VG
Sbjct: 175 VKPLKAGSSYGISKVVKV-EELTKALEYAF-NYDNEVIVEEAVEG--------FEVGCAI 224
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY-LPTQQVAYHTPPRFPIVVINSIRE 160
+ + + E++ G F+Y KY L T + H P R V I+E
Sbjct: 225 IGNDELTVGEVDEIELSG--------GFFDYDEKYTLKTSTI--HMPARIDEVTARKIQE 274
Query: 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 220
A +++Q L +FAR+D + P++ I+F ++N I G S
Sbjct: 275 TAKIIYQTLACQNFARVDMFLTPNN-----------------EIVFNEVNTIPGFTDHSR 317
Query: 221 LFQQASKVGFSHSNILRTIIG 241
Q VGF S ++ I+
Sbjct: 318 FPQMMKGVGFEFSELIDKIVA 338
>gi|32130422|sp|Q9PF79.2|DDL_XYLFA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
Length = 304
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 117/303 (38%), Gaps = 82/303 (27%)
Query: 426 VFIAVHG--GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS---LALN----HLA 476
VF +HG G GEDG +Q L++A GVPYTG V+ S MDKV T LAL A
Sbjct: 58 VFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYA 117
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L V +VR+ ++L P++ +KPA++G S GV+R+ E
Sbjct: 118 SLSVCATAVEVRQAVEMLGFPVI----------------IKPAKEGSSVGVSRVFALEH- 160
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE + +R G L+ E +E D
Sbjct: 161 ------LEEAV-----ALAARYEGE----------LLMEQLIEGD--------------- 184
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TV ++ + +PS+ + G K+ + P +
Sbjct: 185 ----------ELTVSILDEMA-----LPSIRIVPQGQWYDYNAKYLAEDTQYVCPGLDDV 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E + G+ R+D +G ++EVNT PGMT + L+ +A
Sbjct: 230 AEAEIARLALAAFRAVG----CRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHS-LVPKA 284
Query: 717 LSE 719
S+
Sbjct: 285 ASQ 287
>gi|420152488|ref|ZP_14659532.1| D-ala D-ala ligase N-terminal-like domain protein [Actinomyces
massiliensis F0489]
gi|394764613|gb|EJF46352.1| D-ala D-ala ligase N-terminal-like domain protein [Actinomyces
massiliensis F0489]
Length = 331
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 36/190 (18%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVVKP + GS +GV++A+ D L+ A + D+R ++E ++ G +E V+DVG
Sbjct: 161 VVVKPNQGGSGLGVSLAHDA-DELRNAM-VACFAYDERALIEQYVPG-TEVAISVVDVGE 217
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G P L P EV V E D +++ +Y P + Y P R + ++
Sbjct: 218 G----PKALPPVEV---------VSEGD--YDFDARYNPGRS-EYFVPARLSPTLFEQVQ 261
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
E A L+ Q LGL + +R D E GT F D+N++ GM +TS
Sbjct: 262 ETAVLVHQTLGLGNLSRTDLIL-----------------DENGTPWFIDVNVVPGMTETS 304
Query: 220 FLFQQASKVG 229
L A G
Sbjct: 305 LLPLAAKAAG 314
>gi|366160680|ref|ZP_09460542.1| D-alanyl-alanine synthetase A [Escherichia sp. TW09308]
Length = 364
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 114/285 (40%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R K + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHKIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTNEEQYAIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ +
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPDIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + AL G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAIQAYQALGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|339626610|ref|YP_004718253.1| D-alanine--D-alanine ligase [Sulfobacillus acidophilus TPY]
gi|379006062|ref|YP_005255513.1| D-alanine--D-alanine ligase [Sulfobacillus acidophilus DSM 10332]
gi|339284399|gb|AEJ38510.1| D-alanine--D-alanine ligase [Sulfobacillus acidophilus TPY]
gi|361052324|gb|AEW03841.1| D-alanine--D-alanine ligase [Sulfobacillus acidophilus DSM 10332]
Length = 349
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 122/290 (42%), Gaps = 62/290 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLALNHLADLGVLTIN 484
VF+A HG GEDGTLQ LLE G+PYTG G +AS M+K A L H G+ T
Sbjct: 89 VFLAFHGTFGEDGTLQGLLETLGIPYTGSGPLASALAMNKAKAKELFQYH----GLATPP 144
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
V + + ++ + + S+L L VKP G S G A + A DL KAL
Sbjct: 145 GVVLSRRE-IQASLSSCAAYVKSRL-TYPLVVKPNVGGSSLGAAMVDDAVDLE---KALA 199
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
+ SR + VE +R+ +
Sbjct: 200 DA---------SRYD--------------LDVLVE---------------ERISGR---- 217
Query: 605 WVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
E T V+ + +P + + +SG K+Q G + P P +A+
Sbjct: 218 --EFTCAVLEEMDGQLRALPVIEIIPKSGRFFDFTAKYQTGAADEICPAPIP----DAMR 271
Query: 664 KCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
Q + + A + L EG SR D + D G VL +EVNT+PGMT ++++
Sbjct: 272 DTIQHMAIKAHDVLGCEGLSRAD-MIWTDQGPVL-LEVNTIPGMTRNSLV 319
>gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division
[Alteromonadales bacterium TW-7]
gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division
[Alteromonadales bacterium TW-7]
Length = 306
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 123/304 (40%), Gaps = 83/304 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+ HL
Sbjct: 55 ELKELNVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCK----HLF 110
Query: 477 DLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
L+ D ++ D H + ++ K + VKP+ +G S G+A+
Sbjct: 111 KSAGLSTAPYAVVDAKKGFDA---------HAIMAEF--KKVMVKPSHEGSSIGMAQATT 159
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
A++ LE+ L+ N+F F SQ +
Sbjct: 160 AQE-------LEDALI----NAFK----------------------------FDSQVLVE 180
Query: 593 NADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
+W+ E TV V+G + P + + + K+Q T
