Query 004630
Match_columns 741
No_of_seqs 441 out of 3861
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14570 D-alanyl-alanine synt 100.0 3.1E-63 6.6E-68 542.6 36.4 344 279-740 2-350 (364)
2 PRK14568 vanB D-alanine--D-lac 100.0 3.4E-59 7.3E-64 509.7 35.3 338 277-738 1-342 (343)
3 PRK01966 ddl D-alanyl-alanine 100.0 4E-58 8.7E-63 499.2 35.9 333 277-738 1-333 (333)
4 PRK14572 D-alanyl-alanine synt 100.0 6.1E-58 1.3E-62 500.3 35.5 343 280-738 2-347 (347)
5 PRK14573 bifunctional D-alanyl 100.0 8.8E-57 1.9E-61 540.8 35.9 341 275-740 447-790 (809)
6 PRK14569 D-alanyl-alanine synt 100.0 5.7E-54 1.2E-58 459.3 33.5 295 277-736 1-295 (296)
7 COG1181 DdlA D-alanine-D-alani 100.0 5.5E-54 1.2E-58 457.7 32.9 314 278-736 1-316 (317)
8 PRK14571 D-alanyl-alanine synt 100.0 5.3E-51 1.1E-55 437.5 34.9 298 280-739 1-298 (299)
9 TIGR01205 D_ala_D_alaTIGR D-al 100.0 2.1E-46 4.5E-51 404.7 36.4 312 281-736 1-315 (315)
10 PRK01372 ddl D-alanine--D-alan 100.0 8.6E-44 1.9E-48 382.5 36.3 302 277-739 2-303 (304)
11 PLN02735 carbamoyl-phosphate s 100.0 1.5E-40 3.2E-45 406.2 55.6 527 1-720 152-888 (1102)
12 PRK05294 carB carbamoyl phosph 100.0 3E-38 6.5E-43 388.8 53.9 512 1-705 136-842 (1066)
13 TIGR01369 CPSaseII_lrg carbamo 100.0 6.1E-37 1.3E-41 375.9 54.0 510 1-705 135-842 (1050)
14 PRK12815 carB carbamoyl phosph 100.0 7E-37 1.5E-41 375.5 50.8 509 1-706 136-841 (1068)
15 PF07478 Dala_Dala_lig_C: D-al 100.0 8.8E-37 1.9E-41 307.9 21.7 200 475-734 2-203 (203)
16 PF07478 Dala_Dala_lig_C: D-al 100.0 1.3E-36 2.9E-41 306.6 20.1 201 1-241 2-203 (203)
17 PRK14570 D-alanyl-alanine synt 100.0 5.9E-32 1.3E-36 296.1 24.7 210 1-249 137-352 (364)
18 PRK14572 D-alanyl-alanine synt 100.0 8.2E-31 1.8E-35 286.6 24.4 208 1-245 138-347 (347)
19 PRK01966 ddl D-alanyl-alanine 100.0 3.1E-30 6.8E-35 280.6 24.5 202 1-244 131-332 (333)
20 PRK10446 ribosomal protein S6 100.0 6.2E-30 1.3E-34 274.5 25.4 235 422-740 57-294 (300)
21 PRK06524 biotin carboxylase-li 100.0 4E-29 8.6E-34 276.8 25.9 217 422-709 106-329 (493)
22 PRK14568 vanB D-alanine--D-lac 100.0 2.5E-29 5.4E-34 274.6 23.6 200 1-245 140-342 (343)
23 PLN02735 carbamoyl-phosphate s 100.0 2.3E-28 5E-33 299.4 32.9 229 420-716 96-331 (1102)
24 PRK14573 bifunctional D-alanyl 100.0 7.6E-29 1.6E-33 298.9 24.9 212 1-249 576-792 (809)
25 PRK14569 D-alanyl-alanine synt 100.0 1.1E-28 2.3E-33 264.3 23.0 190 1-243 106-295 (296)
26 PRK14571 D-alanyl-alanine synt 100.0 4.8E-28 1E-32 259.8 24.8 194 4-246 105-298 (299)
27 PRK01372 ddl D-alanine--D-alan 100.0 1.4E-26 3E-31 249.1 25.2 198 1-246 106-303 (304)
28 COG1181 DdlA D-alanine-D-alani 99.9 9.2E-27 2E-31 248.8 20.5 205 2-243 112-316 (317)
29 TIGR01205 D_ala_D_alaTIGR D-al 99.9 3.3E-26 7.1E-31 247.3 23.4 200 1-243 113-315 (315)
30 PRK13789 phosphoribosylamine-- 99.9 1.3E-25 2.8E-30 251.3 25.3 245 421-737 67-320 (426)
31 PLN02948 phosphoribosylaminoim 99.9 6.8E-25 1.5E-29 253.1 30.9 210 423-709 84-295 (577)
32 TIGR01369 CPSaseII_lrg carbamo 99.9 7.1E-25 1.5E-29 269.6 32.2 229 420-716 79-312 (1050)
33 PRK12815 carB carbamoyl phosph 99.9 6.5E-25 1.4E-29 270.1 30.8 229 420-716 80-313 (1068)
34 PRK05294 carB carbamoyl phosph 99.9 6.5E-25 1.4E-29 270.9 30.4 229 420-715 80-313 (1066)
35 PF01820 Dala_Dala_lig_N: D-al 99.9 4.9E-27 1.1E-31 216.0 5.8 117 280-454 1-117 (117)
36 PLN02257 phosphoribosylamine-- 99.9 1.2E-24 2.6E-29 243.6 25.4 245 421-737 61-315 (434)
37 PRK05586 biotin carboxylase; V 99.9 3.6E-24 7.9E-29 242.2 25.4 221 421-707 73-296 (447)
38 TIGR00514 accC acetyl-CoA carb 99.9 7E-24 1.5E-28 240.1 25.3 222 420-707 72-296 (449)
39 PRK13790 phosphoribosylamine-- 99.9 7.9E-24 1.7E-28 234.1 22.9 243 421-737 26-275 (379)
40 PRK08462 biotin carboxylase; V 99.9 3E-23 6.4E-28 234.9 25.3 222 421-707 75-298 (445)
41 PRK08654 pyruvate carboxylase 99.9 2.7E-23 5.9E-28 236.6 24.9 221 421-707 73-295 (499)
42 PRK12833 acetyl-CoA carboxylas 99.9 4.5E-23 9.7E-28 234.2 26.5 242 421-737 76-320 (467)
43 PRK08591 acetyl-CoA carboxylas 99.9 3.3E-23 7.2E-28 234.9 25.0 221 421-707 73-296 (451)
44 PRK07178 pyruvate carboxylase 99.9 5.1E-23 1.1E-27 234.0 25.0 222 421-707 72-295 (472)
45 PRK08463 acetyl-CoA carboxylas 99.9 1E-22 2.2E-27 231.8 25.8 222 421-707 72-296 (478)
46 PRK06111 acetyl-CoA carboxylas 99.9 1.9E-22 4.1E-27 228.7 25.4 222 421-707 73-296 (450)
47 PRK00885 phosphoribosylamine-- 99.9 1.6E-22 3.4E-27 227.2 24.3 224 421-709 61-293 (420)
48 TIGR01161 purK phosphoribosyla 99.9 3.6E-22 7.8E-27 219.2 24.9 193 439-707 74-268 (352)
49 TIGR01142 purT phosphoribosylg 99.9 9.4E-22 2E-26 218.1 25.2 216 421-709 61-277 (380)
50 PRK06019 phosphoribosylaminoim 99.9 8.4E-22 1.8E-26 217.7 22.9 182 451-707 87-270 (372)
51 TIGR00877 purD phosphoribosyla 99.9 1E-21 2.2E-26 221.0 23.4 226 421-709 63-295 (423)
52 TIGR00768 rimK_fam alpha-L-glu 99.9 1.3E-21 2.9E-26 207.0 22.1 215 422-710 48-262 (277)
53 TIGR01235 pyruv_carbox pyruvat 99.9 4.8E-21 1E-25 233.8 27.8 223 421-707 73-296 (1143)
54 TIGR02144 LysX_arch Lysine bio 99.9 4.3E-21 9.4E-26 203.8 23.6 213 422-709 47-259 (280)
55 COG0458 CarB Carbamoylphosphat 99.9 7.8E-21 1.7E-25 203.1 24.6 243 420-735 68-314 (400)
56 TIGR02712 urea_carbox urea car 99.9 8.8E-21 1.9E-25 233.9 28.1 223 421-707 72-295 (1201)
57 PRK05784 phosphoribosylamine-- 99.9 2E-20 4.4E-25 211.7 24.5 249 421-738 68-336 (486)
58 PRK06395 phosphoribosylamine-- 99.9 4.3E-20 9.3E-25 207.4 24.5 244 421-738 64-319 (435)
59 PRK09288 purT phosphoribosylgl 99.9 5.7E-20 1.2E-24 204.9 24.8 214 421-708 74-289 (395)
60 PRK07206 hypothetical protein; 99.9 5.9E-20 1.3E-24 206.2 24.8 217 421-710 69-294 (416)
61 PRK08654 pyruvate carboxylase 99.9 8.7E-21 1.9E-25 216.1 17.9 233 1-290 123-364 (499)
62 COG0439 AccC Biotin carboxylas 99.8 6.7E-20 1.5E-24 202.8 22.7 242 422-737 74-317 (449)
63 PRK12999 pyruvate carboxylase; 99.8 1.7E-19 3.6E-24 221.5 27.1 221 421-707 77-300 (1146)
64 PRK12767 carbamoyl phosphate s 99.8 7.4E-20 1.6E-24 198.7 21.3 202 421-706 68-272 (326)
65 PRK12833 acetyl-CoA carboxylas 99.8 6.8E-20 1.5E-24 208.2 20.2 232 1-288 126-366 (467)
66 PRK07178 pyruvate carboxylase 99.8 3.9E-20 8.5E-25 210.4 18.0 233 1-289 122-363 (472)
67 PRK08463 acetyl-CoA carboxylas 99.8 9.4E-20 2E-24 207.5 20.0 236 1-289 122-364 (478)
68 PRK06524 biotin carboxylase-li 99.8 1E-19 2.2E-24 202.2 19.6 197 1-241 150-349 (493)
69 PRK02186 argininosuccinate lya 99.8 2.3E-19 5.1E-24 218.3 24.3 219 439-737 84-303 (887)
70 PF13535 ATP-grasp_4: ATP-gras 99.8 1E-19 2.2E-24 180.2 16.2 180 461-706 1-181 (184)
71 PRK05586 biotin carboxylase; V 99.8 1.3E-19 2.9E-24 205.0 19.2 227 1-283 123-358 (447)
72 TIGR00514 accC acetyl-CoA carb 99.8 1.1E-19 2.4E-24 205.9 18.3 234 1-290 123-365 (449)
73 PF02786 CPSase_L_D2: Carbamoy 99.8 4.8E-19 1E-23 179.6 20.7 205 464-738 1-205 (211)
74 PRK10446 ribosomal protein S6 99.8 3.5E-19 7.6E-24 191.3 20.5 184 1-247 107-294 (300)
75 TIGR01235 pyruv_carbox pyruvat 99.8 1.7E-19 3.8E-24 220.3 20.1 234 1-290 123-371 (1143)
76 PRK13789 phosphoribosylamine-- 99.8 3.3E-19 7.2E-24 199.7 20.6 197 1-247 116-323 (426)
77 TIGR01161 purK phosphoribosyla 99.8 3E-19 6.5E-24 196.1 19.9 183 1-244 106-289 (352)
78 COG0439 AccC Biotin carboxylas 99.8 4.2E-19 9.1E-24 196.5 21.0 249 1-303 123-378 (449)
79 PRK06019 phosphoribosylaminoim 99.8 3.7E-19 8E-24 196.7 20.5 182 1-243 108-290 (372)
80 PLN02948 phosphoribosylaminoim 99.8 3.5E-19 7.6E-24 205.8 21.1 187 1-246 129-316 (577)
81 KOG0238 3-Methylcrotonyl-CoA c 99.8 9.2E-19 2E-23 187.8 19.9 237 429-737 73-313 (670)
82 PLN02257 phosphoribosylamine-- 99.8 1.1E-18 2.3E-23 195.8 21.5 195 1-246 110-317 (434)
83 COG4770 Acetyl/propionyl-CoA c 99.8 1.2E-18 2.6E-23 190.2 20.3 237 429-737 77-317 (645)
84 TIGR01142 purT phosphoribosylg 99.8 1.3E-18 2.8E-23 193.1 20.5 186 2-245 110-297 (380)
85 PRK08591 acetyl-CoA carboxylas 99.8 1.1E-18 2.3E-23 198.1 19.9 225 1-281 123-356 (451)
86 PF15632 ATPgrasp_Ter: ATP-gra 99.8 3.8E-18 8.3E-23 182.5 19.3 226 420-732 64-303 (329)
87 PRK12999 pyruvate carboxylase; 99.8 1.7E-18 3.7E-23 212.7 19.0 234 1-290 127-375 (1146)
88 PRK13790 phosphoribosylamine-- 99.8 3.7E-18 8.1E-23 189.0 18.7 196 1-246 75-277 (379)
89 PF02786 CPSase_L_D2: Carbamoy 99.8 2.5E-18 5.5E-23 174.3 15.9 191 1-246 9-206 (211)
90 COG4770 Acetyl/propionyl-CoA c 99.8 3.5E-18 7.6E-23 186.5 17.6 234 1-288 123-363 (645)
91 PRK08462 biotin carboxylase; V 99.8 1E-17 2.3E-22 189.7 20.2 224 1-281 125-356 (445)
92 PF02222 ATP-grasp: ATP-grasp 99.8 7.1E-18 1.5E-22 165.2 16.2 161 1-215 1-163 (172)
93 PRK07206 hypothetical protein; 99.8 2.1E-17 4.5E-22 185.7 20.8 191 1-246 116-316 (416)
94 PRK00885 phosphoribosylamine-- 99.8 2.2E-17 4.9E-22 185.6 20.6 195 1-246 110-315 (420)
95 PF13535 ATP-grasp_4: ATP-gras 99.8 1E-17 2.2E-22 165.9 15.6 165 2-214 13-180 (184)
96 PRK09288 purT phosphoribosylgl 99.8 3.2E-17 6.9E-22 182.9 20.3 186 2-245 123-310 (395)
97 TIGR02712 urea_carbox urea car 99.7 3.8E-17 8.3E-22 201.9 21.2 226 1-281 122-357 (1201)
98 KOG0238 3-Methylcrotonyl-CoA c 99.7 3.1E-17 6.7E-22 176.2 15.3 233 1-288 119-358 (670)
99 PF02222 ATP-grasp: ATP-grasp 99.7 8E-17 1.7E-21 157.8 16.7 164 475-709 1-166 (172)
100 TIGR02144 LysX_arch Lysine bio 99.7 1E-16 2.2E-21 170.3 18.4 180 1-242 95-277 (280)
101 PRK06111 acetyl-CoA carboxylas 99.7 1.4E-16 2.9E-21 180.9 19.8 190 1-246 123-319 (450)
102 COG0027 PurT Formate-dependent 99.7 2.1E-16 4.6E-21 161.6 18.9 215 420-708 73-289 (394)
103 COG1038 PycA Pyruvate carboxyl 99.7 1.6E-16 3.4E-21 178.1 19.4 247 412-722 69-325 (1149)
104 PRK02186 argininosuccinate lya 99.7 1.8E-16 3.8E-21 193.2 21.8 189 1-246 115-305 (887)
105 PF08443 RimK: RimK-like ATP-g 99.7 6.9E-17 1.5E-21 161.9 14.5 174 462-709 1-174 (190)
106 TIGR01435 glu_cys_lig_rel glut 99.7 1.4E-16 3E-21 185.8 19.1 199 455-709 466-717 (737)
107 PRK06849 hypothetical protein; 99.7 1.8E-16 3.9E-21 176.5 18.6 202 421-706 75-278 (389)
108 PRK13278 purP 5-formaminoimida 99.7 1.1E-15 2.4E-20 166.0 23.1 213 427-708 88-317 (358)
109 TIGR00877 purD phosphoribosyla 99.7 2.9E-16 6.4E-21 176.7 19.0 195 1-246 112-317 (423)
110 PRK02471 bifunctional glutamat 99.7 7.8E-16 1.7E-20 182.3 20.9 198 451-709 474-731 (752)
111 TIGR00768 rimK_fam alpha-L-glu 99.7 5.6E-16 1.2E-20 164.0 17.2 177 1-238 96-275 (277)
112 PF01071 GARS_A: Phosphoribosy 99.7 2.5E-16 5.4E-21 155.8 13.3 169 1-214 10-190 (194)
113 PF02655 ATP-grasp_3: ATP-gras 99.7 1.2E-16 2.6E-21 155.9 10.7 157 462-705 1-159 (161)
114 COG0151 PurD Phosphoribosylami 99.7 2.2E-15 4.8E-20 161.8 20.2 223 421-705 62-290 (428)
115 PRK06395 phosphoribosylamine-- 99.7 9E-16 2E-20 172.5 17.3 193 1-246 113-320 (435)
116 PRK12767 carbamoyl phosphate s 99.7 3.1E-15 6.7E-20 162.5 18.8 172 1-239 119-291 (326)
117 COG1038 PycA Pyruvate carboxyl 99.7 1.6E-15 3.6E-20 170.0 16.4 237 2-292 130-379 (1149)
118 COG0189 RimK Glutathione synth 99.6 8.3E-15 1.8E-19 157.4 21.0 214 422-708 78-293 (318)
119 TIGR03103 trio_acet_GNAT GNAT- 99.6 3.8E-15 8.2E-20 171.7 19.3 201 455-709 288-527 (547)
120 PRK14016 cyanophycin synthetas 99.6 5.8E-15 1.3E-19 175.5 21.4 111 439-585 191-302 (727)
121 COG0026 PurK Phosphoribosylami 99.6 1.1E-14 2.5E-19 154.3 21.1 183 453-709 88-272 (375)
122 PF01071 GARS_A: Phosphoribosy 99.6 6.6E-15 1.4E-19 145.8 17.2 182 464-705 2-190 (194)
123 KOG0370 Multifunctional pyrimi 99.6 2E-14 4.3E-19 163.2 22.5 210 424-703 995-1204(1435)
124 PRK05784 phosphoribosylamine-- 99.6 1.3E-14 2.9E-19 164.5 20.5 195 1-247 117-338 (486)
125 TIGR02068 cya_phycin_syn cyano 99.6 1.7E-14 3.6E-19 174.7 21.6 98 454-585 203-301 (864)
126 TIGR02291 rimK_rel_E_lig alpha 99.6 7.8E-14 1.7E-18 148.6 22.7 233 433-726 12-285 (317)
127 COG0151 PurD Phosphoribosylami 99.6 7.7E-15 1.7E-19 157.7 14.5 176 1-215 111-291 (428)
128 PF02655 ATP-grasp_3: ATP-gras 99.6 3.2E-15 7E-20 145.8 10.4 148 1-214 11-159 (161)
129 PLN02941 inositol-tetrakisphos 99.6 9E-14 2E-18 149.1 21.7 236 422-735 66-323 (328)
130 COG0026 PurK Phosphoribosylami 99.6 3.8E-14 8.2E-19 150.4 18.0 167 1-222 107-274 (375)
131 PRK13278 purP 5-formaminoimida 99.6 5E-14 1.1E-18 153.2 19.2 200 1-246 131-350 (358)
132 PF08443 RimK: RimK-like ATP-g 99.6 1.5E-14 3.2E-19 145.1 13.6 176 1-238 11-188 (190)
133 KOG0369 Pyruvate carboxylase [ 99.6 6.1E-14 1.3E-18 154.5 19.3 248 414-725 97-354 (1176)
134 COG0027 PurT Formate-dependent 99.6 3.3E-14 7.2E-19 145.7 14.3 164 2-216 123-288 (394)
135 COG1821 Predicted ATP-utilizin 99.6 8E-14 1.7E-18 139.2 16.1 192 414-706 65-258 (307)
136 KOG0369 Pyruvate carboxylase [ 99.5 5.5E-14 1.2E-18 154.8 14.3 233 3-289 157-399 (1176)
137 PRK13277 5-formaminoimidazole- 99.5 2.8E-13 6E-18 145.2 18.8 231 428-730 89-339 (366)
138 PF15632 ATPgrasp_Ter: ATP-gra 99.5 3.6E-13 7.7E-18 144.5 18.4 172 1-237 115-300 (329)
139 COG0458 CarB Carbamoylphosphat 99.5 5.7E-13 1.2E-17 143.2 17.2 183 1-234 124-307 (400)
140 PRK06849 hypothetical protein; 99.5 4.1E-13 8.8E-18 149.6 15.1 153 1-214 124-277 (389)
141 PRK13277 5-formaminoimidazole- 99.5 5.8E-13 1.3E-17 142.8 15.3 184 1-236 134-337 (366)
142 KOG0368 Acetyl-CoA carboxylase 99.5 1.3E-12 2.8E-17 153.8 18.0 222 421-704 136-377 (2196)
143 COG0189 RimK Glutathione synth 99.5 1.4E-12 2.9E-17 140.4 16.6 189 1-246 127-317 (318)
144 TIGR01435 glu_cys_lig_rel glut 99.4 1E-12 2.2E-17 153.7 16.4 188 1-216 483-715 (737)
145 TIGR03103 trio_acet_GNAT GNAT- 99.4 1E-12 2.3E-17 151.6 15.6 178 1-218 305-527 (547)
146 TIGR02291 rimK_rel_E_lig alpha 99.4 9.2E-12 2E-16 132.8 19.0 184 1-233 45-285 (317)
147 PRK02471 bifunctional glutamat 99.4 3.6E-12 7.9E-17 151.3 15.0 85 1-96 496-583 (752)
148 TIGR02068 cya_phycin_syn cyano 99.4 5.5E-12 1.2E-16 153.0 15.8 84 1-96 221-305 (864)
149 PRK14016 cyanophycin synthetas 99.4 8.6E-12 1.9E-16 148.6 16.2 84 1-96 222-306 (727)
150 PRK12458 glutathione synthetas 99.3 1.3E-10 2.9E-15 126.7 20.1 203 422-705 79-300 (338)
151 KOG0368 Acetyl-CoA carboxylase 99.3 1.5E-11 3.3E-16 145.1 13.3 218 36-308 238-476 (2196)
152 KOG0237 Glycinamide ribonucleo 99.3 9.1E-11 2E-15 128.8 18.1 209 439-706 83-297 (788)
153 COG3919 Predicted ATP-grasp en 99.3 9.1E-11 2E-15 119.6 15.2 209 427-705 75-289 (415)
154 TIGR01380 glut_syn glutathione 99.3 3E-10 6.4E-15 122.8 20.3 201 422-703 78-284 (312)
155 PRK05246 glutathione synthetas 99.2 1.8E-09 3.8E-14 117.0 24.0 198 422-704 79-287 (316)
156 KOG0237 Glycinamide ribonucleo 99.2 3.1E-10 6.8E-15 124.7 17.9 182 1-221 116-303 (788)
157 COG3919 Predicted ATP-grasp en 99.2 4E-11 8.7E-16 122.1 8.6 174 2-233 123-303 (415)
158 PLN02941 inositol-tetrakisphos 99.2 5.2E-10 1.1E-14 120.3 17.3 187 6-245 127-325 (328)
159 COG2232 Predicted ATP-dependen 99.2 2.5E-10 5.3E-15 118.4 13.0 197 417-706 78-276 (389)
160 COG1821 Predicted ATP-utilizin 99.0 6.3E-10 1.4E-14 111.6 8.6 117 39-214 140-257 (307)
161 COG2232 Predicted ATP-dependen 99.0 2.3E-09 4.9E-14 111.4 12.2 140 38-232 150-289 (389)
162 KOG0370 Multifunctional pyrimi 98.9 2.6E-09 5.6E-14 122.4 10.5 189 1-241 1041-1229(1435)
163 TIGR01016 sucCoAbeta succinyl- 98.9 7.2E-09 1.6E-13 115.4 13.8 154 1-179 12-198 (386)
164 PRK12458 glutathione synthetas 98.9 5.4E-08 1.2E-12 106.3 19.1 176 6-246 139-327 (338)
165 TIGR01380 glut_syn glutathione 98.9 5.4E-08 1.2E-12 105.3 18.9 173 6-242 132-310 (312)
166 TIGR01016 sucCoAbeta succinyl- 98.9 2E-08 4.3E-13 111.9 15.7 181 464-700 4-214 (386)
167 PRK05246 glutathione synthetas 98.8 1.8E-07 3.9E-12 101.4 19.7 171 7-242 134-311 (316)
168 PF14397 ATPgrasp_ST: Sugar-tr 98.7 6E-07 1.3E-11 95.7 19.2 218 454-707 16-263 (285)
169 PF14398 ATPgrasp_YheCD: YheC/ 98.7 1.8E-06 3.8E-11 91.1 19.8 204 443-709 3-238 (262)
170 PF05770 Ins134_P3_kin: Inosit 98.6 8.3E-07 1.8E-11 94.5 16.6 221 422-710 52-295 (307)
171 PRK00696 sucC succinyl-CoA syn 98.4 8.9E-06 1.9E-10 90.8 16.3 91 1-99 12-117 (388)
172 PF14398 ATPgrasp_YheCD: YheC/ 98.3 8.2E-06 1.8E-10 86.0 14.4 161 8-216 36-236 (262)
173 PF02955 GSH-S_ATP: Prokaryoti 98.3 6.4E-06 1.4E-10 80.9 11.5 144 482-702 12-160 (173)
174 PF02955 GSH-S_ATP: Prokaryoti 98.3 7.1E-06 1.5E-10 80.6 11.3 79 8-96 12-92 (173)
175 PF14397 ATPgrasp_ST: Sugar-tr 98.1 8E-05 1.7E-09 79.5 16.9 44 155-216 218-263 (285)
176 PF05770 Ins134_P3_kin: Inosit 98.1 4.3E-05 9.2E-10 81.6 14.6 173 4-217 111-293 (307)
177 PF14305 ATPgrasp_TupA: TupA-l 98.1 0.00012 2.5E-09 76.2 16.2 206 459-708 15-222 (239)
178 PRK00696 sucC succinyl-CoA syn 98.0 0.00017 3.7E-09 80.6 18.2 109 463-616 3-116 (388)
179 PF03133 TTL: Tubulin-tyrosine 98.0 4E-05 8.6E-10 82.2 11.5 47 678-737 235-281 (292)
180 COG1759 5-formaminoimidazole-4 97.8 0.0005 1.1E-08 72.1 14.9 182 36-246 149-353 (361)
181 PF03133 TTL: Tubulin-tyrosine 97.8 0.00021 4.5E-09 76.6 12.0 42 39-85 67-108 (292)
182 KOG3895 Synaptic vesicle prote 97.7 0.00059 1.3E-08 71.9 13.7 211 422-709 155-374 (488)
183 PF08442 ATP-grasp_2: ATP-gras 97.7 0.00018 3.9E-09 72.6 9.5 91 1-99 11-116 (202)
184 PRK14046 malate--CoA ligase su 97.6 0.0013 2.9E-08 73.3 16.0 90 1-99 12-117 (392)
185 PF02750 Synapsin_C: Synapsin, 97.5 0.0017 3.7E-08 64.0 12.9 169 456-702 3-176 (203)
186 PF14305 ATPgrasp_TupA: TupA-l 97.4 0.0022 4.7E-08 66.7 12.9 149 33-216 52-221 (239)
187 COG0045 SucC Succinyl-CoA synt 97.3 0.0051 1.1E-07 66.7 14.9 91 1-99 12-115 (387)
188 COG1759 5-formaminoimidazole-4 97.3 0.0078 1.7E-07 63.4 15.2 214 429-708 90-320 (361)
189 PLN00124 succinyl-CoA ligase [ 97.2 0.0053 1.2E-07 68.8 14.8 91 1-98 39-151 (422)
190 COG0045 SucC Succinyl-CoA synt 97.1 0.0089 1.9E-07 64.9 14.2 93 465-580 5-101 (387)
191 PF02750 Synapsin_C: Synapsin, 97.0 0.007 1.5E-07 59.7 11.7 128 36-211 49-176 (203)
192 PF13549 ATP-grasp_5: ATP-gras 96.9 0.004 8.7E-08 63.9 9.2 104 464-616 11-121 (222)
193 PF13549 ATP-grasp_5: ATP-gras 96.6 0.0044 9.6E-08 63.6 6.9 90 1-99 19-122 (222)
194 PLN00124 succinyl-CoA ligase [ 96.6 0.081 1.8E-06 59.5 17.0 63 464-538 31-106 (422)
195 PRK14046 malate--CoA ligase su 96.4 0.13 2.7E-06 57.6 17.5 106 465-616 5-116 (392)
196 PF08442 ATP-grasp_2: ATP-gras 96.4 0.019 4.1E-07 58.1 9.7 96 465-581 4-104 (202)
197 PLN02235 ATP citrate (pro-S)-l 96.4 0.091 2E-06 58.6 15.5 94 465-581 8-114 (423)
198 PF14403 CP_ATPgrasp_2: Circul 96.3 0.048 1E-06 61.3 13.4 48 512-581 339-386 (445)
199 PLN02235 ATP citrate (pro-S)-l 96.2 0.1 2.2E-06 58.2 15.0 90 4-99 23-126 (423)
200 KOG2156 Tubulin-tyrosine ligas 94.4 0.073 1.6E-06 59.4 6.1 51 658-709 439-505 (662)
201 PF14243 DUF4343: Domain of un 92.2 0.85 1.8E-05 42.8 8.8 23 680-703 93-115 (130)
202 KOG2157 Predicted tubulin-tyro 91.6 0.69 1.5E-05 52.9 8.8 29 681-710 379-407 (497)
203 KOG2156 Tubulin-tyrosine ligas 91.3 0.76 1.6E-05 51.7 8.5 36 40-85 308-343 (662)
204 PF14243 DUF4343: Domain of un 91.2 2.6 5.6E-05 39.6 10.9 54 39-96 3-56 (130)
205 KOG3895 Synaptic vesicle prote 90.4 0.97 2.1E-05 48.4 7.9 59 36-96 238-296 (488)
206 KOG1057 Arp2/3 complex-interac 89.8 3.1 6.7E-05 49.0 11.9 165 1-211 138-321 (1018)
207 KOG1057 Arp2/3 complex-interac 86.9 1.7 3.6E-05 51.1 7.3 86 427-521 94-188 (1018)
208 PRK05849 hypothetical protein; 84.8 1.1E+02 0.0023 37.7 21.8 192 463-703 9-215 (783)
209 PF14403 CP_ATPgrasp_2: Circul 80.9 3.8 8.3E-05 46.4 7.0 43 39-85 340-384 (445)
210 PF06973 DUF1297: Domain of un 78.6 39 0.00084 33.5 12.1 85 145-246 85-180 (188)
211 PF11379 DUF3182: Protein of u 77.7 6.9 0.00015 42.3 7.3 52 511-581 136-187 (355)
212 PF07065 D123: D123; InterPro 69.4 69 0.0015 34.5 12.6 49 659-708 194-243 (299)
213 TIGR02049 gshA_ferroox glutama 55.4 72 0.0016 35.2 9.4 68 39-114 258-333 (403)
214 PF11379 DUF3182: Protein of u 55.1 22 0.00047 38.6 5.5 61 36-96 135-196 (355)
215 PRK02264 N(5),N(10)-methenylte 48.0 38 0.00081 36.4 5.8 79 203-290 134-234 (317)
216 PF00289 CPSase_L_chain: Carba 47.4 13 0.00029 33.8 2.1 37 421-458 73-109 (110)
217 cd00545 MCH Methenyltetrahydro 47.0 29 0.00064 37.1 4.9 83 203-290 133-233 (312)
218 TIGR03120 one_C_mch methenylte 45.7 31 0.00067 37.0 4.8 83 203-290 133-233 (312)
219 KOG2799 Succinyl-CoA synthetas 43.8 26 0.00057 38.2 3.9 62 1-70 34-106 (434)
220 PF06973 DUF1297: Domain of un 40.6 1.4E+02 0.0031 29.7 8.1 51 657-708 90-147 (188)
221 TIGR02049 gshA_ferroox glutama 38.0 1.6E+02 0.0034 32.7 8.6 55 514-581 260-314 (403)
222 PF08886 GshA: Glutamate-cyste 34.3 44 0.00094 36.9 3.9 47 39-85 261-315 (404)
223 KOG2157 Predicted tubulin-tyro 32.4 34 0.00073 39.5 2.8 49 37-85 199-250 (497)
224 KOG1447 GTP-specific succinyl- 32.0 1.5E+02 0.0033 31.1 7.1 90 1-98 31-142 (412)
225 PF06849 DUF1246: Protein of u 29.6 39 0.00085 31.3 2.2 54 429-486 70-123 (124)
226 PRK05878 pyruvate phosphate di 28.6 6.6E+02 0.014 29.5 12.5 41 659-703 257-297 (530)
227 PF08886 GshA: Glutamate-cyste 28.4 1.3E+02 0.0028 33.4 6.2 55 514-581 263-317 (404)
228 PHA02117 glutathionylspermidin 27.3 1.7E+02 0.0037 32.9 7.2 54 657-715 88-142 (397)
229 KOG2799 Succinyl-CoA synthetas 24.6 90 0.002 34.2 4.1 67 460-537 22-99 (434)
230 smart00878 Biotin_carb_C Bioti 23.9 29 0.00062 31.4 0.3 40 261-300 1-40 (107)
231 PRK05849 hypothetical protein; 23.7 1.5E+03 0.032 28.1 17.0 174 4-214 23-215 (783)
232 COG0754 Gsp Glutathionylspermi 22.3 2.5E+02 0.0055 30.9 7.0 39 668-710 86-124 (387)
233 PF07065 D123: D123; InterPro 21.1 2.4E+02 0.0052 30.5 6.6 47 152-216 194-242 (299)
No 1
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=3.1e-63 Score=542.56 Aligned_cols=344 Identities=23% Similarity=0.327 Sum_probs=267.6
Q ss_pred ceEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecC-CCccCCCCCCCCCCCCCcccccccccccccccch
Q 004630 279 IREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASS-IDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 357 (741)
Q Consensus 279 k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 357 (741)
|+||+|||||.|+||||||.||++|+++|+++.+|+|+||+|+++ |.|+..... ..+. .
T Consensus 2 ~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~~~~~~----------~~~~--~-------- 61 (364)
T PRK14570 2 KKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWYLLDSV----------PDPP--K-------- 61 (364)
T ss_pred CcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEEecCcc----------cccc--c--------
Confidence 779999999999999999999999999994357999999999998 778642210 0000 0
Q ss_pred HHHHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCCc
Q 004630 358 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 437 (741)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEd 437 (741)
. .........+ . .....+. .......+|+|||++||.+|||
T Consensus 62 --~-------~~~~~~~~~~---------~---~~~~~~~------------------~~~~~~~~D~vf~~lhG~~GEd 102 (364)
T PRK14570 62 --L-------IKRDVLPIVS---------L---IPGCGIF------------------VNNKNLEIDVVFPIVHGRTGED 102 (364)
T ss_pred --c-------cccccccccc---------c---ccccccc------------------ccCcCcCCCEEEEcCCCCCCCc
Confidence 0 0000000000 0 0000000 0001124799999999999999
Q ss_pred hHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 004630 438 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517 (741)
Q Consensus 438 g~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVK 517 (741)
|+||++||++||||+||++.++++||||..+|++ |+++|||||+|..+...++... .++....+...+ +||+|||
T Consensus 103 g~iqglle~~giPy~Gs~~~asal~~DK~~tK~~---l~~~GIpt~p~~~~~~~~~~~~-~~~~~~~~~~~l-g~PviVK 177 (364)
T PRK14570 103 GAIQGFLKVMDIPCVGAGILGSAISINKYFCKLL---LKSFNIPLVPFIGFRKYDYFLD-KEGIKKDIKEVL-GYPVIVK 177 (364)
T ss_pred CHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHcCCCCCCEEEEeccccccc-hHHHHHHHHHhc-CCCEEEE
Confidence 9999999999999999999999999999999999 9999999999998876443211 122233444678 6999999
Q ss_pred cCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhh
Q 004630 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597 (741)
Q Consensus 518 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 597 (741)
|+++|||.||++|++.++|. .+++.++++ +..+|||+||+|+
T Consensus 178 P~~~GsS~Gv~~v~~~~el~---~al~~a~~~-------------------~~~vlVEefI~Gr---------------- 219 (364)
T PRK14570 178 PAVLGSSIGINVAYNENQIE---KCIEEAFKY-------------------DLTVVIEKFIEAR---------------- 219 (364)
T ss_pred eCCCCCCCcEEEeCCHHHHH---HHHHHHHhC-------------------CCCEEEECCcCCE----------------
Confidence 99999999999999999988 477888766 5789999999996
Q ss_pred hhcCCCceeEEEEEEEcCCCCceecCceEEEcc-CCcccccccccc--CCCc-eEEcCCCCCCCCHHHHHHHHHHHHHHH
Q 004630 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKFQ--GGTG-INLTPPPASIMSTEALDKCKQRIELIA 673 (741)
Q Consensus 598 ~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~-~~~~~d~~~ky~--~g~~-~~~~Pa~~~~l~~e~~~~i~~~a~~~~ 673 (741)
|++|+|+++.... .+ +..++.. ...||||++||. .+.+ ...+|++ +++++.++|+++|.+++
T Consensus 220 ---------Ei~v~Vlg~~~~~-v~-~~~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~---l~~e~~~~i~~~A~~~~ 285 (364)
T PRK14570 220 ---------EIECSVIGNEQIK-IF-TPGEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAH---LDTKHLLDIKEYAFLTY 285 (364)
T ss_pred ---------EEEEEEECCCCce-Ee-eeEEEEeCCCCccCHHHhcCCCCCCceEEECCCC---CCHHHHHHHHHHHHHHH
Confidence 9999999875432 22 2334433 346999999995 3443 4567887 79999999999999999
Q ss_pred HHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHhcc
Q 004630 674 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 674 ~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~r~ 740 (741)
++|||+|++|||||++.++|++|||||||+||||++|.+|++|.++| +...+|+++||+.|++||
T Consensus 286 ~aLg~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G--~~~~~li~~li~~a~~r~ 350 (364)
T PRK14570 286 KNLELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDG--LQYKSLVDNLIDLAFQSY 350 (364)
T ss_pred HHhCCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Confidence 99999999999999985458999999999999999999999888875 444799999999999986
No 2
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=100.00 E-value=3.4e-59 Score=509.66 Aligned_cols=338 Identities=24% Similarity=0.351 Sum_probs=262.6
Q ss_pred cCceEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccc
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
|.|+||+|||||.|+||||||.||++|+++|+ +.+|+|+||+|+++|.|+..... ...|....
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~-~~~~~v~~i~i~~~g~~~~~~~~---------~~~~~~~~------- 63 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVKSAIEVARNLD-TEKYEPFYIGITKSGVWKLCDGP---------CAEWENGS------- 63 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhc-ccCCeEEEEEECCCCcEEeCCcc---------cccccccc-------
Confidence 45899999999999999999999999999997 48999999999999888753321 00111000
Q ss_pred hHHHHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCC
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
.... .+.|.. . ..+|.... ... . ....+|+|||++||++||
T Consensus 64 ~~~~------~~~~~~-------------------~----~~~~~~~~--~~~------~--~~~~~d~vf~~lhG~~ge 104 (343)
T PRK14568 64 CRPA------VLSPDR-------------------K----VHGLLVLE--QGE------Y--ETIRLDVVFPVLHGKLGE 104 (343)
T ss_pred ccce------eecccc-------------------c----cccccccC--ccc------c--ccccCCEEEEcCCCCCCC
Confidence 0000 000000 0 00000000 000 0 012479999999999999
Q ss_pred chHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvV 516 (741)
||+||++||.+|+||+||++.++++||||..||++ |+++|||+|+|..+...+.. . ...+ +||+||
T Consensus 105 dg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~--------~--~~~l-~~P~iV 170 (343)
T PRK14568 105 DGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIV---AKNAGIATPAFWTVTADERP--------D--AATL-TYPVFV 170 (343)
T ss_pred chHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHcCcCcCCEEEEECCchh--------h--hhhc-CCCEEE
Confidence 99999999999999999999999999999999998 99999999999988754310 1 2357 699999
Q ss_pred ecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhh
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 596 (741)
||+++|||+||++|++.++|.. +++.++++ +..+|||+||+|+
T Consensus 171 KP~~~gsS~Gv~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~--------------- 213 (343)
T PRK14568 171 KPARSGSSFGVSKVNSADELDY---AIESARQY-------------------DSKVLIEEAVVGS--------------- 213 (343)
T ss_pred EeCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEECCcCCE---------------
Confidence 9999999999999999999884 67777665 5789999999996
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccC----CCceEEcCCCCCCCCHHHHHHHHHHHHHH
Q 004630 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQG----GTGINLTPPPASIMSTEALDKCKQRIELI 672 (741)
Q Consensus 597 ~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~----g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~ 672 (741)
|++|+++++++... ..+..++....+||+|..||.. +.+..++|+. +++++.++|+++|.++
T Consensus 214 ----------E~sv~vl~~~~~~~-~~~~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~---l~~~~~~~i~~~a~~~ 279 (343)
T PRK14568 214 ----------EVGCAVLGNGADLV-VGEVDQIRLSHGFFRIHQENEPEKGSENSTIIVPAD---ISAEERSRVQETAKAI 279 (343)
T ss_pred ----------EEEEEEEcCCCCcc-eecceEEecCCCccchhhhhccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHH
Confidence 99999998654322 1222234445579999988852 2345678887 6899999999999999
Q ss_pred HHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 004630 673 ANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 673 ~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~ 738 (741)
+++|||+|++|||||++. +|++||+||||+||||++|.+|++++++| +...+|+++||++|++
T Consensus 280 ~~~Lg~~G~~rvDf~l~~-~g~~~llEINt~Pg~t~~S~~p~~~~~~G--~~~~~l~~~li~~a~~ 342 (343)
T PRK14568 280 YRALGCRGLARVDMFLQE-DGTVVLNEVNTLPGFTSYSRYPRMMAAAG--IPLAELIDRLVSLALT 342 (343)
T ss_pred HHHhCCCcEEEEEEEEeC-CCCEEEEEeeCCCCCCccCHHHHHHHHcC--CCHHHHHHHHHHHHhc
Confidence 999999999999999995 68999999999999999999988887765 3346999999999985
No 3
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=100.00 E-value=4e-58 Score=499.18 Aligned_cols=333 Identities=27% Similarity=0.366 Sum_probs=266.5
Q ss_pred cCceEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccc
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
|.|+||+|||||.|+||||||.||++|+++|++ .+|+|++|+|+++|.|...... ...+. . .
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~~g~~~~~~~~---------~~~~~--~------~ 62 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITKDGRWYLIDAD---------NMELA--D------D 62 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECCCCCEeeccch---------hhhcc--c------c
Confidence 468999999999999999999999999999974 8999999999998777642110 00000 0 0
Q ss_pred hHHHHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCC
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
...+. .+.. .. . . . . ....+|+|||++||.+||
T Consensus 63 ----------~~~~~-----------------------~~~~--~~-~--~-~----~----~~~~~D~vf~~lhG~~ge 95 (333)
T PRK01966 63 ----------DNDKE-----------------------DLSL--LI-L--P-S----G----GSEEVDVVFPVLHGPPGE 95 (333)
T ss_pred ----------ccccc-----------------------ccch--hc-c--c-c----c----cCccCCEEEEccCCCCCC
Confidence 00000 0000 00 0 0 0 0 001479999999999999
Q ss_pred chHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvV 516 (741)
||++|++||.+||||+||++.++++||||..||++ |+++|||+|++..+...++. ...+..+.+.+ +||+||
T Consensus 96 dg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~----~~~~~~~~~~~-~~P~vV 167 (333)
T PRK01966 96 DGTIQGLLELLGIPYVGCGVLASALSMDKILTKRL---LAAAGIPVAPYVVLTRGDWE----EASLAEIEAKL-GLPVFV 167 (333)
T ss_pred CcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEEeccccc----hhhHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999999 99999999999998765421 01234455678 699999
Q ss_pred ecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhh
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 596 (741)
||+++|||+||++|++.++|. ++++.++++ +..+|||+||+|+
T Consensus 168 KP~~~gsS~Gv~~v~~~~el~---~a~~~~~~~-------------------~~~vlvEefI~G~--------------- 210 (333)
T PRK01966 168 KPANLGSSVGISKVKNEEELA---AALDLAFEY-------------------DRKVLVEQGIKGR--------------- 210 (333)
T ss_pred EeCCCCCccCEEEECCHHHHH---HHHHHHHhc-------------------CCcEEEEcCcCCE---------------
Confidence 999999999999999999988 467777765 5789999999996
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004630 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 597 ~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
|++|+++++++. + .+..++....+||+|++||..+.+...+|++ +++++.++++++|.+++++|
T Consensus 211 ----------E~~v~vl~~~~~-~--~~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~aL 274 (333)
T PRK01966 211 ----------EIECAVLGNDPK-A--SVPGEIVKPDDFYDYEAKYLDGSAELIIPAD---LSEELTEKIRELAIKAFKAL 274 (333)
T ss_pred ----------EEEEEEECCCCe-E--cccEEEecCCceEcHHHccCCCCceEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 999999987322 2 2223444445799999999877777788987 68999999999999999999
Q ss_pred CCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 004630 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 677 g~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~ 738 (741)
||+|++||||+++. +|++||+||||+||||++|.+|++|++++ +...+++++||+.|++
T Consensus 275 g~~G~~rvDf~~~~-~g~~~vlEiNt~Pg~t~~s~~p~~~~~~G--~~~~~l~~~ii~~a~~ 333 (333)
T PRK01966 275 GCSGLARVDFFLTE-DGEIYLNEINTMPGFTPISMYPKLWEASG--LSYPELIDRLIELALE 333 (333)
T ss_pred CCcceEEEEEEEcC-CCCEEEEEeeCCCCCCcccHHHHHHHHcC--CCHHHHHHHHHHHHhC
Confidence 99999999999985 68999999999999999998888888775 4447999999999873
No 4
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=6.1e-58 Score=500.28 Aligned_cols=343 Identities=24% Similarity=0.389 Sum_probs=265.5
Q ss_pred eEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHH
Q 004630 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359 (741)
Q Consensus 280 ~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 359 (741)
+||+|||||.|+||||||.||++|+++|++ .+|+|.|++++++|.|...... ...|..... .....
T Consensus 2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~v~~i~~~~~~~~~~~~~~---------~~~~~~~~~----~~~~~ 67 (347)
T PRK14572 2 AKIAVFFGGSSTEHSISIRTGCFICATLHT-MGHSVKPILLTPDGGWVVPTVY---------RPSIPDESG----NSEDL 67 (347)
T ss_pred cEEEEEECCCCcchHHHHHhHHHHHHHHhh-cCCEEEEEEECCCCCEeecccc---------ccccccccc----ccccc
Confidence 589999999999999999999999999974 8999999999998777642110 000100000 00000
Q ss_pred HHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCCchH
Q 004630 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 439 (741)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEdg~ 439 (741)
.. . .+....-... +.......+|+||+++||++||||+
T Consensus 68 ~~-----------------------~----~~~~~~~~~~---------------~~~~~~~~~d~~f~~~hg~~gEdg~ 105 (347)
T PRK14572 68 FL-----------------------E----EFQKANGVSE---------------PADISQLDADIAFLGLHGGAGEDGR 105 (347)
T ss_pred cc-----------------------c----cccccccccc---------------cccccccCcCEEEEecCCCCCCCcH
Confidence 00 0 0000000000 0000112479999999999999999
Q ss_pred HHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 004630 440 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519 (741)
Q Consensus 440 iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~ 519 (741)
||++||.+||||+||++.++++||||..||++ |+++|||||+++.+...++... .++.+. ..+++ +||+||||+
T Consensus 106 iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~---l~~~GI~~p~~~~~~~~~~~~~-~~~~~~-~~~~l-~~PvvVKP~ 179 (347)
T PRK14572 106 IQGFLDTLGIPYTGSGVLASALAMDKTRANQI---FLQSGQKVAPFFELEKLKYLNS-PRKTLL-KLESL-GFPQFLKPV 179 (347)
T ss_pred HHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHH---HHHcCCCCCCEEEEEccccccC-hHHHHH-HHHhc-CCCEEEecC
Confidence 99999999999999999999999999999999 9999999999999876554321 112222 23568 699999999
Q ss_pred CCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhh
Q 004630 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599 (741)
Q Consensus 520 ~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~ 599 (741)
++|||+||++|++.++|.. +++.++++ ++.+|||+||+|+
T Consensus 180 ~ggsS~GV~~v~~~~el~~---a~~~~~~~-------------------~~~vlVEefI~G~------------------ 219 (347)
T PRK14572 180 EGGSSVSTYKITNAEQLMT---LLALIFES-------------------DSKVMSQSFLSGT------------------ 219 (347)
T ss_pred CCCCCCCEEEECCHHHHHH---HHHHHHhc-------------------CCCEEEEcCcccE------------------
Confidence 9999999999999999884 66666654 5789999999996
Q ss_pred cCCCceeEEEEEEEcCC--CCc-eecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004630 600 KGNSRWVEITVGVIGKC--GSM-HSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 600 ~g~~~~~Eisv~vl~~~--~~~-~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
|++|+++++. +.. ....+..++...+++|+|++||..+....++|++ +++++.++++++|.+++++|
T Consensus 220 -------E~sv~vi~~~~~g~~~~~~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~~L 289 (347)
T PRK14572 220 -------EVSCGVLERYRGGKRNPIALPATEIVPGGEFFDFESKYKQGGSEEITPAR---ISDQEMKRVQELAIRAHESL 289 (347)
T ss_pred -------EEEEEEEeCccCCCCCceecccEEEecCCCccCHHHccCCCCeEEEECCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999742 221 1123334566667899999999987777788987 68999999999999999999
Q ss_pred CCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 004630 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 677 g~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~ 738 (741)
||+|++|||||++ +|++||+||||+||||++|.+|++|.++| +.+.+|+++||+.|++
T Consensus 290 g~~G~~rvD~~~~--~~~~~vlEiNt~PG~t~~S~~p~~~~~~G--~~~~~l~~~ii~~a~~ 347 (347)
T PRK14572 290 GCKGYSRTDFIIV--DGEPHILETNTLPGMTETSLIPQQAKAAG--INMEEVFTDLIEIGLK 347 (347)
T ss_pred CCcceeEEEEEEE--CCcEEEEeeeCCCCCCcccHHHHHHHHcC--CCHHHHHHHHHHHHhC
Confidence 9999999999997 47899999999999999999999988875 5557999999999974
No 5
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=8.8e-57 Score=540.77 Aligned_cols=341 Identities=24% Similarity=0.295 Sum_probs=269.4
Q ss_pred cccCceEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccc
Q 004630 275 KREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLR 354 (741)
Q Consensus 275 ~~~~k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 354 (741)
.++.|+||+|||||.|+||||||.||++|+++|++ .+|+|++|+|+++|.|...... ..|.
T Consensus 447 ~~~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~-~~~~v~~~~i~~~g~~~~~~~~----------~~~~-------- 507 (809)
T PRK14573 447 FEPKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSP-EFYDVSYFLINRQGLWETVSSL----------ETAI-------- 507 (809)
T ss_pred cCCCCcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCcEEEEEEECCCCeEEecccc----------cccc--------
Confidence 34678999999999999999999999999999974 8999999999997655431100 0000
Q ss_pred cchHHHHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCC
Q 004630 355 HTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGI 434 (741)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~ 434 (741)
+. .+. ...+ . .+.. .....+|+|||++||++
T Consensus 508 ---~~---------~~~-------------------------~~~~---~--------~~~~-~~~~~~d~vf~~lhG~~ 538 (809)
T PRK14573 508 ---EE---------DSG-------------------------KSVL---S--------SEIA-QALAKVDVVLPILHGPF 538 (809)
T ss_pred ---cc---------ccc-------------------------cccc---c--------hhhh-hccccCCEEEEcCCCCC
Confidence 00 000 0000 0 0000 00134799999999999
Q ss_pred CCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE
Q 004630 435 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514 (741)
Q Consensus 435 GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~Pv 514 (741)
||||+||++||.+||||+||++.++++||||..+|++ |+++|||||+|..+...++... .+..+.++.+++ +||+
T Consensus 539 gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~---l~~~GIpt~~~~~~~~~~~~~~-~~~~~~~~~~~l-g~P~ 613 (809)
T PRK14573 539 GEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRF---ASDVGVPVVPYQPLTLAGWKRE-PELCLAHIVEAF-SFPM 613 (809)
T ss_pred CCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHH---HHHCCCCCCCEEEEechhcccC-hHHHHHHHHHhc-CCCE
Confidence 9999999999999999999999999999999999999 9999999999999876544321 122234456788 6999
Q ss_pred EEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccch
Q 004630 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594 (741)
Q Consensus 515 vVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~ 594 (741)
||||+++|||+||++|++.+||. ++++.++.+ ++.+|||+||.|.
T Consensus 614 iVKP~~~GsS~Gv~~v~~~~el~---~a~~~a~~~-------------------~~~vlVEe~i~~g------------- 658 (809)
T PRK14573 614 FVKTAHLGSSIGVFEVHNVEELR---DKISEAFLY-------------------DTDVFVEESRLGS------------- 658 (809)
T ss_pred EEeeCCCCCCCCEEEECCHHHHH---HHHHHHHhc-------------------CCcEEEEeccCCC-------------
Confidence 99999999999999999999998 477777765 5789999998762
Q ss_pred hhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCcccccccccc-CCC--ceEEcCCCCCCCCHHHHHHHHHHHHH
Q 004630 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ-GGT--GINLTPPPASIMSTEALDKCKQRIEL 671 (741)
Q Consensus 595 ~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~-~g~--~~~~~Pa~~~~l~~e~~~~i~~~a~~ 671 (741)
+|++|+|+++......+.+..++....+||+|++||. .+. ....+|++ +++++.++|+++|.+
T Consensus 659 -----------rEi~v~vl~~~~~~~~~~~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~---l~~~~~~~i~~~a~~ 724 (809)
T PRK14573 659 -----------REIEVSCLGDGSSAYVIAGPHERRGSGGFIDYQEKYGLSGKSSAQIVFDLD---LSKESQEQVLELAER 724 (809)
T ss_pred -----------EEEEEEEEeCCCCceEeccceEEccCCCeeCchhcccCCCCCceEEecCCC---CCHHHHHHHHHHHHH
Confidence 4999999997654322333345555567999999995 333 23346776 799999999999999
Q ss_pred HHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHhcc
Q 004630 672 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 672 ~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~r~ 740 (741)
++++|||+|++|||||++. +|++|||||||+||||++|.+|++|.++| +...+|+++||+.|++||
T Consensus 725 ~~~aLg~~G~~riDf~v~~-~g~~yv~EiNt~PG~t~~s~~p~~~~~~G--~~~~~li~~ii~~a~~r~ 790 (809)
T PRK14573 725 IYRLLQGKGSCRIDFFLDE-EGNFWLSEMNPIPGMTEASPFLTAFVRKG--WTYEQIVHQLIIDGLHKF 790 (809)
T ss_pred HHHHhCCceEEEEEEEEcC-CCCEEEEEeeCCCCCCcccHHHHHHHHcC--CCHHHHHHHHHHHHHHHh
Confidence 9999999999999999985 68999999999999999999998887774 444799999999999986
No 6
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=5.7e-54 Score=459.25 Aligned_cols=295 Identities=23% Similarity=0.341 Sum_probs=245.4
Q ss_pred cCceEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccc
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
|+|+||+|||||.|+||+||+.||++|+++|++ .+|+|+++.++. .|.+
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~~---------------------~~~~--------- 49 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDASG---------------------KELV--------- 49 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCCc---------------------hhHH---------
Confidence 468999999999999999999999999999975 899998764321 1100
Q ss_pred hHHHHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCC
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
. . + ....+|+||+++||.+||
T Consensus 50 -~------------~-------------------l---------------------------~~~~~d~vf~~lhG~~ge 70 (296)
T PRK14569 50 -A------------K-------------------L---------------------------LELKPDKCFVALHGEDGE 70 (296)
T ss_pred -H------------H-------------------h---------------------------hccCCCEEEEeCCCCCCC
Confidence 0 0 0 011369999999999999
Q ss_pred chHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvV 516 (741)
||++|++||.+||||+||++.++++||||..||++ |+++|||||++..+.... ...+.+ +||+||
T Consensus 71 ~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~---l~~~gIptp~~~~~~~~~-----------~~~~~~-~~P~vV 135 (296)
T PRK14569 71 NGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEI---LMHHRMPTPMAKFLTDKL-----------VAEDEI-SFPVAV 135 (296)
T ss_pred ChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCeEEEchhh-----------hhHhhc-CCCEEE
Confidence 99999999999999999999999999999999998 999999999998775311 113567 699999
Q ss_pred ecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhh
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 596 (741)
||+++|||+||++|++.++|.. +++.++.+ +.+|||+||+|+
T Consensus 136 KP~~ggss~Gv~~v~~~~eL~~---a~~~~~~~--------------------~~~lvEefI~G~--------------- 177 (296)
T PRK14569 136 KPSSGGSSIATFKVKSIQELKH---AYEEASKY--------------------GEVMIEQWVTGK--------------- 177 (296)
T ss_pred EeCCCCCCcCeEEcCCHHHHHH---HHHHHHhc--------------------CCEEEEcccccE---------------
Confidence 9999999999999999999884 66665543 479999999996
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004630 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 597 ~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
|++|+++++. ..+.+++.+...+|+|++||.+ .+.+.+|+. ++++..++++++|.+++++|
T Consensus 178 ----------E~tv~vl~~~-----~~~~~~i~~~~~~~~~~~k~~~-~~~~~~P~~---l~~~~~~~i~~~a~~~~~~L 238 (296)
T PRK14569 178 ----------EITVAIVNDE-----VYSSVWIEPQNEFYDYESKYSG-KSIYHSPSG---LCEQKELEVRQLAKKAYDLL 238 (296)
T ss_pred ----------EEEEEEECCc-----CcceEEEecCCCcCChhhccCC-CcEEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999754 1233444455678999999964 456678877 68889999999999999999
Q ss_pred CCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004630 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 736 (741)
Q Consensus 677 g~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a 736 (741)
||+|++||||+++. +|++||+||||+||||+.|.++.+|.++| +...+|+.+||+.|
T Consensus 239 g~~G~~rvD~~~~~-~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G--~~~~~li~~ii~~a 295 (296)
T PRK14569 239 GCSGHARVDFIYDD-RGNFYIMEINSSPGMTDNSLSPKSAAAEG--VDFDSFVKRIIEQA 295 (296)
T ss_pred CCceEEEEEEEEcC-CCCEEEEEeeCCCCCCCcCHHHHHHHHcC--CCHHHHHHHHHHhc
Confidence 99999999999985 68999999999999999998888887775 44479999999876
No 7
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.5e-54 Score=457.70 Aligned_cols=314 Identities=30% Similarity=0.405 Sum_probs=267.0
Q ss_pred CceEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccch
Q 004630 278 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 357 (741)
Q Consensus 278 ~k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 357 (741)
++++|+|+|||.|+||+||+.||.+|+++|+. .+|++.++.+++++.|.. ...
T Consensus 1 ~~~~vavl~gG~s~e~eVsl~sa~~v~~~l~~-~~~~~~~~~~~~~~~~~~-------------------~~~------- 53 (317)
T COG1181 1 GKMKVAVLLGGRSAEREVSLLSAKAVLRALKG-FGYDVTPVDITEAGLWML-------------------DKE------- 53 (317)
T ss_pred CceEEEEeeCCccccceEEEecHHHHHHHHhh-cCceeEEEeccccceEEe-------------------ccc-------
Confidence 47899999999999999999999999999975 899999999988644322 100
Q ss_pred HHHHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCCc
Q 004630 358 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 437 (741)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEd 437 (741)
.+. .....+|++||++||.+|||
T Consensus 54 -----------~~~----------------------------------------------~~~~~~~vvfp~lhG~~gED 76 (317)
T COG1181 54 -----------VTK----------------------------------------------RVLQKADVVFPVLHGPYGED 76 (317)
T ss_pred -----------cch----------------------------------------------hhcccCCEEEEeCCCCCCCC
Confidence 000 01123689999999999999
Q ss_pred hHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEe
Q 004630 438 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517 (741)
Q Consensus 438 g~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVK 517 (741)
|++|++||.+|+||||+++.+|+.+|||..+|.+ ++..|+|++++..+...++. ...+++....+ +||+|||
T Consensus 77 g~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~---~~~~g~~~a~~~~~~~~~~~----~~~~e~~~~~l-~~p~~Vk 148 (317)
T COG1181 77 GTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRL---FKAEGLPVAPYVALTRDEYS----SVIVEEVEEGL-GFPLFVK 148 (317)
T ss_pred chHHHHHHHhCCCEecCchhhhhhcccHHHHHHH---HHHCCCCccceeeeecccch----hHHHHHhhccc-CCCEEEE
Confidence 9999999999999999999999999999999998 89999999999999876541 23345666788 7999999
Q ss_pred cCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhh
Q 004630 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597 (741)
Q Consensus 518 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 597 (741)
|++.|||+|++++++..|+.. +++.++++ +..+++|+|+.|+
T Consensus 149 p~~~gSSvg~~~v~~~~d~~~---~~e~a~~~-------------------d~~vl~e~~~~~r---------------- 190 (317)
T COG1181 149 PAREGSSVGRSPVNVEGDLQS---ALELAFKY-------------------DRDVLREQGITGR---------------- 190 (317)
T ss_pred cCCccceeeEEEeeeccchHH---HHHHHHHh-------------------CCceeeccCCCcc----------------
Confidence 999999999999999999985 77888877 7899999999986
Q ss_pred hhcCCCceeEEEEEEEcCCCCceecCceEEEccC-CccccccccccC-CCceEEcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 004630 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQG-GTGINLTPPPASIMSTEALDKCKQRIELIANA 675 (741)
Q Consensus 598 ~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~-~~~~d~~~ky~~-g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~a 675 (741)
|++|+++++......+ +..++... ..||||++||.. +.+.+.+|++ +++++.++++++|.+++++
T Consensus 191 ---------ei~v~vl~~~~~~~~l-~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~---lt~~~~~~i~~lA~~a~~a 257 (317)
T COG1181 191 ---------EIEVGVLGNDYEEQAL-PLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAG---LTDEIHEEIKELALRAYKA 257 (317)
T ss_pred ---------eEEEEecCCcccceec-CceEEecCCCeEEeeeccccCCCCceeeCCCC---CCHHHHHHHHHHHHHHHHh
Confidence 9999999986633333 33455544 689999999998 6678888887 6999999999999999999
Q ss_pred cCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004630 676 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 736 (741)
Q Consensus 676 Lg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a 736 (741)
|||.|++|+|||+++++|++|+|||||+||||++|++|+++++++. .| .+|+.++++.|
T Consensus 258 lg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi-~~-~~L~~~~~e~a 316 (317)
T COG1181 258 LGCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGI-SF-AILVLRFVELA 316 (317)
T ss_pred cCCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhhHHHcCC-CH-HHHHHHHHhhc
Confidence 9999999999999953589999999999999999999988888864 33 68999998876
No 8
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=5.3e-51 Score=437.48 Aligned_cols=298 Identities=27% Similarity=0.356 Sum_probs=249.3
Q ss_pred eEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHH
Q 004630 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359 (741)
Q Consensus 280 ~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 359 (741)
|||+|||||.|+||||||.||++|.++|++ .+|++.++.++++ |. .
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~~---------------------~~-----------~- 46 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDED---------------------FL-----------K- 46 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCch---------------------HH-----------H-
Confidence 689999999999999999999999999975 7999998855321 10 0
Q ss_pred HHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCCchH
Q 004630 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 439 (741)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEdg~ 439 (741)
. +. ....+|+||+++||.+||||.
T Consensus 47 -----------~-------------------~~--------------------------~~~~~D~v~~~~~g~~ge~~~ 70 (299)
T PRK14571 47 -----------K-------------------VD--------------------------QLKSFDVVFNVLHGTFGEDGT 70 (299)
T ss_pred -----------H-------------------hh--------------------------hccCCCEEEEeCCCCCCCccH
Confidence 0 00 001369999999999999999
Q ss_pred HHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 004630 440 LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519 (741)
Q Consensus 440 iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~ 519 (741)
+|++||.+|+||+|+++.++++|+||..||++ |+ +|||+|++..+.... ....+ +||+||||+
T Consensus 71 ~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~---l~-~~ip~p~~~~~~~~~------------~~~~l-~~P~vvKP~ 133 (299)
T PRK14571 71 LQAILDFLGIRYTGSDAFSSMICFDKLLTYRF---LK-GTVEIPDFVEIKEFM------------KTSPL-GYPCVVKPR 133 (299)
T ss_pred HHHHHHHcCCCccCCCHHHHHHHcCHHHHHHH---Hh-cCCCCCCEEEEechh------------hhhhc-CCCEEEecC
Confidence 99999999999999999999999999999998 77 689999998874311 12457 699999999
Q ss_pred CCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhh
Q 004630 520 RDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMW 599 (741)
Q Consensus 520 ~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~ 599 (741)
.++||.||.+|++.++|.+ +++.++.. ...+||||||+|+
T Consensus 134 ~g~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~vlVEeyI~G~------------------ 173 (299)
T PRK14571 134 REGSSIGVFICESDEEFQH---ALKEDLPR-------------------YGSVIVQEYIPGR------------------ 173 (299)
T ss_pred CCCCcCCEEEECCHHHHHH---HHHHHHhh-------------------CCcEEEEccccce------------------
Confidence 9999999999999999884 55555443 3579999999996
Q ss_pred cCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 004630 600 KGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLE 679 (741)
Q Consensus 600 ~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~ 679 (741)
|++|+++++++.... .|..++.....+|+|+.||..+.+...+|++ +++++.++|++++.+++++|||+
T Consensus 174 -------E~sv~vl~~~~~~~v-l~~~e~~~~~~~~~~~~k~~~g~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg~~ 242 (299)
T PRK14571 174 -------EMTVSILETEKGFEV-LPILELRPKRRFYDYVAKYTKGETEFILPAP---LNPEEERLVKETALKAFVEAGCR 242 (299)
T ss_pred -------EEEEEEEcCCCCeee-eceEEEecCCCccccccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHhCCC
Confidence 999999998655433 3444555556789999999887777778886 68999999999999999999999
Q ss_pred ceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 004630 680 GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739 (741)
Q Consensus 680 G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~r 739 (741)
|++||||+++ +|++||+||||+||||+.|.++.+|.++| +...+|+++||+.|+.|
T Consensus 243 g~~rvD~~~~--~~~~~viEiN~~Pg~~~~s~~~~~~~~~G--~~~~~li~~ii~~a~~~ 298 (299)
T PRK14571 243 GFGRVDGIFS--DGRFYFLEINTVPGLTELSDLPASAKAGG--IEFEELVDIIIKSAFLK 298 (299)
T ss_pred ceEEEEEEEE--CCcEEEEEeeCCCCCCccCHHHHHHHHcC--CCHHHHHHHHHHHHHhc
Confidence 9999999997 47899999999999999999998887775 44479999999999976
No 9
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=100.00 E-value=2.1e-46 Score=404.75 Aligned_cols=312 Identities=30% Similarity=0.483 Sum_probs=249.2
Q ss_pred EEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHHH
Q 004630 281 EVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEV 360 (741)
Q Consensus 281 ~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 360 (741)
||+|||||.|+||++|+.||..++++|++ .+|+++++.+++.+.|.. . +.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~-~g~~v~~i~~~~~~~~~~-------------------~----------~~ 50 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRD-LGYDVYPVDIDKMGSWTY-------------------K----------DL 50 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhh-cCCEEEEEeecCCccccc-------------------c----------ch
Confidence 69999999999999999999999999975 799999999877532211 0 00
Q ss_pred HHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCCchHH
Q 004630 361 LAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTL 440 (741)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEdg~i 440 (741)
.+.. .. . . . ....+|+|||++||..|||+.+
T Consensus 51 ~~~~---------------------------~~---~-~----~--------------~~~~~D~v~~~~~g~~~~~~~~ 81 (315)
T TIGR01205 51 PQLI---------------------------LE---L-G----A--------------LLEGIDVVFPVLHGRYGEDGTI 81 (315)
T ss_pred HHHH---------------------------hh---c-c----c--------------cCCCCCEEEEecCCCCCCCcHH
Confidence 0000 00 0 0 0 0124699999999999999999
Q ss_pred HHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEe-CccccCCchhhH-HHHHHhhcCCCcEEEec
Q 004630 441 QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR-KEDLLKTPIVDI-WHELTSKLQCKTLCVKP 518 (741)
Q Consensus 441 q~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~-~~e~~~~~~~~~-~~~~~~~lg~~PvvVKP 518 (741)
|++||.+|+||+|+++.++++|+||..|+++ |+++|||+|++..+. ..+.. .+. ...+...+ +||+||||
T Consensus 82 ~~~le~~gip~~g~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~~~~----~~~~~~~~~~~~-~~P~vvKP 153 (315)
T TIGR01205 82 QGLLELMGIPYTGSGVLASALSMDKLLTKLL---WKALGLPTPDYIVLTQNRASA----DELECEQVAEPL-GFPVIVKP 153 (315)
T ss_pred HHHHHHcCCCccCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEecccccc----hhhhHHHHHHhc-CCCEEEEe
Confidence 9999999999999999999999999999998 999999999999887 32210 111 12334578 69999999
Q ss_pred CCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhh
Q 004630 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598 (741)
Q Consensus 519 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 598 (741)
..+++|.||.++++.+++.. +++.++.+ +..+|||+||+|+
T Consensus 154 ~~~~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvEe~i~G~----------------- 194 (315)
T TIGR01205 154 AREGSSVGVSKVKSEEELQA---ALDEAFEY-------------------DEEVLVEQFIKGR----------------- 194 (315)
T ss_pred CCCCCccCEEEECCHHHHHH---HHHHHHhc-------------------CCcEEEEcCCCCE-----------------
Confidence 99999999999999999884 55555544 4689999999996
Q ss_pred hcCCCceeEEEEEEEcCCCCceecCceEEEccCC-ccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcC
Q 004630 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESG-DILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQ 677 (741)
Q Consensus 599 ~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~-~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg 677 (741)
|++|.++++++.. +.+.+.... .+|+|..||..+.+...+|++ +++++.++|++++.+++++||
T Consensus 195 --------e~~v~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---l~~~~~~~i~~~a~~~~~~lg 259 (315)
T TIGR01205 195 --------ELEVSILGNEEAL----PIIEIVPEIEGFYDYEAKYLDGSTEYVIPAP---LDEELEEKIKELALKAYKALG 259 (315)
T ss_pred --------EEEEEEECCCCcc----ceEEecCCCCCeeCcccccCCCCeeEEeCCC---CCHHHHHHHHHHHHHHHHHhC
Confidence 9999999864321 122222222 278999999877666678876 689999999999999999999
Q ss_pred CcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004630 678 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLG 736 (741)
Q Consensus 678 ~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a 736 (741)
++|++||||++++ +|++||+|||++|||++.|.++.++.++| +...+++..||+.|
T Consensus 260 ~~G~~~vD~~~~~-~g~~~viEvN~~pg~~~~s~~~~~~~~~G--~~~~~l~~~ii~~~ 315 (315)
T TIGR01205 260 CRGLARVDFFLDE-EGEIYLNEINTIPGMTAISLFPKAAAAAG--IEFSQLVERILELA 315 (315)
T ss_pred CCceEEEEEEEeC-CCCEEEEEeeCCCCCCCccHHHHHHHHcC--CCHHHHHHHHHhcC
Confidence 9999999999995 57999999999999999999998888875 44479999999864
No 10
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=100.00 E-value=8.6e-44 Score=382.53 Aligned_cols=302 Identities=30% Similarity=0.453 Sum_probs=252.1
Q ss_pred cCceEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccc
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
+.++||+|+|||.|+||++|+.|++.++++|.+ .+|++++|..+.. .+
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~~--------------------~~----------- 49 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGED--------------------IA----------- 49 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCcc--------------------hH-----------
Confidence 456799999999999999999999999999975 7999987743210 00
Q ss_pred hHHHHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCC
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
+ . + ....+|+||+.+||.+|+
T Consensus 50 --~-------~------------------------------------------------~--~~~~~D~v~~~~~g~~~~ 70 (304)
T PRK01372 50 --A-------Q------------------------------------------------L--KELGFDRVFNALHGRGGE 70 (304)
T ss_pred --H-------H------------------------------------------------h--ccCCCCEEEEecCCCCCC
Confidence 0 0 0 012369999999999999
Q ss_pred chHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEE
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvV 516 (741)
++.+|++||.+|+||+|++..++++|+||..+|++ |+++|||+|++..+...+. +....+++ +||+||
T Consensus 71 ~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~~--------~~~~~~~~-~~P~iv 138 (304)
T PRK01372 71 DGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLV---WQAAGLPTPPWIVLTREED--------LLAAIDKL-GLPLVV 138 (304)
T ss_pred ccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHH---HHHCCCCCCCEEEEeCcch--------HHHHHhhc-CCCEEE
Confidence 99999999999999999999999999999999998 9999999999999876541 23345678 699999
Q ss_pred ecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhh
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 596 (741)
||..+++|.||.++++.+++.+ +++....+ ...+|||+||+|+
T Consensus 139 KP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~-------------------~~~~lvEe~i~G~--------------- 181 (304)
T PRK01372 139 KPAREGSSVGVSKVKEEDELQA---ALELAFKY-------------------DDEVLVEKYIKGR--------------- 181 (304)
T ss_pred eeCCCCCCCCEEEeCCHHHHHH---HHHHHHhc-------------------CCcEEEEcccCCE---------------
Confidence 9999999999999999998875 44444333 4689999999996
Q ss_pred hhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004630 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 597 ~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
|++|.++++. ..+.+++....++++|+.||..+.....+|+. ++++..+++++++.+++++|
T Consensus 182 ----------E~~v~vi~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~---~~~~~~~~l~~~a~~~~~~l 243 (304)
T PRK01372 182 ----------ELTVAVLGGK-----ALPVIEIVPAGEFYDYEAKYLAGGTQYICPAG---LPAEIEAELQELALKAYRAL 243 (304)
T ss_pred ----------EEEEEEECCC-----ccceEEEEecCCEEeeeccccCCCeEEEeCCC---CCHHHHHHHHHHHHHHHHHh
Confidence 9999999764 23334444456688999999877767777765 68999999999999999999
Q ss_pred CCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 004630 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739 (741)
Q Consensus 677 g~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~r 739 (741)
|++|++|+||+++. +|++||+|||++|||++.|.++.++..++. .| .+++..||+.|+.|
T Consensus 244 g~~g~~~iD~~~~~-~g~~~viEvN~~p~~~~~~~~~~~~~~~g~-~~-~~~~~~ii~~a~~~ 303 (304)
T PRK01372 244 GCRGWGRVDFMLDE-DGKPYLLEVNTQPGMTSHSLVPMAARAAGI-SF-SELVDRILEDALCD 303 (304)
T ss_pred CCcceEEEEEEEcC-CCCEEEEEecCCCCCCcccHHHHHHHHcCC-CH-HHHHHHHHHHHhhc
Confidence 99999999999995 599999999999999999988888888743 34 69999999999976
No 11
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=1.5e-40 Score=406.17 Aligned_cols=527 Identities=16% Similarity=0.169 Sum_probs=343.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|++..+.+.+ ++.++++.+| .||+||||..+++|.|+.+|+|.+|+..++.+.+..++++.+||
T Consensus 152 l~~~GIpvp~~~~v~s~e----ea~~~~~~iG----~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLV 223 (1102)
T PLN02735 152 MEKIGLKTPPSGIATTLD----ECFEIAEDIG----EFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLV 223 (1102)
T ss_pred HHHCCCCCCCeeEeCCHH----HHHHHHHHhC----CCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEE
Confidence 467999999999887654 5555655443 16999999999999999999999998888777665567789999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~~~i~ 159 (741)
|+||.|.+||+|.++++.+++ .+.+.+.+. +++.. ++.+. .....|+ .++++..++|+
T Consensus 224 Ee~I~G~kE~ev~Vl~D~~g~---~i~v~~ie~----------------~dp~g-vh~G~-s~~vaPa~tL~~~~~q~l~ 282 (1102)
T PLN02735 224 EKSLLGWKEYELEVMRDLADN---VVIICSIEN----------------IDPMG-VHTGD-SITVAPAQTLTDKEYQRLR 282 (1102)
T ss_pred EEecCCCeEEEEEEEEcCCCC---EEEEeeEEE----------------EcCCc-cccCC-EEEEEeCCCCCHHHHHHHH
Confidence 999997689999999864332 222222221 11111 22232 4456787 58999999999
Q ss_pred HHHHHHHHHhCC-CCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHH
Q 004630 160 EGASLLFQRLGL-CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238 (741)
Q Consensus 160 ~~a~~~~~aLg~-~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ 238 (741)
++|.+++++||+ .|+++|||+++ ..+|++||+|||||++ +++.+ ..+++|+++.++..+
T Consensus 283 ~~A~ki~~aLgi~~G~~nVqf~l~----------------~~~g~~~ViEVNPR~s--~ss~l--~s~atG~~~a~~~~k 342 (1102)
T PLN02735 283 DYSVAIIREIGVECGGSNVQFAVN----------------PVDGEVMIIEMNPRVS--RSSAL--ASKATGFPIAKMAAK 342 (1102)
T ss_pred HHHHHHHHHhCCCcCceEEEEEEE----------------CCCCcEEEEEecCCCC--Ccchh--hhhhhCCCHHHHHHH
Confidence 999999999999 59999999983 1478999999999887 33322 223345554443322
Q ss_pred HH-HHHHh--------------------------hC-----C--------------------------------------
Q 004630 239 II-GHACS--------------------------RF-----P-------------------------------------- 248 (741)
Q Consensus 239 ii-~~a~~--------------------------r~-----~-------------------------------------- 248 (741)
+. ...+. || +
T Consensus 343 lalG~~l~~~~~~~~~~~~a~~ep~~d~~~~k~p~~~f~~f~~~~~~l~~~mks~ge~m~~gr~~~ea~~ka~~~~~~~~ 422 (1102)
T PLN02735 343 LSVGYTLDQIPNDITLKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMALGRTFQESFQKALRSLETGF 422 (1102)
T ss_pred HHCCCChhhhccccccccchheeecCCcEEEEcccCCcccccCCCcccceeeeecceEEEecCCHHHHHHHHHHHhcCCC
Confidence 20 00000 00 0
Q ss_pred ---------C-----------CCCCCCc-----------cccC-----------------------C-------------
Q 004630 249 ---------N-----------LASYNSV-----------SSHL-----------------------P------------- 261 (741)
Q Consensus 249 ---------~-----------~~~~~~~-----------~~~~-----------------------~------------- 261 (741)
. +..++.. ++++ .
