BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004630
(741 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3EDF4|DDL_CHLL2 D-alanine--D-alanine ligase OS=Chlorobium limicola (strain DSM 245
/ NBRC 103803) GN=ddl PE=3 SV=1
Length = 363
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 117/282 (41%), Gaps = 57/282 (20%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDG +Q LL+ G+PYTG GV AS MDK T L AD GV T
Sbjct: 103 VFIALHGSYGEDGRVQGLLDTMGIPYTGCGVSASAIAMDKALTKLC---AADAGVATAPS 159
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
+ L P + HEL L VKPA G S G+++
Sbjct: 160 ITLDADSYLADP--EPVHELVDSTFGYPLFVKPASLGSSVGISK---------------- 201
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
+ +P PE L + +IL + + K
Sbjct: 202 ----------------VHLPAALPEALKVACSYDR-KILVEAAVSGK------------- 231
Query: 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665
EI V V+G + S+ P V+ D ++K+ T P + + + LD
Sbjct: 232 -EIEVAVLGNDRPVASV-PG-EVEPGSDFYDFQDKYIHNTAKTFIP---ARLPDKLLDSV 285
Query: 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
+ + AL G SR+D FVN +NG +++ E+NT+PG T
Sbjct: 286 RCSAITVYKALGCRGMSRVDFFVNEENGSIVLNEINTIPGFT 327
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 41/205 (20%)
Query: 42 VKPTRAGSSIGVTVAY---GVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP GSS+G++ + + ++LK A D +++VE + G E VL
Sbjct: 188 VKPASLGSSVGISKVHLPAALPEALKVACSY-----DRKILVEAAVSG-KEIEVAVL--- 238
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
G D PV +P EVE GS ++++ KY+ + P R P +++S+
Sbjct: 239 -GND-RPVASVPGEVE---PGS-------DFYDFQDKYIHNTAKTF-IPARLPDKLLDSV 285
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R A +++ LG +R+D +F+ + E G+I+ +IN I G
Sbjct: 286 RCSAITVYKALGCRGMSRVD-FFV---------------NEENGSIVLNEINTIPGFTDI 329
Query: 219 SFLFQQASKVGFSHSNILRTIIGHA 243
S + G + ++ ++ +A
Sbjct: 330 SMYPKLFEASGIPFTALIDKLLHYA 354
>sp|A4G8T6|DDL_HERAR D-alanine--D-alanine ligase OS=Herminiimonas arsenicoxydans GN=ddl
PE=3 SV=1
Length = 334
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 127/308 (41%), Gaps = 66/308 (21%)
Query: 407 PMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV 466
P S+ E LA E VFIA+HG GEDGTLQ LE G+PYTGPGVMAS MDKV
Sbjct: 52 PAERSLAE---LAAEKFDRVFIALHGSYGEDGTLQGALEQLGIPYTGPGVMASAISMDKV 108
Query: 467 ATS-LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 525
T + L+H GV T V E + + E L +K +G +
Sbjct: 109 MTKRVCLSH----GVPTPRFTVLDAETTSAAQLQSVAAEFGLPLM-----LKAPHEGSTI 159
Query: 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585
G+A++ AE + ++ +++ E FV
Sbjct: 160 GIAKVETAEGM----------------------QAGFDLCAKYEAVVLVEQFV------- 190
Query: 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645
KG E+TV VIG G +P V ++ E K+
Sbjct: 191 --------------KGR----ELTVPVIGS-GRNARALPIVEIRAPQGNYDYEHKYFSND 231
Query: 646 GINLTPPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704
L P P EA K Q + + A NA+ G+SR+D V + E ++E+NT P
Sbjct: 232 TEYLCPAPFD----EAFTKRVQALAVSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSP 287
Query: 705 GMTPSTVL 712
GMT +++
Sbjct: 288 GMTSHSLV 295
Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 270 TEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSG 329
T N + +V V+FGG ++ER+VSLMSG V LQ S G
Sbjct: 3 TTVQNLKAEFGKVGVLFGGRSAEREVSLMSGKGVLAALQ------------------SKG 44
Query: 330 MDANITDPDSSS 341
+DA+ DP S
Sbjct: 45 VDAHAFDPAERS 56
>sp|Q748D8|DDL_GEOSL D-alanine--D-alanine ligase OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=ddl PE=3 SV=1
Length = 316
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 80/321 (24%)
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ +LP + + EWI +A FI +HG GEDGT+Q LLE G+PYTG GV+AS
Sbjct: 47 DVGRDLP-QVLVREWIDVA-------FICLHGRYGEDGTVQGLLELMGIPYTGSGVLASA 98
Query: 461 TCMDKVATSLALNHLADLGVLTIN--KDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518
M+K+ +A A G LTI + VRR E + P+ + + + VKP
Sbjct: 99 LAMNKI---VAKEVFAARG-LTIAPYRVVRRGETV--DPVAEGFG--------YPVVVKP 144
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
+++G S GV+ + E+L P++ A F
Sbjct: 145 SQEGSSVGVSIVKSPEEL---------------PSALELA------------------FR 171
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
D+IL +R + KG EI +G++ M ++ + + E
Sbjct: 172 YDDDILV---------ERFI-KGR----EIQIGILD-----DRAMGAIEIVPVNEFYDFE 212
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K+ G ++ PP ++ E + E AL G+SR+D F+ + GE ++
Sbjct: 213 AKYTAGKAEHICPP---VLPAELHRRLLAEGEAAHRALGCSGYSRVD-FLVTEGGECYLL 268
Query: 699 EVNTVPGMTPSTVLIHQALSE 719
EVNT+PGMT ++L AL E
Sbjct: 269 EVNTLPGMTALSLLPEIALKE 289
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 44/195 (22%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VVVKP++ GSS+GV++ + L A + DD ++VE F++ G E +LD
Sbjct: 140 VVVKPSQEGSSVGVSIVKSP-EELPSALELAFR-YDDDILVERFIK-GREIQIGILDD-- 194
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVINSI 158
+ G++++ + +++ KY T A H PP P + +
Sbjct: 195 ----------------RAMGAIEIVPVNEFYDFEAKY--TAGKAEHICPPVLPAELHRRL 236
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
+ LG ++R+D FL TE G ++N + GM
Sbjct: 237 LAEGEAAHRALGCSGYSRVD--FL---------------VTEGGECYLLEVNTLPGMTAL 279
Query: 219 SFLFQQA---SKVGF 230
S L + A S +GF
Sbjct: 280 SLLPEIALKESGIGF 294
>sp|Q3ACF5|DDL_CARHZ D-alanine--D-alanine ligase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=ddl PE=3 SV=1
Length = 312
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 67/342 (19%)
Query: 399 GFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458
G+++ ++ M +I E +K KEN FIA+HG GEDG +Q LLE +PYTG G++A
Sbjct: 32 GYNVV-KIDMDRNIAETLK--KENIDFAFIALHGKYGEDGAIQGLLEIMDIPYTGSGILA 88
Query: 459 SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD-IWHELTSKLQCKTLCVK 517
S +DK+ T L G+ T N ++ P + I E+ L+ + +K
Sbjct: 89 SSLAIDKIMTKKILKA---EGIPTPNYIAFSFDE---NPNFEAISSEILQTLKL-PVVIK 141
Query: 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577
R+G + G+ + ++L +K + E + L+ E F
Sbjct: 142 APREGSTIGIEFVFSKQELPKAIKKVLEI----------------------DKQLLVEEF 179
Query: 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL 637
+E VE+T V+G + ++P + +
Sbjct: 180 IE-------------------------GVEVTASVLGNSNPV--VLPLIEIVSKTRFYDY 212
Query: 638 EEKFQGGTGINLTPPP-ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ G ++ PP A +S +A++ ++ + AL GF+R+D ++V E
Sbjct: 213 EAKYTPGLSEHIIPPRIAPELSQKAIEYARKTYK----ALGCRGFARVDFMIDVRKNEAY 268
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738
++EVNT+PGMT +T L A Q + K+L LG E
Sbjct: 269 VLEVNTIPGMT-ATSLFPDAAKAQGISF-EDLVEKILMLGLE 308
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 35/201 (17%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
VV+K R GS+IG+ + L KA +LE ID +++VE F+E G E TA VL
Sbjct: 138 VVIKAPREGSTIGIEFVFSK-QELPKAIKKVLE-IDKQLLVEEFIE-GVEVTASVLG--- 191
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
+ +PVV LP +++ K ++Y KY P + PPR +
Sbjct: 192 --NSNPVV-LPL---------IEIVSKTRFYDYEAKYTPGLS-EHIIPPRIAPELSQKAI 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
E A ++ LG FAR+D + ++N I GM TS
Sbjct: 239 EYARKTYKALGCRGFARVDFMIDVRKNEAY----------------VLEVNTIPGMTATS 282
Query: 220 FLFQQASKVGFSHSNILRTII 240
A G S +++ I+
Sbjct: 283 LFPDAAKAQGISFEDLVEKIL 303
>sp|Q97F58|DDL_CLOAB D-alanine--D-alanine ligase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=ddl PE=3 SV=1
Length = 343
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 135/332 (40%), Gaps = 81/332 (24%)
Query: 392 KKHSWFTGFDIADELPMRHSINEWIK------------LAKENQATVFIAVHGGIGEDGT 439
KK WF AD++ EW K L + VF +HG GEDGT
Sbjct: 44 KKGEWFEYTGSADKIEN----GEWEKDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGT 99
Query: 440 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVLTINKDVRRKEDLLK 495
+Q L + GVP GP V++S CMDKV T L H AD V+ ++ KE+++K
Sbjct: 100 IQGLCKLVGVPCVGPSVLSSSVCMDKVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIK 159
Query: 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSF 555
E+ +KL + +KP+ G S G+
Sbjct: 160 --------EIENKLGY-AVFIKPSNSGSSVGI---------------------------- 182
Query: 556 SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK 615