Sbjct: 181 -----------QWITGREFTVTVLGD-----EVQPVIEMTTPNGFYDYQAKYQSNTTQYH 224
Query: 650 TPPPASIMSTEALDKCK-QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
P S T+ L + +L+ + G+ R+DA + + G ++EVNTVPGMT
Sbjct: 225 CPANLSTHDTQQLQAMSLEAFDLVGAS----GWGRVDAMQD-EQGNFYLLEVNTVPGMTE 279
Query: 709 STVL 712
+++
Sbjct: 280 KSLV 283
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 45/205 (21%)
Query: 39 KVVVKPTRAGSSIGV---TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 95
KV+VKP+ GSSIG+ T A + D+L A D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQATTAQELEDALINAF-----KFDSQVLVEQWIT-GREFTVTVL 193
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
G + PV+ + T + ++Y+ KY + YH P
Sbjct: 194 ----GDEVQPVIEMTT--------------PNGFYDYQAKY-QSNTTQYHCPANLSTHDT 234
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
++ + F +G + R+D E G ++N + GM
Sbjct: 235 QQLQAMSLEAFDLVGASGWGRVDAM-----------------QDEQGNFYLLEVNTVPGM 277
Query: 216 EQTSFLFQQASKVGFSHSNILRTII 240
+ S + A G S ++ I+
Sbjct: 278 TEKSLVPMAAKANGASFEQLVVRIL 302
>gi|398937647|ref|ZP_10667356.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM41(2012)]
gi|398166764|gb|EJM54855.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM41(2012)]
Length = 318
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L ++ +NE I A FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDL-LQRLLNEKIDRA-------FIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVTSASELIDAWKA 177
>gi|229820087|ref|YP_002881613.1| D-alanyl-alanine synthetase A [Beutenbergia cavernae DSM 12333]
gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
Length = 372
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 116/285 (40%), Gaps = 64/285 (22%)
Query: 430 VHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA-DLGVLTINKDVR 488
+HG GEDGT+Q +LE GVPY G GV+AS MDK + L +G T+
Sbjct: 112 LHGPFGEDGTIQGMLELAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYTVLTPSA 171
Query: 489 RKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLL 548
+ D + +D L + VKPAR G S G+ R+ E L V+A+EE
Sbjct: 172 WRRD--RAACLDQVASLG-----LPVFVKPARAGSSIGITRV---ESLDRLVEAIEEAQR 221
Query: 549 RIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEI 608
P +++ + T + EI
Sbjct: 222 HDP------------------------------KVIVEAAITGR--------------EI 237
Query: 609 TVGVIGKCGSM--HSLMPS---VTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663
V V+ G + MP VT E G E K+ G++L P + + D
Sbjct: 238 EVAVLEGRGDEPPRTTMPGEIVVTNAEHG-FYDYEAKYFDSAGVDLRCP--ADLPPGVAD 294
Query: 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ ++ +AL EG +R+D F +G +++ E+NT+PG TP
Sbjct: 295 EARRLAAEAFDALGCEGLARVD-FFYTPSGTLVVNEINTMPGFTP 338
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
V VKP RAGSSIG+T ++SL + I E D +V+VE + G E VL+
Sbjct: 190 VFVKPARAGSSIGITR----VESLDRLVEAIEEAQRHDPKVIVEAAITG-REIEVAVLE- 243
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G G D P +P E+ V + ++Y KY + V P P V +
Sbjct: 244 GRG-DEPPRTTMPGEI-------VVTNAEHGFYDYEAKYFDSAGVDLRCPADLPPGVADE 295
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 201
R A+ F LG AR+D ++ PS T V + T G T +
Sbjct: 296 ARRLAAEAFDALGCEGLARVDFFYTPSGTLVVNEINTMPGFTPF 339
>gi|404449328|ref|ZP_11014318.1| D-alanyl-alanine synthetase A [Indibacter alkaliphilus LW1]
gi|403765016|gb|EJZ25901.1| D-alanyl-alanine synthetase A [Indibacter alkaliphilus LW1]
Length = 328
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 124/314 (39%), Gaps = 77/314 (24%)
Query: 412 INEWIKLAKENQAT---VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVAT 468
+N++ L + + T VF +HG GEDG L + G+PYT + S M+K T
Sbjct: 61 LNDFSILVNDQKITFDGVFNILHGSPGEDGKLAGYFDMLGLPYTTCDALTSAITMNKGYT 120
Query: 469 SLALNHLADLGV-----LTINKDVRRKEDL--LKTPIVDIWHELTSKLQCKTLCVKPARD 521
+ + +L V L N + R++ L L+ P L +KP
Sbjct: 121 KSIVKDIDELYVARSLQLFKNSEENREKILKDLRLP----------------LFIKPNSG 164
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S G++++ PN A + + F E
Sbjct: 165 GSSIGMSKVK-------------------DPNELKDA--------------LDKAFAEDK 191
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKF 641
++L + + E ++GV G +++P+ + S + E K+
Sbjct: 192 QVLVEEFVSGR--------------EFSIGVYAAKGKT-TVLPATEIVSSKEFFDFEAKY 236
Query: 642 QGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 701
G +TP MS E + + + IE + + L +G RID F+ + G+ IE+N
Sbjct: 237 SPGVTEEITP---GRMSEEEVSRVNRIIEQVYSRLNCKGAVRIDYFLEHETGKFYFIEIN 293
Query: 702 TVPGMTPSTVLIHQ 715
TVPG T ++++ Q
Sbjct: 294 TVPGQTETSLISQQ 307
>gi|299538289|ref|ZP_07051574.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
gi|424736336|ref|ZP_18164796.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZB2]
gi|298726491|gb|EFI67081.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
gi|422949939|gb|EKU44312.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZB2]
Length = 359
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 133/324 (41%), Gaps = 78/324 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F +HG GEDGT+Q LLE +PY G GV+AS MDKV L +A L +
Sbjct: 94 IFPLLHGTNGEDGTVQGLLEVLNLPYVGNGVLASSAGMDKVVMK-QLFEIAGLPQVPYTY 152
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKT-----LCVKPARDGCSTGVARLCCAEDLTVYV 540
+R + + I++ +C+ + VKPA G S G+++ E L V
Sbjct: 153 FIRSEWKNEQQAIIE---------RCENNLNWPMFVKPANLGSSVGISKATDREQL---V 200
Query: 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK 600
KA+E L + R +I++ + V
Sbjct: 201 KAIEVAL------QYDR------------KIVVEQGIV---------------------- 220