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~id~~f~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1102)
T PLN02735 423 SGWGCAKVKELDWDWEQLKYKLRVPNPDRIHAIYAAMKKGMTVDEIHELTFIDPWFLTQLKELVDVEQFLKSRSLSELSK 502 (1102)
T ss_pred CCCCccccccccCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 0 0000000 0000 0
Q ss_pred ------------------------------------------------------CCCCCCCCccccccccCceEEEEEec
Q 004630 262 ------------------------------------------------------GRSSGSKPTEALNKREGIREVFVIFG 287 (741)
Q Consensus 262 ------------------------------------------------------~~~~~~~~~~~~~~~~~k~~V~vlfG 287 (741)
++++.-=...+-.....++||.||=+
T Consensus 503 ~~~~~~k~~g~~d~~ia~~~~~~~~~v~~~r~~~~~~~~~k~vd~~a~ef~~~t~y~y~ty~~~~~~~~~~~kkvlilG~ 582 (1102)
T PLN02735 503 DDFYEVKRRGFSDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSSYDGECESAPTNKKKVLILGG 582 (1102)
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCEeEEEeeCCCccccCCCCCcceeECCCCCCcccCCCceEEEeCc
Confidence 00000000000001135789999988
Q ss_pred CC-----ccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHHHHH
Q 004630 288 GD-----TSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLA 362 (741)
Q Consensus 288 G~-----S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 362 (741)
|. +.|.|-++..+ +.+|++ .+|+++.|.-+++--- .+ + ...+..+..+.
T Consensus 583 G~~~igq~iefd~~~v~~---~~alr~-~G~~tI~v~~npetvs-----td---~-~~aD~~y~~pl------------- 636 (1102)
T PLN02735 583 GPNRIGQGIEFDYCCCHA---SFALQD-AGYETIMMNSNPETVS-----TD---Y-DTSDRLYFEPL------------- 636 (1102)
T ss_pred cccccCcccccceeHHHH---HHHHHH-cCCeEEEEeCCCcccc-----CC---c-ccCCeEEEEeC-------------
Confidence 86 55888777655 566753 6888887766553100 00 0 00001111000
Q ss_pred hhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHH-hccCccEEEEccCCCCCCc--hH
Q 004630 363 ACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGED--GT 439 (741)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dvvf~~lhG~~GEd--g~ 439 (741)
..++.++. .++.+|.|+|.+.|...-. ..
T Consensus 637 ------------------------------------------------~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~ 668 (1102)
T PLN02735 637 ------------------------------------------------TVEDVLNVIDLERPDGIIVQFGGQTPLKLALP 668 (1102)
T ss_pred ------------------------------------------------CHHHHHHHHHHhCCCEEEECCCchHHHHHHHH
Confidence 00111111 1356788888775432211 12
Q ss_pred HHHHHHH---------cCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcC
Q 004630 440 LQSLLEA---------EGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ 510 (741)
Q Consensus 440 iq~lLE~---------~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg 510 (741)
+...|+. .|+++.|++..+..+|+||..+|++ |+++|||+|++..+...+ .+.++.+++
T Consensus 669 l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~---l~~~GIp~p~~~~v~s~e--------ea~~~a~~i- 736 (1102)
T PLN02735 669 IQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAI---LNELKIEQPKGGIARSEA--------DALAIAKRI- 736 (1102)
T ss_pred HHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCeeEeCCHH--------HHHHHHHhc-
Confidence 2233332 3799999999999999999999998 999999999998875422 223456788
Q ss_pred CCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhccccc
Q 004630 511 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQST 590 (741)
Q Consensus 511 ~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~ 590 (741)
+||+||||+.++||+|+.+|++.++|.. +++.+++.. .+.++|||+||++.
T Consensus 737 GyPvvVKP~~g~gG~G~~iV~~~eeL~~---al~~a~~~~-----------------~~~~vlVEefI~~g--------- 787 (1102)
T PLN02735 737 GYPVVVRPSYVLGGRAMEIVYSDDKLKT---YLETAVEVD-----------------PERPVLVDKYLSDA--------- 787 (1102)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHHhc-----------------CCCCEEEEEecCCc---------
Confidence 6999999999999999999999999985 556665431 14579999999742
Q ss_pred ccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHH
Q 004630 591 NKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIE 670 (741)
Q Consensus 591 ~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~ 670 (741)
+|++|.++++....+.+++.++... +++++.|.+...+|++. +++++.++|++.+.
T Consensus 788 ---------------~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~--L~~e~~~~i~~~a~ 843 (1102)
T PLN02735 788 ---------------TEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQT--IPSSCLATIRDWTT 843 (1102)
T ss_pred ---------------EEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCC--CCHHHHHHHHHHHH
Confidence 4999999986433233333333321 34556666666777642 79999999999999
Q ss_pred HHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcC
Q 004630 671 LIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720 (741)
Q Consensus 671 ~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~ 720 (741)
+++++||+.|+++|||+++. +|++||+||||+|+- .+|..+++.|
T Consensus 844 ki~~~L~~~G~~~vqf~v~~-dg~~yviEiNpR~s~----t~p~~~katG 888 (1102)
T PLN02735 844 KLAKRLNVCGLMNCQYAITP-SGEVYIIEANPRASR----TVPFVSKAIG 888 (1102)
T ss_pred HHHHHcCCcceeeEEEEEcC-CCcEEEEEEeCCCCc----cHHHHHHHHC
Confidence 99999999999999999974 689999999999973 2444455443
No 12
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=3e-38 Score=388.79 Aligned_cols=512 Identities=18% Similarity=0.177 Sum_probs=336.2
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|+|..+.+.+ ++.++++++| ||+||||+.+++|+|+.++++.+|+..++.+.+..+....+||
T Consensus 136 l~~~Gipvp~~~~v~s~~----e~~~~~~~ig-----~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlv 206 (1066)
T PRK05294 136 MKKIGLPVPRSGIAHSME----EALEVAEEIG-----YPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLI 206 (1066)
T ss_pred HHHCCcCCCCeeeeCCHH----HHHHHHHHcC-----CCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEE
Confidence 467999999999987765 6666666554 5999999999999999999999998777665554344568999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~~~i~ 159 (741)
|+||+|.+|+++.++.++++. .+.++..|- +++ ...+.+. .....|+ .++++..++++
T Consensus 207 Ee~I~G~~Eisv~v~rd~~g~---~~~~~~~e~----------------~dp-~gih~g~-~~~~~Pa~~l~~~~~~~l~ 265 (1066)
T PRK05294 207 EESLLGWKEYEYEVMRDKNDN---CIIVCSIEN----------------IDP-MGVHTGD-SITVAPAQTLTDKEYQMLR 265 (1066)
T ss_pred EEcccCceEEEEEEEEcCCCC---EEEEeeeee----------------ccc-cceecCC-eEEEeCCCCCCHHHHHHHH
Confidence 999997579999999865432 222221110 111 1122232 3445787 68999999999
Q ss_pred HHHHHHHHHhCCC-CeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHH
Q 004630 160 EGASLLFQRLGLC-DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238 (741)
Q Consensus 160 ~~a~~~~~aLg~~-g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ 238 (741)
++|.+++++||+. |+++|||+++ ..+|++||+|||||++- ++.+ ..+.+|+++.+...+
T Consensus 266 ~~a~ki~~aLg~~~G~~~vef~~~----------------~~~g~~~viEiNPR~~~--s~~~--~s~~tG~pl~~~~~~ 325 (1066)
T PRK05294 266 DASIAIIREIGVETGGCNVQFALN----------------PKDGRYIVIEMNPRVSR--SSAL--ASKATGYPIAKVAAK 325 (1066)
T ss_pred HHHHHHHHHcCCccCceEEEEEEE----------------CCCCcEEEEEeecCCCc--ceee--eeHhhCCCHHHHHHH
Confidence 9999999999999 9999999983 14688999999999863 2222 112456655544333
Q ss_pred HH-------------HH-------HHh-------hC-----CC-CCCCC----Ccc------------------------
Q 004630 239 II-------------GH-------ACS-------RF-----PN-LASYN----SVS------------------------ 257 (741)
Q Consensus 239 ii-------------~~-------a~~-------r~-----~~-~~~~~----~~~------------------------ 257 (741)
+- .. ++. || .. -+.++ ..|
T Consensus 326 ~~lG~~l~~m~n~~~g~~~~~~~p~~~~v~~k~p~~~~~~y~k~~~~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~~~~ 405 (1066)
T PRK05294 326 LAVGYTLDEIKNDITGKTPASFEPSLDYVVTKIPRFAFEKFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALRSLEIGV 405 (1066)
T ss_pred HHcCCChHHhcCcccCCCcccccccCCeEEEEccCCccccccCCCCCccceecccceEEEEcCCHHHHHHHHHHhcCCCC
Confidence 21 00 000 00 00 00000 000
Q ss_pred --------------------------------------ccC-----------------------CCCCCCCCC-------
Q 004630 258 --------------------------------------SHL-----------------------PGRSSGSKP------- 269 (741)
Q Consensus 258 --------------------------------------~~~-----------------------~~~~~~~~~------- 269 (741)
+++ ...+.....
T Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1066)
T PRK05294 406 TGLDEDLFEEESLEELREELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKENGLPLDAELL 485 (1066)
T ss_pred CCCCccccccCCHHHHHhhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 000 000000000
Q ss_pred ---------------------------------cc--------------------------ccccccCceEEEEEecCC-
Q 004630 270 ---------------------------------TE--------------------------ALNKREGIREVFVIFGGD- 289 (741)
Q Consensus 270 ---------------------------------~~--------------------------~~~~~~~k~~V~vlfGG~- 289 (741)
.+ +......++||.||=+|.
T Consensus 486 ~~~k~~g~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~d~~a~e~~~~~~~~y~~~~~~~~~~~~~~kkvlilG~G~~ 565 (1066)
T PRK05294 486 REAKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYSTYEEECESNPSDRKKVLVLGSGPN 565 (1066)
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCcceeECCCCCCCccCCCceEEEECcccc
Confidence 00 000013567898888776
Q ss_pred ----ccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHHHHHhhh
Q 004630 290 ----TSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAACI 365 (741)
Q Consensus 290 ----S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 365 (741)
|.|.|-|+. +++.+|++ .+|+++.+-.++.. .. -.+...+ ...
T Consensus 566 ~ig~~~efdy~~v---~~i~alk~-~G~~vi~v~~npet-vs---------------~~~~~aD-------------~~y 612 (1066)
T PRK05294 566 RIGQGIEFDYCCV---HAVLALRE-AGYETIMVNCNPET-VS---------------TDYDTSD-------------RLY 612 (1066)
T ss_pred ccccccccchhHH---HHHHHHHH-CCCEEEEEeCCccc-cc---------------cccchhh-------------hee
Confidence 567777666 44677764 68888755333310 00 0000000 000
Q ss_pred hccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCCchHHHHHHH
Q 004630 366 EAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGTLQSLLE 445 (741)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEdg~iq~lLE 445 (741)
..+.. ...+.+.+ .++.+|.|++.+.|..+. .+...||
T Consensus 613 --~e~~~------------------------------------~e~v~~i~--~~e~~dgVi~~~g~~~~~--~la~~le 650 (1066)
T PRK05294 613 --FEPLT------------------------------------LEDVLEII--EKEKPKGVIVQFGGQTPL--KLAKALE 650 (1066)
T ss_pred --ecCCC------------------------------------HHHHHHHH--HHcCCCEEEEEeCchhHH--HHHHHHH
Confidence 00000 00001111 235689899887665543 6778899
Q ss_pred HcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCc
Q 004630 446 AEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCST 525 (741)
Q Consensus 446 ~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~ 525 (741)
.+|+|++|++..++.+|+||..++++ |+++|||+|++..+...+ .+.++.+++ +|||||||+.++||.
T Consensus 651 ~~Gi~ilg~s~~ai~~~~DK~~~~~~---L~~~GIp~P~~~~~~s~e--------e~~~~~~~i-gyPvvVKP~~~~Gg~ 718 (1066)
T PRK05294 651 AAGVPILGTSPDAIDLAEDRERFSKL---LEKLGIPQPPNGTATSVE--------EALEVAEEI-GYPVLVRPSYVLGGR 718 (1066)
T ss_pred HCCCceeCCCHHHHHHhCCHHHHHHH---HHHcCcCCCCeEEECCHH--------HHHHHHHhc-CCCeEEEeCCCCCCC
Confidence 99999999999999999999999998 999999999999886532 223455678 699999999999999
Q ss_pred ceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCce
Q 004630 526 GVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRW 605 (741)
Q Consensus 526 GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~ 605 (741)
||.+|++.++|.. +++.++... .+.++|||+||+|.
T Consensus 719 Gv~iv~~~eeL~~---~~~~a~~~s-----------------~~~~vlIEefI~G~------------------------ 754 (1066)
T PRK05294 719 AMEIVYDEEELER---YMREAVKVS-----------------PDHPVLIDKFLEGA------------------------ 754 (1066)
T ss_pred cEEEECCHHHHHH---HHHHHHhhC-----------------CCCcEEEEecCCCC------------------------
Confidence 9999999999985 445544321 14679999999996
Q ss_pred eEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Q 004630 606 VEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRID 685 (741)
Q Consensus 606 ~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvD 685 (741)
+|+++.++.+++ .+.+++.++.... ...+.|.+...+|+. .++++..+++++++.+++++||+.|+++||
T Consensus 755 ~E~sV~~v~dg~-~v~i~~i~e~i~~-------~gv~~Gds~~~~p~~--~l~~~~~~~i~~~a~~i~~aLg~~G~~~vq 824 (1066)
T PRK05294 755 IEVDVDAICDGE-DVLIGGIMEHIEE-------AGVHSGDSACSLPPQ--TLSEEIIEEIREYTKKLALELNVVGLMNVQ 824 (1066)
T ss_pred EEEEEEEEecCC-eEEEeeeEEeeee-------ccccCCCCcEEecCC--CCCHHHHHHHHHHHHHHHHHcCCeeeEEEE
Confidence 599999887644 2223333222111 112334445556653 278999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEecCCCCC
Q 004630 686 AFVNVDNGEVLIIEVNTVPG 705 (741)
Q Consensus 686 f~v~~~~g~~~viEINt~Pg 705 (741)
|+++ +|++||+|||++++
T Consensus 825 f~~~--~~~~yViEiNpR~s 842 (1066)
T PRK05294 825 FAVK--DDEVYVIEVNPRAS 842 (1066)
T ss_pred EEEE--CCeEEEEEEecCCC
Confidence 9998 57899999999975
No 13
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=6.1e-37 Score=375.89 Aligned_cols=510 Identities=18% Similarity=0.186 Sum_probs=334.5
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|+|..+.+.+ ++.++++.+ +||+||||..+++|+|+.+++|.+|+..++...+..+....+||
T Consensus 135 l~~~Gipvp~~~~v~s~~----e~~~~~~~i-----gyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlV 205 (1050)
T TIGR01369 135 MKEIGEPVPESEIAHSVE----EALAAAKEI-----GYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLV 205 (1050)
T ss_pred HHHCCCCCCCeeecCCHH----HHHHHHHHh-----CCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEE
Confidence 467999999999987755 555566554 45999999999999999999999998777777664333368999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~~~~i~ 159 (741)
|+||+|.+|+++.++++.+|+ .+.+...|. ++... .+.+. .....|+. ++++..++++
T Consensus 206 Ee~I~G~~Eiev~v~rd~~g~---~~~~~~~e~----------------~~p~g-vh~g~-~i~v~Pa~tl~~~~~~~l~ 264 (1050)
T TIGR01369 206 EKSLAGWKEIEYEVMRDSNDN---CITVCNMEN----------------FDPMG-VHTGD-SIVVAPSQTLTDKEYQMLR 264 (1050)
T ss_pred EEcccCceEEEEEEEEeCCCC---EEEEeecee----------------ccCcc-eecCc-eEEEecCCCCCHHHHHHHH
Confidence 999997679999999875433 122221111 11111 12222 33457875 8889999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++|.+++++||+.|.++|||+++ ..+|++||+|||||++- ++.+ ..+++|++..++..++
T Consensus 265 ~~a~~i~~~Lg~~G~~~Vef~l~----------------~~~g~~~viEiNPR~~~--s~~l--~s~atG~pl~~~~~~~ 324 (1050)
T TIGR01369 265 DASIKIIRELGIEGGCNVQFALN----------------PDSGRYYVIEVNPRVSR--SSAL--ASKATGYPIAKVAAKL 324 (1050)
T ss_pred HHHHHHHHHcCCcceeEEEEEEE----------------CCCCcEEEEEeecCcCc--chhh--hhHHhCCCHHHHHHHH
Confidence 99999999999999999999983 13578999999999873 3322 2335566665543332
Q ss_pred H---------H----H-------HH-------hhCCCC-------CCCCC---c--------------------------
Q 004630 240 I---------G----H-------AC-------SRFPNL-------ASYNS---V-------------------------- 256 (741)
Q Consensus 240 i---------~----~-------a~-------~r~~~~-------~~~~~---~-------------------------- 256 (741)
- + . ++ -||+-. +..+. .
T Consensus 325 alG~~l~~~~n~i~g~~~~~~~p~~~~~~~k~p~~~~~~~~~~~~~~~~~~k~~G~v~~~g~~~~ea~~ka~~~~~~~~~ 404 (1050)
T TIGR01369 325 AVGYGLDELKNPVTGTTPASFEPSLDYVVVKIPRWDFDKFAGVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGAT 404 (1050)
T ss_pred HcCCCchhhcCCCcCcCccccCcCCCeEEEEEEeCCCCCCCcccCCcCcccceeeEEEEECCCHHHHHHHHHHHhccCCC
Confidence 2 0 0 00 000000 00000 0
Q ss_pred ------------------------------------cccC-----------------------CCCC-----CCC-----
Q 004630 257 ------------------------------------SSHL-----------------------PGRS-----SGS----- 267 (741)
Q Consensus 257 ------------------------------------~~~~-----------------------~~~~-----~~~----- 267 (741)
++++ ...+ ...
T Consensus 405 ~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1050)
T TIGR01369 405 GFDLPDREVEPDEDLWRALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKLTELDPELL 484 (1050)
T ss_pred CCCccccCCCCHHHHHHhcCCCCCchHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 0000 0000 000
Q ss_pred ----------------------------------------C------------------CccccccccCceEEEEEecCC
Q 004630 268 ----------------------------------------K------------------PTEALNKREGIREVFVIFGGD 289 (741)
Q Consensus 268 ----------------------------------------~------------------~~~~~~~~~~k~~V~vlfGG~ 289 (741)
| ...+......++||.||=+|.
T Consensus 485 ~~~k~~g~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~k~vd~~a~e~~~~~~~~y~~~~~~~~~~~~~~~~kvlvlG~G~ 564 (1050)
T TIGR01369 485 RRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYSTYEGERDDVPFTDKKKVLVLGSGP 564 (1050)
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEeecCCCCcccCCCCeeEecCCCCCCcccCCCCceEEEecCcc
Confidence 0 000000113456888887765
Q ss_pred -----ccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHHHHHhh
Q 004630 290 -----TSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAAC 364 (741)
Q Consensus 290 -----S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 364 (741)
+.|.|-++..+ +++|.+ .+|+++.+.-++.. +.. .+...+.. .
T Consensus 565 ~rig~~~efd~~~v~~---i~al~~-~G~~vI~v~~npet-vs~---------------d~~~~D~l----y-------- 612 (1050)
T TIGR01369 565 NRIGQGVEFDYCCVHA---VLALRE-LGYETIMINYNPET-VST---------------DYDTSDRL----Y-------- 612 (1050)
T ss_pred cccccccccchHHHHH---HHHHHh-CCCEEEEEecCCcc-ccc---------------cccccceE----E--------
Confidence 56777665544 677754 68888755433310 000 00000000 0
Q ss_pred hhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHH-hccCccEEEEccCCCCCCchHHHHH
Q 004630 365 IEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSL 443 (741)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dvvf~~lhG~~GEdg~iq~l 443 (741)
..+. +.+..++. .++.+|.|++...|... -.+...
T Consensus 613 ---~ep~---------------------------------------~~e~vl~i~~~e~idgVI~~~gg~~~--~~la~~ 648 (1050)
T TIGR01369 613 ---FEPL---------------------------------------TFEDVMNIIELEKPEGVIVQFGGQTP--LNLAKA 648 (1050)
T ss_pred ---EecC---------------------------------------CHHHHHHHHhhcCCCEEEEccCcHhH--HHHHHH
Confidence 0000 00111111 13567888888765422 256788
Q ss_pred HHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC
Q 004630 444 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 523 (741)
Q Consensus 444 LE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gs 523 (741)
|+.+|+|+.|++..++..|.||..++++ |+++|||+|++..+.+.+ .+.++.+++ +||+||||+.++|
T Consensus 649 le~~Gi~i~G~s~~~i~~~~DK~~f~~l---L~~~GIp~P~~~~v~s~e--------e~~~~~~~i-gyPvIVKP~~~~G 716 (1050)
T TIGR01369 649 LEEAGVPILGTSPESIDRAEDREKFSEL---LDELGIPQPKWKTATSVE--------EAVEFASEI-GYPVLVRPSYVLG 716 (1050)
T ss_pred HHHCCCcEECCCHHHHHHHCCHHHHHHH---HHHCCcCCCCeEEECCHH--------HHHHHHHhc-CCCEEEEECCCCC
Confidence 9999999999999999999999999998 999999999999886532 234456678 6999999999999
Q ss_pred CcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc-CcchhhcccccccchhhhhhcCC
Q 004630 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADRLMWKGN 602 (741)
Q Consensus 524 S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~~~~~g~ 602 (741)
|.||.+|++.++|.. +++.++... ...++|||+||+ |.
T Consensus 717 g~gv~iv~~~eeL~~---~l~~a~~~s-----------------~~~~vlVeefI~~G~--------------------- 755 (1050)
T TIGR01369 717 GRAMEIVYNEEELRR---YLEEAVEVS-----------------PEHPVLIDKYLEDAV--------------------- 755 (1050)
T ss_pred CCCeEEECCHHHHHH---HHHHHHHhC-----------------CCCCEEEeecCCCCe---------------------
Confidence 999999999999985 445544321 146799999999 54
Q ss_pred CceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCccee
Q 004630 603 SRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFS 682 (741)
Q Consensus 603 ~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~ 682 (741)
|+++.++.+++.... .+.++... +...+.|.+....|+.. +++++.+++++++.+++++||+.|++
T Consensus 756 ----E~~Vd~l~d~g~v~i-~~i~e~~~-------~~gv~sGds~~~~P~~~--l~~~~~~~i~~~a~ki~~aLgi~G~~ 821 (1050)
T TIGR01369 756 ----EVDVDAVSDGEEVLI-PGIMEHIE-------EAGVHSGDSTCVLPPQT--LSAEIVDRIKDIVRKIAKELNVKGLM 821 (1050)
T ss_pred ----EEEEEEEEeCCEEEE-EEEEEeec-------ccCCcCCCceEEecCCC--CCHHHHHHHHHHHHHHHHHCCCcceE
Confidence 999999987654332 22222111 11123445555677642 68899999999999999999999999
Q ss_pred EEEEEEEcCCCcEEEEecCCCCC
Q 004630 683 RIDAFVNVDNGEVLIIEVNTVPG 705 (741)
Q Consensus 683 rvDf~v~~~~g~~~viEINt~Pg 705 (741)
++||+++ +|++||+|||++++
T Consensus 822 ~vqf~~~--~~~~yvIEvNpR~s 842 (1050)
T TIGR01369 822 NIQFAVK--DGEVYVIEVNPRAS 842 (1050)
T ss_pred EEEEEEE--CCeEEEEEEeCCCC
Confidence 9999998 47899999999875
No 14
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=100.00 E-value=7e-37 Score=375.45 Aligned_cols=509 Identities=16% Similarity=0.172 Sum_probs=330.9
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|++..+++.+ ++.++++++| ||+||||..+++|+|+.+++|.+|+.+++.+.+..+....+||
T Consensus 136 l~~~GIpvp~~~~v~s~e----e~~~~~~~ig-----yPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLV 206 (1068)
T PRK12815 136 MKELGEPVPESEIVTSVE----EALAFAEKIG-----FPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLL 206 (1068)
T ss_pred HHHcCcCCCCceeeCCHH----HHHHHHHHcC-----CCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEE
Confidence 468999999999998765 6666665544 5999999999999999999999998877766664333468999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~~~i~ 159 (741)
|+||+|.+|++|.++.+.+|. .+.+...+- ++ ....+.+. .....|+ .++++..++++
T Consensus 207 Ee~I~G~~E~sv~v~rD~~g~---~~~~~~~e~----------------~~-p~gi~tG~-s~~v~Pa~~l~~~~~~~l~ 265 (1068)
T PRK12815 207 EESIAGWKEIEYEVMRDRNGN---CITVCNMEN----------------ID-PVGIHTGD-SIVVAPSQTLTDDEYQMLR 265 (1068)
T ss_pred EEccCCCeEEEEEEEEcCCCC---EEEEEecee----------------cc-cccccCCc-eEEEecCCCCCHHHHHHHH
Confidence 999997579999999865432 222222110 00 01111121 3345677 58999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++|.+++++||+.|.++|||+++ ..+|++||+|||||++ +++.+.. +++|++..++...+
T Consensus 266 ~~a~ki~~~Lg~~G~~~vef~l~----------------~~~g~~~ViEINPR~~--~s~~l~~--~atG~pl~~~~~~~ 325 (1068)
T PRK12815 266 SASLKIISALGVVGGCNIQFALD----------------PKSKQYYLIEVNPRVS--RSSALAS--KATGYPIAKIAAKL 325 (1068)
T ss_pred HHHHHHHHHcCCCCceEEEEEEE----------------CCCCcEEEEEEecCcc--cchhhhh--HhhCCcHHHHHHHH
Confidence 99999999999999999999983 1347899999999876 4443321 23344433332221
Q ss_pred -------------HHHH---H-----------hhC-----CC--------------------------------------
Q 004630 240 -------------IGHA---C-----------SRF-----PN-------------------------------------- 249 (741)
Q Consensus 240 -------------i~~a---~-----------~r~-----~~-------------------------------------- 249 (741)
+... + -|| ..
T Consensus 326 alG~~l~ei~~~i~g~~~a~~ep~~d~~~~k~p~~~f~~y~~~~~~~g~kmks~G~v~~ig~~~eea~~ka~~~~~~~~~ 405 (1068)
T PRK12815 326 AVGYTLNELKNPVTGLTYASFEPALDYVVVKFPRWPFDKFGYADRTLGTQMKATGEVMAIGRNFESAFQKALRSLEIKRN 405 (1068)
T ss_pred HcCCChHHhcCCccCCcccccCCccceEEEEeccCccccccCccccccceecccceEEEecCCHHHHHHHHHHhhcCCCC
Confidence 1000 0 000 00
Q ss_pred -------------------CCCCCCc-----------cccC-----------------------CCCCCCCCC--c----
Q 004630 250 -------------------LASYNSV-----------SSHL-----------------------PGRSSGSKP--T---- 270 (741)
Q Consensus 250 -------------------~~~~~~~-----------~~~~-----------------------~~~~~~~~~--~---- 270 (741)
+..++.. |+++ ...+..... +
T Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1068)
T PRK12815 406 GLSLPIELSGKSDEELLQDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVALEKKLAEDGLDLSADLL 485 (1068)
T ss_pred CCCCccccccCCHHHHHHHhccCCCChHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCccCCHHHH
Confidence 0000000 0000 000000000 0
Q ss_pred ------------------------------------------------------------ccccccc-CceEEEEEecCC
Q 004630 271 ------------------------------------------------------------EALNKRE-GIREVFVIFGGD 289 (741)
Q Consensus 271 ------------------------------------------------------------~~~~~~~-~k~~V~vlfGG~ 289 (741)
.+..... .++||.||=+|.
T Consensus 486 ~~~k~~gfsd~~ia~~~~~~~~~v~~~r~~~~~~p~~k~vd~~a~ef~~~t~~~y~ty~~~~~~~~~~~~kkvLIlG~G~ 565 (1068)
T PRK12815 486 RKVKEKGFSDALLAELTGVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYSTYFGESEAEPSSEKKKVLILGSGP 565 (1068)
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEEecCCcCcccCCCCceeeeCCCCCcCccCCCCceEEEecccc
Confidence 0000012 578888888875
Q ss_pred -----ccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHHHHHhh
Q 004630 290 -----TSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEEVLAAC 364 (741)
Q Consensus 290 -----S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 364 (741)
+.|.|-++.-+ +.+|++ .+|+++.+.-++.. ... + ++ ..+..|..
T Consensus 566 ~rig~~~efdy~~v~~---~~aLk~-~G~~vI~vn~npet-vs~----~---~~-~aD~~y~e----------------- 615 (1068)
T PRK12815 566 IRIGQGIEFDYSSVHA---AFALKK-EGYETIMINNNPET-VST----D---YD-TADRLYFE----------------- 615 (1068)
T ss_pred cccccccccchhHHHH---HHHHHH-cCCEEEEEeCCccc-ccc----c---cc-cCceEEEc-----------------
Confidence 55777655544 566754 68888755333210 000 0 00 00000100
Q ss_pred hhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHH-hccCccEEEEccCCCCCCchHHHHH
Q 004630 365 IEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKL-AKENQATVFIAVHGGIGEDGTLQSL 443 (741)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dvvf~~lhG~~GEdg~iq~l 443 (741)
| ..++..++. .++.+|.|++.+.|.. --.+...
T Consensus 616 -----p---------------------------------------~~~e~vl~I~~~e~~dgVI~~~g~~~--~~~la~~ 649 (1068)
T PRK12815 616 -----P---------------------------------------LTLEDVLNVAEAENIKGVIVQFGGQT--AINLAKG 649 (1068)
T ss_pred -----c---------------------------------------CCHHHHHHHHhhcCCCEEEEecCcHH--HHHHHHH
Confidence 0 000111111 1356899999776542 2356778
Q ss_pred HHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC
Q 004630 444 LEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC 523 (741)
Q Consensus 444 LE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gs 523 (741)
|+.+|+|+.|++..+...|.||..++++ |+++|||+|++..+...+ .+.++.+++ +||+||||+.++|
T Consensus 650 le~~Gi~ilG~s~e~i~~~~DK~~f~~l---l~~~GIp~P~~~~~~s~e--------e~~~~~~~i-gyPvVVKP~~~~G 717 (1068)
T PRK12815 650 LEEAGLTILGTSPDTIDRLEDRDRFYQL---LDELGLPHVPGLTATDEE--------EAFAFAKRI-GYPVLIRPSYVIG 717 (1068)
T ss_pred HHHCCCeEECCcHHHHHHHcCHHHHHHH---HHHcCcCCCCeEEeCCHH--------HHHHHHHhc-CCCEEEEeCCCCC
Confidence 8999999999999999999999999998 999999999999886532 233455778 6999999999999
Q ss_pred CcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCC
Q 004630 524 STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNS 603 (741)
Q Consensus 524 S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~ 603 (741)
|.||.+|++.++|..+ ++.+... +.++|||+||+|.
T Consensus 718 g~gv~iv~~~eeL~~~---l~~~~s~-------------------~~~vlIeefI~G~---------------------- 753 (1068)
T PRK12815 718 GQGMAVVYDEPALEAY---LAENASQ-------------------LYPILIDQFIDGK---------------------- 753 (1068)
T ss_pred CCCEEEECCHHHHHHH---HHHhhcC-------------------CCCEEEEEeecCc----------------------
Confidence 9999999999999854 3443221 5789999999996
Q ss_pred ceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeE
Q 004630 604 RWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSR 683 (741)
Q Consensus 604 ~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~r 683 (741)
|+++.++.+++.. .+++.++..... ..+.|.+..+.|+.. ++++..+++++.+.+++++||+.|+++
T Consensus 754 ---E~~Vd~i~dg~~v-~i~~i~e~~e~~-------gv~sGds~~v~pp~~--l~~~~~~~i~~~a~ki~~~L~~~G~~n 820 (1068)
T PRK12815 754 ---EYEVDAISDGEDV-TIPGIIEHIEQA-------GVHSGDSIAVLPPQS--LSEEQQEKIRDYAIKIAKKLGFRGIMN 820 (1068)
T ss_pred ---eEEEEEEEcCCce-EEeeEEEEeecc-------CCcCCCeeEEECCCC--CCHHHHHHHHHHHHHHHHHcCCccEEE
Confidence 9999888865433 233333221111 122344445565532 788999999999999999999999999
Q ss_pred EEEEEEcCCCcEEEEecCCCCCC
Q 004630 684 IDAFVNVDNGEVLIIEVNTVPGM 706 (741)
Q Consensus 684 vDf~v~~~~g~~~viEINt~Pg~ 706 (741)
+||+++ +|++|++||||+++-
T Consensus 821 iqf~v~--~~~~yviEiNpR~s~ 841 (1068)
T PRK12815 821 IQFVLA--NDEIYVLEVNPRASR 841 (1068)
T ss_pred EEEEEE--CCcEEEEEEeCCCCc
Confidence 999998 478999999999874
No 15
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=100.00 E-value=8.8e-37 Score=307.92 Aligned_cols=200 Identities=27% Similarity=0.436 Sum_probs=163.2
Q ss_pred HHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCC
Q 004630 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNS 554 (741)
Q Consensus 475 l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~ 554 (741)
|+++|||||+|+.+...++.. ..+.++...+ +||+||||+.+|||+||++|++.++|. +++..++++
T Consensus 2 ~~~~gI~tp~~~~~~~~~~~~----~~~~~~~~~l-~~P~~VKP~~~GsS~Gi~~v~~~~el~---~ai~~~~~~----- 68 (203)
T PF07478_consen 2 LKSAGIPTPPYVVVKKNEDDS----DSIEKILEDL-GFPLFVKPASEGSSIGISKVHNEEELE---EAIEKAFKY----- 68 (203)
T ss_dssp HHHTT-BB-SEEEEETTSHHH----HHHHHHHHHH-SSSEEEEESSTSTTTTEEEESSHHHHH---HHHHHHTTT-----
T ss_pred hhhcCCCCCCEEEEecccccc----hhHHHHHhhc-CCCEEEEECCCCccEEEEEcCCHHHHH---HHHHHHhhh-----
Confidence 789999999999999876432 2235566788 799999999999999999999999988 578888766
Q ss_pred cccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCcc
Q 004630 555 FSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDI 634 (741)
Q Consensus 555 l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~ 634 (741)
++.+|||+||+|+ |++|+|++++. ...+ |..++....++
T Consensus 69 --------------~~~vlVEefI~G~-------------------------E~tv~vl~~~~-~~~~-~~~ei~~~~~~ 107 (203)
T PF07478_consen 69 --------------DDDVLVEEFISGR-------------------------EFTVGVLGNGE-PRVL-PPVEIVFPSEF 107 (203)
T ss_dssp --------------HSEEEEEE--SSE-------------------------EEEEEEEESSS-TEEE-EEEEEEESSSE
T ss_pred --------------cceEEEEeeeccc-------------------------ceEEEEEecCC-cccC-ceEEEEcCCCc
Confidence 6899999999996 99999999654 4433 45566677799
Q ss_pred cccccccc--CCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchH
Q 004630 635 LSLEEKFQ--GGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVL 712 (741)
Q Consensus 635 ~d~~~ky~--~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l 712 (741)
|||++||. ++.....+|+. +++++.++|+++|++++++|||+|++|||||++. +|++||+||||+||||++|.+
T Consensus 108 ~d~~~Ky~~~~~~~~~~~pa~---l~~~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~-~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 108 YDYEAKYQPADSETEYIIPAD---LSEELQEKIKEIAKKAFKALGCRGYARIDFRVDE-DGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp EEHHHHHSGCCSCEEEESS-S---S-HHHHHHHHHHHHHHHHHTTTCSEEEEEEEEET-TTEEEEEEEESS-G-STTSHH
T ss_pred eehhheeccCCCceEEEecCC---CCHHHHHHHHHHHHHHHHHHcCCCceeEEEEecc-CCceEEEeccCcccccCCCHH
Confidence 99999994 46677788887 6999999999999999999999999999999985 799999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHH
Q 004630 713 IHQALSEQPPMYPHQFFRKVLD 734 (741)
Q Consensus 713 ~~~a~~a~~~~~p~~l~~~li~ 734 (741)
+++|.++| +...+|+++||+
T Consensus 184 p~~~~~~G--~sy~~li~~iie 203 (203)
T PF07478_consen 184 PRMAEAAG--ISYEDLIERIIE 203 (203)
T ss_dssp HHHHHHTT----HHHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHhC
Confidence 99888775 444799999985
No 16
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=100.00 E-value=1.3e-36 Score=306.61 Aligned_cols=201 Identities=30% Similarity=0.447 Sum_probs=164.6
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||||+|+.+...++....+.+....++ ||+||||+.+|+|.||++|++.+|+..++.+++ .+++++||
T Consensus 2 ~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~-----~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~--~~~~~vlV 74 (203)
T PF07478_consen 2 LKSAGIPTPPYVVVKKNEDDSDSIEKILEDLG-----FPLFVKPASEGSSIGISKVHNEEELEEAIEKAF--KYDDDVLV 74 (203)
T ss_dssp HHHTT-BB-SEEEEETTSHHHHHHHHHHHHHS-----SSEEEEESSTSTTTTEEEESSHHHHHHHHHHHT--TTHSEEEE
T ss_pred hhhcCCCCCCEEEEecccccchhHHHHHhhcC-----CCEEEEECCCCccEEEEEcCCHHHHHHHHHHHh--hhcceEEE
Confidence 46899999999999988753333334444444 599999999999999999999999988888875 57889999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCC-CCCeEEEcCCCCCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP-TQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~P~~~~~~~~~~i~ 159 (741)
||||+| +||+|+|++++ .+.++++.|+.. ..++++|+.||.+ +....+.+|+.+++++.++|+
T Consensus 75 EefI~G-~E~tv~vl~~~-----~~~~~~~~ei~~----------~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~~~~i~ 138 (203)
T PF07478_consen 75 EEFISG-REFTVGVLGNG-----EPRVLPPVEIVF----------PSEFYDYEAKYQPADSETEYIIPADLSEELQEKIK 138 (203)
T ss_dssp EE--SS-EEEEEEEEESS-----STEEEEEEEEEE----------SSSEEEHHHHHSGCCSCEEEESS-SS-HHHHHHHH
T ss_pred Eeeecc-cceEEEEEecC-----CcccCceEEEEc----------CCCceehhheeccCCCceEEEecCCCCHHHHHHHH
Confidence 999997 99999999732 256788887764 4589999999954 234788999999999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++|.+++++|||+|++|||||+ +++|++||+|+|++|||++.|.+|.++++.|+||++|+.+|
T Consensus 139 ~~a~~a~~~lg~~~~~RiD~rv-----------------~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 139 EIAKKAFKALGCRGYARIDFRV-----------------DEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp HHHHHHHHHTTTCSEEEEEEEE-----------------ETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHcCCCceeEEEEe-----------------ccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999998 56899999999999999999999999999999999999999
Q ss_pred HH
Q 004630 240 IG 241 (741)
Q Consensus 240 i~ 241 (741)
|+
T Consensus 202 ie 203 (203)
T PF07478_consen 202 IE 203 (203)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 17
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=100.00 E-value=5.9e-32 Score=296.07 Aligned_cols=210 Identities=24% Similarity=0.336 Sum_probs=174.0
Q ss_pred CccCCCCCCCeEEEecCcc--chhhhhhh-hhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCe
Q 004630 1 MSKQGFITVPSFLLQGSEV--NESELSNW-FVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR 77 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~--~~~~l~~~-~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~ 77 (741)
|+++|||||||..+...++ +.+++.+. .+. .+||+||||+.+|+|+||+++++.+|+..++..++ .+++.
T Consensus 137 l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~-----lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~--~~~~~ 209 (364)
T PRK14570 137 LKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEV-----LGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAF--KYDLT 209 (364)
T ss_pred HHHcCCCCCCEEEEeccccccchHHHHHHHHHh-----cCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHH--hCCCC
Confidence 4679999999998865432 11223222 222 45699999999999999999999999888888776 35678
Q ss_pred EEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCC--CCCeEEEcCCCCCHHHH
Q 004630 78 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP--TQQVAYHTPPRFPIVVI 155 (741)
Q Consensus 78 vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~--~~~~~~~~P~~~~~~~~ 155 (741)
+|||+||.| +|++|.|+++ ..+.+++++|+... ...+++|+.||.. +......+|+++++++.
T Consensus 210 vlVEefI~G-rEi~v~Vlg~-----~~~~v~~~~Ei~~~---------~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~ 274 (364)
T PRK14570 210 VVIEKFIEA-REIECSVIGN-----EQIKIFTPGEIVVQ---------DFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHL 274 (364)
T ss_pred EEEECCcCC-EEEEEEEECC-----CCceEeeeEEEEeC---------CCCccCHHHhcCCCCCCceEEECCCCCCHHHH
Confidence 999999997 9999999953 23567788887542 2368999999963 33235678999999999
Q ss_pred HHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCC-CCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHH
Q 004630 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTE-WGTILFTDINLISGMEQTSFLFQQASKVGFSHSN 234 (741)
Q Consensus 156 ~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~-~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ 234 (741)
++|+++|.+++++|||+|++||||++ ++ +|++||+||||+|||++.|.+|++|+++|++|.+
T Consensus 275 ~~i~~~A~~~~~aLg~~G~~RvDf~l-----------------~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~ 337 (364)
T PRK14570 275 LDIKEYAFLTYKNLELRGMARIDFLI-----------------EKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKS 337 (364)
T ss_pred HHHHHHHHHHHHHhCCcceEEEEEEE-----------------ECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHH
Confidence 99999999999999999999999998 33 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 004630 235 ILRTIIGHACSRFPN 249 (741)
Q Consensus 235 ll~~ii~~a~~r~~~ 249 (741)
|+.+||..|++|+..
T Consensus 338 li~~li~~a~~r~~~ 352 (364)
T PRK14570 338 LVDNLIDLAFQSYIK 352 (364)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999754
No 18
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.97 E-value=8.2e-31 Score=286.64 Aligned_cols=208 Identities=22% Similarity=0.250 Sum_probs=171.5
Q ss_pred CccCCCCCCCeEEEecCccc--hhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeE
Q 004630 1 MSKQGFITVPSFLLQGSEVN--ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRV 78 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~v 78 (741)
|+++|||||+|..+...++. .+++.+..+ .++||+||||+.+|+|+||+++++.+|+..++..++ ..++.+
T Consensus 138 l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~-----~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~--~~~~~v 210 (347)
T PRK14572 138 FLQSGQKVAPFFELEKLKYLNSPRKTLLKLE-----SLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIF--ESDSKV 210 (347)
T ss_pred HHHcCCCCCCEEEEEccccccChHHHHHHHH-----hcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHH--hcCCCE
Confidence 46799999999998765421 112222222 346799999999999999999999999887777765 356789
Q ss_pred EEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHH
Q 004630 79 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158 (741)
Q Consensus 79 lVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i 158 (741)
||||||+| +||+|.++++.++++..++++++.|+.. ...+++|+.||..+. ....+|+++++++.+++
T Consensus 211 lVEefI~G-~E~sv~vi~~~~~g~~~~~~l~~~ei~~----------~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i 278 (347)
T PRK14572 211 MSQSFLSG-TEVSCGVLERYRGGKRNPIALPATEIVP----------GGEFFDFESKYKQGG-SEEITPARISDQEMKRV 278 (347)
T ss_pred EEEcCccc-EEEEEEEEeCccCCCCCceecccEEEec----------CCCccCHHHccCCCC-eEEEECCCCCHHHHHHH
Confidence 99999998 9999999965332233456677776542 346889999998765 55678999999999999
Q ss_pred HHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHH
Q 004630 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238 (741)
Q Consensus 159 ~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ 238 (741)
+++|.+++++||++|++||||++ + +|++||+|||++|||+++|.+|++++++|++|.+|+..
T Consensus 279 ~~~a~~~~~~Lg~~G~~rvD~~~-----------------~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~ 340 (347)
T PRK14572 279 QELAIRAHESLGCKGYSRTDFII-----------------V-DGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTD 340 (347)
T ss_pred HHHHHHHHHHhCCcceeEEEEEE-----------------E-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999997 3 57899999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 004630 239 IIGHACS 245 (741)
Q Consensus 239 ii~~a~~ 245 (741)
||+.|++
T Consensus 341 ii~~a~~ 347 (347)
T PRK14572 341 LIEIGLK 347 (347)
T ss_pred HHHHHhC
Confidence 9999863
No 19
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.97 E-value=3.1e-30 Score=280.58 Aligned_cols=202 Identities=26% Similarity=0.362 Sum_probs=170.0
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||||++..+.+.+.....+.++.+ ..+||+||||+.+++|+||.++++.+|+.+++.+++ .+++.+||
T Consensus 131 l~~~GIp~p~~~~~~~~~~~~~~~~~~~~-----~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~--~~~~~vlv 203 (333)
T PRK01966 131 LAAAGIPVAPYVVLTRGDWEEASLAEIEA-----KLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAF--EYDRKVLV 203 (333)
T ss_pred HHHcCCCCCCEEEEeccccchhhHHHHHH-----hcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH--hcCCcEEE
Confidence 46799999999998776521012233333 345699999999999999999999999888887765 35789999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~ 160 (741)
|+||+| +|++|.++++ + ..+++++|+.. ...+++|..||..+. ..+.+|+.+++++.+++++
T Consensus 204 EefI~G-~E~~v~vl~~-~-----~~~~~~~ei~~----------~~~~~d~~~ky~~~~-~~~~~Pa~l~~~~~~~i~~ 265 (333)
T PRK01966 204 EQGIKG-REIECAVLGN-D-----PKASVPGEIVK----------PDDFYDYEAKYLDGS-AELIIPADLSEELTEKIRE 265 (333)
T ss_pred EcCcCC-EEEEEEEECC-C-----CeEcccEEEec----------CCceEcHHHccCCCC-ceEEeCCCCCHHHHHHHHH
Confidence 999998 9999999963 1 13566677653 235899999997654 5678999999999999999
Q ss_pred HHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHHH
Q 004630 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240 (741)
Q Consensus 161 ~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ii 240 (741)
+|.+++++|||+|++||||++ +++|++||+||||+|||+++|.+|.+++++|++|.+++.+||
T Consensus 266 ~a~~~~~aLg~~G~~rvDf~~-----------------~~~g~~~vlEiNt~Pg~t~~s~~p~~~~~~G~~~~~l~~~ii 328 (333)
T PRK01966 266 LAIKAFKALGCSGLARVDFFL-----------------TEDGEIYLNEINTMPGFTPISMYPKLWEASGLSYPELIDRLI 328 (333)
T ss_pred HHHHHHHHhCCcceEEEEEEE-----------------cCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999997 567899999999999999999999999999999999999999
Q ss_pred HHHH
Q 004630 241 GHAC 244 (741)
Q Consensus 241 ~~a~ 244 (741)
..|+
T Consensus 329 ~~a~ 332 (333)
T PRK01966 329 ELAL 332 (333)
T ss_pred HHHh
Confidence 9986
No 20
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.97 E-value=6.2e-30 Score=274.50 Aligned_cols=235 Identities=14% Similarity=0.189 Sum_probs=172.4
Q ss_pred CccEEEEccCC---CCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCch
Q 004630 422 NQATVFIAVHG---GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 498 (741)
Q Consensus 422 ~~Dvvf~~lhG---~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~ 498 (741)
.+|+||+.+|+ .+|+++ +..||.+| +|+++++.++++|+||..++++ |+++|||+|++..+...+
T Consensus 57 ~~d~v~~~~~~~~~~~~~~~--~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~---l~~~gip~P~t~~~~~~~------ 124 (300)
T PRK10446 57 HFDAVIPRIGTAITFYGTAA--LRQFEMLG-SYPLNESVAIARARDKLRSMQL---LARQGIDLPVTGIAHSPD------ 124 (300)
T ss_pred CCCEEEEcCCCchhhHHHHH--HHHHHHCC-CceecCHHHHHhhhcHHHHHHH---HHHcCCCCCCEEEeCCHH------
Confidence 47999999998 444565 77999999 7899999999999999999998 999999999998775322
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecc
Q 004630 499 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578 (741)
Q Consensus 499 ~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI 578 (741)
.+.++...+++||+||||.++++|.||+++++.+++..+. +....+ +..++|||||
T Consensus 125 --~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~---~~~~~~-------------------~~~~lvQe~I 180 (300)
T PRK10446 125 --DTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVI---DAFRGL-------------------NAHILVQEYI 180 (300)
T ss_pred --HHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHH---HHHHhc-------------------CCCEEEEeee
Confidence 1233334443589999999999999999999988877433 332223 4679999999
Q ss_pred cCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCC
Q 004630 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658 (741)
Q Consensus 579 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~ 658 (741)
+.. .| +|++|.+++++ ..+.++.....+ +|.++|..|.... |.+ ++
T Consensus 181 ~~~------------------~g----~d~rv~vig~~-----~~~~~~r~~~~~--~~~~n~~~g~~~~--~~~---l~ 226 (300)
T PRK10446 181 KEA------------------QG----CDIRCLVVGDE-----VVAAIERRAKEG--DFRSNLHRGGAAS--VAS---IT 226 (300)
T ss_pred ccC------------------CC----ceEEEEEECCE-----EEEEEEEecCCC--chhheeccCCeec--cCC---CC
Confidence 521 01 39999999743 223344333222 6778887665432 333 34
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~ 738 (741)
++++++|.+++++|||. ++||||+++. +| +||+|||++|||+.. +.+. |..++..+++.+.+.+..
T Consensus 227 ----~~~~~~a~~a~~alg~~-~~gvD~~~~~-~g-~~vlEvN~~pg~~~~------~~~~-g~~~~~~~~~~i~~~~~~ 292 (300)
T PRK10446 227 ----PQEREIAIKAARTMALD-VAGVDILRAN-RG-PLVMEVNASPGLEGI------EKTT-GIDIAGKMIRWIERHATT 292 (300)
T ss_pred ----HHHHHHHHHHHHHhCCC-EEEEEEEEcC-CC-cEEEEEECCCChhhh------HHHH-CcCHHHHHHHHHHHhccc
Confidence 45789999999999997 9999999984 56 899999999999853 2222 334555667777777777
Q ss_pred cc
Q 004630 739 RF 740 (741)
Q Consensus 739 r~ 740 (741)
||
T Consensus 293 ~~ 294 (300)
T PRK10446 293 EY 294 (300)
T ss_pred cc
Confidence 76
No 21
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.97 E-value=4e-29 Score=276.80 Aligned_cols=217 Identities=13% Similarity=0.155 Sum_probs=163.1
Q ss_pred CccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhH
Q 004630 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~ 501 (741)
.+-++|+. |||++|++||.+||||+||++.++++||||..+|++ ++++|||||++..+...+. ++
T Consensus 106 ~~~~~fl~------~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l---~~~aGIPtpp~~~~~~~~~-----ee- 170 (493)
T PRK06524 106 GGKACFVM------FDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRL---ANEAGVPSVPHVLGRVDSY-----DE- 170 (493)
T ss_pred CCceEEec------CCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHH---HHHcCCCCCCcccccCCCH-----HH-
Confidence 34577776 499999999999999999999999999999999998 8999999999987643221 12
Q ss_pred HHHHHhh--cCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 502 WHELTSK--LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 502 ~~~~~~~--lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
+....+. + +|||||||+.+|||+|+++|++.+||.. +++.++. .+.++||+||+
T Consensus 171 l~~~~~~~~I-GyPvVVKP~~GGSS~GV~~Vkn~eELe~---a~~~~~~--------------------~~~viVEe~I~ 226 (493)
T PRK06524 171 LSALAHGAGL-GDDLVVQTPYGDSGSTTFFVRGQRDWDK---YAGGIVG--------------------QPEIKVMKRIR 226 (493)
T ss_pred HHHHHHhccC-CCcEEEEECCCCCCcCEEEeCCHHHHHH---HHHHhcC--------------------CCCEEEEeccC
Confidence 2223333 8 6999999999999999999999999885 4454432 25799999999
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCc-eEEcCCCCCCCC
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG-INLTPPPASIMS 658 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~-~~~~Pa~~~~l~ 658 (741)
|+ |++|.++.+....+..+...++....++.. |.++.. ..++|+. ++
T Consensus 227 Gr-------------------------EitVev~vd~dG~Vv~~~~~e~vg~~Ei~~----yr~G~~~~~i~PA~---L~ 274 (493)
T PRK06524 227 NV-------------------------EVCIEACVTRHGTVIGPAMTSLVGYPELTP----YRGGWCGNDIWPGA---LP 274 (493)
T ss_pred cE-------------------------EEEEEEEEeCCCCEEeccccccccceEEEE----ccCCeEEEEEccCC---CC
Confidence 86 888876654322211111111111111222 333322 3577886 68
Q ss_pred HHHHHHHHHHHHHHHHHc---CCcceeEEEEEEEcCCCcEEEEecCCCCCC-CCC
Q 004630 659 TEALDKCKQRIELIANAL---QLEGFSRIDAFVNVDNGEVLIIEVNTVPGM-TPS 709 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aL---g~~G~~rvDf~v~~~~g~~~viEINt~Pg~-t~~ 709 (741)
+++.++++++|++++++| ||.|++|||||++.++|++||+||||+|+- ++.
T Consensus 275 ~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~tpm 329 (493)
T PRK06524 275 PAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNPRLSGASPM 329 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeCCccccccc
Confidence 999999999999999998 899999999999854589999999999986 453
No 22
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.97 E-value=2.5e-29 Score=274.61 Aligned_cols=200 Identities=22% Similarity=0.317 Sum_probs=163.3
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||||+|..+...+ ++. .+ ..+||+||||+.+|+|+||+++++.+|+..++..++ .+++.+||
T Consensus 140 l~~~GIp~p~~~~~~~~~----~~~--~~-----~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~--~~~~~vlV 206 (343)
T PRK14568 140 AKNAGIATPAFWTVTADE----RPD--AA-----TLTYPVFVKPARSGSSFGVSKVNSADELDYAIESAR--QYDSKVLI 206 (343)
T ss_pred HHHcCcCcCCEEEEECCc----hhh--hh-----hcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEE
Confidence 467999999999987654 221 11 356799999999999999999999999877776654 46778999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCC---CCCeEEEcCCCCCHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLP---TQQVAYHTPPRFPIVVINS 157 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~---~~~~~~~~P~~~~~~~~~~ 157 (741)
|+||+| +|++|.+++++. ...+..+.++.. .+++|+|..||.. .....+.+|+.+++++.++
T Consensus 207 Ee~I~G-~E~sv~vl~~~~----~~~~~~~~~i~~----------~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~ 271 (343)
T PRK14568 207 EEAVVG-SEVGCAVLGNGA----DLVVGEVDQIRL----------SHGFFRIHQENEPEKGSENSTIIVPADISAEERSR 271 (343)
T ss_pred ECCcCC-EEEEEEEEcCCC----CcceecceEEec----------CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHH
Confidence 999998 999999996321 122333333331 3467888777643 1224567899999999999
Q ss_pred HHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHH
Q 004630 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237 (741)
Q Consensus 158 i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~ 237 (741)
|+++|.+++++||++|++|+||++ +++|++||+|||++|||+++|.+|++++++|++|++|+.
T Consensus 272 i~~~a~~~~~~Lg~~G~~rvDf~l-----------------~~~g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~ 334 (343)
T PRK14568 272 VQETAKAIYRALGCRGLARVDMFL-----------------QEDGTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELID 334 (343)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEEE-----------------eCCCCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999997 568999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 004630 238 TIIGHACS 245 (741)
Q Consensus 238 ~ii~~a~~ 245 (741)
+||..|++
T Consensus 335 ~li~~a~~ 342 (343)
T PRK14568 335 RLVSLALT 342 (343)
T ss_pred HHHHHHhc
Confidence 99999863
No 23
>PLN02735 carbamoyl-phosphate synthase
Probab=99.97 E-value=2.3e-28 Score=299.37 Aligned_cols=229 Identities=20% Similarity=0.226 Sum_probs=180.8
Q ss_pred ccCccEEEEccCCCCCCchHH----HHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccC
Q 004630 420 KENQATVFIAVHGGIGEDGTL----QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK 495 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~i----q~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~ 495 (741)
++.+|.|||.+||..|+++.+ |++|+.+||||+|+++.++++|+||..+|++ |+++|||+|++..+.+.+
T Consensus 96 ~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~---l~~~GIpvp~~~~v~s~e--- 169 (1102)
T PLN02735 96 KERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQA---MEKIGLKTPPSGIATTLD--- 169 (1102)
T ss_pred HhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHH---HHHCCCCCCCeeEeCCHH---
Confidence 457899999999999999877 7999999999999999999999999999998 999999999998886432
Q ss_pred CchhhHHHHHHhhcCC-CcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEE
Q 004630 496 TPIVDIWHELTSKLQC-KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574 (741)
Q Consensus 496 ~~~~~~~~~~~~~lg~-~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlV 574 (741)
...++.+++ + ||+||||+.+++|.|+.+|+|.+||.. +++.++.. .+++.+||
T Consensus 170 -----ea~~~~~~i-G~yPvVVKP~~~~GG~Gv~iv~n~eEL~~---a~~~a~~~-----------------s~~~~VLV 223 (1102)
T PLN02735 170 -----ECFEIAEDI-GEFPLIIRPAFTLGGTGGGIAYNKEEFET---ICKAGLAA-----------------SITSQVLV 223 (1102)
T ss_pred -----HHHHHHHHh-CCCCEEEEeCCCCCCCceEEECCHHHHHH---HHHHHHhc-----------------CCCCeEEE
Confidence 123445677 5 999999999999999999999999984 55555432 12578999
Q ss_pred eecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCC
Q 004630 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPP 653 (741)
Q Consensus 575 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~ 653 (741)
|+||.|. +|+++.++++. +....++ .++. +++.. ++.|.+..+.|+.
T Consensus 224 Ee~I~G~------------------------kE~ev~Vl~D~~g~~i~v~-~ie~------~dp~g-vh~G~s~~vaPa~ 271 (1102)
T PLN02735 224 EKSLLGW------------------------KEYELEVMRDLADNVVIIC-SIEN------IDPMG-VHTGDSITVAPAQ 271 (1102)
T ss_pred EEecCCC------------------------eEEEEEEEEcCCCCEEEEe-eEEE------EcCCc-cccCCEEEEEeCC
Confidence 9999984 59999999864 3333332 2222 22222 3345556667774
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC-cceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHH
Q 004630 654 ASIMSTEALDKCKQRIELIANALQL-EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716 (741)
Q Consensus 654 ~~~l~~e~~~~i~~~a~~~~~aLg~-~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a 716 (741)
. ++++..++++++|.+++++||+ .|++||||++++++|++||+||||+++ .+|.+...|
T Consensus 272 t--L~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g~~~ViEVNPR~s--~ss~l~s~a 331 (1102)
T PLN02735 272 T--LTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVS--RSSALASKA 331 (1102)
T ss_pred C--CCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCCcEEEEEecCCCC--Ccchhhhhh
Confidence 2 7899999999999999999999 599999999985468999999997666 455455444
No 24
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.96 E-value=7.6e-29 Score=298.94 Aligned_cols=212 Identities=24% Similarity=0.217 Sum_probs=172.2
Q ss_pred CccCCCCCCCeEEEecCccc---hhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCe
Q 004630 1 MSKQGFITVPSFLLQGSEVN---ESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR 77 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~ 77 (741)
|+++|||||+|..+...++. ...+.++.+. ++||+||||+.+|+|+||++|++.+|+.+++.+++ .+++.
T Consensus 576 l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~--~~~~~ 648 (809)
T PRK14573 576 ASDVGVPVVPYQPLTLAGWKREPELCLAHIVEA-----FSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAF--LYDTD 648 (809)
T ss_pred HHHCCCCCCCEEEEechhcccChHHHHHHHHHh-----cCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHH--hcCCc
Confidence 46799999999998754321 1122333333 45699999999999999999999999988888776 35778
Q ss_pred EEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCC--CeEEEcCCCCCHHHH
Q 004630 78 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ--QVAYHTPPRFPIVVI 155 (741)
Q Consensus 78 vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~P~~~~~~~~ 155 (741)
+|||||+.|++|++|.++++..+ ..++.++.|+. + ...+++|.+||...+ .....+|+++++++.
T Consensus 649 vlVEe~i~~grEi~v~vl~~~~~---~~~~~~~~e~~--~--------~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~ 715 (809)
T PRK14573 649 VFVEESRLGSREIEVSCLGDGSS---AYVIAGPHERR--G--------SGGFIDYQEKYGLSGKSSAQIVFDLDLSKESQ 715 (809)
T ss_pred EEEEeccCCCEEEEEEEEeCCCC---ceEeccceEEc--c--------CCCeeCchhcccCCCCCceEEecCCCCCHHHH
Confidence 99999987669999999975321 12233445542 1 346899999995332 134457999999999
Q ss_pred HHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHH
Q 004630 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 235 (741)
Q Consensus 156 ~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~l 235 (741)
++|+++|.+++++|||+|++||||++ +++|++||+||||+|||++.|.+|.+|++.|++|++|
T Consensus 716 ~~i~~~a~~~~~aLg~~G~~riDf~v-----------------~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~l 778 (809)
T PRK14573 716 EQVLELAERIYRLLQGKGSCRIDFFL-----------------DEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQI 778 (809)
T ss_pred HHHHHHHHHHHHHhCCceEEEEEEEE-----------------cCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999998 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 004630 236 LRTIIGHACSRFPN 249 (741)
Q Consensus 236 l~~ii~~a~~r~~~ 249 (741)
+.+||..|++|+..
T Consensus 779 i~~ii~~a~~r~~~ 792 (809)
T PRK14573 779 VHQLIIDGLHKFDQ 792 (809)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999854
No 25
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.96 E-value=1.1e-28 Score=264.31 Aligned_cols=190 Identities=21% Similarity=0.273 Sum_probs=155.6
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||||++..+.... . ..+ ..+||+||||+.+|+|+||+++++.+|+..++..+. .+ +.+||
T Consensus 106 l~~~gIptp~~~~~~~~~----~---~~~-----~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~--~~-~~~lv 170 (296)
T PRK14569 106 LMHHRMPTPMAKFLTDKL----V---AED-----EISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEAS--KY-GEVMI 170 (296)
T ss_pred HHHCCCCCCCeEEEchhh----h---hHh-----hcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHH--hc-CCEEE
Confidence 467999999998775421 1 112 356799999999999999999999999887776653 23 47999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~ 160 (741)
|+||+| +||+|.++++ +..+. . .+.+ ...+++|..||... ..+.+|+.++++..+++++
T Consensus 171 EefI~G-~E~tv~vl~~----~~~~~----~--~i~~--------~~~~~~~~~k~~~~--~~~~~P~~l~~~~~~~i~~ 229 (296)
T PRK14569 171 EQWVTG-KEITVAIVND----EVYSS----V--WIEP--------QNEFYDYESKYSGK--SIYHSPSGLCEQKELEVRQ 229 (296)
T ss_pred Eccccc-EEEEEEEECC----cCcce----E--EEec--------CCCcCChhhccCCC--cEEEeCCCCCHHHHHHHHH
Confidence 999998 9999999952 11111 1 1222 33577888888643 4567899999999999999
Q ss_pred HHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHHH
Q 004630 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240 (741)
Q Consensus 161 ~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ii 240 (741)
+|.+++++||++|++||||++ +++|++||+||||+|||++.|.+|.+++++|++|++|+..||
T Consensus 230 ~a~~~~~~Lg~~G~~rvD~~~-----------------~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 230 LAKKAYDLLGCSGHARVDFIY-----------------DDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRII 292 (296)
T ss_pred HHHHHHHHhCCceEEEEEEEE-----------------cCCCCEEEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999997 467899999999999999999999999999999999999999
Q ss_pred HHH
Q 004630 241 GHA 243 (741)
Q Consensus 241 ~~a 243 (741)
+.|
T Consensus 293 ~~a 295 (296)
T PRK14569 293 EQA 295 (296)
T ss_pred Hhc
Confidence 876
No 26
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.96 E-value=4.8e-28 Score=259.85 Aligned_cols=194 Identities=25% Similarity=0.296 Sum_probs=161.7
Q ss_pred CCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeec
Q 004630 4 QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELF 83 (741)
Q Consensus 4 ~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~ 83 (741)
+|||||+|..+.... . . ...+||+||||+.+++|+||.+++|.+|+.+++.+.+. ..+.+|||||
T Consensus 105 ~~ip~p~~~~~~~~~----~----~-----~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--~~~~vlVEey 169 (299)
T PRK14571 105 GTVEIPDFVEIKEFM----K----T-----SPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLP--RYGSVIVQEY 169 (299)
T ss_pred cCCCCCCEEEEechh----h----h-----hhcCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHh--hCCcEEEEcc
Confidence 589999998875321 1 1 13567999999999999999999999998777766553 3458999999
Q ss_pred cCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHH
Q 004630 84 LEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 163 (741)
Q Consensus 84 i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~ 163 (741)
|+| +|++|.+++++. ...++++.|+.. ...+++|..||..+. ..+.+|+.+++++.++|+++|.
T Consensus 170 I~G-~E~sv~vl~~~~----~~~vl~~~e~~~----------~~~~~~~~~k~~~g~-~~~~~p~~l~~~~~~~i~~~a~ 233 (299)
T PRK14571 170 IPG-REMTVSILETEK----GFEVLPILELRP----------KRRFYDYVAKYTKGE-TEFILPAPLNPEEERLVKETAL 233 (299)
T ss_pred ccc-eEEEEEEEcCCC----CeeeeceEEEec----------CCCccccccccCCCC-eeEEeCCCCCHHHHHHHHHHHH
Confidence 997 999999997432 234566655432 345778888987654 5667899999999999999999
Q ss_pred HHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHHHHHH
Q 004630 164 LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIGHA 243 (741)
Q Consensus 164 ~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ii~~a 243 (741)
+++++||++|++||||++ + +|++||+||||+|||++.|.+|.+|++.|+||.+|+.+||..|
T Consensus 234 ~~~~~lg~~g~~rvD~~~-----------------~-~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a 295 (299)
T PRK14571 234 KAFVEAGCRGFGRVDGIF-----------------S-DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSA 295 (299)
T ss_pred HHHHHhCCCceEEEEEEE-----------------E-CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999987 3 5789999999999999999999999999999999999999999
Q ss_pred Hhh
Q 004630 244 CSR 246 (741)
Q Consensus 244 ~~r 246 (741)
++|
T Consensus 296 ~~~ 298 (299)
T PRK14571 296 FLK 298 (299)
T ss_pred Hhc
Confidence 876
No 27
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.95 E-value=1.4e-26 Score=249.05 Aligned_cols=198 Identities=27% Similarity=0.374 Sum_probs=164.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|++..+.+.+ ++..++++ .+||+||||..+++|+||.++++.+++.+.+..+. .+.+.+||
T Consensus 106 l~~~gIp~p~~~~~~~~~----~~~~~~~~-----~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~--~~~~~~lv 174 (304)
T PRK01372 106 WQAAGLPTPPWIVLTREE----DLLAAIDK-----LGLPLVVKPAREGSSVGVSKVKEEDELQAALELAF--KYDDEVLV 174 (304)
T ss_pred HHHCCCCCCCEEEEeCcc----hHHHHHhh-----cCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHH--hcCCcEEE
Confidence 467999999999998876 44444443 45699999999999999999999999877666553 35678999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~ 160 (741)
|+||+| +||+|.++++ ...++ .++. . ..++++|..|+..+. ....+|..++.+..+++++
T Consensus 175 Ee~i~G-~E~~v~vi~~----~~~~~----~~~~--~--------~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~~l~~ 234 (304)
T PRK01372 175 EKYIKG-RELTVAVLGG----KALPV----IEIV--P--------AGEFYDYEAKYLAGG-TQYICPAGLPAEIEAELQE 234 (304)
T ss_pred EcccCC-EEEEEEEECC----Cccce----EEEE--e--------cCCEEeeeccccCCC-eEEEeCCCCCHHHHHHHHH
Confidence 999997 9999999952 22222 2332 1 334678888887664 4567788899999999999
Q ss_pred HHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHHH
Q 004630 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240 (741)
Q Consensus 161 ~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ii 240 (741)
++.+++++||++|++++||++ +.+|++||+|+||+||+++.+.++.+++.+|+||.+++.+||
T Consensus 235 ~a~~~~~~lg~~g~~~iD~~~-----------------~~~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~ii 297 (304)
T PRK01372 235 LALKAYRALGCRGWGRVDFML-----------------DEDGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRIL 297 (304)
T ss_pred HHHHHHHHhCCcceEEEEEEE-----------------cCCCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999987 567999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 004630 241 GHACSR 246 (741)
Q Consensus 241 ~~a~~r 246 (741)
.+|+.|
T Consensus 298 ~~a~~~ 303 (304)
T PRK01372 298 EDALCD 303 (304)
T ss_pred HHHhhc
Confidence 999876
No 28
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=9.2e-27 Score=248.79 Aligned_cols=205 Identities=22% Similarity=0.271 Sum_probs=171.2
Q ss_pred ccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEe
Q 004630 2 SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVE 81 (741)
Q Consensus 2 ~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVE 81 (741)
+..|+|++++..++..++....+.+.. ...+||+||||...+||.|++++++.+|+..++..++ .+++++++|
T Consensus 112 ~~~g~~~a~~~~~~~~~~~~~~~e~~~-----~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~--~~d~~vl~e 184 (317)
T COG1181 112 KAEGLPVAPYVALTRDEYSSVIVEEVE-----EGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAF--KYDRDVLRE 184 (317)
T ss_pred HHCCCCccceeeeecccchhHHHHHhh-----cccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHH--HhCCceeec
Confidence 568999999999987643111122222 2456799999999999999999999999766444443 578899999
Q ss_pred eccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHHH
Q 004630 82 LFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREG 161 (741)
Q Consensus 82 e~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~ 161 (741)
+|+.| +|++|.++++. . .+.+++++||... ...||+|++||..++...+.+|+++++++.++++++
T Consensus 185 ~~~~~-rei~v~vl~~~---~-~~~~l~~~eI~~~---------~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~l 250 (317)
T COG1181 185 QGITG-REIEVGVLGND---Y-EEQALPLGEIPPK---------GEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKEL 250 (317)
T ss_pred cCCCc-ceEEEEecCCc---c-cceecCceEEecC---------CCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHH
Confidence 99997 99999999632 2 4567888877521 468999999999955578899999999999999999
Q ss_pred HHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHHHH
Q 004630 162 ASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTIIG 241 (741)
Q Consensus 162 a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ii~ 241 (741)
|.+++++|||+|++|+||+++ +.+|++|++|||++|||+++|++|.++++.|++|.+|+..++.
T Consensus 251 A~~a~~alg~~g~~rvDf~~~----------------~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e 314 (317)
T COG1181 251 ALRAYKALGCLGLARVDFFVD----------------DDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLRFVE 314 (317)
T ss_pred HHHHHHhcCCCceEEEEEEEE----------------CCCCCEEEEEEeCCCCCcccccchhhHHHcCCCHHHHHHHHHh
Confidence 999999999999999999983 1368899999999999999999999999999999999999988
Q ss_pred HH
Q 004630 242 HA 243 (741)
Q Consensus 242 ~a 243 (741)
.|
T Consensus 315 ~a 316 (317)
T COG1181 315 LA 316 (317)
T ss_pred hc
Confidence 65
No 29
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.95 E-value=3.3e-26 Score=247.31 Aligned_cols=200 Identities=27% Similarity=0.414 Sum_probs=159.2
Q ss_pred CccCCCCCCCeEEEe-cCccchhhh--hhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCe
Q 004630 1 MSKQGFITVPSFLLQ-GSEVNESEL--SNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDR 77 (741)
Q Consensus 1 l~~~GIp~p~~~~~~-~~~~~~~~l--~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~ 77 (741)
|+++|||||++..+. +.+ ...++ .++.. ..+||+||||..+++|+||.+++|.+++..++..++ .+++.
T Consensus 113 l~~~gip~p~~~~~~~~~~-~~~~~~~~~~~~-----~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~--~~~~~ 184 (315)
T TIGR01205 113 WKALGLPTPDYIVLTQNRA-SADELECEQVAE-----PLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAF--EYDEE 184 (315)
T ss_pred HHHCCCCCCCEEEEecccc-cchhhhHHHHHH-----hcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH--hcCCc
Confidence 468999999999887 432 11121 12222 346799999999999999999999999877776654 35678
Q ss_pred EEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHH
Q 004630 78 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157 (741)
Q Consensus 78 vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~ 157 (741)
+|||+||+| +|++|.+++++ +..+++....+ ...+++|..||..+. ....+|+.+++++.++
T Consensus 185 ~lvEe~i~G-~e~~v~vi~~~---~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~ 246 (315)
T TIGR01205 185 VLVEQFIKG-RELEVSILGNE---EALPIIEIVPE-------------IEGFYDYEAKYLDGS-TEYVIPAPLDEELEEK 246 (315)
T ss_pred EEEEcCCCC-EEEEEEEECCC---CccceEEecCC-------------CCCeeCcccccCCCC-eeEEeCCCCCHHHHHH
Confidence 999999997 99999999632 22233211111 122667788887665 5567888999999999
Q ss_pred HHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHH
Q 004630 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237 (741)
Q Consensus 158 i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~ 237 (741)
|+++|.+++++||++|+++|||++ +++|++||+||||+||+++.|.+|.+++++|++|.+++.