++AH E+ E + ++ + +E L N+R EI V V+G
Sbjct: 183 TKAHNRKELEAGLEEAMKYDRKILVEEAL-----------------NAR--EIEVAVLGN 223
Query: 616 CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA 675
+ +P V + + E K++ L P + +S E L+K K + A
Sbjct: 224 -EEPKAAIPGEIVP-AKEFYDYEAKYENAASKLLIP---ANLSNENLEKIKNIAIEVYKA 278
Query: 676 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
L G SR+D V+ D E+ + EVNT+PG T
Sbjct: 279 LDCSGMSRVDFLVDKDTTEMYLNEVNTIPGFT 310
>sp|B5EBQ4|DDL_GEOBB D-alanine--D-alanine ligase OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=ddl PE=3 SV=1
Length = 305
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 89/327 (27%)
Query: 391 LKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVP 450
+K+ G D+ +LP R LA+E FIA+HG GEDG++Q LLE G+P
Sbjct: 37 VKQGFRAVGIDVGRDLPQR--------LAEEQVELAFIALHGRFGEDGSVQGLLELMGIP 88
Query: 451 YTGPGVMASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSK 508
YTG GV+AS +DK+A+ + A G+ L + +RR E+L L P+
Sbjct: 89 YTGSGVLASALAIDKIASKVI---FASAGLKLAPYQVLRRGEELKLANPL---------- 135
Query: 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPP 568
+ VKP+R+G S GV ++R P SR ++
Sbjct: 136 ----PVVVKPSREGSSVGVG------------------IVRDP----SRMQAALD----- 164
Query: 569 PEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVT 627
E F EIL +G E+ VG++ GK ++P
Sbjct: 165 ------EAFRYDSEILI--------------EGFIDGREVQVGILNGKALGAIEIIP--- 201
Query: 628 VKESGDILSLEEKFQGGTGINLTPP--PASIMSTEALDKCKQRIELIANALQLEGFSRID 685
G+ E K+ G ++ P P ++ + + ++ E AL + +SR+D
Sbjct: 202 ---KGEFYDYEAKYTDGGAQHILPARLPEAVYA-----EVLRQGEKAHAALGCDCYSRVD 253
Query: 686 AFVNVDNGEVLIIEVNTVPGMTPSTVL 712
F+ + G+ ++EVNT+PGMT ++L
Sbjct: 254 -FLVTETGDCFLLEVNTLPGMTDLSLL 279
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
VVVKP+R GSS+GV G++ + + + E D +++E F++ G E +L+
Sbjct: 137 VVVKPSREGSSVGV----GIVRDPSRMQAALDEAFRYDSEILIEGFID-GREVQVGILN- 190
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVIN 156
G G++++ K ++Y KY T A H P R P V
Sbjct: 191 GKAL-----------------GAIEIIPKGEFYDYEAKY--TDGGAQHILPARLPEAVYA 231
Query: 157 SIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+ LG CD ++R+D FL TE G ++N + GM
Sbjct: 232 EVLRQGEKAHAALG-CDCYSRVD--FL---------------VTETGDCFLLEVNTLPGM 273
Query: 216 EQTSFLFQQASKVGFSHSNILRTIIGHA 243
S L + A G + ++ I+ A
Sbjct: 274 TDLSLLPEIAGGAGIAFGELVLRILQAA 301
>sp|C6DZK9|DDL_GEOSM D-alanine--D-alanine ligase OS=Geobacter sp. (strain M21) GN=ddl
PE=3 SV=1
Length = 305
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 138/318 (43%), Gaps = 85/318 (26%)
Query: 398 TGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM 457
G D+ +LP R LA+E FIA+HG GEDG++Q LLE G+PYTG GV+
Sbjct: 44 VGIDVGRDLPQR--------LAEEKAEVAFIALHGRFGEDGSVQGLLELMGIPYTGSGVL 95
Query: 458 ASKTCMDKVATSLALNHLADLGV-LTINKDVRRKEDL-LKTPIVDIWHELTSKLQCKTLC 515
AS +DK+A+ + A G+ L + +RR E+ L P+ +
Sbjct: 96 ASALAIDKIASKVI---FASAGLTLAPYQVLRRGEEFKLANPL--------------PVV 138
Query: 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575
VKP+R+G S GV ++R P SR ++ E
Sbjct: 139 VKPSREGSSVGVG------------------IVRDP----SRMQAALD-----------E 165
Query: 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVI-GKCGSMHSLMPSVTVKESGDI 634
F EIL +G E+ VG++ GK + ++ + G+
Sbjct: 166 AFRYDSEILI--------------EGFIDGREVQVGILDGKA------LGAIEIVPKGEF 205
Query: 635 LSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE 694
E K+ G ++ P + + + ++ E AL + +SR+D F+ + G+
Sbjct: 206 YDYEAKYTDGGAQHILP---ARLPEAVYGEVLRQGEKAHAALGCDCYSRVD-FLVTETGD 261
Query: 695 VLIIEVNTVPGMTPSTVL 712
++EVNT+PGMT ++L
Sbjct: 262 CFLLEVNTLPGMTDLSLL 279
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 47/208 (22%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
VVVKP+R GSS+GV G++ + + + E D +++E F++ G E +LD
Sbjct: 137 VVVKPSREGSSVGV----GIVRDPSRMQAALDEAFRYDSEILIEGFID-GREVQVGILD- 190
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT-PPRFPIVVIN 156
G G++++ K ++Y KY T A H P R P V
Sbjct: 191 GKAL-----------------GAIEIVPKGEFYDYEAKY--TDGGAQHILPARLPEAVYG 231
Query: 157 SIREGASLLFQRLGLCD-FARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215
+ LG CD ++R+D FL TE G ++N + GM
Sbjct: 232 EVLRQGEKAHAALG-CDCYSRVD--FL---------------VTETGDCFLLEVNTLPGM 273
Query: 216 EQTSFLFQQASKVGFSHSNILRTIIGHA 243
S L + A G + ++ I+ A
Sbjct: 274 TDLSLLPEIAGGAGITFGELVLRILQAA 301
>sp|Q8F4I2|DDL_LEPIN D-alanine--D-alanine ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=ddl
PE=3 SV=1
Length = 351
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + VF+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 82/216 (37%), Gaps = 40/216 (18%)
Query: 29 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEG 86
V KL+ +KP GSS+ V Y + + LK+ +I E D +V+ + FL G
Sbjct: 163 VITKLETLGFPQFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLTG 218
Query: 87 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH- 145
E + VL+ + L TE+ F++ KY +Q H
Sbjct: 219 -IEVSCGVLERYRDGKFKKIALPATEI----------VPGGEFFDFESKY---KQGGSHE 264
Query: 146 -TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 204
TP R + ++E A + LG ++R D + H+
Sbjct: 265 ITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL--------------- 309
Query: 205 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+ N + GM +TS + QQA G S + +I
Sbjct: 310 ---ETNTLPGMTETSLIPQQAKAAGISMEEVFSDLI 342
>sp|A4XJ89|DDL_CALS8 D-alanine--D-alanine ligase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=ddl PE=3 SV=1
Length = 364
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 178/471 (37%), Gaps = 136/471 (28%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V+FGG ++E +VS++S +V NL E+ P + I D DS
Sbjct: 5 KVAVLFGGVSTEHEVSIVSAKSVMQNLDK-EKYEIIPIGITKEGKWLL-YTGKIEDLDSK 62
Query: 341 SRVVWSLPYSLVLRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGF 400
W++ YS+ C I PDR LV+ + F
Sbjct: 63 ----WTM-YSI-----------ECF--ISPDRTK----------KALVKIKDSEATFIDI 94
Query: 401 DIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASK 460
D+ VF +HG GEDGT+Q LLE G+PY G GV++S
Sbjct: 95 DV-----------------------VFPVLHGLNGEDGTVQGLLELSGIPYVGCGVLSSA 131
Query: 461 TCMDKV-ATSLALNHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKL 509
CMDK A LAL G L I KD +RR E P+
Sbjct: 132 LCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVF---------- 181
Query: 510 QCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPP 569
VKPA G S G+++ A+D + A+ E L
Sbjct: 182 ------VKPANSGSSVGISK---AKDKDELILAIHEAFLY-------------------- 212
Query: 570 EILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVK 629
D + Q+ N GNS EI V +G+ ++P
Sbjct: 213 -----------DTKILIEQAINAREIECAVLGNS---EILVSALGE------IVP----- 247
Query: 630 ESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVN 689
S + S E K+ G+ + P + + D+ K+ I + G +RID FV+
Sbjct: 248 -SREFYSYEAKYIDGSSELIIPAK---LEKQVEDEIKELAVKIYKLFECSGMARIDFFVD 303
Query: 690 VDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPM-YPHQFFRKVLDLGSER 739
+ +V EVNT+PG T ++ ++ L E + YP Q K++ L E+
Sbjct: 304 KETNKVYFNEVNTIPGFT--SISMYPKLMEYSGIPYP-QLLDKLIQLAIEK 351
>sp|C6DEU1|DDL_PECCP D-alanine--D-alanine ligase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=ddl PE=3 SV=1
Length = 306
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 130/317 (41%), Gaps = 84/317 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E +FIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 50 LKEEGFTKIFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGL 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
+ D R+ ++ ++ + L L VKP+R+G S G++++ +L
Sbjct: 110 PVSPYVALDRRQYSEMAANALLATFTHL-----GLPLIVKPSREGSSVGMSKVNTLSELP 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
ALEE F D+IL
Sbjct: 165 A---ALEEA------------------------------FRHDDDILV------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G ++PS+ ++ +G E K+ P
Sbjct: 180 -----EKWLSGPEYTVAILGD-----EVLPSIRIQPAGTFYDYEAKYLSDDTQYFCPSGL 229
Query: 655 SIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
S D+ +Q + +A A+ G+ R+D ++ D G ++EVNT PGMT +
Sbjct: 230 S-------DEKEQELAGLAMAAYRAVGCSGWGRVDFMLDSD-GAFYLLEVNTSPGMTSHS 281