Query: 601 GNSRWVEITVGVIGKCGSMHSLMPSVTV----KESGDILSLEEKFQGGTGINLTPPPASI 656
+R VE+ V + + P V+V K D + K++ G+ + P +
Sbjct: 221 --AREVELAV--------LGNDYPEVSVPGEIKPVTDFYDYDSKYKDGSTALIIPAELPV 270
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ +L + +R A+ G R D FV +N V I EVNT+PG TP V ++
Sbjct: 271 ETVASLKELAKR---AFKAIDGSGLVRADFFVTAENN-VYINEVNTMPGFTP--VSMYPL 324
Query: 717 LSEQPPMYPHQFFRKVLDLGSERF 740
L + + + +++ L ER+
Sbjct: 325 LWQHTNVSYPELIDRLITLAIERY 348
>gi|392536661|ref|ZP_10283798.1| D-alanine-D-alanine ligase B [Pseudoalteromonas marina mano4]
Length = 306
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 123/304 (40%), Gaps = 83/304 (27%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L + N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+ HL
Sbjct: 55 ELKELNVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCK----HLF 110
Query: 477 DLGVLTINK----DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
L+ D ++ D H + ++ K + VKP+ +G S G+A+
Sbjct: 111 KSAGLSTAPYAVVDAKKGFDA---------HAIMAEF--KKVMVKPSHEGSSIGMAQATT 159
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
A++ LE+ L+ N+F F SQ +
Sbjct: 160 AQE-------LEDALI----NAFK----------------------------FDSQVLVE 180
Query: 593 NADRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
+W+ E TV V+G + P + + + K+Q T
Sbjct: 181 -----------QWITGREFTVTVLGD-----EVQPVIEMTTPNGFYDYQAKYQSNTTQYH 224
Query: 650 TPPPASIMSTEALDKCK-QRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
P S T+ L + +L+ + G+ R+DA + + G ++EVNTVPGMT
Sbjct: 225 CPANLSAHDTQQLQAMSLEAFDLVGAS----GWGRVDAMQD-EQGNFYLLEVNTVPGMTE 279
Query: 709 STVL 712
+++
Sbjct: 280 KSLV 283
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 45/205 (21%)
Query: 39 KVVVKPTRAGSSIGV---TVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVL 95
KV+VKP+ GSSIG+ T A + D+L A D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQATTAQELEDALINAF-----KFDSQVLVEQWIT-GREFTVTVL 193
Query: 96 DVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVI 155
G + PV+ + T + ++Y+ KY + YH P
Sbjct: 194 ----GDEVQPVIEMTT--------------PNGFYDYQAKY-QSNTTQYHCPANLSAHDT 234
Query: 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
++ + F +G + R+D E G ++N + GM
Sbjct: 235 QQLQAMSLEAFDLVGASGWGRVDAM-----------------QDEQGNFYLLEVNTVPGM 277
Query: 216 EQTSFLFQQASKVGFSHSNILRTII 240
+ S + A G S ++ I+
Sbjct: 278 TEKSLVPMAAKANGASFEQLVVRIL 302
>gi|419953360|ref|ZP_14469505.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri TS44]
gi|387969952|gb|EIK54232.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri TS44]
Length = 314
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 39/156 (25%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L +E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 50 GIDVGDDLLQR--------LDRERIDRAFIVLHGRGGEDGSMQGLLECAGIPYTGSGILA 101
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT----- 513
S MDK+ T L L TP L S C+T
Sbjct: 102 SALAMDKLRTKQVWQSLG-----------------LPTP---RHAALASVEDCQTAAAEL 141
Query: 514 ---LCVKPARDGCSTGVARLCCAEDLTVYVKALEEC 546
L VKPA +G S G+A++ +D+ V A E
Sbjct: 142 GFPLMVKPAHEGSSIGMAKV---DDVEALVAAWREA 174
>gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
224-1]
gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
gi|190359189|sp|Q046V3.2|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
224-1]
gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
Length = 361
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 171/461 (37%), Gaps = 117/461 (25%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V +IFGG++SE +VS+MS N++ + N +V P + + G AN D+
Sbjct: 6 KVGLIFGGNSSEYEVSIMSAHNIYEEIDT-NKFDVYPMWI-----TNDGYLAN----DAD 55
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
SR V P +E P + A S++
Sbjct: 56 SRKVLDNP---------------KMEVANPHKVANISNIV-------------------- 80
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
EL R I+ + F VHG +GEDG LQ L P+ G V+A+
Sbjct: 81 ----ELKDRPEIDVF-----------FPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAA 125
Query: 461 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVKPA 519
MDK T + LA + + K + K P + + +E + L VKP+
Sbjct: 126 VTMDKEMTKI----LAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPS 181
Query: 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579
G S GV+ + ++ V + E F
Sbjct: 182 NQGSSVGVSHVTNEKEYKV---------------------------------ALAEAFKY 208
Query: 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE 639
D++L + + GN + + VG I + K+S + E
Sbjct: 209 DDKVLVEETVHGTEVETAVL-GNDKPIVAGVGQI------------INAKDS--FYTYEN 253
Query: 640 KFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIE 699
K+ + L P + ++K ++ + A + G +RID+ + ++ EV++ E
Sbjct: 254 KYDDNSTSTLEIPAK--LPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEDKEVVLTE 311
Query: 700 VNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740
VN +PG T + ++ L E+ + K++D ER+
Sbjct: 312 VNALPGFT--NISMYPKLFEEVGIPYTDLITKLIDYAMERY 350
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 37/208 (17%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDVGS 99
VKP+ GSS+GV+ + + K+ K + E DD+V+VE + G TA++
Sbjct: 178 VKPSNQGSSVGVSH----VTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVL----- 228
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G D P+V ++ + KD+ + Y KY P + P ++ +R
Sbjct: 229 GND-KPIVAGVGQI---------INAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVR 278
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ A +FQ ARID TE ++ T++N + G S