T Consensus 247 i~~~a~~~~~~lg~~G~~~vD~~~-----------------~~~g~~~viEvN~~pg~~~~s~~~~~~~~~G~~~~~l~~ 309 (315)
T TIGR01205 247 IKELALKAYKALGCRGLARVDFFL-----------------DEEGEIYLNEINTIPGMTAISLFPKAAAAAGIEFSQLVE 309 (315)
T ss_pred HHHHHHHHHHHhCCCceEEEEEEE-----------------eCCCCEEEEEeeCCCCCCCccHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999987 567899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004630 238 TIIGHA 243 (741)
Q Consensus 238 ~ii~~a 243 (741)
.||..|
T Consensus 310 ~ii~~~ 315 (315)
T TIGR01205 310 RILELA 315 (315)
T ss_pred HHHhcC
Confidence 999764
No 30
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.94 E-value=1.3e-25 Score=251.27 Aligned_cols=245 Identities=14% Similarity=0.152 Sum_probs=182.4
Q ss_pred cCccEEEEccCCCCCCchHHHHHH---HHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCc
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLL---EAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 497 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lL---E~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~ 497 (741)
..+|+|++ ..|++.++++. +.+|+|+.|++..++++++||..+|++ |+++|||||+|..+...+
T Consensus 67 ~~iD~Vv~-----g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~---l~~~gIpt~~~~~~~~~~----- 133 (426)
T PRK13789 67 NPFDLIVV-----GPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSL---MKEAKIPTASYKTFTEYS----- 133 (426)
T ss_pred cCCCEEEE-----CCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHH---HHHcCCCCCCeEeeCCHH-----
Confidence 45899997 35888777554 559999999999999999999999999 999999999998876432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeec
Q 004630 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577 (741)
Q Consensus 498 ~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEef 577 (741)
.+.++.+++ +||+||||..+++|+||.++++.+|+.. +++.++... .++. .+..+|||||
T Consensus 134 ---ea~~~~~~~-~~PvVVKp~~~~~gkGV~vv~~~eel~~---a~~~~~~~~---~~g~----------~~~~vlIEEf 193 (426)
T PRK13789 134 ---SSLSYLESE-MLPIVIKADGLAAGKGVTVATEKKMAKR---ALKEIFKDK---KFGQ----------SGNQVVIEEF 193 (426)
T ss_pred ---HHHHHHHhc-CCCEEEEeCCCCCCCcEEEECCHHHHHH---HHHHHHhhc---cccC----------CCCeEEEEEC
Confidence 223445678 6999999999999999999999999885 555554320 0000 1358999999
Q ss_pred ccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 578 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
|+|+ |+++.++.+++....+++ .+ ....+|+++.+++.+.+..++|++. +
T Consensus 194 l~G~-------------------------E~Sv~~~~dg~~~~~lp~-~~--d~k~~~d~d~g~~tggmg~~~P~p~--~ 243 (426)
T PRK13789 194 MEGQ-------------------------EASIFAISDGDSYFLLPA-AQ--DHKRAFDGDQGPNTGGMGAYCPAPV--I 243 (426)
T ss_pred cCCe-------------------------EEEEEEEECCCEEEEccc-eE--ecccccCCCCCCCCCCceEEeeCCC--C
Confidence 9997 999999886544333433 32 1246788888888777777888874 6
Q ss_pred CHHHHHHHHH-HHHHHH---HHcC--CcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHH
Q 004630 658 STEALDKCKQ-RIELIA---NALQ--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRK 731 (741)
Q Consensus 658 ~~e~~~~i~~-~a~~~~---~aLg--~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~ 731 (741)
++++.+++++ ++++++ +++| ++|+.++|||++. +|++||+|+|++||.+.+..+-++ .-.+|++.
T Consensus 244 ~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g~~~vlE~n~R~Gdpe~~~ll~~--------l~~dl~~~ 314 (426)
T PRK13789 244 TEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EGEPKVVEFNCRFGDPETQCVLAM--------LDGDLLEL 314 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCCEEEEEEecCCCCcHhhhhhcc--------CCCCHHHH
Confidence 8888888865 445555 5545 6899999999995 688999999999998766433221 11367766
Q ss_pred HHHHHH
Q 004630 732 VLDLGS 737 (741)
Q Consensus 732 li~~a~ 737 (741)
++..+.
T Consensus 315 ~~~~~~ 320 (426)
T PRK13789 315 LYAAST 320 (426)
T ss_pred HHHHHc
Confidence 665554
No 31
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.94 E-value=6.8e-25 Score=253.06 Aligned_cols=210 Identities=19% Similarity=0.146 Sum_probs=162.7
Q ss_pred ccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHH
Q 004630 423 QATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 502 (741)
Q Consensus 423 ~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~ 502 (741)
.|++....+... ...+ ..|+..|+| ++++..+..+|+||..+|++ |+++|||+|+|..+...+ .+
T Consensus 84 ~dvIt~e~e~v~--~~~l-~~le~~gi~-v~ps~~al~i~~DK~~~K~~---l~~~GIptp~~~~v~~~~--------el 148 (577)
T PLN02948 84 CDVLTVEIEHVD--VDTL-EALEKQGVD-VQPKSSTIRIIQDKYAQKVH---FSKHGIPLPEFMEIDDLE--------SA 148 (577)
T ss_pred CCEEEEecCCCC--HHHH-HHHHhcCCc-cCCCHHHHHHhcCHHHHHHH---HHHCCcCCCCeEEeCCHH--------HH
Confidence 688876654432 2233 788999998 58999999999999999998 999999999999886432 23
Q ss_pred HHHHhhcCCCcEEEecCCCC-CCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 503 HELTSKLQCKTLCVKPARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 503 ~~~~~~lg~~PvvVKP~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
.++.+++ +||+||||+++| +|+|++++++.+||.. +++.++.+ +..++||+||++.
T Consensus 149 ~~~~~~i-g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~---a~~~~~~~-------------------~~~vlvEefI~~~ 205 (577)
T PLN02948 149 EKAGDLF-GYPLMLKSRRLAYDGRGNAVAKTEEDLSS---AVAALGGF-------------------ERGLYAEKWAPFV 205 (577)
T ss_pred HHHHHhc-CCcEEEEeCCCCCCCCCeEEECCHHHHHH---HHHHhhCC-------------------CCcEEEEecCCCC
Confidence 4455678 699999999988 5999999999999884 55555443 4689999999984
Q ss_pred chhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHH
Q 004630 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660 (741)
Q Consensus 582 ~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e 660 (741)
+|++|.++++. |...+. |..+......+++ ..+.|+. ++++
T Consensus 206 ------------------------~EisV~v~r~~~G~i~~~-p~~E~~~~~~~~~----------~~~~Pa~---l~~~ 247 (577)
T PLN02948 206 ------------------------KELAVMVARSRDGSTRCY-PVVETIHKDNICH----------VVEAPAN---VPWK 247 (577)
T ss_pred ------------------------eEEEEEEEECCCCCEEEe-cCcccEEECCeeE----------EEEECCC---CCHH
Confidence 59999999754 333332 3222222222221 2256876 6899
Q ss_pred HHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCC
Q 004630 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 661 ~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~ 709 (741)
+.++++++|.+++++|++.|++|||||++. +|++|||||||+||.|.+
T Consensus 248 ~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~v~v~EInpRpg~sGh 295 (577)
T PLN02948 248 VAKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQILLNEVAPRPHNSGH 295 (577)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCcEEEEEEeCCCCCCCc
Confidence 999999999999999999999999999995 689999999999997664
No 32
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.94 E-value=7.1e-25 Score=269.64 Aligned_cols=229 Identities=20% Similarity=0.204 Sum_probs=177.0
Q ss_pred ccCccEEEEccCCCCCCchH----HHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccC
Q 004630 420 KENQATVFIAVHGGIGEDGT----LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK 495 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~----iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~ 495 (741)
++.+|.++|.++|..|.+.. -+++|+.+|+++.|+++.+..+|+||..+|++ |+++|||+|++..+...+
T Consensus 79 ~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~---l~~~Gipvp~~~~v~s~~--- 152 (1050)
T TIGR01369 79 KERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREA---MKEIGEPVPESEIAHSVE--- 152 (1050)
T ss_pred HhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHH---HHHCCCCCCCeeecCCHH---
Confidence 35689999999998887654 37899999999999999999999999999998 999999999998886532
Q ss_pred CchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEe
Q 004630 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575 (741)
Q Consensus 496 ~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVE 575 (741)
.+.++.+++ +||+||||+.+++|.|+.+|++.+||.+ ++..++... +...+|||
T Consensus 153 -----e~~~~~~~i-gyPvIVKP~~g~gg~Gv~iv~~~eeL~~---~~~~~~~~s-----------------~~~~vlVE 206 (1050)
T TIGR01369 153 -----EALAAAKEI-GYPVIVRPAFTLGGTGGGIAYNREELKE---IAERALSAS-----------------PINQVLVE 206 (1050)
T ss_pred -----HHHHHHHHh-CCCeEEECCCCCCCCCeEEECCHHHHHH---HHHHHHhcC-----------------CCCcEEEE
Confidence 233455678 6999999999999999999999999884 445554331 13689999
Q ss_pred ecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCC-CceecCceEEEccCCccccccccccCCCceEEcCCCC
Q 004630 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654 (741)
Q Consensus 576 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~-~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~ 654 (741)
+||+|. +|+++.++.+.. ....++ .++. ++.... +.+.+..+.|+..
T Consensus 207 e~I~G~------------------------~Eiev~v~rd~~g~~~~~~-~~e~------~~p~gv-h~g~~i~v~Pa~t 254 (1050)
T TIGR01369 207 KSLAGW------------------------KEIEYEVMRDSNDNCITVC-NMEN------FDPMGV-HTGDSIVVAPSQT 254 (1050)
T ss_pred EcccCc------------------------eEEEEEEEEeCCCCEEEEe-ecee------ccCcce-ecCceEEEecCCC
Confidence 999995 599999987643 332222 2211 222222 2334445567642
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHH
Q 004630 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716 (741)
Q Consensus 655 ~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a 716 (741)
++++..++++++|.+++++||+.|.++|||++++++|++|||||||+++- ++.+..|+
T Consensus 255 --l~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g~~~viEiNPR~~~--s~~l~s~a 312 (1050)
T TIGR01369 255 --LTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRVSR--SSALASKA 312 (1050)
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCCcEEEEEeecCcCc--chhhhhHH
Confidence 68889999999999999999999999999999965688999999988864 33344443
No 33
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.94 E-value=6.5e-25 Score=270.11 Aligned_cols=229 Identities=18% Similarity=0.206 Sum_probs=177.9
Q ss_pred ccCccEEEEccCCCCCCchHH----HHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccC
Q 004630 420 KENQATVFIAVHGGIGEDGTL----QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK 495 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~i----q~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~ 495 (741)
++.+|.|+|.+||..|.+..+ ++.|+.+|+++.|++..+..+|.||..+|++ |+++|||+|++..+.+.+
T Consensus 80 ~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~---l~~~GIpvp~~~~v~s~e--- 153 (1068)
T PRK12815 80 REKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRAL---MKELGEPVPESEIVTSVE--- 153 (1068)
T ss_pred HhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHH---HHHcCcCCCCceeeCCHH---
Confidence 357899999999999988765 6789999999999999999999999999998 999999999999886532
Q ss_pred CchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEe
Q 004630 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575 (741)
Q Consensus 496 ~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVE 575 (741)
.+.++.+++ +||+||||+.+++|.|+.+|++.+||.. ++..++... +...+|||
T Consensus 154 -----e~~~~~~~i-gyPvVVKP~~g~gG~Gv~iv~~~eEL~~---a~~~~~~~s-----------------~~~~vLVE 207 (1068)
T PRK12815 154 -----EALAFAEKI-GFPIIVRPAYTLGGTGGGIAENLEELEQ---LFKQGLQAS-----------------PIHQCLLE 207 (1068)
T ss_pred -----HHHHHHHHc-CCCEEEEECcCCCCCceEEECCHHHHHH---HHHHHHhcC-----------------CCCeEEEE
Confidence 234456678 6999999999999999999999999885 444444321 13589999
Q ss_pred ecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCC
Q 004630 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654 (741)
Q Consensus 576 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~ 654 (741)
+||+|. +|+++.++.+. +....++ .++.... .....|.+..+.|+..
T Consensus 208 e~I~G~------------------------~E~sv~v~rD~~g~~~~~~-~~e~~~p-------~gi~tG~s~~v~Pa~~ 255 (1068)
T PRK12815 208 ESIAGW------------------------KEIEYEVMRDRNGNCITVC-NMENIDP-------VGIHTGDSIVVAPSQT 255 (1068)
T ss_pred EccCCC------------------------eEEEEEEEEcCCCCEEEEE-eceeccc-------ccccCCceEEEecCCC
Confidence 999995 59999999864 3333322 2221111 1123344455667632
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHH
Q 004630 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQA 716 (741)
Q Consensus 655 ~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a 716 (741)
++++..++++++|.+++++||+.|.++|||++++++|++||+||||+++ .++.+...|
T Consensus 256 --l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g~~~ViEINPR~~--~s~~l~~~a 313 (1068)
T PRK12815 256 --LTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLIEVNPRVS--RSSALASKA 313 (1068)
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCcEEEEEEecCcc--cchhhhhHh
Confidence 6889999999999999999999999999999996557899999996654 555555443
No 34
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.94 E-value=6.5e-25 Score=270.89 Aligned_cols=229 Identities=17% Similarity=0.194 Sum_probs=177.8
Q ss_pred ccCccEEEEccCCCCCCchHH----HHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccC
Q 004630 420 KENQATVFIAVHGGIGEDGTL----QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK 495 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~i----q~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~ 495 (741)
++.+|.|||.+||..|.+..+ ++.|+.+|+++.|++..+..+|+||..+|++ |+++|||+|++..+...+
T Consensus 80 ~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~---l~~~Gipvp~~~~v~s~~--- 153 (1066)
T PRK05294 80 KERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEA---MKKIGLPVPRSGIAHSME--- 153 (1066)
T ss_pred HHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHH---HHHCCcCCCCeeeeCCHH---
Confidence 356899999999999998766 6789999999999999999999999999998 999999999999886532
Q ss_pred CchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEe
Q 004630 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575 (741)
Q Consensus 496 ~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVE 575 (741)
.+.++.+++ +||+||||+.+++|.|+.+|++.+||.. +++.++... +...+|||
T Consensus 154 -----e~~~~~~~i-g~PvVVKP~~g~gg~Gv~iv~~~eeL~~---a~~~~~~~s-----------------~~~~vlvE 207 (1066)
T PRK05294 154 -----EALEVAEEI-GYPVIIRPSFTLGGTGGGIAYNEEELEE---IVERGLDLS-----------------PVTEVLIE 207 (1066)
T ss_pred -----HHHHHHHHc-CCCeEEEcCCCCCCCCeEEECCHHHHHH---HHHHHHhhC-----------------CCCeEEEE
Confidence 234456788 6999999999999999999999999885 444444320 13679999
Q ss_pred ecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCC
Q 004630 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655 (741)
Q Consensus 576 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~ 655 (741)
+||+|. +|+++.++.+........+.++. +++. .++.+....+.|+.
T Consensus 208 e~I~G~------------------------~Eisv~v~rd~~g~~~~~~~~e~------~dp~-gih~g~~~~~~Pa~-- 254 (1066)
T PRK05294 208 ESLLGW------------------------KEYEYEVMRDKNDNCIIVCSIEN------IDPM-GVHTGDSITVAPAQ-- 254 (1066)
T ss_pred EcccCc------------------------eEEEEEEEEcCCCCEEEEeeeee------cccc-ceecCCeEEEeCCC--
Confidence 999995 59999998764333222222221 1211 22334444556763
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHH
Q 004630 656 IMSTEALDKCKQRIELIANALQLE-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQ 715 (741)
Q Consensus 656 ~l~~e~~~~i~~~a~~~~~aLg~~-G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~ 715 (741)
.++++..++++++|.+++++||+. |+++|||++++++|++||+||||+++ .++.+..|
T Consensus 255 ~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g~~~viEiNPR~~--~s~~~~s~ 313 (1066)
T PRK05294 255 TLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVS--RSSALASK 313 (1066)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCCcEEEEEeecCCC--cceeeeeH
Confidence 268889999999999999999999 99999999996568999999998776 34444444
No 35
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=99.93 E-value=4.9e-27 Score=216.04 Aligned_cols=117 Identities=33% Similarity=0.341 Sum_probs=78.7
Q ss_pred eEEEEEecCCccceeeeeccHHHHHHhhhcCCCeeEEEEEEecCCCccCCCCCCCCCCCCCcccccccccccccccchHH
Q 004630 280 REVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTTEE 359 (741)
Q Consensus 280 ~~V~vlfGG~S~E~~vSl~sa~~v~~~l~~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 359 (741)
|||+|||||+|+||||||+||++|+++|++ ++|+|+||+|+++|.|+..... ...|.
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k~g~~~~~~~~---------~~~~~------------- 57 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDKDGRWYLGEGP---------EEYLD------------- 57 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETTTSCEEEEHHH---------CSHHH-------------
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecCCCCEEEcccc---------hhhcc-------------
Confidence 799999999999999999999999999975 8999999999998766542110 00000
Q ss_pred HHHhhhhccCCchhhhhccccchhhhhhhhccccCcccccccccccCccccchHHHHHHhccCccEEEEccCCCCCCchH
Q 004630 360 VLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGEDGT 439 (741)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEdg~ 439 (741)
... ..... ........ ....... .....+|+|||++||++||||+
T Consensus 58 ---~~~-~~~~~--------------------~~~~~~~~-~~~~~~~----------~~~~~~DvvFp~lHG~~GEDG~ 102 (117)
T PF01820_consen 58 ---NDD-DEEFS--------------------FKPLPEIS-ASLIEKN----------EQKLEVDVVFPVLHGPNGEDGT 102 (117)
T ss_dssp ---TTT-CCCHE--------------------ESSSCCEE-EEETTES----------TTCTTCSEEEEECCSTTTSSSH
T ss_pred ---cCc-hhhcc--------------------cccccccc-ccccccc----------cccccCCEEEEeccCCCCcccH
Confidence 000 00000 00000000 0000000 0134679999999999999999
Q ss_pred HHHHHHHcCCCccCC
Q 004630 440 LQSLLEAEGVPYTGP 454 (741)
Q Consensus 440 iq~lLE~~giPyvG~ 454 (741)
||++||++|||||||
T Consensus 103 iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 103 IQGLLELLGIPYVGC 117 (117)
T ss_dssp HHHHHHHTT-EBSSS
T ss_pred HHHHHHHcCCCCcCC
Confidence 999999999999997
No 36
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.93 E-value=1.2e-24 Score=243.62 Aligned_cols=245 Identities=14% Similarity=0.126 Sum_probs=176.5
Q ss_pred cCccEEEEccCCCCCCch---HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCc
Q 004630 421 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 497 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg---~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~ 497 (741)
..+|.|++. .|+. .+...|+.+|+|++|++..++++++||..+|++ |+++|||||+|..+.+.+
T Consensus 61 ~~id~vvvg-----~E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~---l~~~GIptp~~~~~~~~~----- 127 (434)
T PLN02257 61 WGVGLVVVG-----PEAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDL---CDKYKIPTAKYETFTDPA----- 127 (434)
T ss_pred cCCCEEEEC-----CchHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHH---HHHcCCCCCCeEEeCCHH-----
Confidence 456777744 2442 455667788999999999999999999999999 999999999998886432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeec
Q 004630 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577 (741)
Q Consensus 498 ~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEef 577 (741)
.+.++.+++ +||+||||..+++|+||.++++.+++.+ ++..++.. ..++ .....+|||+|
T Consensus 128 ---e~~~~~~~~-g~PvVVKp~~~~~GkGV~iv~~~~el~~---a~~~~~~~---~~fg----------~~~~~vlIEef 187 (434)
T PLN02257 128 ---AAKKYIKEQ-GAPIVVKADGLAAGKGVVVAMTLEEAYE---AVDSMLVK---GAFG----------SAGSEVVVEEF 187 (434)
T ss_pred ---HHHHHHHHc-CCCEEEEcCCCCCCCCEEEECCHHHHHH---HHHHHHhh---hhcc----------CCCCeEEEEEC
Confidence 234455678 6999999999999999999999999875 44443211 0000 01468999999
Q ss_pred ccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 578 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
|+|+ |+++.++.++. .. .|...+.....+|||+.+|+.+.+..+.|++. +
T Consensus 188 i~G~-------------------------E~Sv~~~~dG~-~~--~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~--l 237 (434)
T PLN02257 188 LDGE-------------------------EASFFALVDGE-NA--IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPV--L 237 (434)
T ss_pred CCCC-------------------------EEEEEEEECCC-cE--EEEEeeeecccccCCCCCCCCCCCeeEecCCC--C
Confidence 9997 99998776543 22 22223333457999999997766666777764 6
Q ss_pred CHHHHHHHHH-H---HHHHHHHcCCc--ceeEEEEEEEcCCCcEEEEecCCCCCCCCCc-hHHHHHHhcCCCCCHHHHHH
Q 004630 658 STEALDKCKQ-R---IELIANALQLE--GFSRIDAFVNVDNGEVLIIEVNTVPGMTPST-VLIHQALSEQPPMYPHQFFR 730 (741)
Q Consensus 658 ~~e~~~~i~~-~---a~~~~~aLg~~--G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S-~l~~~a~~a~~~~~p~~l~~ 730 (741)
++++.+++.+ . +.+++++.|+. |+.++||+++.++|++||+|+|++||++.+. .++. +-.+|++
T Consensus 238 ~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~---------l~~Dl~~ 308 (434)
T PLN02257 238 TPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMR---------LESDLAQ 308 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehh---------hcCCHHH
Confidence 8888887543 3 34556677775 8889999998335789999999999997442 2221 1136777
Q ss_pred HHHHHHH
Q 004630 731 KVLDLGS 737 (741)
Q Consensus 731 ~li~~a~ 737 (741)
.++..+.
T Consensus 309 ~~~~~~~ 315 (434)
T PLN02257 309 VLLAACK 315 (434)
T ss_pred HHHHHHc
Confidence 7766654
No 37
>PRK05586 biotin carboxylase; Validated
Probab=99.93 E-value=3.6e-24 Score=242.20 Aligned_cols=221 Identities=17% Similarity=0.260 Sum_probs=167.4
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEE--EeCccccCCch
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RRKEDLLKTPI 498 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~--v~~~e~~~~~~ 498 (741)
+.+|+++|.. |...|++.++.+++.+|+||+|++..++.+|+||..+|++ |+++|||+|++.. +...
T Consensus 73 ~~~d~i~p~~-~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~---l~~~GIpvp~~~~~~~~~~------- 141 (447)
T PRK05586 73 TGAQAIHPGF-GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREI---MIKAGVPVVPGSEGEIENE------- 141 (447)
T ss_pred cCCCEEEcCc-cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHH---HHHCCCCCCCCcccccCCH-------
Confidence 5689999985 8899999999999999999999999999999999999998 9999999999843 3321
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecc
Q 004630 499 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578 (741)
Q Consensus 499 ~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI 578 (741)
+.+.++.+++ +||+||||.++|+|+||.+|++.+||.+ +++.+.... . ..+ .++.++||+||
T Consensus 142 -~e~~~~~~~i-gyPvvvKP~~gggg~Gv~~v~~~~el~~---a~~~~~~~~------~----~~~---~~~~vivEe~i 203 (447)
T PRK05586 142 -EEALEIAKEI-GYPVMVKASAGGGGRGIRIVRSEEELIK---AFNTAKSEA------K----AAF---GDDSMYIEKFI 203 (447)
T ss_pred -HHHHHHHHHc-CCCEEEEECCCCCCCeeEEECCHHHHHH---HHHHHHHHH------H----Hhc---CCCeEEEEecC
Confidence 1233445678 6999999999999999999999999885 333332210 0 000 03679999999
Q ss_pred cCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 579 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
+|. +|+++.++++. |..+.+ +... ..+... ........|++. +
T Consensus 204 ~g~------------------------~ei~v~v~~d~~G~~~~~-~~~~-------~~~~~~--~~~~~~~~p~~~--l 247 (447)
T PRK05586 204 ENP------------------------KHIEFQILGDNYGNVVHL-GERD-------CSLQRR--NQKVLEEAPSPV--M 247 (447)
T ss_pred CCC------------------------eEEEEEEEECCCCCEEEE-ecee-------cceEec--ccceEEEcCCCC--C
Confidence 984 49999999864 333222 1110 000000 111223345533 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
++++.+++++.|.+++++||+.|.+++||++++ +|++||+||||++|.+
T Consensus 248 ~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 248 TEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGNFYFMEMNTRIQVE 296 (447)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCCEEEEEEECCCCCC
Confidence 899999999999999999999999999999985 6899999999999765
No 38
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.92 E-value=7e-24 Score=240.07 Aligned_cols=222 Identities=16% Similarity=0.243 Sum_probs=166.3
Q ss_pred ccCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeE--EEeCccccCCc
Q 004630 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTP 497 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~--~v~~~e~~~~~ 497 (741)
++.+|+++|.. |...|++.++..+|.+|+|++|++..++.+|+||..++++ |+++|||+|++. .+...
T Consensus 72 ~~~id~I~pg~-g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~---l~~~gip~pp~~~~~~~~~------ 141 (449)
T TIGR00514 72 ITGADAIHPGY-GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIET---MKKAGVPCVPGSDGLVEDE------ 141 (449)
T ss_pred HhCCCEEEeCC-CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccCcCCH------
Confidence 35789999974 7788999999999999999999999999999999999998 999999999975 22221
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeec
Q 004630 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577 (741)
Q Consensus 498 ~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEef 577 (741)
+.+..+.+++ +||+||||..+++|+||.++++.+||..+. +.+..... . .+ ....++||+|
T Consensus 142 --~e~~~~~~~i-g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~---~~~~~~~~-----~-----~~---~~~~vlvEe~ 202 (449)
T TIGR00514 142 --EENVRIAKRI-GYPVIIKATAGGGGRGMRVVREPDELVKSI---SMTRAEAK-----A-----AF---GNDGVYIEKY 202 (449)
T ss_pred --HHHHHHHHHh-CCCEEEEeCCCCCCCccEEECCHHHHHHHH---HHHHHHHH-----H-----hC---CCCCEEEEEC
Confidence 1233455678 699999999999999999999999998643 33321100 0 00 1467999999
Q ss_pred ccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCC
Q 004630 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASI 656 (741)
Q Consensus 578 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~ 656 (741)
|+|. +|+++.++++. +....+ +.. . ..+..++ .......|++.
T Consensus 203 i~g~------------------------~e~~v~v~~d~~g~~~~~-~~~----~---~~~~~~~--~~~~~~~p~~~-- 246 (449)
T TIGR00514 203 IENP------------------------RHVEIQVLADKYGNAIYL-GER----D---CSIQRRH--QKLLEEAPSPA-- 246 (449)
T ss_pred CCCC------------------------eEEEEEEEEcCCCCEEEE-ecc----c---cCceecc--cceEEECCCCC--
Confidence 9975 49999988864 332221 110 0 0111111 11122345432
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 657 l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
+++++.++|++.+.+++++||+.|++++||++++ +|++||+||||+++.+
T Consensus 247 l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 247 LTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGEFYFMEMNTRIQVE 296 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCCEEEEEEECCCCCC
Confidence 7899999999999999999999999999999985 6889999999999765
No 39
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.92 E-value=7.9e-24 Score=234.13 Aligned_cols=243 Identities=19% Similarity=0.174 Sum_probs=174.3
Q ss_pred cCccEEEEccCCCCCC-chHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchh
Q 004630 421 ENQATVFIAVHGGIGE-DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIV 499 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GE-dg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~ 499 (741)
..+|.|++... .+ -..+...|+..|+|++|++..++++|+||..+|++ |+++|||+|+|..+.+.+
T Consensus 26 ~~id~vi~g~E---~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~---l~~~gIptp~~~~~~~~~------- 92 (379)
T PRK13790 26 QNVDWVVIGPE---QPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKI---MEKYNIPTADYKEVERKK------- 92 (379)
T ss_pred hCCCEEEECCc---HHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHH---HHHCCCCCCCEEEECCHH-------
Confidence 46788885331 11 12445678889999999999999999999999998 999999999998876432
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 500 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 500 ~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+.+..+++ +||+||||..+++|+||.+|++.+++.+ +++.++... .+..+||||||+
T Consensus 93 -ea~~~~~~~-g~PvVvKp~~~~~gkGV~iv~~~~el~~---a~~~~~~~~-----------------~~~~vlvEe~i~ 150 (379)
T PRK13790 93 -DALTYIENC-ELPVVVKKDGLAAGKGVIIADTIEAARS---AIEIMYGDE-----------------EEGTVVFETFLE 150 (379)
T ss_pred -HHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHH---HHHHHHhcC-----------------CCCeEEEEEccc
Confidence 123344678 6999999999999999999999999874 555554210 135799999999
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCH
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~ 659 (741)
|+ |+++.++.+++....+.+.. .....+|+++.+++.+.+...+|++. +++
T Consensus 151 G~-------------------------E~sv~~~~~g~~~~~~~~~~--~~~kr~~~~d~g~~tgg~~~~~p~~~--l~~ 201 (379)
T PRK13790 151 GE-------------------------EFSLMTFVNGDLAVPFDCIA--QDHKRAFDHDEGPNTGGMGAYCPVPH--ISD 201 (379)
T ss_pred Cc-------------------------eEEEEEEeeCCEEEeccccc--ccccccccCCCCCcCCCCceEeeCCC--CCH
Confidence 97 99999887643222221111 11234778888887776667778753 577
Q ss_pred HHHHHH-HHHHHHHHHHcCC-----cceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHH
Q 004630 660 EALDKC-KQRIELIANALQL-----EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVL 733 (741)
Q Consensus 660 e~~~~i-~~~a~~~~~aLg~-----~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li 733 (741)
++.+++ ++++++++++|++ .|+.++||++++ +| +||+|+|++||-.....+- ..+-.+|++.++
T Consensus 202 ~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g-~~viEiN~R~G~pe~~~~~--------~~~~~Dl~~~~~ 271 (379)
T PRK13790 202 DVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG-PKVIEFNARFGDPEAQVLL--------SRMESDLMQHII 271 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC-eEEEEEEcccCCCcceeee--------cccCCCHHHHHH
Confidence 776666 7788888888843 577889999984 44 9999999999863322110 122246777777
Q ss_pred HHHH
Q 004630 734 DLGS 737 (741)
Q Consensus 734 ~~a~ 737 (741)
+.+.
T Consensus 272 ~~~~ 275 (379)
T PRK13790 272 DLDE 275 (379)
T ss_pred HHHc
Confidence 6654
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.91 E-value=3e-23 Score=234.86 Aligned_cols=222 Identities=17% Similarity=0.242 Sum_probs=165.2
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|+|+|.. |..+|+..++.++|.+|+|++|++..++.+|+||..||++ |+++|||+|++....-.+ .+
T Consensus 75 ~~~D~i~pg~-g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~---l~~~gIp~pp~~~~~~~~------~~ 144 (445)
T PRK08462 75 FEADAIFPGY-GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEV---MKRAGVPVIPGSDGALKS------YE 144 (445)
T ss_pred cCCCEEEECC-CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccccCC------HH
Confidence 5689999986 7789999999999999999999999999999999999998 999999999975321111 11
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHH-HHHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~-~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+..+.+++ +||+||||+.++||+||.+|++.++|.++..... .+... + .+..++||+||+
T Consensus 145 ~~~~~~~~~-g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~--------------~---~~~~vlvEe~i~ 206 (445)
T PRK08462 145 EAKKIAKEI-GYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSA--------------F---GDGTMYMEKFIN 206 (445)
T ss_pred HHHHHHHHc-CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhc--------------c---CCCcEEEeccCC
Confidence 233445678 6999999999999999999999999986432221 11111 0 135799999998
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCC
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~ 658 (741)
|. +|+++.++++. +.... .+... ..+.....|+ ....|+.. ++
T Consensus 207 g~------------------------~e~~v~v~~~~~g~~~~-~g~~~----~~~~~~~~~~-----~~~~p~~~--l~ 250 (445)
T PRK08462 207 NP------------------------RHIEVQILGDKHGNVIH-VGERD----CSLQRRHQKL-----IEESPAVV--LD 250 (445)
T ss_pred CC------------------------eEEEEEEEECCCCCEEE-EEecc----ccceecccce-----EEEcCCCC--CC
Confidence 74 48999999764 33222 11110 0011101111 11345532 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
++..+++++.+.+++++||+.|++++||++++ +|++||+||||+++.+
T Consensus 251 ~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~-~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 251 EKTRERLHETAIKAAKAIGYEGAGTFEFLLDS-NLDFYFMEMNTRLQVE 298 (445)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcceEEEEEeC-CCCEEEEEEECCcCcC
Confidence 89999999999999999999999999999985 5789999999999754
No 41
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.91 E-value=2.7e-23 Score=236.60 Aligned_cols=221 Identities=17% Similarity=0.273 Sum_probs=167.8
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|.|+|. +|...|+..++..|+.+|++++|+++.++.++.||..+|++ |+++|||+||+......+ .+
T Consensus 73 ~~~daI~pg-~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~---l~~~GVpv~p~~~~~v~~------~~ 142 (499)
T PRK08654 73 AGADAIHPG-YGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKL---MKKAGVPVLPGTEEGIED------IE 142 (499)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHH---HHHcCcCCCCCcCcCCCC------HH
Confidence 457999996 68888999999999999999999999999999999999998 999999999986532111 12
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHH-HHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE-CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~-a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+.++.+++ +||+||||+.+|+|+||.+|++.++|..+++.... +... | .++.++||+||+
T Consensus 143 e~~~~a~~i-gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~--------------f---~~~~v~vE~~I~ 204 (499)
T PRK08654 143 EAKEIAEEI-GYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSA--------------F---GDSTVFIEKYLE 204 (499)
T ss_pred HHHHHHHHh-CCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHh--------------C---CCCeEEEEeCCC
Confidence 234556788 69999999999999999999999999864433221 1111 0 046799999999
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCC
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~ 658 (741)
|. +|+++.++++. +..+.+. ..+. .+ ..+++ ......|++. ++
T Consensus 205 ~~------------------------r~ieVqvl~d~~G~vv~l~-~rec----si---qrr~q--k~ie~~Pa~~--l~ 248 (499)
T PRK08654 205 KP------------------------RHIEIQILADKHGNVIHLG-DREC----SI---QRRHQ--KLIEEAPSPI--MT 248 (499)
T ss_pred CC------------------------cEEEEEEEEcCCCCEEEEe-eecc----cc---ccCcc--ceEEECCCCC--CC
Confidence 75 59999999875 3332221 1110 01 11111 1223456553 78
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
+++.+++++.|.+++++||+.|.++|||+++ +|++||+||||+++.+
T Consensus 249 ~~~~~~l~~~A~~l~~algy~g~gtVEfl~~--~g~~yflEiNpRlqve 295 (499)
T PRK08654 249 PELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNFYFLEMNTRLQVE 295 (499)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceEEEEEEE--CCcEEEEEEECCCCCC
Confidence 9999999999999999999999999999997 5889999999999754
No 42
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.91 E-value=4.5e-23 Score=234.15 Aligned_cols=242 Identities=19% Similarity=0.247 Sum_probs=175.4
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeE--EEeCccccCCch
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 498 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~--~v~~~e~~~~~~ 498 (741)
..+|.|+|. +|...|+..++..|+..|++++|+++.++.+|.||..+|++ |+++|||+|++. .+...
T Consensus 76 ~~~daI~pg-~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~---l~~~GIp~~p~~~~~v~~~------- 144 (467)
T PRK12833 76 CGADAIHPG-YGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRT---ARRAGVPTVPGSDGVVASL------- 144 (467)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcCcCcCCH-------
Confidence 457999995 57778999999999999999999999999999999999998 999999999985 34321
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHH-HHHhcCCCCCcccccccccCCCCCCCeEEEeec
Q 004630 499 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577 (741)
Q Consensus 499 ~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~-~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEef 577 (741)
+.+.++.+++ +||+||||+.+|+|+||.+|++.++|.++++... .+... + .++.++||+|
T Consensus 145 -~e~~~~~~~i-gyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~--------------~---~~~~vlvEef 205 (467)
T PRK12833 145 -DAALEVAARI-GYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAA--------------F---GDGGVYLERF 205 (467)
T ss_pred -HHHHHHHHHh-CCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHh--------------c---CCCcEEEEec
Confidence 2234456678 6999999999999999999999999986433221 11111 0 1467999999
Q ss_pred ccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 578 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
|++. +|+++.+++++.....+.+. . ..+...+. ......|++. +
T Consensus 206 i~~~------------------------~ei~v~v~~dg~~~~~~~~~-~-------~~~~r~~~--ki~e~~p~~~--l 249 (467)
T PRK12833 206 IARA------------------------RHIEVQILGDGERVVHLFER-E-------CSLQRRRQ--KILEEAPSPS--L 249 (467)
T ss_pred CCCC------------------------EEEEEEEEeCCCcEEEEEEe-e-------cccccCCc--cEEEECCCCC--C
Confidence 9853 49999999875432222111 0 01111111 1122345432 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004630 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~ 737 (741)
++++.+++++.+.+++++||+.|.+++||+++.++|++||+||||+++.+. .+...++ ..++++.++..|+
T Consensus 250 ~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~~--~~te~~t-------Gvdl~~~~i~~a~ 320 (467)
T PRK12833 250 TPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFYFIEMNTRIQVEH--PVTEAIT-------GIDLVQEMLRIAD 320 (467)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEEEEEEECCCCcch--hhhHHHh-------CCCHHHHHHHHHC
Confidence 899999999999999999999999999999985468899999999997653 1222222 1256666666654
No 43
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.91 E-value=3.3e-23 Score=234.92 Aligned_cols=221 Identities=18% Similarity=0.244 Sum_probs=164.9
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeE--EEeCccccCCch
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD--VRRKEDLLKTPI 498 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~--~v~~~e~~~~~~ 498 (741)
..+|+|+|.. |...|++.++..++.+|+|++|++..++.+|+||..||++ |+++|||+|++. .+...
T Consensus 73 ~~id~I~p~~-~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~---l~~~gIp~pp~~~~~v~~~------- 141 (451)
T PRK08591 73 TGADAIHPGY-GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKAT---MKKAGVPVVPGSDGPVDDE------- 141 (451)
T ss_pred hCCCEEEECC-CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccccCCH-------
Confidence 4689999975 6778899999999999999999999999999999999998 999999999974 33321
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecc
Q 004630 499 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578 (741)
Q Consensus 499 ~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI 578 (741)
+.+.++..++ +||+||||+.+++|+||.+|++.+||..+ ++.+..... .. + .++.++||+||
T Consensus 142 -~~~~~~~~~~-g~PvvvKP~~g~gs~Gv~iv~~~~el~~~---~~~~~~~~~-----~~-----~---~~~~vlvEe~i 203 (451)
T PRK08591 142 -EEALAIAKEI-GYPVIIKATAGGGGRGMRVVRTEAELEKA---FSMARAEAK-----AA-----F---GNPGVYMEKYL 203 (451)
T ss_pred -HHHHHHHHHc-CCCEEEEECCCCCCceEEEECCHHHHHHH---HHHHHHHHH-----Hh-----c---CCCCEEEEeCC
Confidence 2234455678 69999999999999999999999999853 443322100 00 0 03679999999
Q ss_pred cCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 579 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
+|. +|+++.+++++ +....+ +.. ...+.....+ .....|++ .+
T Consensus 204 ~g~------------------------~e~~v~v~~d~~g~~~~~-~~~----~~~~~~~~~~-----~~~~~p~~--~l 247 (451)
T PRK08591 204 ENP------------------------RHIEIQVLADGHGNAIHL-GER----DCSLQRRHQK-----VLEEAPSP--AI 247 (451)
T ss_pred CCC------------------------cEEEEEEEEcCCCCEEEE-ecc----cccceeccee-----EEEECCCC--CC
Confidence 974 48999888865 332221 100 0001110011 11233443 26
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
++++.+++++.+.+++++||+.|++++||+++. +|++||+|||++++.+
T Consensus 248 ~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g~~~viEINpR~~~~ 296 (451)
T PRK08591 248 TEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGEFYFIEMNTRIQVE 296 (451)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CCCEEEEEEECCCCcc
Confidence 899999999999999999999999999999985 6899999999999755
No 44
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.91 E-value=5.1e-23 Score=233.97 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=166.7
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|+|+|. +|...|+..++..+|.+|+|++|++..++.+|+||..+|++ |+++|||+|++....-.+ .+
T Consensus 72 ~~~D~I~pg-~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~---l~~~GIp~pp~~~~~~~~------~~ 141 (472)
T PRK07178 72 TGCDALHPG-YGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRA---MIKAGVPVTPGSEGNLAD------LD 141 (472)
T ss_pred HCCCEEEeC-CCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHH---HHHCCCCCCCCcCcCCCC------HH
Confidence 468999996 58889999999999999999999999999999999999998 999999999986421111 12
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHH-HHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL-EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al-~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+.++.+++ +|||||||+.+|||+||.+|++.+||..+.+.+ ..+.... .+..++||+||+
T Consensus 142 e~~~~~~~i-gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~-----------------~~~~v~iE~~i~ 203 (472)
T PRK07178 142 EALAEAERI-GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAF-----------------GSAEVFLEKCIV 203 (472)
T ss_pred HHHHHHHHc-CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhc-----------------CCCCEEEEEcCC
Confidence 233455788 699999999999999999999999998643322 2222110 145799999997
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCC
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~ 658 (741)
+. +|+++.++++. +....+.+. . .....++ .......|++ .++
T Consensus 204 ~~------------------------~eiev~v~~d~~G~~v~~~er-----~---~s~~~~~--~~~~e~~P~~--~l~ 247 (472)
T PRK07178 204 NP------------------------KHIEVQILADSHGNVVHLFER-----D---CSIQRRN--QKLIEIAPSP--QLT 247 (472)
T ss_pred CC------------------------eEEEEEEEEECCCCEEEEEcc-----c---cceEecC--cceEEECCCC--CCC
Confidence 75 59999999864 332221110 0 0111001 1122345653 278
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
+++.+++++.|.+++++||+.|.++|||+++. +|++||+||||+++.+
T Consensus 248 ~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 248 PEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DGEVYFMEMNTRVQVE 295 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CCCEEEEEEeCCcCCC
Confidence 99999999999999999999999999999985 6889999999998654
No 45
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.91 E-value=1e-22 Score=231.79 Aligned_cols=222 Identities=16% Similarity=0.221 Sum_probs=167.7
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEe-CccccCCchh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRR-KEDLLKTPIV 499 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~-~~e~~~~~~~ 499 (741)
..+|.|+|. .|...|+..++..|+.+|++++|++..++.+++||..+|++ |+++|||+|++.... ..+ .
T Consensus 72 ~~iDaI~pg-~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~---l~~~gIpvpp~~~~~~~~~------~ 141 (478)
T PRK08463 72 CGADAIHPG-YGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYL---MKKNGIPIVPGTEKLNSES------M 141 (478)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHH---HHHcCCCCCCCccccCCCC------H
Confidence 457999995 57788999999999999999999999999999999999998 999999998865432 111 1
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHH-HHHhcCCCCCcccccccccCCCCCCCeEEEeecc
Q 004630 500 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALE-ECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578 (741)
Q Consensus 500 ~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~-~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI 578 (741)
+.+.++.+++ +||+||||+.+|||+||.+|++.++|..+++... .+..+. .+..++||+||
T Consensus 142 ~~~~~~~~~i-gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~-----------------~~~~vlvEefI 203 (478)
T PRK08463 142 EEIKIFARKI-GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYF-----------------NNDEVFMEKYV 203 (478)
T ss_pred HHHHHHHHHh-CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhc-----------------CCCcEEEEecC
Confidence 2234456678 6999999999999999999999999986443221 222210 14689999999
Q ss_pred cCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 579 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
+|. +|+++.++++. +....+.. ....... ++ .......|++. +
T Consensus 204 ~~~------------------------~~iev~v~~d~~g~v~~~~e-----r~~s~~~---~~--~~~ie~~P~~~--l 247 (478)
T PRK08463 204 VNP------------------------RHIEFQILGDNYGNIIHLCE-----RDCSIQR---RH--QKVIEIAPCPS--I 247 (478)
T ss_pred CCC------------------------eEEEEEEEEcCCCCEEEEec-----cCCcccc---cc--CceEEECCCCC--C
Confidence 874 58999888875 33222111 0000111 11 11234566643 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
++++.+++++.+.+++++||+.|++++||+++. +|++||+||||+++.+
T Consensus 248 ~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~~~y~iEiN~R~~~~ 296 (478)
T PRK08463 248 SDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YNRFYFMEMNTRIQVE 296 (478)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCC
Confidence 999999999999999999999999999999985 6899999999998765
No 46
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.90 E-value=1.9e-22 Score=228.66 Aligned_cols=222 Identities=15% Similarity=0.206 Sum_probs=162.2
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
+.+|+|+|. +|...|++.++..++.+|+|+.|++..++.+|+||..||++ |+++|||+|++......+ .+
T Consensus 73 ~~id~I~p~-~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~------~~ 142 (450)
T PRK06111 73 TGAEAIHPG-YGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRA---MQAAGVPVVPGITTNLED------AE 142 (450)
T ss_pred hCCCEEEeC-CCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcCcCcCC------HH
Confidence 467999986 57778899999999999999999999999999999999998 999999999973221111 11
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHH-HHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE-CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~-a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+.++..++ +||+||||+.+++|+||.+|++.++|..+.+.+.. +.... .+..++||+||+
T Consensus 143 e~~~~~~~~-~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~-----------------~~~~~lvEe~i~ 204 (450)
T PRK06111 143 EAIAIARQI-GYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFF-----------------GNGEMYIEKYIE 204 (450)
T ss_pred HHHHHHHHh-CCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhc-----------------CCCcEEEEcccC
Confidence 223445678 69999999999999999999999999854332211 11110 145799999999
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCC
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~ 658 (741)
|. +|+++.++.+. +....+.+.. . .+.... ++ .....|++. ++
T Consensus 205 g~------------------------~e~~v~v~~~~~g~~~~~~~~~-~----~~~~~~-~~----~~~~~p~~~--~~ 248 (450)
T PRK06111 205 DP------------------------RHIEIQLLADTHGNTVYLWERE-C----SVQRRH-QK----VIEEAPSPF--LD 248 (450)
T ss_pred CC------------------------cEEEEEEEEcCCCCEEEEEeec-c----cccccc-cc----eEEecCCCC--CC
Confidence 85 48888888754 3322221110 0 011100 00 111234432 67
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
+++.+++++++.+++++||+.|++++||++++ +|++||+|||++++.+
T Consensus 249 ~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~~~viEiN~R~~~~ 296 (450)
T PRK06111 249 EETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKNFYFLEMNTRLQVE 296 (450)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCCEEEEEEECCcCCc
Confidence 88999999999999999999999999999985 5779999999999754
No 47
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.90 E-value=1.6e-22 Score=227.23 Aligned_cols=224 Identities=16% Similarity=0.178 Sum_probs=160.3
Q ss_pred cCccEEEEccCCCCCCch---HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCc
Q 004630 421 ENQATVFIAVHGGIGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 497 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg---~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~ 497 (741)
..+|+|++. .|+. .+...|+.+|+|++|++..++.+|+||..||++ |+++|||+|+|..+...+
T Consensus 61 ~~id~vi~~-----~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~----- 127 (420)
T PRK00885 61 EGIDLTVVG-----PEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDF---MARYGIPTAAYETFTDAE----- 127 (420)
T ss_pred hCCCEEEEC-----CchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHH---HHHcCCCCCCeEEeCCHH-----
Confidence 357998863 2343 456678889999999999999999999999998 999999999998886532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeec
Q 004630 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577 (741)
Q Consensus 498 ~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEef 577 (741)
.+.++.+++ +||+||||..+++|+||.+|++.+++.+ +++.++... .++ .....+|||||
T Consensus 128 ---~~~~~~~~~-~~P~VvKP~~~~gs~Gv~~v~~~~el~~---~~~~~~~~~---~~~----------~~~~~vlvEe~ 187 (420)
T PRK00885 128 ---EALAYLDEK-GAPIVVKADGLAAGKGVVVAMTLEEAKA---AVDDMLAGN---KFG----------DAGARVVIEEF 187 (420)
T ss_pred ---HHHHHHHHc-CCCEEEEeCCCCCCCcEEEeCCHHHHHH---HHHHHhhcc---ccc----------CCCCeEEEEEc
Confidence 223445678 6999999999999999999999999875 445444210 000 01368999999
Q ss_pred ccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 578 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
|+|+ |+++.++.+++... ..+..+. ....++.+.+...+.+..+.|++. +
T Consensus 188 i~G~-------------------------E~sv~~~~~g~~~~-~~~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--l 237 (420)
T PRK00885 188 LDGE-------------------------EASFFAFVDGENVL-PLPTAQD--HKRAGDGDTGPNTGGMGAYSPAPV--V 237 (420)
T ss_pred cCCc-------------------------EEEEEEEECCCceE-eceeeEe--eeecccCCCCCCCCCCceeccCCC--C
Confidence 9997 99999888654433 3332221 122344443444444455677753 5
Q ss_pred CHHHHHHHHH-HHHHHHH---HcCC--cceeEEEEEEEcCCCcEEEEecCCCCCCCCC
Q 004630 658 STEALDKCKQ-RIELIAN---ALQL--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 658 ~~e~~~~i~~-~a~~~~~---aLg~--~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~ 709 (741)
+++..+++++ ++.++.+ ++|+ +|++++|||++. +| +||+|+|+++|.+.+
T Consensus 238 ~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~-~g-~~viEin~R~g~~~~ 293 (420)
T PRK00885 238 TEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITK-DG-PKVIEFNARFGDPET 293 (420)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEEC-CC-cEEEEEecccCCccH
Confidence 7777777665 6555555 4444 699999999994 44 899999999997644
No 48
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.90 E-value=3.6e-22 Score=219.25 Aligned_cols=193 Identities=22% Similarity=0.213 Sum_probs=147.6
Q ss_pred HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 004630 439 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518 (741)
Q Consensus 439 ~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP 518 (741)
..-..|+..|+| ++++..+..+|+||..+|++ |+++|||+|+|..+...+ .+.++.+++ +||+||||
T Consensus 74 ~~l~~l~~~g~~-~~p~~~~~~~~~dK~~~k~~---l~~~gip~p~~~~~~~~~--------~~~~~~~~~-g~P~vvKp 140 (352)
T TIGR01161 74 EALEKLEARGVK-LFPSPDALAIIQDRLTQKQF---LQKLGLPVPPFLVIKDEE--------ELDAALQEL-GFPVVLKA 140 (352)
T ss_pred HHHHHHHhCCCe-ECCCHHHHHHhcCHHHHHHH---HHHcCCCCCCccEeCCHH--------HHHHHHHHc-CCCEEEEe
Confidence 344667888887 56999999999999999998 999999999999887532 234455678 69999999
Q ss_pred CCCC-CCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhh
Q 004630 519 ARDG-CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597 (741)
Q Consensus 519 ~~~g-sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 597 (741)
..+| +|+||.+|++.+|+.. +++... +..+||||||++.
T Consensus 141 ~~~g~~g~Gv~~v~~~~el~~---a~~~~~---------------------~~~~lvEe~I~~~---------------- 180 (352)
T TIGR01161 141 RTGGYDGRGQYRIRNEADLPQ---AAKELG---------------------DRECIVEEFVPFE---------------- 180 (352)
T ss_pred CCCCCCCCCEEEECCHHHHHH---HHHhcC---------------------CCcEEEEecCCCC----------------
Confidence 9987 7999999999998874 333321 3579999999953
Q ss_pred hhcCCCceeEEEEEEEcC-CCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004630 598 MWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 598 ~~~g~~~~~Eisv~vl~~-~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
+|+++.++.+ +|....+ |..+.....+.+ ...+.|+. +++++.+++++++.+++++|
T Consensus 181 --------~E~sv~~~~~~~G~~~~~-~~~~~~~~~g~~----------~~~~~p~~---~~~~~~~~~~~~a~~i~~~l 238 (352)
T TIGR01161 181 --------RELSVIVARSADGETAFY-PVVENIHQDGIL----------RYVVAPAA---VPDAIQARAEEIARRLMEEL 238 (352)
T ss_pred --------eEEEEEEEEcCCCCEEEE-CCcccEEeCCEE----------EEEECCCC---CCHHHHHHHHHHHHHHHHHc
Confidence 3999988754 3443333 222211111111 12356775 68889999999999999999
Q ss_pred CCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 677 g~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
|+.|++++|||++. +|++|||||||+||-+
T Consensus 239 ~~~G~~~ve~~~~~-dg~~~v~EinpR~~~s 268 (352)
T TIGR01161 239 GYVGVLAVEMFVLP-DGRLLINELAPRVHNS 268 (352)
T ss_pred CceeEEEEEEEEeC-CCcEEEEEecCCCCCc
Confidence 99999999999995 6889999999999843
No 49
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.89 E-value=9.4e-22 Score=218.14 Aligned_cols=216 Identities=24% Similarity=0.249 Sum_probs=156.5
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
+.+|+|++....- . -.++ ..|+.+|+|+ .++..+..+|+||..+++++ ++++|||+|+|..+...+
T Consensus 61 ~~id~v~~~~e~v-~-~~~~-~~l~~~g~~~-~~~~~~~~~~~dK~~~~~~~--~~~~gip~p~~~~~~~~~-------- 126 (380)
T TIGR01142 61 EKPDYIVPEIEAI-A-TDAL-FELEKEGYFV-VPNARATKLTMNREGIRRLA--AEELGLPTSRYMFADSLD-------- 126 (380)
T ss_pred hCCCEEEeccCcc-C-HHHH-HHHHhcCCee-CCCHHHHHHhhCHHHHHHHH--HHHCCCCCCCceEeCCHH--------
Confidence 3689998865321 1 1234 4678899874 57899999999999999971 379999999999886532
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
.+.++.+++ +||+||||.++++|+||.+|++.++|.. +++.+.... + ..++.+|||+||+|
T Consensus 127 ~~~~~~~~~-g~P~VvKP~~g~~s~gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~ivEe~i~~ 187 (380)
T TIGR01142 127 ELREAVEKI-GYPCVVKPVMSSSGKGQSVVRGPEDIEK---AWEYAQEGA------R---------GGAGRVIVEEFIDF 187 (380)
T ss_pred HHHHHHHHc-CCCEEEEECCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------CCCCCEEEEEecCC
Confidence 234445678 6999999999999999999999999985 444433210 0 01467999999997
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCH
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~ 659 (741)
. +|+++.++... +.....++.. .+..+.+|. ....|++ +++
T Consensus 188 ~------------------------~E~sv~~~~~~~g~~~~~~~~~-------~~~~~~~~~----~~~~p~~---l~~ 229 (380)
T TIGR01142 188 D------------------------YEITLLTVRHVDGNTTFCAPIG-------HRQIDGDYH----ESWQPQE---MSE 229 (380)
T ss_pred C------------------------EEEEEEEEEcCCCCEEEecCcc-------eEEeCCeeE----EEECCCC---CCH
Confidence 4 49998877533 3322222211 111122221 2356766 689
Q ss_pred HHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCC
Q 004630 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 660 e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~ 709 (741)
++.+++++++++++++||+.|++++|||++. +++||+|||++||.+.+
T Consensus 230 ~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~--~~~~viEinpR~~~~~~ 277 (380)
T TIGR01142 230 KALEEAQRIAKRITDALGGYGLFGVELFVKG--DEVIFSEVSPRPHDTGM 277 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEEC--CcEEEEEeecCCCCCce
Confidence 9999999999999999999999999999983 57999999999997644
No 50
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.89 E-value=8.4e-22 Score=217.71 Aligned_cols=182 Identities=24% Similarity=0.243 Sum_probs=142.1
Q ss_pred ccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC-CCcceEE
Q 004630 451 YTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG-CSTGVAR 529 (741)
Q Consensus 451 yvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~g-sS~GV~~ 529 (741)
.++++..+..+|+||..+|++ |+++|||+|+|..+.+.+ .+.++.+++ +||+|+||+++| +|+|+.+
T Consensus 87 ~~~p~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~v~s~~--------~l~~~~~~~-g~P~vlKp~~~g~~g~Gv~~ 154 (372)
T PRK06019 87 PVPPGPDALAIAQDRLTEKQF---LDKLGIPVAPFAVVDSAE--------DLEAALADL-GLPAVLKTRRGGYDGKGQWV 154 (372)
T ss_pred eeCcCHHHHHHhcCHHHHHHH---HHHCCCCCCCceEeCCHH--------HHHHHHHHc-CCcEEEEeCCCCcCCCCeEE
Confidence 467999999999999999998 999999999999886532 234455678 699999999976 7999999
Q ss_pred eCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEE
Q 004630 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 609 (741)
Q Consensus 530 v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eis 609 (741)
+++.+|+.. +++... ...+|||+||++. +|++
T Consensus 155 v~~~~el~~---a~~~~~---------------------~~~~ivEe~I~~~------------------------~E~s 186 (372)
T PRK06019 155 IRSAEDLEA---AWALLG---------------------SVPCILEEFVPFE------------------------REVS 186 (372)
T ss_pred ECCHHHHHH---HHHhcC---------------------CCCEEEEecCCCC------------------------eEEE
Confidence 999999874 333321 3679999999963 4999
Q ss_pred EEEEcC-CCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEE
Q 004630 610 VGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFV 688 (741)
Q Consensus 610 v~vl~~-~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v 688 (741)
+.++.+ +|....+++ .+.....++++ ..+.|+. +++++.+++++++.+++++||+.|+++||||+
T Consensus 187 v~~~~~~~G~~~~~p~-~e~~~~~gi~~----------~~~~pa~---~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~ 252 (372)
T PRK06019 187 VIVARGRDGEVVFYPL-VENVHRNGILR----------TSIAPAR---ISAELQAQAEEIASRIAEELDYVGVLAVEFFV 252 (372)
T ss_pred EEEEECCCCCEEEeCC-cccEEeCCEEE----------EEECCCC---CCHHHHHHHHHHHHHHHHHcCccceeEEEEEE
Confidence 987765 444444333 22211222222 2256775 68999999999999999999999999999999
Q ss_pred EcCCCcEEEEecCCCCCCC
Q 004630 689 NVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 689 ~~~~g~~~viEINt~Pg~t 707 (741)
+. +|++|||||||+|+-+
T Consensus 253 ~~-dg~~~v~EinpR~~~s 270 (372)
T PRK06019 253 TG-DGELLVNEIAPRPHNS 270 (372)
T ss_pred cC-CCeEEEEEecCCccCc
Confidence 85 6889999999999854
No 51
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.89 E-value=1e-21 Score=221.03 Aligned_cols=226 Identities=17% Similarity=0.167 Sum_probs=158.8
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|++|+..+... -..+...|+.+|+|++|++..++.+|+||..||++ |+++|||+|+|..+...+
T Consensus 63 ~~id~vi~~~e~~l--~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~---l~~~gIp~p~~~~~~~~~-------- 129 (423)
T TIGR00877 63 KKIDLAVIGPEAPL--VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDF---MKRYGIPTAEYEVFTDPE-------- 129 (423)
T ss_pred hCCCEEEECCchHH--HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHH---HHHCCCCCCCeEEECCHH--------
Confidence 45788987532211 13567889999999999999999999999999998 999999999999886532
Q ss_pred HHHHHHhhcCCCc-EEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 501 IWHELTSKLQCKT-LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 501 ~~~~~~~~lg~~P-vvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+.++.+++ +|| +||||..+++|+||.++++.+++.. +++.++... ++ .....+|||+||+
T Consensus 130 ~~~~~~~~~-g~P~~VvKp~~~~gg~Gv~~v~~~~el~~---~~~~~~~~~----~g----------~~~~~~lvEe~i~ 191 (423)
T TIGR00877 130 EALSYIQEK-GAPAIVVKADGLAAGKGVIVAKTNEEAIK---AVEEILEQK----FG----------DAGERVVIEEFLD 191 (423)
T ss_pred HHHHHHHhc-CCCeEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHHHh----cC----------CCCCeEEEEECcc
Confidence 233455678 699 9999999999999999999998874 444443320 00 0135799999999
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCH
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~ 659 (741)
|. |+++.++.+++....+ +..+. ...+++++.+...+....+.|++. +++
T Consensus 192 G~-------------------------E~sv~~~~dg~~~~~~-~~~~~--~~~~~~~~~~~~~g~~~~~~p~~~--~~~ 241 (423)
T TIGR00877 192 GE-------------------------EVSLLAFVDGKTVIPM-PPAQD--HKRALEGDKGPNTGGMGAYSPAPV--FTE 241 (423)
T ss_pred Cc-------------------------eEEEEEEEcCCeEEec-eeeee--eeecccCCCCCCCCCCceecCCCC--CCH
Confidence 97 9999988765443332 22221 122444444444344445667642 566
Q ss_pred HHHHHH-HHHH---HHHHHHcC--CcceeEEEEEEEcCCCcEEEEecCCCCCCCCC
Q 004630 660 EALDKC-KQRI---ELIANALQ--LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 660 e~~~~i-~~~a---~~~~~aLg--~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~ 709 (741)
+..+++ ++++ .+++.++| +.|++++|||+++ +| +||+|||+++|-+.+
T Consensus 242 ~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g-~~viEin~R~g~~~~ 295 (423)
T TIGR00877 242 EVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG-PKVLEFNCRFGDPET 295 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC-cEEEEEEccCCCccc
Confidence 655443 3344 44445554 5799999999994 45 999999999986544
No 52
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.88 E-value=1.3e-21 Score=206.96 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=153.0
Q ss_pred CccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhH
Q 004630 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~ 501 (741)
.+|+||+.. ..+.....+...|+..|+|++++ ..++.+|+||..++++ |+++|||+|++..+...+ .
T Consensus 48 ~~d~v~~r~-~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~dK~~~~~~---l~~~gi~~P~t~~~~~~~--------~ 114 (277)
T TIGR00768 48 ELDVVIVRI-VSMFRGLAVARYLESLGVPVINS-SDAILNAGDKFLTSQL---LAKAGLPQPRTGLAGSPE--------E 114 (277)
T ss_pred CCCEEEEec-hhHhhHHHHHHHHHHCCCeeeCC-HHHHHHHhhHHHHHHH---HHHCCCCCCCEEEeCCHH--------H
Confidence 369999988 22223458889999999999876 7899999999999998 999999999998876432 2
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 502 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 502 ~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
+.++.+++ +||+||||..+++|.||.++++.+++..+.+.+..... ....++||+||+|.
T Consensus 115 ~~~~~~~~-~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~-------------------~~~~~lvQe~I~~~ 174 (277)
T TIGR00768 115 ALKLIEEI-GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNG-------------------PQNLFYVQEYIKKP 174 (277)
T ss_pred HHHHHHhc-CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcc-------------------cCCcEEEEeeecCC
Confidence 34455678 69999999999999999999999988754333221100 02479999999975
Q ss_pred chhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHH
Q 004630 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661 (741)
Q Consensus 582 ~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~ 661 (741)
+ | +++++.++++. .. ..+......+| ...+..+.. ..|.+ ++
T Consensus 175 ~------------------~----~~~rv~v~~~~--~~---~~~~r~~~~~~---~~n~~~g~~--~~~~~---l~--- 216 (277)
T TIGR00768 175 G------------------G----RDIRVFVVGDE--VI---AAIYRITSGHW---RTNLARGGK--AEPCP---LT--- 216 (277)
T ss_pred C------------------C----ceEEEEEECCE--EE---EEEEEcCCCch---hhhhhcCCe--eeecC---CC---
Confidence 1 1 27777776542 11 11111112222 222222221 23433 33
Q ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCc
Q 004630 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710 (741)
Q Consensus 662 ~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S 710 (741)
++++++|.+++++||+ ++++|||+++. +|++||+|||++||++..+
T Consensus 217 -~~~~~~a~~~~~~l~~-~~~~vD~~~~~-~g~~~viEiN~~p~~~~~~ 262 (277)
T TIGR00768 217 -EEIEELAIKAAKALGL-DVVGIDLLESE-DRGLLVNEVNPNPEFKNSV 262 (277)
T ss_pred -HHHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCeEEEEEcCCcchhhhH
Confidence 4678899999999998 79999999985 6899999999999987653
No 53
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.88 E-value=4.8e-21 Score=233.82 Aligned_cols=223 Identities=17% Similarity=0.257 Sum_probs=167.4
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|+|+|. +|...|+..++..|+..|++++|+++.++.+|.||..++++ ++++|||+|++......+ .+
T Consensus 73 ~~iDaI~PG-yGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~l---a~~~GVPvpp~t~~~v~~------~e 142 (1143)
T TIGR01235 73 NGVDAIHPG-YGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNL---AIKAGVPVVPGTDGPPET------ME 142 (1143)
T ss_pred hCCCEEEEC-CCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHH---HHHcCCCCCCCcccCcCC------HH
Confidence 468999996 68888999999999999999999999999999999999998 999999999975321111 12
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
.+.++.+++ +||+||||+.+|||+||.+|++.+||.++ ++.+.... ..+.+ ++.++||+||+|
T Consensus 143 ea~~~ae~i-GyPvIVKP~~GGGGrG~riV~~~eEL~~a---~~~a~~ea-----~~~fg--------~~~vlIEefI~g 205 (1143)
T TIGR01235 143 EVLDFAAAI-GYPVIIKASWGGGGRGMRVVRSEADVADA---FQRAKSEA-----KAAFG--------NDEVYVEKLIER 205 (1143)
T ss_pred HHHHHHHHc-CCCEEEEECCCCCCCccEEeCCHHHHHHH---HHHHHHHH-----HHhcC--------CCcEEEEEcCCC
Confidence 234456788 69999999999999999999999999853 33332110 00001 467999999987
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCH
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~ 659 (741)
. +|+++.++++. |..+.+.. . . ......+ .....+.|++. +++
T Consensus 206 ~------------------------reIeVqVlgD~~G~vv~l~e---R--d---csvqrr~--qk~ie~aPa~~--L~~ 249 (1143)
T TIGR01235 206 P------------------------RHIEVQLLGDKHGNVVHLFE---R--D---CSVQRRH--QKVVEVAPAPY--LSR 249 (1143)
T ss_pred C------------------------eEEEEEEEEeCCCCEEEEEe---c--c---ccccccC--ceEEEEeCCCC--CCH
Confidence 5 59999999875 33222111 0 0 0011001 11223456543 789
Q ss_pred HHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 660 e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
++.++|++.|.+++++||+.|+++|||+++. +|++||+||||+++.+
T Consensus 250 e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 250 EVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DGKFYFIEVNPRIQVE 296 (1143)
T ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CCcEEEEEeecCCCcc
Confidence 9999999999999999999999999999985 5899999999999754
No 54
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.88 E-value=4.3e-21 Score=203.84 Aligned_cols=213 Identities=23% Similarity=0.262 Sum_probs=149.7
Q ss_pred CccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhH
Q 004630 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~ 501 (741)
.+|+||+-.. ..+....++.+||.+|+|++++ ..++.+|+||..++++ |+++|||+|++..+...+ .
T Consensus 47 ~~d~v~~r~~-~~~~~~~~~~~le~~g~~~~n~-~~~~~~~~dK~~~~~~---l~~~gip~P~t~~~~~~~--------~ 113 (280)
T TIGR02144 47 DVDVAIIRCV-SQSRALYSARLLEALGVPVINS-SHVIEACGDKIFTYLK---LAKAGVPTPRTYLAFDRE--------A 113 (280)
T ss_pred CCCEEEEcCc-chhhHHHHHHHHHHCCCcEECc-HHHHHHHhhHHHHHHH---HHHCCcCCCCeEeeCCHH--------H
Confidence 4699998631 2234567899999999999875 6899999999999998 999999999998875322 2
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 502 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 502 ~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
+.++...+ +||+||||..+++|.||.++++.+++..+.+... .... ..+..+++|+||+|.
T Consensus 114 ~~~~~~~~-~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~-~~~~-----------------~~~~~~ivQefI~~~ 174 (280)
T TIGR02144 114 ALKLAEAL-GYPVVLKPVIGSWGRLVALIRDKDELESLLEHKE-VLGG-----------------SQHKLFYIQEYINKP 174 (280)
T ss_pred HHHHHHHc-CCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHH-hhcC-----------------CcCCeEEEEcccCCC
Confidence 23345678 6999999999999999999999988875332211 1100 013579999999863
Q ss_pred chhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHH
Q 004630 582 EILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEA 661 (741)
Q Consensus 582 ~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~ 661 (741)
| +|+++.++++. .. ..+. .... +|......+ ....|.+ +++
T Consensus 175 -------------------~----~d~~v~vig~~--~~---~~~~-r~~~---~~~~~~~~g--~~~~~~~---~~~-- 215 (280)
T TIGR02144 175 -------------------G----RDIRVFVIGDE--AI---AAIY-RYSN---HWRTNTARG--GKAEPCP---LDE-- 215 (280)
T ss_pred -------------------C----CceEEEEECCE--EE---EEEE-EcCC---chhhhhhcC--CceeccC---CCH--
Confidence 1 38888888643 11 1111 1111 121111111 1234443 343
Q ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCC
Q 004630 662 LDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 662 ~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~ 709 (741)
+++++|++++++||+ ++++|||+++. +|++||+|||++||++..
T Consensus 216 --~~~~~a~~~~~~lg~-~~~~vD~~~~~-~g~~~v~EvN~~p~~~~~ 259 (280)
T TIGR02144 216 --EVEELAVKAAEAVGG-GVVAIDIFESK-ERGLLVNEVNHVPEFKNS 259 (280)
T ss_pred --HHHHHHHHHHHHhCC-CeEEEEEEEcC-CCCEEEEEEeCCcchhhh
Confidence 578899999999996 69999999985 678999999999999864
No 55
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.88 E-value=7.8e-21 Score=203.13 Aligned_cols=243 Identities=19% Similarity=0.236 Sum_probs=181.7
Q ss_pred ccCccEEEEccCCCCCCchHH----HHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccC
Q 004630 420 KENQATVFIAVHGGIGEDGTL----QSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK 495 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~i----q~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~ 495 (741)
++.+|.++|.+.|+.+.+-.+ .+.|+.+|++.+|++..+..+|.||..+|++ |++.|+|+| .......
T Consensus 68 ~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~---m~eigi~~P-~~~~~~~---- 139 (400)
T COG0458 68 KERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEA---MREIGIPVP-SRIAHSV---- 139 (400)
T ss_pred hcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHH---HHHcCCCCC-ccccccH----
Confidence 567899999999988876544 4678899999999999999999999999999 999999999 3322221
Q ss_pred CchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEe
Q 004630 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575 (741)
Q Consensus 496 ~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVE 575 (741)
+...+....+ +|||||||+.+-||.|..+++|.+||.+ .++..+.. .+-.++|+|
T Consensus 140 ----~e~~~~~~~i-g~PvIVrP~~~lGG~G~~i~~n~eel~~---~~~~~l~~-----------------s~~~~vl~e 194 (400)
T COG0458 140 ----EEADEIADEI-GYPVIVKPSFGLGGSGGGIAYNEEELEE---IIEEGLRA-----------------SPVEEVLIE 194 (400)
T ss_pred ----HHHhhhHhhc-CCCEEEecCcCCCCCceeEEeCHHHHHH---HHHhcccc-----------------Cccccceee
Confidence 1224456778 6999999999999999999999999985 33333332 124689999
Q ss_pred ecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCC
Q 004630 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPAS 655 (741)
Q Consensus 576 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~ 655 (741)
++|.|. +|++..++.+....+.+...++..... ..+.+.+....|++.
T Consensus 195 esi~G~------------------------ke~e~ev~rd~~~n~ivvc~men~dp~-------gvhtgdsi~vapaqt- 242 (400)
T COG0458 195 ESIIGW------------------------KEFEYEVVRDGKDNCIVVCNMENLDPM-------GVHTGDSITVAPAQT- 242 (400)
T ss_pred eeecCc------------------------eEEEEEEEEeCCCCEEEEEeCCccccc-------cccccceeeeccccc-
Confidence 999884 799998888764443222222211111 223455555667664
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHH
Q 004630 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDL 735 (741)
Q Consensus 656 ~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~ 735 (741)
+++...+.++..+.++.+.||..|-++|||.+++++|++|++|+||+++ .+|.|...|. -||..-+...+..
T Consensus 243 -l~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvS--rssaLaskAt-----gypia~vaakla~ 314 (400)
T COG0458 243 -LTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVS--RSSALASKAT-----GYPIAKVAAKLAV 314 (400)
T ss_pred -cccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcC--cchhhhhhcc-----CChHHHHHHHhhc
Confidence 7888899999999999999999999999999997667999999996554 6664444443 3887666555543
No 56
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.87 E-value=8.8e-21 Score=233.88 Aligned_cols=223 Identities=16% Similarity=0.181 Sum_probs=167.8
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeE-EEeCccccCCchh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRKEDLLKTPIV 499 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~-~v~~~e~~~~~~~ 499 (741)
..+|.|+|.. |...|+..++..|+.+|++++|++..++.+|.||..+|++ |+++|||+|++. .+.+.+
T Consensus 72 ~~idaIiPG~-gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~l---l~~~GVPt~p~~~lv~s~d------- 140 (1201)
T TIGR02712 72 TGAQAIHPGY-GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTAREL---AEAAGVPLLPGTGLLSSLD------- 140 (1201)
T ss_pred HCCCEEEeCC-cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHH---HHHCCCCCCCceeecCCHH-------
Confidence 4578888865 6778999999999999999999999999999999999998 999999998754 333321
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 500 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 500 ~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+.+..+++ +|||||||..+++|+||.+|++.++|.++++.+...... .+ .+..++||+||+
T Consensus 141 -ea~~~a~~i-gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~----~f------------~~~~vlVEefI~ 202 (1201)
T TIGR02712 141 -EALEAAKEI-GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGES----FF------------GDAGVFLERFVE 202 (1201)
T ss_pred -HHHHHHHhc-CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHH----hc------------CCCcEEEEecCC
Confidence 223445678 699999999999999999999999998654444332111 00 035699999998
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCH
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMST 659 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~ 659 (741)
|. +|+++.++++....+...+..... +.... ......+|++. +++
T Consensus 203 g~------------------------~eveV~v~~Dg~g~vv~lg~rd~s----~qr~~-----~k~vee~Pap~--l~~ 247 (1201)
T TIGR02712 203 NA------------------------RHVEVQIFGDGKGKVVALGERDCS----LQRRN-----QKVVEETPAPN--LPP 247 (1201)
T ss_pred CC------------------------EEEEEEEEECCCCeEEEeeEEEee----eEecC-----ccEEEEcCCCC--CCH
Confidence 64 499999998754333222322110 11111 11223456643 789
Q ss_pred HHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 660 e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
++.+++++.+.+++++|+++|++++||+++.++|++||+||||+++.+
T Consensus 248 ~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 248 ETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTRLQVE 295 (1201)
T ss_pred HHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECCcCcc
Confidence 999999999999999999999999999998645889999999999755
No 57
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.86 E-value=2e-20 Score=211.65 Aligned_cols=249 Identities=14% Similarity=0.095 Sum_probs=165.8
Q ss_pred cCccEEEEccCCCCCCchH---HHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCcc-CeEEEeCccccCC
Q 004630 421 ENQATVFIAVHGGIGEDGT---LQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTI-NKDVRRKEDLLKT 496 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~---iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p-~~~~v~~~e~~~~ 496 (741)
..+|.|++ .+|++. +...|+.+|+|+.|++..++.+|+||..||++ |+++|||+| .|..+.+.+
T Consensus 68 ~~id~Vi~-----g~E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~---l~~~gIpt~~~~~~~~~~~---- 135 (486)
T PRK05784 68 VNPDLVVI-----GPEEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWAREL---MWKYSIPGRLRYKVFYDVE---- 135 (486)
T ss_pred hCCCEEEE-----CCchHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHH---HHHcCcCCCccceEeCCHH----
Confidence 46898887 257774 45668899999999999999999999999998 999999997 576665422
Q ss_pred chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc-----hHHHH-HHHHHHHhcCCCCCcccccccccCCCCCCC
Q 004630 497 PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED-----LTVYV-KALEECLLRIPPNSFSRAHGMIEMPNPPPE 570 (741)
Q Consensus 497 ~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~e-----L~~~~-~al~~a~~~~~~~~l~~~~~~~~~p~~~~~ 570 (741)
+ +.++.+.+ +|+||||..+++|+||.+|++.++ +.+.. +++++++... ..++ ..+.
T Consensus 136 ---e-a~~~~~~~--~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~--~~~g----------~~~~ 197 (486)
T PRK05784 136 ---E-AAKFIEYG--GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGS--AYYK----------DVEP 197 (486)
T ss_pred ---H-HHHHHhhc--CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhH--hhcc----------CCCC
Confidence 2 22233344 699999999999999999999874 32222 3444443110 0000 1146
Q ss_pred eEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEc
Q 004630 571 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLT 650 (741)
Q Consensus 571 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~ 650 (741)
.+||||||+|. |+++.++.+++....+++... ...+++++...+.|....+.