Query: 711 VLIHQALSEQPPMYPHQ 727
++ PM HQ
Sbjct: 282 LV---------PMAAHQ 289
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
++VKP+R GSS+G++ +++L + + E DD ++VE +L G E+T +L
Sbjct: 141 LIVKPSREGSSVGMS----KVNTLSELPAALEEAFRHDDDILVEKWLS-GPEYTVAIL-- 193
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
G + P S+ ++ ++Y KYL + Y P
Sbjct: 194 --GDEVLP--------------SIRIQPAGTFYDYEAKYL-SDDTQYFCPSGLSDEKEQE 236
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+ A ++ +G + R+D F+ S G ++N GM
Sbjct: 237 LAGLAMAAYRAVGCSGWGRVD--FMLDSD---------------GAFYLLEVNTSPGMTS 279
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A + G + S ++ I+
Sbjct: 280 HSLVPMAAHQRGLTFSQLVVKIL 302
>sp|Q72R93|DDL_LEPIC D-alanine--D-alanine ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=ddl PE=3 SV=1
Length = 351
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 67/343 (19%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
+E R+ ++ ++ + F+ +HGG GEDGT+Q LE G+PYTG GV+AS M
Sbjct: 70 EEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVLASAIAM 129
Query: 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL--CVKPARD 521
DK A+ L + V ++ K ++ + +KL+ +KP
Sbjct: 130 DKTR--------ANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEG 181
Query: 522 GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581
G S V ++ E L E
Sbjct: 182 GSSVSVYKITNREQLK-----------------------------------------EKL 200
Query: 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSL-MPSVTVKESGDILSLE 638
++F S S ++M + +E++ GV+ + G + +P+ + G+ E
Sbjct: 201 ALIFESDS------KVMSQSFLTGIEVSCGVLERYRDGKFKKIALPATEIVPGGEFFDFE 254
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLII 698
K++ G +TP + +S + + + ++ +L G+SR D F+ V NGE I+
Sbjct: 255 SKYKQGGSHEITP---ARISEQEMKRVQELAIAAHRSLGCSGYSRTD-FIIV-NGEPHIL 309
Query: 699 EVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERFL 741
E NT+PGMT ++++ QA + M + F ++++G +R L
Sbjct: 310 ETNTLPGMTETSLIPQQAKAAGISM--EEVFSDLIEIGLKRSL 350
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 82/216 (37%), Gaps = 40/216 (18%)
Query: 29 VTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI--DSLKKAKGIILEGIDDRVVVELFLEG 86
V KL+ +KP GSS+ V Y + + LK+ +I E D +V+ + FL G
Sbjct: 163 VITKLETLGFPQFLKPVEGGSSVSV---YKITNREQLKEKLALIFES-DSKVMSQSFLTG 218
Query: 87 GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH- 145
E + VL+ + L TE+ F++ KY +Q H
Sbjct: 219 -IEVSCGVLERYRDGKFKKIALPATEI----------VPGGEFFDFESKY---KQGGSHE 264
Query: 146 -TPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTI 204
TP R + ++E A + LG ++R D + H+
Sbjct: 265 ITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFIIVNGEPHIL--------------- 309
Query: 205 LFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240
+ N + GM +TS + QQA G S + +I
Sbjct: 310 ---ETNTLPGMTETSLIPQQAKAAGISMEEVFSDLI 342
>sp|B0S093|DDL_FINM2 D-alanine--D-alanine ligase OS=Finegoldia magna (strain ATCC 29328)
GN=ddl PE=3 SV=1
Length = 350
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 124/312 (39%), Gaps = 71/312 (22%)
Query: 405 ELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMD 464
+L + S++E I+ +F A+HG GEDGT+Q ++ +P+ G V+ S CMD
Sbjct: 69 DLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALCMD 128
Query: 465 KVATS--LALNHL--ADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR 520
K T+ LN + A VL N D KE KT K + VKP
Sbjct: 129 KGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKT--------------SKAVYVKPCN 174
Query: 521 DGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580
G S GV R E+L KA++ N+F IL+ E +
Sbjct: 175 AGSSVGVMRAETEEELE---KAIQ--------NAFQYDR----------RILVEEEIIGP 213
Query: 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEK 640
E+ + V+G + S P V + + K
Sbjct: 214 --------------------------ELQIAVMGNDNPVAS-RPGVYQIHDVEFFDYDAK 246
Query: 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEV 700
+ LTP P M + K + E + + L GFSR+D FV + E+ + E+
Sbjct: 247 YNDSKTEMLTPFP---MDEKLELKARHLAEKVYKLMSLSGFSRVDMFVK--DNELWVNEI 301
Query: 701 NTVPGMTPSTVL 712
NTVPG+TP ++
Sbjct: 302 NTVPGLTPHSMF 313
>sp|Q6D0I5|DDL_ERWCT D-alanine--D-alanine ligase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=ddl
PE=3 SV=1
Length = 306
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 130/321 (40%), Gaps = 69/321 (21%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L +E VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ T +
Sbjct: 50 LKEEGFTNVFIALHGRGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGL 109
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
+ D R+ D ++ + L L VKP+R+G S G++++ DL
Sbjct: 110 PVSPYVALDRRQYLDTEANTLLAQFTHL-----GLPLIVKPSREGSSVGMSKVNTLSDLP 164
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
ALEE F D++L
Sbjct: 165 A---ALEEA------------------------------FRHDDDVLV------------ 179
Query: 598 MWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654
+W+ E TV ++G ++PS+ ++ +G E K+ P
Sbjct: 180 -----EKWLSGPEYTVAILGD-----EVLPSIRIQPAGTFYDYEAKYLSDDTQYFCP--- 226
Query: 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIH 714
S +S E A+ G+ R+D ++ D+ ++EVNT PGMT +++
Sbjct: 227 SGLSDEQEQALAALAMAAYRAVDCSGWGRVDFMLDSDDA-FYLLEVNTSPGMTSHSLVPM 285
Query: 715 QALSEQPPMYPHQFFRKVLDL 735
A Q + Q K+L+L
Sbjct: 286 AA--RQRGLTFSQLVVKILEL 304
>sp|B8F3B8|DDL_HAEPS D-alanine--D-alanine ligase OS=Haemophilus parasuis serovar 5
(strain SH0165) GN=ddl PE=3 SV=1
Length = 303
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 124/300 (41%), Gaps = 67/300 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L N
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T +V R+ + + E+ +KL L VKPA +G S GV+++ AE L
Sbjct: 110 -VGLPTAAMEVVRRGQAVNS------DEIIAKLGL-PLFVKPASEGSSVGVSKVKTAEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L + D I+ +
Sbjct: 162 ---LPAIEEAL-------------------------------KYDSIVLVEE-------- 179
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
N E +V V+ ++P+V + G+ K+ + P +
Sbjct: 180 -----NLAGAEYSVPVLD-----GEVLPAVQIIPDGEFYDYHAKYISDNTQYVVPALNAD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E KQ +++ G+SRID + G ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAKLVKQAYDVVG----CRGWSRIDVMED-GEGNFRLVEVNTCPGMTSHSIFPKSA 284
>sp|A6T2F6|DDL_JANMA D-alanine--D-alanine ligase OS=Janthinobacterium sp. (strain
Marseille) GN=ddl PE=3 SV=1
Length = 320
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 122/309 (39%), Gaps = 69/309 (22%)
Query: 404 DELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCM 463
D P + +LA E VFIA+HG GEDG+LQ LE G+PYTGPGVMAS M
Sbjct: 39 DAHPFDPAERSLAELAAEKFDRVFIALHGRFGEDGSLQGALEQLGIPYTGPGVMASAIAM 98
Query: 464 DKVATS-LALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
DKV T + L+H GV T E + I E L +K +G
Sbjct: 99 DKVITKRVCLSH----GVPTPKFTALEVEATTAEQLQAIAAEFGMPLM-----LKAPHEG 149
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
+ G+A++ AE + F+ + D+
Sbjct: 150 STIGIAKVETAEGMQAG----------------------------------FDLCAKYDD 175
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ 642
++ Q KG E+TV V+G G +P V + E K+
Sbjct: 176 VVLVEQ---------FVKGR----ELTVPVLGS-GRNARALPIVEIIAPQGNYDYEHKYF 221
Query: 643 GGTGINLTPPPASIMSTEALDKCKQRIELIA----NALQLEGFSRIDAFVNVDNGEVLII 698
L P P T +R++ +A NA+ G++R+D V + E ++
Sbjct: 222 SDDTQYLCPAPFDAAFT-------KRVQALAVSAFNAVGCTGWARVDFLVRESDNEPFLL 274
Query: 699 EVNTVPGMT 707
E+NT PGMT
Sbjct: 275 EINTSPGMT 283
>sp|B5BLC4|DDL_SALPK D-alanine--D-alanine ligase OS=Salmonella paratyphi A (strain
AKU_12601) GN=ddl PE=3 SV=1
Length = 306
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T ++L+ A + + DD +++E +L G EFT ++
Sbjct: 141 LIVKPSREGSSVGMTKVVEE-NALQGALSLAFQH-DDEILIEKWL-CGPEFTVAIV---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ ++ ++Y KYL + + Y P +++
Sbjct: 194 GEEILP--------------SIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG + RID V S+ G + N GM S
Sbjct: 239 SLVLQAWKALGCTGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|Q5PDC6|DDL_SALPA D-alanine--D-alanine ligase OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=ddl PE=3 SV=1
Length = 306