Sbjct: 279 KNALKVFQATECSGLARIDSML----------------RTEDKEVVLTEVNALPGFTNIS 322
Query: 220 FLFQQASKVGFSHSNILRTIIGHACSRF 247
+ +VG +++++ +I +A R+
Sbjct: 323 MYPKLFEEVGIPYTDLITKLIDYAMERY 350
>gi|404378328|ref|ZP_10983422.1| D-alanine-D-alanine ligase [Simonsiella muelleri ATCC 29453]
gi|294484196|gb|EFG31879.1| D-alanine-D-alanine ligase [Simonsiella muelleri ATCC 29453]
Length = 306
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 117/305 (38%), Gaps = 77/305 (25%)
Query: 414 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL--- 470
E +L + F +HG GEDGT+Q LEA +PYTG GV+AS MDK + L
Sbjct: 48 ELFELKNQGFDIAFNTLHGSYGEDGTVQGALEALAIPYTGCGVLASAIGMDKYRSKLLWQ 107
Query: 471 ALN-HLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529
ALN + +LT D E L P+ +KPA +G S GV +
Sbjct: 108 ALNLPVPPFVILTDTSDFTAVEAQLGLPMF----------------IKPAAEGSSVGVYK 151
Query: 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQS 589
+ +L + L + HG EI+
Sbjct: 152 IKTVGELQQKYQELRD----------QHMHG---------EIM----------------- 175
Query: 590 TNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINL 649
A++ M G E T GVI PS+ + + E K+ I L
Sbjct: 176 ----AEKFMSGG-----EYTCGVI-----YRKAFPSIKIIPQNEFYDYEAKYNRDDTIYL 221
Query: 650 TPPPASIMSTEAL--DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P I + E L D + E I R+D F+ +G++ I+E NT+PGMT
Sbjct: 222 CPSDL-IPADEQLMRDLALKAFEAIGGG---NNCGRVD-FLRDADGKIYILEANTLPGMT 276
Query: 708 PSTVL 712
+++
Sbjct: 277 SHSLI 281
>gi|432371157|ref|ZP_19614221.1| D-alanine-D-alanine ligase A [Escherichia coli KTE11]
gi|430900370|gb|ELC22389.1| D-alanine-D-alanine ligase A [Escherichia coli KTE11]
Length = 364
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 115/285 (40%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R K + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHKIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTNEEQYAIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L FE F +++ +
Sbjct: 210 -----------------------------LAFE---------FDH--------KVIIEQG 223
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ EI V+G S + + + D + + K+ G + P A ++ +
Sbjct: 224 IKGREIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPDIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + AL G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAIQAYQALGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|226365967|ref|YP_002783750.1| D-alanyl-alanine synthetase A [Rhodococcus opacus B4]
gi|254767736|sp|C1B2N8.1|DDL_RHOOB RecName: Full=D-alanine--D-alanine ligase; AltName:
Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
synthetase
gi|226244457|dbj|BAH54805.1| D-alanine--D-alanine ligase [Rhodococcus opacus B4]
Length = 368
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 102/250 (40%), Gaps = 54/250 (21%)
Query: 282 VFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS 341
V VIFGG ++E VS +S +V NL EV P + + G TDP+S S
Sbjct: 8 VAVIFGGRSNEHSVSCVSAGSVLRNLDP-ERYEVVPIGITTEGSWVLGS----TDPESLS 62
Query: 342 RVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFD 401
SLP +++ D +A DLV D
Sbjct: 63 IRGRSLP------------------SVDADGSALALTADPTRSGDLV----------ALD 94
Query: 402 IADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKT 461
+ + S++ VF +HG GEDGT+Q LLE GVPY GPGV+AS
Sbjct: 95 DGEAGKILASVD-----------VVFPVLHGAYGEDGTIQGLLELAGVPYVGPGVLASAA 143
Query: 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD 521
MDK T LA G L I V +L+ + E S+L VKPAR
Sbjct: 144 GMDKEFTK---KLLAAEG-LPIGFQV-----VLRPGTATLTDEQRSRLHLPVF-VKPARG 193
Query: 522 GCSTGVARLC 531
G S G+ R+
Sbjct: 194 GSSIGITRVA 203
>gi|392960458|ref|ZP_10325926.1| D-alanine--D-alanine ligase [Pelosinus fermentans DSM 17108]
gi|421054786|ref|ZP_15517751.1| D-alanine/D-alanine ligase [Pelosinus fermentans B4]
gi|421060404|ref|ZP_15522884.1| D-alanine--D-alanine ligase [Pelosinus fermentans B3]
gi|421064372|ref|ZP_15526254.1| D-alanine--D-alanine ligase [Pelosinus fermentans A12]
gi|421071648|ref|ZP_15532764.1| D-alanine--D-alanine ligase [Pelosinus fermentans A11]
gi|392440467|gb|EIW18147.1| D-alanine/D-alanine ligase [Pelosinus fermentans B4]
gi|392446913|gb|EIW24184.1| D-alanine--D-alanine ligase [Pelosinus fermentans A11]
gi|392455035|gb|EIW31842.1| D-alanine--D-alanine ligase [Pelosinus fermentans DSM 17108]
gi|392457164|gb|EIW33871.1| D-alanine--D-alanine ligase [Pelosinus fermentans B3]
gi|392461229|gb|EIW37448.1| D-alanine--D-alanine ligase [Pelosinus fermentans A12]
Length = 311
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 127/297 (42%), Gaps = 63/297 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L KE VF A+HG GEDG LQ LE G+PYTG GV+AS MDK ++
Sbjct: 52 QLTKEKIEIVFNAIHGQYGEDGVLQGALELLGIPYTGSGVLASAMAMDK---GISKRIFL 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+ T + K DL + D+ E+ + + VK + G S GV + + DL
Sbjct: 109 SASIPTPRSLLFTKADLSR----DLVTEIIAGFSIPVV-VKSSSQGSSIGVVIVEKSADL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ +A+E+ F +D IL
Sbjct: 164 S---QAIEQA------------------------------FQYSDTILVEE--------- 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
KG E+TV ++G + +L P + + K+ GT + P S
Sbjct: 182 -FIKGR----ELTVAILGN-NDLKAL-PVIEIVPFSGRYDYHSKYTKGTTEYIVPAQLSE 234
Query: 657 MSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+T + Q++ L A +AL+ G +R+D ++ DN ++EVNT+PGMT ++++
Sbjct: 235 ETTFLV----QKVALEAFHALRCCGIARVDIMLDDDNNP-YVLEVNTIPGMTGTSLV 286