T Consensus 198 ~VlIEEfL~G~-------------------------E~SV~al~dG~~~~~l~~~qd---~k~~~~~d~gpntGgmg~~~ 249 (486)
T PRK05784 198 KILVEEKVDGV-------------------------EYTLQVLTDGETVIPLPLAQD---YPHAYEDGIGPETGGMGSIS 249 (486)
T ss_pred eEEEEEccCCe-------------------------EEEEEEEECCCeEEEeeeeEe---ecceecCCCCCCCCCCcccC
Confidence 89999999997 999999976544332332221 12344444333334444455
Q ss_pred C----CCCCCCCHHHHHHHHHHHHHHHHHcC----C--cceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcC
Q 004630 651 P----PPASIMSTEALDKCKQRIELIANALQ----L--EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQ 720 (741)
Q Consensus 651 P----a~~~~l~~e~~~~i~~~a~~~~~aLg----~--~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~ 720 (741)
| .|. ++++..+++.++++.++++|+ + +|+++++++++.++| ++|+|+|.+.|=..++.+-+..
T Consensus 250 p~~~~~P~--~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l---- 322 (486)
T PRK05784 250 GPGELLPF--INEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRI---- 322 (486)
T ss_pred CccccCCC--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhc----
Confidence 5 442 567777777788887776665 3 499999999982234 9999999999943333322221
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 004630 721 PPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 721 ~~~~p~~l~~~li~~a~~ 738 (741)
-.+|++.++..+..
T Consensus 323 ----~~dl~~~~~~~~~g 336 (486)
T PRK05784 323 ----ESDFGELFELAATG 336 (486)
T ss_pred ----cCCHHHHHHHHHcC
Confidence 13677777766553
No 58
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.86 E-value=4.3e-20 Score=207.36 Aligned_cols=244 Identities=16% Similarity=0.165 Sum_probs=162.1
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeE-EEeCccccCCchh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD-VRRKEDLLKTPIV 499 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~-~v~~~e~~~~~~~ 499 (741)
+.+|.|++...+... . .+...|+..|+|..|++..++.+|.||..||++ |+++|||+|+++ .+...+
T Consensus 64 ~~id~Vi~~~d~~l~-~-~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~---l~~~gIptp~~~~~~~~~~------- 131 (435)
T PRK06395 64 NNVDIVFVGPDPVLA-T-PLVNNLLKRGIKVASPTMEAAMIETSKMFMRYL---MERHNIPGNINFNACFSEK------- 131 (435)
T ss_pred hCCCEEEECCChHHH-H-HHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHH---HHHCCcCCCcccceeCChH-------
Confidence 468999986433221 1 334466678999999999999999999999998 999999998554 443221
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-cchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecc
Q 004630 500 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578 (741)
Q Consensus 500 ~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI 578 (741)
+. .....++ +||+||||..+.+|+||.++++. +++.++..+....+.. ...+||||||
T Consensus 132 e~-~~~~~~~-~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~-------------------~~~viIEEfl 190 (435)
T PRK06395 132 DA-ARDYITS-MKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDR-------------------DGVVLIEKKM 190 (435)
T ss_pred HH-HHHHHhh-CCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCC-------------------CCcEEEEeec
Confidence 11 2223466 69999999999999999999643 3444322232222111 4679999999
Q ss_pred cCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccc-cccCCCceEEc----CCC
Q 004630 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEE-KFQGGTGINLT----PPP 653 (741)
Q Consensus 579 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~-ky~~g~~~~~~----Pa~ 653 (741)
+|. |+++.++.+++... .++..+- ....|+-+. .+.+|. ..+. |.+
T Consensus 191 ~G~-------------------------E~Svd~~~dg~~~~-~l~~~~d--~~r~~~~d~gp~tGgm-G~~s~~~~~~p 241 (435)
T PRK06395 191 TGE-------------------------EFSLQAFSDGKHLS-FMPIVQD--YKRAYEGDHGPNTGGM-GSISDRDFSLP 241 (435)
T ss_pred CCc-------------------------eEEEEEEEcCCeEE-Eecccce--eeecccCCCCCccCCC-ccccCCCCCCC
Confidence 997 99999887554433 3333211 011222211 122332 2233 333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcC-----CcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHH
Q 004630 654 ASIMSTEALDKCKQRIELIANALQ-----LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQF 728 (741)
Q Consensus 654 ~~~l~~e~~~~i~~~a~~~~~aLg-----~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l 728 (741)
.+++++.+++++++++++++|+ ++|+..++|+++. +.+||+|+|+++|=...-.+-+ +.+.||
T Consensus 242 --~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~--~gp~ViE~n~R~gdpe~~~il~--------~l~~d~ 309 (435)
T PRK06395 242 --FLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP--NGVKVIEINARFADPEGINVLY--------LLKSDF 309 (435)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC--CCcEEEEEeCCCCCccHHhhhh--------hcccCH
Confidence 2789999999999999999999 5788889999983 4599999999999543321111 223467
Q ss_pred HHHHHHHHHh
Q 004630 729 FRKVLDLGSE 738 (741)
Q Consensus 729 ~~~li~~a~~ 738 (741)
++.++..+..
T Consensus 310 ~~~~~~~~~g 319 (435)
T PRK06395 310 VETLHQIYSG 319 (435)
T ss_pred HHHHHHHhcC
Confidence 7777666543
No 59
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.85 E-value=5.7e-20 Score=204.95 Aligned_cols=214 Identities=23% Similarity=0.257 Sum_probs=153.5
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHH-HHcCCCccCeEEEeCccccCCchh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHL-ADLGVLTINKDVRRKEDLLKTPIV 499 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l-~~~GIp~p~~~~v~~~e~~~~~~~ 499 (741)
..+|+|++..... .. ..+ ..++..|+|. .++..+..+|+||..+|++ | +++|||+|+|..+.+.+
T Consensus 74 ~~id~vi~~~e~~-~~-~~~-~~l~~~g~~~-~~~~~a~~~~~dK~~~k~~---l~~~~gip~p~~~~~~s~~------- 139 (395)
T PRK09288 74 EKPDYIVPEIEAI-AT-DAL-VELEKEGFNV-VPTARATRLTMNREGIRRL---AAEELGLPTSPYRFADSLE------- 139 (395)
T ss_pred hCCCEEEEeeCcC-CH-HHH-HHHHhcCCee-CCCHHHHHHHhCHHHHHHH---HHHhCCCCCCCceEECCHH-------
Confidence 3579888865321 11 123 3456679885 4788999999999999998 7 57899999999887533
Q ss_pred hHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc
Q 004630 500 DIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE 579 (741)
Q Consensus 500 ~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~ 579 (741)
.+.++..++ +||+||||..+++|.||++|++.+++.+ +++.+.... + .....+||||||+
T Consensus 140 -~l~~~~~~~-g~P~VvKP~~g~~s~Gv~~v~~~~el~~---~~~~~~~~~------~---------~~~~~~lvEefi~ 199 (395)
T PRK09288 140 -ELRAAVEEI-GYPCVVKPVMSSSGKGQSVVRSPEDIEK---AWEYAQEGG------R---------GGAGRVIVEEFID 199 (395)
T ss_pred -HHHHHHHhc-CCCEEEEeCCCcCCCCeEEECCHHHHHH---HHHHHHhhc------c---------ccCCCEEEEEecC
Confidence 234455678 6999999999999999999999999885 444443220 0 0036799999999
Q ss_pred CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCC-CceecCceEEEccCCccccccccccCCCceEEcCCCCCCCC
Q 004630 580 TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG-SMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMS 658 (741)
Q Consensus 580 G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~-~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~ 658 (741)
+. .|+++.++.+++ .....++....... +.......|++ ++
T Consensus 200 ~~------------------------~E~sv~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~p~~---l~ 241 (395)
T PRK09288 200 FD------------------------YEITLLTVRAVDGGTHFCAPIGHRQED-----------GDYRESWQPQP---MS 241 (395)
T ss_pred CC------------------------EEEEEEEEEcCCCCEEEecCcccEEEC-----------CEEEEEECCCC---CC
Confidence 43 399998887654 33322221111000 11112245665 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCC
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~ 708 (741)
+++.+++++++++++++||..|++++|||++. +++||+|+|++||-+.
T Consensus 242 ~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~--~~~~viEinpR~~~~~ 289 (395)
T PRK09288 242 PAALEEAQEIAKKVTDALGGRGLFGVELFVKG--DEVYFSEVSPRPHDTG 289 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC--CeEEEEEecCCCCCCc
Confidence 99999999999999999999999999999984 4799999999998653
No 60
>PRK07206 hypothetical protein; Provisional
Probab=99.85 E-value=5.9e-20 Score=206.25 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=151.5
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|.|++.. .-.-...+.+.+.+|+|+ |++..++..+.||..|+++ |+++|||+|+++.+...+
T Consensus 69 ~~~d~vi~~~---e~~~~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~---l~~~gi~~p~~~~~~~~~-------- 133 (416)
T PRK07206 69 LGPEAIIAGA---ESGVELADRLAEILTPQY-SNDPALSSARRNKAEMINA---LAEAGLPAARQINTADWE-------- 133 (416)
T ss_pred cCCCEEEECC---CccHHHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHH---HHHcCCCcccEEecCCHH--------
Confidence 4678888842 111124466778899985 6778888999999999998 999999999998876432
Q ss_pred HHHHHHhhcCCC---cEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeec
Q 004630 501 IWHELTSKLQCK---TLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577 (741)
Q Consensus 501 ~~~~~~~~lg~~---PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEef 577 (741)
.+.++.+++ +| |+||||.++++|.||.+|++.++|.. +++++.... +.+. .....+|||||
T Consensus 134 e~~~~~~~~-g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~---~~~~~~~~~--~~~~----------~~~~~~lvEe~ 197 (416)
T PRK07206 134 EAEAWLREN-GLIDRPVVIKPLESAGSDGVFICPAKGDWKH---AFNAILGKA--NKLG----------LVNETVLVQEY 197 (416)
T ss_pred HHHHHHHhc-CCCCCCEEEeCCCCCCCCCEEEeCCHHHHHH---HHHHHHhcc--ccCC----------CCCCeEEEEEc
Confidence 233445666 57 99999999999999999999999885 444443220 0000 01468999999
Q ss_pred ccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCcccccccccc-CCCc----eEEcCC
Q 004630 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ-GGTG----INLTPP 652 (741)
Q Consensus 578 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~-~g~~----~~~~Pa 652 (741)
|+|. |+++.++..+|..... ..... ..+.. .+.. ....|
T Consensus 198 i~G~-------------------------E~sv~~~~~~G~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~p- 241 (416)
T PRK07206 198 LIGT-------------------------EYVVNFVSLDGNHLVT-EIVRY---------HKTSLNSGSTVYDYDEFLD- 241 (416)
T ss_pred cccE-------------------------EEEEEEEEECCEEEEE-EeEEe---------eecccCCCCceecccccCC-
Confidence 9997 8888877655543211 11110 00000 1111 01123
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCc-ceeEEEEEEEcCCCcEEEEecCCCCCCCCCc
Q 004630 653 PASIMSTEALDKCKQRIELIANALQLE-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710 (741)
Q Consensus 653 ~~~~l~~e~~~~i~~~a~~~~~aLg~~-G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S 710 (741)
.+.+..+++.+.+.+++++||+. |++++||+++. +| ++++|||++||-+..+
T Consensus 242 ----~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~g-~~liEin~R~~G~~~~ 294 (416)
T PRK07206 242 ----YSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-DG-PRLIEIGARLDGGLHP 294 (416)
T ss_pred ----ccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-CC-CEEEEECCccCCCCcc
Confidence 24677889999999999999995 99999999984 34 8999999999866544
No 61
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.85 E-value=8.7e-21 Score=216.12 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=167.6
Q ss_pred CccCCCCCCCeEEE--ecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHh---hC-C
Q 004630 1 MSKQGFITVPSFLL--QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL---EG-I 74 (741)
Q Consensus 1 l~~~GIp~p~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~---~~-~ 74 (741)
|+++|||+||+... .+. +++.++++++ +||+||||..+|+|+||.++++.+|+.+++..... .. .
T Consensus 123 l~~~GVpv~p~~~~~v~~~----~e~~~~a~~i-----gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~ 193 (499)
T PRK08654 123 MKKAGVPVLPGTEEGIEDI----EEAKEIAEEI-----GYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFG 193 (499)
T ss_pred HHHcCcCCCCCcCcCCCCH----HHHHHHHHHh-----CCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCC
Confidence 46899999998753 332 2666666654 45999999999999999999999997666554321 01 2
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
++.++||+||.|++|++|.++.++.|+ .+.+.. .. +....++.. .....|+ .++++
T Consensus 194 ~~~v~vE~~I~~~r~ieVqvl~d~~G~---vv~l~~--re---------------csiqrr~qk---~ie~~Pa~~l~~~ 250 (499)
T PRK08654 194 DSTVFIEKYLEKPRHIEIQILADKHGN---VIHLGD--RE---------------CSIQRRHQK---LIEEAPSPIMTPE 250 (499)
T ss_pred CCeEEEEeCCCCCcEEEEEEEEcCCCC---EEEEee--ec---------------cccccCccc---eEEECCCCCCCHH
Confidence 468999999987799999999865432 232211 10 111111111 2234565 48999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.+++++||+.|.++|||++ ++|++||+|||||++.+. +.....+|+
T Consensus 251 ~~~~l~~~A~~l~~algy~g~gtVEfl~------------------~~g~~yflEiNpRlqveh----~vte~~tGv--- 305 (499)
T PRK08654 251 LRERMGEAAVKAAKAINYENAGTVEFLY------------------SNGNFYFLEMNTRLQVEH----PITEMVTGI--- 305 (499)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEE------------------ECCcEEEEEEECCCCCCC----ceeehhhCC---
Confidence 9999999999999999999999999987 357899999999998653 112245688
Q ss_pred HHHHHHHHHHHhhCCCCC--CCCCccccCCCCCCCCCCccccccccCceEEEEEecCCc
Q 004630 234 NILRTIIGHACSRFPNLA--SYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 290 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S 290 (741)
+++..+|+.|+....... .....++.+..|+.+++|...|.|+.|+.+-.-.-||..
T Consensus 306 Dlv~~~i~~A~G~~l~~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G~i~~~~~p~~~~ 364 (499)
T PRK08654 306 DIVKEQIKIAAGEELSFKQEDITIRGHAIECRINAEDPLNDFAPSPGKIKRYRSPGGPG 364 (499)
T ss_pred CHHHHHHHHhcCCCCCCcccccccceEEEEEEEEeecCccCcCCCCCeEEEEEcCCCCC
Confidence 567778888877643332 233457999999999999999999999977555556654
No 62
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.85 E-value=6.7e-20 Score=202.77 Aligned_cols=242 Identities=18% Similarity=0.242 Sum_probs=178.1
Q ss_pred CccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhH
Q 004630 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~ 501 (741)
..|.++|-. |..-||...+.+++..|+-++|+++.+++.+.||..++++ ++++|||++|+..- +.. . .+.
T Consensus 74 gadai~pGy-gflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~---~~~aGVP~vpgs~~----~~~-~-~ee 143 (449)
T COG0439 74 GADAIHPGY-GFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRL---MAKAGVPVVPGSDG----AVA-D-NEE 143 (449)
T ss_pred CCceEcccc-hhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHH---HHHcCCCcCCCCCC----CcC-C-HHH
Confidence 457776665 4566999999999999999999999999999999999999 99999999998611 111 1 123
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHH-HHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 502 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEE-CLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 502 ~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~-a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
..++.+++ +|||+|||+.+|||+||.+|++.++|.+.+..+.. +... .+ ++.+++|+||++
T Consensus 144 ~~~~a~~i-GyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~---------fg--------~~~v~iEk~i~~ 205 (449)
T COG0439 144 ALAIAEEI-GYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAA---------FG--------NPRVYLEKFIEG 205 (449)
T ss_pred HHHHHHHc-CCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHh---------cC--------CCcEEeeeeccC
Confidence 45667889 59999999999999999999999999864333322 2211 11 566999999999
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHH
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e 660 (741)
. +.+++.++++......-.++... .+.. + .....+..|++. ++++
T Consensus 206 ~------------------------rhievqv~gD~~g~~i~l~eRdc----siqr---r--~qkvieeapsp~--~~~e 250 (449)
T COG0439 206 P------------------------RHIEVQVLGDGHGNVIHLGERDC----SIQR---R--HQKVIEEAPSPL--LTEE 250 (449)
T ss_pred C------------------------ceEEEEEEEcCcccEEEEEeccC----CCcC---C--ccceeeecCCCC--CCHH
Confidence 7 58899999986433222211110 1111 1 122344566654 7899
Q ss_pred HHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCC-CCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004630 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV-PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737 (741)
Q Consensus 661 ~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~-Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~ 737 (741)
..+++-+.+.++++.+|.+|.+.++|+++. +|++||+|+||+ -+-.+.+ ++ .+..|++...|..|.
T Consensus 251 ~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~~yfiEmN~Rlqveh~vt---e~-------vtGiDlv~~qi~ia~ 317 (449)
T COG0439 251 LREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGEFYFIEMNTRLQVEHPVT---EM-------VTGIDLVKEQIRIAA 317 (449)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCCEEEEEEecccccCccce---eh-------hhhhhHHHHHHHHHc
Confidence 999999999999999999999999999995 689999999995 3333322 11 233588888888765
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.84 E-value=1.7e-19 Score=221.50 Aligned_cols=221 Identities=19% Similarity=0.269 Sum_probs=164.4
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEE--EeCccccCCch
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDV--RRKEDLLKTPI 498 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~--v~~~e~~~~~~ 498 (741)
..+|.|+|. .|...|+..++..++.+|++++|++..+..+|.||..++++ ++++|||+|++.. +.+.
T Consensus 77 ~~iDaI~Pg-yGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~---l~~~GVPv~P~~~~~v~s~------- 145 (1146)
T PRK12999 77 AGVDAIHPG-YGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNA---AIKAGVPVIPGSEGPIDDI------- 145 (1146)
T ss_pred hCCCEEEeC-CCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHH---HHHCCCCCCCCcccCCCCH-------
Confidence 457889885 46777888899999999999999999999999999999998 9999999988764 3221
Q ss_pred hhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecc
Q 004630 499 VDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578 (741)
Q Consensus 499 ~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI 578 (741)
+.+.++.+++ +||+||||+.+|+|+||.+|++.+||.++ ++.+.... . .+.+ ++.++||+||
T Consensus 146 -eea~~~a~~i-GyPvVVKP~~GgGGrGv~vV~~~eEL~~a---~~~a~~ea-~----~~fg--------~~~vlVEefI 207 (1146)
T PRK12999 146 -EEALEFAEEI-GYPIMLKASAGGGGRGMRIVRSEEELEEA---FERAKREA-K----AAFG--------NDEVYLEKYV 207 (1146)
T ss_pred -HHHHHHHHHh-CCCEEEEECCCCCCCCeEEeCCHHHHHHH---HHHHHHHH-H----hhcC--------CCcEEEecCC
Confidence 2234456788 69999999999999999999999999853 33332210 0 0001 4679999999
Q ss_pred cCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 579 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
+|. +|+++.++++. |....+... ...+ ...+ .......|+. .+
T Consensus 208 ~g~------------------------~~ieVqvl~D~~G~vv~l~er-----dcsv---qrr~--qk~ie~aP~~--~L 251 (1146)
T PRK12999 208 ENP------------------------RHIEVQILGDKHGNVVHLYER-----DCSV---QRRH--QKVVEIAPAP--GL 251 (1146)
T ss_pred CCC------------------------eEEEEEEEEECCCCEEEEEcc-----ccce---eecC--ccEEEEcCCC--CC
Confidence 985 48899888864 332221100 0000 0000 0112245553 27
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC
Q 004630 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT 707 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t 707 (741)
++++.+++++.|.++++++|+.|.+++||+++. +|++||+||||+++.+
T Consensus 252 ~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~-dg~~yfIEINpRlqve 300 (1146)
T PRK12999 252 SEELRERICEAAVKLARAVGYVNAGTVEFLVDA-DGNFYFIEVNPRIQVE 300 (1146)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC-CCCEEEEEEECCCCCc
Confidence 899999999999999999999999999999995 5789999999998754
No 64
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.84 E-value=7.4e-20 Score=198.69 Aligned_cols=202 Identities=24% Similarity=0.247 Sum_probs=147.8
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|+++|...+...-...+...|+..|+++++++..+..++.||..|+++ |+++|||+|++..+.+.+
T Consensus 68 ~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~---l~~~gip~p~~~~~~~~~-------- 136 (326)
T PRK12767 68 EKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEF---LKENGIPTPKSYLPESLE-------- 136 (326)
T ss_pred hCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHH---HHHcCCCCCCEEcccCHH--------
Confidence 468999987533222233445677888999999999999999999999998 999999999998775432
Q ss_pred HHHH--HHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecc
Q 004630 501 IWHE--LTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFV 578 (741)
Q Consensus 501 ~~~~--~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI 578 (741)
.+.+ ...++ +||+|+||.++++|.||.++++.+++.. ++.. ...++||+||
T Consensus 137 ~~~~~~~~~~~-~~P~viKP~~g~~s~gv~~v~~~~el~~---~~~~-----------------------~~~~lvqeyi 189 (326)
T PRK12767 137 DFKAALAKGEL-QFPLFVKPRDGSASIGVFKVNDKEELEF---LLEY-----------------------VPNLIIQEFI 189 (326)
T ss_pred HHHhhhhcccC-CCCEEEEeCCCCCccCeEEeCCHHHHHH---HHHh-----------------------CCCeEEEecc
Confidence 1222 23567 6999999999999999999999888874 3221 2479999999
Q ss_pred cCcchhhcccccccchhhhhhcCCCceeEEEEEEEcC-CCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 579 ETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 579 ~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~-~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
+|+ |+++.++.+ +|..+......++. ..+|........
T Consensus 190 ~G~-------------------------e~~v~~~~~~~G~~~~~~~~~~~~-----------~~~g~~~~~~~~----- 228 (326)
T PRK12767 190 EGQ-------------------------EYTVDVLCDLNGEVISIVPRKRIE-----------VRAGETSKGVTV----- 228 (326)
T ss_pred CCc-------------------------eEEEEEEEcCCCCEEEEEEeeeee-----------ecCCceeEEEEc-----
Confidence 997 999988876 55544332221110 111211111111
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCC
Q 004630 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~ 706 (741)
+ .+++++.+.+++++||+.|++++||+++ +|++|++||||+++-
T Consensus 229 ~---~~~i~~~~~~i~~~lg~~G~~~vd~~~~--~g~~~viEiNpR~~g 272 (326)
T PRK12767 229 K---DPELFKLAERLAEALGARGPLNIQCFVT--DGEPYLFEINPRFGG 272 (326)
T ss_pred C---CHHHHHHHHHHHHhcCCeeeEEEEEEEE--CCeEEEEEEeCCCCC
Confidence 1 2578899999999999999999999998 378999999997763
No 65
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.84 E-value=6.8e-20 Score=208.18 Aligned_cols=232 Identities=17% Similarity=0.188 Sum_probs=162.0
Q ss_pred CccCCCCCCCeE--EEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh---C-C
Q 004630 1 MSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-I 74 (741)
Q Consensus 1 l~~~GIp~p~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~---~-~ 74 (741)
|+++|||+||+. .+.+.+ ++.++++++ +||+||||..+++|+||.++++.+|+..++.....+ . .
T Consensus 126 l~~~GIp~~p~~~~~v~~~~----e~~~~~~~i-----gyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~ 196 (467)
T PRK12833 126 ARRAGVPTVPGSDGVVASLD----AALEVAARI-----GYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFG 196 (467)
T ss_pred HHHcCCCCCCCcCcCcCCHH----HHHHHHHHh-----CCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcC
Confidence 468999999986 555433 566666554 559999999999999999999999976655433211 1 2
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
++.++||+||+|++|++|.+++++. ..+.+. +.. +....++.. .....|+ .++++
T Consensus 197 ~~~vlvEefi~~~~ei~v~v~~dg~----~~~~~~--~~~---------------~~~~r~~~k---i~e~~p~~~l~~~ 252 (467)
T PRK12833 197 DGGVYLERFIARARHIEVQILGDGE----RVVHLF--ERE---------------CSLQRRRQK---ILEEAPSPSLTPA 252 (467)
T ss_pred CCcEEEEecCCCCEEEEEEEEeCCC----cEEEEE--Eee---------------cccccCCcc---EEEECCCCCCCHH
Confidence 4679999999856999999997532 112211 111 111111111 1223443 68999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.+++++||++|.+++||+++ +++|++||+|||||++.+. +.....+|+|+
T Consensus 253 ~~~~l~~~a~~~~~alg~~G~~~vEf~~~----------------~~~g~~~~iEvNpR~~~~~----~~te~~tGvdl- 311 (467)
T PRK12833 253 QRDALCASAVRLARQVGYRGAGTLEYLFD----------------DARGEFYFIEMNTRIQVEH----PVTEAITGIDL- 311 (467)
T ss_pred HHHHHHHHHHHHHHHcCCcCcceEEEEEe----------------cCCCCEEEEEEECCCCcch----hhhHHHhCCCH-
Confidence 99999999999999999999999999973 2468899999999997542 22334579965
Q ss_pred HHHHHHHHHHHhhCCCCC--CCCCccccCCCCCCCCCCccccccccCceEEEEEecC
Q 004630 234 NILRTIIGHACSRFPNLA--SYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGG 288 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG 288 (741)
+..+++.|++...... .....++.+..|+.++++...|.++.++.+-...-+|
T Consensus 312 --~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~g~i~~~~~~~~ 366 (467)
T PRK12833 312 --VQEMLRIADGEPLRFAQGDIALRGAALECRINAEDPLRDFFPNPGRIDALVWPQG 366 (467)
T ss_pred --HHHHHHHHCCCCCCCCccccCcceEEEEEEEecccCCCCcccCCCEEEEEEcCCC
Confidence 4446777776644322 2344578899999999998899999888654444344
No 66
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.84 E-value=3.9e-20 Score=210.44 Aligned_cols=233 Identities=17% Similarity=0.107 Sum_probs=164.1
Q ss_pred CccCCCCCCCeEE--EecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh----CC
Q 004630 1 MSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GI 74 (741)
Q Consensus 1 l~~~GIp~p~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~----~~ 74 (741)
|+++|||+||+.. +.+. +++.++++++ +||+||||..+++|+||.++++.+|+.+++..+..+ ..
T Consensus 122 l~~~GIp~pp~~~~~~~~~----~e~~~~~~~i-----gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~ 192 (472)
T PRK07178 122 MIKAGVPVTPGSEGNLADL----DEALAEAERI-----GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFG 192 (472)
T ss_pred HHHCCCCCCCCcCcCCCCH----HHHHHHHHHc-----CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcC
Confidence 4679999999864 3332 2555556544 559999999999999999999999986655443221 12
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
+..++||+||.|++|++|.++.+.+|. .+.+. +. .++...++.. .....|+ .++++
T Consensus 193 ~~~v~iE~~i~~~~eiev~v~~d~~G~---~v~~~--er---------------~~s~~~~~~~---~~e~~P~~~l~~~ 249 (472)
T PRK07178 193 SAEVFLEKCIVNPKHIEVQILADSHGN---VVHLF--ER---------------DCSIQRRNQK---LIEIAPSPQLTPE 249 (472)
T ss_pred CCCEEEEEcCCCCeEEEEEEEEECCCC---EEEEE--cc---------------ccceEecCcc---eEEECCCCCCCHH
Confidence 457999999977799999999865432 22211 11 0111111111 1233455 68999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.+++++||+.|.+++||++ +++|++||+|||||++.+. +.....+|+|+
T Consensus 250 ~~~~i~~~a~~~~~aLg~~g~~~vEf~~-----------------d~~g~~y~iEiNpRl~~~~----~~te~~tGvdl- 307 (472)
T PRK07178 250 QRAYIGDLAVRAAKAVGYENAGTVEFLL-----------------DADGEVYFMEMNTRVQVEH----TITEEITGIDI- 307 (472)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEEE-----------------eCCCCEEEEEEeCCcCCCc----cceeeeeCcCH-
Confidence 9999999999999999999999999997 4568899999999997542 22234579865
Q ss_pred HHHHHHHHHHHhhCCCC--CCCCCccccCCCCCCCCCCccccccccCceEEEEEecCC
Q 004630 234 NILRTIIGHACSRFPNL--ASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGD 289 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~ 289 (741)
+..+++.|+...... ......++.+..|+.+++|..+|.|+.++..-+..-+|.
T Consensus 308 --~~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g~i~~~~~~~~~ 363 (472)
T PRK07178 308 --VREQIRIASGLPLSYKQEDIQHRGFALQFRINAEDPKNDFLPSFGKITRYYAPGGP 363 (472)
T ss_pred --HHHHHHHHCCCCCCCccccCCcceEEEEEEEeeecCCcCEecCceEEEEEEcCCCC
Confidence 446677777664332 233445799999999999999999998887655544554
No 67
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.83 E-value=9.4e-20 Score=207.51 Aligned_cols=236 Identities=16% Similarity=0.131 Sum_probs=164.3
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhH----hhCCCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII----LEGIDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~----~~~~~~ 76 (741)
|+++|||+||+......+ +.+++.++++.+ +||+||||..+++|+||.++++.+|+..++.... ....++
T Consensus 122 l~~~gIpvpp~~~~~~~~-~~~~~~~~~~~i-----gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~ 195 (478)
T PRK08463 122 MKKNGIPIVPGTEKLNSE-SMEEIKIFARKI-----GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNND 195 (478)
T ss_pred HHHcCCCCCCCccccCCC-CHHHHHHHHHHh-----CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 467999999965532111 123555566544 5699999999999999999999999766554321 112356
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~ 155 (741)
.++||+||.|++|+++.+++++.|. .+.+ ++. -++...++. ......|+ .+++++.
T Consensus 196 ~vlvEefI~~~~~iev~v~~d~~g~---v~~~--~er---------------~~s~~~~~~---~~ie~~P~~~l~~~~~ 252 (478)
T PRK08463 196 EVFMEKYVVNPRHIEFQILGDNYGN---IIHL--CER---------------DCSIQRRHQ---KVIEIAPCPSISDNLR 252 (478)
T ss_pred cEEEEecCCCCeEEEEEEEEcCCCC---EEEE--ecc---------------CCccccccC---ceEEECCCCCCCHHHH
Confidence 8999999987699999999764322 1211 111 011111111 12234565 4899999
Q ss_pred HHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHH
Q 004630 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 235 (741)
Q Consensus 156 ~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~l 235 (741)
++|++.|.+++++||+.|++++||++ +++|++||+|||||++.+. +.....+|+| +
T Consensus 253 ~~i~~~a~~~~~alg~~g~~~vEf~~-----------------~~~~~~y~iEiN~R~~~~~----~~te~~tGid---l 308 (478)
T PRK08463 253 KTMGVTAVAAAKAVGYTNAGTIEFLL-----------------DDYNRFYFMEMNTRIQVEH----GVTEEITGID---L 308 (478)
T ss_pred HHHHHHHHHHHHHcCCCCceeEEEEE-----------------cCCCCEEEEEEECCcCCCc----ceeeHhhCCC---H
Confidence 99999999999999999999999997 4568899999999998653 2223457995 5
Q ss_pred HHHHHHHHHhhCCCC--CCCCCccccCCCCCCCCCCccccccccCceEEEEEecCC
Q 004630 236 LRTIIGHACSRFPNL--ASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGD 289 (741)
Q Consensus 236 l~~ii~~a~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~ 289 (741)
++.+|+.|+.....+ ......++.+..||.++++...|.|+.++.+-...-+|.
T Consensus 309 v~~~ir~a~G~~l~~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~G~~~~~~~~~~~ 364 (478)
T PRK08463 309 IVRQIRIAAGEILDLEQSDIKPRGFAIEARITAENVWKNFIPSPGKITEYYPALGP 364 (478)
T ss_pred HHHHHHHHcCCCCCCccccCCCceEEEEEEEeccCcccCeecCCcEEEEEEcCCCC
Confidence 666677777764332 123345789999999999999999999986655444443
No 68
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.83 E-value=1e-19 Score=202.17 Aligned_cols=197 Identities=16% Similarity=0.040 Sum_probs=136.5
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
++++|||||+|..+...+ .+++.+.++. ..++||+||||+.+|+|+|+++|++.+|+..++.+++. ...++|
T Consensus 150 ~~~aGIPtpp~~~~~~~~--~eel~~~~~~---~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~---~~~viV 221 (493)
T PRK06524 150 ANEAGVPSVPHVLGRVDS--YDELSALAHG---AGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVG---QPEIKV 221 (493)
T ss_pred HHHcCCCCCCcccccCCC--HHHHHHHHHh---ccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcC---CCCEEE
Confidence 357999999998764222 1244433332 12567999999999999999999999998776665532 357999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~ 160 (741)
|+||.| +|++|.++.+.+|. .+...+.++. + ...+.. |..+......+|+.+++++.+++++
T Consensus 222 Ee~I~G-rEitVev~vd~dG~---Vv~~~~~e~v--g--------~~Ei~~----yr~G~~~~~i~PA~L~~ei~eeIqe 283 (493)
T PRK06524 222 MKRIRN-VEVCIEACVTRHGT---VIGPAMTSLV--G--------YPELTP----YRGGWCGNDIWPGALPPAQTRKARE 283 (493)
T ss_pred EeccCc-EEEEEEEEEeCCCC---EEeccccccc--c--------ceEEEE----ccCCeEEEEEccCCCCHHHHHHHHH
Confidence 999997 99999988764432 1111111110 0 001111 2222212357899999999999999
Q ss_pred HHHHHHHHh---CCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHH
Q 004630 161 GASLLFQRL---GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237 (741)
Q Consensus 161 ~a~~~~~aL---g~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~ 237 (741)
+|.+++++| ||+|+++|||+++ .++|++||+||||||+- .+.+..++..+|.+++.++.
T Consensus 284 iA~ka~~aL~~lG~~Gv~rVDFfvd----------------~ddgevYfnEINPR~~G--~tpmt~~~s~Agad~p~fll 345 (493)
T PRK06524 284 MVRKLGDVLSREGYRGYFEVDLLHD----------------LDADELYLGEVNPRLSG--ASPMTNLTTEAYADMPLFLF 345 (493)
T ss_pred HHHHHHHHhhcCCCEEEEEEEEEEE----------------CCCCeEEEEEEeCCccc--ccccchhhhccCCChhHHHH
Confidence 999999998 8999999999982 13588999999999983 33344444456787777776
Q ss_pred HHHH
Q 004630 238 TIIG 241 (741)
Q Consensus 238 ~ii~ 241 (741)
++..
T Consensus 346 h~~a 349 (493)
T PRK06524 346 HLLE 349 (493)
T ss_pred HHHH
Confidence 6644
No 69
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.83 E-value=2.3e-19 Score=218.27 Aligned_cols=219 Identities=18% Similarity=0.164 Sum_probs=157.2
Q ss_pred HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 004630 439 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518 (741)
Q Consensus 439 ~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP 518 (741)
.+..+.+.+|+| |++..++.+|+||..||++ |+++|||+|++..+...+ .+.++...+ +||+||||
T Consensus 84 ~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~---L~~~GIp~P~~~~v~~~~--------e~~~~~~~~-~~PvVVKP 149 (887)
T PRK02186 84 VASEVARRLGLP--AANTEAIRTCRDKKRLART---LRDHGIDVPRTHALALRA--------VALDALDGL-TYPVVVKP 149 (887)
T ss_pred HHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHH---HHHcCCCCCCEEEeCCHH--------HHHHHHHhC-CCCEEEEe
Confidence 566788999999 6889999999999999998 999999999999886532 233445678 69999999
Q ss_pred CCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhh
Q 004630 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598 (741)
Q Consensus 519 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 598 (741)
.++++|.||.+|++.+|+.++ ++..... ....+||||||+|+
T Consensus 150 ~~g~gS~GV~~v~~~~el~~a---~~~~~~~------------------~~~~~lvEEfI~G~----------------- 191 (887)
T PRK02186 150 RMGSGSVGVRLCASVAEAAAH---CAALRRA------------------GTRAALVQAYVEGD----------------- 191 (887)
T ss_pred CCCCCCCCeEEECCHHHHHHH---HHHHHhc------------------CCCcEEEeecccCC-----------------
Confidence 999999999999999998753 3333221 04689999999997
Q ss_pred hcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 004630 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL 678 (741)
Q Consensus 599 ~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~ 678 (741)
|+++.++..++..... +..+.. ......|. ...+..|++ ++++..+++.+.+.+++++||+
T Consensus 192 --------E~sVe~i~~~g~~~i~-~i~~k~-----~~~~~~~v--e~g~~~P~~---l~~~~~~~l~~~~~~~l~aLG~ 252 (887)
T PRK02186 192 --------EYSVETLTVARGHQVL-GITRKH-----LGPPPHFV--EIGHDFPAP---LSAPQRERIVRTVLRALDAVGY 252 (887)
T ss_pred --------cEEEEEEEECCcEEEE-EEEeee-----cCCCCCeE--EeccccCCC---CCHHHHHHHHHHHHHHHHHcCC
Confidence 8888877665543221 111100 00000111 012356776 6889999999999999999999
Q ss_pred c-ceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004630 679 E-GFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737 (741)
Q Consensus 679 ~-G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~ 737 (741)
+ |++++||+++. +.+||+|||++++-+. ++++...+-| .++++.+++.++
T Consensus 253 ~~G~~hvE~~~t~--~g~~liEIn~R~~G~~---i~~li~~a~G----vd~~~~~i~~~l 303 (887)
T PRK02186 253 AFGPAHTELRVRG--DTVVIIEINPRLAGGM---IPVLLEEAFG----VDLLDHVIDLHL 303 (887)
T ss_pred CcCceEEEEEEEC--CCEEEEEECCCCCCcc---HHHHHHHHHC----cCHHHHHHHHhC
Confidence 6 99999999983 5699999999877432 3333332211 245566665544
No 70
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.83 E-value=1e-19 Score=180.23 Aligned_cols=180 Identities=22% Similarity=0.230 Sum_probs=116.3
Q ss_pred HhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHH
Q 004630 461 TCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYV 540 (741)
Q Consensus 461 l~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~ 540 (741)
.|+||..|+++ ++++|||+|++..+...+ .+..+...+ +||+||||..+++|.||.++++.++|..+.
T Consensus 1 ~~~dK~~~~~~---~~~~gv~~P~~~~~~~~~--------~~~~~~~~~-~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~ 68 (184)
T PF13535_consen 1 RCNDKYRMREL---LKKAGVPVPKTRIVDSEE--------ELRAFAEDL-GFPFVVKPVDGSGSRGVFIVHSPEELEAAL 68 (184)
T ss_dssp -TCCHHHHHHH---HHHHTS----EEEECSHH--------HHHHHHHHS-SSSEEEEESS-STTTT-EEESSHHHHHHHH
T ss_pred CCCCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHc-CCCEEEEcCccccCCCEEEeCCHHHHHHHH
Confidence 47899999998 999999999999887542 345566778 699999999999999999999999999755
Q ss_pred HHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCce
Q 004630 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH 620 (741)
Q Consensus 541 ~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~ 620 (741)
+.+...... ....+|||+||+|. |+++.++..+|...
T Consensus 69 ~~~~~~~~~------------------~~~~~ivqe~i~g~-------------------------e~~~~~~~~~G~~~ 105 (184)
T PF13535_consen 69 AEIREDSPL------------------GNGPVIVQEYIPGD-------------------------EYSVDGVVDDGEVV 105 (184)
T ss_dssp HHHHHHHS-------------------HSSSEEEEE---SE-------------------------EEEEEEEEETTEEE
T ss_pred HHHHHhccc------------------CCccEEEEEeeeee-------------------------eEEEEEEEEcceEE
Confidence 444433210 03689999999996 88887665555543
Q ss_pred ecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCC-cceeEEEEEEEcCCCcEEEEe
Q 004630 621 SLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQL-EGFSRIDAFVNVDNGEVLIIE 699 (741)
Q Consensus 621 ~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~-~G~~rvDf~v~~~~g~~~viE 699 (741)
............. ++... .......+. +.+..+++++.+.++++++|+ .|++++||++++ +|++|++|
T Consensus 106 ~~~~~~~~~~~~~--~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~-~g~~~~iE 174 (184)
T PF13535_consen 106 FAGISRYVRQSPG--HFSGG---VPTGYSVPS-----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDP-DGELYFIE 174 (184)
T ss_dssp EEEEEEEEEEETC--CCSSS---EEEEEEES-------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEET-CCEEEEEE
T ss_pred EEEEEEEeccccc--ccccc---eeeeeeccc-----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeC-CCCEEEEE
Confidence 3222211111000 00000 011112222 233448999999999999999 899999999996 59999999
Q ss_pred cCCCCCC
Q 004630 700 VNTVPGM 706 (741)
Q Consensus 700 INt~Pg~ 706 (741)
||+++|-
T Consensus 175 iN~R~~G 181 (184)
T PF13535_consen 175 INPRFGG 181 (184)
T ss_dssp EESS--S
T ss_pred ECccCCC
Confidence 9998873
No 71
>PRK05586 biotin carboxylase; Validated
Probab=99.83 E-value=1.3e-19 Score=205.03 Aligned_cols=227 Identities=18% Similarity=0.191 Sum_probs=159.1
Q ss_pred CccCCCCCCCeE--EEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh---CC-
Q 004630 1 MSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GI- 74 (741)
Q Consensus 1 l~~~GIp~p~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~---~~- 74 (741)
|+++|||||++. .+.+.+ ++.++++. ++||+||||..+++|+|+.++++.+|+.++....... .+
T Consensus 123 l~~~GIpvp~~~~~~~~~~~----e~~~~~~~-----igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~ 193 (447)
T PRK05586 123 MIKAGVPVVPGSEGEIENEE----EALEIAKE-----IGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFG 193 (447)
T ss_pred HHHCCCCCCCCcccccCCHH----HHHHHHHH-----cCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcC
Confidence 467999999984 344433 55555554 4569999999999999999999999976665543221 12
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
++.++||+||+|.+|+++.++.+..| ..+.+ ++.. +.+...+.. .....|+ .++++
T Consensus 194 ~~~vivEe~i~g~~ei~v~v~~d~~G---~~~~~--~~~~---------------~~~~~~~~~---~~~~~p~~~l~~~ 250 (447)
T PRK05586 194 DDSMYIEKFIENPKHIEFQILGDNYG---NVVHL--GERD---------------CSLQRRNQK---VLEEAPSPVMTEE 250 (447)
T ss_pred CCeEEEEecCCCCeEEEEEEEECCCC---CEEEE--ecee---------------cceEecccc---eEEEcCCCCCCHH
Confidence 46899999999768999999975433 22221 1111 111111110 1233453 58999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++++++|.+++++||+.|.+++||++ +++|++||+|||||+|.+. +.....+|+|
T Consensus 251 ~~~~l~~~a~~i~~aLg~~g~~~vEf~~-----------------~~~g~~~~iEvNpR~~~~~----~~t~~~tGid-- 307 (447)
T PRK05586 251 LRKKMGEIAVKAAKAVNYKNAGTIEFLL-----------------DKDGNFYFMEMNTRIQVEH----PITEMITGVD-- 307 (447)
T ss_pred HHHHHHHHHHHHHHHcCCcceeEEEEEE-----------------cCCCCEEEEEEECCCCCCc----cceehhhCCC--
Confidence 9999999999999999999999999997 5678999999999997552 2223457985
Q ss_pred HHHHHHHHHHHhhCCCC--CCCCCccccCCCCCCCCCCccccccccCceEEE
Q 004630 234 NILRTIIGHACSRFPNL--ASYNSVSSHLPGRSSGSKPTEALNKREGIREVF 283 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~ 283 (741)
+.+.+++.++...... +.....++.+..||.++++...|.|+.|+.+-.
T Consensus 308 -~~~~~i~~a~G~~l~~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G~~~~~ 358 (447)
T PRK05586 308 -LVKEQIKIAYGEKLSIKQEDIKINGHSIECRINAEDPKNGFMPCPGKIEEL 358 (447)
T ss_pred -HHHHHHHHHcCCCCCCcccccCcCceEEEEEeeccCcccCccCCCCEEEEE
Confidence 5566677776654332 122334678899999999988898998876543
No 72
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.83 E-value=1.1e-19 Score=205.91 Aligned_cols=234 Identities=18% Similarity=0.167 Sum_probs=160.1
Q ss_pred CccCCCCCCCeE--EEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh----CC
Q 004630 1 MSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GI 74 (741)
Q Consensus 1 l~~~GIp~p~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~----~~ 74 (741)
|+++|||+|++. .+.+.+ ++.++++.+ +||+||||..+++|+||.++++.+|+..++..+... ..
T Consensus 123 l~~~gip~pp~~~~~~~~~~----e~~~~~~~i-----g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~ 193 (449)
T TIGR00514 123 MKKAGVPCVPGSDGLVEDEE----ENVRIAKRI-----GYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFG 193 (449)
T ss_pred HHHCCCCCCCCcccCcCCHH----HHHHHHHHh-----CCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCC
Confidence 467999999985 333333 555556544 459999999999999999999999987666544321 13
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
...+|||+||+|++|+++.++.+.+|. .+.+ ++. .+.+..++.. .....|+ .++++
T Consensus 194 ~~~vlvEe~i~g~~e~~v~v~~d~~g~---~~~~--~~~---------------~~~~~~~~~~---~~~~~p~~~l~~~ 250 (449)
T TIGR00514 194 NDGVYIEKYIENPRHVEIQVLADKYGN---AIYL--GER---------------DCSIQRRHQK---LLEEAPSPALTPE 250 (449)
T ss_pred CCCEEEEECCCCCeEEEEEEEEcCCCC---EEEE--ecc---------------ccCceecccc---eEEECCCCCCCHH
Confidence 457999999997689999999764332 1211 111 0111111110 1122343 68999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.+++++||+.|++++||++ +++|++||+|||||++.+. +.....+|+|+
T Consensus 251 ~~~~i~~~a~~~~~~lg~~G~~~vef~~-----------------~~~g~~~viEiNpR~~~~~----~~~~~~tGvdl- 308 (449)
T TIGR00514 251 LRRKMGDAAVKAAVSIGYRGAGTVEFLL-----------------DKNGEFYFMEMNTRIQVEH----PVTEMITGVDL- 308 (449)
T ss_pred HHHHHHHHHHHHHHHCCCcceEEEEEEE-----------------eCCCCEEEEEEECCCCCCc----ceeehhcCCcH-
Confidence 9999999999999999999999999997 4678899999999997542 22235679864
Q ss_pred HHHHHHHHHHHhhCCCC--CCCCCccccCCCCCCCCCCccccccccCceEEEEEecCCc
Q 004630 234 NILRTIIGHACSRFPNL--ASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 290 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S 290 (741)
++.+++.++...... ......++.+..|+.++++.+.|.++.++..-...-+|..
T Consensus 309 --~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g~~~~~~~~~~~g 365 (449)
T TIGR00514 309 --IKEQIRIAAGEPLSLKQEDVVVRGHAIECRINAEDPIKTFLPSPGRITRYLPPGGPG 365 (449)
T ss_pred --HHHHHHHHCCCCCCCccccCCCceEEEEEEeeccCCCCCeeeCCCEEEEEEcCCCCC
Confidence 666666676553332 1222335788889999998888888888765444444443
No 73
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.82 E-value=4.8e-19 Score=179.57 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=142.9
Q ss_pred ChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHH
Q 004630 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKAL 543 (741)
Q Consensus 464 DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al 543 (741)
||..++++ +++.|+|++++......+ .+...++.+++ +||++|||+.+||++|+.+|++.++|..+.+..
T Consensus 1 Dk~~~~~~---~~~~gvp~~pg~~~~~~~------~eea~~~a~~i-GyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~ 70 (211)
T PF02786_consen 1 DKIRFRKL---AKKLGVPVPPGSTVPISS------VEEALEFAEEI-GYPVLIKASAGGGGRGMRIVHNEEELEEAFERA 70 (211)
T ss_dssp SHHHHHHH---HHHTT-BBSSBESSSBSS------HHHHHHHHHHH--SSEEEEETTSSTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHH---HHHCCCCcCCCCCCCCCC------HHHHHHHHHhc-CCceEEeecccccccccccccchhhhhhhhhhc
Confidence 89999998 999999999987652111 22345567788 699999999999999999999999998654332
Q ss_pred HHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecC
Q 004630 544 EECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM 623 (741)
Q Consensus 544 ~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~ 623 (741)
...... +.| +.+++||+|+++. +|+++.+++++...+..+
T Consensus 71 ~~~s~~--------~fg--------~~~v~iek~i~~~------------------------reiEvqvi~D~~gn~~~~ 110 (211)
T PF02786_consen 71 QRESPA--------AFG--------DGPVLIEKFIEGA------------------------REIEVQVIRDGKGNVVHL 110 (211)
T ss_dssp HHHHHH--------HHS--------TS-EEEEE--SSE------------------------EEEEEEEEEETTSEEEEE
T ss_pred cccCcc--------ccc--------cceEEEeeehhhh------------------------hhhhhhhhhccccceeee
Confidence 221110 001 5789999999984 799999999865544334
Q ss_pred ceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCC
Q 004630 624 PSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703 (741)
Q Consensus 624 ~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~ 703 (741)
+..+...+ . +.+.+....|++. |++++.++|++.+.+++++||+.|.++|+|.++.+++++||+|+||+
T Consensus 111 ~~~e~~~~--------~-hs~dsi~~~P~~~--L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 111 GERECSEQ--------R-HSQDSIEEAPAQT--LSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp EEEEEEEE--------E-TTEEEEEEES-SS--S-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred eeeccccc--------c-ccccceeEeeccc--cchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 44432211 1 3455666788764 89999999999999999999999999999999976799999999965
Q ss_pred CCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 004630 704 PGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 704 Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~~ 738 (741)
- +..+.+..++. .| +|+...+.+|+-
T Consensus 180 ~--~~~~p~~e~~t-----g~--dlv~~~~~ia~G 205 (211)
T PF02786_consen 180 L--QREHPVTEKVT-----GY--DLVRVQIRIALG 205 (211)
T ss_dssp ----TTHHHHHHHH-----T----HHHHHHHHHTT
T ss_pred C--CCcchHHHHHH-----CC--CHHHHHHHHHCC
Confidence 4 35555555554 33 677666666653
No 74
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.82 E-value=3.5e-19 Score=191.31 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=130.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|++..+.+.+ ++.++++++ .+||+||||..+++|+||+++++.+++......+. ..+..++|
T Consensus 107 l~~~gip~P~t~~~~~~~----~~~~~~~~~----~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~--~~~~~~lv 176 (300)
T PRK10446 107 LARQGIDLPVTGIAHSPD----DTSDLIDMV----GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFR--GLNAHILV 176 (300)
T ss_pred HHHcCCCCCCEEEeCCHH----HHHHHHHHh----CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHH--hcCCCEEE
Confidence 467999999998875443 455554433 24699999999999999999999988654443322 34578999
Q ss_pred eecc---CCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHH
Q 004630 81 ELFL---EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157 (741)
Q Consensus 81 Ee~i---~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~ 157 (741)
|||| .| +|++|.+++ ++ ++ ...++ .+ ..+ +|..++..+. ...|..++ ++
T Consensus 177 Qe~I~~~~g-~d~rv~vig----~~--~~--~~~~r--~~--------~~~--~~~~n~~~g~---~~~~~~l~----~~ 228 (300)
T PRK10446 177 QEYIKEAQG-CDIRCLVVG----DE--VV--AAIER--RA--------KEG--DFRSNLHRGG---AASVASIT----PQ 228 (300)
T ss_pred EeeeccCCC-ceEEEEEEC----CE--EE--EEEEE--ec--------CCC--chhheeccCC---eeccCCCC----HH
Confidence 9999 56 999999994 22 12 22222 11 111 4567776554 22344454 44
Q ss_pred HHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHH
Q 004630 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237 (741)
Q Consensus 158 i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~ 237 (741)
++++|.+++++||+. +++|||++ +++| +||+|||++|||+. +++++|+|+.+++.
T Consensus 229 ~~~~a~~a~~alg~~-~~gvD~~~-----------------~~~g-~~vlEvN~~pg~~~------~~~~~g~~~~~~~~ 283 (300)
T PRK10446 229 EREIAIKAARTMALD-VAGVDILR-----------------ANRG-PLVMEVNASPGLEG------IEKTTGIDIAGKMI 283 (300)
T ss_pred HHHHHHHHHHHhCCC-EEEEEEEE-----------------cCCC-cEEEEEECCCChhh------hHHHHCcCHHHHHH
Confidence 789999999999997 99999986 4567 89999999999863 46778999988777
Q ss_pred HHHHH-HHhhC
Q 004630 238 TIIGH-ACSRF 247 (741)
Q Consensus 238 ~ii~~-a~~r~ 247 (741)
.+|.. +..|+
T Consensus 284 ~~i~~~~~~~~ 294 (300)
T PRK10446 284 RWIERHATTEY 294 (300)
T ss_pred HHHHHhccccc
Confidence 66544 44444
No 75
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.82 E-value=1.7e-19 Score=220.26 Aligned_cols=234 Identities=19% Similarity=0.172 Sum_probs=168.0
Q ss_pred CccCCCCCCCeEE--EecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh---C-C
Q 004630 1 MSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-I 74 (741)
Q Consensus 1 l~~~GIp~p~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~---~-~ 74 (741)
|+++|||+||+.. +.+. +++.++++++ +||+||||..+|+|+|+.++++.+|+..++..+..+ . .
T Consensus 123 a~~~GVPvpp~t~~~v~~~----eea~~~ae~i-----GyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg 193 (1143)
T TIGR01235 123 AIKAGVPVVPGTDGPPETM----EEVLDFAAAI-----GYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFG 193 (1143)
T ss_pred HHHcCCCCCCCcccCcCCH----HHHHHHHHHc-----CCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence 4679999999863 3332 3566666554 559999999999999999999999976665544321 1 2
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
++.++||+||+|++|++|.++++..|. .+.+. +. .+.....+. ......|+ .++++
T Consensus 194 ~~~vlIEefI~g~reIeVqVlgD~~G~---vv~l~--eR---------------dcsvqrr~q---k~ie~aPa~~L~~e 250 (1143)
T TIGR01235 194 NDEVYVEKLIERPRHIEVQLLGDKHGN---VVHLF--ER---------------DCSVQRRHQ---KVVEVAPAPYLSRE 250 (1143)
T ss_pred CCcEEEEEcCCCCeEEEEEEEEeCCCC---EEEEE--ec---------------cccccccCc---eEEEEeCCCCCCHH
Confidence 468999999987799999999865432 22111 11 011111111 12234565 58999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.+++++||++|.++|||++ +.+|++||+|||||++.+. +.....+|++
T Consensus 251 ~r~~I~~~A~kla~aLgy~G~gtVEFlv-----------------d~dg~~yfIEVNPRiqveh----~vTe~vtGiD-- 307 (1143)
T TIGR01235 251 VRDEIAEYAVKLAKAVNYINAGTVEFLV-----------------DNDGKFYFIEVNPRIQVEH----TVTEEITGID-- 307 (1143)
T ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEE-----------------eCCCcEEEEEeecCCCcch----hHHHHHhCcH--
Confidence 9999999999999999999999999997 4678899999999998543 2223457985
Q ss_pred HHHHHHHHHHHhhCCC--------CCCCCCccccCCCCCCCCCCccccccccCceEEEEEecCCc
Q 004630 234 NILRTIIGHACSRFPN--------LASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 290 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S 290 (741)
++..+|..|...... .......+|++++||.+++|..+|.|+.|++...-.-||.+
T Consensus 308 -lv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f~p~~g~i~~~~~~~g~g 371 (1143)
T TIGR01235 308 -IVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNFQPDTGRIEAYRSAGGFG 371 (1143)
T ss_pred -HHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeeecCCCCcccCCcEeeEEecCCCCC
Confidence 455666666554322 11233458999999999999999999999998887777754
No 76
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.82 E-value=3.3e-19 Score=199.71 Aligned_cols=197 Identities=15% Similarity=0.178 Sum_probs=143.1
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhC----CCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----IDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~----~~~ 76 (741)
|+++|||||+|..+++.+ ++.++++.+ +||+||||..+++|+||.++++.+|+.+++.+++..+ .++
T Consensus 116 l~~~gIpt~~~~~~~~~~----ea~~~~~~~-----~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~ 186 (426)
T PRK13789 116 MKEAKIPTASYKTFTEYS----SSLSYLESE-----MLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGN 186 (426)
T ss_pred HHHcCCCCCCeEeeCCHH----HHHHHHHhc-----CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCC
Confidence 468999999999887655 666666544 4599999999999999999999999888877765321 134
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~~ 155 (741)
.+||||||+| +||||.++.++ . ...++++.+. .+..++++.++..++ +...+|++ +++++.
T Consensus 187 ~vlIEEfl~G-~E~Sv~~~~dg--~--~~~~lp~~~d------------~k~~~d~d~g~~tgg-mg~~~P~p~~~~~~~ 248 (426)
T PRK13789 187 QVVIEEFMEG-QEASIFAISDG--D--SYFLLPAAQD------------HKRAFDGDQGPNTGG-MGAYCPAPVITEAIL 248 (426)
T ss_pred eEEEEECcCC-eEEEEEEEECC--C--EEEEccceEe------------cccccCCCCCCCCCC-ceEEeeCCCCCHHHH
Confidence 8999999998 99999999742 1 2233444321 345678888887666 45677876 588888
Q ss_pred HHHHH-HHHHHHH---HhC--CCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcC
Q 004630 156 NSIRE-GASLLFQ---RLG--LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVG 229 (741)
Q Consensus 156 ~~i~~-~a~~~~~---aLg--~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G 229 (741)
+++++ ++.++++ ++| ++|+.++||++ +++|+|||+|+|+|||...++.+- ...+
T Consensus 249 ~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~i-----------------t~~g~~~vlE~n~R~Gdpe~~~ll---~~l~ 308 (426)
T PRK13789 249 QKVKERIFDPMFDDFRKKGHPYRGLLYAGLMI-----------------SPEGEPKVVEFNCRFGDPETQCVL---AMLD 308 (426)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEEEEEEE-----------------cCCCCEEEEEEecCCCCcHhhhhh---ccCC
Confidence 88864 5555554 445 67999999987 578889999999999975543331 1122
Q ss_pred CCHHHHHHHHHHHHHhhC
Q 004630 230 FSHSNILRTIIGHACSRF 247 (741)
Q Consensus 230 ~~~~~ll~~ii~~a~~r~ 247 (741)
.+|++.++..+.++.
T Consensus 309 ---~dl~~~~~~~~~g~l 323 (426)
T PRK13789 309 ---GDLLELLYAASTGKI 323 (426)
T ss_pred ---CCHHHHHHHHHcCCC
Confidence 366666676666543
No 77
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.82 E-value=3e-19 Score=196.14 Aligned_cols=183 Identities=19% Similarity=0.173 Sum_probs=133.3
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~-~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||+|+|..+.+.+ ++.++++++ +||+|+||..++ +|+|+.++++.+|+..+...+ .+..+|
T Consensus 106 l~~~gip~p~~~~~~~~~----~~~~~~~~~-----g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~l 172 (352)
T TIGR01161 106 LQKLGLPVPPFLVIKDEE----ELDAALQEL-----GFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL----GDRECI 172 (352)
T ss_pred HHHcCCCCCCccEeCCHH----HHHHHHHHc-----CCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc----CCCcEE
Confidence 467999999999988755 666666554 459999999986 799999999999976655543 235899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
|||||+|++|++|.++.+.+| ...++++.+... .. +.......|+.+++++.++++
T Consensus 173 vEe~I~~~~E~sv~~~~~~~G---~~~~~~~~~~~~----------~~-----------g~~~~~~~p~~~~~~~~~~~~ 228 (352)
T TIGR01161 173 VEEFVPFERELSVIVARSADG---ETAFYPVVENIH----------QD-----------GILRYVVAPAAVPDAIQARAE 228 (352)
T ss_pred EEecCCCCeEEEEEEEEcCCC---CEEEECCcccEE----------eC-----------CEEEEEECCCCCCHHHHHHHH
Confidence 999999559999999865333 223334332210 01 111234578889999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++|.+++++||+.|+.++||++ +++|++||+|||||||-+.. +.. ..++.|. +..+
T Consensus 229 ~~a~~i~~~l~~~G~~~ve~~~-----------------~~dg~~~v~EinpR~~~sg~--~~~--~~~~~s~---f~~~ 284 (352)
T TIGR01161 229 EIARRLMEELGYVGVLAVEMFV-----------------LPDGRLLINELAPRVHNSGH--YTL--DGCSTSQ---FEQH 284 (352)
T ss_pred HHHHHHHHHcCceeEEEEEEEE-----------------eCCCcEEEEEecCCCCCcCc--Cch--hhccccH---HHHH
Confidence 9999999999999999999987 56789999999999985432 221 3456543 3444
Q ss_pred HHHHH
Q 004630 240 IGHAC 244 (741)
Q Consensus 240 i~~a~ 244 (741)
++..+
T Consensus 285 ~ra~~ 289 (352)
T TIGR01161 285 LRAIL 289 (352)
T ss_pred HHHHc
Confidence 44443
No 78
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.82 E-value=4.2e-19 Score=196.48 Aligned_cols=249 Identities=19% Similarity=0.189 Sum_probs=186.4
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhC---C-CC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG---I-DD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~---~-~~ 76 (741)
|+++|||++|+..-.-. ..++..++++.+| |||||||..|++|+||.+|++.+|+.+++..+..+. + ++
T Consensus 123 ~~~aGVP~vpgs~~~~~--~~ee~~~~a~~iG-----yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~ 195 (449)
T COG0439 123 MAKAGVPVVPGSDGAVA--DNEEALAIAEEIG-----YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNP 195 (449)
T ss_pred HHHcCCCcCCCCCCCcC--CHHHHHHHHHHcC-----CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999999722111 1236666776555 599999999999999999999999877666554322 2 45
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~~ 155 (741)
.+++|+||.+.+.+.+.+++|+.+. .+-+ ++. -|....+++ ...+..|+. ++++.+
T Consensus 196 ~v~iEk~i~~~rhievqv~gD~~g~---~i~l--~eR---------------dcsiqrr~q---kvieeapsp~~~~e~r 252 (449)
T COG0439 196 RVYLEKFIEGPRHIEVQVLGDGHGN---VIHL--GER---------------DCSIQRRHQ---KVIEEAPSPLLTEELR 252 (449)
T ss_pred cEEeeeeccCCceEEEEEEEcCccc---EEEE--Eec---------------cCCCcCCcc---ceeeecCCCCCCHHHH
Confidence 6999999998779999999875542 1211 111 122222222 134556664 689999
Q ss_pred HHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHH
Q 004630 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 235 (741)
Q Consensus 156 ~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~l 235 (741)
+++...|.++.+++|++|.++++|++ +.+|++||+|+|||-+.... .....+|+ ++
T Consensus 253 ~~i~~~a~~a~~~~gY~gagtvEfl~-----------------~~~~~~yfiEmN~Rlqveh~----vte~vtGi---Dl 308 (449)
T COG0439 253 EKIGEAAVRAAKLIGYRGAGTVEFLY-----------------DSNGEFYFIEMNTRLQVEHP----VTEMVTGI---DL 308 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEE-----------------eCCCCEEEEEEecccccCcc----ceehhhhh---hH
Confidence 99999999999999999999999997 33688999999998876542 33345688 77
Q ss_pred HHHHHHHHHhhCCCCCC--CCCccccCCCCCCCCCCccccccccCceEEEEEecCCccceeeeeccHHHH
Q 004630 236 LRTIIGHACSRFPNLAS--YNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNV 303 (741)
Q Consensus 236 l~~ii~~a~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S~E~~vSl~sa~~v 303 (741)
+..+|+.|+.-...+++ ....++++..||.+++|..+|.|+.++.+=...=||.....+.++.++..|
T Consensus 309 v~~qi~ia~ge~l~~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~i~~~~~P~g~gvr~d~~~~~~~~i 378 (449)
T COG0439 309 VKEQIRIAAGEPLSLKQEDIKFRGHAIECRINAEDPLGNFLPSPGKITRYAPPGGPGVRVDSGVYDGYRV 378 (449)
T ss_pred HHHHHHHHcCCCCCCCCCcccccceeeeceeeccCCCCCcCCCCCeeeeecCCCCCceEEEeecccCccc
Confidence 88888888875544433 444479999999999999889999999988888899999888888777665
No 79
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.82 E-value=3.7e-19 Score=196.72 Aligned_cols=182 Identities=18% Similarity=0.138 Sum_probs=134.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~-~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||||+|..+.+.+ ++.++++++ +||+|+||+.+| +|+|+.++++.+|+..+...+ ....+|
T Consensus 108 l~~~Gip~p~~~~v~s~~----~l~~~~~~~-----g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~----~~~~~i 174 (372)
T PRK06019 108 LDKLGIPVAPFAVVDSAE----DLEAALADL-----GLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL----GSVPCI 174 (372)
T ss_pred HHHCCCCCCCceEeCCHH----HHHHHHHHc-----CCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc----CCCCEE
Confidence 467999999999998765 666666554 459999999875 699999999999976655543 246899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
||+||++++|++|.++.+.+| ...++++.+... ..+++ .....|+.+++++.++++
T Consensus 175 vEe~I~~~~E~sv~~~~~~~G---~~~~~p~~e~~~----------~~gi~-----------~~~~~pa~~~~~~~~~~~ 230 (372)
T PRK06019 175 LEEFVPFEREVSVIVARGRDG---EVVFYPLVENVH----------RNGIL-----------RTSIAPARISAELQAQAE 230 (372)
T ss_pred EEecCCCCeEEEEEEEECCCC---CEEEeCCcccEE----------eCCEE-----------EEEECCCCCCHHHHHHHH
Confidence 999999559999999875433 234444443211 11122 224578889999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++|.+++++||+.|+.++||++ +++|++||+|+||||+-+.. +.. ..+|+|. .+..
T Consensus 231 ~~a~~i~~~L~~~G~~~vEff~-----------------~~dg~~~v~EinpR~~~sg~--~t~--~~~~~sq---f~~~ 286 (372)
T PRK06019 231 EIASRIAEELDYVGVLAVEFFV-----------------TGDGELLVNEIAPRPHNSGH--WTI--EACSTSQ---FEQH 286 (372)
T ss_pred HHHHHHHHHcCccceeEEEEEE-----------------cCCCeEEEEEecCCccCccc--EEh--hhcCccH---HHHH
Confidence 9999999999999999999997 56789999999999985432 222 4567764 3444
Q ss_pred HHHH
Q 004630 240 IGHA 243 (741)
Q Consensus 240 i~~a 243 (741)
++..
T Consensus 287 ira~ 290 (372)
T PRK06019 287 LRAI 290 (372)
T ss_pred HHHH
Confidence 4444
No 80
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.82 E-value=3.5e-19 Score=205.80 Aligned_cols=187 Identities=14% Similarity=0.068 Sum_probs=140.6
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~-~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||||+|..+.+.+ ++.++++.+ +||+||||+.+| +|+|+.++++.+|+..++..+. .++..+|
T Consensus 129 l~~~GIptp~~~~v~~~~----el~~~~~~i-----g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~--~~~~~vl 197 (577)
T PLN02948 129 FSKHGIPLPEFMEIDDLE----SAEKAGDLF-----GYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALG--GFERGLY 197 (577)
T ss_pred HHHCCcCCCCeEEeCCHH----HHHHHHHhc-----CCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhh--CCCCcEE
Confidence 467999999999987654 565555544 559999999888 5999999999999876666553 3567899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
||+||+|.+|++|.++++.+| ...+++..|... .+.++ ....+|+.+++++.++++
T Consensus 198 vEefI~~~~EisV~v~r~~~G---~i~~~p~~E~~~----------~~~~~-----------~~~~~Pa~l~~~~~~~~~ 253 (577)
T PLN02948 198 AEKWAPFVKELAVMVARSRDG---STRCYPVVETIH----------KDNIC-----------HVVEAPANVPWKVAKLAT 253 (577)
T ss_pred EEecCCCCeEEEEEEEECCCC---CEEEecCcccEE----------ECCee-----------EEEEECCCCCHHHHHHHH
Confidence 999999769999999975433 222333322210 11111 224579999999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++|.+++++|+++|+++||||+ +++|++||+|||||||.++.... ..+++ ++.+.+
T Consensus 254 ~~A~~~~~aLg~~Gv~~vEffv-----------------~~dG~v~v~EInpRpg~sGh~t~----ea~~~---s~fe~~ 309 (577)
T PLN02948 254 DVAEKAVGSLEGAGVFGVELFL-----------------LKDGQILLNEVAPRPHNSGHYTI----EACYT---SQFEQH 309 (577)
T ss_pred HHHHHHHHHhCCCeEEEEEEEE-----------------cCCCcEEEEEEeCCCCCCCceee----ecccC---CHHHHH
Confidence 9999999999999999999998 57889999999999997554221 45666 447777
Q ss_pred HHHHHhh
Q 004630 240 IGHACSR 246 (741)
Q Consensus 240 i~~a~~r 246 (741)
|+.++..
T Consensus 310 vRa~lGl 316 (577)
T PLN02948 310 LRAVLGL 316 (577)
T ss_pred HHHHcCC
Confidence 7777665
No 81
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=99.81 E-value=9.2e-19 Score=187.82 Aligned_cols=237 Identities=19% Similarity=0.281 Sum_probs=176.5
Q ss_pred ccCCCCC---CchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHH
Q 004630 429 AVHGGIG---EDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL 505 (741)
Q Consensus 429 ~lhG~~G---Edg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~ 505 (741)
++|-+|| |+....++|+..||-++|++..+..-.-||...|++ ++++|+|+.|.+--...+ .+.+.+.
T Consensus 73 aihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~i---m~~AgVp~vpG~~g~~qs------~e~~~~~ 143 (670)
T KOG0238|consen 73 AIHPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQI---MKAAGVPLVPGYHGEDQS------DEEAKKV 143 (670)
T ss_pred eecCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHH---HHhcCCccccCccccccc------HHHHHHH
Confidence 3565555 899999999999999999999999999999999999 999999987764332211 3445667
Q ss_pred HhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhh
Q 004630 506 TSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585 (741)
Q Consensus 506 ~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v 585 (741)
..++ +||++||+..+|+++|+.++.+.+|+.+ .++.+... .+.+| | ++.+++|+||+..
T Consensus 144 a~eI-gyPvMiKa~~GGGGkGMria~~~~ef~~---~~~~ak~E-a~~sF----G--------dd~~llEkfi~np---- 202 (670)
T KOG0238|consen 144 AREI-GYPVMIKATAGGGGKGMRIAWSEEEFEE---GLESAKQE-AAKSF----G--------DDGMLLEKFIDNP---- 202 (670)
T ss_pred HHhc-CCcEEEEeccCCCCcceEeecChHHHHH---HHHHHHHH-HHhhc----C--------cchhhHHHhccCC----
Confidence 7889 6999999999999999999999999875 33322211 01111 2 7889999999987
Q ss_pred cccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHH
Q 004630 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665 (741)
Q Consensus 586 ~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i 665 (741)
|.+++.|++++......+.+.... +..-..| ...-.|+|. ++++...++
T Consensus 203 --------------------RHiEvQv~gD~hGnav~l~ERdCS----vQRRnQK-----iiEEaPap~--l~~e~R~~l 251 (670)
T KOG0238|consen 203 --------------------RHIEVQVFGDKHGNAVHLGERDCS----VQRRNQK-----IIEEAPAPN--LPEETRRAL 251 (670)
T ss_pred --------------------ceEEEEEEecCCCcEEEecccccc----hhhhhhh-----hhhcCCCCC--CCHHHHHHH
Confidence 799999999874443333322111 1111112 122356654 899999999
Q ss_pred HHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC-CCchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004630 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737 (741)
Q Consensus 666 ~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t-~~S~l~~~a~~a~~~~~p~~l~~~li~~a~ 737 (741)
.+.|.++++++|..|...|+|++|+ .+++||+|+||+--.. |.+ +| .+..||+++.|+.|.
T Consensus 252 geaAv~aa~avgY~~aGTVEFi~D~-~~~FyFmEmNTRLQVEHPvT---Em-------Itg~DLVewqiRvA~ 313 (670)
T KOG0238|consen 252 GEAAVRAAKAVGYVGAGTVEFIVDS-KDNFYFMEMNTRLQVEHPVT---EM-------ITGTDLVEWQIRVAA 313 (670)
T ss_pred HHHHHHHHHhhCCcccceEEEEEcC-CCcEEEEEeeceeeecccch---hh-------ccchHHHHHHHHHhc
Confidence 9999999999999999999999997 6899999999965432 222 11 234689999998875
No 82
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.81 E-value=1.1e-18 Score=195.79 Aligned_cols=195 Identities=12% Similarity=0.100 Sum_probs=139.4
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh----CCCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~----~~~~ 76 (741)
|+++|||||+|..+.+.+ ++.++++++ +||+||||..+++|+||.++++.+|+.+++.+++.. ..+.
T Consensus 110 l~~~GIptp~~~~~~~~~----e~~~~~~~~-----g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~ 180 (434)
T PLN02257 110 CDKYKIPTAKYETFTDPA----AAKKYIKEQ-----GAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGS 180 (434)
T ss_pred HHHcCCCCCCeEEeCCHH----HHHHHHHHc-----CCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCC
Confidence 568999999999887654 566666544 459999999999999999999999987777665421 2346
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~ 155 (741)
.+||||||.| +|+||.++.++ .. +++..+.. . .+++++++.++..+++. ...|+ .+++++.
T Consensus 181 ~vlIEefi~G-~E~Sv~~~~dG--~~----~~pl~~~~--d--------hkr~~d~d~g~ntggmg-~~sp~p~l~~~~~ 242 (434)
T PLN02257 181 EVVVEEFLDG-EEASFFALVDG--EN----AIPLESAQ--D--------HKRVGDGDTGPNTGGMG-AYSPAPVLTPELE 242 (434)
T ss_pred eEEEEECCCC-CEEEEEEEECC--Cc----EEEEEeee--e--------cccccCCCCCCCCCCCe-eEecCCCCCHHHH
Confidence 8999999998 99999888642 22 22222221 1 45789999999777644 44444 4888888
Q ss_pred HHH-HHHHH---HHHHHhCCC--CeeEeeeeecCCCCccccccccccCcC-CCCcEEEEeecCCCCCCCCC-hHHHHHHH
Q 004630 156 NSI-REGAS---LLFQRLGLC--DFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLISGMEQTS-FLFQQASK 227 (741)
Q Consensus 156 ~~i-~~~a~---~~~~aLg~~--g~~~iD~~~~~~~~~~~~~~~~~~r~~-~~G~~~vlEiN~~Pgl~~~s-~~~~~~~~ 227 (741)
+++ ++++. +++++.|+. |+.++||++ + ++|.|||+|+|+|||+..+. .++.
T Consensus 243 ~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml-----------------~~~~g~p~vLE~N~R~Gdpe~~~~l~~---- 301 (434)
T PLN02257 243 SKVMETIIYPTVKGMAAEGCKFVGVLYAGLMI-----------------EKKSGLPKLLEYNVRFGDPECQVLMMR---- 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEE-----------------EcCCCCEEEEEEECCCCCCchheEehh----
Confidence 875 44444 455677765 777999887 4 56789999999999986543 2222
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 004630 228 VGFSHSNILRTIIGHACSR 246 (741)
Q Consensus 228 ~G~~~~~ll~~ii~~a~~r 246 (741)
.+. +|+..++..+.++
T Consensus 302 l~~---Dl~~~~~~~~~g~ 317 (434)
T PLN02257 302 LES---DLAQVLLAACKGE 317 (434)
T ss_pred hcC---CHHHHHHHHHcCC
Confidence 354 6666677777555
No 83
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.81 E-value=1.2e-18 Score=190.16 Aligned_cols=237 Identities=20% Similarity=0.287 Sum_probs=175.9
Q ss_pred ccCCCCC---CchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHH
Q 004630 429 AVHGGIG---EDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHEL 505 (741)
Q Consensus 429 ~lhG~~G---Edg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~ 505 (741)
++|-+|| |+....+.++..|+-|+||++.+....-||...|.+ +.++|+|+.|.+.=...+ .+.+..+
T Consensus 77 AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l---~~~AgVp~VPG~~g~~qd------~~~~~~~ 147 (645)
T COG4770 77 AIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKL---AAEAGVPTVPGYHGPIQD------AAELVAI 147 (645)
T ss_pred cccCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHH---HHHcCCCccCCCCCcccC------HHHHHHH
Confidence 4576666 999999999999999999999999999999999998 999999988765432221 2345667
Q ss_pred HhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhh
Q 004630 506 TSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585 (741)
Q Consensus 506 ~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v 585 (741)
.+++ +||+.||++.+||++|+.++.+.+++.+ +++.+... .+.+| | ++.++||+|++-.