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T ++L+ A + + DD +++E +L G EFT ++
Sbjct: 141 LIVKPSREGSSVGMTKVVEE-NALQGALSLAFQH-DDEILIEKWL-CGPEFTVAIV---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ ++ ++Y KYL + + Y P +++
Sbjct: 194 GEEILP--------------SIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG + RID V S+ G + N GM S
Sbjct: 239 SLVLQAWKALGCTGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|Q8Z9G7|DDLB_SALTI D-alanine--D-alanine ligase B OS=Salmonella typhi GN=ddlB PE=3 SV=3
Length = 306
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T ++L+ A + + DD +++E +L G EFT ++
Sbjct: 141 LIVKPSREGSSVGMTKVVEE-NALQGALSLAFQH-DDEILIEKWL-CGPEFTVAIV---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ ++ ++Y KYL + + Y P +++
Sbjct: 194 GEEILP--------------SIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEASQEAALQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG + RID V S+ G + N GM S
Sbjct: 239 SLVLQAWKALGCTGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|Q8ZRU1|DDLB_SALTY D-alanine--D-alanine ligase B OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=ddlB PE=3 SV=3
Length = 306
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + + S L L VKP+R+G S G+ K +EE
Sbjct: 117 LTRAE---FEKGLSEEQKARISALGLP-LIVKPSREGSSVGM------------TKVVEE 160
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
L+ + S A F DEIL +W
Sbjct: 161 NALQ---GALSLA------------------FQHDDEILI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P AL
Sbjct: 183 LCGPEFTVAIVGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAAL 237
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
Q + L A AL G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 238 ----QSLVLQAWKALGCTGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T ++L+ A + + DD +++E +L G EFT ++
Sbjct: 141 LIVKPSREGSSVGMTKVVEE-NALQGALSLAFQH-DDEILIEKWL-CGPEFTVAIV---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ ++ ++Y KYL + + Y P +++
Sbjct: 194 GEEILP--------------SIRIQPAGTFYDYEAKYL-SDETQYFCPAGLDASQEAALQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ LG + RID V S+ G + N GM S
Sbjct: 239 SLVLQAWKALGCTGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|A6VQN1|DDL_ACTSZ D-alanine--D-alanine ligase OS=Actinobacillus succinogenes (strain
ATCC 55618 / 130Z) GN=ddl PE=3 SV=1
Length = 307
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 128/303 (42%), Gaps = 72/303 (23%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH--- 474
L ++ VF +HG GEDG +Q +LE G+PYTG GVM S MDK+ T +
Sbjct: 54 LKQQGFERVFNILHGRGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGL 113
Query: 475 -LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA 533
+AD+ ++T N + + + ++L L VKP+R+G S G+ ++ A
Sbjct: 114 PIADMEIVTKNTALSLEP-----------QAIVARLGL-PLMVKPSREGSSVGLTKVDSA 161
Query: 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593
+ L K+ + L+ +I++ E ++ D
Sbjct: 162 DKL----KSAVDLALKF------------------DDIVLIEEWLSGD------------ 187
Query: 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
E+TV V+G ++P+V + G+ K+ + P P
Sbjct: 188 -------------ELTVPVLG-----DEVLPAVQIVPEGEFYDYNAKYISDNTRYICPMP 229
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLI 713
MS E D+ K ++ A+ G+SRID + + G +IEVNT PGMT ++
Sbjct: 230 ---MSDERWDELKNLVKRAYEAVGCRGWSRIDVMTDSE-GNFRLIEVNTTPGMTSHSLFP 285
Query: 714 HQA 716
A
Sbjct: 286 KSA 288
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T D LK A + L+ DD V++E +L G E T VL
Sbjct: 142 LMVKPSREGSSVGLTKVDSA-DKLKSAVDLALK-FDDIVLIEEWLS-GDELTVPVL---- 194
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P V + E E ++Y KY+ + Y P + ++
Sbjct: 195 GDEVLPAVQIVPEGEF--------------YDYNAKYI-SDNTRYICPMPMSDERWDELK 239
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
++ +G ++RID V + SE G ++N GM S
Sbjct: 240 NLVKRAYEAVGCRGWSRID---------VMTDSE--------GNFRLIEVNTTPGMTSHS 282
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A+ VG+S ++ I+
Sbjct: 283 LFPKSAATVGYSFEKLVEKIL 303
>sp|Q3A2G9|DDL_PELCD D-alanine--D-alanine ligase OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=ddl PE=3 SV=1
Length = 305
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 120/296 (40%), Gaps = 71/296 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L K FIA+HG GEDGT+Q LLE +PYTG GV+AS MDKVAT L +
Sbjct: 55 QLEKTGVEVAFIALHGRFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCY-- 112
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
G+ T V R+ ++ L L VKPAR+G + G++ + ++L
Sbjct: 113 -HGIATPGFAVMRR-----------GQKICGTLPDYPLVVKPAREGSTIGISIVHDEQEL 160
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
LEE ++++ E F+
Sbjct: 161 AA---GLEEAFRH-------------------DDLVLVEQFIA----------------- 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
E+TVGV+ +P + V G + K+ G L P P
Sbjct: 182 --------GAEVTVGVLDG-----QPLPIIQVVPKGGFYDYQSKYTPGQTEYLLPAPLPE 228
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
AL R + A+ G +R+D F+ D G +EVNT+PGMT +++L
Sbjct: 229 TLYGALQDSAVR---VFEAIGCCGAARVD-FMVTDTG-FYCLEVNTIPGMTETSLL 279
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 44/209 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
+VVKP R GS+IG+++ + D + A G+ E DD V+VE F+ G+E T VLD
Sbjct: 138 LVVKPAREGSTIGISIVH---DEQELAAGL-EEAFRHDDLVLVEQFI-AGAEVTVGVLD- 191
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
P LP + V K ++Y+ KY P Q Y P P + +
Sbjct: 192 -----GQP---LPI---------IQVVPKGGFYDYQSKYTPGQ-TEYLLPAPLPETLYGA 233
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
+++ A +F+ +G C AR+D F+ + T + ++N I GM +
Sbjct: 234 LQDSAVRVFEAIGCCGAARVD--FMVTDTGFYC----------------LEVNTIPGMTE 275
Query: 218 TSFLFQQASKVGFSHSNILRTIIGHACSR 246
TS L + A+ VG S ++ I+ A R
Sbjct: 276 TSLLPKAANAVGMSFDELVERILAGASLR 304
>sp|A5EY21|DDL_DICNV D-alanine--D-alanine ligase OS=Dichelobacter nodosus (strain
VCS1703A) GN=ddl PE=3 SV=1
Length = 310
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 131/329 (39%), Gaps = 71/329 (21%)
Query: 387 LVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEA 446
L+ G H+ I L N L E+ + F+ +HG GEDG +Q++L+
Sbjct: 25 LIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVMLHGRGGEDGEIQAILQW 84
Query: 447 EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 506
G+PYTG V+A MDKV A L VL D+L TP + L
Sbjct: 85 LGIPYTGSRVLACALAMDKVVCKKVWQS-AGLPVLA---------DVLVTP-ESRFETLV 133
Query: 507 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPN 566
+L C+ +KPA +G S GV+R VK E+ IP +RA
Sbjct: 134 EQLHCQDFVIKPALEGSSVGVSR----------VKNQEQLAAAIPFAGGARAK------- 176
Query: 567 PPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV 626
++ EP++ E+T G++ +++P++
Sbjct: 177 -----IMAEPWIVGR-------------------------ELTYGIVND-----TVLPAI 201
Query: 627 TVKESG--DILSLEEKFQGGTGINLTPPPASIMSTEALD-KCKQRIELIANALQLEGFSR 683
+ D + K+ L P P ALD +C++ A+ G+ R
Sbjct: 202 EIVAGNDHDFYDYDAKYHAANTQYLCPAPID----AALDARCREIAFAAFQAIGARGWGR 257
Query: 684 IDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
+D V+ N L +E+N VPGMT +++
Sbjct: 258 VDMIVDAQNRPYL-LEINLVPGMTTHSLV 285
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 19/67 (28%)
Query: 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSS 340
+V V++GG++SER++SL+ G V L C++G+DA++ D
Sbjct: 9 KVAVLYGGNSSEREISLIGGRAVHAAL------------------CAAGIDAHLLDTGDP 50
Query: 341 SRVVWSL 347
+R +W+L
Sbjct: 51 NR-IWTL 56
>sp|B0BRH9|DDL_ACTPJ D-alanine--D-alanine ligase OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=ddl PE=3 SV=1
Length = 303
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 131/321 (40%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T + V R+ + + + ++ +KL VKP+ +G S GV ++ E L
Sbjct: 110 -VGLPTADMVVVRRGEAVDS------EQIIAKLGLPVF-VKPSSEGSSVGVTKVKTVEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L F I++ E F+
Sbjct: 162 ---LPAVEEAL------KFDS-------------IVLVEAFL------------------ 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
G V + G ++P+V + G+ K+ L P +
Sbjct: 182 ---AGKEYSVPVLDG---------QVLPAVQIIPEGEFYDYHAKYISDNTQYLVPALSDD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E + K E++ G+SRID + NG ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAELVKAAYEVVG----CRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ P + +VL+L +