>gi|325849556|ref|ZP_08170794.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480037|gb|EGC83114.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 348
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 120/303 (39%), Gaps = 81/303 (26%)
Query: 420 KENQATVFI-AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATS--LALNHLA 476
K+ T+ I +HG GEDGT+Q L+A + Y G G+++S CMDKV + N L+
Sbjct: 84 KDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSSVCMDKVTANDIFEKNKLS 143
Query: 477 DLGVL-----TINKDVRRK-EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530
L T N+D +K ++ +K P++ VKP+ +G S GV
Sbjct: 144 QARYLYAKEETFNEDFAKKCQEYIKFPMI----------------VKPSANGSSVGV--- 184
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
++A + E+ E L ++ + +E +
Sbjct: 185 -------------------------NKAENIKELLKFGKEALKYDEKILVEEAIIGQ--- 216
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK-FQGGTGINL 649
E+ + +IG+ M S + T + L + K F T L
Sbjct: 217 ----------------EVEIAIIGENELMASKPGAYTTDHT--FLDYDAKYFDKSTKEEL 258
Query: 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709
P + E L+ K+ A +GF+R+D F+ + + I E+NT PG TP+
Sbjct: 259 PYPIDENLEKELLEFAKK----CYKACGCQGFARVDIFLK--DNKFYINEINTFPGFTPT 312
Query: 710 TVL 712
+
Sbjct: 313 SFF 315
>gi|89095257|ref|ZP_01168178.1| D-alanylalanine synthetase [Neptuniibacter caesariensis]
gi|89080464|gb|EAR59715.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92]
Length = 315
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 20/125 (16%)
Query: 416 IKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLA-LNH 474
++L +EN F+ +HG +GEDGTLQ L+ G PYTG GV AS MDK+ T L L H
Sbjct: 64 VQLQRENFDRAFLILHGPVGEDGTLQGALDMLGKPYTGSGVAASAIGMDKLRTKLIWLGH 123
Query: 475 ---LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 531
V+ +D+ + LK P++ VKPA +G S G++++
Sbjct: 124 NIPTPPFAVIEQGQDLAEVAERLKWPMI----------------VKPAHEGSSIGMSKVS 167
Query: 532 CAEDL 536
++L
Sbjct: 168 SQKEL 172
>gi|398889459|ref|ZP_10643302.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM55]
gi|398189581|gb|EJM76855.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM55]
Length = 318
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDLLQR--------LQSEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVSSASELIDAWKA 177
>gi|359437059|ref|ZP_09227133.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20311]
gi|358028238|dbj|GAA63382.1| D-alanine-D-alanine ligase [Pseudoalteromonas sp. BSi20311]
Length = 306
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 121/306 (39%), Gaps = 87/306 (28%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L N VFIA+HG GEDGT+Q LE +PYTG V+ S MDK+ HL
Sbjct: 55 ELKSLNVDRVFIALHGRGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRC----KHLF 110
Query: 477 DLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534
L+ V K+ I+D + K + VKP+ +G S G+A+ AE
Sbjct: 111 KSAGLSTAPYAVVDAKKGFDAKAIID---------EFKKVMVKPSHEGSSIGMAQASSAE 161
Query: 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594
+ LE+ L T+ F SQ +
Sbjct: 162 E-------LEDAL--------------------------------TNAFKFDSQVLVE-- 180
Query: 595 DRLMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG----- 646
+W+ E T+ V+G + P + + + K+Q +
Sbjct: 181 ---------QWITGREFTITVLGD-----EVQPVIEMSTPNGFYDYQAKYQSNSTQYHCP 226
Query: 647 INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706
+L+P + ALD +L+ + G+ R+DA + + G ++EVNTVPGM
Sbjct: 227 ADLSPSDTQKLQAMALDA----FDLVGAS----GWGRVDAMQD-EQGHFYLLEVNTVPGM 277
Query: 707 TPSTVL 712
T +++
Sbjct: 278 TEKSLV 283
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 39/202 (19%)
Query: 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
KV+VKP+ GSSIG+ A + L+ A + D +V+VE ++ G EFT VL
Sbjct: 140 KVMVKPSHEGSSIGMAQASSA-EELEDALTNAFK-FDSQVLVEQWIT-GREFTITVL--- 193
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G + PV+ + T + ++Y+ KY + YH P +
Sbjct: 194 -GDEVQPVIEMST--------------PNGFYDYQAKY-QSNSTQYHCPADLSPSDTQKL 237
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ A F +G + R+D E G ++N + GM +
Sbjct: 238 QAMALDAFDLVGASGWGRVDAM-----------------QDEQGHFYLLEVNTVPGMTEK 280
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A G S ++ I+
Sbjct: 281 SLVPMAAKANGASFEQLVVRIL 302
>gi|253997366|ref|YP_003049430.1| D-alanine--D-alanine ligase [Methylotenera mobilis JLW8]
gi|253984045|gb|ACT48903.1| D-alanine/D-alanine ligase [Methylotenera mobilis JLW8]
Length = 301
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 115/296 (38%), Gaps = 76/296 (25%)
Query: 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA---- 476
E+ T I++HG GEDG +Q LE G+PYTG GVMAS MDK T + +
Sbjct: 53 ESFDTAMISLHGRFGEDGAMQGALELLGIPYTGSGVMASAIGMDKWRTKMMWSAAGVSTP 112
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+++ + D E L P L VKPA +G S G++++
Sbjct: 113 AFELVSADSDFEAIEQRLGLP----------------LFVKPANEGSSIGISKV----KQ 152
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
T +KA E + P ++I E FV
Sbjct: 153 TGGLKAAYELAAKSDP------------------LVIAEQFVGGG--------------- 179
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E TVG++G +P V + + E K+ P
Sbjct: 180 ----------EYTVGILGD-----QALPIVRIVPKNEFYDFEAKYLRDDTEYRCP---CG 221
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+S E + +Q L N + +G+ R+D F+ + G+ +EVNT PGMT +++
Sbjct: 222 LSAEKEAQIQQEALLAFNTIGCQGWGRVD-FLMDEAGKHYFLEVNTSPGMTDHSLV 276
>gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227]
gi|416291232|ref|ZP_11649852.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