T Consensus 148 A~ei-GyPVlIKAsaGGGGKGMRvv~~~~e~~e---~l~sarrE-A~asF----G--------ddrv~iEkyl~~P---- 206 (645)
T COG4770 148 AEEI-GYPVLIKASAGGGGKGMRVVETPEEFAE---ALESARRE-AKASF----G--------DDRVFIEKYLDKP---- 206 (645)
T ss_pred HHhc-CCcEEEEeccCCCCCceEeecCHHHHHH---HHHHHHHH-HHhhc----C--------CceEehhhhcCCC----
Confidence 7889 6999999999999999999999999885 33333221 11122 2 7899999999877
Q ss_pred cccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHH
Q 004630 586 SSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKC 665 (741)
Q Consensus 586 ~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i 665 (741)
|.|++.|++++..++..+++....-+ .-..| ...-.|+|. |++++.++|
T Consensus 207 --------------------RHIEiQV~aD~HGNvv~LgERdCSlQ----RRhQK-----VIEEAPaP~--l~~~~R~am 255 (645)
T COG4770 207 --------------------RHIEIQVFADQHGNVVHLGERDCSLQ----RRHQK-----VIEEAPAPF--LTEETREAM 255 (645)
T ss_pred --------------------ceEEEEEEecCCCCEEEeeccccchh----hhcch-----hhhcCCCCC--CCHHHHHHH
Confidence 79999999987555444443322111 11112 122346664 899999999
Q ss_pred HHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCC-CCchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004630 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMT-PSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737 (741)
Q Consensus 666 ~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t-~~S~l~~~a~~a~~~~~p~~l~~~li~~a~ 737 (741)
-+.|.+++++.|+.|...|+|+++. ++.+||+|+||+=-.. |-+ ++ .-..||+++.|+.|-
T Consensus 256 g~aAv~~a~avgY~gAGTVEFivd~-~~~f~FlEMNTRLQVEHPVT---E~-------iTGiDLVewqiRVA~ 317 (645)
T COG4770 256 GEAAVAAAKAVGYVGAGTVEFIVDA-DGNFYFLEMNTRLQVEHPVT---EL-------ITGIDLVEWQIRVAS 317 (645)
T ss_pred HHHHHHHHHhcCCCcCceEEEEEcC-CCcEEEEEeecceeccccch---hh-------hhhhHHHHHHHHHhc
Confidence 9999999999999999999999996 6889999999964332 111 00 122477777777653
No 84
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.80 E-value=1.3e-18 Score=193.05 Aligned_cols=186 Identities=17% Similarity=0.145 Sum_probs=133.7
Q ss_pred ccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh--CCCCeEE
Q 004630 2 SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE--GIDDRVV 79 (741)
Q Consensus 2 ~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~--~~~~~vl 79 (741)
+++|||+|+|..+.+.+ ++.++++++ +||+|+||..+++|+||.++++.+|+..++..+... ...+.+|
T Consensus 110 ~~~gip~p~~~~~~~~~----~~~~~~~~~-----g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~i 180 (380)
T TIGR01142 110 EELGLPTSRYMFADSLD----ELREAVEKI-----GYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVI 180 (380)
T ss_pred HHCCCCCCCceEeCCHH----HHHHHHHHc-----CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEE
Confidence 57899999999988755 666665544 459999999999999999999999987766655321 1246899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
|||||+|+.|++|.++.+.+|. ....++.+. +.....+ ..+..|+.+++++.++++
T Consensus 181 vEe~i~~~~E~sv~~~~~~~g~---~~~~~~~~~----------------~~~~~~~-----~~~~~p~~l~~~~~~~i~ 236 (380)
T TIGR01142 181 VEEFIDFDYEITLLTVRHVDGN---TTFCAPIGH----------------RQIDGDY-----HESWQPQEMSEKALEEAQ 236 (380)
T ss_pred EEEecCCCEEEEEEEEEcCCCC---EEEecCcce----------------EEeCCee-----EEEECCCCCCHHHHHHHH
Confidence 9999996689999988643322 122122111 1111111 235678899999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++|++++++||+.|++++||++ ++ +.+||+|||||||.+.... +. ..|+|+.+ .+
T Consensus 237 ~~a~~~~~~l~~~G~~~ie~~~-----------------~~-~~~~viEinpR~~~~~~~~---~~-~~g~~~~~---~~ 291 (380)
T TIGR01142 237 RIAKRITDALGGYGLFGVELFV-----------------KG-DEVIFSEVSPRPHDTGMVT---LI-SQGLSEFA---LH 291 (380)
T ss_pred HHHHHHHHHcCCcceEEEEEEE-----------------EC-CcEEEEEeecCCCCCceEE---ee-ecCCCHHH---HH
Confidence 9999999999999999999997 33 4699999999999554221 11 23887644 44
Q ss_pred HHHHHh
Q 004630 240 IGHACS 245 (741)
Q Consensus 240 i~~a~~ 245 (741)
++.++.
T Consensus 292 ~r~~~G 297 (380)
T TIGR01142 292 VRAILG 297 (380)
T ss_pred HHHHcC
Confidence 555544
No 85
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.80 E-value=1.1e-18 Score=198.12 Aligned_cols=225 Identities=19% Similarity=0.170 Sum_probs=155.0
Q ss_pred CccCCCCCCCeE--EEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh----CC
Q 004630 1 MSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GI 74 (741)
Q Consensus 1 l~~~GIp~p~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~----~~ 74 (741)
|+++|||+||+. .+.+.+ ++.++++.+ +||+||||..+++|+||.+++|.+|+.+++..+... ..
T Consensus 123 l~~~gIp~pp~~~~~v~~~~----~~~~~~~~~-----g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~ 193 (451)
T PRK08591 123 MKKAGVPVVPGSDGPVDDEE----EALAIAKEI-----GYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFG 193 (451)
T ss_pred HHHcCCCCCCCcccccCCHH----HHHHHHHHc-----CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcC
Confidence 467999999984 444433 566666544 459999999999999999999999987766654321 12
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
++.++|||||+|++|+++.++.++.|. .+.+ ++.. +.+...+.. .....|+ .++++
T Consensus 194 ~~~vlvEe~i~g~~e~~v~v~~d~~g~---~~~~--~~~~---------------~~~~~~~~~---~~~~~p~~~l~~~ 250 (451)
T PRK08591 194 NPGVYMEKYLENPRHIEIQVLADGHGN---AIHL--GERD---------------CSLQRRHQK---VLEEAPSPAITEE 250 (451)
T ss_pred CCCEEEEeCCCCCcEEEEEEEEcCCCC---EEEE--eccc---------------ccceeccee---EEEECCCCCCCHH
Confidence 457999999997689999999764332 1211 1110 111111100 1122344 58999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.+++++||+.|++++||++ +.+|++||+|||||++.+. +.....+|+|+
T Consensus 251 ~~~~l~~~a~~~~~~lg~~G~~~vEf~~-----------------~~~g~~~viEINpR~~~~~----~~~~~~~Gvdl- 308 (451)
T PRK08591 251 LRRKIGEAAVKAAKAIGYRGAGTIEFLY-----------------EKNGEFYFIEMNTRIQVEH----PVTEMITGVDL- 308 (451)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEEE-----------------cCCCCEEEEEEECCCCccc----hhhhhhhCCCH-
Confidence 9999999999999999999999999987 4578899999999997442 23335679854
Q ss_pred HHHHHHHHHHHhhCCCC--CCCCCccccCCCCCCCCCCccccccccCceE
Q 004630 234 NILRTIIGHACSRFPNL--ASYNSVSSHLPGRSSGSKPTEALNKREGIRE 281 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 281 (741)
+..+++.+++..... +.....++.+..|+.++++...+.++.++.+
T Consensus 309 --~~~~i~~a~G~~l~~~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~~~ 356 (451)
T PRK08591 309 --VKEQIRIAAGEPLSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKIT 356 (451)
T ss_pred --HHHHHHHHCCCCCCCcccccCcCceEEEEEEeeecCccCcccCCCEee
Confidence 556666776653322 1222335777888888888778778777643
No 86
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.79 E-value=3.8e-18 Score=182.53 Aligned_cols=226 Identities=18% Similarity=0.155 Sum_probs=163.8
Q ss_pred ccCccEEEEccCCCCCCchHHHHHHHHcCCCccC-CCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCch
Q 004630 420 KENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTG-PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPI 498 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG-~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~ 498 (741)
+..+|+++|..|... -..-+..++..|+..+- ++..+..++.||..+.+. ++++|||+|+++.++..+
T Consensus 64 ~~~Idv~~P~~~~~~--l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~---~~~~~ipvp~~~~v~t~~------ 132 (329)
T PF15632_consen 64 EHGIDVFVPGRNREL--LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEF---MEANGIPVPPYWRVRTAD------ 132 (329)
T ss_pred HhCCeEEEcCccHHH--HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHH---HHhCCCCCCCEEEeCCHH------
Confidence 357899999988654 34557889999999988 889999999999999998 999999999999997643
Q ss_pred hhHHHHHHhhcCCCc---EEEecCCCCCCcceEEeC-CccchHHHHH---------HHHHHHhcCCCCCcccccccccCC
Q 004630 499 VDIWHELTSKLQCKT---LCVKPARDGCSTGVARLC-CAEDLTVYVK---------ALEECLLRIPPNSFSRAHGMIEMP 565 (741)
Q Consensus 499 ~~~~~~~~~~lg~~P---vvVKP~~~gsS~GV~~v~-~~~eL~~~~~---------al~~a~~~~~~~~l~~~~~~~~~p 565 (741)
.++...+++ ++| ++|||+.+-+|.|.++++ +.+++..+.. .+..+++. +
T Consensus 133 --el~~a~~~l-~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~--------~------- 194 (329)
T PF15632_consen 133 --ELKAAYEEL-RFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQR--------S------- 194 (329)
T ss_pred --HHHHHHHhc-CCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhc--------c-------
Confidence 334445566 455 999999999999999998 5555543222 11111110 0
Q ss_pred CCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCC
Q 004630 566 NPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT 645 (741)
Q Consensus 566 ~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~ 645 (741)
...+++||.||++|. |+||.|+...|...+.+|..+. |.
T Consensus 195 -~~~~~llvMeyL~G~-------------------------EySVD~l~~~G~viaaV~R~K~---------------G~ 233 (329)
T PF15632_consen 195 -EEFPPLLVMEYLPGP-------------------------EYSVDCLADEGRVIAAVPRRKL---------------GR 233 (329)
T ss_pred -CCCCCcEEecCCCCC-------------------------eEEEEEEecCCEEEEEEEEEec---------------Cc
Confidence 114789999999997 9999999998887665554322 11
Q ss_pred ceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCH
Q 004630 646 GINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYP 725 (741)
Q Consensus 646 ~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p 725 (741)
...+. ..+.+.++|+++++++|+.|..+|+|+.|. +|+++++||||+|.-+= .+++.+ |--+|
T Consensus 234 ~q~l~----------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g~p~LLEINpR~sGGi-----~~s~~a-GvNlp 296 (329)
T PF15632_consen 234 RQVLE----------NDEELIELARRLAEAFGLDGLFNIQFRYDE-DGNPKLLEINPRPSGGI-----GYSCAA-GVNLP 296 (329)
T ss_pred eeEEE----------ECHHHHHHHHHHHHHhCCCceEEEEEEEcC-CCCEEEEEeCCCCccch-----hhHhhc-CCChH
Confidence 12222 124667899999999999999999999985 79999999999764322 122333 33567
Q ss_pred HHHHHHH
Q 004630 726 HQFFRKV 732 (741)
Q Consensus 726 ~~l~~~l 732 (741)
...+..+
T Consensus 297 ~la~~~~ 303 (329)
T PF15632_consen 297 YLAVKLA 303 (329)
T ss_pred HHHHHHH
Confidence 6555443
No 87
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.79 E-value=1.7e-18 Score=212.66 Aligned_cols=234 Identities=17% Similarity=0.159 Sum_probs=165.7
Q ss_pred CccCCCCCCCeEE--EecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh---CC-
Q 004630 1 MSKQGFITVPSFL--LQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GI- 74 (741)
Q Consensus 1 l~~~GIp~p~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~---~~- 74 (741)
|+++|||+||++. +.+.+ ++.++++++ +||+||||..+++|+||.++++.+|+..++..+... .+
T Consensus 127 l~~~GVPv~P~~~~~v~s~e----ea~~~a~~i-----GyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg 197 (1146)
T PRK12999 127 AIKAGVPVIPGSEGPIDDIE----EALEFAEEI-----GYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFG 197 (1146)
T ss_pred HHHCCCCCCCCcccCCCCHH----HHHHHHHHh-----CCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcC
Confidence 4679999998764 44433 666666654 459999999999999999999999976665543321 11
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
++.++||+||+|.+|++|.++.++.|. .+.+ .+. .++...++. ......|+ .++++
T Consensus 198 ~~~vlVEefI~g~~~ieVqvl~D~~G~---vv~l--~er---------------dcsvqrr~q---k~ie~aP~~~L~~~ 254 (1146)
T PRK12999 198 NDEVYLEKYVENPRHIEVQILGDKHGN---VVHL--YER---------------DCSVQRRHQ---KVVEIAPAPGLSEE 254 (1146)
T ss_pred CCcEEEecCCCCCeEEEEEEEEECCCC---EEEE--Ecc---------------ccceeecCc---cEEEEcCCCCCCHH
Confidence 468999999997789999999865432 2211 110 011111111 01223454 68999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.++++++|++|.+++||++ +++|++||+|||||++... +.....+|+|
T Consensus 255 ~~~~l~~~A~kl~~algy~G~gtVEflv-----------------d~dg~~yfIEINpRlqveh----~vte~~tGvD-- 311 (1146)
T PRK12999 255 LRERICEAAVKLARAVGYVNAGTVEFLV-----------------DADGNFYFIEVNPRIQVEH----TVTEEVTGID-- 311 (1146)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEEE-----------------ECCCCEEEEEEECCCCCcc----hHHHHHhCcC--
Confidence 9999999999999999999999999997 4567899999999997532 2233457985
Q ss_pred HHHHHHHHHHHhhCCCC--------CCCCCccccCCCCCCCCCCccccccccCceEEEEEecCCc
Q 004630 234 NILRTIIGHACSRFPNL--------ASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDT 290 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S 290 (741)
++..+|+.|+...... ......++++++|+.+++|...|.|..|+..-.-.-||.+
T Consensus 312 -lv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P~~G~i~~~~~p~~~~ 375 (1146)
T PRK12999 312 -IVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMPDTGRITAYRSPGGFG 375 (1146)
T ss_pred -HHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeecCccCccCCCcEEEEEEcCCCCc
Confidence 5666677776654221 1223347899999999999999999999887665555544
No 88
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.78 E-value=3.7e-18 Score=188.98 Aligned_cols=196 Identities=17% Similarity=0.138 Sum_probs=137.0
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||||+|..+.+.+ ++.++++++ +||+||||..+++|+||.+++|.+|+.+++..++.......+||
T Consensus 75 l~~~gIptp~~~~~~~~~----ea~~~~~~~-----g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlv 145 (379)
T PRK13790 75 MEKYNIPTADYKEVERKK----DALTYIENC-----ELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVF 145 (379)
T ss_pred HHHCCCCCCCEEEECCHH----HHHHHHHhc-----CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEE
Confidence 578999999998887654 565565544 56999999999999999999999998888777663344568999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHHHHH-
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINSI- 158 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~~~i- 158 (741)
||||+| +|+||.++.++. . .+.+.. +. + +.+.+++++.+++.++ +...+|. .+++++.+++
T Consensus 146 Ee~i~G-~E~sv~~~~~g~--~--~~~~~~--~~-~--------~~kr~~~~d~g~~tgg-~~~~~p~~~l~~~~~~~~~ 208 (379)
T PRK13790 146 ETFLEG-EEFSLMTFVNGD--L--AVPFDC--IA-Q--------DHKRAFDHDEGPNTGG-MGAYCPVPHISDDVLKLTN 208 (379)
T ss_pred EEcccC-ceEEEEEEeeCC--E--EEeccc--cc-c--------cccccccCCCCCcCCC-CceEeeCCCCCHHHHHHHH
Confidence 999998 999999997422 1 111111 10 0 0234667777776655 4455665 5788777666
Q ss_pred HHHHHHHHHHhCC-----CCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 159 REGASLLFQRLGL-----CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 159 ~~~a~~~~~aLg~-----~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
++++.+++++|++ .|+.++||++ +++| +||+|+|+|||-..+.. +....|.
T Consensus 209 ~~i~~~~~~aL~~~g~~~~Gvl~~e~~l-----------------t~~g-~~viEiN~R~G~pe~~~---~~~~~~~--- 264 (379)
T PRK13790 209 ETIAQPIAKAMLNEGYQFFGVLYIGAIL-----------------TKDG-PKVIEFNARFGDPEAQV---LLSRMES--- 264 (379)
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEEEEE-----------------eCCC-eEEEEEEcccCCCccee---eecccCC---
Confidence 7888888888844 4667789887 4566 99999999998533322 1222455
Q ss_pred HHHHHHHHHHHhh
Q 004630 234 NILRTIIGHACSR 246 (741)
Q Consensus 234 ~ll~~ii~~a~~r 246 (741)
+++..++..+...
T Consensus 265 Dl~~~~~~~~~g~ 277 (379)
T PRK13790 265 DLMQHIIDLDEGK 277 (379)
T ss_pred CHHHHHHHHHcCC
Confidence 5566666666553
No 89
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.78 E-value=2.5e-18 Score=174.31 Aligned_cols=191 Identities=19% Similarity=0.200 Sum_probs=131.4
Q ss_pred CccCCCCCCCeEEE--ecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhC----C
Q 004630 1 MSKQGFITVPSFLL--QGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG----I 74 (741)
Q Consensus 1 l~~~GIp~p~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~----~ 74 (741)
|+++|+|+||+... .+. +++.++++++|| |++|||..+++++|+.++++.+++...+....... .
T Consensus 9 ~~~~gvp~~pg~~~~~~~~----eea~~~a~~iGy-----PVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg 79 (211)
T PF02786_consen 9 AKKLGVPVPPGSTVPISSV----EEALEFAEEIGY-----PVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFG 79 (211)
T ss_dssp HHHTT-BBSSBESSSBSSH----HHHHHHHHHH-S-----SEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCcCCCCCCCCCCH----HHHHHHHHhcCC-----ceEEeecccccccccccccchhhhhhhhhhccccCccccc
Confidence 46799999999876 433 377778876665 99999999999999999999999877766554333 2
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
+.+++||+|+.|.+|+.|.+++|+.|+ .+. .++++ + .-.. +.+. .....|+ .++++
T Consensus 80 ~~~v~iek~i~~~reiEvqvi~D~~gn---~~~--~~~~e--~-------------~~~~--hs~d-si~~~P~~~L~~~ 136 (211)
T PF02786_consen 80 DGPVLIEKFIEGAREIEVQVIRDGKGN---VVH--LGERE--C-------------SEQR--HSQD-SIEEAPAQTLSDE 136 (211)
T ss_dssp TS-EEEEE--SSEEEEEEEEEEETTSE---EEE--EEEEE--E-------------EEEE--TTEE-EEEEES-SSS-HH
T ss_pred cceEEEeeehhhhhhhhhhhhhccccc---eee--eeeec--c-------------cccc--cccc-ceeEeeccccchH
Confidence 679999999998789999999976543 122 23332 1 0011 2121 2233454 69999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.++|++.|.+++++||+.|.++|+|.++ ..+|++||+|+|||..-+ .|...+.+|++
T Consensus 137 ~~~~l~~~a~~ia~~l~~~G~~tvef~~~----------------~~~~~~y~lEvNpR~~~~----~p~~e~~tg~d-- 194 (211)
T PF02786_consen 137 ERQKLREAAKKIARALGYVGAGTVEFAVD----------------PDDGEFYFLEVNPRLQRE----HPVTEKVTGYD-- 194 (211)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEEEEE----------------TTTTEEEEEEEESS--TT----HHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHhhCeeecceEEEEEc----------------cCccceeeecccCCCCCc----chHHHHHHCCC--
Confidence 99999999999999999999999999983 137899999999976633 36677788995
Q ss_pred HHHHHHHHHHHhh
Q 004630 234 NILRTIIGHACSR 246 (741)
Q Consensus 234 ~ll~~ii~~a~~r 246 (741)
|+...++.|+..
T Consensus 195 -lv~~~~~ia~G~ 206 (211)
T PF02786_consen 195 -LVRVQIRIALGE 206 (211)
T ss_dssp -HHHHHHHHHTT-
T ss_pred -HHHHHHHHHCCC
Confidence 555555555544
No 90
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.78 E-value=3.5e-18 Score=186.54 Aligned_cols=234 Identities=16% Similarity=0.138 Sum_probs=173.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhH----hhCCCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGII----LEGIDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~----~~~~~~ 76 (741)
|.++|+|+.|.+.-...+ .+++..++++ ++||+.||+..||+++|+.++.+.+|+.+.....- ..-.++
T Consensus 123 ~~~AgVp~VPG~~g~~qd--~~~~~~~A~e-----iGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGdd 195 (645)
T COG4770 123 AAEAGVPTVPGYHGPIQD--AAELVAIAEE-----IGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDD 195 (645)
T ss_pred HHHcCCCccCCCCCcccC--HHHHHHHHHh-----cCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCc
Confidence 357899999887544333 2356666654 55699999999999999999999998644433221 111357
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~~ 155 (741)
.++||+|+.-.|++.+.|+.|+.|+ .+.+ +|. -|+.+.+++.- ....|++ ++++++
T Consensus 196 rv~iEkyl~~PRHIEiQV~aD~HGN---vv~L--gER---------------dCSlQRRhQKV---IEEAPaP~l~~~~R 252 (645)
T COG4770 196 RVFIEKYLDKPRHIEIQVFADQHGN---VVHL--GER---------------DCSLQRRHQKV---IEEAPAPFLTEETR 252 (645)
T ss_pred eEehhhhcCCCceEEEEEEecCCCC---EEEe--ecc---------------ccchhhhcchh---hhcCCCCCCCHHHH
Confidence 9999999975699999999986654 2322 222 24444333322 1234443 799999
Q ss_pred HHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHH
Q 004630 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 235 (741)
Q Consensus 156 ~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~l 235 (741)
+.|.+.|++++++.|+.|.+.|+|++ +.+|.+||+|+|+|-+... |-...-+|+ ||
T Consensus 253 ~amg~aAv~~a~avgY~gAGTVEFiv-----------------d~~~~f~FlEMNTRLQVEH----PVTE~iTGi---DL 308 (645)
T COG4770 253 EAMGEAAVAAAKAVGYVGAGTVEFIV-----------------DADGNFYFLEMNTRLQVEH----PVTELITGI---DL 308 (645)
T ss_pred HHHHHHHHHHHHhcCCCcCceEEEEE-----------------cCCCcEEEEEeecceeccc----cchhhhhhh---HH
Confidence 99999999999999999999999998 5778899999999988865 334445687 89
Q ss_pred HHHHHHHHHhhCCCCC--CCCCccccCCCCCCCCCCccccccccCceEEEEEecC
Q 004630 236 LRTIIGHACSRFPNLA--SYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGG 288 (741)
Q Consensus 236 l~~ii~~a~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG 288 (741)
++++|+.|......+. ...-.+++++.||+++||.++|.|+.+++.....=.|
T Consensus 309 VewqiRVA~GekL~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~ 363 (645)
T COG4770 309 VEWQIRVASGEKLPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAG 363 (645)
T ss_pred HHHHHHHhcCCcCCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCCC
Confidence 9999999976643332 1111279999999999999999999998887776666
No 91
>PRK08462 biotin carboxylase; Validated
Probab=99.77 E-value=1e-17 Score=189.69 Aligned_cols=224 Identities=15% Similarity=0.125 Sum_probs=146.5
Q ss_pred CccCCCCCCCeE--EEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHh----HhhCC
Q 004630 1 MSKQGFITVPSF--LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI----ILEGI 74 (741)
Q Consensus 1 l~~~GIp~p~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~----~~~~~ 74 (741)
|+++|||+||+. .+.+.+ ++.++++++ +||+||||..+++|+||.+++|.+|+..+.... .....
T Consensus 125 l~~~gIp~pp~~~~~~~~~~----~~~~~~~~~-----g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~ 195 (445)
T PRK08462 125 MKRAGVPVIPGSDGALKSYE----EAKKIAKEI-----GYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFG 195 (445)
T ss_pred HHHCCCCCCCCcccccCCHH----HHHHHHHHc-----CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccC
Confidence 467999999975 333332 555566544 559999999999999999999999976655432 11122
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
++.++||+||+|++|++|.++.+.+| ..+.+ ++.. + .+.....++ ....|+ .++++
T Consensus 196 ~~~vlvEe~i~g~~e~~v~v~~~~~g---~~~~~--g~~~--~----------~~~~~~~~~------~~~~p~~~l~~~ 252 (445)
T PRK08462 196 DGTMYMEKFINNPRHIEVQILGDKHG---NVIHV--GERD--C----------SLQRRHQKL------IEESPAVVLDEK 252 (445)
T ss_pred CCcEEEeccCCCCeEEEEEEEECCCC---CEEEE--Eecc--c----------cceecccce------EEEcCCCCCCHH
Confidence 45799999998668999999975432 22221 1111 0 000000111 123455 58899
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
..++|++.|.+++++||+.|.+++||++ +++|++||+|||||++.+. .+ ....+|+|+.
T Consensus 253 ~~~~i~~~a~~~~~alg~~G~~~ve~~~-----------------~~~g~~~viEiNpR~~~~~--~~--~~~~~Gidl~ 311 (445)
T PRK08462 253 TRERLHETAIKAAKAIGYEGAGTFEFLL-----------------DSNLDFYFMEMNTRLQVEH--TV--SEMVSGLDLI 311 (445)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEEEE-----------------eCCCCEEEEEEECCcCcCc--ce--ehhhhCCCHH
Confidence 9999999999999999999999999987 4567899999999997432 11 2345699765
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCccccCCCCCCCCCCccccccccCceE
Q 004630 234 NILRTIIGHACSRFP-NLASYNSVSSHLPGRSSGSKPTEALNKREGIRE 281 (741)
Q Consensus 234 ~ll~~ii~~a~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 281 (741)
++ +++.++.... ........++++..|+.++++. .+.+..++..
T Consensus 312 ~~---~i~~a~G~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~l~ 356 (445)
T PRK08462 312 EW---MIKIAEGEELPSQESIKLKGHAIECRITAEDPK-KFYPSPGKIT 356 (445)
T ss_pred HH---HHHHHCCCCcccccccCCceeEEEEEeccCCCC-ceecccCEEe
Confidence 54 4555555421 1111122345667777777664 3556666543
No 92
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.77 E-value=7.1e-18 Score=165.18 Aligned_cols=161 Identities=20% Similarity=0.182 Sum_probs=120.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCC-CCcceEEeCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG-SSIGVTVAYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~-~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||||||..+.+.+ ++.++++++|+ |+|+|++.+| .++|..++++.+|+..+...+ ...++|
T Consensus 1 l~~~gip~~~~~~i~~~~----~l~~a~~~iG~-----P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~----~~~~~i 67 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE----DLEEAAESIGF-----PAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL----GGGPCI 67 (172)
T ss_dssp HHHTT--B-EEEEESSHH----HHHHHHHHHTS-----SEEEEESSSSCTTTTEEEESSGGGHHHHHHHT----TTSCEE
T ss_pred CcccCCCCCCeEEECCHH----HHHHHHHHcCC-----CEEEEccCcCcCCCccEEECCHHHHHHHHHhc----CCCcEE
Confidence 578999999999999877 78877776665 9999966555 589999999999975554433 357899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
+|+||+..+|+||.+.++.+|. ....++.|-.- .+++ ......|+++++++.++++
T Consensus 68 lE~~v~f~~EiSvivaR~~~G~---~~~yp~~en~~----------~~~i-----------l~~s~~Pa~i~~~~~~~a~ 123 (172)
T PF02222_consen 68 LEEFVPFDREISVIVARDQDGE---IRFYPPVENVH----------RDGI-----------LHESIAPARISDEVEEEAK 123 (172)
T ss_dssp EEE---ESEEEEEEEEEETTSE---EEEEEEEEEEE----------ETTE-----------EEEEEESCSS-HHHHHHHH
T ss_pred EEeccCCcEEEEEEEEEcCCCC---EEEEcCceEEE----------ECCE-----------EEEEECCCCCCHHHHHHHH
Confidence 9999987899999999976542 34455544221 1122 2346789999999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCc-EEEEeecCCCCC
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGT-ILFTDINLISGM 215 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~-~~vlEiN~~Pgl 215 (741)
++|.+++++|++.|+..|+||+ +++|+ +||+||.|||.-
T Consensus 124 ~ia~~i~~~l~~vGv~~VE~Fv-----------------~~~g~~v~vNEiaPRpHn 163 (172)
T PF02222_consen 124 EIARKIAEALDYVGVLAVEFFV-----------------TKDGDEVLVNEIAPRPHN 163 (172)
T ss_dssp HHHHHHHHHHTSSEEEEEEEEE-----------------ETTSTEEEEEEEESS--G
T ss_pred HHHHHHHHHcCcEEEEEEEEEE-----------------ecCCCEEEEEeccCCccC
Confidence 9999999999999999999998 57887 999999999873
No 93
>PRK07206 hypothetical protein; Provisional
Probab=99.76 E-value=2.1e-17 Score=185.68 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=131.2
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh-----CCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-----GID 75 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~-----~~~ 75 (741)
|+++|||+|++..+.+.+ ++.++++++++ .++|+||||..+++|+||.+++|.+|+.+++.+++.. ...
T Consensus 116 l~~~gi~~p~~~~~~~~~----e~~~~~~~~g~--~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ 189 (416)
T PRK07206 116 LAEAGLPAARQINTADWE----EAEAWLRENGL--IDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVN 189 (416)
T ss_pred HHHcCCCcccEEecCCHH----HHHHHHHhcCC--CCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCC
Confidence 467999999999887655 67777765543 3559999999999999999999999987777665431 123
Q ss_pred CeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCe----EEEcCCCCC
Q 004630 76 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV----AYHTPPRFP 151 (741)
Q Consensus 76 ~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~P~~~~ 151 (741)
..+||||||+| .||+|.++.. +| ..++..... +..+....... ....| .+
T Consensus 190 ~~~lvEe~i~G-~E~sv~~~~~-~G---~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~p--~~ 243 (416)
T PRK07206 190 ETVLVQEYLIG-TEYVVNFVSL-DG---NHLVTEIVR-------------------YHKTSLNSGSTVYDYDEFLD--YS 243 (416)
T ss_pred CeEEEEEcccc-EEEEEEEEEE-CC---EEEEEEeEE-------------------eeecccCCCCceecccccCC--cc
Confidence 58999999998 9999999853 11 222211111 00000000000 01133 35
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-CeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCC
Q 004630 152 IVVINSIREGASLLFQRLGLC-DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGF 230 (741)
Q Consensus 152 ~~~~~~i~~~a~~~~~aLg~~-g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~ 230 (741)
....++|.+.+.+++++||++ |..++||++ +++| +|++|||||+|-+... ......+|+
T Consensus 244 ~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~-----------------~~~g-~~liEin~R~~G~~~~--~~~~~~~G~ 303 (416)
T PRK07206 244 EPEYQELVDYTKQALDALGIKNGPAHAEVML-----------------TADG-PRLIEIGARLDGGLHP--DVARLATGD 303 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCccCCceEEEEE-----------------cCCC-CEEEEECCccCCCCcc--chhhhhcCc
Confidence 677899999999999999995 999999987 4556 8999999999843322 223467899
Q ss_pred CHHHHHHHHHHHHHhh
Q 004630 231 SHSNILRTIIGHACSR 246 (741)
Q Consensus 231 ~~~~ll~~ii~~a~~r 246 (741)
|+.++ +++.++.+
T Consensus 304 d~~~~---~~~~~lg~ 316 (416)
T PRK07206 304 SQLDA---TVESLADP 316 (416)
T ss_pred CHHHH---HHHHHhCc
Confidence 86554 34445443
No 94
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.76 E-value=2.2e-17 Score=185.59 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=131.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh----CCCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~----~~~~ 76 (741)
|+++|||+|+|..+.+.+ ++.++++++ +||+||||..+++|+||.+++|.+|+.+++..++.. ....
T Consensus 110 l~~~gip~p~~~~~~~~~----~~~~~~~~~-----~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~ 180 (420)
T PRK00885 110 MARYGIPTAAYETFTDAE----EALAYLDEK-----GAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGA 180 (420)
T ss_pred HHHcCCCCCCeEEeCCHH----HHHHHHHHc-----CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCC
Confidence 468999999999887655 566666544 459999999999999999999999987777766532 1245
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~~ 155 (741)
.+||||||+| +||||.++.++ . ....++..+. .+..++...+...+. +.+..|++ ++++..
T Consensus 181 ~vlvEe~i~G-~E~sv~~~~~g--~--~~~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~~l~~~~~ 242 (420)
T PRK00885 181 RVVIEEFLDG-EEASFFAFVDG--E--NVLPLPTAQD------------HKRAGDGDTGPNTGG-MGAYSPAPVVTEEVV 242 (420)
T ss_pred eEEEEEccCC-cEEEEEEEECC--C--ceEeceeeEe------------eeecccCCCCCCCCC-CceeccCCCCCHHHH
Confidence 8999999998 99999999742 2 1222222211 112233333333333 44567775 788887
Q ss_pred HHHHH-HHHHHHHH---hCC--CCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcC
Q 004630 156 NSIRE-GASLLFQR---LGL--CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVG 229 (741)
Q Consensus 156 ~~i~~-~a~~~~~a---Lg~--~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G 229 (741)
+++++ ++.++.++ +|+ +|+.++||++ +++| +||+|+|||+|-... ...+ ...+
T Consensus 243 ~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~-----------------t~~g-~~viEin~R~g~~~~--~~~~-~~~~ 301 (420)
T PRK00885 243 ERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMI-----------------TKDG-PKVIEFNARFGDPET--QVVL-PRLK 301 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEE-----------------ECCC-cEEEEEecccCCccH--Hhhh-hhcc
Confidence 77765 66665554 443 5889999987 4556 899999999985432 1222 2234
Q ss_pred CCHHHHHHHHHHHHHhh
Q 004630 230 FSHSNILRTIIGHACSR 246 (741)
Q Consensus 230 ~~~~~ll~~ii~~a~~r 246 (741)
. +++..++..+...
T Consensus 302 ~---d~~~~~~~~~~g~ 315 (420)
T PRK00885 302 S---DLVELLLAAADGK 315 (420)
T ss_pred C---CHHHHHHHHHcCC
Confidence 3 5666666666554
No 95
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.76 E-value=1e-17 Score=165.86 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=107.2
Q ss_pred ccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCC--CCeEE
Q 004630 2 SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI--DDRVV 79 (741)
Q Consensus 2 ~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~--~~~vl 79 (741)
+++|||+|++..+.+.+ ++.+++..++ ||+||||..+++|.||.++++.+++.+.+..+..... ...+|
T Consensus 13 ~~~gv~~P~~~~~~~~~----~~~~~~~~~~-----~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~i 83 (184)
T PF13535_consen 13 KKAGVPVPKTRIVDSEE----ELRAFAEDLG-----FPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNGPVI 83 (184)
T ss_dssp HHHTS----EEEECSHH----HHHHHHHHSS-----SSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEE
T ss_pred HHcCcCCCCEEEECCHH----HHHHHHHHcC-----CCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCccEE
Confidence 46899999999988765 6777776555 5999999999999999999999998777666543222 46899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
|||||+| .||++.++-. +| ..+++...+..... ..............+ .+....++++
T Consensus 84 vqe~i~g-~e~~~~~~~~-~G---~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~~~~~~~~ 141 (184)
T PF13535_consen 84 VQEYIPG-DEYSVDGVVD-DG---EVVFAGISRYVRQS---------------PGHFSGGVPTGYSVP--SEPPLPEELR 141 (184)
T ss_dssp EEE---S-EEEEEEEEEE-TT---EEEEEEEEEEEEEE---------------TCCCSSSEEEEEEES----CEHHHHHH
T ss_pred EEEeeee-eeEEEEEEEE-cc---eEEEEEEEEEeccc---------------ccccccceeeeeecc--cccccHHHHH
Confidence 9999997 9999998864 22 23333333222110 000000011222333 2333448899
Q ss_pred HHHHHHHHHhCC-CCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCC
Q 004630 160 EGASLLFQRLGL-CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214 (741)
Q Consensus 160 ~~a~~~~~aLg~-~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pg 214 (741)
+.+.++++++|+ .|++++||++ +++|++||+|+|||+|
T Consensus 142 ~~~~~~~~~~g~~~G~~~id~~~-----------------~~~g~~~~iEiN~R~~ 180 (184)
T PF13535_consen 142 DLARKLLRALGYRNGFFHIDFIV-----------------DPDGELYFIEINPRFG 180 (184)
T ss_dssp HHHHHHHHHHT--SEEEEEEEEE-----------------ETCCEEEEEEEESS--
T ss_pred HHHHHHHHHcCCceEEEEEEEEE-----------------eCCCCEEEEEECccCC
Confidence 999999999999 8999999997 5679999999999987
No 96
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.75 E-value=3.2e-17 Score=182.86 Aligned_cols=186 Identities=17% Similarity=0.099 Sum_probs=131.5
Q ss_pred ccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhC--CCCeEE
Q 004630 2 SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG--IDDRVV 79 (741)
Q Consensus 2 ~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~--~~~~vl 79 (741)
+++|||+|+|..+++.+ ++.+++..+ +||+|+||..+++|+||.+++|.+|+.++...++..+ ....+|
T Consensus 123 ~~~gip~p~~~~~~s~~----~l~~~~~~~-----g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~l 193 (395)
T PRK09288 123 EELGLPTSPYRFADSLE----ELRAAVEEI-----GYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVI 193 (395)
T ss_pred HhCCCCCCCceEECCHH----HHHHHHHhc-----CCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEE
Confidence 36899999999998765 666666544 5599999999999999999999999877666554211 135899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
|||||+++.|++|.++.+.++ .....++.+.. . ..+.......|+.+++++.++++
T Consensus 194 vEefi~~~~E~sv~~~~~~~~---~~~~~~~~~~~----------------~-----~~~~~~~~~~p~~l~~~~~~~i~ 249 (395)
T PRK09288 194 VEEFIDFDYEITLLTVRAVDG---GTHFCAPIGHR----------------Q-----EDGDYRESWQPQPMSPAALEEAQ 249 (395)
T ss_pred EEEecCCCEEEEEEEEEcCCC---CEEEecCcccE----------------E-----ECCEEEEEECCCCCCHHHHHHHH
Confidence 999999449999999975332 12222221100 0 00111233468889999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
+++.+++++||..|+.++||++ +++ .+||+|+|||||-+.... +. ..|++.. ..+
T Consensus 250 ~~~~~~~~~L~~~G~~~ve~~~-----------------~~~-~~~viEinpR~~~~~~~~---~~-~~g~~~~---~~~ 304 (395)
T PRK09288 250 EIAKKVTDALGGRGLFGVELFV-----------------KGD-EVYFSEVSPRPHDTGMVT---LI-SQNLSEF---ELH 304 (395)
T ss_pred HHHHHHHHHcCCeeEEEEEEEE-----------------eCC-eEEEEEecCCCCCCccee---ee-ecccCHH---HHH
Confidence 9999999999999999999987 444 599999999998543221 11 2277653 344
Q ss_pred HHHHHh
Q 004630 240 IGHACS 245 (741)
Q Consensus 240 i~~a~~ 245 (741)
++.++.
T Consensus 305 ~~~~lG 310 (395)
T PRK09288 305 ARAILG 310 (395)
T ss_pred HHHHcC
Confidence 445544
No 97
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.75 E-value=3.8e-17 Score=201.90 Aligned_cols=226 Identities=18% Similarity=0.232 Sum_probs=156.9
Q ss_pred CccCCCCCCCeE-EEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHh---h-CCC
Q 004630 1 MSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL---E-GID 75 (741)
Q Consensus 1 l~~~GIp~p~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~---~-~~~ 75 (741)
|+++|||+||+. .+.+.+ ++.++++++ +||+||||..+++|+||.+|++.+|+..++..+.. . ..+
T Consensus 122 l~~~GVPt~p~~~lv~s~d----ea~~~a~~i-----gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~ 192 (1201)
T TIGR02712 122 AEAAGVPLLPGTGLLSSLD----EALEAAKEI-----GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGD 192 (1201)
T ss_pred HHHCCCCCCCceeecCCHH----HHHHHHHhc-----CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCC
Confidence 467999998855 445443 565566544 56999999999999999999999997655544321 1 124
Q ss_pred CeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHH
Q 004630 76 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVV 154 (741)
Q Consensus 76 ~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~ 154 (741)
..++||+||+|++|++|.++.++.+ ..+.+ ++.. +++..+.. ......|+ .+++++
T Consensus 193 ~~vlVEefI~g~~eveV~v~~Dg~g---~vv~l--g~rd---------------~s~qr~~~---k~vee~Pap~l~~~~ 249 (1201)
T TIGR02712 193 AGVFLERFVENARHVEVQIFGDGKG---KVVAL--GERD---------------CSLQRRNQ---KVVEETPAPNLPPET 249 (1201)
T ss_pred CcEEEEecCCCCEEEEEEEEECCCC---eEEEe--eEEE---------------eeeEecCc---cEEEEcCCCCCCHHH
Confidence 5799999998669999999986443 22222 2211 11111100 01233555 589999
Q ss_pred HHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHH
Q 004630 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSN 234 (741)
Q Consensus 155 ~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ 234 (741)
.++|++.|.+++++|+++|.+++||+++ .++|++||+|||||++... +.....+|+|
T Consensus 250 ~~~l~~~a~~l~~aLgy~G~~~VEfild----------------~~~g~~y~lEVNpRlq~~~----~lte~~tGvD--- 306 (1201)
T TIGR02712 250 RQALLAAAERLGEAVNYRSAGTVEFIYD----------------EARDEFYFLEVNTRLQVEH----PVTEMVTGLD--- 306 (1201)
T ss_pred HHHHHHHHHHHHHhcCccceEEEEEEEE----------------CCCCCEEEEEEECCcCcch----hhHHHHhCCC---
Confidence 9999999999999999999999999983 2357899999999997542 3344567985
Q ss_pred HHHHHHHHHHhhCCCCCCC----CCccccCCCCCCCCCCccccccccCceE
Q 004630 235 ILRTIIGHACSRFPNLASY----NSVSSHLPGRSSGSKPTEALNKREGIRE 281 (741)
Q Consensus 235 ll~~ii~~a~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 281 (741)
++..+++.|..+...+... ...++.+..|+.++++...+.++.++..
T Consensus 307 lve~~ir~a~G~~~~~~~~~~~~~~~g~ai~~riyae~p~~~~~p~~G~l~ 357 (1201)
T TIGR02712 307 LVEWMIRIAAGELPDFASLNISLTPRGAAIEARVYAENPAKNFQPSPGLLT 357 (1201)
T ss_pred HHHHHHHHHcCCCCCccccccccccceEEEEEEEeccCcccCcCCCCceee
Confidence 5566677776664333211 2346788889999998888888777654
No 98
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=99.73 E-value=3.1e-17 Score=176.23 Aligned_cols=233 Identities=16% Similarity=0.159 Sum_probs=166.2
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHh---hC-CCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL---EG-IDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~---~~-~~~ 76 (741)
|+++|+|+.|.+-....+ .+++.+.+.+ ++||++||+..||+++|+.++.+.+|........-. .+ .++
T Consensus 119 m~~AgVp~vpG~~g~~qs--~e~~~~~a~e-----IgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd 191 (670)
T KOG0238|consen 119 MKAAGVPLVPGYHGEDQS--DEEAKKVARE-----IGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDD 191 (670)
T ss_pred HHhcCCccccCccccccc--HHHHHHHHHh-----cCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcc
Confidence 467899998876433222 2356666654 556999999999999999999999886543332211 12 257
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~ 155 (741)
.+++|+||+..|++.|.|++|..|+ .+.+ +|+ -|+.+.+.+.- ....|+ .++++++
T Consensus 192 ~~llEkfi~npRHiEvQv~gD~hGn---av~l--~ER---------------dCSvQRRnQKi---iEEaPap~l~~e~R 248 (670)
T KOG0238|consen 192 GMLLEKFIDNPRHIEVQVFGDKHGN---AVHL--GER---------------DCSVQRRNQKI---IEEAPAPNLPEETR 248 (670)
T ss_pred hhhHHHhccCCceEEEEEEecCCCc---EEEe--ccc---------------ccchhhhhhhh---hhcCCCCCCCHHHH
Confidence 8999999987799999999876554 2221 222 23333222211 122344 4899999
Q ss_pred HHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHH
Q 004630 156 NSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNI 235 (741)
Q Consensus 156 ~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~l 235 (741)
.++.+.|+++++++|+.|.+.|+|++ |.++++||+|+|+|-.... |...--+|. ||
T Consensus 249 ~~lgeaAv~aa~avgY~~aGTVEFi~-----------------D~~~~FyFmEmNTRLQVEH----PvTEmItg~---DL 304 (670)
T KOG0238|consen 249 RALGEAAVRAAKAVGYVGAGTVEFIV-----------------DSKDNFYFMEMNTRLQVEH----PVTEMITGT---DL 304 (670)
T ss_pred HHHHHHHHHHHHhhCCcccceEEEEE-----------------cCCCcEEEEEeeceeeecc----cchhhccch---HH
Confidence 99999999999999999999999998 4678899999999988764 222222465 89
Q ss_pred HHHHHHHHHhhCCCCCCC--CCccccCCCCCCCCCCccccccccCceEEEEEecC
Q 004630 236 LRTIIGHACSRFPNLASY--NSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGG 288 (741)
Q Consensus 236 l~~ii~~a~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG 288 (741)
++++|+.|......+++- .-.+++++.|+++++|...|.|+.+++.= +.+=+
T Consensus 305 VewqiRvA~ge~lp~~q~ei~l~GhafE~RiyAEdp~~~f~P~~G~L~~-~~~p~ 358 (670)
T KOG0238|consen 305 VEWQIRVAAGEPLPLKQEEIPLNGHAFEARIYAEDPYKGFLPSAGRLVY-YSFPG 358 (670)
T ss_pred HHHHHHHhcCCCCCCCcceeeecceEEEEEEeecCCcccCCCCCcccee-eccCC
Confidence 999999998775443321 11279999999999999999999998754 44444
No 99
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.73 E-value=8e-17 Score=157.79 Aligned_cols=164 Identities=26% Similarity=0.275 Sum_probs=119.0
Q ss_pred HHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCC-CCCCcceEEeCCccchHHHHHHHHHHHhcCCCC
Q 004630 475 LADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPAR-DGCSTGVARLCCAEDLTVYVKALEECLLRIPPN 553 (741)
Q Consensus 475 l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~-~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~ 553 (741)
|+++|||||+|..+.+.+ .+..+.+++ +||+|+|+.. +..++|..++++.+|+.. +++.. .
T Consensus 1 l~~~gip~~~~~~i~~~~--------~l~~a~~~i-G~P~vlK~~~~GYDGkGq~~i~~~~dl~~---a~~~~-~----- 62 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE--------DLEEAAESI-GFPAVLKTRRGGYDGKGQFVIRSEEDLEK---AWQEL-G----- 62 (172)
T ss_dssp HHHTT--B-EEEEESSHH--------HHHHHHHHH-TSSEEEEESSSSCTTTTEEEESSGGGHHH---HHHHT-T-----
T ss_pred CcccCCCCCCeEEECCHH--------HHHHHHHHc-CCCEEEEccCcCcCCCccEEECCHHHHHH---HHHhc-C-----
Confidence 578999999999997643 345566788 6999999655 556899999999999985 33332 1
Q ss_pred CcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCc
Q 004630 554 SFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGD 633 (741)
Q Consensus 554 ~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~ 633 (741)
...+|+|+||+.. +|+++.+..+..+.....|..+....++
T Consensus 63 ---------------~~~~ilE~~v~f~------------------------~EiSvivaR~~~G~~~~yp~~en~~~~~ 103 (172)
T PF02222_consen 63 ---------------GGPCILEEFVPFD------------------------REISVIVARDQDGEIRFYPPVENVHRDG 103 (172)
T ss_dssp ---------------TSCEEEEE---ES------------------------EEEEEEEEEETTSEEEEEEEEEEEEETT
T ss_pred ---------------CCcEEEEeccCCc------------------------EEEEEEEEEcCCCCEEEEcCceEEEECC
Confidence 4789999999986 6999998887544333334444333333
Q ss_pred cccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCc-EEEEecCCCCCCCCC
Q 004630 634 ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGE-VLIIEVNTVPGMTPS 709 (741)
Q Consensus 634 ~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~-~~viEINt~Pg~t~~ 709 (741)
+++ ..+.|++ +++++.++++++|.+++++|+..|...|+||++. +|+ +|||||.|+|.-+.+
T Consensus 104 il~----------~s~~Pa~---i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSGh 166 (172)
T PF02222_consen 104 ILH----------ESIAPAR---ISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPHNSGH 166 (172)
T ss_dssp EEE----------EEEESCS---S-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEET-TSTEEEEEEEESS--GGGG
T ss_pred EEE----------EEECCCC---CCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEec-CCCEEEEEeccCCccCccc
Confidence 332 3367887 6899999999999999999999999999999996 687 999999999986554
No 100
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.73 E-value=1e-16 Score=170.34 Aligned_cols=180 Identities=12% Similarity=0.126 Sum_probs=122.5
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHH--hHhhCCCCeE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKG--IILEGIDDRV 78 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~--~~~~~~~~~v 78 (741)
|+++|||+|++..+.+.+ ++.++... .+||+|+||..+++|+||.++++.+++.+.+.. .+.......+
T Consensus 95 l~~~gip~P~t~~~~~~~----~~~~~~~~-----~~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ 165 (280)
T TIGR02144 95 LAKAGVPTPRTYLAFDRE----AALKLAEA-----LGYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLF 165 (280)
T ss_pred HHHCCcCCCCeEeeCCHH----HHHHHHHH-----cCCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeE
Confidence 467999999998876543 45444443 346999999999999999999999987554422 2211234679
Q ss_pred EEeeccCC-CeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHH
Q 004630 79 VVELFLEG-GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157 (741)
Q Consensus 79 lVEe~i~G-~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~ 157 (741)
|+|+||+| ++|+++.+++ +. ... .+. +. . -++......+ ....|..+++ +
T Consensus 166 ivQefI~~~~~d~~v~vig----~~--~~~----~~~-r~--------~---~~~~~~~~~g---~~~~~~~~~~----~ 216 (280)
T TIGR02144 166 YIQEYINKPGRDIRVFVIG----DE--AIA----AIY-RY--------S---NHWRTNTARG---GKAEPCPLDE----E 216 (280)
T ss_pred EEEcccCCCCCceEEEEEC----CE--EEE----EEE-Ec--------C---CchhhhhhcC---CceeccCCCH----H
Confidence 99999974 4899999884 21 111 011 10 0 0111111111 1334555664 4
Q ss_pred HHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHH
Q 004630 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237 (741)
Q Consensus 158 i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~ 237 (741)
++++|++++++||+ ++++|||++ +++|++||+|||++||++.. ...+|+++.+++.
T Consensus 217 ~~~~a~~~~~~lg~-~~~~vD~~~-----------------~~~g~~~v~EvN~~p~~~~~------~~~~g~~~~~~~~ 272 (280)
T TIGR02144 217 VEELAVKAAEAVGG-GVVAIDIFE-----------------SKERGLLVNEVNHVPEFKNS------VRVTGVNVAGEIL 272 (280)
T ss_pred HHHHHHHHHHHhCC-CeEEEEEEE-----------------cCCCCEEEEEEeCCcchhhh------hHhhCCCHHHHHH
Confidence 67889999999996 699999987 46778999999999998652 3567999988776
Q ss_pred HHHHH
Q 004630 238 TIIGH 242 (741)
Q Consensus 238 ~ii~~ 242 (741)
..+..
T Consensus 273 ~~~~~ 277 (280)
T TIGR02144 273 EYAVS 277 (280)
T ss_pred HHHHH
Confidence 65543
No 101
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.72 E-value=1.4e-16 Score=180.89 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=129.6
Q ss_pred CccCCCCCCCe--EEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHh----hCC
Q 004630 1 MSKQGFITVPS--FLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGI 74 (741)
Q Consensus 1 l~~~GIp~p~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~----~~~ 74 (741)
|+++|||+|++ ..+.+. +++.++++.+ +||+||||..+++|+||.++++.+|+.+++..+.. ...
T Consensus 123 l~~~gIp~p~~~~~~~~~~----~e~~~~~~~~-----~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~ 193 (450)
T PRK06111 123 MQAAGVPVVPGITTNLEDA----EEAIAIARQI-----GYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFG 193 (450)
T ss_pred HHHCCCCCCCCcCcCcCCH----HHHHHHHHHh-----CCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcC
Confidence 46799999997 333322 3555566544 45999999999999999999999998766655321 113
Q ss_pred CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHH
Q 004630 75 DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIV 153 (741)
Q Consensus 75 ~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~ 153 (741)
+..++||+||+|.+|+++.++.+.+|. .+.+.+.+. .+.....+ .....|. .++++
T Consensus 194 ~~~~lvEe~i~g~~e~~v~v~~~~~g~---~~~~~~~~~--------------~~~~~~~~------~~~~~p~~~~~~~ 250 (450)
T PRK06111 194 NGEMYIEKYIEDPRHIEIQLLADTHGN---TVYLWEREC--------------SVQRRHQK------VIEEAPSPFLDEE 250 (450)
T ss_pred CCcEEEEcccCCCcEEEEEEEEcCCCC---EEEEEeecc--------------cccccccc------eEEecCCCCCCHH
Confidence 458999999997689999998754332 122111100 00000000 1111233 37888
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.+++++++.+++++||++|++++||++ +++|++||+|||||++.. .+.....+|+|+
T Consensus 251 ~~~~i~~~a~~~~~~lg~~g~~~ve~~~-----------------~~~g~~~viEiN~R~~~~----~~~~~~~~Gvd~- 308 (450)
T PRK06111 251 TRKAMGERAVQAAKAIGYTNAGTIEFLV-----------------DEQKNFYFLEMNTRLQVE----HPVTEEITGIDL- 308 (450)
T ss_pred HHHHHHHHHHHHHHHcCCCCceeEEEEE-----------------cCCCCEEEEEEECCcCCc----chhhHHHhCcCH-
Confidence 9999999999999999999999999987 567789999999999743 233455689965
Q ss_pred HHHHHHHHHHHhh
Q 004630 234 NILRTIIGHACSR 246 (741)
Q Consensus 234 ~ll~~ii~~a~~r 246 (741)
+..+++.++..
T Consensus 309 --~~~~i~~~~G~ 319 (450)
T PRK06111 309 --VEQQLRIAAGE 319 (450)
T ss_pred --HHHHHHHhcCC
Confidence 44555566554
No 102
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.72 E-value=2.1e-16 Score=161.62 Aligned_cols=215 Identities=22% Similarity=0.261 Sum_probs=158.1
Q ss_pred ccCccEEEEccCCCCCCchHHH--HHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCc
Q 004630 420 KENQATVFIAVHGGIGEDGTLQ--SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 497 (741)
Q Consensus 420 ~~~~Dvvf~~lhG~~GEdg~iq--~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~ 497 (741)
++++|.+.|-+.- -... --||..|.-. -+...|..++||+...+++. .++.|+||.+|.+....+
T Consensus 73 rekPd~IVpEiEA-----I~td~L~elE~~G~~V-VP~ArAt~ltMnRegiRrlA--AeeLglpTs~Y~fa~s~~----- 139 (394)
T COG0027 73 REKPDYIVPEIEA-----IATDALVELEEEGYTV-VPNARATKLTMNREGIRRLA--AEELGLPTSKYRFADSLE----- 139 (394)
T ss_pred hhCCCeeeehhhh-----hhHHHHHHHHhCCceE-ccchHHHHhhhcHHHHHHHH--HHHhCCCCccccccccHH-----
Confidence 4567888776531 1122 2357788864 57889999999999999983 578999999998886543
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeec
Q 004630 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPF 577 (741)
Q Consensus 498 ~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEef 577 (741)
.+.+..+++ +|||+|||..++|++|-+.|++.++++. |.+.+... +++ ...+++||+|
T Consensus 140 ---e~~~a~~~i-GfPcvvKPvMSSSGkGqsvv~~~e~ve~---AW~~A~~g--------~R~-------~~~RVIVE~f 197 (394)
T COG0027 140 ---ELRAAVEKI-GFPCVVKPVMSSSGKGQSVVRSPEDVEK---AWEYAQQG--------GRG-------GSGRVIVEEF 197 (394)
T ss_pred ---HHHHHHHHc-CCCeecccccccCCCCceeecCHHHHHH---HHHHHHhc--------CCC-------CCCcEEEEEE
Confidence 356667889 6999999999999999999999999984 66666532 111 1578999999
Q ss_pred ccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCC
Q 004630 578 VETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIM 657 (741)
Q Consensus 578 I~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l 657 (741)
|+-+ .|++.-.+..-+...+++..+-. ...-.||.+.| -|.. +
T Consensus 198 v~fd------------------------~EiTlLtvr~~~~~~~Fc~PIGH--rq~dgdY~ESW--------QP~~---m 240 (394)
T COG0027 198 VKFD------------------------FEITLLTVRAVDGTGSFCAPIGH--RQEDGDYRESW--------QPQE---M 240 (394)
T ss_pred ecce------------------------EEEEEEEEEEecCCCCcCCCccc--ccCCCChhccc--------Cccc---c
Confidence 9874 36665544432222223322211 12223555443 3544 6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCC
Q 004630 658 STEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~ 708 (741)
++...++.+.+|+++.++||..|++.|++|+. .+++||.|+.|+|.=|.
T Consensus 241 S~~al~~A~~IA~~vt~aLGG~GiFGVElfv~--gDeV~FsEVSPRPHDTG 289 (394)
T COG0027 241 SEAALEEAQSIAKRVTDALGGRGLFGVELFVK--GDEVIFSEVSPRPHDTG 289 (394)
T ss_pred CHHHHHHHHHHHHHHHHhhcCccceeEEEEEe--CCEEEEeecCCCCCCCc
Confidence 89999999999999999999999999999998 36899999999998775
No 103
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.72 E-value=1.6e-16 Score=178.09 Aligned_cols=247 Identities=20% Similarity=0.241 Sum_probs=177.6
Q ss_pred hHHHHHHhc-cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeC
Q 004630 412 INEWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRK 490 (741)
Q Consensus 412 ~~~~~~~~~-~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~ 490 (741)
+++.+..++ ...|.+-|-. |..-|+-.....|...||-++|+.+......-||...+.. ..++|+|+.|..--..
T Consensus 69 IdeII~iAk~~gaDaIhPGY-GfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~---A~~agvPvipgt~~~~ 144 (1149)
T COG1038 69 IDEIIRIAKRSGADAIHPGY-GFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNA---AIKAGVPVIPGTDGPI 144 (1149)
T ss_pred HHHHHHHHHHcCCCeecCCc-ccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHH---HHHcCCCccCCCCCCc
Confidence 334444433 3456654432 4444999999999999999999999999999999999998 8999999877532211
Q ss_pred ccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCC
Q 004630 491 EDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 570 (741)
Q Consensus 491 ~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~ 570 (741)
. . .+...++.++. +||++||.+.+||++|+.+|.+.++|.+ +++++... ...+.| ++
T Consensus 145 ~-----~-~ee~~~fa~~~-gyPvmiKA~~GGGGRGMR~vr~~~~l~~---~~~~AksE-----AkaAFG--------~~ 201 (1149)
T COG1038 145 E-----T-IEEALEFAEEY-GYPVMIKAAAGGGGRGMRVVRSEADLAE---AFERAKSE-----AKAAFG--------ND 201 (1149)
T ss_pred c-----c-HHHHHHHHHhc-CCcEEEEEccCCCccceeeecCHHHHHH---HHHHHHHH-----HHHhcC--------CC
Confidence 1 1 23345677888 6999999999999999999999999975 33333221 011223 68
Q ss_pred eEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCce-ecCceEEEccCCccccccccccCCCceEE
Q 004630 571 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH-SLMPSVTVKESGDILSLEEKFQGGTGINL 649 (741)
Q Consensus 571 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~-~~~~~~~i~~~~~~~d~~~ky~~g~~~~~ 649 (741)
.+.||+||+.. +.|++.+|++....+ -+. +. +-.+..- ......+
T Consensus 202 eVyvEk~ve~p------------------------kHIEVQiLgD~~GnvvHLf---ER--DCSvQRR-----hQKVVE~ 247 (1149)
T COG1038 202 EVYVEKLVENP------------------------KHIEVQILGDTHGNVVHLF---ER--DCSVQRR-----HQKVVEV 247 (1149)
T ss_pred cEEhhhhhcCc------------------------ceeEEEEeecCCCCEEEEe---ec--ccchhhc-----cceeEEe
Confidence 89999999987 699999999874332 111 10 1011111 1123456
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCC--------CCCCCchHHHHHHhcCC
Q 004630 650 TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP--------GMTPSTVLIHQALSEQP 721 (741)
Q Consensus 650 ~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~P--------g~t~~S~l~~~a~~a~~ 721 (741)
.|++. |++++.++|.+.|.++++..|..+...++|.++. +|+.|||||||+= -.|....+-.|...++|
T Consensus 248 APa~~--L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~-~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G 324 (1149)
T COG1038 248 APAPY--LSPELRDEICDDAVKLARNIGYINAGTVEFLVDE-DGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAG 324 (1149)
T ss_pred cCCCC--CCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcC-CCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhcc
Confidence 77765 8999999999999999999999999999999996 6899999999864 34455555555555544
Q ss_pred C
Q 004630 722 P 722 (741)
Q Consensus 722 ~ 722 (741)
.
T Consensus 325 ~ 325 (1149)
T COG1038 325 A 325 (1149)
T ss_pred C
Confidence 3
No 104
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.72 E-value=1.8e-16 Score=193.19 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=135.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|++..+.+.+ ++.++++. .+||+||||..+++|+||.+++|.+|+.+.+..+.. .....+||
T Consensus 115 L~~~GIp~P~~~~v~~~~----e~~~~~~~-----~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~-~~~~~~lv 184 (887)
T PRK02186 115 LRDHGIDVPRTHALALRA----VALDALDG-----LTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR-AGTRAALV 184 (887)
T ss_pred HHHcCCCCCCEEEeCCHH----HHHHHHHh-----CCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHh-cCCCcEEE
Confidence 467999999999987755 66666554 456999999999999999999999998776665543 23568999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~ 160 (741)
||||+| +||+|.++.++.+ ..++...+... .....+. ...+.+|..++++..+++.+
T Consensus 185 EEfI~G-~E~sVe~i~~~g~----~~i~~i~~k~~---------------~~~~~~v---e~g~~~P~~l~~~~~~~l~~ 241 (887)
T PRK02186 185 QAYVEG-DEYSVETLTVARG----HQVLGITRKHL---------------GPPPHFV---EIGHDFPAPLSAPQRERIVR 241 (887)
T ss_pred eecccC-CcEEEEEEEECCc----EEEEEEEeeec---------------CCCCCeE---EeccccCCCCCHHHHHHHHH
Confidence 999998 9999999865321 12222111110 0001111 12356788999999999999
Q ss_pred HHHHHHHHhCCC-CeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHH-HHHcCCCHHHHHHH
Q 004630 161 GASLLFQRLGLC-DFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQ-ASKVGFSHSNILRT 238 (741)
Q Consensus 161 ~a~~~~~aLg~~-g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~-~~~~G~~~~~ll~~ 238 (741)
.+.+++++||++ |+.++||++ ++ +.+||+|||||++- +.++.+ ....|+|+.+ .
T Consensus 242 ~~~~~l~aLG~~~G~~hvE~~~-----------------t~-~g~~liEIn~R~~G---~~i~~li~~a~Gvd~~~---~ 297 (887)
T PRK02186 242 TVLRALDAVGYAFGPAHTELRV-----------------RG-DTVVIIEINPRLAG---GMIPVLLEEAFGVDLLD---H 297 (887)
T ss_pred HHHHHHHHcCCCcCceEEEEEE-----------------EC-CCEEEEEECCCCCC---ccHHHHHHHHHCcCHHH---H
Confidence 999999999996 999999987 44 45999999999872 334433 4467998654 4
Q ss_pred HHHHHHhh
Q 004630 239 IIGHACSR 246 (741)
Q Consensus 239 ii~~a~~r 246 (741)
++..++..
T Consensus 298 ~i~~~lG~ 305 (887)
T PRK02186 298 VIDLHLGV 305 (887)
T ss_pred HHHHhCCC
Confidence 44445444
No 105
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.72 E-value=6.9e-17 Score=161.93 Aligned_cols=174 Identities=22% Similarity=0.319 Sum_probs=91.7
Q ss_pred hhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHH
Q 004630 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541 (741)
Q Consensus 462 ~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~ 541 (741)
+.||..+.++ |+++|||+|++..+.+.+ .+.++.++++++|+|+||..++++.||.++++.+++....+
T Consensus 1 a~dK~~~~~~---l~~~gipvP~t~~~~~~~--------~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 1 AEDKLLTLQL---LAKAGIPVPETRVTNSPE--------EAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLD 69 (190)
T ss_dssp -HBHHHHHHH---HHHTT-----EEEESSHH--------HHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH
T ss_pred CCCHHHHHHH---HHHCCcCCCCEEEECCHH--------HHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHH
Confidence 4699999998 999999999999987543 23344555524999999999999999999999999875332
Q ss_pred HHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCcee
Q 004630 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 621 (741)
Q Consensus 542 al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~ 621 (741)
.+. .. ...+++|+||+.. .| +++.|.|++++
T Consensus 70 ~~~---~~-------------------~~~~~~Q~fI~~~------------------~g----~d~Rv~Vig~~----- 100 (190)
T PF08443_consen 70 AFK---RL-------------------ENPILVQEFIPKD------------------GG----RDLRVYVIGGK----- 100 (190)
T ss_dssp ---------------------------TTT-EEEE----S------------------S-------EEEEEETTE-----
T ss_pred HHH---hc-------------------cCcceEeccccCC------------------CC----cEEEEEEECCE-----
Confidence 221 11 4678999999864 01 48999999865
Q ss_pred cCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecC
Q 004630 622 LMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVN 701 (741)
Q Consensus 622 ~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEIN 701 (741)
+...++..... -+|+..+..|.. ..|.. ++ ++++++|.+++++||+. ++.||++-+ ++++||+|||
T Consensus 101 vv~a~~r~~~~--~d~r~n~~~g~~--~~~~~---l~----~e~~~~a~~~~~~lgl~-~~giDi~~~--~~~~~v~EvN 166 (190)
T PF08443_consen 101 VVGAYRRSSPE--GDFRTNLSRGGK--VEPYD---LP----EEIKELALKAARALGLD-FAGIDILDT--NDGPYVLEVN 166 (190)
T ss_dssp EEEEEE----------------------EE-----------HHHHHHHHHHHHHTT-S-EEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEEEEecCc--ccchhhhccCce--EEEec---CC----HHHHHHHHHHHHHhCCC-EEEEEEEec--CCCeEEEEec
Confidence 23333322222 134433333332 22322 23 56788999999999985 999996554 4679999999
Q ss_pred CCCCCCCC
Q 004630 702 TVPGMTPS 709 (741)
Q Consensus 702 t~Pg~t~~ 709 (741)
+.||+...
T Consensus 167 ~~~~~~~~ 174 (190)
T PF08443_consen 167 PNPGFRGI 174 (190)
T ss_dssp TT---TTH
T ss_pred CCchHhHH
Confidence 99998865
No 106
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.72 E-value=1.4e-16 Score=185.78 Aligned_cols=199 Identities=21% Similarity=0.166 Sum_probs=129.3
Q ss_pred CHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCcc
Q 004630 455 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAE 534 (741)
Q Consensus 455 ~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~ 534 (741)
+..+..+|+||..||++ |+++|||||++..+...+ +... ....++++|+||||.++++|+||+++.+..
T Consensus 466 S~ia~~i~~DK~~TK~i---L~~aGIPVP~g~~~~~~~-------~a~~-~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~ 534 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKV---LAEAGFRVPFGDEFSSQA-------LALE-AFSLFENKAIVVKPKSTNYGLGITIFKNGF 534 (737)
T ss_pred cHHHHHHhcCHHHHHHH---HHHcCcCCCCEEEECCHH-------HHHH-HHHHhcCCCEEEeeCCCCCcCCeEEecCcC
Confidence 34456899999999999 999999999999886532 1112 223443589999999999999999998865
Q ss_pred chHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEc
Q 004630 535 DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIG 614 (741)
Q Consensus 535 eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~ 614 (741)
+.+++.+|+..++++ +..+|||+||+|+ |++|.|++
T Consensus 535 ~~eel~~Al~~A~~~-------------------~~~VLVEefI~G~-------------------------EyRv~VIg 570 (737)
T TIGR01435 535 TLEDFQEALNIAFSE-------------------DSSVIIEEFLPGT-------------------------EYRFFVLN 570 (737)
T ss_pred CHHHHHHHHHHHHhc-------------------CCeEEEEecccCC-------------------------EEEEEEEC
Confidence 666666788888765 5789999999998 66666665
Q ss_pred CCCCc--eecCceEEE------------ccC----C---------------------ccccccccccCCCceEE------
Q 004630 615 KCGSM--HSLMPSVTV------------KES----G---------------------DILSLEEKFQGGTGINL------ 649 (741)
Q Consensus 615 ~~~~~--~~~~~~~~i------------~~~----~---------------------~~~d~~~ky~~g~~~~~------ 649 (741)
++--. .-.++.+.= +.. + .-|+++.--..|....+
T Consensus 571 ~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNl 650 (737)
T TIGR01435 571 DKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNV 650 (737)
T ss_pred CeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcc
Confidence 42000 001111100 000 0 00000000000100000
Q ss_pred -cCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCC-------CcEEEEecCCCCCCCCC
Q 004630 650 -TPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-------GEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 650 -~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~-------g~~~viEINt~Pg~t~~ 709 (741)
+-....++++++....+++|.++++++|+. ++.||+++..-+ ....|||+|..|||..+
T Consensus 651 stGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH 717 (737)
T TIGR01435 651 STGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMH 717 (737)
T ss_pred cCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCCccccccceEEEEEcCCcchhhh
Confidence 000011356788889999999999999997 999999986311 12568999999999876
No 107
>PRK06849 hypothetical protein; Provisional
Probab=99.71 E-value=1.8e-16 Score=176.52 Aligned_cols=202 Identities=14% Similarity=0.079 Sum_probs=136.9
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
+.+|+++|..... .........|+. ++...+++..+...+.||..++++ ++++|||+|+++.+...+
T Consensus 75 ~~id~vIP~~e~~-~~~a~~~~~l~~-~~~v~~~~~~~~~~~~DK~~~~~~---~~~~GipvP~t~~v~~~~-------- 141 (389)
T PRK06849 75 ENIDLLIPTCEEV-FYLSHAKEELSA-YCEVLHFDFELLLLLHNKWEFAEQ---ARSLGLSVPKTYLITDPE-------- 141 (389)
T ss_pred cCCCEEEECChHH-HhHHhhhhhhcC-CcEEEcCCHHHHHHhhCHHHHHHH---HHHcCCCCCCEEEeCCHH--------
Confidence 4689999987422 222222333332 355668899999999999999998 999999999999986533
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
.+.++..+..+||+|+||..+++|.|+.++.+.+.+. ... . ....++||||||+|
T Consensus 142 ~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~-------~~~-~-----------------~~~~~~ivQe~I~G 196 (389)
T PRK06849 142 AIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALK-------ELP-I-----------------SKDNPWVMQEFIQG 196 (389)
T ss_pred HHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhc-------ccc-c-----------------CCCCCeEEEEEecC
Confidence 1233333331599999999999999999987733221 110 0 01356999999999
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCcccccccccc--CCCceEEcCCCCCCCC
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQ--GGTGINLTPPPASIMS 658 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~--~g~~~~~~Pa~~~~l~ 658 (741)
. |+++..+..+|....... |...|. ++.+....|..
T Consensus 197 ~-------------------------e~~~~~~~~~G~v~~~~~------------~~~~~~~~~~~~~~~~~~~----- 234 (389)
T PRK06849 197 K-------------------------EYCSYSIVRSGELRAHSC------------YKPEYCAGSGAQIAFQPIN----- 234 (389)
T ss_pred C-------------------------eEEEEEEEECCEEEEEEE------------eeccccCCCCceeEeEECC-----
Confidence 7 777765555554322110 111111 22222223321
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCC
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~ 706 (741)
.++|++.+++++++||+.|.+.+||++++ +|++|++||||+++-
T Consensus 235 ---~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g~~~~iEiNpR~~~ 278 (389)
T PRK06849 235 ---HPRIEEFVTHFVKELNYTGQISFDFIETE-NGDAYPIECNPRTTS 278 (389)
T ss_pred ---cHHHHHHHHHHHHhcCceeEEEEEEEECC-CCCEEEEEecCCCCc
Confidence 24788999999999999999999999984 799999999998763
No 108
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.71 E-value=1.1e-15 Score=165.97 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=142.5
Q ss_pred EEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHH
Q 004630 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 506 (741)
Q Consensus 427 f~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~ 506 (741)
+.+.||..-.=-....+ +.+++|+.| +..+..+++||..++++ |+++|||+|+++ ...
T Consensus 88 iiIp~gs~v~y~~~d~l-~~~~~p~~g-n~~~l~~e~dK~~~k~~---L~~aGIp~p~~~--~~~--------------- 145 (358)
T PRK13278 88 ILIPHGSFVAYLGLENV-EKFKVPMFG-NREILRWEADRDKERKL---LEEAGIRIPRKY--ESP--------------- 145 (358)
T ss_pred EEEeCCCcceeecHHHH-HHCCCCcCC-CHHHHHHhcCHHHHHHH---HHHcCCCCCCEe--CCH---------------
Confidence 44556665532234444 489999777 67799999999999998 999999999963 211
Q ss_pred hhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhc
Q 004630 507 SKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFS 586 (741)
Q Consensus 507 ~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~ 586 (741)
+++ .||+||||..+.+|+|+.++++.+|+.+ +++.+.+. +.++ ....++|||||.|.
T Consensus 146 ~~i-~~PvIVKp~~g~ggkGv~i~~s~~El~~---~~~~l~~~---~~~~-----------~~~~~iIEEfI~G~----- 202 (358)
T PRK13278 146 EDI-DRPVIVKLPGAKGGRGYFIAKSPEEFKE---KIDKLIER---GLIT-----------EVEEAIIQEYVVGV----- 202 (358)
T ss_pred HHc-CCCEEEEeCCCCCCCCeEEeCCHHHHHH---HHHHHHhc---cccC-----------CCCeEEEEecCCCc-----
Confidence 135 5899999999999999999999999874 55544321 0000 14789999999997
Q ss_pred ccccccchhhhhhcCCCceeEEEEEEEcC--CCCceecCceEEEccC-Cccccccccc----c--C-CCceEEcCCCCCC
Q 004630 587 SQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKES-GDILSLEEKF----Q--G-GTGINLTPPPASI 656 (741)
Q Consensus 587 ~~~~~~~~~~~~~~g~~~~~Eisv~vl~~--~~~~~~~~~~~~i~~~-~~~~d~~~ky----~--~-g~~~~~~Pa~~~~ 656 (741)
|+++..+.. ++....+....++... ...+..-++- . + -......|+.
T Consensus 203 --------------------e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~--- 259 (358)
T PRK13278 203 --------------------PYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPVV--- 259 (358)
T ss_pred --------------------EEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceecc---
Confidence 777776653 2332222222222211 1122211110 0 0 0001135654
Q ss_pred CCHHHHHHHHHHHHHHHHH----c--CCcceeEEEEEEEcCCCcEEEEecCCCC-CCCC
Q 004630 657 MSTEALDKCKQRIELIANA----L--QLEGFSRIDAFVNVDNGEVLIIEVNTVP-GMTP 708 (741)
Q Consensus 657 l~~e~~~~i~~~a~~~~~a----L--g~~G~~rvDf~v~~~~g~~~viEINt~P-g~t~ 708 (741)
+.+.+..++.+.++++.++ + ++.|..++|+++++ ++++|++|||++. |-|.