Sbjct: 285 ATVGIPF--EKLVERVLELSA 303
>sp|B3GZL0|DDL_ACTP7 D-alanine--D-alanine ligase OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=ddl PE=3 SV=1
Length = 303
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 131/321 (40%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T + V R+ + + + ++ +KL VKP+ +G S GV ++ E L
Sbjct: 110 -VGLPTADMVVVRRGEAVDS------EQIIAKLGLPVF-VKPSSEGSSVGVTKVKTVEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L F I++ E F+
Sbjct: 162 ---LPAVEEAL------KFDS-------------IVLVEAFL------------------ 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
G V + G ++P+V + G+ K+ L P +
Sbjct: 182 ---AGKEYSVPVLDG---------QVLPAVQIIPEGEFYDYHAKYISDNTQYLVPALSDD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E + K E++ G+SRID + NG ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAELVKAAYEVVG----CRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ P + +VL+L +
Sbjct: 285 ATVGIPF--EKLVERVLELSA 303
>sp|A3MY92|DDL_ACTP2 D-alanine--D-alanine ligase OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=ddl PE=3 SV=1
Length = 303
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 131/321 (40%), Gaps = 69/321 (21%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
KL ++ VF +HGGIGE+G LQ LE G+PYTG GVMAS +DK T L
Sbjct: 52 KLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQA-- 109
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
+G+ T + V R+ + + + ++ +KL VKP+ +G S GV ++ E L
Sbjct: 110 -VGLPTADMVVVRRGEAVDS------EQIIAKLGLPVF-VKPSSEGSSVGVTKVKTVEQL 161
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
+ A+EE L F I++ E F+
Sbjct: 162 ---LPAVEEAL------KFDS-------------IVLVEAFL------------------ 181
Query: 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656
G V + G ++P+V + G+ K+ L P +
Sbjct: 182 ---AGKEYSVPVLDG---------QVLPAVQIIPEGEFYDYHAKYISDNTQYLVPALSDD 229
Query: 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
E + K E++ G+SRID + NG ++EVNT PGMT ++ A
Sbjct: 230 RQAEVAELVKAAYEVVG----CRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSA 284
Query: 717 LSEQPPMYPHQFFRKVLDLGS 737
+ P + +VL+L +
Sbjct: 285 ATVGIPF--EKLVERVLELSA 303
>sp|B9MLC6|DDL_CALBD D-alanine--D-alanine ligase OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=ddl PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 133/343 (38%), Gaps = 99/343 (28%)
Query: 420 KENQAT------VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKV-ATSLAL 472
K+N+AT VF +HG GEDGT+Q LLE G+PY G GV++S CMDK A LAL
Sbjct: 85 KDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGCGVLSSAICMDKAFAKKLAL 144
Query: 473 NHLADLG-VLTINKD---------VRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG 522
G L + K+ +RR E P+ VKPA G
Sbjct: 145 LEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVF----------------VKPANSG 188
Query: 523 CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDE 582
S G+++ EDL + I E F+ +
Sbjct: 189 SSVGISKAKDREDLV---------------------------------LAIHEAFLYDTK 215
Query: 583 ILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDIL------S 636
IL Q+ N EI V+G V V E G+I+ S
Sbjct: 216 ILI-EQAINAR-------------EIECAVLGN--------DEVFVSEPGEIIPSREFYS 253
Query: 637 LEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696
E K+ + + P TE + RI I + G +R+D FV+ D +V
Sbjct: 254 YEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKI---FECCGMARVDFFVDKDTNKVY 310
Query: 697 IIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739
EVNT+PG T ++ ++ L E + Q K++ L E+
Sbjct: 311 FNEVNTIPGFT--SISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 35/225 (15%)
Query: 22 SELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVE 81
S ++F+ S V VKP +GSS+G++ A D + L D ++++E
Sbjct: 162 SAKKDYFIRRIESEFSYPVFVKPANSGSSVGISKAKDREDLVLAIHEAFL--YDTKILIE 219
Query: 82 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 141
+ E VL F P ++P+ RE ++Y KY+
Sbjct: 220 QAI-NAREIECAVLGNDEVFVSEPGEIIPS------------RE---FYSYEAKYIDNSS 263
Query: 142 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW 201
P R P V I++ A +++ C AR+D +F+ T+
Sbjct: 264 -ELIIPARLPKEVTEEIKDLAGRIYKIFECCGMARVD-FFVDKDTN-------------- 307
Query: 202 GTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
+ F ++N I G S + G +S ++ +I A +
Sbjct: 308 -KVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLAIEK 351
>sp|A9BUK8|DDL_DELAS D-alanine--D-alanine ligase OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=ddl PE=3 SV=1
Length = 326
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 124/298 (41%), Gaps = 77/298 (25%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L KE FIA+HG GEDGT+Q LE G+PYTGPGVMAS MDK+ T
Sbjct: 60 ELKKEGFDRCFIALHGRYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMT-------- 111
Query: 477 DLGVLTINKDVRRKEDLLKTP---IVDIWHELTSKLQC--KTLCVKPARDGCSTGVARLC 531
K + R E L TP +V E + LQ + VKP+R+G + G+ ++
Sbjct: 112 --------KRIWRFEG-LPTPDWRLVASAGETRAALQALGAPMIVKPSREGSTIGLTKVW 162
Query: 532 CAEDL-TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
AE+ YV A SR PE+L E F+E D
Sbjct: 163 TAEECDQAYVLA-------------SRYD---------PEVLC-EEFIEGD--------- 190
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
E T V+G H+L V G+ + F T +
Sbjct: 191 ----------------ETTCPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHC- 233
Query: 651 PPPASIMSTEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
P+ + + E + +RI + A L G+SR D + + + ++E+NT PGMT
Sbjct: 234 --PSGLPAEEEAE--IRRIVVRAFRTLGCRGWSRADIMIRASDRKPFLLEINTSPGMT 287
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 34/204 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GS+IG+T + + +A ++ D V+ E F+E G E T VL G
Sbjct: 145 MIVKPSREGSTIGLTKVW-TAEECDQAY-VLASRYDPEVLCEEFIE-GDETTCPVLGTGE 201
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G PV + + + ++Y+ KY T YH P P IR
Sbjct: 202 GAHALPV--------------IRIVAPEGNYDYQNKYF-TDDTKYHCPSGLPAEEEAEIR 246
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
F+ LG ++R D S F +IN GM S
Sbjct: 247 RIVVRAFRTLGCRGWSRADIMIRASDRKPF----------------LLEINTSPGMTGHS 290
Query: 220 FLFQQASKVGFSHSNILRTIIGHA 243
+ A +G S+ N+ I+ A
Sbjct: 291 LVPMSARAIGVSYENLCLGILASA 314
>sp|Q8FL63|DDLB_ECOL6 D-alanine--D-alanine ligase B OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ddlB PE=3 SV=3
Length = 306
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 136/315 (43%), Gaps = 73/315 (23%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLNDKQLAEISSLGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ +G E K+ P EAL
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPAGTFYDYEAKYLSDETQYFCPA-----GLEAL 232
Query: 663 DKCK-QRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQ 289
Query: 721 PPMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 290 AGMSFSQLVVRILEL 304
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V+VKP+R GSS+G++ ++L+ A + + D+ V++E +L G EFT +L
Sbjct: 141 VIVKPSREGSSVGMSKVVAE-NALQDALRLAFQH-DEEVLIEKWLS-GPEFTVAIL---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ ++ ++Y KYL + + Y P + +++
Sbjct: 194 GEEILP--------------SIRIQPAGTFYDYEAKYL-SDETQYFCPAGLEALQEANLQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ LG + RID V S+ G + N GM S
Sbjct: 239 ALVLKAWTTLGCKGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|Q8X9Y6|DDLB_ECO57 D-alanine--D-alanine ligase B OS=Escherichia coli O157:H7 GN=ddlB
PE=3 SV=3
Length = 306
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 143/317 (45%), Gaps = 77/317 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGV---LT 482
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V +
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 483 INKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKA 542
+ + V ++ L + +I S L + VKP+R+G S G++++ V A
Sbjct: 117 LTR-VEFEKGLSDKQLAEI-----SALGLPVI-VKPSREGSSVGMSKV-------VAENA 162
Query: 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGN 602
L++ LR+ F +E+L
Sbjct: 163 LQDA-LRL-------------------------AFQHDEEVLI----------------- 179