gi|417680540|ref|ZP_12329925.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74]
gi|420323985|ref|ZP_14825771.1| D-alanine--D-alanine ligase A [Shigella flexneri CCH060]
gi|420351149|ref|ZP_14852348.1| D-alanine--D-alanine ligase A [Shigella boydii 4444-74]
gi|421681079|ref|ZP_16120909.1| D-alanine-D-alanine ligase A [Shigella flexneri 1485-80]
gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227]
gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74]
gi|391256875|gb|EIQ15997.1| D-alanine--D-alanine ligase A [Shigella flexneri CCH060]
gi|391289004|gb|EIQ47500.1| D-alanine--D-alanine ligase A [Shigella boydii 4444-74]
gi|404341827|gb|EJZ68229.1| D-alanine-D-alanine ligase A [Shigella flexneri 1485-80]
Length = 364
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + E+ SKL+ L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLRLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
>gi|410633927|ref|ZP_11344567.1| D-alanine-D-alanine ligase [Glaciecola arctica BSs20135]
gi|410146587|dbj|GAC21434.1| D-alanine-D-alanine ligase [Glaciecola arctica BSs20135]
Length = 299
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 120/310 (38%), Gaps = 66/310 (21%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + I+L E V I +HG GEDG+LQ L+ +PY+G GV+ S CM
Sbjct: 29 DAHPFDPAEQPLIQLLDEKFERVVIMLHGRGGEDGSLQGALQQLNLPYSGSGVLGSALCM 88
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 523
DK+ + L LG+ T N + K I +L ++ + VKPA++G
Sbjct: 89 DKIRSKLVWQS---LGLPTANYKIADKSSYDAGSCGAIMADLGNE-----VMVKPAQEGS 140
Query: 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583
S G+A+ A L +
Sbjct: 141 SIGMAKASSALQLETAI------------------------------------------- 157
Query: 584 LFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
Q K D+++ + E TV ++ GK +PS+++ K+Q
Sbjct: 158 ----QDAFKYDDKVLIEQFVHGSEYTVSILNGKA------LPSISMTTPRVFYDYAAKYQ 207
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT 702
+ + P S + E K + +AL G+ R+D F+ G ++E NT
Sbjct: 208 ADSTVYSCP---SGLPDELEIKLGELALEAFDALAGSGWGRVD-FMQDKLGRFYLLEANT 263
Query: 703 VPGMTPSTVL 712
VPGMT +++
Sbjct: 264 VPGMTEKSLV 273
>gi|398930640|ref|ZP_10664705.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM48]
gi|398164950|gb|EJM53074.1| D-alanine--D-alanine ligase [Pseudomonas sp. GM48]
Length = 327
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 28/148 (18%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G D+ D+L R L E FI +HG GEDG++Q LLE G+PYTG G++A
Sbjct: 54 GLDVGDDLLQR--------LQSEKIDRAFIILHGRGGEDGSMQGLLECLGIPYTGSGILA 105
Query: 459 SKTCMDKVATSLALNHLA----DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514
S MDK+ T + L VL+ D L P++
Sbjct: 106 SALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCISAATELGFPLI--------------- 150
Query: 515 CVKPARDGCSTGVARLCCAEDLTVYVKA 542
VKPA +G S G+A++ A +L KA
Sbjct: 151 -VKPAHEGSSIGMAKVSSASELIDAWKA 177
>gi|385802151|ref|YP_005838554.1| D-alanine--D-alanine ligase [Gardnerella vaginalis HMP9231]
gi|333393155|gb|AEF31073.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
HMP9231]
Length = 381
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 119/294 (40%), Gaps = 57/294 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-------ATSLALNHLAD 477
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK A + +
Sbjct: 106 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIA 165
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L V D D I++ E +KL+ L VKP+R G S GV ++ +
Sbjct: 166 LDVRKFANDCANHFDAYANEILEQVEE--AKLEY-PLFVKPSRAGSSFGVTKVESRD--- 219
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD-R 596
KAL + + + + ++ E ++ EI + + + +
Sbjct: 220 --AKALADAVFEASKHDWR---------------VLIEQGIDAREIECAVLAARDGEEPK 262
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPA 654
W G V+ K +++G+ + K+ ++ P
Sbjct: 263 ASWPGEV--------VLDK-------------RQAGEDQFYDFDSKYMDSAASHVEVP-- 299
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E L + + A G SR+D+FV + G V+I E+NT+PG TP
Sbjct: 300 ANLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTP 352
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 48/211 (22%)
Query: 42 VKPTRAGSSIGVT---------VAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFT 91
VKP+RAGSS GVT +A V ++ K +++E GID R E
Sbjct: 201 VKPSRAGSSFGVTKVESRDAKALADAVFEASKHDWRVLIEQGIDAR-----------EIE 249
Query: 92 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPR 149
VL G + P P EV L D R+ +D +++ KY+ + P
Sbjct: 250 CAVLAARDGEE--PKASWPGEVVL------DKRQAGEDQFYDFDSKYMDSAASHVEVPAN 301
Query: 150 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 209
P + +R A F+ +R+D + P G ++ +I
Sbjct: 302 LPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-----------------GHVMINEI 344
Query: 210 NLISGMEQTSFLFQQASKVGFSHSNILRTII 240
N + G S + G S+S+++ +I
Sbjct: 345 NTMPGFTPISMYPKAWEATGISYSDLITKLI 375
>gi|213964603|ref|ZP_03392803.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
gi|213952796|gb|EEB64178.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
Length = 367
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 120/311 (38%), Gaps = 87/311 (27%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
+F +HG GEDGT+Q L E G+ Y GPGV+AS MDK T +L L I K
Sbjct: 113 IFPVLHGPHGEDGTIQGLFELSGIAYVGPGVLASAAGMDKERT----KNLLQAAGLPIGK 168
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLC----VKPARDGCSTGVARLCCAEDLTVYVK 541
V ++ + L+ + +TL VKPAR G S G++R+ +L V+