T Consensus 260 ~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~~~~V~Eis~R~~ggtn 317 (358)
T PRK13278 260 LRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTD-NLEIVVFEISARIVAGTN 317 (358)
T ss_pred chHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcC-CCCEEEEEEeCcccCCcc
Confidence 5788888898888888887 4 77899999999985 7899999999987 6443
No 109
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.70 E-value=2.9e-16 Score=176.74 Aligned_cols=195 Identities=18% Similarity=0.197 Sum_probs=127.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCcc-EEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhC---CCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG---IDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P-~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~---~~~ 76 (741)
|+++|||+|+|..+.+.+ ++.+++++++ || +|+||..+++|+||.++++.+|+.+++.+++... ...
T Consensus 112 l~~~gIp~p~~~~~~~~~----~~~~~~~~~g-----~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~ 182 (423)
T TIGR00877 112 MKRYGIPTAEYEVFTDPE----EALSYIQEKG-----APAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGE 182 (423)
T ss_pred HHHCCCCCCCeEEECCHH----HHHHHHHhcC-----CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCC
Confidence 468999999999988765 6666666544 59 9999999999999999999999877777665432 235
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~ 155 (741)
.+||||||+| +||+|.++.++ . ....+++.+. .+..++++.+...+. .....|. .+++++.
T Consensus 183 ~~lvEe~i~G-~E~sv~~~~dg--~--~~~~~~~~~~------------~~~~~~~~~~~~~g~-~~~~~p~~~~~~~~~ 244 (423)
T TIGR00877 183 RVVIEEFLDG-EEVSLLAFVDG--K--TVIPMPPAQD------------HKRALEGDKGPNTGG-MGAYSPAPVFTEEVE 244 (423)
T ss_pred eEEEEECccC-ceEEEEEEEcC--C--eEEeceeeee------------eeecccCCCCCCCCC-CceecCCCCCCHHHH
Confidence 7999999998 99999999743 1 1222233221 112333333333232 3345555 3666655
Q ss_pred HHH-HHHHH---HHHHHhC--CCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcC
Q 004630 156 NSI-REGAS---LLFQRLG--LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVG 229 (741)
Q Consensus 156 ~~i-~~~a~---~~~~aLg--~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G 229 (741)
.++ .+++. +++.++| +.|+.++||++ +++| +||+|||||+|-...... + ...+
T Consensus 245 ~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~-----------------t~~g-~~viEin~R~g~~~~~~~--~-~~~~ 303 (423)
T TIGR00877 245 KRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML-----------------TKEG-PKVLEFNCRFGDPETQAV--L-PLLK 303 (423)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE-----------------ECCC-cEEEEEEccCCCccceeE--e-cccC
Confidence 443 33444 4445554 57999999997 5667 999999999985433221 1 2234
Q ss_pred CCHHHHHHHHHHHHHhh
Q 004630 230 FSHSNILRTIIGHACSR 246 (741)
Q Consensus 230 ~~~~~ll~~ii~~a~~r 246 (741)
. ++.+.++..+...
T Consensus 304 ~---dl~~~~~~~~~g~ 317 (423)
T TIGR00877 304 S---DLLEVCLAAVEGK 317 (423)
T ss_pred C---CHHHHHHHHHcCC
Confidence 4 5555555555543
No 110
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.69 E-value=7.8e-16 Score=182.27 Aligned_cols=198 Identities=22% Similarity=0.172 Sum_probs=130.4
Q ss_pred ccCCCHHHHHHhh-ChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE
Q 004630 451 YTGPGVMASKTCM-DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR 529 (741)
Q Consensus 451 yvG~~~~asal~~-DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~ 529 (741)
+++.++..+..++ ||..||++ |+++|||+|++..+...+ +....+...+ +||+||||.++++|+||++
T Consensus 474 ~t~~~s~~s~~~~~DK~~tk~l---L~~~GIpvP~~~~~~~~e-------~a~~~~~~~~-g~PvVVKP~~g~~G~GV~~ 542 (752)
T PRK02471 474 MTSKDNYISPLIMENKVVTKKI---LAEAGFPVPAGDEFTSLE-------EALADYSLFA-DKAIVVKPKSTNFGLGISI 542 (752)
T ss_pred ccCCCHHHHHHHhhCHHHHHHH---HHHCCcCCCCEEEEcCHH-------HHHHHHHHhc-CCCEEEEECCCCCcCCeEE
Confidence 5677777555555 99999999 999999999998886432 2222222224 6999999999999999999
Q ss_pred eCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEE
Q 004630 530 LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEIT 609 (741)
Q Consensus 530 v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eis 609 (741)
+.+.++..++.+|+..++++ +..+||||||+|+ |++
T Consensus 543 ~~~~~~~eel~~A~~~a~~~-------------------~~~vlVEEfI~G~-------------------------E~R 578 (752)
T PRK02471 543 FKEPASLEDYEKALEIAFRE-------------------DSSVLVEEFIVGT-------------------------EYR 578 (752)
T ss_pred ecCcCCHHHHHHHHHHHHhc-------------------CCcEEEEecccCC-------------------------EEE
Confidence 88777777777788887765 5789999999998 666
Q ss_pred EEEEcCCCCceecCceEEEcc----CCcc-----------------------------------------ccccccccCC
Q 004630 610 VGVIGKCGSMHSLMPSVTVKE----SGDI-----------------------------------------LSLEEKFQGG 644 (741)
Q Consensus 610 v~vl~~~~~~~~~~~~~~i~~----~~~~-----------------------------------------~d~~~ky~~g 644 (741)
|.|++++ . .+.++..+ .++. |+++.--..|
T Consensus 579 v~Viggk--v---vaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~G 653 (752)
T PRK02471 579 FFVLDGK--V---EAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKG 653 (752)
T ss_pred EEEECCE--E---EEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCC
Confidence 6655431 1 00110000 0000 0000000001
Q ss_pred CceEEcC-------CCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcC-----CC--cEEEEecCCCCCCCCC
Q 004630 645 TGINLTP-------PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD-----NG--EVLIIEVNTVPGMTPS 709 (741)
Q Consensus 645 ~~~~~~P-------a~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~-----~g--~~~viEINt~Pg~t~~ 709 (741)
....+.. ....++++++....+++|.++++++|+. ++.||+++..- .. +..|+|||..||+.-+
T Consensus 654 e~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~-~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 654 EIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAK-ICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred CEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 1111000 0001356778889999999999999987 88899998631 01 5678999999999766
No 111
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.69 E-value=5.6e-16 Score=163.97 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=119.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhC-CCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-IDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~-~~~~vl 79 (741)
|+++|||+|++..+.+.+ ++.++++++ +||+|+||..+++|+||.++++.+++...+..+.... ....+|
T Consensus 96 l~~~gi~~P~t~~~~~~~----~~~~~~~~~-----~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~l 166 (277)
T TIGR00768 96 LAKAGLPQPRTGLAGSPE----EALKLIEEI-----GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFY 166 (277)
T ss_pred HHHCCCCCCCEEEeCCHH----HHHHHHHhc-----CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEE
Confidence 467899999999887654 566666544 4599999999999999999999998755443322111 124799
Q ss_pred EeeccCCC--eEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHH
Q 004630 80 VELFLEGG--SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINS 157 (741)
Q Consensus 80 VEe~i~G~--~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~ 157 (741)
||+||+|. ++++|.+++ ++ ++.. .. +. . .. ++..+...++ ...|..++ ++
T Consensus 167 vQe~I~~~~~~~~rv~v~~----~~--~~~~--~~-r~-~--------~~---~~~~n~~~g~---~~~~~~l~----~~ 218 (277)
T TIGR00768 167 VQEYIKKPGGRDIRVFVVG----DE--VIAA--IY-RI-T--------SG---HWRTNLARGG---KAEPCPLT----EE 218 (277)
T ss_pred EEeeecCCCCceEEEEEEC----CE--EEEE--EE-Ec-C--------CC---chhhhhhcCC---eeeecCCC----HH
Confidence 99999951 577777763 21 1210 11 10 0 01 1112222222 22344454 45
Q ss_pred HHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHH
Q 004630 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237 (741)
Q Consensus 158 i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~ 237 (741)
++++|.+++++||+ +++++||++ +++|++||+|+|++||+... ...+|++..+++.
T Consensus 219 ~~~~a~~~~~~l~~-~~~~vD~~~-----------------~~~g~~~viEiN~~p~~~~~------~~~~g~~l~~~~~ 274 (277)
T TIGR00768 219 IEELAIKAAKALGL-DVVGIDLLE-----------------SEDRGLLVNEVNPNPEFKNS------VKTTGVNIAGKLL 274 (277)
T ss_pred HHHHHHHHHHHhCC-CeEEEEEEE-----------------cCCCCeEEEEEcCCcchhhh------HHHHCCCHHHHHH
Confidence 78899999999998 799999987 56789999999999996542 3567999887765
Q ss_pred H
Q 004630 238 T 238 (741)
Q Consensus 238 ~ 238 (741)
.
T Consensus 275 ~ 275 (277)
T TIGR00768 275 D 275 (277)
T ss_pred h
Confidence 4
No 112
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.68 E-value=2.5e-16 Score=155.85 Aligned_cols=169 Identities=21% Similarity=0.226 Sum_probs=116.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccE-EEecCCCCCCcceEEeCCHHHHHHHHHHhHhh-C---CC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKV-VVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE-G---ID 75 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~-VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~-~---~~ 75 (741)
|+++|||||+|..+++.+ ++.+++++.+. |+ ||||....+++||.+++|.+|+.+++.+++.. . ..
T Consensus 10 m~~~~IPTa~~~~f~~~~----~A~~~l~~~~~-----p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~ 80 (194)
T PF01071_consen 10 MKRYGIPTAKYKVFTDYE----EALEYLEEQGY-----PYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAG 80 (194)
T ss_dssp HHHTT-SB--EEEESSHH----HHHHHHHHHSS-----SEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCG
T ss_pred HHHcCCCCCCeeEECCHH----HHHHHHHhcCC-----CceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCC
Confidence 578999999999999766 66677766555 88 99999999999999999999999999988852 1 24
Q ss_pred CeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHH
Q 004630 76 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVV 154 (741)
Q Consensus 76 ~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~ 154 (741)
..+|||||+.| +|+|+.++.++. . .+.+++.+- .++.++-+...+.++ +...+|.+ +++++
T Consensus 81 ~~vvIEE~l~G-~E~S~~a~~dG~--~--~~~lp~aqD------------~Kr~~dgd~GpnTGG-MGa~sp~p~~~~~~ 142 (194)
T PF01071_consen 81 SKVVIEEFLEG-EEVSLFALTDGK--N--FVPLPPAQD------------HKRLFDGDTGPNTGG-MGAYSPVPFITDEL 142 (194)
T ss_dssp SSEEEEE---S-EEEEEEEEEESS--E--EEEEEEBEE------------EEEEETTTEEEEESE-SEEEESTTTS-HHH
T ss_pred CcEEEEeccCC-eEEEEEEEEcCC--e--EEECcchhc------------cccccCCCCCCCCCC-ccceeecccCCHHH
Confidence 68999999998 999999998643 2 233333211 233444444444455 44555554 58888
Q ss_pred HHHHHH-HHHHHHHHh-----CCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCC
Q 004630 155 INSIRE-GASLLFQRL-----GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214 (741)
Q Consensus 155 ~~~i~~-~a~~~~~aL-----g~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pg 214 (741)
.+++.+ +...++++| .++|+..+++.+ +.+| |+|||.|.|.|
T Consensus 143 ~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMl-----------------t~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 143 LEEIIEEILEPTLKGLKKEGIPYRGVLYAGLML-----------------TEDG-PKVLEFNVRFG 190 (194)
T ss_dssp HHHHHHHTHHHHHHHHHHTT---EEEEEEEEEE-----------------ETTE-EEEEEEESSGS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEE-----------------eCCC-cEEEEEeCCCC
Confidence 877765 677777776 445666666655 6777 99999999876
No 113
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.68 E-value=1.2e-16 Score=155.93 Aligned_cols=157 Identities=22% Similarity=0.367 Sum_probs=85.5
Q ss_pred hhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHH
Q 004630 462 CMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVK 541 (741)
Q Consensus 462 ~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~ 541 (741)
|.||..|.++ |+++|||+|......... .. .+|+|+||.++.||.||.++++.+++...
T Consensus 1 ~~dK~~~~~~---L~~~gi~~P~~~~~~~~~---------------~~-~~~~viKp~~G~Gg~~i~~~~~~~~~~~~-- 59 (161)
T PF02655_consen 1 CSDKLKTYKF---LKELGIPVPTTLRDSEPE---------------PI-DGPWVIKPRDGAGGEGIRIVDSEDELEEF-- 59 (161)
T ss_dssp -TSHHHHHHH---HTTT-S--------EESS------------------SSSEEEEESS-------B--SS--TTE----
T ss_pred CCCHHHHHHH---HHccCCCCCCcccccccc---------------cc-CCcEEEEeCCCCCCCCeEEECCchhhccc--
Confidence 6899999998 999999999333222111 12 58999999999999999999998887631
Q ss_pred HHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCcee
Q 004630 542 ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHS 621 (741)
Q Consensus 542 al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~ 621 (741)
+ ....++||||+|. ++++.++.+.+....
T Consensus 60 -~-------------------------~~~~i~Qe~i~G~-------------------------~~Sv~~l~~~~~~~~ 88 (161)
T PF02655_consen 60 -L-------------------------NKLRIVQEFIEGE-------------------------PYSVSFLASGGGARL 88 (161)
T ss_dssp -------------------------------EEEE---SE-------------------------EEEEEEEE-SSSEEE
T ss_pred -c-------------------------ccceEEeeeeCCE-------------------------EeEEEEEEeCCceEE
Confidence 1 1223999999996 999999987765443
Q ss_pred cCceEE-EccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHc-CCcceeEEEEEEEcCCCcEEEEe
Q 004630 622 LMPSVT-VKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL-QLEGFSRIDAFVNVDNGEVLIIE 699 (741)
Q Consensus 622 ~~~~~~-i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL-g~~G~~rvDf~v~~~~g~~~viE 699 (741)
+..... +.....-| .|.++ ..|.. ....+++.+++++++++| |+.|+..|||+++ ++++|++|
T Consensus 89 l~~~rq~i~~~~~~~----~~~G~----~~~~~-----~~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~--~~~~~viE 153 (161)
T PF02655_consen 89 LGVNRQLIGNDDGRF----RYCGG----IVPAD-----TPLKEEIIELARRIAEALPGLRGYVGIDFILD--DGGPYVIE 153 (161)
T ss_dssp EEEEEEEEET----T----EEEEE----EES---------HHHHHHHHHHHHHTTSTT--EEEEEEEEES--S-SEEEEE
T ss_pred EEechHhhcccccee----eeccc----ccccC-----CchHHHHHHHHHHHHHHcCCCeeeEeEEEEEe--CCcEEEEE
Confidence 322222 21111112 23332 45543 234789999999999999 9999999999998 47899999
Q ss_pred cCCCCC
Q 004630 700 VNTVPG 705 (741)
Q Consensus 700 INt~Pg 705 (741)
|||+++
T Consensus 154 INPR~t 159 (161)
T PF02655_consen 154 INPRFT 159 (161)
T ss_dssp EESS--
T ss_pred EcCCCC
Confidence 999876
No 114
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.68 E-value=2.2e-15 Score=161.85 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=163.7
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhh
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVD 500 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~ 500 (741)
..+|++|+-=- .+=.. .|-..|+..|||..|++..++.+-.+|.++|++ |+++||||+.|..+++.+
T Consensus 62 ~~idl~vVGPE-~pL~~-GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~f---m~k~~IPta~y~~f~~~e-------- 128 (428)
T COG0151 62 KNVDLVVVGPE-APLVA-GVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDF---MKKYGIPTAEYEVFTDPE-------- 128 (428)
T ss_pred cCCCEEEECCc-HHHhh-hhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHH---HHHcCCCcccccccCCHH--------
Confidence 45677765210 00011 456889999999999999999999999999999 999999999999987432
Q ss_pred HHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 501 IWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 501 ~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
.......+. +.|+||||....+++||.++.+.++.. +++.+.+.. +.++ .....++||||++|
T Consensus 129 ~a~ayi~~~-g~piVVKadGLaaGKGV~V~~~~eeA~---~a~~~~l~~---~~fg----------~~g~~VVIEEfL~G 191 (428)
T COG0151 129 EAKAYIDEK-GAPIVVKADGLAAGKGVIVAMTLEEAE---AAVDEMLEG---NAFG----------SAGARVVIEEFLDG 191 (428)
T ss_pred HHHHHHHHc-CCCEEEecccccCCCCeEEcCCHHHHH---HHHHHHHhh---cccc----------CCCCcEEEEecccc
Confidence 234456677 699999999999999999998866655 455554432 1111 01367999999999
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHH
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e 660 (741)
. |+|+.++.++.....+++.. .....|+-+.--+.|.+..+.|+|. ++++
T Consensus 192 e-------------------------E~S~~a~~DG~~v~p~p~aQ---DhKra~dgD~GPNTGGMGaysp~P~--~t~e 241 (428)
T COG0151 192 E-------------------------EFSLQAFVDGKTVIPMPTAQ---DHKRAYDGDTGPNTGGMGAYSPAPF--ITDE 241 (428)
T ss_pred e-------------------------EEEEEEEEcCCeEEECcccc---ccccccCCCCCCCCCCCCCCCCCCC--CCHH
Confidence 7 99999999876665555432 2233555554455566667888875 7899
Q ss_pred HHHHHH-HHHHHHHHHcC-----CcceeEEEEEEEcCCCcEEEEecCCCCC
Q 004630 661 ALDKCK-QRIELIANALQ-----LEGFSRIDAFVNVDNGEVLIIEVNTVPG 705 (741)
Q Consensus 661 ~~~~i~-~~a~~~~~aLg-----~~G~~rvDf~v~~~~g~~~viEINt~Pg 705 (741)
+.+++. ++.+...++|- ++|+....|+++. +| ++|||.|.+=|
T Consensus 242 ~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~-~G-PkViEfN~RFG 290 (428)
T COG0151 242 VVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTA-DG-PKVIEFNARFG 290 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcC-CC-cEEEEEecccC
Confidence 888877 67777766662 5688999999996 56 99999998755
No 115
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.67 E-value=9e-16 Score=172.53 Aligned_cols=193 Identities=14% Similarity=0.080 Sum_probs=125.6
Q ss_pred CccCCCCCCCeE-EEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeC----CHHHHHHHHHHhHhhCCC
Q 004630 1 MSKQGFITVPSF-LLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY----GVIDSLKKAKGIILEGID 75 (741)
Q Consensus 1 l~~~GIp~p~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~----~~~e~~~~~~~~~~~~~~ 75 (741)
|+++|||||+.+ ...+.+ ++..++.+ .+||+||||..+++|+||.+++ +.++++..+.+.+ +.+
T Consensus 113 l~~~gIptp~~~~~~~~~~----e~~~~~~~-----~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~--~~~ 181 (435)
T PRK06395 113 MERHNIPGNINFNACFSEK----DAARDYIT-----SMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL--DRD 181 (435)
T ss_pred HHHCCcCCCcccceeCChH----HHHHHHHh-----hCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh--CCC
Confidence 468999998654 444433 44444433 3569999999999999999994 4455555555543 235
Q ss_pred CeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEE----cCCCCC
Q 004630 76 DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH----TPPRFP 151 (741)
Q Consensus 76 ~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~----~P~~~~ 151 (741)
..+||||||.| .||||.++.++ .. ...+++.+- .++.++.+.....+++..+. .++.++
T Consensus 182 ~~viIEEfl~G-~E~Svd~~~dg--~~--~~~l~~~~d------------~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~ 244 (435)
T PRK06395 182 GVVLIEKKMTG-EEFSLQAFSDG--KH--LSFMPIVQD------------YKRAYEGDHGPNTGGMGSISDRDFSLPFLS 244 (435)
T ss_pred CcEEEEeecCC-ceEEEEEEEcC--Ce--EEEecccce------------eeecccCCCCCccCCCccccCCCCCCCCCC
Confidence 68999999998 99999999743 22 233333221 11222222222233322232 233489
Q ss_pred HHHHHHHHHHHHHHHHHhCC-----CCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChH-HHHH
Q 004630 152 IVVINSIREGASLLFQRLGL-----CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL-FQQA 225 (741)
Q Consensus 152 ~~~~~~i~~~a~~~~~aLg~-----~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~-~~~~ 225 (741)
+++.+++++++.+++++|+. +|+..+++++ +++| |||+|+|+|+|=..+..+ +.+
T Consensus 245 ~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~l-----------------t~~g-p~ViE~n~R~gdpe~~~il~~l- 305 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMD-----------------TPNG-VKVIEINARFADPEGINVLYLL- 305 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEE-----------------eCCC-cEEEEEeCCCCCccHHhhhhhc-
Confidence 99999999999999999995 5666788876 5556 999999999984333222 222
Q ss_pred HHcCCCHHHHHHHHHHHHHhh
Q 004630 226 SKVGFSHSNILRTIIGHACSR 246 (741)
Q Consensus 226 ~~~G~~~~~ll~~ii~~a~~r 246 (741)
+ .+|+..++..+.++
T Consensus 306 ---~---~d~~~~~~~~~~g~ 320 (435)
T PRK06395 306 ---K---SDFVETLHQIYSGN 320 (435)
T ss_pred ---c---cCHHHHHHHHhcCC
Confidence 3 46677777777654
No 116
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.65 E-value=3.1e-15 Score=162.49 Aligned_cols=172 Identities=19% Similarity=0.172 Sum_probs=119.2
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|++..+.+.+ ++.+... ....+||+|+||..+++|+||.+++|.+|+...+.+ ...+||
T Consensus 119 l~~~gip~p~~~~~~~~~----~~~~~~~---~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~------~~~~lv 185 (326)
T PRK12767 119 LKENGIPTPKSYLPESLE----DFKAALA---KGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY------VPNLII 185 (326)
T ss_pred HHHcCCCCCCEEcccCHH----HHHhhhh---cccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh------CCCeEE
Confidence 467999999998876654 4443110 024567999999999999999999999997665543 238999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCe-EEEcCCCCCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV-AYHTPPRFPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~P~~~~~~~~~~i~ 159 (741)
||||.| +|+++.++.+.+| .++.+...+. + . ...+... ....+ .++++
T Consensus 186 qeyi~G-~e~~v~~~~~~~G---~~~~~~~~~~---------------~-~----~~~g~~~~~~~~~-------~~~i~ 234 (326)
T PRK12767 186 QEFIEG-QEYTVDVLCDLNG---EVISIVPRKR---------------I-E----VRAGETSKGVTVK-------DPELF 234 (326)
T ss_pred EeccCC-ceEEEEEEEcCCC---CEEEEEEeee---------------e-e----ecCCceeEEEEcC-------CHHHH
Confidence 999998 9999999975322 2333222111 0 0 0011101 11111 25788
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
+++.+++++||+.|.+++||++ ++ |++||+|+|||++-+ .. +...+|+|+.+++..+
T Consensus 235 ~~~~~i~~~lg~~G~~~vd~~~-----------------~~-g~~~viEiNpR~~g~--~~---~~~~~G~n~~~~~~~~ 291 (326)
T PRK12767 235 KLAERLAEALGARGPLNIQCFV-----------------TD-GEPYLFEINPRFGGG--YP---LSYMAGANEPDWIIRN 291 (326)
T ss_pred HHHHHHHHhcCCeeeEEEEEEE-----------------EC-CeEEEEEEeCCCCCc--ch---hhHhhCCCHHHHHHHH
Confidence 9999999999999999999987 33 789999999988732 21 3456899988776554
No 117
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.65 E-value=1.6e-15 Score=170.04 Aligned_cols=237 Identities=19% Similarity=0.188 Sum_probs=171.1
Q ss_pred ccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh---C-CCCe
Q 004630 2 SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---G-IDDR 77 (741)
Q Consensus 2 ~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~---~-~~~~ 77 (741)
.++|+|+-|...-... ..+++.+++++.| ||++||...||+++|+.++++.+++.+.+.++-.+ . .++.
T Consensus 130 ~~agvPvipgt~~~~~--~~ee~~~fa~~~g-----yPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~e 202 (1149)
T COG1038 130 IKAGVPVIPGTDGPIE--TIEEALEFAEEYG-----YPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDE 202 (1149)
T ss_pred HHcCCCccCCCCCCcc--cHHHHHHHHHhcC-----CcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3689998776432221 2457777776555 59999999999999999999999876554433211 1 2578
Q ss_pred EEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHHH
Q 004630 78 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVIN 156 (741)
Q Consensus 78 vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~~ 156 (741)
+.||+||...+++.|.++++..|+ ++.+ .+ +-|+.+.+.+. .-...|+ .+++++++
T Consensus 203 VyvEk~ve~pkHIEVQiLgD~~Gn----vvHL---fE-------------RDCSvQRRhQK---VVE~APa~~L~~~~R~ 259 (1149)
T COG1038 203 VYVEKLVENPKHIEVQILGDTHGN----VVHL---FE-------------RDCSVQRRHQK---VVEVAPAPYLSPELRD 259 (1149)
T ss_pred EEhhhhhcCcceeEEEEeecCCCC----EEEE---ee-------------cccchhhccce---eEEecCCCCCCHHHHH
Confidence 999999988899999999876654 2211 01 12343333332 2344555 48999999
Q ss_pred HHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHH
Q 004630 157 SIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNIL 236 (741)
Q Consensus 157 ~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll 236 (741)
+|++.|.++++..|+.+.+.++|++ +.+|+.||||||||-....+= ...-+|+ |++
T Consensus 260 ~ic~~Avkla~~~~Y~~AGTvEFLv-----------------d~~~~fyFIEvNPRiQVEHTi----TE~vTgi---DIV 315 (1149)
T COG1038 260 EICDDAVKLARNIGYINAGTVEFLV-----------------DEDGKFYFIEVNPRIQVEHTI----TEEITGI---DIV 315 (1149)
T ss_pred HHHHHHHHHHHHcCCcccceEEEEE-----------------cCCCcEEEEEecCceeeEEee----eeeeech---hHH
Confidence 9999999999999999999999998 578899999999998876521 1233576 677
Q ss_pred HHHHHHHHhhC--------CCCCCCCCccccCCCCCCCCCCccccccccCceEEEEEecCCccc
Q 004630 237 RTIIGHACSRF--------PNLASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSE 292 (741)
Q Consensus 237 ~~ii~~a~~r~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S~E 292 (741)
...|..|-.-- +..+...-.+++|++||.-+||..+|.|-+||+.+.==.||..--
T Consensus 316 ~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~PDtGrI~aYRs~gGfGVR 379 (1149)
T COG1038 316 KAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIPDTGRITAYRSAGGFGVR 379 (1149)
T ss_pred HHHHHHhccCccCCcccCCCccccccccceEEEEEeeccCcccCCCCCCceEEEEecCCCceEE
Confidence 77766663321 111223334799999999999999999999999988888877643
No 118
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=8.3e-15 Score=157.37 Aligned_cols=214 Identities=18% Similarity=0.244 Sum_probs=144.7
Q ss_pred CccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhH
Q 004630 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDI 501 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~ 501 (741)
..|++|+-.-...----.+-..+|..|++.+ +++.+...|.||.++.++ |..+|+|+|++..+.+.+ +.
T Consensus 78 ~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~---l~~~~ipvP~T~i~~~~~-------~~ 146 (318)
T COG0189 78 ELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQL---LAKAGIPVPPTLITRDPD-------EA 146 (318)
T ss_pred cCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHH---HHhcCCCCCCEEEEcCHH-------HH
Confidence 4688887653321111234568899999887 567999999999999998 999999999999887642 23
Q ss_pred HHHHHhhcCCCcEEEecCCCCCCcceEEeCCcc-chHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 502 WHELTSKLQCKTLCVKPARDGCSTGVARLCCAE-DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 502 ~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~-eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
...+.+.+ +||+|+||.+|++|.||.++++.+ ++.. .++..... ....+++|+||+-
T Consensus 147 ~~~~~~~~-g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~---~~e~~~~~------------------~~~~~ivQeyi~~ 204 (318)
T COG0189 147 AEFVAEHL-GFPVVLKPLDGSGGRGVFLVEDADPELLS---LLETLTQE------------------GRKLIIVQEYIPK 204 (318)
T ss_pred HHHHHHhc-CCCEEEeeCCCCCccceEEecCCChhHHH---HHHHHhcc------------------ccceEehhhhcCc
Confidence 34455667 699999999999999999999999 7764 33333221 1246999999986
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceE-EEccCCccccccccccCCCceEEcCCCCCCCCH
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLEEKFQGGTGINLTPPPASIMST 659 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~-~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~ 659 (741)
.. ++...-+++++ .+.+.. .+ ++...+ +++..+..|... .|..
T Consensus 205 ~~-----------------------~~~rrivv~~~-~~~~~y-~~~R~~~~~---~~R~N~a~Gg~~--e~~~------ 248 (318)
T COG0189 205 AK-----------------------RDDRRVLVGGG-EVVAIY-ALARIPASG---DFRSNLARGGRA--EPCE------ 248 (318)
T ss_pred cc-----------------------CCcEEEEEeCC-EEeEEe-eeccccCCC---Cceeeccccccc--cccC------
Confidence 40 13344444433 111110 22 222233 344444444332 2222
Q ss_pred HHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCC
Q 004630 660 EALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708 (741)
Q Consensus 660 e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~ 708 (741)
+.++++++|.+++.+||+ +++.||++.+ ++..||+|||..|++-.
T Consensus 249 -l~~e~~elA~kaa~~lGl-~~~GVDiie~--~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 249 -LTEEEEELAVKAAPALGL-GLVGVDIIED--KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred -CCHHHHHHHHHHHHHhCC-eEEEEEEEec--CCCcEEEEEeCCCcccc
Confidence 235778999999999986 5999999988 35699999999996544
No 119
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.65 E-value=3.8e-15 Score=171.73 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=126.6
Q ss_pred CHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE-eCCc
Q 004630 455 GVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR-LCCA 533 (741)
Q Consensus 455 ~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~-v~~~ 533 (741)
++.+..+|.||..||++ |+++|||+|++..+...+ .+.++.+++ + |+||||+.+++|+||++ +++.
T Consensus 288 s~~ai~~~~DK~~tk~l---L~~aGIpVP~~~~~~~~~--------~~~~~~~~~-G-~vVVKP~~G~~G~Gv~v~v~~~ 354 (547)
T TIGR03103 288 SAVAMSLCDDKRLTRRL---VSEAGLQVPEQQLAGNGE--------AVEAFLAEH-G-AVVVKPVRGEQGKGISVDVRTP 354 (547)
T ss_pred CHHHHHHhcCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHh-C-CEEEEECCCCCCcCeEEecCCH
Confidence 67899999999999998 999999999999876432 234455677 4 79999999999999997 8888
Q ss_pred cchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeE--EEEE
Q 004630 534 EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVE--ITVG 611 (741)
Q Consensus 534 ~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~E--isv~ 611 (741)
++|. ++++.+..+ +..++||+||+|.++++. +++|.+-.-- ....
T Consensus 355 ~eL~---~a~~~a~~~-------------------~~~vlvEe~i~G~d~Rv~-----------Vigg~vvaa~~R~~~~ 401 (547)
T TIGR03103 355 DDLE---AAIAKARQF-------------------CDRVLLERYVPGEDLRLV-----------VIDFEVVAAAVRRPPE 401 (547)
T ss_pred HHHH---HHHHHHHhc-------------------CCcEEEEEeccCCeEEEE-----------EECCEEEEEEEecCcE
Confidence 8887 466666554 468999999999844332 1111000000 0112
Q ss_pred EEcCCCCc-eecC------------ceEEEccC--------Cccccc--------------cccccCCCceEEcCCCCCC
Q 004630 612 VIGKCGSM-HSLM------------PSVTVKES--------GDILSL--------------EEKFQGGTGINLTPPPASI 656 (741)
Q Consensus 612 vl~~~~~~-~~~~------------~~~~i~~~--------~~~~d~--------------~~ky~~g~~~~~~Pa~~~~ 656 (741)
|+|++... ..+. +...+.-+ ..-|++ .+....|.. . .+
T Consensus 402 V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~--~-----~d 474 (547)
T TIGR03103 402 VIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGT--I-----HD 474 (547)
T ss_pred EEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCe--e-----Ee
Confidence 22222100 0000 00000000 000111 111111111 1 12
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcC-CCcEEEEecCCCCCCCCC
Q 004630 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVD-NGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 657 l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~-~g~~~viEINt~Pg~t~~ 709 (741)
++.++...++++|.++++++|+. ++.||++++.. .....|+|+|..|||..+
T Consensus 475 vtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 475 VTEQLHPDLREAAERAARALDIP-VVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred cccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 45567788999999999999987 89999998741 234589999999999877
No 120
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.65 E-value=5.8e-15 Score=175.49 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 004630 439 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518 (741)
Q Consensus 439 ~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP 518 (741)
..|...+..+.. +.+..++.+|+||..+|++ |+++|||+|++..+.+.+ .+.+..+++ +||+||||
T Consensus 191 ~~~~~i~~~~~~--~~s~~a~~i~~DK~~tk~l---L~~~GIPvP~~~~v~s~~--------~a~~~a~~i-G~PvVVKP 256 (727)
T PRK14016 191 KYQRRIQAAETD--QTSAIAVDIACDKELTKRL---LAAAGVPVPEGRVVTSAE--------DAWEAAEEI-GYPVVVKP 256 (727)
T ss_pred HHHHHHHHhcCC--CCcHHHHHHhCCHHHHHHH---HHHCCcCCCCeeEeCCHH--------HHHHHHHHc-CCCEEEEE
Confidence 455666766665 6788899999999999998 999999999998776432 233455678 69999999
Q ss_pred CCCCCCcceEE-eCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhh
Q 004630 519 ARDGCSTGVAR-LCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585 (741)
Q Consensus 519 ~~~gsS~GV~~-v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v 585 (741)
..+++|+||++ +++.+++.+ +++.+... ...++||+||+|+++++
T Consensus 257 ~~G~~G~GV~~~v~~~~el~~---a~~~a~~~-------------------~~~viVEe~I~G~d~Rv 302 (727)
T PRK14016 257 LDGNHGRGVTVNITTREEIEA---AYAVASKE-------------------SSDVIVERYIPGKDHRL 302 (727)
T ss_pred CCCCCCCceEEecCCHHHHHH---HHHHHHHh-------------------CCeEEEEEecCCceEEE
Confidence 99999999997 999999885 55555443 46899999999984444
No 121
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.64 E-value=1.1e-14 Score=154.31 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=143.4
Q ss_pred CCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC-CCcceEEeC
Q 004630 453 GPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG-CSTGVARLC 531 (741)
Q Consensus 453 G~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~g-sS~GV~~v~ 531 (741)
-++..+..+..||...|++ |+++|||||+|..+.+.+ .+..+...+ ++|.|+|-+.+| -++|.++++
T Consensus 88 ~p~~~~l~~~qdR~~eK~~---l~~~Gi~va~~~~v~~~~--------el~~~~~~~-g~p~VlKtr~gGYDGkGQ~~i~ 155 (375)
T COG0026 88 FPSPDALRIAQDRLVEKQF---LDKAGLPVAPFQVVDSAE--------ELDAAAADL-GFPAVLKTRRGGYDGKGQWRIR 155 (375)
T ss_pred CCCHHHHHHHhhHHHHHHH---HHHcCCCCCCeEEeCCHH--------HHHHHHHHc-CCceEEEeccccccCCCeEEee
Confidence 4788999999999999999 999999999999997643 345566788 599999999887 589999999
Q ss_pred CccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEE
Q 004630 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVG 611 (741)
Q Consensus 532 ~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~ 611 (741)
+.+++... ...... ....++|+||+-+ +|+|+.
T Consensus 156 ~~~~~~~~---~~~~~~--------------------~~~~vlE~fV~F~------------------------~EiSvi 188 (375)
T COG0026 156 SDADLELR---AAGLAE--------------------GGVPVLEEFVPFE------------------------REISVI 188 (375)
T ss_pred Ccccchhh---Hhhhhc--------------------cCceeEEeecccc------------------------eEEEEE
Confidence 88888731 111111 1334999999986 699998
Q ss_pred EEcC-CCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEc
Q 004630 612 VIGK-CGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV 690 (741)
Q Consensus 612 vl~~-~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~ 690 (741)
+..+ +|...+.++. +.....+++. ..+.|+. ++++++++.+++|.++++.|++.|...|+||++.
T Consensus 189 ~aR~~~G~~~~yP~~-eN~h~~gIl~----------~siaPa~---i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~ 254 (375)
T COG0026 189 VARSNDGEVAFYPVA-ENVHRNGILR----------TSIAPAR---IPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP 254 (375)
T ss_pred EEEcCCCCEEEeccc-ceeeecCEEE----------EEEecCc---CCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEEC
Confidence 8865 4555555443 3333334433 3367886 6889999999999999999999999999999996
Q ss_pred CCCcEEEEecCCCCCCCCC
Q 004630 691 DNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 691 ~~g~~~viEINt~Pg~t~~ 709 (741)
+|++++||+-|+|.=|.+
T Consensus 255 -dg~llvNEiAPRvHNSGH 272 (375)
T COG0026 255 -DGELLVNEIAPRVHNSGH 272 (375)
T ss_pred -CCcEEEeeccCCCCCccc
Confidence 689999999999985554
No 122
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.64 E-value=6.6e-15 Score=145.80 Aligned_cols=182 Identities=18% Similarity=0.198 Sum_probs=125.8
Q ss_pred ChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcE-EEecCCCCCCcceEEeCCccchHHHHHH
Q 004630 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL-CVKPARDGCSTGVARLCCAEDLTVYVKA 542 (741)
Q Consensus 464 DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~Pv-vVKP~~~gsS~GV~~v~~~~eL~~~~~a 542 (741)
+|..+|++ |+++||||++|..+.+.+ ...+..++. .+|+ ||||....+++||.++.+.++.. ++
T Consensus 2 SK~faK~f---m~~~~IPTa~~~~f~~~~--------~A~~~l~~~-~~p~~ViKadGla~GKGV~i~~~~~eA~---~~ 66 (194)
T PF01071_consen 2 SKSFAKEF---MKRYGIPTAKYKVFTDYE--------EALEYLEEQ-GYPYVVIKADGLAAGKGVVIADDREEAL---EA 66 (194)
T ss_dssp BHHHHHHH---HHHTT-SB--EEEESSHH--------HHHHHHHHH-SSSEEEEEESSSCTTTSEEEESSHHHHH---HH
T ss_pred CHHHHHHH---HHHcCCCCCCeeEECCHH--------HHHHHHHhc-CCCceEEccCCCCCCCEEEEeCCHHHHH---HH
Confidence 79999999 999999999999997543 223445566 6898 99999999999999998877766 46
Q ss_pred HHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceec
Q 004630 543 LEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSL 622 (741)
Q Consensus 543 l~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~ 622 (741)
+++.+.. ..++. ....+|||||+.|. |+|+.++.++.....+
T Consensus 67 l~~~~~~---~~fg~----------~~~~vvIEE~l~G~-------------------------E~S~~a~~dG~~~~~l 108 (194)
T PF01071_consen 67 LREIFVD---RKFGD----------AGSKVVIEEFLEGE-------------------------EVSLFALTDGKNFVPL 108 (194)
T ss_dssp HHHHHTS---STTCC----------CGSSEEEEE---SE-------------------------EEEEEEEEESSEEEEE
T ss_pred HHHhccc---cccCC----------CCCcEEEEeccCCe-------------------------EEEEEEEEcCCeEEEC
Confidence 6666642 11111 14789999999997 9999999887665555
Q ss_pred CceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHH-HHHHHHHHc-----CCcceeEEEEEEEcCCCcEE
Q 004630 623 MPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQ-RIELIANAL-----QLEGFSRIDAFVNVDNGEVL 696 (741)
Q Consensus 623 ~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~-~a~~~~~aL-----g~~G~~rvDf~v~~~~g~~~ 696 (741)
++....+ ..|+-+..-+.|.+..+.|.+. ++++..+++++ +.....++| .++|+..+.++++. +| ++
T Consensus 109 p~aqD~K---r~~dgd~GpnTGGMGa~sp~p~--~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~-~G-p~ 181 (194)
T PF01071_consen 109 PPAQDHK---RLFDGDTGPNTGGMGAYSPVPF--ITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTE-DG-PK 181 (194)
T ss_dssp EEBEEEE---EEETTTEEEEESESEEEESTTT--S-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEET-TE-EE
T ss_pred cchhccc---cccCCCCCCCCCCccceeeccc--CCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeC-CC-cE
Confidence 5443222 2344444444455666788774 68888887776 666666655 56799999999994 45 99
Q ss_pred EEecCCCCC
Q 004630 697 IIEVNTVPG 705 (741)
Q Consensus 697 viEINt~Pg 705 (741)
|+|.|.+.|
T Consensus 182 vlEfN~RfG 190 (194)
T PF01071_consen 182 VLEFNVRFG 190 (194)
T ss_dssp EEEEESSGS
T ss_pred EEEEeCCCC
Confidence 999999876
No 123
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.63 E-value=2e-14 Score=163.25 Aligned_cols=210 Identities=19% Similarity=0.262 Sum_probs=165.9
Q ss_pred cEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHH
Q 004630 424 ATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWH 503 (741)
Q Consensus 424 Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~ 503 (741)
.=+.+.+.|+.-. .|.--|-..|+...|.++....-+.|+..+.++ |.+.||.+|+|..+.+-+ ...
T Consensus 995 ~G~iis~GGQ~pn--NiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~---Ld~i~v~Qp~Wkelt~~~--------eA~ 1061 (1435)
T KOG0370|consen 995 EGIIISVGGQLPN--NIALKLHRNGVKILGTSPEMIDSAENRFKFSRM---LDSIGVDQPAWKELTSLE--------EAK 1061 (1435)
T ss_pred CceEEEecCcCcc--hhhhHhHhcCCeEecCChHhhhhhhhHHHHHHH---HHHcCCCchhhhhhccHH--------HHH
Confidence 4456666665443 356668899999999999999999999999998 999999999998776532 235
Q ss_pred HHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcch
Q 004630 504 ELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEI 583 (741)
Q Consensus 504 ~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~ 583 (741)
++.+++ +|||+|+|+.--|+..+..+++.+||..|.+. |... +++.++++-+||+|.
T Consensus 1062 ~F~~~V-gYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~---A~~v-----------------s~dhPVVisKfie~A-- 1118 (1435)
T KOG0370|consen 1062 KFAEKV-GYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQ---ASAV-----------------SPDHPVVISKFIEGA-- 1118 (1435)
T ss_pred HHHHhc-CCceEecccceecchhhhhhhcHHHHHHHHHH---Hhhc-----------------CCCCCEEhHHhhccc--
Confidence 677888 69999999999999999999999999976543 3222 126789999999986
Q ss_pred hhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHH
Q 004630 584 LFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALD 663 (741)
Q Consensus 584 ~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~ 663 (741)
+|+.+..+..+|.+.+...+.. ... +..+.|+....+|+. +++++..+
T Consensus 1119 ----------------------kEidvDAVa~~G~~~~haiSEH-vEn-------AGVHSGDAtlv~Ppq--~l~~~t~~ 1166 (1435)
T KOG0370|consen 1119 ----------------------KEIDVDAVASDGKVLVHAISEH-VEN-------AGVHSGDATLVLPPQ--DLSADTLE 1166 (1435)
T ss_pred ----------------------ceechhhhccCCeEEEEehhhh-hhc-------ccccCCceeEeCCch--hcCHHHHH
Confidence 6999988887777543221111 111 234567777788876 48999999
Q ss_pred HHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCC
Q 004630 664 KCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703 (741)
Q Consensus 664 ~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~ 703 (741)
+|++++.++++++.+.|..+++|+.. ++++.+||.|-+
T Consensus 1167 rik~i~~ki~~a~~itGPfN~Q~i~k--~n~lkVIECN~R 1204 (1435)
T KOG0370|consen 1167 RIKDIAAKVAKALKITGPFNMQIIAK--DNELKVIECNVR 1204 (1435)
T ss_pred HHHHHHHHHHHHhcccCCceEEEEec--CCeEEEEEeeee
Confidence 99999999999999999999999886 579999999974
No 124
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.63 E-value=1.3e-14 Score=164.49 Aligned_cols=195 Identities=16% Similarity=0.118 Sum_probs=124.2
Q ss_pred CccCCCCCC-CeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHH--------HH-HHHHHhH
Q 004630 1 MSKQGFITV-PSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID--------SL-KKAKGII 70 (741)
Q Consensus 1 l~~~GIp~p-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e--------~~-~~~~~~~ 70 (741)
|+++||||| .|..+++.+ ++.++++. .+|+||||..+++|+||.++++.++ ++ +++.+++
T Consensus 117 l~~~gIpt~~~~~~~~~~~----ea~~~~~~------~~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~ 186 (486)
T PRK05784 117 MWKYSIPGRLRYKVFYDVE----EAAKFIEY------GGSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIK 186 (486)
T ss_pred HHHcCcCCCccceEeCCHH----HHHHHHhh------cCCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHH
Confidence 468999997 577776544 56665532 2599999999999999999999773 22 2333332
Q ss_pred hh-----CCCCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEE
Q 004630 71 LE-----GIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYH 145 (741)
Q Consensus 71 ~~-----~~~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 145 (741)
.. ..+..+||||||.| +||||.++.++ . ..+.++..+- .+.+++++.....++ +...
T Consensus 187 ~~~~~~g~~~~~VlIEEfL~G-~E~SV~al~dG--~--~~~~l~~~qd------------~k~~~~~d~gpntGg-mg~~ 248 (486)
T PRK05784 187 EGSAYYKDVEPKILVEEKVDG-VEYTLQVLTDG--E--TVIPLPLAQD------------YPHAYEDGIGPETGG-MGSI 248 (486)
T ss_pred HhHhhccCCCCeEEEEEccCC-eEEEEEEEECC--C--eEEEeeeeEe------------ecceecCCCCCCCCC-Cccc
Confidence 11 12468999999998 99999999642 2 1222332211 234455444444443 2233
Q ss_pred cC-----CCCCHHHHHHHHHHHHHHHHHhC----C--CCeeEeeeeecCCCCccccccccccCcC-CCCcEEEEeecCCC
Q 004630 146 TP-----PRFPIVVINSIREGASLLFQRLG----L--CDFARIDGWFLPSSTHVFSSSETKYGST-EWGTILFTDINLIS 213 (741)
Q Consensus 146 ~P-----~~~~~~~~~~i~~~a~~~~~aLg----~--~g~~~iD~~~~~~~~~~~~~~~~~~r~~-~~G~~~vlEiN~~P 213 (741)
.| ..++++..+++.+++.+++++|+ + +|+.++++++ + ++| |+|||+|+|.
T Consensus 249 ~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~l~~elml-----------------t~~~G-P~vIE~n~R~ 310 (486)
T PRK05784 249 SGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGVISGQMML-----------------TELWG-PTVIEYYSRF 310 (486)
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEE-----------------ecCCC-cEEEEEeccc
Confidence 33 23567777777778887777665 3 3888999876 5 566 9999999999
Q ss_pred CCCCCChHHHHHHHcCCCHHHHHHHHHHHHHhhC
Q 004630 214 GMEQTSFLFQQASKVGFSHSNILRTIIGHACSRF 247 (741)
Q Consensus 214 gl~~~s~~~~~~~~~G~~~~~ll~~ii~~a~~r~ 247 (741)
|=..++ .+....+- +|+..++..+.++.
T Consensus 311 Gdpe~~---~llp~l~~---dl~~~~~~~~~g~l 338 (486)
T PRK05784 311 GDPEAS---NIIPRIES---DFGELFELAATGKL 338 (486)
T ss_pred CCchHH---HHHHhccC---CHHHHHHHHHcCCC
Confidence 822222 12222333 66666677776653
No 125
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.62 E-value=1.7e-14 Score=174.75 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=79.3
Q ss_pred CCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEE-eCC
Q 004630 454 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVAR-LCC 532 (741)
Q Consensus 454 ~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~-v~~ 532 (741)
.+..++.+|+||..||++ |+++|||+|++..+...+ .+.++..++ +||+||||.++++|.||++ +++
T Consensus 203 ~s~ia~~ia~DK~~tk~l---L~~~GIpvP~~~~~~s~~--------ea~~~~~~i-g~PvVVKP~~g~~G~GV~l~v~s 270 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEI---LSDAGVPVPEGTVVQSAE--------DAWEAAQDL-GYPVVIKPYDGNHGRGVTINILT 270 (864)
T ss_pred CcHHHHHHHcCHHHHHHH---HHHcCcCCCCEEEECCHH--------HHHHHHHHc-CCCEEEEECCCCCccCEEEEeCC
Confidence 457899999999999999 999999999998886532 223455678 6999999999999999998 999
Q ss_pred ccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhh
Q 004630 533 AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILF 585 (741)
Q Consensus 533 ~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v 585 (741)
.+++.+ +++.++.. +..+|||+||+|+++++
T Consensus 271 ~~el~~---a~~~a~~~-------------------~~~vlVEefI~G~e~rv 301 (864)
T TIGR02068 271 RDEIES---AYEAAVEE-------------------SSGVIVERFITGRDHRL 301 (864)
T ss_pred HHHHHH---HHHHHHhh-------------------CCcEEEEEeccCCEEEE
Confidence 888874 55555544 46799999999984433
No 126
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.61 E-value=7.8e-14 Score=148.60 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=129.9
Q ss_pred CCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCC
Q 004630 433 GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCK 512 (741)
Q Consensus 433 ~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~ 512 (741)
-+|.+...-.+...++-+ ...-+|-||..|..+ |+++|||+|+++.+...+. ..+.+.++.. ++
T Consensus 12 ~~~~~~~~~~~~~~~N~r------~~~~~~~DK~~t~~l---L~~aglpvP~T~~~~s~~~----~~~~l~~~~~---~~ 75 (317)
T TIGR02291 12 IMGMNKRNADYILRYNKR------SLYPLVDDKLKTKII---AQAAGITVPELYGVIHNQA----EVKTIHNIVK---DH 75 (317)
T ss_pred ccccCcchHHHHHhcCCc------hhccccccHHHHHHH---HHHcCCCCCCEEEecCchh----hHHHHHHHHc---cC
Confidence 345555444555554443 455778999999998 9999999999887765431 1122333333 34
Q ss_pred -cEEEecCCCCCCcceEEeCCccchH---------------HHHH-HHHHHHhcCCCCCcccccccccCCCCCCCeEEEe
Q 004630 513 -TLCVKPARDGCSTGVARLCCAEDLT---------------VYVK-ALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575 (741)
Q Consensus 513 -PvvVKP~~~gsS~GV~~v~~~~eL~---------------~~~~-al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVE 575 (741)
|+||||..++.++||.++++.++.. .... .+...... ....+.+++|
T Consensus 76 ~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l----------------~~~~~~~lvE 139 (317)
T TIGR02291 76 PDFVIKPAQGSGGKGILVITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSL----------------GGKNDVALIE 139 (317)
T ss_pred CCEEEEECCCCCccCeEEEEeccccccccccccccchHHHHHHHHHHHHHHHhc----------------cCCCcEEEEE
Confidence 6999999999999999997765432 1111 11111111 0012356776
Q ss_pred ecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccC-CccccccccccCCC-ce------
Q 004630 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQGGT-GI------ 647 (741)
Q Consensus 576 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~-~~~~d~~~ky~~g~-~~------ 647 (741)
+++...+.. . --+...++.+.+-++++.. .....+.... +++ ...+..|. ..
T Consensus 140 ~~i~~~~~~-~------------~~~~~~v~diRV~vv~~~~----vaa~~R~~~~~~~~---~tN~~~Gg~~~~vdl~t 199 (317)
T TIGR02291 140 YRVKFDPCF-D------------GFSYEGVPDIRIIVFKGYP----VMAMMRLPTRASDG---KANLHQGAVGVGIDLAT 199 (317)
T ss_pred eeccCCcch-h------------ccccCCCCCEEEEEECCEE----EEEEEEccCccCCc---ccccccCCceeeeecCC
Confidence 665432100 0 0001112355555554321 0001111100 111 11111111 00
Q ss_pred -------------EEcCC---CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCch
Q 004630 648 -------------NLTPP---PASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTV 711 (741)
Q Consensus 648 -------------~~~Pa---~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~ 711 (741)
...|. +..-+.-+..+++.++|.++++++|| |++++|++++. ++.++|+|||+.||||
T Consensus 200 G~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~-~~g~~VlEVN~~Pg~t---- 273 (317)
T TIGR02291 200 GKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDK-EEGPLVLELNARPGLA---- 273 (317)
T ss_pred CccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeC-CCCEEEEEeCCCCCCC----
Confidence 01111 00112335567899999999999999 99999999985 5789999999999999
Q ss_pred HHHHHHhcCCCCCHH
Q 004630 712 LIHQALSEQPPMYPH 726 (741)
Q Consensus 712 l~~~a~~a~~~~~p~ 726 (741)
++.|..+ +++|.
T Consensus 274 -~~~a~~~--Gl~~~ 285 (317)
T TIGR02291 274 -IQIANGA--GLLPR 285 (317)
T ss_pred -HHHHHHC--CCcHH
Confidence 3444444 37764
No 127
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.60 E-value=7.7e-15 Score=157.74 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=134.2
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh----CCCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~----~~~~ 76 (741)
|+++||||+.|..+++.+ ++.+++++.+. |+||||....+++||.++.+.+|+.+++.+++.. ....
T Consensus 111 m~k~~IPta~y~~f~~~e----~a~ayi~~~g~-----piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~ 181 (428)
T COG0151 111 MKKYGIPTAEYEVFTDPE----EAKAYIDEKGA-----PIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGA 181 (428)
T ss_pred HHHcCCCcccccccCCHH----HHHHHHHHcCC-----CEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCC
Confidence 578999999999999666 77778876655 9999999999999999999999999998887753 1235
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~ 156 (741)
.|+||||++| .|+|+.++.++. .. +.+++. ++.++.++-+.-.+++++..+..+.-+++++.+
T Consensus 182 ~VVIEEfL~G-eE~S~~a~~DG~--~v--~p~p~a------------QDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~ 244 (428)
T COG0151 182 RVVIEEFLDG-EEFSLQAFVDGK--TV--IPMPTA------------QDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVE 244 (428)
T ss_pred cEEEEecccc-eEEEEEEEEcCC--eE--EECccc------------cccccccCCCCCCCCCCCCCCCCCCCCCHHHHH
Confidence 7999999998 999999998643 21 222221 114566666666666765555555557888888
Q ss_pred HHH-HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCC
Q 004630 157 SIR-EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM 215 (741)
Q Consensus 157 ~i~-~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl 215 (741)
++. ++.+..++++.-+|+....+++ .+|+++.+| |+|||.|.|-|=
T Consensus 245 ~~~~~Iv~ptv~gm~~EG~~f~GvLy------------~glMlt~~G-PkViEfN~RFGD 291 (428)
T COG0151 245 RAVEEIVEPTVEGMAKEGYPFRGVLY------------AGLMLTADG-PKVIEFNARFGD 291 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEE------------eEEEEcCCC-cEEEEEecccCC
Confidence 877 7888888888776666666665 357778999 999999998773
No 128
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.60 E-value=3.2e-15 Score=145.82 Aligned_cols=148 Identities=19% Similarity=0.224 Sum_probs=73.1
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|........ ....+|+|+||..|++|.||.++++.+++..... ...++
T Consensus 11 L~~~gi~~P~~~~~~~~----------------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~--------~~~i~ 66 (161)
T PF02655_consen 11 LKELGIPVPTTLRDSEP----------------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLN--------KLRIV 66 (161)
T ss_dssp HTTT-S--------EES----------------S--SSSEEEEESS-------B--SS--TTE---------------EE
T ss_pred HHccCCCCCCccccccc----------------cccCCcEEEEeCCCCCCCCeEEECCchhhccccc--------cceEE
Confidence 57889999833222211 1235699999999999999999999988543322 12299
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~ 160 (741)
||||+| .++|+.++.++. +...+. ..+-.+.. ...-+.| .....|... ....++.+
T Consensus 67 Qe~i~G-~~~Sv~~l~~~~--~~~~l~--~~rq~i~~--------~~~~~~~---------~G~~~~~~~--~~~~~~~~ 122 (161)
T PF02655_consen 67 QEFIEG-EPYSVSFLASGG--GARLLG--VNRQLIGN--------DDGRFRY---------CGGIVPADT--PLKEEIIE 122 (161)
T ss_dssp EE---S-EEEEEEEEE-SS--SEEEEE--EEEEEEET------------TEE---------EEEEES------HHHHHHH
T ss_pred eeeeCC-EEeEEEEEEeCC--ceEEEE--echHhhcc--------ccceeee---------cccccccCC--chHHHHHH
Confidence 999998 999999997532 222222 21111110 0000111 223456543 33888999
Q ss_pred HHHHHHHHh-CCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCC
Q 004630 161 GASLLFQRL-GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214 (741)
Q Consensus 161 ~a~~~~~aL-g~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pg 214 (741)
+|++++++| |+.|+..|||++ .++.+||+|||||++
T Consensus 123 ~~~~i~~~l~gl~G~~giD~I~------------------~~~~~~viEINPR~t 159 (161)
T PF02655_consen 123 LARRIAEALPGLRGYVGIDFIL------------------DDGGPYVIEINPRFT 159 (161)
T ss_dssp HHHHHHTTSTT--EEEEEEEEE------------------SS-SEEEEEEESS--
T ss_pred HHHHHHHHcCCCeeeEeEEEEE------------------eCCcEEEEEEcCCCC
Confidence 999999999 999999999987 347799999999986
No 129
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.59 E-value=9e-14 Score=149.14 Aligned_cols=236 Identities=16% Similarity=0.126 Sum_probs=149.1
Q ss_pred CccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcC-------CCccCeEEEeCcccc
Q 004630 422 NQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG-------VLTINKDVRRKEDLL 494 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~G-------Ip~p~~~~v~~~e~~ 494 (741)
.+|+|+-=+.+.....-...-.+|..|+|.+ ..+.+...|.||..|.++ |+++| ||+|+++++...+..
T Consensus 66 pfDvilhK~~~~~~~~~~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~---L~~~~~~~~~~~i~~P~t~v~~~~~~a 141 (328)
T PLN02941 66 PFDVILHKLYGKEWRQQLEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQV---VADLKLSDGYGSVGVPKQLVVYDDESS 141 (328)
T ss_pred CcCEEEEecCCHHHHHHHHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHH---HHHcCCcccCCCCCCCCEEEEcCHHHH
Confidence 4688887776532222233445678899987 457899999999999988 89999 999999999765410
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCC---CCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCe
Q 004630 495 KTPIVDIWHELTSKLQCKTLCVKPARD---GCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 571 (741)
Q Consensus 495 ~~~~~~~~~~~~~~lg~~PvvVKP~~~---gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~ 571 (741)
... ....+++ +||+|+||..+ ..|.++.++.+.+.|.. + ..+
T Consensus 142 ----l~~-~~~~~~l-~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~--------l---------------------~~p 186 (328)
T PLN02941 142 ----IPD-AVALAGL-KFPLVAKPLVADGSAKSHKMSLAYDQEGLSK--------L---------------------EPP 186 (328)
T ss_pred ----HHH-HHHHhcC-CCCEEEeecccCCCccccceEEecCHHHHHh--------c---------------------CCc
Confidence 011 1224678 69999999998 67899999998877652 1 346
Q ss_pred EEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCce--ecCceEE---EccCCcccccc--ccccCC
Q 004630 572 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMH--SLMPSVT---VKESGDILSLE--EKFQGG 644 (741)
Q Consensus 572 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~--~~~~~~~---i~~~~~~~d~~--~ky~~g 644 (741)
+++||||.-. ++.|.|-|+|+.-..+ .-.+.+. .....+.+.|. .+...+
T Consensus 187 ~~lQEfVnh~-----------------------g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~ 243 (328)
T PLN02941 187 LVLQEFVNHG-----------------------GVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAAS 243 (328)
T ss_pred EEEEEecCCC-----------------------CEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccc
Confidence 9999999531 1477777777641000 0011111 00111122221 111111
Q ss_pred Cc-eE---EcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCC-CcEEEEecCCCCCCCCCchHHHHHHhc
Q 004630 645 TG-IN---LTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-GEVLIIEVNTVPGMTPSTVLIHQALSE 719 (741)
Q Consensus 645 ~~-~~---~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~-g~~~viEINt~Pg~t~~S~l~~~a~~a 719 (741)
.. .. ..|.. .+....+.+.++|.++.++||+. ++.||++.+.++ ++++|+|||..||+-...
T Consensus 244 ~~~~~~~~~~~~~---~~~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p--------- 310 (328)
T PLN02941 244 ADDADNGGLDPEV---AELPPRPFLEDLARELRRRLGLR-LFNFDMIREHGTGDRYYVIDINYFPGYAKMP--------- 310 (328)
T ss_pred ccccccccccccc---ccCCChHHHHHHHHHHHHHhCCc-eEEEEEEeecCCCCceEEEEecCCCccccCC---------
Confidence 00 00 01111 01122356899999999999986 999999988533 478999999999988764
Q ss_pred CCCCCHHHHHHHHHHH
Q 004630 720 QPPMYPHQFFRKVLDL 735 (741)
Q Consensus 720 ~~~~~p~~l~~~li~~ 735 (741)
-|...|.+-+++.
T Consensus 311 ---~~~~~l~~~~~~~ 323 (328)
T PLN02941 311 ---GYETVLTDFLLSL 323 (328)
T ss_pred ---chHHHHHHHHHHH
Confidence 5655555555544
No 130
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.59 E-value=3.8e-14 Score=150.42 Aligned_cols=167 Identities=20% Similarity=0.195 Sum_probs=128.4
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCC-CcceEEeCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS-SIGVTVAYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~-S~GV~~v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||||||..+.+.+ ++.++++++|+ |+|+|-+.+|+ |+|..++++.+++...+.... .....+
T Consensus 107 l~~~Gi~va~~~~v~~~~----el~~~~~~~g~-----p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~---~~~~~v 174 (375)
T COG0026 107 LDKAGLPVAPFQVVDSAE----ELDAAAADLGF-----PAVLKTRRGGYDGKGQWRIRSDADLELRAAGLA---EGGVPV 174 (375)
T ss_pred HHHcCCCCCCeEEeCCHH----HHHHHHHHcCC-----ceEEEeccccccCCCeEEeeCcccchhhHhhhh---ccCcee
Confidence 468999999999999877 77777776665 99999999887 999999999888654343321 122339
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
+|+|++-.+|+||.+.+..+| ...+.|+.|=. +.+++ ......|+.++..+.++.+
T Consensus 175 lE~fV~F~~EiSvi~aR~~~G---~~~~yP~~eN~----------h~~gI-----------l~~siaPa~i~~~~~~~A~ 230 (375)
T COG0026 175 LEEFVPFEREISVIVARSNDG---EVAFYPVAENV----------HRNGI-----------LRTSIAPARIPDDLQAQAE 230 (375)
T ss_pred EEeecccceEEEEEEEEcCCC---CEEEeccccee----------eecCE-----------EEEEEecCcCCHHHHHHHH
Confidence 999998779999999986443 23344443211 02222 3445689999999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLF 222 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~ 222 (741)
++|.++++.|++.|+..|+||+ +.+|+++++|+-|||. .++.++
T Consensus 231 ~~a~~i~~~L~yvGVl~vE~Fv-----------------~~dg~llvNEiAPRvH--NSGH~T 274 (375)
T COG0026 231 EMAKKIAEELDYVGVLAVEFFV-----------------TPDGELLVNEIAPRVH--NSGHWT 274 (375)
T ss_pred HHHHHHHHHcCceEEEEEEEEE-----------------ECCCcEEEeeccCCCC--Cccccc
Confidence 9999999999999999999998 5788999999999997 444443
No 131
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.59 E-value=5e-14 Score=153.17 Aligned_cols=200 Identities=14% Similarity=0.048 Sum_probs=132.5
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh---CCCCe
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE---GIDDR 77 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~---~~~~~ 77 (741)
|+++|||+|+++ .+.+ + +.||+||||..+.+|+|+.+++|.+|+.+++..++.. +....
T Consensus 131 L~~aGIp~p~~~--~~~~----~------------i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~ 192 (358)
T PRK13278 131 LEEAGIRIPRKY--ESPE----D------------IDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEE 192 (358)
T ss_pred HHHcCCCCCCEe--CCHH----H------------cCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCe
Confidence 468999999963 2222 1 3469999999999999999999999987777765421 12578
Q ss_pred EEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccC------CCCCCCeEEEcCCCCC
Q 004630 78 VVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRK------YLPTQQVAYHTPPRFP 151 (741)
Q Consensus 78 vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k------~~~~~~~~~~~P~~~~ 151 (741)
++|||||.| .||++.++-..-.++ ...+.+.+..... .+.++....+ ..+........|+.+.
T Consensus 193 ~iIEEfI~G-~e~sv~~f~s~~~~~--~e~l~id~r~~~~--------~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~~~r 261 (358)
T PRK13278 193 AIIQEYVVG-VPYYFHYFYSPIKNR--LELLGIDRRYESN--------IDGLVRIPAKDQLELGIDPTYVVVGNIPVVLR 261 (358)
T ss_pred EEEEecCCC-cEEEEEEEEeccCCe--EEEEeeceeeeec--------ccceeeccchhhhhcccCCceeEecceeccch
Confidence 999999998 999999985310011 1222222221110 1112221111 0111112235788889
Q ss_pred HHHHHHHHHHHHHHHHH----h--CCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCC-CCCC----CCh
Q 004630 152 IVVINSIREGASLLFQR----L--GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLIS-GMEQ----TSF 220 (741)
Q Consensus 152 ~~~~~~i~~~a~~~~~a----L--g~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~P-gl~~----~s~ 220 (741)
+.+..++.+.+.+++++ + |+.|..++|+++ ++++.+||+|+|+|. |-+. .|.
T Consensus 262 esll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~-----------------~~d~~~~V~Eis~R~~ggtn~~~~~s~ 324 (358)
T PRK13278 262 ESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVV-----------------TDNLEIVVFEISARIVAGTNLYMNGSP 324 (358)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEE-----------------cCCCCEEEEEEeCcccCCccceeCCCc
Confidence 99999999999999887 4 778999999987 678999999999999 5332 454
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004630 221 LFQQASKVGFSHSNILRTIIGHACSR 246 (741)
Q Consensus 221 ~~~~~~~~G~~~~~ll~~ii~~a~~r 246 (741)
|..+---..+|.-.=+.+=|+.|+..
T Consensus 325 y~~~~~~~~~~~grria~ei~~a~~~ 350 (358)
T PRK13278 325 YSYLYWDEPMSMGRRIAREIKLALEK 350 (358)
T ss_pred chheecCCcccHHHHHHHHHHHHHhh
Confidence 54444445666666666666777654
No 132
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.58 E-value=1.5e-14 Score=145.09 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=87.3
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|+++|||+|++..+.+.+ ++.+++++++ +||+|+||..++.|.||.++++.+++...+.... ..+..+++
T Consensus 11 l~~~gipvP~t~~~~~~~----~~~~~~~~~~----~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~--~~~~~~~~ 80 (190)
T PF08443_consen 11 LAKAGIPVPETRVTNSPE----EAKEFIEELG----GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFK--RLENPILV 80 (190)
T ss_dssp HHHTT-----EEEESSHH----HHHHHHHHH------SSEEEE-SB-------EEEESHCHHHHHHH-------TTT-EE
T ss_pred HHHCCcCCCCEEEECCHH----HHHHHHHHhc----CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHH--hccCcceE
Confidence 468999999999987755 6677776652 4599999999999999999999999765544321 23568899
Q ss_pred eeccCC--CeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHH
Q 004630 81 ELFLEG--GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158 (741)
Q Consensus 81 Ee~i~G--~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i 158 (741)
|+||+. ++|++|.|++ ++ .+.. +.... .+ -+|......++ ...|..++ +++
T Consensus 81 Q~fI~~~~g~d~Rv~Vig----~~--vv~a----~~r~~--------~~--~d~r~n~~~g~---~~~~~~l~----~e~ 133 (190)
T PF08443_consen 81 QEFIPKDGGRDLRVYVIG----GK--VVGA----YRRSS--------PE--GDFRTNLSRGG---KVEPYDLP----EEI 133 (190)
T ss_dssp EE----SS---EEEEEET----TE--EEEE----EE-------------------------------EE--------HHH
T ss_pred eccccCCCCcEEEEEEEC----CE--EEEE----EEEec--------Cc--ccchhhhccCc---eEEEecCC----HHH
Confidence 999974 2699999994 22 1210 11111 11 13333333333 12333444 467
Q ss_pred HHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHH
Q 004630 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238 (741)
Q Consensus 159 ~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ 238 (741)
.++|.++.++||+ +++.||++- .++.+||+|||+.||+.. +.+.+|++..+.+..
T Consensus 134 ~~~a~~~~~~lgl-~~~giDi~~------------------~~~~~~v~EvN~~~~~~~------~~~~~g~~i~~~i~~ 188 (190)
T PF08443_consen 134 KELALKAARALGL-DFAGIDILD------------------TNDGPYVLEVNPNPGFRG------IEEATGIDIAEEIAE 188 (190)
T ss_dssp HHHHHHHHHHTT--SEEEEEEEE------------------ETTEEEEEEEETT---TT------HHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhCC-CEEEEEEEe------------------cCCCeEEEEecCCchHhH------HHHHHCcCHHHHHHh
Confidence 8889999999997 599999542 345699999999999875 235679986554443
No 133
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.58 E-value=6.1e-14 Score=154.46 Aligned_cols=248 Identities=20% Similarity=0.265 Sum_probs=178.3
Q ss_pred HHHHHhc-cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCcc
Q 004630 414 EWIKLAK-ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 492 (741)
Q Consensus 414 ~~~~~~~-~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e 492 (741)
+.++.++ .++|.|-|-. |...|.......+...||.|+|+++.-..-.-||...+.+ .-++|+|+.|..--.
T Consensus 97 eii~iak~~~vdavHPGY-GFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~---Ai~agVpvVPGTpgP--- 169 (1176)
T KOG0369|consen 97 EIISIAKKHNVDAVHPGY-GFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAI---AIEAGVPVVPGTPGP--- 169 (1176)
T ss_pred HHHHHHHHcCCCeecCCc-cccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHH---HHHcCCCccCCCCCC---
Confidence 3344443 3566654432 4444888999999999999999999999999999999998 889999987753211
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHH-HHHHHHHHHhcCCCCCcccccccccCCCCCCCe
Q 004630 493 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTV-YVKALEECLLRIPPNSFSRAHGMIEMPNPPPEI 571 (741)
Q Consensus 493 ~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~-~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~ 571 (741)
.. .. +...++.++. ++|+++|.+.+|+++|+.+|++.+++++ |..|-.++... .| +..
T Consensus 170 it--t~-~EA~eF~k~y-G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aa---------FG--------nG~ 228 (1176)
T KOG0369|consen 170 IT--TV-EEALEFVKEY-GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAA---------FG--------NGT 228 (1176)
T ss_pred cc--cH-HHHHHHHHhc-CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHh---------cC--------Cce
Confidence 10 11 2334567888 6999999999999999999999999875 32333333221 22 678
Q ss_pred EEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcC
Q 004630 572 LIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTP 651 (741)
Q Consensus 572 vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~P 651 (741)
+.||+||+-. +.|++.+++++...+.-. .+. +-.+.. . ......+.|
T Consensus 229 ~FvEkF~ekP------------------------rHIEvQllgD~~GNvvHL--yER--DCSvQR---R--HQKVVEiAP 275 (1176)
T KOG0369|consen 229 LFVEKFLEKP------------------------RHIEVQLLGDKHGNVVHL--YER--DCSVQR---R--HQKVVEIAP 275 (1176)
T ss_pred eeHHhhhcCc------------------------ceeEEEEecccCCCEEEE--eec--ccchhh---h--hcceeEecc
Confidence 9999999976 699999999874332111 000 000111 1 112345777
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCC--------CCCCCchHHHHHHhcCCCC
Q 004630 652 PPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP--------GMTPSTVLIHQALSEQPPM 723 (741)
Q Consensus 652 a~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~P--------g~t~~S~l~~~a~~a~~~~ 723 (741)
++. |++++.++|-.-|.++++..|.+....++|.+|. .|+.||||||++- .+|...+.-.|.-.|+|..
T Consensus 276 A~~--Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~t 352 (1176)
T KOG0369|consen 276 AKT--LPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGAS 352 (1176)
T ss_pred ccc--CCHHHHHHHHHHHHHHHHHhCcccCCceEEEEcc-CCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCC
Confidence 764 8999999999999999999999999999999995 6999999999854 4556666666666666655
Q ss_pred CH
Q 004630 724 YP 725 (741)
Q Consensus 724 ~p 725 (741)
.|
T Consensus 353 Lp 354 (1176)
T KOG0369|consen 353 LP 354 (1176)
T ss_pred cc
Confidence 55
No 134
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.56 E-value=3.3e-14 Score=145.67 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=121.5
Q ss_pred ccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHh--hCCCCeEE
Q 004630 2 SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL--EGIDDRVV 79 (741)
Q Consensus 2 ~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~--~~~~~~vl 79 (741)
+++|+||.+|....+.+ ++.++++++|| |+||||..+++++|.+++++.+++..+-..... +.....++
T Consensus 123 eeLglpTs~Y~fa~s~~----e~~~a~~~iGf-----PcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVI 193 (394)
T COG0027 123 EELGLPTSKYRFADSLE----ELRAAVEKIGF-----PCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVI 193 (394)
T ss_pred HHhCCCCccccccccHH----HHHHHHHHcCC-----CeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEE
Confidence 47899999999988776 88888877665 999999999999999999999996433332222 22346899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHH
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~ 159 (741)
||+||+-..|+|...++..++. .+.+-|.+.+ ..-.||.+-| .|..+++...++.+
T Consensus 194 VE~fv~fd~EiTlLtvr~~~~~--~~Fc~PIGHr-------------q~dgdY~ESW---------QP~~mS~~al~~A~ 249 (394)
T COG0027 194 VEEFVKFDFEITLLTVRAVDGT--GSFCAPIGHR-------------QEDGDYRESW---------QPQEMSEAALEEAQ 249 (394)
T ss_pred EEEEecceEEEEEEEEEEecCC--CCcCCCcccc-------------cCCCChhccc---------CccccCHHHHHHHH
Confidence 9999985466666666543332 1233333322 1122343333 56679999999999
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCC
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~ 216 (741)
.+|.++.++||.+|.+.|++|+ ...++||.|+.|||.=+
T Consensus 250 ~IA~~vt~aLGG~GiFGVElfv------------------~gDeV~FsEVSPRPHDT 288 (394)
T COG0027 250 SIAKRVTDALGGRGLFGVELFV------------------KGDEVIFSEVSPRPHDT 288 (394)
T ss_pred HHHHHHHHhhcCccceeEEEEE------------------eCCEEEEeecCCCCCCC
Confidence 9999999999999999999998 23469999999999643
No 135
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.56 E-value=8e-14 Score=139.16 Aligned_cols=192 Identities=21% Similarity=0.200 Sum_probs=142.7
Q ss_pred HHHHHhccCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccc
Q 004630 414 EWIKLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDL 493 (741)
Q Consensus 414 ~~~~~~~~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~ 493 (741)
+++....++.|..+.+.....|.--++...+|.+ +--.||++.|.++|.||..|.+. |+.+ +++|++.- |
T Consensus 65 ~~~ek~le~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~a---Lr~a-V~~p~t~e-----~ 134 (307)
T COG1821 65 RDEEKALEKADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKA---LRDA-VKQPPTRE-----W 134 (307)
T ss_pred HHHHHHHhcCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHH---Hhhh-ccCCCccc-----c
Confidence 4555556678998888876666666888888988 66789999999999999999998 8888 99998753 2
Q ss_pred cCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEE
Q 004630 494 LKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILI 573 (741)
Q Consensus 494 ~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vl 573 (741)
. +. ..-+||||+++.++.|+....+..++ .|
T Consensus 135 ~-------------~~-~~k~ViKp~dgCgge~i~~~~~~pd~-----------------------------------~i 165 (307)
T COG1821 135 A-------------EE-PKKYVIKPADGCGGEGILFGRDFPDI-----------------------------------EI 165 (307)
T ss_pred c-------------cC-CceEEecccccCCcceeeccCCCcch-----------------------------------hh
Confidence 1 11 34589999999999999887655443 46
Q ss_pred EeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccC-CccccccccccCCCceEEcCC
Q 004630 574 FEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES-GDILSLEEKFQGGTGINLTPP 652 (741)
Q Consensus 574 VEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~-~~~~d~~~ky~~g~~~~~~Pa 652 (741)
+|+||+|. .+|+++.... ....+ .+..+ -.|+..+-+|.++. +|
T Consensus 166 ~qEfIeG~-------------------------~lSVSL~~GE-kv~pL----svNrQfi~~~~~~~~y~gg~----~p- 210 (307)
T COG1821 166 AQEFIEGE-------------------------HLSVSLSVGE-KVLPL----SVNRQFIIFAGSELVYNGGR----TP- 210 (307)
T ss_pred HHHhcCCc-------------------------ceEEEEecCC-ccccc----eechhhhhhccceeeeccCc----CC-
Confidence 78899997 7788844332 22111 11111 12344455677664 23
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcC-CcceeEEEEEEEcCCCcEEEEecCCCCCC
Q 004630 653 PASIMSTEALDKCKQRIELIANALQ-LEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706 (741)
Q Consensus 653 ~~~~l~~e~~~~i~~~a~~~~~aLg-~~G~~rvDf~v~~~~g~~~viEINt~Pg~ 706 (741)
++.++.+++.+.|.++.+.++ |+||..||+.+. +++|++||||+|-.