Query: 603 SRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+W+ E TV ++G+ ++PSV ++ SG E K+ PA + ++
Sbjct: 180 EKWLSGPEFTVAILGE-----EILPSVRIQPSGTFYDYEAKYLSDETQYFC--PAGLEAS 232
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
+ + Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A
Sbjct: 233 Q--EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA-- 287
Query: 719 EQPPMYPHQFFRKVLDL 735
Q M Q ++L+L
Sbjct: 288 RQAGMSFSQLVVRILEL 304
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V+VKP+R GSS+G++ ++L+ A + + D+ V++E +L G EFT +L
Sbjct: 141 VIVKPSREGSSVGMSKVVAE-NALQDALRLAFQH-DEEVLIEKWLS-GPEFTVAIL---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P SV ++ ++Y KYL + + Y P +++
Sbjct: 194 GEEILP--------------SVRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ LG + RID V S+ G + N GM S
Sbjct: 239 ALVLKAWTTLGCKGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|P07862|DDLB_ECOLI D-alanine--D-alanine ligase B OS=Escherichia coli (strain K12)
GN=ddlB PE=1 SV=3
Length = 306
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS MDK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V+VKP+R GSS+G++ ++L+ A + + D+ V++E +L G EFT +L
Sbjct: 141 VIVKPSREGSSVGMSKVVAE-NALQDALRLAFQH-DEEVLIEKWLS-GPEFTVAIL---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ ++ ++Y KYL + + Y P +++
Sbjct: 194 GEEILP--------------SIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ LG + RID V S+ G + N GM S
Sbjct: 239 ALVLKAWTTLGCKGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|Q1IWG9|DDL_DEIGD D-alanine--D-alanine ligase OS=Deinococcus geothermalis (strain DSM
11300) GN=ddl PE=3 SV=1
Length = 339
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 127/329 (38%), Gaps = 74/329 (22%)
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
+ E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T LA +
Sbjct: 76 SAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK---QVLASV 132
Query: 479 GVLTI--NKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARL 530
G+ + VRR+ W E +++ + L VKPA G S G++++
Sbjct: 133 GMPQVAWRLAVRRE-----------WQERPQEVRARAGELGYPLFVKPANLGSSVGISKV 181
Query: 531 CCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590
P RA + F ++ + +
Sbjct: 182 SG-------------------PGELERALDLA--------------FSLGRRVILEAMTA 208
Query: 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650
+K E+ VG++G + S P ++ D E K+ G
Sbjct: 209 HKPR------------ELEVGILGNDAPIAS--PVGELRFEADFYDYETKYTEGRATMHI 254
Query: 651 PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710
P P + E ++ + L G +R+D F GE+ + EVNT+PG T T
Sbjct: 255 PAP---LPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLNEVNTMPGFT--T 309
Query: 711 VLIHQALSEQPPMYPHQFFRKVLDLGSER 739
++ L E + + ++++L ER
Sbjct: 310 TSMYPKLFEAAGLSYSELVTRLVELALER 338
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 35/208 (16%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
+ VKP GSS+G++ G L++A + + RV+ LE + L+VG
Sbjct: 165 LFVKPANLGSSVGISKVSGP-GELERALDLAFS-LGRRVI----LEAMTAHKPRELEVGI 218
Query: 100 GFDCHPVVLLPTEV-ELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ P+ + V EL+F+ ++Y KY + H P P + +
Sbjct: 219 LGNDAPIA---SPVGELRFEAD--------FYDYETKYT-EGRATMHIPAPLPPEIAERV 266
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R A F+ L AR+D +++ + G + ++N + G T
Sbjct: 267 RMLALTAFRTLDCAGLARVDFFYVEQT----------------GELFLNEVNTMPGFTTT 310
Query: 219 SFLFQQASKVGFSHSNILRTIIGHACSR 246
S + G S+S ++ ++ A R
Sbjct: 311 SMYPKLFEAAGLSYSELVTRLVELALER 338
>sp|B1JK79|DDL_YERPY D-alanine--D-alanine ligase OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|Q66EK3|DDL_YERPS D-alanine--D-alanine ligase OS=Yersinia pseudotuberculosis serotype
I (strain IP32953) GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|A4TQ81|DDL_YERPP D-alanine--D-alanine ligase OS=Yersinia pestis (strain Pestoides F)
GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|Q1CMM5|DDL_YERPN D-alanine--D-alanine ligase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|A9R122|DDL_YERPG D-alanine--D-alanine ligase OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|Q8ZIE7|DDL_YERPE D-alanine--D-alanine ligase OS=Yersinia pestis GN=ddl PE=1 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|B2K4E8|DDL_YERPB D-alanine--D-alanine ligase OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|Q1C216|DDL_YERPA D-alanine--D-alanine ligase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|A7FM64|DDL_YERP3 D-alanine--D-alanine ligase OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=ddl PE=3 SV=1
Length = 306
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 124/299 (41%), Gaps = 67/299 (22%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLA 476
+L ++ VFIA+HG GEDGTLQ +LE +PYTG GVMAS MDK+ T L L
Sbjct: 49 QLKEQGFDKVFIALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALG 108
Query: 477 DLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536
L I+ V +T + +KL L VKP+ +G S G++++ A +L
Sbjct: 109 ----LPISPYVALNRQQFETLSPEELVACVAKLGLP-LIVKPSHEGSSVGMSKVDHASEL 163
Query: 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596
KAL E ++D
Sbjct: 164 Q---KALVEAF-------------------------------------------QHDSDV 177
Query: 597 LMWKGNSRWV---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653
L+ +W+ E TV ++G ++PS+ ++ G + K+ P
Sbjct: 178 LI----EKWLSGPEFTVAILGD-----EVLPSIRIQPPGVFYDYDAKYLSDKTQYFCP-- 226
Query: 654 ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
S +S E+ + +AL G+ R+D + D G ++EVNT PGMT +++
Sbjct: 227 -SGLSDESEQQLAALALQAYHALDCSGWGRVDVMQDRD-GHFYLLEVNTSPGMTSHSLV 283
>sp|B0US69|DDL_HAES2 D-alanine--D-alanine ligase OS=Haemophilus somnus (strain 2336)
GN=ddl PE=3 SV=1
Length = 308
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 72/295 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 481
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + +AD+ V+
Sbjct: 63 VFNILHGRGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVV 122
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T +T + ++ + L VKP+ +G S G+ ++ +DL V+
Sbjct: 123 T------------RTSFSQLNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAVE 170
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
F+ + E ++ E ++ D
Sbjct: 171 -------------FALQYD---------ETVLIEEWLSGD-------------------- 188
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV V+G + ++PS+ + G+ E K+ P S ++ E
Sbjct: 189 -----ELTVPVLG-----NEVLPSIKIVPQGEFYDYEAKYIADNTQYFCP---SGLTEER 235
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ +Q ++ + + G+SRID ++ G+ ++EVNT PGMT ++ A
Sbjct: 236 EQELRQLVKQAYDVVGCRGWSRIDVMLD-GEGKFRLVEVNTNPGMTSHSLFPKSA 289
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+ GSS+G+T ID LK A L+ D+ V++E +L G E T VL
Sbjct: 143 LMVKPSLEGSSVGLT-KVNAIDDLKSAVEFALQ-YDETVLIEEWLS-GDELTVPVL---- 195
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ + + ++Y KY+ Y P +R
Sbjct: 196 GNEVLP--------------SIKIVPQGEFYDYEAKYI-ADNTQYFCPSGLTEEREQELR 240
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ + +G ++RID V E K+ ++N GM S
Sbjct: 241 QLVKQAYDVVGCRGWSRID---------VMLDGEGKF--------RLVEVNTNPGMTSHS 283
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A+ VG+S ++ I+
Sbjct: 284 LFPKSAATVGYSFEQLVVKIL 304
>sp|Q65RY9|DDL_MANSM D-alanine--D-alanine ligase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=ddl PE=3 SV=1
Length = 307
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 72/304 (23%)
Query: 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH-- 474
+L ++ F +HG GEDG +Q +LE G+PYTG GVM S MDK+ T +
Sbjct: 53 QLKEQGFERAFNILHGRGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFG 112
Query: 475 --LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC 532
+AD+ ++T R D L P+ E+ +L L VKP+R+G S G+ ++
Sbjct: 113 LPIADMEIVT-----RDTVDEL-NPL-----EVVERLGLP-LMVKPSREGSSVGLTKVNA 160
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
E+L N+ A D +L
Sbjct: 161 VEELK---------------NAVDLA------------------LTHDDTVLIEE----- 182
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPP 652