Sbjct: 169 QV----------VLHVGESLSDE-DKETLGLPVFVKPARGGSSIGISRVDDWANLDAAVE 217
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+R H +++ +
Sbjct: 218 -------------LAREHDW----------------------------------KVIVEA 230
Query: 602 NSRWVEITVGVIGKC-GSMHSLMPSV---TVKESGDILSLEEKFQGGTGINLTPPPASIM 657
E+ +GV+ + GS+ +PS+ T E K+ P
Sbjct: 231 GVDGAEVEIGVLQRADGSLQVSVPSLLRGTEDSDEGFYGFETKYLDDVVSAQIPAELPKD 290
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQAL 717
+ALD +R AL +G +R+D FV DNG + I EVNT+PG TP +
Sbjct: 291 VLKALDTDARR---AFRALGSDGLTRVDFFVT-DNGPI-INEVNTMPGFTPIS------- 338
Query: 718 SEQPPMYPHQF 728
MYP F
Sbjct: 339 -----MYPQMF 344
>gi|417556528|ref|ZP_12207586.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
315-A]
gi|333602602|gb|EGL14029.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
315-A]
Length = 381
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 119/294 (40%), Gaps = 57/294 (19%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-------ATSLALNHLAD 477
VF +HG GEDGTLQ LLE VPY G GV+AS CMDK A + +
Sbjct: 106 AVFPVLHGPNGEDGTLQGLLEMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIA 165
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
L V D D I++ E +KL+ L VKP+R G S GV ++ +
Sbjct: 166 LDVRKFANDCANHFDAYANEILEQVEE--AKLEY-PLFVKPSRAGSSFGVTKVESRD--- 219
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD-R 596
KAL + + + + ++ E ++ EI + + + +
Sbjct: 220 --AKALADAVFEASKHDWR---------------VLIEQGIDAREIECAVLAARDGEEPK 262
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD--ILSLEEKFQGGTGINLTPPPA 654
W G V+ K +++G+ + K+ ++ P
Sbjct: 263 ASWPGEV--------VLDK-------------RQAGEDQFYDFDSKYMDSAASHVEVP-- 299
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708
+ + E L + + A G SR+D+FV + G V+I E+NT+PG TP
Sbjct: 300 ANLPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTP 352
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 48/211 (22%)
Query: 42 VKPTRAGSSIGVT---------VAYGVIDSLKKAKGIILE-GIDDRVVVELFLEGGSEFT 91
VKP+RAGSS GVT +A V ++ K +++E GID R E
Sbjct: 201 VKPSRAGSSFGVTKVESRDAKALADAVFEASKHDWRVLIEQGIDAR-----------EIE 249
Query: 92 AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVRE--KDAIFNYRRKYLPTQQVAYHTPPR 149
VL G + P P EV L D R+ +D +++ KY+ + P
Sbjct: 250 CAVLAARDGEE--PKASWPGEVVL------DKRQAGEDQFYDFDSKYMDSAASHVEVPAN 301
Query: 150 FPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDI 209
P + +R A F+ +R+D + P G ++ +I
Sbjct: 302 LPEETLQRVRNTALAAFKAADGRGLSRVDSFVTPE-----------------GHVMINEI 344
Query: 210 NLISGMEQTSFLFQQASKVGFSHSNILRTII 240
N + G S + G S+ +++ +I
Sbjct: 345 NTMPGFTPISMYPKAWEATGISYGDLITKLI 375
>gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
Length = 323
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 117/286 (40%), Gaps = 73/286 (25%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
FIA+HG GEDGT+Q LE +PYTG GVMAS MDK+ T K
Sbjct: 70 FIALHGRYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMT----------------KR 113
Query: 487 VRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ R E L TP +VD + LQ + VKPARDG S G+ ++ A
Sbjct: 114 IWRFEG-LPTPDWRMVDSAEATRAALQALGAPMIVKPARDGSSIGLTKVMDA-------- 164
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
+EC +RA+ E+ ++ E F+ D
Sbjct: 165 --DEC---------ARAY---ELAAQYDAEVLCEQFIAGD-------------------- 190
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E T V+G G+ + +P + + + K+ T P+ + + E
Sbjct: 191 -----ETTCPVLGT-GAKAAALPVIRIVAPEGNYDYQNKYF--TDTTQYHCPSGLPAAEE 242
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ ++ +E L G++R D + + + ++E+NT PGMT
Sbjct: 243 AE-IQRIVEKAFRTLGCRGWARADIMIRASDRKPFLLEINTSPGMT 287
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 36/202 (17%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-IDDRVVVELFLEGGSEFTAIVLDVG 98
++VKP R GSSIG+T V+D+ + A+ L D V+ E F+ G E T VL G
Sbjct: 145 MIVKPARDGSSIGLTK---VMDADECARAYELAAQYDAEVLCEQFI-AGDETTCPVLGTG 200
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ PV + + + ++Y+ KY T YH P P I
Sbjct: 201 AKAAALPV--------------IRIVAPEGNYDYQNKYF-TDTTQYHCPSGLPAAEEAEI 245
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ F+ LG +AR D S F +IN GM
Sbjct: 246 QRIVEKAFRTLGCRGWARADIMIRASDRKPF----------------LLEINTSPGMTGH 289
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S + A G S+ N+ I+
Sbjct: 290 SLVPMAARASGVSYENLCLGIL 311
>gi|154267923|gb|ABS72058.1| D-alanine:D-lactate ligase [Ruminococcus gauvreauii]
Length = 343
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 123/283 (43%), Gaps = 62/283 (21%)
Query: 425 TVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTIN 484
V +HG GEDG++Q LLE G+PY G + +S TCMDK +LA + + G+
Sbjct: 93 VVLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQSSVTCMDK---ALAYTVVKNAGIAVPG 149
Query: 485 KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE 544
+ ++ D L+T D + + VKPAR G S GV ++C AE+L A+E
Sbjct: 150 FRILQEGDRLETE--DFVY---------PVFVKPARSGSSFGVNKVCKAEELQA---AIE 195
Query: 545 ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSR 604
E +R + +ILI E ++ + N + LM G
Sbjct: 196 E----------ARKY--------DSKILIEEAVTGSE----VGCAILGNGNDLM-AGEVD 232
Query: 605 WVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDK 664
+E+ G +H E + + G+ + PA+ + E ++
Sbjct: 233 QIELRHGFF----KIHQ----------------EAQPEKGSENAVIRVPAA-LPDEVRER 271
Query: 665 CKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
++ I L G +RID F+ D G +++ EVNT+PG T
Sbjct: 272 IQKTAMKIYRILGCRGLARIDLFLRED-GCIVLNEVNTMPGFT 313