T Consensus 211 ----i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls---D~pYvIEINpR~TT 258 (307)
T COG1821 211 ----IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS---DEPYVIEINPRPTT 258 (307)
T ss_pred ----CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec---CCcEEEEecCCCCc
Confidence 356889999999999999995 999999999886 57999999998863
No 136
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.54 E-value=5.5e-14 Score=154.79 Aligned_cols=233 Identities=20% Similarity=0.199 Sum_probs=169.7
Q ss_pred cCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHh----hCCCCeE
Q 004630 3 KQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIIL----EGIDDRV 78 (741)
Q Consensus 3 ~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~----~~~~~~v 78 (741)
++|+|+.|...--- ...+|..+++++.|+ |+|+|...||+++|+.++++.+++.+...+... .-.++.+
T Consensus 157 ~agVpvVPGTpgPi--tt~~EA~eF~k~yG~-----PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~ 229 (1176)
T KOG0369|consen 157 EAGVPVVPGTPGPI--TTVEEALEFVKEYGL-----PVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTL 229 (1176)
T ss_pred HcCCCccCCCCCCc--ccHHHHHHHHHhcCC-----cEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCcee
Confidence 57999887753211 123467778877666 999999999999999999998876554443322 1135789
Q ss_pred EEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCC-CCCHHHHHH
Q 004630 79 VVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPP-RFPIVVINS 157 (741)
Q Consensus 79 lVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~-~~~~~~~~~ 157 (741)
+||+||+-.+.+.|.++++..|+ ++.+ ..+-|+.+.+++. .-.+.|+ .+|++++++
T Consensus 230 FvEkF~ekPrHIEvQllgD~~GN----vvHL----------------yERDCSvQRRHQK---VVEiAPA~~Lp~~vR~~ 286 (1176)
T KOG0369|consen 230 FVEKFLEKPRHIEVQLLGDKHGN----VVHL----------------YERDCSVQRRHQK---VVEIAPAKTLPPEVRDA 286 (1176)
T ss_pred eHHhhhcCcceeEEEEecccCCC----EEEE----------------eecccchhhhhcc---eeEecccccCCHHHHHH
Confidence 99999976699999999876554 3211 1122343333332 2245555 589999999
Q ss_pred HHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHH
Q 004630 158 IREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILR 237 (741)
Q Consensus 158 i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~ 237 (741)
|..-|.++++.+|++..+.++|++ |..|+.||||||||-....+- ..+-+|+ +++.
T Consensus 287 ~~~davklAk~vgY~NAGTvEFLv-----------------D~~g~hYFIEvN~RlQVEHTv----TEEITgv---DlV~ 342 (1176)
T KOG0369|consen 287 ILTDAVKLAKHVGYENAGTVEFLV-----------------DQKGRHYFIEVNPRLQVEHTV----TEEITGV---DLVQ 342 (1176)
T ss_pred HHHHHHHHHHHhCcccCCceEEEE-----------------ccCCCEEEEEecCceeeeeee----eeeeccc---hhhh
Confidence 999999999999999999999998 578999999999988876531 2234566 7888
Q ss_pred HHHHHHHhhC-CCC----CCCCCccccCCCCCCCCCCccccccccCceEEEEEecCC
Q 004630 238 TIIGHACSRF-PNL----ASYNSVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGD 289 (741)
Q Consensus 238 ~ii~~a~~r~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~ 289 (741)
..|..|-.+- +.+ ......++++++|..-+||..+|-|-++++.|.=--||.
T Consensus 343 aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtGriEVfRSgeGm 399 (1176)
T KOG0369|consen 343 AQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTGRIEVFRSGEGM 399 (1176)
T ss_pred hhhhhhcCCCcccccccccceeecceEEEEEEeccCccccCCCCCceEEEEEeCCCc
Confidence 8888886662 111 233345899999999999999999999998887655554
No 137
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.53 E-value=2.8e-13 Score=145.23 Aligned_cols=231 Identities=13% Similarity=0.065 Sum_probs=150.3
Q ss_pred EccCCCCCCchHHHHHHHHcCCCccCCCHHH-HHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHH
Q 004630 428 IAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA-SKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 506 (741)
Q Consensus 428 ~~lhG~~GEdg~iq~lLE~~giPyvG~~~~a-sal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~ 506 (741)
.+=||.+-+--.+..+...+.+|+.|+-..- ..--.||..+.++ |+++||++|+.+.- .
T Consensus 89 ~iPh~sf~~y~g~~~ie~~~~vp~fGnr~~lrwE~~~dKk~~yk~---L~~aGI~~Pk~~~~-p---------------- 148 (366)
T PRK13277 89 FVPNRSFAVYVGYDAIENEFKVPIFGNRYLLRWEERTGEKNYYWL---LEKAGIPYPKLFKD-P---------------- 148 (366)
T ss_pred EecCCCeEEEecHHHHhhcCCCCcccCHHHhhhhhccCHHHHHHH---HHHcCCCCceeecC-c----------------
Confidence 3446777665556666657999999986442 2233688887777 89999999998651 1
Q ss_pred hhcCCCcEEEecCCCCC--CcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchh
Q 004630 507 SKLQCKTLCVKPARDGC--STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEIL 584 (741)
Q Consensus 507 ~~lg~~PvvVKP~~~gs--S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~ 584 (741)
.++ .+||||||..+.+ |+|+.+++|.+|+... .....+. +.... + ....++|||||.|.
T Consensus 149 ~eI-d~PVIVKp~~asG~~srG~f~a~s~eEl~~~---a~~l~~~---g~I~~-----~----~~~~~iIQEyI~G~--- 209 (366)
T PRK13277 149 EEI-DRPVIVKLPEAKRRLERGFFTASSYEDFYEK---SEELIKA---GVIDR-----E----DLKNARIEEYVIGA--- 209 (366)
T ss_pred ccc-CccEEEEECCCCCccccCeEeeCCHHHHHHH---HHhhhhc---Ccccc-----c----ccccceeEeccCCC---
Confidence 245 6999999999999 9999999999998753 2222110 00000 0 02567899999997
Q ss_pred hcccccccchhhhhhcCCCceeEEEEEEEcC--CCCceecCceEEEcc-CCccccccccccC----CC--ceE-EcCCCC
Q 004630 585 FSSQSTNKNADRLMWKGNSRWVEITVGVIGK--CGSMHSLMPSVTVKE-SGDILSLEEKFQG----GT--GIN-LTPPPA 654 (741)
Q Consensus 585 v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~--~~~~~~~~~~~~i~~-~~~~~d~~~ky~~----g~--~~~-~~Pa~~ 654 (741)
|+++.++.+ ++....+.+..++.. -+++...-++-+- .. +.. ..|..
T Consensus 210 ----------------------ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G~~p~t- 266 (366)
T PRK13277 210 ----------------------HFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVGHEPAT- 266 (366)
T ss_pred ----------------------EEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEcCcccc-
Confidence 888888866 343333332222221 1223322211100 00 000 14444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcC------CcceeEEEEEEEcCCCcEEEEecCCC-CCCCCCchHHHHHHhcCCCCCHHH
Q 004630 655 SIMSTEALDKCKQRIELIANALQ------LEGFSRIDAFVNVDNGEVLIIEVNTV-PGMTPSTVLIHQALSEQPPMYPHQ 727 (741)
Q Consensus 655 ~~l~~e~~~~i~~~a~~~~~aLg------~~G~~rvDf~v~~~~g~~~viEINt~-Pg~t~~S~l~~~a~~a~~~~~p~~ 727 (741)
+.+.+.+++.++++++.++++ +.|...+|+++++ ++++|++|||++ +|-|+.+ .++|+-||..
T Consensus 267 --~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~~~~V~EInpR~gGGtnl~-------~~aGs~y~~l 336 (366)
T PRK13277 267 --IRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DLDFVVYDVAPRIGGGTNVY-------MGVGSPYSKL 336 (366)
T ss_pred --chHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CCcEEEEEEcCCcCCCccce-------eecCCCcHHH
Confidence 567789999999999999976 6899999999984 699999999995 7777765 2223456655
Q ss_pred HHH
Q 004630 728 FFR 730 (741)
Q Consensus 728 l~~ 730 (741)
+++
T Consensus 337 ~~~ 339 (366)
T PRK13277 337 YFG 339 (366)
T ss_pred Hhc
Confidence 543
No 138
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.52 E-value=3.6e-13 Score=144.46 Aligned_cols=172 Identities=16% Similarity=0.125 Sum_probs=120.4
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeC-CHHHHH------------HHHH
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY-GVIDSL------------KKAK 67 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~-~~~e~~------------~~~~ 67 (741)
|+++|||+|++..+++.+ ++.++.+++++ .+.|+.|||..|-+|.|..+++ +.+++. +.+.
T Consensus 115 ~~~~~ipvp~~~~v~t~~----el~~a~~~l~~--~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~ 188 (329)
T PF15632_consen 115 MEANGIPVPPYWRVRTAD----ELKAAYEELRF--PGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELL 188 (329)
T ss_pred HHhCCCCCCCEEEeCCHH----HHHHHHHhcCC--CCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHH
Confidence 467899999999999877 77777766554 3557999999999999999998 333321 1222
Q ss_pred HhHh-hCCCCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEc
Q 004630 68 GIIL-EGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHT 146 (741)
Q Consensus 68 ~~~~-~~~~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 146 (741)
.++. ...-.++||.||++| .||||+++.+. +..++..+ +. |. +. .....
T Consensus 189 ~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~----G~viaaV~-R~---------------------K~--G~-~q~l~ 238 (329)
T PF15632_consen 189 AALQRSEEFPPLLVMEYLPG-PEYSVDCLADE----GRVIAAVP-RR---------------------KL--GR-RQVLE 238 (329)
T ss_pred HHHhccCCCCCcEEecCCCC-CeEEEEEEecC----CEEEEEEE-EE---------------------ec--Cc-eeEEE
Confidence 2222 123468999999998 99999999742 23332211 11 11 10 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHH
Q 004630 147 PPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQAS 226 (741)
Q Consensus 147 P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~ 226 (741)
..+.+.++|+++++.+|+.|..+|+++. |.+|+++++||||||.- .+. ...
T Consensus 239 -------~~~~l~e~a~~l~~~~~l~g~~NiQ~r~-----------------d~~g~p~LLEINpR~sG----Gi~-~s~ 289 (329)
T PF15632_consen 239 -------NDEELIELARRLAEAFGLDGLFNIQFRY-----------------DEDGNPKLLEINPRPSG----GIG-YSC 289 (329)
T ss_pred -------ECHHHHHHHHHHHHHhCCCceEEEEEEE-----------------cCCCCEEEEEeCCCCcc----chh-hHh
Confidence 1266789999999999999999999987 57899999999998851 122 234
Q ss_pred HcCCCHHHHHH
Q 004630 227 KVGFSHSNILR 237 (741)
Q Consensus 227 ~~G~~~~~ll~ 237 (741)
++|+|++.+..
T Consensus 290 ~aGvNlp~la~ 300 (329)
T PF15632_consen 290 AAGVNLPYLAV 300 (329)
T ss_pred hcCCChHHHHH
Confidence 67999887654
No 139
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.49 E-value=5.7e-13 Score=143.15 Aligned_cols=183 Identities=18% Similarity=0.152 Sum_probs=126.2
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|++.|+|+| .......+ +..+..+ .++||+||||..+.+|.|..+++|.+|+...+...+..+.-..+++
T Consensus 124 m~eigi~~P-~~~~~~~~----e~~~~~~-----~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~ 193 (400)
T COG0458 124 MREIGIPVP-SRIAHSVE----EADEIAD-----EIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLI 193 (400)
T ss_pred HHHcCCCCC-ccccccHH----HHhhhHh-----hcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCcccccee
Confidence 568999999 43333333 4444444 3556999999999999999999999998777766655455568999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~~~~i~ 159 (741)
||+|.|..||...++.+..++ .++... ++ -++- ...+.+. .....|+. +++...+.++
T Consensus 194 eesi~G~ke~e~ev~rd~~~n---~ivvc~--me--------------n~dp-~gvhtgd-si~vapaqtl~d~eyq~~r 252 (400)
T COG0458 194 EESIIGWKEFEYEVVRDGKDN---CIVVCN--ME--------------NLDP-MGVHTGD-SITVAPAQTLTDKEYQMLR 252 (400)
T ss_pred eeeecCceEEEEEEEEeCCCC---EEEEEe--CC--------------cccc-ccccccc-eeeeccccccccHHHHHHH
Confidence 999998899999999976543 122100 00 0110 1122222 23445654 4566677788
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHH
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSN 234 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ 234 (741)
..+.++.+.||..|-++|+|.+++ ..|++||+|+|||++ ++|.+ ..+++|+....
T Consensus 253 ~~~~~iir~igi~G~~niQ~av~~----------------~~~~~~viEvNpRvS--rssaL--askAtgypia~ 307 (400)
T COG0458 253 DAAIKVIREIGIEGGCNIQFAVDP----------------GGGELYVIEINPRVS--RSSAL--ASKATGYPIAK 307 (400)
T ss_pred HHHHHHHHHhcccCCCceeEEEcC----------------CCceEEEEEecCCcC--cchhh--hhhccCChHHH
Confidence 899999999999999999999842 347999999999776 55543 33556754433
No 140
>PRK06849 hypothetical protein; Provisional
Probab=99.47 E-value=4.1e-13 Score=149.65 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=104.1
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
++++|||+|++..+.+.+ ++.++..+ ..+||+|+||..+++|.|+.++.+.+++ ... ......++||
T Consensus 124 ~~~~GipvP~t~~v~~~~----~l~~~~~~----~~~~P~vlKP~~~~~~~~v~~~~~~~~l-~~~----~~~~~~~~iv 190 (389)
T PRK06849 124 ARSLGLSVPKTYLITDPE----AIRNFMFK----TPHTPYVLKPIYSRFVRRVDLLPKEAAL-KEL----PISKDNPWVM 190 (389)
T ss_pred HHHcCCCCCCEEEeCCHH----HHHHHhhc----CCCCcEEEEeCcccCCCeEEEecCHHHh-ccc----ccCCCCCeEE
Confidence 467999999999988765 55544322 1267999999999999999999885442 211 1123457999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCC-CeEEEcCCCCCHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ-QVAYHTPPRFPIVVINSIR 159 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~P~~~~~~~~~~i~ 159 (741)
||||+| .|+++..+..+ +..++.. .|...+..+. ......|.. .++|+
T Consensus 191 Qe~I~G-~e~~~~~~~~~----G~v~~~~---------------------~~~~~~~~~~~~~~~~~~~~-----~~~l~ 239 (389)
T PRK06849 191 QEFIQG-KEYCSYSIVRS----GELRAHS---------------------CYKPEYCAGSGAQIAFQPIN-----HPRIE 239 (389)
T ss_pred EEEecC-CeEEEEEEEEC----CEEEEEE---------------------EeeccccCCCCceeEeEECC-----cHHHH
Confidence 999998 99988877531 1222211 0111111111 111112221 35788
Q ss_pred HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCC
Q 004630 160 EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214 (741)
Q Consensus 160 ~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pg 214 (741)
+.+++++++||+.|.+.+||+. +++|++|++|+|||++
T Consensus 240 ~~~~~~~~~l~~~G~~~~df~~-----------------~~~g~~~~iEiNpR~~ 277 (389)
T PRK06849 240 EFVTHFVKELNYTGQISFDFIE-----------------TENGDAYPIECNPRTT 277 (389)
T ss_pred HHHHHHHHhcCceeEEEEEEEE-----------------CCCCCEEEEEecCCCC
Confidence 9999999999999999999986 4689999999999987
No 141
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.47 E-value=5.8e-13 Score=142.82 Aligned_cols=184 Identities=15% Similarity=0.083 Sum_probs=118.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCC--CcceEEeCCHHHHHHHHHHhHhh-----C
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS--SIGVTVAYGVIDSLKKAKGIILE-----G 73 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~--S~GV~~v~~~~e~~~~~~~~~~~-----~ 73 (741)
|+++||++|+.+. +.+ .+.||+||||..+++ |+|+++++|.+|+..++.++... .
T Consensus 134 L~~aGI~~Pk~~~--~p~----------------eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~ 195 (366)
T PRK13277 134 LEKAGIPYPKLFK--DPE----------------EIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDRE 195 (366)
T ss_pred HHHcCCCCceeec--Ccc----------------ccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCccccc
Confidence 4678888888765 111 345699999999999 99999999999987776654311 1
Q ss_pred CCCeEEEeeccCCCeEEEEEEEecC-CCCccceeEecceEEEEeccCccccccCCcceecccCC------CCCCCeEEEc
Q 004630 74 IDDRVVVELFLEGGSEFTAIVLDVG-SGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKY------LPTQQVAYHT 146 (741)
Q Consensus 74 ~~~~vlVEe~i~G~~E~sv~vl~~~-~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~------~~~~~~~~~~ 146 (741)
.-..++|||||.| .||++.++-+. ++ +...+. ....++.. -+++.....+- .+........
T Consensus 196 ~~~~~iIQEyI~G-~ey~~d~F~s~l~g-~ve~l~-id~R~esn---------~dg~~r~pa~~ql~~~~~p~~vv~G~~ 263 (366)
T PRK13277 196 DLKNARIEEYVIG-AHFNFNYFYSPIRD-RLELLG-IDRRIQSN---------LDGFVRLPAPQQLKLNEEPRYIEVGHE 263 (366)
T ss_pred ccccceeEeccCC-CEEEEEEEEeccCC-cEEEEE-Eeeccccc---------cccccccChhhhhhcccCCceEEEcCc
Confidence 1145679999998 99999999642 22 111111 11111100 11122111110 0100011237
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhC------CCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCCh
Q 004630 147 PPRFPIVVINSIREGASLLFQRLG------LCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSF 220 (741)
Q Consensus 147 P~~~~~~~~~~i~~~a~~~~~aLg------~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~ 220 (741)
|..+.+.+.+++.+++++++++++ +.|...+|+++ ++++++|++|||||-|-+ ..
T Consensus 264 p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv-----------------~~d~~~~V~EInpR~gGG--tn 324 (366)
T PRK13277 264 PATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIV-----------------TPDLDFVVYDVAPRIGGG--TN 324 (366)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEE-----------------cCCCcEEEEEEcCCcCCC--cc
Confidence 777888899999999999999977 68999999887 577999999999987532 11
Q ss_pred HHHHHHHcCCCHHHHH
Q 004630 221 LFQQASKVGFSHSNIL 236 (741)
Q Consensus 221 ~~~~~~~~G~~~~~ll 236 (741)
++-.+|.+|+.++
T Consensus 325 ---l~~~aGs~y~~l~ 337 (366)
T PRK13277 325 ---VYMGVGSPYSKLY 337 (366)
T ss_pred ---ceeecCCCcHHHH
Confidence 2234577776655
No 142
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.46 E-value=1.3e-12 Score=153.83 Aligned_cols=222 Identities=20% Similarity=0.328 Sum_probs=164.6
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEE----eC------
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVR----RK------ 490 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v----~~------ 490 (741)
-.+|.||.- .|-.-|+-.++.+|...||-+.||...|+...-||...-.+ ++.+|+||.+|--- ..
T Consensus 136 ~~VdAVWaG-WGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIv---AQsa~vPtlpWSGS~v~~~~~~~~~~ 211 (2196)
T KOG0368|consen 136 TDVDAVWAG-WGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTII---AQSAGVPTLPWSGSGVKVEHIEDKTN 211 (2196)
T ss_pred cccceEeec-ccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHH---HHhcCCCcccccCCcceeeeecccCC
Confidence 357888864 45666999999999999999999999999999999999888 89999999988321 11
Q ss_pred -----ccccCC----chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCccccccc
Q 004630 491 -----EDLLKT----PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGM 561 (741)
Q Consensus 491 -----~e~~~~----~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~ 561 (741)
+|.... +.++-+++ .+.+ |||++||.+.|||++||.+|++.+|+..+++.++.
T Consensus 212 ~v~Vpedly~Kacv~~~eegLea-ae~I-GfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~---------------- 273 (2196)
T KOG0368|consen 212 LVSVPEDLYEKACVRNVEEGLEA-AEKI-GFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQN---------------- 273 (2196)
T ss_pred eEecCHHHhhhhhcCCHHHHHHH-HHhc-CCceEEEeccCCCCcceeeccchHHHHHHHHHHHh----------------
Confidence 111000 12333333 3568 69999999999999999999999998854433332
Q ss_pred ccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC-CCceecCceEEEccCCcccccccc
Q 004630 562 IEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC-GSMHSLMPSVTVKESGDILSLEEK 640 (741)
Q Consensus 562 ~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~-~~~~~~~~~~~i~~~~~~~d~~~k 640 (741)
|.| ++++.+.+..++. |.++|.+|++. |..+++.+.- -.+..--.|
T Consensus 274 -EvP---GSPIFlMK~a~~A------------------------RHlEVQlLaDqYGn~IsLfgRD-----CSiQRRhQK 320 (2196)
T KOG0368|consen 274 -EVP---GSPIFLMKLADQA------------------------RHLEVQLLADQYGNVISLFGRD-----CSIQRRHQK 320 (2196)
T ss_pred -hCC---CCceeeeecccCc------------------------ceeeeehhhhhcCCEeEeeccc-----chHHHHHHH
Confidence 223 6889999998875 79999999986 4444443321 001111111
Q ss_pred ccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCC
Q 004630 641 FQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVP 704 (741)
Q Consensus 641 y~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~P 704 (741)
. +.-+|..+.++++.+++++.|.++++.+|..+.+.|++.+.+++|++||+|.||+-
T Consensus 321 I-------IEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRL 377 (2196)
T KOG0368|consen 321 I-------IEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRL 377 (2196)
T ss_pred H-------HhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCccc
Confidence 1 22233333589999999999999999999999999999999889999999999864
No 143
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.4e-12 Score=140.35 Aligned_cols=189 Identities=14% Similarity=0.150 Sum_probs=124.5
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHH-HHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVI-DSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~-e~~~~~~~~~~~~~~~~vl 79 (741)
|.++|+|+|++....+.+ +...+.++ ..+||+|+||..|++|+||+++++.+ ++...+..+.. .....+|
T Consensus 127 l~~~~ipvP~T~i~~~~~----~~~~~~~~----~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~-~~~~~~i 197 (318)
T COG0189 127 LAKAGIPVPPTLITRDPD----EAAEFVAE----HLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQ-EGRKLII 197 (318)
T ss_pred HHhcCCCCCCEEEEcCHH----HHHHHHHH----hcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhc-cccceEe
Confidence 457899999999988864 33333332 23469999999999999999999999 87665555432 3335799
Q ss_pred EeeccCC-CeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHH
Q 004630 80 VELFLEG-GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSI 158 (741)
Q Consensus 80 VEe~i~G-~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i 158 (741)
|||||+- .++....++.+ ..+++.--.++ .+ .--++.++...++ ...|..++ +++
T Consensus 198 vQeyi~~~~~~~rrivv~~-----~~~~~~y~~~R--~~----------~~~~~R~N~a~Gg---~~e~~~l~----~e~ 253 (318)
T COG0189 198 VQEYIPKAKRDDRRVLVGG-----GEVVAIYALAR--IP----------ASGDFRSNLARGG---RAEPCELT----EEE 253 (318)
T ss_pred hhhhcCcccCCcEEEEEeC-----CEEeEEeeecc--cc----------CCCCceeeccccc---cccccCCC----HHH
Confidence 9999952 24566666642 22333100000 01 0112334444443 23344455 566
Q ss_pred HHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHH
Q 004630 159 REGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRT 238 (741)
Q Consensus 159 ~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ 238 (741)
+++|.+++++||+ +++.||++. +++| .||+|||..|+.... +.+..|.+-.+++..
T Consensus 254 ~elA~kaa~~lGl-~~~GVDiie-----------------~~~g-~~V~EVN~sP~~~~~-----i~~~~g~~~~~~~~~ 309 (318)
T COG0189 254 EELAVKAAPALGL-GLVGVDIIE-----------------DKDG-LYVTEVNVSPTGKGE-----IERVTGVNIAGLIID 309 (318)
T ss_pred HHHHHHHHHHhCC-eEEEEEEEe-----------------cCCC-cEEEEEeCCCccccc-----hhhhcCCchHHHHHH
Confidence 8899999999986 588999986 4455 899999998864331 234568888888888
Q ss_pred HHHHHHhh
Q 004630 239 IIGHACSR 246 (741)
Q Consensus 239 ii~~a~~r 246 (741)
.+....++
T Consensus 310 ~ie~~~~~ 317 (318)
T COG0189 310 AIEKFVRA 317 (318)
T ss_pred HHHHHHhc
Confidence 88776543
No 144
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.45 E-value=1e-12 Score=153.72 Aligned_cols=188 Identities=19% Similarity=0.199 Sum_probs=113.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCC---HHHHHHHHHHhHhhCCCCe
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILEGIDDR 77 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~---~~e~~~~~~~~~~~~~~~~ 77 (741)
|+++|||||++..+.+.+ +..+.+..+ .+||+||||..+++|+||+++.+ .+++.+++..++ +++..
T Consensus 483 L~~aGIPVP~g~~~~~~~----~a~~~~~~~----~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~--~~~~~ 552 (737)
T TIGR01435 483 LAEAGFRVPFGDEFSSQA----LALEAFSLF----ENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAF--SEDSS 552 (737)
T ss_pred HHHcCcCCCCEEEECCHH----HHHHHHHHh----cCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHH--hcCCe
Confidence 568999999999887654 333233222 25699999999999999999876 677766666554 35678
Q ss_pred EEEeeccCCCeEEEEEEEecCCCCccceeE-ecceEEEEeccCccccc------cCC-----c-------ce-e----c-
Q 004630 78 VVVELFLEGGSEFTAIVLDVGSGFDCHPVV-LLPTEVELQFQGSVDVR------EKD-----A-------IF-N----Y- 132 (741)
Q Consensus 78 vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~-~~~~ei~~~~~~~~~~~------~~~-----~-------~~-~----~- 132 (741)
+|||+||+| +||+|.|++ ++..+++ -.|..+. +.+.++.. ..+ + +. + +
T Consensus 553 VLVEefI~G-~EyRv~VIg----~kvvaa~~R~Pa~Vi--GDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L 625 (737)
T TIGR01435 553 VIIEEFLPG-TEYRFFVLN----DKVEAVLLRVPANVT--GDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLML 625 (737)
T ss_pred EEEEecccC-CEEEEEEEC----CeEEEEEEECCCCEE--ECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHH
Confidence 999999998 999999995 2322222 1111111 11111000 000 0 00 0 0
Q ss_pred -ccCCCC------CCCeEE---------EcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcccccccccc
Q 004630 133 -RRKYLP------TQQVAY---------HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKY 196 (741)
Q Consensus 133 -~~k~~~------~~~~~~---------~~P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~ 196 (741)
...|.. +....- -.+.++.+++....+++|+++++++|+. ++.||+++.+.+.+
T Consensus 626 ~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~di~~p--------- 695 (737)
T TIGR01435 626 KEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPDETIP--------- 695 (737)
T ss_pred HHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCCCCC---------
Confidence 000000 000000 0012356677888999999999999996 99999988432111
Q ss_pred CcCC-CCcEEEEeecCCCCCC
Q 004630 197 GSTE-WGTILFTDINLISGME 216 (741)
Q Consensus 197 r~~~-~G~~~vlEiN~~Pgl~ 216 (741)
.+. .....|||+|.+|||.
T Consensus 696 -~~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 696 -DTDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred -ccccccceEEEEEcCCcchh
Confidence 011 1225689999999985
No 145
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.44 E-value=1e-12 Score=151.62 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=113.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEE-eCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~-v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||||++..+.+.+ ++.++++++| |+||||..|++|+||++ +++.+++.+++..+. .....+|
T Consensus 305 L~~aGIpVP~~~~~~~~~----~~~~~~~~~G------~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~--~~~~~vl 372 (547)
T TIGR03103 305 VSEAGLQVPEQQLAGNGE----AVEAFLAEHG------AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKAR--QFCDRVL 372 (547)
T ss_pred HHHcCcCCCCEEEECCHH----HHHHHHHHhC------CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHH--hcCCcEE
Confidence 468999999999887544 5555655443 79999999999999997 899999876666553 3456899
Q ss_pred EeeccCCCeEEEEEEEecCCCCccceeEe-cceEEEEeccCccccc--------cCCc----------------------
Q 004630 80 VELFLEGGSEFTAIVLDVGSGFDCHPVVL-LPTEVELQFQGSVDVR--------EKDA---------------------- 128 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~~~~~~~~~~~~~-~~~ei~~~~~~~~~~~--------~~~~---------------------- 128 (741)
||+||+| +|++|.|++ ++....+. .+..+. ..+..+.. .+..
T Consensus 373 vEe~i~G-~d~Rv~Vig----g~vvaa~~R~~~~V~--GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g 445 (547)
T TIGR03103 373 LERYVPG-EDLRLVVID----FEVVAAAVRRPPEVI--GDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAG 445 (547)
T ss_pred EEEeccC-CeEEEEEEC----CEEEEEEEecCcEEE--eCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcC
Confidence 9999998 999999994 22111110 011111 10000000 0000
Q ss_pred -------------ceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccc
Q 004630 129 -------------IFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETK 195 (741)
Q Consensus 129 -------------~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~ 195 (741)
++....+.+.++ . ..++...+...+.++|+++++++|+. ++.||+++.+.
T Consensus 446 ~~~~~V~~~G~~v~l~~~~Nl~tGg-~----~~dvtd~~~~~~~~~A~~aa~~~gl~-~~GvD~i~~~~----------- 508 (547)
T TIGR03103 446 LDLDDVLPEGQRLRVRRTANLHTGG-T----IHDVTEQLHPDLREAAERAARALDIP-VVGIDFLVPDV----------- 508 (547)
T ss_pred CCccccCCCCCEEEEecCCcccCCC-e----eEecccccCHHHHHHHHHHHHHhCCC-eEEEEEEeccC-----------
Confidence 000011111121 1 11245567788899999999999986 99999987311
Q ss_pred cCcCCCCcEEEEeecCCCCCCCC
Q 004630 196 YGSTEWGTILFTDINLISGMEQT 218 (741)
Q Consensus 196 ~r~~~~G~~~vlEiN~~Pgl~~~ 218 (741)
......|||+|.+|||..+
T Consensus 509 ----~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 509 ----TGPDYVIIEANERPGLANH 527 (547)
T ss_pred ----CCCCeEEEEecCCcccccc
Confidence 1223689999999999754
No 146
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.41 E-value=9.2e-12 Score=132.84 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=110.9
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCc-cEEEecCCCCCCcceEEeCCHHH---------------HHH
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGSSIGVTVAYGVID---------------SLK 64 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-P~VvKP~~~~~S~GV~~v~~~~e---------------~~~ 64 (741)
|+++|||||.+..+.+.+...+++.+++. ++ |+|+||..|+.|+||.++++.++ +..
T Consensus 45 L~~aglpvP~T~~~~s~~~~~~~l~~~~~-------~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~ 117 (317)
T TIGR02291 45 AQAAGITVPELYGVIHNQAEVKTIHNIVK-------DHPDFVIKPAQGSGGKGILVITSRKDGRYRKPSGATINKEEIER 117 (317)
T ss_pred HHHcCCCCCCEEEecCchhhHHHHHHHHc-------cCCCEEEEECCCCCccCeEEEEeccccccccccccccchHHHHH
Confidence 46799999998877766544444554432 23 69999999999999999876533 212
Q ss_pred HHH----HhHhh-CCCCeEEEeeccCCC-----------eEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCc
Q 004630 65 KAK----GIILE-GIDDRVVVELFLEGG-----------SEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDA 128 (741)
Q Consensus 65 ~~~----~~~~~-~~~~~vlVEe~i~G~-----------~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~ 128 (741)
.+. .++.. ...+.+++|+++..+ +.+.|.++.+ + +++. +..... .
T Consensus 118 ~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~----~--~vaa----~~R~~~---------~ 178 (317)
T TIGR02291 118 HVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG----Y--PVMA----MMRLPT---------R 178 (317)
T ss_pred HHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC----E--EEEE----EEEccC---------c
Confidence 122 22211 112246676654432 5788888842 1 2220 110000 0
Q ss_pred ceecccCCCCCCCeE-------------------EEcCC------CCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecC
Q 004630 129 IFNYRRKYLPTQQVA-------------------YHTPP------RFPIVVINSIREGASLLFQRLGLCDFARIDGWFLP 183 (741)
Q Consensus 129 ~~~~~~k~~~~~~~~-------------------~~~P~------~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~ 183 (741)
--++..+++.++... ...|. .+..+..+++.++|.++++++|+ +++++|+++
T Consensus 179 ~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~-- 255 (317)
T TIGR02291 179 ASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVL-- 255 (317)
T ss_pred cCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEE--
Confidence 000111222221000 00111 13335567899999999999998 999999987
Q ss_pred CCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 184 SSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 184 ~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
+.+|.++|+|+|+.|||+ ++.+..+|++..
T Consensus 256 ---------------~~~~g~~VlEVN~~Pg~t-----~~~a~~~Gl~~~ 285 (317)
T TIGR02291 256 ---------------DKEEGPLVLELNARPGLA-----IQIANGAGLLPR 285 (317)
T ss_pred ---------------eCCCCEEEEEeCCCCCCC-----HHHHHHCCCcHH
Confidence 446679999999999998 677888999753
No 147
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.38 E-value=3.6e-12 Score=151.29 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=66.1
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEe---CCHHHHHHHHHHhHhhCCCCe
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVA---YGVIDSLKKAKGIILEGIDDR 77 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v---~~~~e~~~~~~~~~~~~~~~~ 77 (741)
|+++|||||++..+.+.+ ++.+.+... .+||+||||..+++|+||+++ ++.+++.+++..++ .+++.
T Consensus 496 L~~~GIpvP~~~~~~~~e----~a~~~~~~~----~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~--~~~~~ 565 (752)
T PRK02471 496 LAEAGFPVPAGDEFTSLE----EALADYSLF----ADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAF--REDSS 565 (752)
T ss_pred HHHCCcCCCCEEEEcCHH----HHHHHHHHh----cCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHH--hcCCc
Confidence 468999999999887644 443333321 356999999999999999986 46777777766654 35678
Q ss_pred EEEeeccCCCeEEEEEEEe
Q 004630 78 VVVELFLEGGSEFTAIVLD 96 (741)
Q Consensus 78 vlVEe~i~G~~E~sv~vl~ 96 (741)
+||||||+| +||+|.|++
T Consensus 566 vlVEEfI~G-~E~Rv~Vig 583 (752)
T PRK02471 566 VLVEEFIVG-TEYRFFVLD 583 (752)
T ss_pred EEEEecccC-CEEEEEEEC
Confidence 999999998 999999994
No 148
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.36 E-value=5.5e-12 Score=153.04 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=69.3
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEE-eCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~-v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||+|++..+.+.+ ++.++++++ +||+||||..+++|+||.+ +++.+++.+++..+.. ....+|
T Consensus 221 L~~~GIpvP~~~~~~s~~----ea~~~~~~i-----g~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~--~~~~vl 289 (864)
T TIGR02068 221 LSDAGVPVPEGTVVQSAE----DAWEAAQDL-----GYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVE--ESSGVI 289 (864)
T ss_pred HHHcCcCCCCEEEECCHH----HHHHHHHHc-----CCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHh--hCCcEE
Confidence 568999999999887655 666666554 4599999999999999998 9999998777665542 456899
Q ss_pred EeeccCCCeEEEEEEEe
Q 004630 80 VELFLEGGSEFTAIVLD 96 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~ 96 (741)
||+||+| +||+|.|++
T Consensus 290 VEefI~G-~e~rvlVv~ 305 (864)
T TIGR02068 290 VERFITG-RDHRLLVVG 305 (864)
T ss_pred EEEeccC-CEEEEEEEC
Confidence 9999998 999999984
No 149
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.35 E-value=8.6e-12 Score=148.61 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=68.7
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEE-eCCHHHHHHHHHHhHhhCCCCeEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTV-AYGVIDSLKKAKGIILEGIDDRVV 79 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~-v~~~~e~~~~~~~~~~~~~~~~vl 79 (741)
|+++|||+|++..+.+.+ ++.++++++ +||+||||..+++|+||.+ +++.+++.+++..+. .....+|
T Consensus 222 L~~~GIPvP~~~~v~s~~----~a~~~a~~i-----G~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~--~~~~~vi 290 (727)
T PRK14016 222 LAAAGVPVPEGRVVTSAE----DAWEAAEEI-----GYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVAS--KESSDVI 290 (727)
T ss_pred HHHCCcCCCCeeEeCCHH----HHHHHHHHc-----CCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHH--HhCCeEE
Confidence 467999999999887655 666666554 4599999999999999997 999999876665543 2457899
Q ss_pred EeeccCCCeEEEEEEEe
Q 004630 80 VELFLEGGSEFTAIVLD 96 (741)
Q Consensus 80 VEe~i~G~~E~sv~vl~ 96 (741)
||+||+| +||+|.|++
T Consensus 291 VEe~I~G-~d~Rv~Vvg 306 (727)
T PRK14016 291 VERYIPG-KDHRLLVVG 306 (727)
T ss_pred EEEecCC-ceEEEEEEC
Confidence 9999998 999999984
No 150
>PRK12458 glutathione synthetase; Provisional
Probab=99.30 E-value=1.3e-10 Score=126.68 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=122.3
Q ss_pred CccEEEEccCCCCCCch--HHH-------HHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCcc
Q 004630 422 NQATVFIAVHGGIGEDG--TLQ-------SLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKED 492 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg--~iq-------~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e 492 (741)
.+|+||+--...+-.++ .+. .++|..|++++ +++.+...|.||..+..+ ++ +++|++......
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l---~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSF---PE---EVRPTTHISRNK- 150 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhh---cc---CCCCCEEEeCCH-
Confidence 46899987644443322 122 34467898776 778999999999999765 33 678888766432
Q ss_pred ccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccc--hHHHHHHHHHHHhcCCCCCcccccccccCCCCCCC
Q 004630 493 LLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAED--LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 570 (741)
Q Consensus 493 ~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~e--L~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~ 570 (741)
+.+.++.+++++.|+|+||..+.+|.||.++++.+. +.. .++ .+.. ..
T Consensus 151 -------~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~---ile-~~~~-------------------~~ 200 (338)
T PRK12458 151 -------EYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQ---ILE-FYSG-------------------DG 200 (338)
T ss_pred -------HHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHH---HHH-HHhh-------------------CC
Confidence 223444556632359999999999999999986664 332 222 2211 25
Q ss_pred eEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecC---ceE-EEccCCccccccccccCCCc
Q 004630 571 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLM---PSV-TVKESGDILSLEEKFQGGTG 646 (741)
Q Consensus 571 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~---~~~-~i~~~~~~~d~~~ky~~g~~ 646 (741)
.+|+|+||++.. + .++.+.++++. ..... +.+ ++...+ +++.....|..
T Consensus 201 ~~ivQeyI~~~~-----------------~-----gDiRv~vv~g~--~v~~~g~~~a~~R~~~~~---d~RsN~~~Gg~ 253 (338)
T PRK12458 201 YVIAQEYLPGAE-----------------E-----GDVRILLLNGE--PLERDGHYAAMRRVPAGG---DVRSNVHAGGS 253 (338)
T ss_pred CEEEEEcccCCC-----------------C-----CCEEEEEECCE--EEeeccceeEEEEecCCC---CeeecccCCCc
Confidence 799999998630 1 27777777653 11000 222 222122 34433333322
Q ss_pred eEEcCCCCCCCCHHHHHHHHHHHHHHHHHc---CCcceeEEEEEEEcCCCcEEEEecCC-CCC
Q 004630 647 INLTPPPASIMSTEALDKCKQRIELIANAL---QLEGFSRIDAFVNVDNGEVLIIEVNT-VPG 705 (741)
Q Consensus 647 ~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL---g~~G~~rvDf~v~~~~g~~~viEINt-~Pg 705 (741)
..+.. ++ ++++++|.++..+| |+. +++||++ . + +|+|||+ .||
T Consensus 254 --~~~~~---l~----~~~~~ia~~~~~~l~~~GL~-~~gVDli-~---~--~l~EIN~~sp~ 300 (338)
T PRK12458 254 --VVKHT---LT----KEELELCEAIRPKLVRDGLF-FVGLDIV-G---D--KLVEVNVFSPG 300 (338)
T ss_pred --ccCcC---CC----HHHHHHHHHHHHHHhhcCCe-EEeEEEE-C---C--EEEEEeCCCcc
Confidence 22332 34 45566777776666 553 8999985 2 2 5899997 474
No 151
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.30 E-value=1.5e-11 Score=145.09 Aligned_cols=218 Identities=16% Similarity=0.183 Sum_probs=154.2
Q ss_pred CCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEE
Q 004630 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL 115 (741)
Q Consensus 36 ~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~ 115 (741)
++||++||...||+|+||.+|++.++.....++...+-.+++++|=+...+.|++.|.++.|.-|+ ++..-+
T Consensus 238 IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~ARHlEVQlLaDqYGn----~IsLfg---- 309 (2196)
T KOG0368|consen 238 IGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQARHLEVQLLADQYGN----VISLFG---- 309 (2196)
T ss_pred cCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhhCCCCceeeeecccCcceeeeehhhhhcCC----EeEeec----
Confidence 667999999999999999999999998777776665567889999999998999999999875543 221111
Q ss_pred eccCccccccCCcceecccCCCCCCCeEEEcCCCC-CHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCcccccccc
Q 004630 116 QFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRF-PIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSET 194 (741)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~-~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~ 194 (741)
+-|+.+.+++.- ....|+.+ +.++.+++++.|.++++..|+.+.+.|+.++.+
T Consensus 310 ------------RDCSiQRRhQKI---IEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp----------- 363 (2196)
T KOG0368|consen 310 ------------RDCSIQRRHQKI---IEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSP----------- 363 (2196)
T ss_pred ------------ccchHHHHHHHH---HhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEec-----------
Confidence 123333222211 12245544 778999999999999999999999999999843
Q ss_pred ccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHHH-HHHHhhCC-------------------CCCCCC
Q 004630 195 KYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII-GHACSRFP-------------------NLASYN 254 (741)
Q Consensus 195 ~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ii-~~a~~r~~-------------------~~~~~~ 254 (741)
++|++||+|+|||-.... |...--+|+|.+..-..|- ..-+.|.+ +.+.+.
T Consensus 364 -----~d~~fyFLELNPRLQVEH----P~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lYg~~~~GdS~idfe~~~~p~ 434 (2196)
T KOG0368|consen 364 -----DDGEYYFLELNPRLQVEH----PTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLYGLEPTGDSPIDFENAKLPC 434 (2196)
T ss_pred -----CCCcEEEEecCccccccC----CchhhhhcCCccHHHHHHHhCCchhhchHHHHHcCCCCCCCCCCChhhccCCC
Confidence 589999999999988864 1111123555443322210 11112211 112333
Q ss_pred CccccCCCCCCCCCCccccccccCceEEEEEecCCccceeeeeccHHHHHHhhh
Q 004630 255 SVSSHLPGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQ 308 (741)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S~E~~vSl~sa~~v~~~l~ 308 (741)
+.+|-+-.||..++|+..|.|+.|+ =||+++.|-.+||..+.
T Consensus 435 pkgHciA~RITsEdPddgFkPSsG~------------v~eLnFrSssnvWgYFS 476 (2196)
T KOG0368|consen 435 PKGHCIAARITSEDPDDGFKPSSGT------------VQELNFRSSSNVWGYFS 476 (2196)
T ss_pred CCceEEEEEeeccCCCCCcCCCCCe------------eEEeccCCCCCeeEEEE
Confidence 4467788899999999999999986 37889999888886554
No 152
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.29 E-value=9.1e-11 Score=128.82 Aligned_cols=209 Identities=18% Similarity=0.212 Sum_probs=150.6
Q ss_pred HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEec
Q 004630 439 TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKP 518 (741)
Q Consensus 439 ~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP 518 (741)
.|.+.|...|||+.|++..++++-.+|.++|.+ |.++||||+.|..+...+. ...+.......++|||.
T Consensus 83 Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~f---m~r~~IPTA~y~~ft~~e~--------a~sfi~~~~~~~~ViKA 151 (788)
T KOG0237|consen 83 GLADVLRSAGIPCFGPSKQAAQLEASKNFSKDF---MHRHNIPTAKYKTFTDPEE--------AKSFIQSATDKALVIKA 151 (788)
T ss_pred hhhhhhhccCcceeCchHHHHHhhhhHHHHHHH---HHhcCCCcceeeeeCCHHH--------HHHHHHhCCCcceEEee
Confidence 466788899999999999999999999999999 9999999999999986541 23334444236799999
Q ss_pred CCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhh
Q 004630 519 ARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLM 598 (741)
Q Consensus 519 ~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~ 598 (741)
.-...++||.+..+.+|.- +|++..+.. ..++. ....++|||+++|+
T Consensus 152 dGLAAGKGViv~~~~~EA~---eAv~sIl~~---~~fg~----------AG~tvViEE~LEGe----------------- 198 (788)
T KOG0237|consen 152 DGLAAGKGVIVAKSKEEAF---EAVDSILVK---KVFGS----------AGKTVVIEELLEGE----------------- 198 (788)
T ss_pred cccccCCceEeeccHHHHH---HHHHHHHhh---hhhcc----------ccceEehhhhcCcc-----------------
Confidence 9999999999988766644 566665432 11121 25789999999998
Q ss_pred hcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHH-HHHHHHHc-
Q 004630 599 WKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQR-IELIANAL- 676 (741)
Q Consensus 599 ~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~-a~~~~~aL- 676 (741)
|+++-.+.++.....++|.... ...++-+-.-+.|.+..++|+|. .++++++.+++. .++..+-|
T Consensus 199 --------EvS~laftDG~s~~~mp~aQDH---KRl~dgD~GpNTGgmGaY~paPv--~s~~ll~~v~~~I~~~Tv~Gm~ 265 (788)
T KOG0237|consen 199 --------EVSFLAFTDGYSVRPLPPAQDH---KRLGDGDTGPNTGGMGAYAPAPV--ASPKLLDTVQSTIIEPTVDGMA 265 (788)
T ss_pred --------eEEEEEEecCcccccCCcccch---hhhcCCCCCCCCCCccccccCCc--cCHHHHHHHHHHHhhHhhhHHH
Confidence 9999888876666666665422 23444444445555666889886 578877776653 34444443
Q ss_pred --C--CcceeEEEEEEEcCCCcEEEEecCCCCCC
Q 004630 677 --Q--LEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706 (741)
Q Consensus 677 --g--~~G~~rvDf~v~~~~g~~~viEINt~Pg~ 706 (741)
| +.|+...-+++++ +| +.++|.|-+=|=
T Consensus 266 ~eg~~y~GVLfaGlMl~k-~~-P~vLEfN~RFGD 297 (788)
T KOG0237|consen 266 EEGIPYVGVLFAGLMLTK-DG-PKVLEFNVRFGD 297 (788)
T ss_pred hcCCceeeEEeeeeEEec-CC-ccEEEEecccCC
Confidence 3 3466667778884 44 999999987653
No 153
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.26 E-value=9.1e-11 Score=119.58 Aligned_cols=209 Identities=16% Similarity=0.159 Sum_probs=132.8
Q ss_pred EEccCCCCCCch----HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHH
Q 004630 427 FIAVHGGIGEDG----TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIW 502 (741)
Q Consensus 427 f~~lhG~~GEdg----~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~ 502 (741)
|+++.++.||-- ...+|-+.+.||| ++..-....-+|-...+. +.+.|+|.|+++.+++..
T Consensus 75 ~LLva~GDgev~lvSq~reeLSa~f~v~l--p~w~~l~wlceKPllY~r---a~elgl~~P~Ty~v~S~~---------- 139 (415)
T COG3919 75 YLLVACGDGEVLLVSQYREELSAFFEVPL--PDWALLRWLCEKPLLYNR---AEELGLPYPKTYLVNSEI---------- 139 (415)
T ss_pred eEEEecCCceeeehHhhHHHHHHHhcCCC--CcHHHHHHHhhCcHHHHH---HHHhCCCCcceEEecchh----------
Confidence 444455556532 4456677888987 467777777788888777 899999999999998542
Q ss_pred HHHHhhcCCCcEEEecCCCCC--CcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 503 HELTSKLQCKTLCVKPARDGC--STGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 503 ~~~~~~lg~~PvvVKP~~~gs--S~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
+....++ .||+|+||..+|| +.+-.++-..++-+++..|+..+.+.+ .++.++||+||+|
T Consensus 140 d~~~~el-~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei-----------------gpDnvvvQe~IPG 201 (415)
T COG3919 140 DTLVDEL-TFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEI-----------------GPDNVVVQEFIPG 201 (415)
T ss_pred hhhhhhe-eeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhc-----------------CCCceEEEEecCC
Confidence 2234577 7999999999885 344444444444444445666665542 1588999999998
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHH
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTE 660 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e 660 (741)
- ++ ..++-..+-+++..+...-..+.. .|...+--+.+..+.| +
T Consensus 202 G---------gE-------------~qfsyaAlw~~g~pvaeftarr~r------qyPvdfgytst~vevv------D-- 245 (415)
T COG3919 202 G---------GE-------------NQFSYAALWDKGHPVAEFTARRLR------QYPVDFGYTSTVVEVV------D-- 245 (415)
T ss_pred C---------Cc-------------ccchHHHHHhCCCchhhhhcchhh------cCCcccccccEEEEec------C--
Confidence 4 11 023333333333322111111111 1111111112222232 1
Q ss_pred HHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCC
Q 004630 661 ALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPG 705 (741)
Q Consensus 661 ~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg 705 (741)
.+++.+.|++..+.++..|++.+||..|..||...++|||++|+
T Consensus 246 -n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvNpRpw 289 (415)
T COG3919 246 -NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVNPRPW 289 (415)
T ss_pred -cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeecCCCc
Confidence 24566777888888999999999999999999999999999997
No 154
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.26 E-value=3e-10 Score=122.79 Aligned_cols=201 Identities=14% Similarity=0.121 Sum_probs=123.4
Q ss_pred CccEEEEccCCCCCCch----HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCc
Q 004630 422 NQATVFIAVHGGIGEDG----TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 497 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEdg----~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~ 497 (741)
.+|+||+--...+-+.- .+-..+|..|++++ +++.+...|.||.++.++ + .++|++....+.
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~---~----~~vP~T~v~~~~------ 143 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQF---P----KVIPPTLVTRDK------ 143 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhC---c----CCCCCEEEeCCH------
Confidence 47999988655544332 56677888999876 668999999999999775 3 279998765432
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-cchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEee
Q 004630 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576 (741)
Q Consensus 498 ~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEe 576 (741)
+.+.++.++. + |+|+||..++++.||.+++.. .++....+.+. .. ....+++|+
T Consensus 144 --~~~~~~~~~~-g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~---~~------------------~~~~~~vQ~ 198 (312)
T TIGR01380 144 --AEIRAFLAEH-G-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT---QR------------------GREPVMAQR 198 (312)
T ss_pred --HHHHHHHHHc-C-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH---hc------------------cCCcEEEEe
Confidence 2234555667 3 999999999999999998753 33432221211 11 035799999
Q ss_pred cccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCc-eEEEccCCccccccccccCCCceEEcCCCCC
Q 004630 577 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP-SVTVKESGDILSLEEKFQGGTGINLTPPPAS 655 (741)
Q Consensus 577 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~-~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~ 655 (741)
||+.. .+ .++++.++++. +.+ .+...+..+ +++.....|.. ..|..
T Consensus 199 yI~~~------------------~~----~D~Rv~vv~g~-----vv~~ai~R~~~~g--d~r~N~~~Gg~--~~~~~-- 245 (312)
T TIGR01380 199 YLPEI------------------KE----GDKRILLIDGE-----PIGAAVARIPAGG--EFRGNLAVGGR--GEATE-- 245 (312)
T ss_pred ccccc------------------cC----CCEEEEEECCe-----EEEEEEEecCCCC--CccccccCCce--eeccC--
Confidence 99742 00 28888888753 222 232222211 34434333332 33333
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCC
Q 004630 656 IMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703 (741)
Q Consensus 656 ~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~ 703 (741)
++++. .++.+.+..+++++|+. |++||++ | .||+|||..
T Consensus 246 -l~~e~-~~ia~~~~~~~~~~gl~-~agVDii-----g-~~v~EvN~~ 284 (312)
T TIGR01380 246 -LSERD-REICADVAPELKRRGLL-FVGIDVI-----G-GYLTEVNVT 284 (312)
T ss_pred -CCHHH-HHHHHHHHHHHHhcCCc-EEEEEEe-----C-CEEEEEecC
Confidence 34432 23333333334666764 9999986 2 379999975
No 155
>PRK05246 glutathione synthetase; Provisional
Probab=99.23 E-value=1.8e-09 Score=117.05 Aligned_cols=198 Identities=14% Similarity=0.182 Sum_probs=122.2
Q ss_pred CccEEEEccCCCCCC----chHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCc
Q 004630 422 NQATVFIAVHGGIGE----DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTP 497 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GE----dg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~ 497 (741)
.+|+||+-..-.+.+ ...+-..+|..|++++. ++.+...+.||..+.++ +. ++|++......
T Consensus 79 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N-~p~~l~~~~dK~~~~~l---~~----~vP~T~~~~~~------ 144 (316)
T PRK05246 79 DFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVN-KPQSLRDANEKLFTLWF---PE----LMPPTLVTRDK------ 144 (316)
T ss_pred cCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEEC-CHHHHHhCccHHHHHhh---hc----cCCCEEEeCCH------
Confidence 379999765444443 12456677878998764 57889999999999875 33 78888765532
Q ss_pred hhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCC-ccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEee
Q 004630 498 IVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCC-AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEP 576 (741)
Q Consensus 498 ~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~-~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEe 576 (741)
+.+.++.++. + |+|+||..++++.||.+++. ..++....+.+.. . ....+++|+
T Consensus 145 --~~~~~~~~~~-~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~---~------------------~~~~~lvQ~ 199 (316)
T PRK05246 145 --AEIRAFRAEH-G-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE---H------------------GREPVMAQR 199 (316)
T ss_pred --HHHHHHHHHC-C-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH---c------------------cCCeEEEEe
Confidence 2334555666 3 99999999999999999954 3444422222211 1 036899999
Q ss_pred cccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCc-eE-EEccCCccccccccccCCCceEEcCCCC
Q 004630 577 FVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMP-SV-TVKESGDILSLEEKFQGGTGINLTPPPA 654 (741)
Q Consensus 577 fI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~-~~-~i~~~~~~~d~~~ky~~g~~~~~~Pa~~ 654 (741)
||+... + .++++-++++. +.+ .+ ++...+ +|......|.. ..|..
T Consensus 200 ~I~~~~-----------------~-----~D~Rv~vv~g~-----vv~~a~~R~~~~~---~~rtN~~~Gg~--~~~~~- 246 (316)
T PRK05246 200 YLPEIK-----------------E-----GDKRILLVDGE-----PVGYALARIPAGG---ETRGNLAAGGR--GEATP- 246 (316)
T ss_pred ccccCC-----------------C-----CCEEEEEECCE-----EhhheeEecCCCC---CcccCccCCce--EeccC-
Confidence 997630 1 27788888532 222 22 322222 34444433332 33443
Q ss_pred CCCCHHHHHHHHHHHHHHH---HHcCCcceeEEEEEEEcCCCcEEEEecCCC-C
Q 004630 655 SIMSTEALDKCKQRIELIA---NALQLEGFSRIDAFVNVDNGEVLIIEVNTV-P 704 (741)
Q Consensus 655 ~~l~~e~~~~i~~~a~~~~---~aLg~~G~~rvDf~v~~~~g~~~viEINt~-P 704 (741)
++++ .+++|.+++ +.+|+. +++||++ |. ||+|||.. |
T Consensus 247 --l~~~----~~~ia~~~~~~l~~~gl~-~~GVDli-----~~-~l~EvN~~~p 287 (316)
T PRK05246 247 --LTER----DREICAAIGPELKERGLI-FVGIDVI-----GD-YLTEINVTSP 287 (316)
T ss_pred --CCHH----HHHHHHHHHHHHHHhCCC-EEEEEEe-----CC-EEEEEeCCCc
Confidence 3443 344555555 556654 8999986 11 79999964 5
No 156
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=99.22 E-value=3.1e-10 Score=124.68 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=133.9
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhh----CCCC
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILE----GIDD 76 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~----~~~~ 76 (741)
|.+|||||+.|..+++.+ ++..++++..+ .++|||.....+++||.+..+.+|+.+++.+++.. +.+.
T Consensus 116 m~r~~IPTA~y~~ft~~e----~a~sfi~~~~~----~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~ 187 (788)
T KOG0237|consen 116 MHRHNIPTAKYKTFTDPE----EAKSFIQSATD----KALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGK 187 (788)
T ss_pred HHhcCCCcceeeeeCCHH----HHHHHHHhCCC----cceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccc
Confidence 568999999999999887 67777765543 36999999999999999999999999999988742 2457
Q ss_pred eEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCC-CCHHHH
Q 004630 77 RVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPR-FPIVVI 155 (741)
Q Consensus 77 ~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~-~~~~~~ 155 (741)
.++|||+++| .|+|+..+.|+... ..+++.+ | .+++++-+...+.++ +...+|++ .++++.
T Consensus 188 tvViEE~LEG-eEvS~laftDG~s~----~~mp~aQ---------D---HKRl~dgD~GpNTGg-mGaY~paPv~s~~ll 249 (788)
T KOG0237|consen 188 TVVIEELLEG-EEVSFLAFTDGYSV----RPLPPAQ---------D---HKRLGDGDTGPNTGG-MGAYAPAPVASPKLL 249 (788)
T ss_pred eEehhhhcCc-ceEEEEEEecCccc----ccCCccc---------c---hhhhcCCCCCCCCCC-ccccccCCccCHHHH
Confidence 9999999998 99999999764321 2233321 1 345666555555555 44556665 456666
Q ss_pred HHHH-HHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChH
Q 004630 156 NSIR-EGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFL 221 (741)
Q Consensus 156 ~~i~-~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~ 221 (741)
+.++ ++.++..+.|--+|+-.+.+++. +++++++| |.++|.|-|-|=-.+..+
T Consensus 250 ~~v~~~I~~~Tv~Gm~~eg~~y~GVLfa------------GlMl~k~~-P~vLEfN~RFGDPEtQv~ 303 (788)
T KOG0237|consen 250 DTVQSTIIEPTVDGMAEEGIPYVGVLFA------------GLMLTKDG-PKVLEFNVRFGDPETQVL 303 (788)
T ss_pred HHHHHHHhhHhhhHHHhcCCceeeEEee------------eeEEecCC-ccEEEEecccCCchhhhh
Confidence 6664 46667888887777777777663 57888888 999999998774444433
No 157
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.19 E-value=4e-11 Score=122.12 Aligned_cols=174 Identities=18% Similarity=0.171 Sum_probs=112.4
Q ss_pred ccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCC--Ccc---eEEeCCHHHHHHHHHHhHhhCCCC
Q 004630 2 SKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS--SIG---VTVAYGVIDSLKKAKGIILEGIDD 76 (741)
Q Consensus 2 ~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~--S~G---V~~v~~~~e~~~~~~~~~~~~~~~ 76 (741)
++.|+|.|..+.+++.. +.. . +.+.||+|+||..+++ +.+ +..+.|.+|+..+......+...+
T Consensus 123 ~elgl~~P~Ty~v~S~~----d~~--~-----~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpD 191 (415)
T COG3919 123 EELGLPYPKTYLVNSEI----DTL--V-----DELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPD 191 (415)
T ss_pred HHhCCCCcceEEecchh----hhh--h-----hheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCC
Confidence 46899999999998654 211 1 3567799999999885 222 244677788666655555555678
Q ss_pred eEEEeeccCCCeE--EEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHH
Q 004630 77 RVVVELFLEGGSE--FTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVV 154 (741)
Q Consensus 77 ~vlVEe~i~G~~E--~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~ 154 (741)
.++|||||+||-| |+...+- ++++|++--. ......|...+--++ +...+|.
T Consensus 192 nvvvQe~IPGGgE~qfsyaAlw----~~g~pvaeft---------------arr~rqyPvdfgyts-t~vevvD------ 245 (415)
T COG3919 192 NVVVQEFIPGGGENQFSYAALW----DKGHPVAEFT---------------ARRLRQYPVDFGYTS-TVVEVVD------ 245 (415)
T ss_pred ceEEEEecCCCCcccchHHHHH----hCCCchhhhh---------------cchhhcCCccccccc-EEEEecC------
Confidence 9999999998655 3333332 2334553111 111222221111111 2333432
Q ss_pred HHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 155 ~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
.+++.+.|+++++..+..|...+||.+++ .||...++||||||+ .++++ ..++|++..
T Consensus 246 n~Q~i~aar~~L~si~htGlvevefK~D~----------------RDGs~KlldvNpRpw--~wfgl---~taaG~nLg 303 (415)
T COG3919 246 NQQVIQAARDFLESIEHTGLVEVEFKYDP----------------RDGSYKLLDVNPRPW--RWFGL---VTAAGYNLG 303 (415)
T ss_pred cHHHHHHHHHHHHhhcccceEEEEEEecC----------------CCCceeEEeecCCCc--ceeeE---Eeccccccc
Confidence 36678889999999999999999999863 689999999999998 33332 456688654
No 158
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.19 E-value=5.2e-10 Score=120.32 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=107.9
Q ss_pred CCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCC---CCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEee
Q 004630 6 FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA---GSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVEL 82 (741)
Q Consensus 6 Ip~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~---~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe 82 (741)
||+|+++.+.+.+.+.....+ . ...+||+|+||..+ +.|+++.++.+.+++.. ...++++||
T Consensus 127 i~~P~t~v~~~~~~al~~~~~-~-----~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~---------l~~p~~lQE 191 (328)
T PLN02941 127 VGVPKQLVVYDDESSIPDAVA-L-----AGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK---------LEPPLVLQE 191 (328)
T ss_pred CCCCCEEEEcCHHHHHHHHHH-H-----hcCCCCEEEeecccCCCccccceEEecCHHHHHh---------cCCcEEEEE
Confidence 999999999876521111111 1 24677999999998 67999999999988542 234799999
Q ss_pred cc-CCCeEEEEEEEecCCCCccceeEecceEEEEecc-C--ccccccCCcceecc--cCCCCCCCeEE---EcCCCCCHH
Q 004630 83 FL-EGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ-G--SVDVREKDAIFNYR--RKYLPTQQVAY---HTPPRFPIV 153 (741)
Q Consensus 83 ~i-~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~-~--~~~~~~~~~~~~~~--~k~~~~~~~~~---~~P~~~~~~ 153 (741)
|| .||+.|.|-|++ +.. .+. . + ... + .-+.+-..+.+.|. .+...+..... .-|...+..
T Consensus 192 fVnh~g~d~RVfVvG----d~v--~~~---~-R-~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p 260 (328)
T PLN02941 192 FVNHGGVLFKVYVVG----DYV--KCV---R-R-FSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELP 260 (328)
T ss_pred ecCCCCEEEEEEEEC----CEE--EEE---E-e-cCCcccccccccccccccccccccccccccccccccccccccccCC
Confidence 99 345999999995 321 110 0 1 000 0 00000001112111 11111110000 001111112
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHH
Q 004630 154 VINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHS 233 (741)
Q Consensus 154 ~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~ 233 (741)
..+.+.++|.++.++||+. ++.||++.+. +.++.++|+|||..||+..-. +|.
T Consensus 261 ~~~~l~~La~~~r~alGl~-l~GvDvI~~~---------------~~~~~~~VidVN~fP~~k~~p-----------~~~ 313 (328)
T PLN02941 261 PRPFLEDLARELRRRLGLR-LFNFDMIREH---------------GTGDRYYVIDINYFPGYAKMP-----------GYE 313 (328)
T ss_pred ChHHHHHHHHHHHHHhCCc-eEEEEEEeec---------------CCCCceEEEEecCCCccccCC-----------chH
Confidence 2356899999999999975 9999998631 112468999999999976532 344
Q ss_pred HHHHHHHHHHHh
Q 004630 234 NILRTIIGHACS 245 (741)
Q Consensus 234 ~ll~~ii~~a~~ 245 (741)
+++...+.+.++
T Consensus 314 ~~l~~~~~~~~~ 325 (328)
T PLN02941 314 TVLTDFLLSLVQ 325 (328)
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 159
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.17 E-value=2.5e-10 Score=118.42 Aligned_cols=197 Identities=22% Similarity=0.220 Sum_probs=127.7
Q ss_pred HHhccCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHH-HHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccC
Q 004630 417 KLAKENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVM-ASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLK 495 (741)
Q Consensus 417 ~~~~~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~-asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~ 495 (741)
+...+.+|+.+.-+.|..-.+-+. .++.++.|+++. ...-+.+|..+.+- +...|+|-|+...+..
T Consensus 78 ~~~~~dvD~~ii~~sg~e~l~~~g-----~~~~~v~~n~P~~~v~~~snk~~~~r~---l~~lgmp~p~~~~~e~----- 144 (389)
T COG2232 78 EDLAEDVDAPIIPFSGFEALRTSG-----ELGCEVAGNEPEVKVVEASNKLKFYRK---LEVLGMPEPSEKKIEP----- 144 (389)
T ss_pred HhhhhhcceeeeeccccccccccC-----ccccccccCCcHHHHHHHHHHHhhhhh---hhhcCCCCChhhhhhh-----
Confidence 334566788666666653333221 345677788887 77778899999887 8999999987654421
Q ss_pred CchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEe
Q 004630 496 TPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFE 575 (741)
Q Consensus 496 ~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVE 575 (741)
+. .|-+++|+||..++|+. +.++.-.++. | ...+|+|
T Consensus 145 ---------~~--~gekt~IlKPv~GaGG~-~el~~~~Ee~----------------------------~---~~~~i~Q 181 (389)
T COG2232 145 ---------LE--EGEKTLILKPVSGAGGL-VELVKFDEED----------------------------P---PPGFIFQ 181 (389)
T ss_pred ---------hh--hcceeeEEeeccCCCce-eeeccccccc----------------------------C---Ccceehh
Confidence 11 12378999999998874 2222111111 0 2679999
Q ss_pred ecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEcc-CCccccccccccCCCceEEcCCCC
Q 004630 576 PFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-SGDILSLEEKFQGGTGINLTPPPA 654 (741)
Q Consensus 576 efI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~-~~~~~d~~~ky~~g~~~~~~Pa~~ 654 (741)
+||+|. -+++++++++.....+.....+.. -...|. .=.|.++ .+|.+
T Consensus 182 efi~G~-------------------------p~Svs~is~g~~a~~la~N~QiI~~~~~~~~-~f~Y~GN----lTP~~- 230 (389)
T COG2232 182 EFIEGR-------------------------PVSVSFISNGSDALTLAVNDQIIDGLRGEYS-QFVYKGN----LTPFP- 230 (389)
T ss_pred hhcCCc-------------------------eeEEEEEecCcceEEEEEeeeeecccccccc-cceeccC----cCCCc-
Confidence 999997 889999987644332221112211 111111 0023333 56765
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCC
Q 004630 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGM 706 (741)
Q Consensus 655 ~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~ 706 (741)
.+..++++++|..+...||+.|.-.|||.+.+ ..+|++||||++--
T Consensus 231 ----~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d--~gpyViEVNPR~qG 276 (389)
T COG2232 231 ----YEEVEEAERLAEELVEELGLVGSNGVDFVLND--KGPYVIEVNPRIQG 276 (389)
T ss_pred ----chhhHHHHHHHHHHHHHhccccccccceEeec--CCcEEEEecCcccc
Confidence 23337889999999999999999999999983 45999999987643
No 160
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.03 E-value=6.3e-10 Score=111.61 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=86.6
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEecc
Q 004630 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQ 118 (741)
Q Consensus 39 P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~ 118 (741)
.+|+||+++.+|.|+....+..+. .|+||||+| ...||++.. |.+.+|+.+...-+
T Consensus 140 k~ViKp~dgCgge~i~~~~~~pd~---------------~i~qEfIeG-~~lSVSL~~---GEkv~pLsvNrQfi----- 195 (307)
T COG1821 140 KYVIKPADGCGGEGILFGRDFPDI---------------EIAQEFIEG-EHLSVSLSV---GEKVLPLSVNRQFI----- 195 (307)
T ss_pred eEEecccccCCcceeeccCCCcch---------------hhHHHhcCC-cceEEEEec---CCccccceechhhh-----
Confidence 599999999999999999887772 478999998 999999653 34444443211101
Q ss_pred CccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhC-CCCeeEeeeeecCCCCccccccccccC
Q 004630 119 GSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLG-LCDFARIDGWFLPSSTHVFSSSETKYG 197 (741)
Q Consensus 119 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~~~~~aLg-~~g~~~iD~~~~~~~~~~~~~~~~~~r 197 (741)
.+....-+|.. .+++++.++.+++.+.|.++++.++ |+||..||+.+
T Consensus 196 ---------~~~~~~~~y~g-------g~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVl---------------- 243 (307)
T COG1821 196 ---------IFAGSELVYNG-------GRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVL---------------- 243 (307)
T ss_pred ---------hhccceeeecc-------CcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEe----------------
Confidence 01111223322 2445888999999999999999986 99999999987
Q ss_pred cCCCCcEEEEeecCCCC
Q 004630 198 STEWGTILFTDINLISG 214 (741)
Q Consensus 198 ~~~~G~~~vlEiN~~Pg 214 (741)
. +.||++||||||-
T Consensus 244 --s-D~pYvIEINpR~T 257 (307)
T COG1821 244 --S-DEPYVIEINPRPT 257 (307)
T ss_pred --c-CCcEEEEecCCCC
Confidence 2 5699999999986
No 161
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.01 E-value=2.3e-09 Score=111.36 Aligned_cols=140 Identities=17% Similarity=0.208 Sum_probs=87.6
Q ss_pred ccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEEec
Q 004630 38 GKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQF 117 (741)
Q Consensus 38 ~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~ 117 (741)
+++|+||..|+++. +.++.-.++. ....+|.|+||+| +-+||.++.+++ +..+++... ++ +..
T Consensus 150 kt~IlKPv~GaGG~-~el~~~~Ee~-----------~~~~~i~Qefi~G-~p~Svs~is~g~--~a~~la~N~-Qi-I~~ 212 (389)
T COG2232 150 KTLILKPVSGAGGL-VELVKFDEED-----------PPPGFIFQEFIEG-RPVSVSFISNGS--DALTLAVND-QI-IDG 212 (389)
T ss_pred eeeEEeeccCCCce-eeeccccccc-----------CCcceehhhhcCC-ceeEEEEEecCc--ceEEEEEee-ee-ecc
Confidence 48999999998874 2222211221 0257999999998 999999998643 444343211 11 110
Q ss_pred cCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccC
Q 004630 118 QGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYG 197 (741)
Q Consensus 118 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r 197 (741)
..+ ...-|.|. ++ .+|. +.+..++++++|..+...||+.|...|||.+
T Consensus 213 ~~~-----~~~~f~Y~-----GN----lTP~--~~~~~ee~e~la~elV~~lgL~GsnGVDfvl---------------- 260 (389)
T COG2232 213 LRG-----EYSQFVYK-----GN----LTPF--PYEEVEEAERLAEELVEELGLVGSNGVDFVL---------------- 260 (389)
T ss_pred ccc-----ccccceec-----cC----cCCC--cchhhHHHHHHHHHHHHHhccccccccceEe----------------
Confidence 000 00001122 11 2343 2233388899999999999999999999987
Q ss_pred cCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCH
Q 004630 198 STEWGTILFTDINLISGMEQTSFLFQQASKVGFSH 232 (741)
Q Consensus 198 ~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~ 232 (741)
+++| +||+|||||+.- .+-.+...+|++.
T Consensus 261 -~d~g-pyViEVNPR~qG----t~e~iE~s~giNl 289 (389)
T COG2232 261 -NDKG-PYVIEVNPRIQG----TLECIERSSGINL 289 (389)
T ss_pred -ecCC-cEEEEecCcccc----hHHHHHHhcCCCH
Confidence 4556 999999998752 2334556678864
No 162
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=98.95 E-value=2.6e-09 Score=122.42 Aligned_cols=189 Identities=15% Similarity=0.088 Sum_probs=146.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
|.+.||..|+|..+++-+ +..+++++ ++||++|.|...=++..+.++++.+++...+.++-.-+.+.+++|
T Consensus 1041 Ld~i~v~Qp~Wkelt~~~----eA~~F~~~-----VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVi 1111 (1435)
T KOG0370|consen 1041 LDSIGVDQPAWKELTSLE----EAKKFAEK-----VGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSPDHPVVI 1111 (1435)
T ss_pred HHHcCCCchhhhhhccHH----HHHHHHHh-----cCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCCCCCEEh
Confidence 456789999998888766 77778865 556999999998888899999999998776666544467889999
Q ss_pred eeccCCCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHH
Q 004630 81 ELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIRE 160 (741)
Q Consensus 81 Ee~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~ 160 (741)
-+||+|.+|+.|..+. .++..++....|.. .+...+.+..+....|.+++++..++|++
T Consensus 1112 sKfie~AkEidvDAVa----~~G~~~~haiSEHv-----------------EnAGVHSGDAtlv~Ppq~l~~~t~~rik~ 1170 (1435)
T KOG0370|consen 1112 SKFIEGAKEIDVDAVA----SDGKVLVHAISEHV-----------------ENAGVHSGDATLVLPPQDLSADTLERIKD 1170 (1435)
T ss_pred HHhhcccceechhhhc----cCCeEEEEehhhhh-----------------hcccccCCceeEeCCchhcCHHHHHHHHH
Confidence 9999999999999885 23444443333221 01334555545556677899999999999
Q ss_pred HHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCCCCChHHHHHHHcCCCHHHHHHHHH
Q 004630 161 GASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGMEQTSFLFQQASKVGFSHSNILRTII 240 (741)
Q Consensus 161 ~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~ll~~ii 240 (741)
++.++.++|.+.|..++.|+. +++++.|||.|-|.. ..||-..+-.|.++-++..+.|
T Consensus 1171 i~~ki~~a~~itGPfN~Q~i~------------------k~n~lkVIECN~RaS----RSFPFvSKtlgvdfi~~At~~i 1228 (1435)
T KOG0370|consen 1171 IAAKVAKALKITGPFNMQIIA------------------KDNELKVIECNVRAS----RSFPFVSKTLGVDFIALATRAI 1228 (1435)
T ss_pred HHHHHHHHhcccCCceEEEEe------------------cCCeEEEEEeeeeee----ccccceehhcCchHHHHHHHHH
Confidence 999999999999999999986 567899999998643 3456677888999988877654
Q ss_pred H
Q 004630 241 G 241 (741)
Q Consensus 241 ~ 241 (741)
-
T Consensus 1229 ~ 1229 (1435)
T KOG0370|consen 1229 M 1229 (1435)
T ss_pred h
Confidence 3
No 163
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.94 E-value=7.2e-09 Score=115.38 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=101.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecC----CCCCCcceEEeCCHHHHHHHHHHhHhhCC--
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT----RAGSSIGVTVAYGVIDSLKKAKGIILEGI-- 74 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~----~~~~S~GV~~v~~~~e~~~~~~~~~~~~~-- 74 (741)
|+++|||||+|..+.+.+ ++.++++.++ .||+|+||. ..+.+-||.+++|.+++.+++.+++....