W +E+TV V+ ++P+V + G+ + K+ + P
Sbjct: 183 ------WLSG---IEMTVPVLD-----DQVLPAVQIIPEGEFYDYDAKYISDNTRYICPA 228
Query: 653 PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712
P MS E+L + ++ ++ + + G+SRID + NG ++EVNT PGMT ++
Sbjct: 229 P---MSEESLQELQKLVKRAYDVVGCRGWSRIDVMTDA-NGNFRLVEVNTTPGMTSHSLF 284
Query: 713 IHQA 716
A
Sbjct: 285 PKSA 288
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+R GSS+G+T ++ LK A + L DD V++E +L G E T VLD
Sbjct: 142 LMVKPSREGSSVGLT-KVNAVEELKNAVDLALTH-DDTVLIEEWL-SGIEMTVPVLDD-- 196
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
Q +V + + ++Y KY+ + Y P + ++
Sbjct: 197 ----------------QVLPAVQIIPEGEFYDYDAKYI-SDNTRYICPAPMSEESLQELQ 239
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ + +G ++RID V + + G ++N GM S
Sbjct: 240 KLVKRAYDVVGCRGWSRID---------VMTDAN--------GNFRLVEVNTTPGMTSHS 282
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A+ VG+S ++ I+
Sbjct: 283 LFPKSAATVGYSFEQLVVKIL 303
>sp|Q0I1D1|DDL_HAES1 D-alanine--D-alanine ligase OS=Haemophilus somnus (strain 129Pt)
GN=ddl PE=3 SV=1
Length = 308
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 72/295 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNH----LADLGVL 481
VF +HG GEDGT+Q LLE G+PYTG GVMAS MDK+ T + +AD+ V+
Sbjct: 63 VFNILHGRGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVV 122
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T +T + ++ + L VKP+ +G S G+ ++ +DL V+
Sbjct: 123 T------------RTSFSQLNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAVE 170
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
F+ + E ++ E ++ D
Sbjct: 171 -------------FALQYD---------ETVLIEEWLSGD-------------------- 188
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E+TV ++G + ++PS+ + G+ E K+ P S ++ E
Sbjct: 189 -----ELTVPILG-----NEVLPSIKIVPQGEFYDYEAKYIADNTQYFCP---SGLTEER 235
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ +Q ++ + + G+SRID ++ G+ ++EVNT PGMT ++ A
Sbjct: 236 EQELRQLVKQAYDVVGCRGWSRIDVMLD-GEGKFRLVEVNTNPGMTSHSLFPKSA 289
Score = 37.4 bits (85), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
++VKP+ GSS+G+T ID LK A L+ D+ V++E +L G E T +L
Sbjct: 143 LMVKPSLEGSSVGLT-KVNAIDDLKSAVEFALQ-YDETVLIEEWLS-GDELTVPIL---- 195
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ + + ++Y KY+ Y P +R
Sbjct: 196 GNEVLP--------------SIKIVPQGEFYDYEAKYI-ADNTQYFCPSGLTEEREQELR 240
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ + +G ++RID V E K+ ++N GM S
Sbjct: 241 QLVKQAYDVVGCRGWSRID---------VMLDGEGKF--------RLVEVNTNPGMTSHS 283
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A+ VG+S ++ I+
Sbjct: 284 LFPKSAATVGYSFEQLVVKIL 304
>sp|Q72IA9|DDL_THET2 D-alanine--D-alanine ligase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=ddl PE=3 SV=1
Length = 319
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 115/312 (36%), Gaps = 82/312 (26%)
Query: 418 LAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLAD 477
L E VF +HG GEDGT+Q LE G PY G GV AS CMDK L+ LA
Sbjct: 69 LPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDK---DLSKRVLAQ 125
Query: 478 LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLT 537
GV + RK + P VKPA G S G++R+ +DL
Sbjct: 126 AGVPVVPWVAVRKGEPSMVPF------------DPPFFVKPANTGSSVGISRVERFQDL- 172
Query: 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597
E L + + + +
Sbjct: 173 -------EAALAL--------------------------------------AFRYDEKAV 187
Query: 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
+ K S E+ VGV+G S P V+ E K+ G L P P
Sbjct: 188 VEKALSPVRELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPG 245
Query: 658 STEALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716
+ E + Q + L A L + G +R+D F+ GEV + E+NT+PG TP++
Sbjct: 246 TQETV----QELALKAYKVLGVRGMARVDFFLA--EGEVYLNELNTIPGFTPTS------ 293
Query: 717 LSEQPPMYPHQF 728
MYP F
Sbjct: 294 ------MYPRLF 299
>sp|O66806|DDL_AQUAE D-alanine--D-alanine ligase OS=Aquifex aeolicus (strain VF5) GN=ddl
PE=3 SV=1
Length = 291
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 131/315 (41%), Gaps = 83/315 (26%)
Query: 400 FDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMAS 459
D+ ELP KL + VFIA+HG GEDGT+Q LLE +PYTG +AS
Sbjct: 38 LDLDKELP--------CKLLEIKPDKVFIALHGRYGEDGTVQGLLEILDIPYTGSDTIAS 89
Query: 460 KTCMDKVATSLALNHLADLGVLTINKDVRRKE-DLLKTPIVDIWHELTSKLQCKTLCVKP 518
+DK T + LG+ T + + E D+L T W++ + VKP
Sbjct: 90 AVSIDKDFTKRIVKS---LGINTPDWETFISEGDVLNTE----WNKFPA-------VVKP 135
Query: 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578
R+G S G+ + E+L Y AL+ LL+ E ++ E FV
Sbjct: 136 VREGSSVGLKIVESLEELKEY--ALD--LLK------------------KTERVMVEEFV 173
Query: 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLE 638
E ++TVG++ +P V + + E
Sbjct: 174 EGR-------------------------DMTVGILK-----GEALPVVEIIPKKGVYDYE 203
Query: 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIEL-IANALQLEGFSRIDAFVNVDNGEVLI 697
K+ G I+ E L K Q I L I+ L L+ F+RID F G++
Sbjct: 204 CKYTKGMS------EYRILKDEKLSKKLQEISLKISKFLSLKDFARID-FRVTKEGKIFF 256
Query: 698 IEVNTVPGMTPSTVL 712
+EVNT+PGMT ++L
Sbjct: 257 LEVNTIPGMTELSLL 271
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 45/207 (21%)
Query: 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGID--DRVVVELFLEGGSEFTAI 93
N VVKP R GSS+G+ +++SL++ K L+ + +RV+VE F+EG I
Sbjct: 127 NKFPAVVKPVREGSSVGLK----IVESLEELKEYALDLLKKTERVMVEEFVEGRDMTVGI 182
Query: 94 VLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIV 153
+ + PV V++ K +++Y KY T+ ++ + + +
Sbjct: 183 LKG-----EALPV--------------VEIIPKKGVYDYECKY--TKGMSEYRILKDEKL 221
Query: 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS 213
++E + + + L L DFARID + T+ G I F ++N I
Sbjct: 222 S-KKLQEISLKISKFLSLKDFARID-----------------FRVTKEGKIFFLEVNTIP 263
Query: 214 GMEQTSFLFQQASKVGFSHSNILRTII 240
GM + S L A + G ++ II
Sbjct: 264 GMTELSLLPMAAKEKGMDFKKLISIII 290
>sp|Q3AS55|DDL_CHLCH D-alanine--D-alanine ligase OS=Chlorobium chlorochromatii (strain
CaD3) GN=ddl PE=3 SV=1
Length = 360
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 129/320 (40%), Gaps = 75/320 (23%)
Query: 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486
F+A+HG GEDG +Q LE G+PYTG GV+AS MDK T L +AD G+
Sbjct: 104 FLALHGSFGEDGRMQGFLETCGIPYTGCGVLASALTMDKALTKLC---VADAGIAVAQGT 160
Query: 487 VRRKEDLLKTPIVDIWHELTSKLQCKT---LCVKPARDGCSTGVARLCCAEDLTVYVKAL 543
D L P + + + ++ + L VKPA G S G++++ E+L ++A
Sbjct: 161 NILSADYLANP-----NAVEASVEAQVSYPLFVKPASLGSSIGISKVHNREELHPALQA- 214
Query: 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWK--- 600
A L WK
Sbjct: 215 --------------------------------------------------ACALDWKVVV 224
Query: 601 -GNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659
+ EI V V+G + S+ ++ + ++K+ G + PA I
Sbjct: 225 ESTVKGREIEVAVLGNADPIASVCGE--IEPGKEFYDFQDKYMGNSAKLFI--PARI--P 278
Query: 660 EALDKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALS 718
E+L + +R L A AL G +R+D FV+ V++ EVNT+PG T + ++ +
Sbjct: 279 ESLQEEVRRSALTAYRALGCSGMARVDFFVDESTNSVVLNEVNTIPGFT--DISMYPQMM 336
Query: 719 EQPPMYPHQFFRKVLDLGSE 738
E + ++L+L E
Sbjct: 337 EASGISYRNLITRLLELALE 356
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 41/202 (20%)
Query: 42 VKPTRAGSSIGVTVAYGVID---SLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVG 98
VKP GSSIG++ + + +L+ A + D +VVVE ++G E VL
Sbjct: 188 VKPASLGSSIGISKVHNREELHPALQAACAL-----DWKVVVESTVKG-REIEVAVLG-- 239
Query: 99 SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158
+ P+ + E+E ++++ KY+ + P R P + +
Sbjct: 240 ---NADPIASVCGEIE----------PGKEFYDFQDKYMGNSAKLF-IPARIPESLQEEV 285
Query: 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQT 218
R A ++ LG AR+D +F+ ST+ +++ ++N I G
Sbjct: 286 RRSALTAYRALGCSGMARVD-FFVDESTN---------------SVVLNEVNTIPGFTDI 329
Query: 219 SFLFQQASKVGFSHSNILRTII 240
S Q G S+ N++ ++
Sbjct: 330 SMYPQMMEASGISYRNLITRLL 351
>sp|Q83MF7|DDLB_SHIFL D-alanine--D-alanine ligase B OS=Shigella flexneri GN=ddlB PE=3
SV=1
Length = 306
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINK 485
VFIA+HG GEDGTLQ +LE G+PYTG GVMAS +DK+ + L L A L V
Sbjct: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL-LWQGAGLPVAPWVA 116