>gi|432735908|ref|ZP_19970684.1| D-alanine-D-alanine ligase A [Escherichia coli KTE42]
gi|431286796|gb|ELF77616.1| D-alanine-D-alanine ligase A [Escherichia coli KTE42]
Length = 364
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 126/318 (39%), Gaps = 68/318 (21%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQGI---------KGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPP 722
DK + L G +R+D F+ +N EV+I E+NT+PG T + ++ L +
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT--NISMYPKLWQASG 336
Query: 723 MYPHQFFRKVLDLGSERF 740
+ ++++L ER+
Sbjct: 337 LGYTDLITRLIELALERY 354
>gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
FRIK966]
gi|419090323|ref|ZP_13635643.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4C]
gi|419096349|ref|ZP_13641593.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4D]
gi|420273436|ref|ZP_14775769.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA40]
gi|421822061|ref|ZP_16257500.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK920]
gi|424088175|ref|ZP_17824451.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1996]
gi|424100800|ref|ZP_17835980.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1990]
gi|424466315|ref|ZP_17916524.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA41]
gi|424491007|ref|ZP_17939429.1| D-alanine--D-alanine ligase 1 [Escherichia coli TW09195]
gi|425177967|ref|ZP_18576036.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1999]
gi|425190864|ref|ZP_18588005.1| D-alanine--D-alanine ligase 1 [Escherichia coli NE1487]
gi|425203859|ref|ZP_18600003.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK2001]
gi|425240770|ref|ZP_18634420.1| D-alanine--D-alanine ligase 1 [Escherichia coli MA6]
gi|428944850|ref|ZP_19017509.1| D-alanine--D-alanine ligase A [Escherichia coli 88.1467]
gi|428969397|ref|ZP_19040039.1| D-alanine--D-alanine ligase A [Escherichia coli 90.0039]
gi|428999720|ref|ZP_19068238.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0183]
gi|429030513|ref|ZP_19096399.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0939]
gi|429064927|ref|ZP_19128797.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0672]
gi|444978616|ref|ZP_21295614.1| D-alanine--D-alanine ligase A [Escherichia coli ATCC 700728]
gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
gi|377950514|gb|EHV14141.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4C]
gi|377951249|gb|EHV14868.1| D-alanine-D-alanine ligase A [Escherichia coli DEC4D]
gi|390650948|gb|EIN29315.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1996]
gi|390673210|gb|EIN49458.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1990]
gi|390762354|gb|EIO31612.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA40]
gi|390776339|gb|EIO44285.1| D-alanine--D-alanine ligase 1 [Escherichia coli PA41]
gi|390842819|gb|EIP06654.1| D-alanine--D-alanine ligase 1 [Escherichia coli TW09195]
gi|408076414|gb|EKH10640.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK920]
gi|408110161|gb|EKH41988.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK1999]
gi|408122313|gb|EKH53175.1| D-alanine--D-alanine ligase 1 [Escherichia coli NE1487]
gi|408132437|gb|EKH62413.1| D-alanine--D-alanine ligase 1 [Escherichia coli FRIK2001]
gi|408172599|gb|EKH99662.1| D-alanine--D-alanine ligase 1 [Escherichia coli MA6]
gi|427217698|gb|EKV86750.1| D-alanine--D-alanine ligase A [Escherichia coli 88.1467]
gi|427234298|gb|EKW01997.1| D-alanine--D-alanine ligase A [Escherichia coli 90.0039]
gi|427270993|gb|EKW35842.1| D-alanine--D-alanine ligase A [Escherichia coli 95.0183]
gi|427293827|gb|EKW57047.1| D-alanine--D-alanine ligase A [Escherichia coli 96.0939]
gi|427336936|gb|EKW97884.1| D-alanine--D-alanine ligase A [Escherichia coli 99.0672]
gi|444599935|gb|ELV74791.1| D-alanine--D-alanine ligase A [Escherichia coli ATCC 700728]
Length = 364
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 113/285 (39%), Gaps = 66/285 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
+F VHG +GEDG+LQ +L +P+ G V+AS CMDK T L A L + +T
Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRD-AGLNIAPFIT 160
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + R + E+ SKL L VKPA G S GV+++ E + V
Sbjct: 161 LTRANRHNIS---------FAEVESKLGLP-LFVKPANQGSSVGVSKVTSEEQYAIAVD- 209
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L F E D + Q +KG
Sbjct: 210 -----------------------------LAF----EFDHKVIVEQG---------FKGR 227
Query: 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
EI V+G S + + + D + + K+ G + P A ++ E
Sbjct: 228 ----EIECAVLGNDNPQASTCGEIVL--TSDFYAYDTKYIDEDGAKVVVPAA--IAPEIN 279
Query: 663 DKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
DK + L G +R+D F+ +N EV+I E+NT+PG T
Sbjct: 280 DKIRAIAVQAYQTLGCAGMARVDVFLTPEN-EVVINEINTLPGFT 323
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,793,625,209
Number of Sequences: 23463169
Number of extensions: 499492998
Number of successful extensions: 1202720
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4321
Number of HSP's successfully gapped in prelim test: 672
Number of HSP's that attempted gapping in prelim test: 1181949
Number of HSP's gapped (non-prelim): 18754
length of query: 741
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 591
effective length of database: 8,839,720,017
effective search space: 5224274530047
effective search space used: 5224274530047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)