Query: 486 DVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE 545
R + + + D S L + VKP+R+G S G++++ V AL++
Sbjct: 117 LTRAE---FEKGLSDKQLAEISALGLPVI-VKPSREGSSVGMSKV-------VAENALQD 165
Query: 546 CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605
LR+ F +E+L +W
Sbjct: 166 A-LRL-------------------------AFQHDEEVLI-----------------EKW 182
Query: 606 V---EITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEAL 662
+ E TV ++G+ ++PS+ ++ SG E K+ PA + +++
Sbjct: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFC--PAGLEASQ-- 233
Query: 663 DKCKQRIELIA-NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
+ Q + L A L +G+ RID ++ D G+ ++E NT PGMT +++ A Q
Sbjct: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAA--RQA 290
Query: 722 PMYPHQFFRKVLDL 735
M Q ++L+L
Sbjct: 291 GMSFSQLVVRILEL 304
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 39/201 (19%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGS 99
V+VKP+R GSS+G++ ++L+ A + + D+ V++E +L G EFT +L
Sbjct: 141 VIVKPSREGSSVGMSKVVAE-NALQDALRLAFQH-DEEVLIEKWLS-GPEFTVAIL---- 193
Query: 100 GFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159
G + P S+ ++ ++Y KYL + + Y P +++
Sbjct: 194 GEEILP--------------SIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQ 238
Query: 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTS 219
+ LG + RID V S+ G + N GM S
Sbjct: 239 ALVLKAWTTLGCKGWGRID---------VMLDSD--------GQFYLLEANTSPGMTSHS 281
Query: 220 FLFQQASKVGFSHSNILRTII 240
+ A + G S S ++ I+
Sbjct: 282 LVPMAARQAGMSFSQLVVRIL 302
>sp|Q9RXF1|DDL_DEIRA D-alanine--D-alanine ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=ddl PE=3 SV=1
Length = 339
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 124/321 (38%), Gaps = 90/321 (28%)
Query: 419 AKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL 478
A E VF +HG +GEDGT+Q LL G+P+ G GV+ S MDKV T L+ A +
Sbjct: 76 AAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTKQVLDS-AGI 134
Query: 479 GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT------LCVKPARDGCSTGVARLCC 532
+ VRR+ W + ++ + L VKPA G S G++++
Sbjct: 135 PQVAWRLAVRRE-----------WQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGS 183
Query: 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNK 592
E+L + + A G+ ++ + + +K
Sbjct: 184 PEELDA---------------ALTLAFGL------------------DRRVILEAMTPHK 210
Query: 593 NADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP- 651
E+ VG++G + S P + D E K+ G P
Sbjct: 211 PR------------EVEVGILGNDVPVAS--PVGELSFDADFYDYETKYTEGRAEMHIPA 256
Query: 652 --PP--ASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
PP + + TEAL + AL G +R+D F + GE+ + EVNT+PG T
Sbjct: 257 RIPPEVSERIRTEALRAFR--------ALDCAGLARVDFFYVEETGELFLNEVNTMPGFT 308
Query: 708 PSTVLIHQALSEQPPMYPHQF 728
++ MYP F
Sbjct: 309 TTS------------MYPKLF 317
Score = 40.0 bits (92), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 33/199 (16%)
Query: 42 VKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGF 101
VKP GSS+G++ G + L A + G+D RV++E +V G
Sbjct: 167 VKPANLGSSVGIS-KVGSPEELDAALTLAF-GLDRRVILEAMTPHKPR------EVEVGI 218
Query: 102 DCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161
+ V + EL F ++Y KY + H P R P V IR
Sbjct: 219 LGNDVPVASPVGELSFDAD--------FYDYETKYT-EGRAEMHIPARIPPEVSERIRTE 269
Query: 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221
A F+ L AR+D +++ E G + ++N + G TS
Sbjct: 270 ALRAFRALDCAGLARVDFFYV----------------EETGELFLNEVNTMPGFTTTSMY 313
Query: 222 FQQASKVGFSHSNILRTII 240
+ G S+S ++ ++
Sbjct: 314 PKLFEAAGLSYSELVTRLV 332
>sp|Q47AA6|DDL_DECAR D-alanine--D-alanine ligase OS=Dechloromonas aromatica (strain RCB)
GN=ddl PE=3 SV=1
Length = 301
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 125/316 (39%), Gaps = 78/316 (24%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSL----ALNHLADLGVL 481
FIA+HG GEDGT+Q LE +PYTG GV+AS MDK T L A + + +L
Sbjct: 58 AFIALHGRHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALL 117
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
T + D E+ L P L VKPAR+G S GV K
Sbjct: 118 TADSDFADIEEELGLP----------------LFVKPAREGSSIGV------------TK 149
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
E L+ +R +P V ++ +
Sbjct: 150 VKERGALKAAYEEAAR----------------HDPLVIAEKGVMGG-------------- 179
Query: 602 NSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661
E TVG+IG MP + ++ + + E K+ L P + +
Sbjct: 180 -----EYTVGIIGD-----EAMPIIKIEPATEWYDYEAKYNRDDTRYLC--PCGLPEAKE 227
Query: 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQP 721
++ K +E L G+ R+D F+ ++G+ +EVNT PGMT + L+ A
Sbjct: 228 MEIRKGALEAF-RILGGRGWGRVD-FLMDEDGKYYFLEVNTAPGMTDHS-LVPMAARVNG 284
Query: 722 PMYPHQFFRKVLDLGS 737
YP R+VL+L +
Sbjct: 285 MDYP-TLVRRVLELAA 299
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 72/203 (35%), Gaps = 43/203 (21%)
Query: 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVVVELFLEGGSEFTAIVLDV 97
+ VKP R GSSIGVT + K E D V+ E + GG I+ D
Sbjct: 134 LFVKPAREGSSIGVT----KVKERGALKAAYEEAARHDPLVIAEKGVMGGEYTVGIIGD- 188
Query: 98 GSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157
+ P++ + E ++Y KY Y P P
Sbjct: 189 ----EAMPIIKIEPATEW--------------YDYEAKY-NRDDTRYLCPCGLPEAKEME 229
Query: 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQ 217
IR+GA F+ LG + R+D FL E G F ++N GM
Sbjct: 230 IRKGALEAFRILGGRGWGRVD--FL---------------MDEDGKYYFLEVNTAPGMTD 272
Query: 218 TSFLFQQASKVGFSHSNILRTII 240
S + A G + ++R ++
Sbjct: 273 HSLVPMAARVNGMDYPTLVRRVL 295
>sp|Q898Z5|DDLB_CLOTE D-alanine--D-alanine ligase B OS=Clostridium tetani (strain
Massachusetts / E88) GN=ddlB PE=3 SV=1
Length = 358
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 117/290 (40%), Gaps = 74/290 (25%)
Query: 426 VFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL----ADLGVL 481
VF +HG GEDGT+Q L + G+P GPGV++S CMDK+ T L + A+ V+
Sbjct: 104 VFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIYTKYVLENFKFKQANYVVV 163
Query: 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541
+ + KE+++K KLQ +KPA G S G+ + E+L +K
Sbjct: 164 NKFEYEKNKEEIIKE---------VEKLQYDVF-IKPANSGSSVGITKAHNKEEL---LK 210
Query: 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKG 601
LEE + +L+ E
Sbjct: 211 GLEEAFIH------------------DKNVLVEEAI------------------------ 228
Query: 602 NSRWVEITVGVIG----KCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657
N+R EI V V+G K ++P + + E K+Q L P +
Sbjct: 229 NAR--EIEVAVLGNDDPKAAVPGEIIP------AKEFYDYEAKYQNENSELLIPANIDNI 280
Query: 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707
E + + +I + L G +R+D ++ ++ EV EVNT+PG T
Sbjct: 281 KQEEIKELAIKIYKL---LGCSGLARVDFLMDKESNEVYFNEVNTLPGFT 327
Score = 36.6 bits (83), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 88/235 (37%), Gaps = 48/235 (20%)
Query: 25 SNWFVTNKLDPNSGK-------------VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL 71
+N+ V NK + K V +KP +GSS+G+T A+ + LK + +
Sbjct: 158 ANYVVVNKFEYEKNKEEIIKEVEKLQYDVFIKPANSGSSVGITKAHNKEELLKGLEEAFI 217
Query: 72 EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFN 131
D V+VE A ++V + P +P E+ + +E ++
Sbjct: 218 H--DKNVLVE------EAINAREIEVAVLGNDDPKAAVPGEI-------IPAKE---FYD 259
Query: 132 YRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSS 191
Y KY + P + I+E A +++ LG AR+D S V+
Sbjct: 260 YEAKY-QNENSELLIPANIDNIKQEEIKELAIKIYKLLGCSGLARVDFLMDKESNEVY-- 316
Query: 192 SETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHACSR 246
F ++N + G + S + G S+S ++ +I A +
Sbjct: 317 --------------FNEVNTLPGFTKISMYPKLWEASGKSYSALIDELIELAINN 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,483,659
Number of Sequences: 539616
Number of extensions: 11945886
Number of successful extensions: 32349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 29860
Number of HSP's gapped (non-prelim): 2219
length of query: 741
length of database: 191,569,459
effective HSP length: 125
effective length of query: 616
effective length of database: 124,117,459
effective search space: 76456354744
effective search space used: 76456354744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)