T Consensus 12 l~~~GIpvp~~~~~~~~~----ea~~~~~~ig----~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~ 83 (386)
T TIGR01016 12 FAKYGIPVPRGYVATSVE----EAEEIAAKLG----AGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVT 83 (386)
T ss_pred HHHcCCCCCCceeeCCHH----HHHHHHHHhC----CCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceee
Confidence 468999999999987654 6666665544 059999997 23334599999999998887777664111
Q ss_pred ------C---CeEEEeeccCCCeEEEEEEEecCCCCccceeEecc--e----------------EEEEeccCccccccCC
Q 004630 75 ------D---DRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP--T----------------EVELQFQGSVDVREKD 127 (741)
Q Consensus 75 ------~---~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~--~----------------ei~~~~~~~~~~~~~~ 127 (741)
+ ..++||+|+++++|+.|+++.+... ..|+++.- + .+.+.+ ..
T Consensus 84 ~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~--~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p--------~~ 153 (386)
T TIGR01016 84 NQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSA--RCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDP--------LT 153 (386)
T ss_pred cccCCCCCEeeEEEEEECccCCceEEEEEEEcCCC--CceEEEEECCCCccHHHHhhhCccceEEEEcCC--------Cc
Confidence 1 3699999999559999999986431 23433110 0 111111 12
Q ss_pred cceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeee
Q 004630 128 AIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDG 179 (741)
Q Consensus 128 ~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~ 179 (741)
++++|..++... +..++....+.+.+++.++++.+.-.+...+|+
T Consensus 154 ~~~~~~a~~~~~-------~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEI 198 (386)
T TIGR01016 154 GLLPYQAREIAK-------KLGLEGELVKQVADIIKKLYQIFLEYDASLVEI 198 (386)
T ss_pred CCCHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEe
Confidence 344444443211 334778888999999999999888766666665
No 164
>PRK12458 glutathione synthetase; Provisional
Probab=98.91 E-value=5.4e-08 Score=106.28 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=106.5
Q ss_pred CCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHH-HHHHHHHhHhhCCCCeEEEeecc
Q 004630 6 FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVID-SLKKAKGIILEGIDDRVVVELFL 84 (741)
Q Consensus 6 Ip~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e-~~~~~~~~~~~~~~~~vlVEe~i 84 (741)
+++|++....+.+ ++.+++++.+. .|+|+||..+++|+||.++++.++ .+..+.+.+. ....+|+|+||
T Consensus 139 ~~vP~T~v~~~~~----~~~~~~~~~~~----~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~--~~~~~ivQeyI 208 (338)
T PRK12458 139 EVRPTTHISRNKE----YIREFLEESPG----DKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYS--GDGYVIAQEYL 208 (338)
T ss_pred CCCCCEEEeCCHH----HHHHHHHHcCC----CeEEEEECCCCCccCeEEEecCChhhHHHHHHHHh--hCCCEEEEEcc
Confidence 5677777654433 56666654432 259999999999999999986654 2223333332 24589999999
Q ss_pred CC--CeEEEEEEEecCCCCcccee------EecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHH
Q 004630 85 EG--GSEFTAIVLDVGSGFDCHPV------VLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVIN 156 (741)
Q Consensus 85 ~G--~~E~sv~vl~~~~~~~~~~~------~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~ 156 (741)
++ +.|++|.+++ + .++ . .-.+ .+ .. -++..+...++ ...+..++ +
T Consensus 209 ~~~~~gDiRv~vv~----g--~~v~~~g~~~---a~~R-~~--------~~--~d~RsN~~~Gg---~~~~~~l~----~ 261 (338)
T PRK12458 209 PGAEEGDVRILLLN----G--EPLERDGHYA---AMRR-VP--------AG--GDVRSNVHAGG---SVVKHTLT----K 261 (338)
T ss_pred cCCCCCCEEEEEEC----C--EEEeecccee---EEEE-ec--------CC--CCeeecccCCC---cccCcCCC----H
Confidence 74 2678888874 2 222 1 0011 11 00 12233333332 22344455 4
Q ss_pred HHHHHHHHHHHHh---CCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecC-CCCCCCCChHHHHHHHcCCCH
Q 004630 157 SIREGASLLFQRL---GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL-ISGMEQTSFLFQQASKVGFSH 232 (741)
Q Consensus 157 ~i~~~a~~~~~aL---g~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~-~Pgl~~~s~~~~~~~~~G~~~ 232 (741)
+++++|.++..+| |+. ++.||++ | .+++|||+ .|| .++.+.+.+|+|.
T Consensus 262 ~~~~ia~~~~~~l~~~GL~-~~gVDli---------------------~-~~l~EIN~~sp~-----g~~~~~~~~g~d~ 313 (338)
T PRK12458 262 EELELCEAIRPKLVRDGLF-FVGLDIV---------------------G-DKLVEVNVFSPG-----GLTRINKLNKIDF 313 (338)
T ss_pred HHHHHHHHHHHHHhhcCCe-EEeEEEE---------------------C-CEEEEEeCCCcc-----hHHHHHHHhCCCH
Confidence 4566777776666 543 8999975 1 26899998 464 3455567789999
Q ss_pred HHHHHHHHHHHHhh
Q 004630 233 SNILRTIIGHACSR 246 (741)
Q Consensus 233 ~~ll~~ii~~a~~r 246 (741)
.+.+-..|...+++
T Consensus 314 a~~i~~~i~~~~~~ 327 (338)
T PRK12458 314 VEDIIEALERKVQR 327 (338)
T ss_pred HHHHHHHHHHHHhH
Confidence 88877777666544
No 165
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.91 E-value=5.4e-08 Score=105.25 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=103.3
Q ss_pred CCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccC
Q 004630 6 FITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 85 (741)
Q Consensus 6 Ip~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~ 85 (741)
.++|++....+.+ ++.+++++.+ |+|+||..|++|.||.++.+.+.....+.+.+.......+++|+||+
T Consensus 132 ~~vP~T~v~~~~~----~~~~~~~~~g------~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~ 201 (312)
T TIGR01380 132 KVIPPTLVTRDKA----EIRAFLAEHG------DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLP 201 (312)
T ss_pred CCCCCEEEeCCHH----HHHHHHHHcC------CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccc
Confidence 3788887654443 5666665433 89999999999999998875332122222222212245899999996
Q ss_pred C--CeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHH
Q 004630 86 G--GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 163 (741)
Q Consensus 86 G--~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~ 163 (741)
. +.|++|.+++ ++ ++... +...+ .. -++..+...|+ ...|..++++. +++|.
T Consensus 202 ~~~~~D~Rv~vv~----g~--vv~~a---i~R~~--------~~--gd~r~N~~~Gg---~~~~~~l~~e~----~~ia~ 255 (312)
T TIGR01380 202 EIKEGDKRILLID----GE--PIGAA---VARIP--------AG--GEFRGNLAVGG---RGEATELSERD----REICA 255 (312)
T ss_pred cccCCCEEEEEEC----Ce--EEEEE---EEecC--------CC--CCccccccCCc---eeeccCCCHHH----HHHHH
Confidence 2 2799999994 22 22101 11111 11 13344444443 34455566543 44555
Q ss_pred HHH---HHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCC-CCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 164 LLF---QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 164 ~~~---~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~-Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++. +++|+ .+++||++ | .||+|||+. |. .+..+...+|++..+.+...
T Consensus 256 ~~~~~~~~~gl-~~agVDii---------------------g-~~v~EvN~~~p~-----~~~~~~~~~g~~ia~~i~d~ 307 (312)
T TIGR01380 256 DVAPELKRRGL-LFVGIDVI---------------------G-GYLTEVNVTSPT-----GIREIDRQKGVNIAGMLWDA 307 (312)
T ss_pred HHHHHHHhcCC-cEEEEEEe---------------------C-CEEEEEecCCcc-----hHHHHHhhhCCCHHHHHHHH
Confidence 554 56666 49999975 2 479999974 31 23445577899988777666
Q ss_pred HHH
Q 004630 240 IGH 242 (741)
Q Consensus 240 i~~ 242 (741)
|..
T Consensus 308 l~~ 310 (312)
T TIGR01380 308 IEK 310 (312)
T ss_pred HHh
Confidence 654
No 166
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.91 E-value=2e-08 Score=111.90 Aligned_cols=181 Identities=13% Similarity=0.154 Sum_probs=115.0
Q ss_pred ChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCC-CcEEEecC----CCCCCcceEEeCCccchHH
Q 004630 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQC-KTLCVKPA----RDGCSTGVARLCCAEDLTV 538 (741)
Q Consensus 464 DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~-~PvvVKP~----~~gsS~GV~~v~~~~eL~~ 538 (741)
+.+.+|++ |+++|||||++..+.+.+ .+.++..++ + ||+||||. ..|++-||.++++.+++.+
T Consensus 4 ~E~~aK~l---l~~~GIpvp~~~~~~~~~--------ea~~~~~~i-g~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~ 71 (386)
T TIGR01016 4 HEYQAKQI---FAKYGIPVPRGYVATSVE--------EAEEIAAKL-GAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARA 71 (386)
T ss_pred cHHHHHHH---HHHcCCCCCCceeeCCHH--------HHHHHHHHh-CCCcEEEEecccCCCCccCceEEEeCCHHHHHH
Confidence 46778888 999999999998885432 234455678 6 99999998 3445569999988888774
Q ss_pred HHHHHHHHHhcCCCCCcccc-cccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCC
Q 004630 539 YVKALEECLLRIPPNSFSRA-HGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCG 617 (741)
Q Consensus 539 ~~~al~~a~~~~~~~~l~~~-~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~ 617 (741)
++++.+.. .+... .+ -+......++||+|+++. +|+.++++.+..
T Consensus 72 ---a~~~l~~~----~~~~~~~~---~~g~~~~~vlVEe~v~~g------------------------~E~~v~i~~d~~ 117 (386)
T TIGR01016 72 ---AAEKLLGK----ELVTNQTD---PLGQPVNKILIEEATDID------------------------KEYYLSIVIDRS 117 (386)
T ss_pred ---HHHHHhcc----ceeecccC---CCCCEeeEEEEEECccCC------------------------ceEEEEEEEcCC
Confidence 44444321 00000 00 000012479999999842 399999888642
Q ss_pred --CceecCc-------------------eEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHc
Q 004630 618 --SMHSLMP-------------------SVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 618 --~~~~~~~-------------------~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
.++.+.+ .+.+.+..++++|+++|..+ +.. ++....+.+.+++.++++.+
T Consensus 118 ~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~~~~~------~l~---~~~~~~~~l~~~l~~l~~~~ 188 (386)
T TIGR01016 118 ARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAK------KLG---LEGELVKQVADIIKKLYQIF 188 (386)
T ss_pred CCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHHHHHH------HcC---CCHHHHHHHHHHHHHHHHHH
Confidence 1221111 23344455688888877533 222 46778889999999999888
Q ss_pred CCcceeEEEE---EEEcCCCcEEEEec
Q 004630 677 QLEGFSRIDA---FVNVDNGEVLIIEV 700 (741)
Q Consensus 677 g~~G~~rvDf---~v~~~~g~~~viEI 700 (741)
.-..+.-+|+ +++. +|+++.++.
T Consensus 189 ~~~~~~~lEINPl~v~~-~g~~~a~Da 214 (386)
T TIGR01016 189 LEYDASLVEINPLVITK-DGNLIALDA 214 (386)
T ss_pred HhCCceEEEeeeeEEcC-CCCEEEEee
Confidence 7655666663 4443 566666654
No 167
>PRK05246 glutathione synthetase; Provisional
Probab=98.84 E-value=1.8e-07 Score=101.40 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=102.1
Q ss_pred CCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCH-HHHHHHHHHhHhhCCCCeEEEeeccC
Q 004630 7 ITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGV-IDSLKKAKGIILEGIDDRVVVELFLE 85 (741)
Q Consensus 7 p~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~-~e~~~~~~~~~~~~~~~~vlVEe~i~ 85 (741)
++|++....+.+ ++.+++++.+ |+|+||..|++|+||.++... .++ ..+.+.+......++|+|+||+
T Consensus 134 ~vP~T~~~~~~~----~~~~~~~~~~------~vVlKP~~G~~G~gV~~i~~~~~~~-~~~~~~l~~~~~~~~lvQ~~I~ 202 (316)
T PRK05246 134 LMPPTLVTRDKA----EIRAFRAEHG------DIILKPLDGMGGAGIFRVKADDPNL-GSILETLTEHGREPVMAQRYLP 202 (316)
T ss_pred cCCCEEEeCCHH----HHHHHHHHCC------CEEEEECCCCCccceEEEeCCCccH-HHHHHHHHHccCCeEEEEeccc
Confidence 678877655443 5656665443 899999999999999999543 332 2222333222346899999996
Q ss_pred C--CeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHH
Q 004630 86 G--GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGAS 163 (741)
Q Consensus 86 G--~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~ 163 (741)
. +.+++|.+++ ++ ++..... + .+ .. -++..+.+.|+ ...|..++++ ..++|.
T Consensus 203 ~~~~~D~Rv~vv~----g~--vv~~a~~--R-~~--------~~--~~~rtN~~~Gg---~~~~~~l~~~----~~~ia~ 256 (316)
T PRK05246 203 EIKEGDKRILLVD----GE--PVGYALA--R-IP--------AG--GETRGNLAAGG---RGEATPLTER----DREICA 256 (316)
T ss_pred cCCCCCEEEEEEC----CE--EhhheeE--e-cC--------CC--CCcccCccCCc---eEeccCCCHH----HHHHHH
Confidence 4 3799999983 22 1110111 1 11 11 13344444443 3455556654 355555
Q ss_pred HHH---HHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCC-CCCCCCChHHHHHHHcCCCHHHHHHHH
Q 004630 164 LLF---QRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI-SGMEQTSFLFQQASKVGFSHSNILRTI 239 (741)
Q Consensus 164 ~~~---~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~-Pgl~~~s~~~~~~~~~G~~~~~ll~~i 239 (741)
++. +.+|+ .+++||+. | .||+|||.. |+ .+..+.+.+|++..+.+...
T Consensus 257 ~~~~~l~~~gl-~~~GVDli---------------------~-~~l~EvN~~~p~-----~~~~~~~~tg~~ia~~i~~~ 308 (316)
T PRK05246 257 AIGPELKERGL-IFVGIDVI---------------------G-DYLTEINVTSPT-----GIREIERLTGVDIAGMLWDA 308 (316)
T ss_pred HHHHHHHHhCC-CEEEEEEe---------------------C-CEEEEEeCCCch-----HHHHHHHHhCCCHHHHHHHH
Confidence 555 55565 48999975 2 179999974 53 24556678899987766555
Q ss_pred HHH
Q 004630 240 IGH 242 (741)
Q Consensus 240 i~~ 242 (741)
+..
T Consensus 309 ~~~ 311 (316)
T PRK05246 309 IEA 311 (316)
T ss_pred HHH
Confidence 543
No 168
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.74 E-value=6e-07 Score=95.73 Aligned_cols=218 Identities=15% Similarity=0.140 Sum_probs=117.5
Q ss_pred CCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCC---chhhHHHHHHhhcCCCcEEEecCCCCCCcceEEe
Q 004630 454 PGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKT---PIVDIWHELTSKLQCKTLCVKPARDGCSTGVARL 530 (741)
Q Consensus 454 ~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~---~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v 530 (741)
+......+.-||..++++ +.++|||+|+.+......+... ...+.+.++.......++|+||+.+.++.||.++
T Consensus 16 N~~~~~~l~~DK~~~~~l---~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i 92 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQL---FRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVI 92 (285)
T ss_pred CchhhccccCCHHHHHHH---HHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEE
Confidence 344677888999999998 9999999999544222233211 1233444444443237999999999999999998
Q ss_pred CCccc--hHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEE
Q 004630 531 CCAED--LTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEI 608 (741)
Q Consensus 531 ~~~~e--L~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Ei 608 (741)
+..+. +..-...+....... ....+|||++|.-.+.+-. +.-++ + ..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~liqe~i~qh~~~~~----------~~~~s-v--nTi 142 (285)
T PF14397_consen 93 DRRDGSEINRDISALYAGLESL-----------------GGKDYLIQERIEQHPELAA----------LSPSS-V--NTI 142 (285)
T ss_pred EeecCcccccchhHHHHHHHhc-----------------CCccEEEEecccCCHHHHh----------hCCCC-C--CcE
Confidence 76552 110001222211110 0127999999975433221 11111 1 134
Q ss_pred EEEEEcCCCCceecCceEEEcc-------------------CCccccccccccC-CCceEEcCCC---CCCCCHHHHHHH
Q 004630 609 TVGVIGKCGSMHSLMPSVTVKE-------------------SGDILSLEEKFQG-GTGINLTPPP---ASIMSTEALDKC 665 (741)
Q Consensus 609 sv~vl~~~~~~~~~~~~~~i~~-------------------~~~~~d~~~ky~~-g~~~~~~Pa~---~~~l~~e~~~~i 665 (741)
.+..+-+.+.+..+...+++.. ..++-.+- .|.. +......|-. +..+.-.--+++
T Consensus 143 RvvT~~~~~~~~~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~-~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~ 221 (285)
T PF14397_consen 143 RVVTFLDDGEVEVLMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFA-GYDQDGERYEHHPDTGAPFSGFQIPNWDEI 221 (285)
T ss_pred EEEEEEeCCeeEEEEEEEEeCCCCCcccccCCCCEEEEEecCCCccccc-cccCCCCEeeeCCCCCCccCCccCCCHHHH
Confidence 4433322222222222222211 11111110 0100 0001112211 000111226789
Q ss_pred HHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCC--CCCC
Q 004630 666 KQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV--PGMT 707 (741)
Q Consensus 666 ~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~--Pg~t 707 (741)
.+++.++++.+---++...|+-+++ +| ++++|.|+. ||+.
T Consensus 222 ~~l~~~~~~~~p~~~~iGWDvait~-~G-p~llE~N~~~~pgl~ 263 (285)
T PF14397_consen 222 LELAKEAHRKFPGLGYIGWDVAITE-DG-PVLLEGNARWDPGLM 263 (285)
T ss_pred HHHHHHHHHHCCCCCeEEEEEEEcC-CC-cEEEEeeCCCCCCcH
Confidence 9999999988877789999999995 68 999999999 8864
No 169
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.66 E-value=1.8e-06 Score=91.10 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=120.1
Q ss_pred HHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHc-CCC--ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecC
Q 004630 443 LLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADL-GVL--TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPA 519 (741)
Q Consensus 443 lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~-GIp--~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~ 519 (741)
+-+..|||+.+++ ..||+.+.+. |.+. .+. .|++..+...+ .+.++..+. --|++||.
T Consensus 3 ~k~~~~i~~~n~~------~~~Kw~v~~~---L~~~~~l~~~LP~T~~~~~~~--------~l~~~L~~y--~~vylKP~ 63 (262)
T PF14398_consen 3 LKKQKGIPFFNPG------FFDKWEVYKA---LSRDPELRPYLPETELLTSFE--------DLREMLNKY--KSVYLKPD 63 (262)
T ss_pred hHhcCCCEEeCCC------CCCHHHHHHH---HHcCCcchhhCCCceEcCCHH--------HHHHHHHHC--CEEEEEeC
Confidence 3467899999875 3699999998 7765 344 67777765422 233344443 25889999
Q ss_pred CCCCCcceEEeCCcc-------------------chHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 520 RDGCSTGVARLCCAE-------------------DLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 520 ~~gsS~GV~~v~~~~-------------------eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
.++.+.||.++.... ++.++...+.... ....+|||+.|+-
T Consensus 64 ~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------------------~~~~yIiQq~I~l 123 (262)
T PF14398_consen 64 NGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL--------------------GKRRYIIQQGIPL 123 (262)
T ss_pred CCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc--------------------CCCcEEEeCCccc
Confidence 999999998764322 1222222222211 1468999999975
Q ss_pred cchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCce-EEEccCCccccccccccCCCceEEcCCC-C-C--
Q 004630 581 DEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPS-VTVKESGDILSLEEKFQGGTGINLTPPP-A-S-- 655 (741)
Q Consensus 581 ~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~-~~i~~~~~~~d~~~ky~~g~~~~~~Pa~-~-~-- 655 (741)
. ..+|.. .++.+-+--+..+.+.+.+. .++...+.+-+ ....|.. ..|.. . .
T Consensus 124 ~----------------~~~gr~--fD~RvlvqK~~~G~W~vtg~~~Rva~~~~ivT---N~~~GG~--~~~~~~~l~~~ 180 (262)
T PF14398_consen 124 A----------------TYDGRP--FDFRVLVQKNGSGKWQVTGIVARVAKPGSIVT---NLSQGGT--ALPFEEVLRQS 180 (262)
T ss_pred c----------------ccCCCe--EEEEEEEEECCCCCEEEEEEEEEEcCCCCcee---ccCCCce--ecCHHHHHHhh
Confidence 4 223322 25666665554333333322 23333332222 1222221 11110 0 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC----C-cceeEEEEEEEcCCCcEEEEecCCCCCCCCC
Q 004630 656 IMSTEALDKCKQRIELIANALQ----L-EGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 656 ~l~~e~~~~i~~~a~~~~~aLg----~-~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~ 709 (741)
.-...+.++|.++|..++.+|. . -|-..+|+-+|. +|++|++|||+.|+-...
T Consensus 181 ~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~-~g~iWliEvN~kP~~~~~ 238 (262)
T PF14398_consen 181 EEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDK-NGKIWLIEVNSKPGKFDF 238 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcC-CCCEEEEEEeCCCCcchh
Confidence 0134567778888888887664 3 356799999995 799999999999996554
No 170
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.64 E-value=8.3e-07 Score=94.51 Aligned_cols=221 Identities=19% Similarity=0.196 Sum_probs=126.2
Q ss_pred CccEEEEccCCCCCCc--hHHHHHHHHc-CCCccCCCHHHHHHhhChHHHHHHHHHHHH----cCCCccCeEEEeCcccc
Q 004630 422 NQATVFIAVHGGIGED--GTLQSLLEAE-GVPYTGPGVMASKTCMDKVATSLALNHLAD----LGVLTINKDVRRKEDLL 494 (741)
Q Consensus 422 ~~Dvvf~~lhG~~GEd--g~iq~lLE~~-giPyvG~~~~asal~~DK~~tk~~~~~l~~----~GIp~p~~~~v~~~e~~ 494 (741)
.+|+++-=+.+ ++ ..+|.+.+.. +++.+ -...+....+|+..|.+++..+.. ..|.+|++..+....
T Consensus 52 pfDvIlHKltd---~~~~~~l~~y~~~hP~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 125 (307)
T PF05770_consen 52 PFDVILHKLTD---EDWVQQLEEYIKKHPEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA-- 125 (307)
T ss_dssp -SCEEEE--CH---CHHHHHHHHHHHH-TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH--
T ss_pred CcEEEEEeCCC---HHHHHHHHHHHHHCCCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH--
Confidence 36887766655 32 3667777654 66665 456889999999999888444321 267899999987531
Q ss_pred CCchhhHHHHH-HhhcCCCcEEEecCCCC---CCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCC
Q 004630 495 KTPIVDIWHEL-TSKLQCKTLCVKPARDG---CSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPE 570 (741)
Q Consensus 495 ~~~~~~~~~~~-~~~lg~~PvvVKP~~~g---sS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~ 570 (741)
++....+ .+.| .||+|+||.... .|..+.++.+.+.|.. + ..
T Consensus 126 ----~~~~~~l~~agL-~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~----L-------------------------~~ 171 (307)
T PF05770_consen 126 ----ESLPELLKEAGL-KFPLICKPLVACGSADSHKMAIVFNEEGLKD----L-------------------------KP 171 (307)
T ss_dssp ----CCHHHHHHCTTS--SSEEEEESB-SSTSCCCEEEEE-SGGGGTT-------------------------------S
T ss_pred ----HHHHHHHHHCCC-cccEEeeehhhcCCccceEEEEEECHHHHhh----c-------------------------CC
Confidence 1122222 3578 799999997654 4677889999999863 1 35
Q ss_pred eEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEE------ccCCccccccc--ccc
Q 004630 571 ILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTV------KESGDILSLEE--KFQ 642 (741)
Q Consensus 571 ~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i------~~~~~~~d~~~--ky~ 642 (741)
++++||||.-. | .=+-|-|+|+.-.. ..-+++.- .....+|++.. +..
T Consensus 172 P~VlQeFVNHg-------------------g----vLfKVyVvGd~v~~-v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~ 227 (307)
T PF05770_consen 172 PCVLQEFVNHG-------------------G----VLFKVYVVGDKVFV-VKRPSLPNVSSGKLDREEIFFDFHQVSKLE 227 (307)
T ss_dssp SEEEEE----T-------------------T----EEEEEEEETTEEEE-EEEE------SSS-TCGGCCCEGGGTCSTT
T ss_pred CEEEEEeecCC-------------------C----EEEEEEEecCEEEE-EECCCCCCCCcccccccccceeccccCCcc
Confidence 79999999742 1 46777777763111 11111110 11123455532 111
Q ss_pred CCCc-eEEc--CCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCC-CcEEEEecCCCCCCCCCc
Q 004630 643 GGTG-INLT--PPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDN-GEVLIIEVNTVPGMTPST 710 (741)
Q Consensus 643 ~g~~-~~~~--Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~-g~~~viEINt~Pg~t~~S 710 (741)
.... .... +.... .++ .+.++++|..+-++||+. +.++|++++..+ |+.||++||-.||+...-
T Consensus 228 ~~~~~~~~d~~~~~~~-~p~--~~~v~~la~~LR~~lgL~-LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp 295 (307)
T PF05770_consen 228 SSSDLSDLDKDPSQVE-MPP--DELVEKLAKELRRALGLT-LFGFDVIRENGTGGRYYVIDINYFPGYKKVP 295 (307)
T ss_dssp TSSGGGSBSS-TTTTT-S----HHHHHHHHHHHHHHHT-S-EEEEEEEEGCCT-SSEEEEEEEES--TTTSC
T ss_pred ccCchhhcccCccccc-CCC--HHHHHHHHHHHHHHhCcc-eeeeEEEEEcCCCCcEEEEEeccCCCccCCC
Confidence 1100 0011 11111 122 356788999999999998 889999998777 789999999999998763
No 171
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.35 E-value=8.9e-06 Score=90.82 Aligned_cols=91 Identities=21% Similarity=0.144 Sum_probs=69.6
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCC--CCCc--ceEEeCCHHHHHHHHHHhHhhCC--
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRA--GSSI--GVTVAYGVIDSLKKAKGIILEGI-- 74 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~--~~S~--GV~~v~~~~e~~~~~~~~~~~~~-- 74 (741)
|+++|||+|++..+.+.+ ++.++++.++ +||+|+||... +.|. ||.+++|.+++.+++.+++....
T Consensus 12 L~~~gIpvp~~~~~~~~~----ea~~~a~~i~----g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~ 83 (388)
T PRK00696 12 FAKYGVPVPRGIVATTPE----EAVEAAEELG----GGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVT 83 (388)
T ss_pred HHHcCCCCCCCeeeCCHH----HHHHHHHHcC----CCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceee
Confidence 468999999999988776 6666666540 56999999643 2333 99999999999888887764311
Q ss_pred ------C---CeEEEeeccCCCeEEEEEEEecCC
Q 004630 75 ------D---DRVVVELFLEGGSEFTAIVLDVGS 99 (741)
Q Consensus 75 ------~---~~vlVEe~i~G~~E~sv~vl~~~~ 99 (741)
+ ..++||+++++++|+.+.+..+..
T Consensus 84 ~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~ 117 (388)
T PRK00696 84 HQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRA 117 (388)
T ss_pred eccCCCCCEEeEEEEEeccCCCceEEEEEEEcCC
Confidence 1 259999999955999999998754
No 172
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.33 E-value=8.2e-06 Score=86.05 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=91.9
Q ss_pred CCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeC----------------------CHHHHHHH
Q 004630 8 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAY----------------------GVIDSLKK 65 (741)
Q Consensus 8 ~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~----------------------~~~e~~~~ 65 (741)
.|++..+++.+ ++.+++.+.+ -++|||..|+.|+||.++. +.+++...
T Consensus 36 LP~T~~~~~~~----~l~~~L~~y~------~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (262)
T PF14398_consen 36 LPETELLTSFE----DLREMLNKYK------SVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQF 105 (262)
T ss_pred CCCceEcCCHH----HHHHHHHHCC------EEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHH
Confidence 35555555544 5666665543 4999999999999996542 23455444
Q ss_pred HHHhHhhCCCCeEEEeeccC-----C-CeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCC
Q 004630 66 AKGIILEGIDDRVVVELFLE-----G-GSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPT 139 (741)
Q Consensus 66 ~~~~~~~~~~~~vlVEe~i~-----G-~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~ 139 (741)
+...+ ....+|||+.|+ | ..++.|.+-.+++|. .-+.-.. .++.. ...+ ..+...|
T Consensus 106 l~~~~---~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~--W~vtg~~--~Rva~--------~~~i---vTN~~~G 167 (262)
T PF14398_consen 106 LKELL---GKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGK--WQVTGIV--ARVAK--------PGSI---VTNLSQG 167 (262)
T ss_pred HHHhc---CCCcEEEeCCccccccCCCeEEEEEEEEECCCCC--EEEEEEE--EEEcC--------CCCc---eeccCCC
Confidence 44432 345899999994 3 135556555443321 2221111 11111 1111 1222223
Q ss_pred CCeEEEcCC-------CCCHHHHHHHHHHHHHHHHHhCC-----CCeeEeeeeecCCCCccccccccccCcCCCCcEEEE
Q 004630 140 QQVAYHTPP-------RFPIVVINSIREGASLLFQRLGL-----CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFT 207 (741)
Q Consensus 140 ~~~~~~~P~-------~~~~~~~~~i~~~a~~~~~aLg~-----~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vl 207 (741)
+ ...|. .-...+.++|.++|..+++.|.- .|-..+|+-+ |.+|++|++
T Consensus 168 G---~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~i-----------------D~~g~iWli 227 (262)
T PF14398_consen 168 G---TALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGI-----------------DKNGKIWLI 227 (262)
T ss_pred c---eecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEE-----------------cCCCCEEEE
Confidence 2 11111 11344667788888887776643 2445678765 789999999
Q ss_pred eecCCCCCC
Q 004630 208 DINLISGME 216 (741)
Q Consensus 208 EiN~~Pgl~ 216 (741)
|+|+.|+-.
T Consensus 228 EvN~kP~~~ 236 (262)
T PF14398_consen 228 EVNSKPGKF 236 (262)
T ss_pred EEeCCCCcc
Confidence 999999843
No 173
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.28 E-value=6.4e-06 Score=80.93 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=71.8
Q ss_pred ccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCc-cchHHHHHHHHHHH-hcCCCCCccccc
Q 004630 482 TINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCA-EDLTVYVKALEECL-LRIPPNSFSRAH 559 (741)
Q Consensus 482 ~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~-~eL~~~~~al~~a~-~~~~~~~l~~~~ 559 (741)
+|++....+. +.+..+.++. +. +|+||..+.|+.||.++... .++. ++-+.+ ..
T Consensus 12 ~P~T~vs~~~--------~~i~~f~~~~-~~-~VlKPl~g~gG~gV~~i~~~~~n~~----~i~e~~~~~---------- 67 (173)
T PF02955_consen 12 IPPTLVSRDK--------EEIRAFIEEH-GD-IVLKPLDGMGGRGVFRISRDDPNLN----SILETLTKN---------- 67 (173)
T ss_dssp S--EEEES-H--------HHHHHHHHHH-SS-EEEEESS--TTTT-EEE-TT-TTHH----HHHHHHTTT----------
T ss_pred CcCEEEECCH--------HHHHHHHHHC-CC-EEEEECCCCCCcCEEEEcCCCCCHH----HHHHHHHhc----------
Confidence 4666655432 2345566666 35 99999999999999999874 3343 332322 21
Q ss_pred ccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceE-EEccCCcccccc
Q 004630 560 GMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSV-TVKESGDILSLE 638 (741)
Q Consensus 560 ~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~-~i~~~~~~~d~~ 638 (741)
....+++|+|++.- .+| |.++-++... ..+.+ ++...+ ||+
T Consensus 68 --------~~~~~mvQ~flp~i-----------------~~G-----DkRii~~nG~-----~~~av~R~P~~g---d~R 109 (173)
T PF02955_consen 68 --------GERPVMVQPFLPEI-----------------KEG-----DKRIILFNGE-----PSHAVRRIPAKG---DFR 109 (173)
T ss_dssp --------TTS-EEEEE--GGG-----------------GG------EEEEEEETTE-----E-SEEEEE--SS----S-
T ss_pred --------CCccEEEEeccccc-----------------cCC-----CEEEEEECCE-----EhHHeecCCCCC---Cce
Confidence 13679999999852 245 8888888653 22233 333333 344
Q ss_pred ccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcc--eeEEEEEEEcCCCcEEEEecCC
Q 004630 639 EKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEG--FSRIDAFVNVDNGEVLIIEVNT 702 (741)
Q Consensus 639 ~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G--~~rvDf~v~~~~g~~~viEINt 702 (741)
.....|....... +++ +-++.|+++...|.-+| |++||++ . + |+.|||.
T Consensus 110 ~N~~~Gg~~~~~~-----lt~----~e~~i~~~i~~~L~~~Gl~f~GiDvi-g---~--~l~EiNv 160 (173)
T PF02955_consen 110 SNLAAGGSAEPAE-----LTE----REREICEQIGPKLREDGLLFVGIDVI-G---D--KLTEINV 160 (173)
T ss_dssp --GGGTSCEEEEE-------H----HHHHHHHHHHHHHHHTT--EEEEEEE-T---T--EEEEEE-
T ss_pred eeeccCCceeecC-----CCH----HHHHHHHHHHHHHhhcCcEEEEEecc-c---c--ceEEEec
Confidence 4333333332222 233 33455555555554444 7999964 2 2 7999996
No 174
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.26 E-value=7.1e-06 Score=80.63 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred CCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccCC-
Q 004630 8 TVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEG- 86 (741)
Q Consensus 8 ~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~G- 86 (741)
+|+..+..+.+ ++.++.+..+. +|+||..+.+|.||.++..-+.-...+.+.+......++|+|+||+.
T Consensus 12 ~P~T~vs~~~~----~i~~f~~~~~~------~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i 81 (173)
T PF02955_consen 12 IPPTLVSRDKE----EIRAFIEEHGD------IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEI 81 (173)
T ss_dssp S--EEEES-HH----HHHHHHHHHSS------EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGG
T ss_pred CcCEEEECCHH----HHHHHHHHCCC------EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccc
Confidence 35555444333 67777766542 99999999999999998764332344444443344568999999963
Q ss_pred -CeEEEEEEEe
Q 004630 87 -GSEFTAIVLD 96 (741)
Q Consensus 87 -~~E~sv~vl~ 96 (741)
.-|.++.+++
T Consensus 82 ~~GDkRii~~n 92 (173)
T PF02955_consen 82 KEGDKRIILFN 92 (173)
T ss_dssp GG-EEEEEEET
T ss_pred cCCCEEEEEEC
Confidence 1388999884
No 175
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.13 E-value=8e-05 Score=79.50 Aligned_cols=44 Identities=20% Similarity=0.099 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCC--CCCC
Q 004630 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLI--SGME 216 (741)
Q Consensus 155 ~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~--Pgl~ 216 (741)
-+++.+++.++++.+-..++...|+-+ |++| |.++|.|.+ ||+.
T Consensus 218 w~~~~~l~~~~~~~~p~~~~iGWDvai-----------------t~~G-p~llE~N~~~~pgl~ 263 (285)
T PF14397_consen 218 WDEILELAKEAHRKFPGLGYIGWDVAI-----------------TEDG-PVLLEGNARWDPGLM 263 (285)
T ss_pred HHHHHHHHHHHHHHCCCCCeEEEEEEE-----------------cCCC-cEEEEeeCCCCCCcH
Confidence 578899999999888777899999877 6789 999999999 8864
No 176
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=98.13 E-value=4.3e-05 Score=81.60 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=91.6
Q ss_pred CCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCC---CCcceEEeCCHHHHHHHHHHhHhhCCCCeEEE
Q 004630 4 QGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAG---SSIGVTVAYGVIDSLKKAKGIILEGIDDRVVV 80 (741)
Q Consensus 4 ~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~---~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlV 80 (741)
..|.+|+++.+.+.. +++.+..+.. .+.||+|+||.... .|..+.++.+.+.+. . ...++++
T Consensus 111 ~~i~~P~~v~i~~~~---~~~~~~l~~a---gL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~-~--------L~~P~Vl 175 (307)
T PF05770_consen 111 GRIRVPKFVVINSDA---ESLPELLKEA---GLKFPLICKPLVACGSADSHKMAIVFNEEGLK-D--------LKPPCVL 175 (307)
T ss_dssp TTEE-S-EEEESSSH---CCHHHHHHCT---TS-SSEEEEESB-SSTSCCCEEEEE-SGGGGT-T----------SSEEE
T ss_pred CcccCCceEEEcCCH---HHHHHHHHHC---CCcccEEeeehhhcCCccceEEEEEECHHHHh-h--------cCCCEEE
Confidence 467899999988543 2333333332 45789999997543 378899999999853 2 2468999
Q ss_pred eeccC-CCeEEEEEEEecCCCCccceeEecceEEE-EeccCccccccCCcceeccc--CCCCCCCe--EEEcCCCCCHHH
Q 004630 81 ELFLE-GGSEFTAIVLDVGSGFDCHPVVLLPTEVE-LQFQGSVDVREKDAIFNYRR--KYLPTQQV--AYHTPPRFPIVV 154 (741)
Q Consensus 81 Ee~i~-G~~E~sv~vl~~~~~~~~~~~~~~~~ei~-~~~~~~~~~~~~~~~~~~~~--k~~~~~~~--~~~~P~~~~~~~ 154 (741)
||||. ||.=|-|-|++ +... ++ ++. +......+......++++.. +....... ....+......-
T Consensus 176 QeFVNHggvLfKVyVvG----d~v~-~v----~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~ 246 (307)
T PF05770_consen 176 QEFVNHGGVLFKVYVVG----DKVF-VV----KRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPP 246 (307)
T ss_dssp EE----TTEEEEEEEET----TEEE-EE----EEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--
T ss_pred EEeecCCCEEEEEEEec----CEEE-EE----ECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccCCC
Confidence 99993 45999999994 3211 11 110 00000000011223344432 11111000 000011111112
Q ss_pred HHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCC-CcEEEEeecCCCCCCC
Q 004630 155 INSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGMEQ 217 (741)
Q Consensus 155 ~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~-G~~~vlEiN~~Pgl~~ 217 (741)
.+.++++|..+=++||+. ...+|++.+ +.. |+.||++||--||...
T Consensus 247 ~~~v~~la~~LR~~lgL~-LFgfDvI~~----------------~~t~~~~~VIDINyFPgY~~ 293 (307)
T PF05770_consen 247 DELVEKLAKELRRALGLT-LFGFDVIRE----------------NGTGGRYYVIDINYFPGYKK 293 (307)
T ss_dssp HHHHHHHHHHHHHHHT-S-EEEEEEEEG----------------CCT-SSEEEEEEEES--TTT
T ss_pred HHHHHHHHHHHHHHhCcc-eeeeEEEEE----------------cCCCCcEEEEEeccCCCccC
Confidence 356788999999999987 888999874 344 7899999999999765
No 177
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=98.07 E-value=0.00012 Score=76.22 Aligned_cols=206 Identities=14% Similarity=0.030 Sum_probs=108.9
Q ss_pred HHHhhChHHHHHHHHHHHHcC--CCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccch
Q 004630 459 SKTCMDKVATSLALNHLADLG--VLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDL 536 (741)
Q Consensus 459 sal~~DK~~tk~~~~~l~~~G--Ip~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL 536 (741)
...|.||+..++. +++.+ ...||...+.... .++ . ...| ..++|+||++++|+..|...++.-+.
T Consensus 15 ~~~~~DK~~VR~y---v~~~~g~~~l~pll~v~~~~------~~i-~--~~~L-p~~fViK~nhgsg~~~i~~dk~~~d~ 81 (239)
T PF14305_consen 15 FTKLADKYAVREY---VEEKIGEEYLPPLLGVYDNP------DDI-D--FDSL-PDKFVIKPNHGSGSNIIVRDKSKLDI 81 (239)
T ss_pred ceecchHHHHHHH---HHHhCCCceECceeecCCCh------hhh-h--hhcC-CCCEEEEEecCCCcEEEEeCCcccCH
Confidence 4568899999998 77765 2345544443221 111 1 2355 57899999999999888887766666
Q ss_pred HHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC
Q 004630 537 TVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 616 (741)
Q Consensus 537 ~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~ 616 (741)
......+...++..... .++ ...-....+.+|||+++.... | ..-.++-+-|+.+.
T Consensus 82 ~~~~~~~~~wl~~~~~~-~~~----E~~Y~~i~prIivE~~l~~~~------------------~-~~~~DYKf~cF~G~ 137 (239)
T PF14305_consen 82 EEAKKKLNRWLKKDYYY-QSR----EWHYKNIKPRIIVEELLEDED------------------G-KIPRDYKFFCFNGK 137 (239)
T ss_pred HHHHHHHHHHhhhcccc-ccc----cccCcCCCceEEEEeccccCC------------------C-CCcceEEEEEECCE
Confidence 54333343333221000 000 000111257899999997641 1 00136777666532
Q ss_pred CCceecCceEEEccCCccccccccccCCCceEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEE
Q 004630 617 GSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVL 696 (741)
Q Consensus 617 ~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~ 696 (741)
...+.+.-.........+||-+=+..+-....-..... --++..+++.++|+++.+-+ .++||||... +|++|
T Consensus 138 ~~~i~v~~~r~~~~~~~~yd~dw~~l~~~~~~~~~~~~--~kP~~l~emi~iA~~Ls~~f---~fvRVDlY~~--~~~iy 210 (239)
T PF14305_consen 138 PKFIQVDSDRFGNHKRNFYDRDWNRLPFRSDYPPDEDI--PKPKNLEEMIEIAEKLSKGF---PFVRVDLYNV--DGKIY 210 (239)
T ss_pred EEEEEEEeCCCCCeEEEEECcccCCCccccCCCCCCCC--CCChhHHHHHHHHHHHccCC---CEEEEEEEEe--CCcEE
Confidence 11110000000001122444321111110000011111 13456678888887777653 4899999887 58999
Q ss_pred EEecCCCCCCCC
Q 004630 697 IIEVNTVPGMTP 708 (741)
Q Consensus 697 viEINt~Pg~t~ 708 (741)
|-|+-..||-.-
T Consensus 211 FGElTf~p~~G~ 222 (239)
T PF14305_consen 211 FGELTFTPGAGF 222 (239)
T ss_pred EEeeecCCCCcC
Confidence 999998887553
No 178
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.05 E-value=0.00017 Score=80.59 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=70.0
Q ss_pred hChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC--CCCc--ceEEeCCccchHH
Q 004630 463 MDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD--GCST--GVARLCCAEDLTV 538 (741)
Q Consensus 463 ~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~--gsS~--GV~~v~~~~eL~~ 538 (741)
.+++.+|++ |+++|||+|++..+.+.+ ...++..++++||+++||... |.|. ||.++.+.+++.+
T Consensus 3 l~e~~ak~l---L~~~gIpvp~~~~~~~~~--------ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~ 71 (388)
T PRK00696 3 LHEYQAKEL---FAKYGVPVPRGIVATTPE--------EAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEARE 71 (388)
T ss_pred CCHHHHHHH---HHHcCCCCCCCeeeCCHH--------HHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHH
Confidence 367889998 999999999999887543 223445567249999999743 2232 8999888888774
Q ss_pred HHHHHHHHHhcCCCCCc-ccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC
Q 004630 539 YVKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 616 (741)
Q Consensus 539 ~~~al~~a~~~~~~~~l-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~ 616 (741)
+.++.+.. .+ ....+ .+......++||+++++. +|+.+++..+.
T Consensus 72 ---a~~~i~~~----~~~~~~~~---~~g~~~~gvlVe~~~~~~------------------------~E~~vg~~~D~ 116 (388)
T PRK00696 72 ---FAKQILGM----TLVTHQTG---PKGQPVNKVLVEEGADIA------------------------KEYYLSIVLDR 116 (388)
T ss_pred ---HHHHhhcc----ceeeeccC---CCCCEEeEEEEEeccCCC------------------------ceEEEEEEEcC
Confidence 33333321 00 00000 000112469999999843 49999998875
No 179
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.99 E-value=4e-05 Score=82.18 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=28.7
Q ss_pred CcceeEEEEEEEcCCCcEEEEecCCCCCCCCCchHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004630 678 LEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGS 737 (741)
Q Consensus 678 ~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~a~ 737 (741)
+.-+.++||++|. ++++|++|||..|.++..+. +-.++...||+.++
T Consensus 235 ~Fel~G~DfmlD~-~~kpwLLEvN~~Psl~~~~~------------~~~~~~~~li~d~l 281 (292)
T PF03133_consen 235 CFELFGFDFMLDE-DLKPWLLEVNSNPSLSTSTP------------VDKELKPQLIDDLL 281 (292)
T ss_dssp E-EEEEEEEEEBT-TS-EEEEEEESS------TT------------THHHHHHHHHHHTT
T ss_pred ccceeeeEEEecC-CCeEEEeeCCCCCCcccCCH------------hHHHHHHHHHHHHh
Confidence 3357899999995 79999999999999977652 22456666665544
No 180
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.0005 Score=72.06 Aligned_cols=182 Identities=15% Similarity=0.083 Sum_probs=110.5
Q ss_pred CCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCC-----CCeEEEeeccCCCeEEEEEEEecCCCCccceeEecc
Q 004630 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGI-----DDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 110 (741)
Q Consensus 36 ~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~-----~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~ 110 (741)
+..|++||+...-+++|-+++.|.+|+.+++.+++..+- -..+.||||+-| .-|-...+-. |+.
T Consensus 149 Idr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS-------~i~--- 217 (361)
T COG1759 149 IDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYS-------PIK--- 217 (361)
T ss_pred cCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeec-------ccc---
Confidence 445999999998889999999999999998888765221 136889999998 7776665521 110
Q ss_pred eEEEEeccCc-cccccCCcceecccCCC------CCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHh------CCCCeeEe
Q 004630 111 TEVELQFQGS-VDVREKDAIFNYRRKYL------PTQQVAYHTPPRFPIVVINSIREGASLLFQRL------GLCDFARI 177 (741)
Q Consensus 111 ~ei~~~~~~~-~~~~~~~~~~~~~~k~~------~~~~~~~~~P~~~~~~~~~~i~~~a~~~~~aL------g~~g~~~i 177 (741)
.++++-.-+- .+.+ -+++.....+.+ +.-..-...|..+-+.+..++-+++.+.+++. |+-|.+..
T Consensus 218 ~~lEl~g~D~R~Esn-~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~PG~iGpFcL 296 (361)
T COG1759 218 DRLELLGIDRRYESN-LDGLVRLPAKDQLELNLEPTYVVVGNIPVVLRESLLPKVFEMGERFVEATKELVPPGIIGPFCL 296 (361)
T ss_pred CceeEeeeeheeecc-chhhccCCHHHHhhcCCCceEEEECCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcccceee
Confidence 1111110000 0000 112222111111 11001123566677778888888888877643 45577777
Q ss_pred eeeecCCCCccccccccccCcCCCCcEEEEeecCCCC-CCC----CChHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004630 178 DGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG-MEQ----TSFLFQQASKVGFSHSNILRTIIGHACSR 246 (741)
Q Consensus 178 D~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pg-l~~----~s~~~~~~~~~G~~~~~ll~~ii~~a~~r 246 (741)
+..+ |++=++++.|+-+|-+ -|. .|.+..+-...++|...=|.+=|+.|+++
T Consensus 297 q~~~-----------------t~dl~~vVfevS~Ri~gGTNv~~~GspYs~l~~~~pms~GrRIA~EIk~A~e~ 353 (361)
T COG1759 297 QTIV-----------------TDDLEFVVFEVSARIVGGTNVYMGGSPYSNLYWGEPMSTGRRIAREIKEAIEL 353 (361)
T ss_pred eeee-----------------cCCccEEEEEEeccccCCcccccCCCcchhhhcCCCcchhhHHHHHHHHHHHh
Confidence 7765 5677899999987542 221 44454555556777777777777777765
No 181
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.76 E-value=0.00021 Score=76.64 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=23.1
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccC
Q 004630 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 85 (741)
Q Consensus 39 P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~ 85 (741)
-+|+||..++.|+||.++++.+++.+. .......+|||+||+
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~-----~~~~~~~~vvQkYI~ 108 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF-----SKNKNQPYVVQKYIE 108 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC-----HCCTTS-EEEEE--S
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH-----hhhhhhhhhhhhccC
Confidence 499999999999999999999886532 113457899999995
No 182
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00059 Score=71.90 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=129.8
Q ss_pred CccEEEEccCCC-CCCch---HHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcC---CCccCeEEEeCcccc
Q 004630 422 NQATVFIAVHGG-IGEDG---TLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG---VLTINKDVRRKEDLL 494 (741)
Q Consensus 422 ~~Dvvf~~lhG~-~GEdg---~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~G---Ip~p~~~~v~~~e~~ 494 (741)
.+|+||+--|.. +.+++ +|---|...|||.+.+=..+...|--.+..+++.++....| +|-.+........
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnHK-- 232 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNHK-- 232 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHHhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCch--
Confidence 479999998874 33333 56667889999999765555555544455556544556666 5544443332211
Q ss_pred CCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEE
Q 004630 495 KTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIF 574 (741)
Q Consensus 495 ~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlV 574 (741)
.....- .||+|||=..+.++.|=.+|+|.+|+.+....++-. +..+-+
T Consensus 233 ---------~m~s~~-tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~----------------------~Tyat~ 280 (488)
T KOG3895|consen 233 ---------EMLSQP-TYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT----------------------KTYATA 280 (488)
T ss_pred ---------hhccCC-CCcEEEEecccccccceeeecchhhhHhHHHHHHHH----------------------hhhhhc
Confidence 111222 599999999999999999999999998754444433 245678
Q ss_pred eecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCCCCceecCceEEEccCCccccccccccCCCceEEcCCCC
Q 004630 575 EPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPA 654 (741)
Q Consensus 575 EefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~~~~Pa~~ 654 (741)
|+||+.. -++.+.-+|.+-+.. ++..-.+.| |-+.|+.. +.
T Consensus 281 epFiDaK------------------------YDiriQKIG~nYKay-----mRtsIsgnW-----KtNtGSam-LE---- 321 (488)
T KOG3895|consen 281 EPFIDAK------------------------YDIRIQKIGHNYKAY-----MRTSISGNW-----KTNTGSAM-LE---- 321 (488)
T ss_pred ccccccc------------------------ceeehhhhhhhHHHH-----hhhhhccCc-----ccCchHHH-HH----
Confidence 9999975 266666566542110 010001111 11222210 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCC--CCCCCCC
Q 004630 655 SIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT--VPGMTPS 709 (741)
Q Consensus 655 ~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt--~Pg~t~~ 709 (741)
.-...++.+.....+-+.+|.-.+|-||....+ ||+=|++|||- +|=+..+
T Consensus 322 ---QIamseRyklwvdtcse~fGgldICav~alhsK-dGrd~i~eV~d~smpliGeh 374 (488)
T KOG3895|consen 322 ---QIAMSERYKLWVDTCSEMFGGLDICAVKALHSK-DGRDYIIEVMDSSMPLIGEH 374 (488)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCCcceEEeeeeecc-cchhheeeeccccccccccc
Confidence 012334556666666778888889999988774 79999999995 5655554
No 183
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=97.68 E-value=0.00018 Score=72.64 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=60.1
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCC----CcceEEeCCHHHHHHHHHHhHhhCC--
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS----SIGVTVAYGVIDSLKKAKGIILEGI-- 74 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~----S~GV~~v~~~~e~~~~~~~~~~~~~-- 74 (741)
|+++|||+|++..+++.+ ++.+.+..++. .++||||-.-.+ +-||.+++|.+|+...+.+++....
T Consensus 11 l~~~gi~vp~g~~a~s~e----ea~~~~~~l~~----~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T 82 (202)
T PF08442_consen 11 LRKYGIPVPRGVVATSPE----EAREAAKELGG----KPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKT 82 (202)
T ss_dssp HHCTT----SEEEESSHH----HHHHHHHHHTT----SSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-
T ss_pred HHHcCCCCCCeeecCCHH----HHHHHHHHhCC----CcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEe
Confidence 578999999999998877 66666655543 268999954333 4678999999999988888774211
Q ss_pred ---------CCeEEEeeccCCCeEEEEEEEecCC
Q 004630 75 ---------DDRVVVELFLEGGSEFTAIVLDVGS 99 (741)
Q Consensus 75 ---------~~~vlVEe~i~G~~E~sv~vl~~~~ 99 (741)
-..++||++++=.+|+=++++-+.+
T Consensus 83 ~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~ 116 (202)
T PF08442_consen 83 KQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRE 116 (202)
T ss_dssp TTSTTTEEEE--EEEEE---CCEEEEEEEEEETT
T ss_pred eecCCCCCEeeEEEEEecCccCceEEEEEEeccC
Confidence 1368999999756999999887643
No 184
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=97.62 E-value=0.0013 Score=73.33 Aligned_cols=90 Identities=17% Similarity=0.021 Sum_probs=68.0
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCcc-EEEecCC----CCCCcceEEeCCHHHHHHHHHHhHhhC--
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGK-VVVKPTR----AGSSIGVTVAYGVIDSLKKAKGIILEG-- 73 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P-~VvKP~~----~~~S~GV~~v~~~~e~~~~~~~~~~~~-- 73 (741)
|+++|||+|++..+.+.+ ++.+.++++| || +|+|+.. -+-+-||.+..|.+|+.+++.+++...
T Consensus 12 L~~yGIpvp~~~~~~~~~----ea~~~a~~lg-----~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 12 LASFGVAVPRGALAYSPE----QAVYRARELG-----GWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHcCCCCCCceEECCHH----HHHHHHHHcC-----CCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 568999999999988776 6666666554 45 6999732 223578999999999988888876431
Q ss_pred ---------CCCeEEEeeccCCCeEEEEEEEecCC
Q 004630 74 ---------IDDRVVVELFLEGGSEFTAIVLDVGS 99 (741)
Q Consensus 74 ---------~~~~vlVEe~i~G~~E~sv~vl~~~~ 99 (741)
.-..++||+++++++|+-+++..+..
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~ 117 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRK 117 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCC
Confidence 11369999999867999999998653
No 185
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.50 E-value=0.0017 Score=63.96 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=94.7
Q ss_pred HHHHHHhhChHHHH-HHHHHHHHc---CCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCCcceEEeC
Q 004630 456 VMASKTCMDKVATS-LALNHLADL---GVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCSTGVARLC 531 (741)
Q Consensus 456 ~~asal~~DK~~tk-~~~~~l~~~---GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS~GV~~v~ 531 (741)
..+.-.+.||-+.. +++++.++. .+|-.+.....+.. + ....- .||+|||--...++.|=.+|+
T Consensus 3 L~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~-------e----m~s~~-~fPvVvKvG~~h~G~GKvkv~ 70 (203)
T PF02750_consen 3 LHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHR-------E----MLSAP-RFPVVVKVGHAHAGMGKVKVD 70 (203)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGG-------G----GCS-S-SSSEEEEESS-STTTTEEEE-
T ss_pred ccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChh-------h----hccCC-CCCEEEEEccccCceeEEEEc
Confidence 45566677876654 222223343 46654444443321 1 11222 699999999999999999999
Q ss_pred CccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEE
Q 004630 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVG 611 (741)
Q Consensus 532 ~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~ 611 (741)
|..++.++...+... ...+-+|+||+.. .++.+.
T Consensus 71 n~~~~qDi~sll~~~----------------------~~Y~T~EPfId~k------------------------yDirvq 104 (203)
T PF02750_consen 71 NQQDFQDIASLLAIT----------------------KDYATTEPFIDAK------------------------YDIRVQ 104 (203)
T ss_dssp SHHHHHHHHHHHHHH----------------------TS-EEEEE---EE------------------------EEEEEE
T ss_pred cHHHHHHHHHHHHhc----------------------CceEEeeccccce------------------------eEEEEE
Confidence 999988755444432 4678999999875 478887
Q ss_pred EEcCCCCceecCceEEEccCCccccccccccCCCce-EEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEc
Q 004630 612 VIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGI-NLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAFVNV 690 (741)
Q Consensus 612 vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~~-~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~ 690 (741)
-+|++- .+. ++-.-++.| |-+.|+.. ..++ +.++.+.-+..+.+.+|.-.++.||.+..+
T Consensus 105 kIG~~y--kA~---~R~sis~nW-----K~N~gsa~lEqi~---------~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k 165 (203)
T PF02750_consen 105 KIGNNY--KAY---MRTSISGNW-----KANTGSAMLEQIA---------MTERYKLWVDECSELFGGLDICAVDAIHGK 165 (203)
T ss_dssp EETTEE--EEE---EEEESSSTS-----STTSSSEEEEEE------------HHHHHHHHHHGGGGG--SEEEEEEEEET
T ss_pred EEcCeE--EEE---EEccccccc-----cccccchheeecC---------CChHHHHHHHHHHHHcCCccEEEEEEEEcC
Confidence 777641 111 121112222 22333322 1222 235666677777788877779999999885
Q ss_pred CCCcEEEEecCC
Q 004630 691 DNGEVLIIEVNT 702 (741)
Q Consensus 691 ~~g~~~viEINt 702 (741)
||+-|++|+|-
T Consensus 166 -dGke~Iievnd 176 (203)
T PF02750_consen 166 -DGKEYIIEVND 176 (203)
T ss_dssp -TS-EEEEEEE-
T ss_pred -CCCEEEEEecC
Confidence 79999999995
No 186
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.38 E-value=0.0022 Score=66.73 Aligned_cols=149 Identities=21% Similarity=0.291 Sum_probs=82.4
Q ss_pred CCCCCccEEEecCCCCCCcceEEeCC---HHHHHHHHHHhHhh------------CCCCeEEEeeccC--CC---eEEEE
Q 004630 33 LDPNSGKVVVKPTRAGSSIGVTVAYG---VIDSLKKAKGIILE------------GIDDRVVVELFLE--GG---SEFTA 92 (741)
Q Consensus 33 ~~~~~~P~VvKP~~~~~S~GV~~v~~---~~e~~~~~~~~~~~------------~~~~~vlVEe~i~--G~---~E~sv 92 (741)
++....++||||+.++++.+|....+ ..++...+.+.+.. .....+|||++|. ++ .+|-+
T Consensus 52 ~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf 131 (239)
T PF14305_consen 52 FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKF 131 (239)
T ss_pred hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEE
Confidence 34455689999999999888877654 33333333332221 1135899999994 22 57888
Q ss_pred EEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCC-CeEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 004630 93 IVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQ-QVAYHTPPRFPIVVINSIREGASLLFQRLGL 171 (741)
Q Consensus 93 ~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~P~~~~~~~~~~i~~~a~~~~~aLg~ 171 (741)
-++. | .+..+. +...- ..+....++|.+-+..+.. ......+.. -+...+++.++|+++.+.
T Consensus 132 ~cF~---G---~~~~i~---v~~~r----~~~~~~~~yd~dw~~l~~~~~~~~~~~~~-kP~~l~emi~iA~~Ls~~--- 194 (239)
T PF14305_consen 132 FCFN---G---KPKFIQ---VDSDR----FGNHKRNFYDRDWNRLPFRSDYPPDEDIP-KPKNLEEMIEIAEKLSKG--- 194 (239)
T ss_pred EEEC---C---EEEEEE---EEeCC----CCCeEEEEECcccCCCccccCCCCCCCCC-CChhHHHHHHHHHHHccC---
Confidence 8884 2 233321 11110 0000122333221111110 000111111 234457777788887765
Q ss_pred CCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCCC
Q 004630 172 CDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGME 216 (741)
Q Consensus 172 ~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl~ 216 (741)
-.+.||||.. .+|++||-|+...||-.
T Consensus 195 f~fvRVDlY~------------------~~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 195 FPFVRVDLYN------------------VDGKIYFGELTFTPGAG 221 (239)
T ss_pred CCEEEEEEEE------------------eCCcEEEEeeecCCCCc
Confidence 3489999985 46889999999888744
No 187
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.30 E-value=0.0051 Score=66.68 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=69.5
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCC--CCC--CcceEEeCCHHHHHHHHHHhHhhCC--
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR--AGS--SIGVTVAYGVIDSLKKAKGIILEGI-- 74 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~--~~~--S~GV~~v~~~~e~~~~~~~~~~~~~-- 74 (741)
|+++|||+|+.+...+.+ ++.+++++++. .|+|||+-- ||. +-||.++.|.+|+.+++.+++...+
T Consensus 12 f~~~GiPvp~g~v~~s~e----ea~~~a~~lg~----~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~ 83 (387)
T COG0045 12 FAKYGIPVPPGYVATSPE----EAEEAAKELGG----GPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQT 83 (387)
T ss_pred HHHcCCCCCCceeeeCHH----HHHHHHHHhCC----CcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCccccc
Confidence 468999999999998877 77777776652 599999953 222 3589999999999999999875211
Q ss_pred ------CCeEEEeeccC-CCeEEEEEEEecCC
Q 004630 75 ------DDRVVVELFLE-GGSEFTAIVLDVGS 99 (741)
Q Consensus 75 ------~~~vlVEe~i~-G~~E~sv~vl~~~~ 99 (741)
-..++||++++ =.+||=++++-+.+
T Consensus 84 ~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~ 115 (387)
T COG0045 84 DIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRS 115 (387)
T ss_pred CcCCceeeEEEEEecCCCccceEEEEEEEEcC
Confidence 13799999997 42499999887644
No 188
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0078 Score=63.35 Aligned_cols=214 Identities=17% Similarity=0.090 Sum_probs=124.8
Q ss_pred ccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhh
Q 004630 429 AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSK 508 (741)
Q Consensus 429 ~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~ 508 (741)
+=||.+-.--.+.+..+.+-+|+.|+-..- ..-.|...-..+ |+++||+.|+-+. +. ++
T Consensus 90 IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lL-rwE~~~~~~~~l---LekAgi~~P~~~~--~P---------------ee 148 (361)
T COG1759 90 IPHGSFVAYVGYDGIENEFEVPMFGNRELL-RWEEDRKLEYKL---LEKAGLRIPKKYK--SP---------------EE 148 (361)
T ss_pred ecCCceEEEecchhhhhcccCcccccHhHh-hhhcchhhHHHH---HHHcCCCCCcccC--Ch---------------HH
Confidence 346766555556677788999999987553 333466666666 8999999998642 11 23
Q ss_pred cCCCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhccc
Q 004630 509 LQCKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQ 588 (741)
Q Consensus 509 lg~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~ 588 (741)
+ .-|++||+...-+++|-..+.+.+|+.+ .+++..+. |++.- ..-..+.|||||-|..+-
T Consensus 149 I-dr~VIVK~pgAkggRGyFiA~s~eef~e---k~e~l~~~----------gvi~~--edlkna~IeEYv~G~~f~---- 208 (361)
T COG1759 149 I-DRPVIVKLPGAKGGRGYFIASSPEEFYE---KAERLLKR----------GVITE--EDLKNARIEEYVVGAPFY---- 208 (361)
T ss_pred c-CCceEEecCCccCCceEEEEcCHHHHHH---HHHHHHHc----------CCcch--hhhhhceeeEEeecccee----
Confidence 4 4699999999988999999999999875 33433331 11100 002568899999997332
Q ss_pred ccccchhhhhhcCCCceeEEEEEEEcCC--CCceecCceEEEcc-CCccccccccccCC---CceE----EcCCCCCCCC
Q 004630 589 STNKNADRLMWKGNSRWVEITVGVIGKC--GSMHSLMPSVTVKE-SGDILSLEEKFQGG---TGIN----LTPPPASIMS 658 (741)
Q Consensus 589 ~~~~~~~~~~~~g~~~~~Eisv~vl~~~--~~~~~~~~~~~i~~-~~~~~d~~~ky~~g---~~~~----~~Pa~~~~l~ 658 (741)
...+... +..-.+.-..+... -++++...++.+-. ...+ ..|.. +-
T Consensus 209 ---------------------~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~v---lR 264 (361)
T COG1759 209 ---------------------FHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPVV---LR 264 (361)
T ss_pred ---------------------eeeeeccccCceeEeeeeheeeccchhhccCCHHHHhhcCCCceEEEECCcchh---hH
Confidence 2222111 00000000011111 01222222222100 0000 13433 45
Q ss_pred HHHHHHHHHHHHHHHHHc------CCcceeEEEEEEEcCCCcEEEEecCC-CCCCCC
Q 004630 659 TEALDKCKQRIELIANAL------QLEGFSRIDAFVNVDNGEVLIIEVNT-VPGMTP 708 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aL------g~~G~~rvDf~v~~~~g~~~viEINt-~Pg~t~ 708 (741)
+.++.++-+++.+..++- |+-|...++.++++ |=++++.|+.+ ++|-|.
T Consensus 265 ESLL~~vfe~ger~V~a~kel~~PG~iGpFcLq~~~t~-dl~~vVfevS~Ri~gGTN 320 (361)
T COG1759 265 ESLLPKVFEMGERFVEATKELVPPGIIGPFCLQTIVTD-DLEFVVFEVSARIVGGTN 320 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccceeeeeeecC-CccEEEEEEeccccCCcc
Confidence 666777777777666443 56788999999995 68899999987 344444
No 189
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=97.23 E-value=0.0053 Score=68.82 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=63.9
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecC--CCCCC---------cceEEeCCHHHHHHHHHHh
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPT--RAGSS---------IGVTVAYGVIDSLKKAKGI 69 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~--~~~~S---------~GV~~v~~~~e~~~~~~~~ 69 (741)
|+++|||+|++..+.+.+ ++.+.++.++ +.++|+|+|+- .||.+ -||.++++ +|+.+++.++
T Consensus 39 L~~~GIpvp~~~va~t~e----ea~~aa~~l~--~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~~i 111 (422)
T PLN00124 39 MSKYGVNVPKGAAASSLD----EVKKALEKMF--PDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEELAGKM 111 (422)
T ss_pred HHHcCCCCCCceeeCCHH----HHHHHHHHhc--ccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHHHHHH
Confidence 568999999999988766 6666665542 23569999998 34433 44677767 8888888777
Q ss_pred HhhCC-----------CCeEEEeeccCCCeEEEEEEEecC
Q 004630 70 ILEGI-----------DDRVVVELFLEGGSEFTAIVLDVG 98 (741)
Q Consensus 70 ~~~~~-----------~~~vlVEe~i~G~~E~sv~vl~~~ 98 (741)
+.... -+.++|||.+.-++|+=+++..|.
T Consensus 112 l~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr 151 (422)
T PLN00124 112 LGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDR 151 (422)
T ss_pred hccchhhcccCCCCceeceEEEEEeecCCceEEEEEEecc
Confidence 64311 125776666654599999999764
No 190
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.11 E-value=0.0089 Score=64.87 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCC----cceEEeCCccchHHHH
Q 004630 465 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS----TGVARLCCAEDLTVYV 540 (741)
Q Consensus 465 K~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS----~GV~~v~~~~eL~~~~ 540 (741)
-+..|++ |+++|||+|+.++....+ .+.++..++++.|+|||+---.++ -||..+++.++..+
T Consensus 5 EYqaKel---f~~~GiPvp~g~v~~s~e--------ea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~-- 71 (387)
T COG0045 5 EYQAKEL---FAKYGIPVPPGYVATSPE--------EAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKE-- 71 (387)
T ss_pred HHHHHHH---HHHcCCCCCCceeeeCHH--------HHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHH--
Confidence 4567887 999999999999887643 345667788558999999643333 37999999888774
Q ss_pred HHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccC
Q 004630 541 KALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET 580 (741)
Q Consensus 541 ~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G 580 (741)
+.+..+..- +..+....+ -..++||++++-
T Consensus 72 -~a~~~lg~~------~q~~~~G~~---v~~vlvee~~~~ 101 (387)
T COG0045 72 -AAEEILGKN------YQTDIKGEP---VNKVLVEEAVDI 101 (387)
T ss_pred -HHHHHhCcc------cccCcCCce---eeEEEEEecCCC
Confidence 334444310 111111111 478999999883
No 191
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.05 E-value=0.007 Score=59.70 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=74.7
Q ss_pred CCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccCCCeEEEEEEEecCCCCccceeEecceEEEE
Q 004630 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLPTEVEL 115 (741)
Q Consensus 36 ~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~ 115 (741)
..||+|||-....+|.|=.+++|..++.+. ..++. .....+-+|+||+-..++.|.-++ ++. .+..
T Consensus 49 ~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi-~sll~-~~~~Y~T~EPfId~kyDirvqkIG----~~y--kA~~------ 114 (203)
T PF02750_consen 49 PRFPVVVKVGHAHAGMGKVKVDNQQDFQDI-ASLLA-ITKDYATTEPFIDAKYDIRVQKIG----NNY--KAYM------ 114 (203)
T ss_dssp SSSSEEEEESS-STTTTEEEE-SHHHHHHH-HHHHH-HHTS-EEEEE---EEEEEEEEEET----TEE--EEEE------
T ss_pred CCCCEEEEEccccCceeEEEEccHHHHHHH-HHHHH-hcCceEEeeccccceeEEEEEEEc----CeE--EEEE------
Confidence 467999999988999999999999885433 33332 235688999999755677777773 322 2211
Q ss_pred eccCccccccCCcceecccCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccc
Q 004630 116 QFQGSVDVREKDAIFNYRRKYLPTQQVAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETK 195 (741)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~ 195 (741)
+. .+ +-.-|-..++.+...++ ++ ++.+.-..++.+.+|.-+++.||.+.
T Consensus 115 R~----------si-s~nWK~N~gsa~lEqi~--~~----~ryk~Wvd~~s~lfGGlDI~~v~ai~-------------- 163 (203)
T PF02750_consen 115 RT----------SI-SGNWKANTGSAMLEQIA--MT----ERYKLWVDECSELFGGLDICAVDAIH-------------- 163 (203)
T ss_dssp EE----------ES-SSTSSTTSSSEEEEEE---------HHHHHHHHHHGGGGG--SEEEEEEEE--------------
T ss_pred Ec----------cc-cccccccccchheeecC--CC----hHHHHHHHHHHHHcCCccEEEEEEEE--------------
Confidence 10 01 11123333443444444 33 45555666667778888899999886
Q ss_pred cCcCCCCcEEEEeecC
Q 004630 196 YGSTEWGTILFTDINL 211 (741)
Q Consensus 196 ~r~~~~G~~~vlEiN~ 211 (741)
.+||+-|++|+|-
T Consensus 164 ---~kdGke~Iievnd 176 (203)
T PF02750_consen 164 ---GKDGKEYIIEVND 176 (203)
T ss_dssp ---ETTS-EEEEEEE-
T ss_pred ---cCCCCEEEEEecC
Confidence 5899999999995
No 192
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=96.91 E-value=0.004 Score=63.93 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCC-----CCcceEE-eCCccchH
Q 004630 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDG-----CSTGVAR-LCCAEDLT 537 (741)
Q Consensus 464 DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~g-----sS~GV~~-v~~~~eL~ 537 (741)
+-..++++ |+.+|||+|++..+.+.+ ...+...++ +||+++|-.... ---||.. +++.+++.
T Consensus 11 ~e~e~~~l---L~~yGI~~~~~~~~~~~~--------ea~~~a~~i-g~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~ 78 (222)
T PF13549_consen 11 TEAEAKEL---LAAYGIPVPPTRLVTSAE--------EAVAAAEEI-GFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVR 78 (222)
T ss_dssp -HHHHHHH---HHTTT------EEESSHH--------HHHHHHHHH--SSEEEEEE-TT---HHHHT-EEEEE-SHHHHH
T ss_pred CHHHHHHH---HHHcCcCCCCeeEeCCHH--------HHHHHHHHh-CCCEEEEEecCCCCcCCCCCcEEECCCCHHHHH
Confidence 45667777 999999999999987643 234456688 699999987543 1235665 77888888
Q ss_pred HHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeeccc-CcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC
Q 004630 538 VYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 616 (741)
Q Consensus 538 ~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~ 616 (741)
..++.+...... ..|......++||+.+. +. .|+.+++..+.
T Consensus 79 ~a~~~l~~~~~~-------------~~p~~~~~gvlVq~m~~~~g------------------------~El~vG~~~Dp 121 (222)
T PF13549_consen 79 EAFERLRERVAA-------------HHPGARIDGVLVQEMAPSGG------------------------RELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHHH-------------H-TT----EEEEEE------------------------------EEEEEEEEEET
T ss_pred HHHHHHHHHHHH-------------hCCCCccceEEEEEcccCCc------------------------EEEEEEEEECC
Confidence 766666555432 01222346899999998 32 49999998775
No 193
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=96.62 E-value=0.0044 Score=63.61 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=52.4
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCC-----CcceEE-eCCHHHHHHHHHHhHhh--
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS-----SIGVTV-AYGVIDSLKKAKGIILE-- 72 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~-----S~GV~~-v~~~~e~~~~~~~~~~~-- 72 (741)
|+.+|||+|++..+++.+ ++.++++++|+ |+++|-.+-.- --||.+ +.|.+++.++..++...
T Consensus 19 L~~yGI~~~~~~~~~~~~----ea~~~a~~ig~-----PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~ 89 (222)
T PF13549_consen 19 LAAYGIPVPPTRLVTSAE----EAVAAAEEIGF-----PVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVA 89 (222)
T ss_dssp HHTTT------EEESSHH----HHHHHHHHH-S-----SEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHH
T ss_pred HHHcCcCCCCeeEeCCHH----HHHHHHHHhCC-----CEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHH
Confidence 467999999999998876 66667766555 99999875432 246766 77888876665554431
Q ss_pred -----CCCCeEEEeeccC-CCeEEEEEEEecCC
Q 004630 73 -----GIDDRVVVELFLE-GGSEFTAIVLDVGS 99 (741)
Q Consensus 73 -----~~~~~vlVEe~i~-G~~E~sv~vl~~~~ 99 (741)
.....++||+.+. +|.|+.|.+..|..
T Consensus 90 ~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~ 122 (222)
T PF13549_consen 90 AHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQ 122 (222)
T ss_dssp HH-TT----EEEEEE------EEEEEEEEEETT
T ss_pred HhCCCCccceEEEEEcccCCcEEEEEEEEECCC
Confidence 1235899999998 55999999998743
No 194
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=96.56 E-value=0.081 Score=59.48 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcC--CCcEEEecCCCCCC-----------cceEEe
Q 004630 464 DKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQ--CKTLCVKPARDGCS-----------TGVARL 530 (741)
Q Consensus 464 DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg--~~PvvVKP~~~gsS-----------~GV~~v 530 (741)
.-+..|++ |+++|||+|++..+...+ ...+...+++ ++|+|+|+.-..|+ -||.++
T Consensus 31 ~EyqaK~L---L~~~GIpvp~~~va~t~e--------ea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~ 99 (422)
T PLN00124 31 HEYQGAEL---MSKYGVNVPKGAAASSLD--------EVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIV 99 (422)
T ss_pred CHHHHHHH---HHHcCCCCCCceeeCCHH--------HHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEEC
Confidence 46677887 999999999998887543 2233445663 48999999843333 346666
Q ss_pred CCccchHH
Q 004630 531 CCAEDLTV 538 (741)
Q Consensus 531 ~~~~eL~~ 538 (741)
++ +++.+
T Consensus 100 ~~-eea~~ 106 (422)
T PLN00124 100 KK-DKAEE 106 (422)
T ss_pred CH-HHHHH
Confidence 55 66553
No 195
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.43 E-value=0.13 Score=57.63 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCc-EEEecCC----CCCCcceEEeCCccchHHH
Q 004630 465 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LCVKPAR----DGCSTGVARLCCAEDLTVY 539 (741)
Q Consensus 465 K~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~P-vvVKP~~----~gsS~GV~~v~~~~eL~~~ 539 (741)
-+..|++ |+++|||+|++..+...+ ...+..+++ ++| +++|... -|-+-||.+..+.+++.+
T Consensus 5 E~eak~l---L~~yGIpvp~~~~~~~~~--------ea~~~a~~l-g~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~- 71 (392)
T PRK14046 5 EYQAKEL---LASFGVAVPRGALAYSPE--------QAVYRAREL-GGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRD- 71 (392)
T ss_pred HHHHHHH---HHHcCCCCCCceEECCHH--------HHHHHHHHc-CCCcEEEEeeeccCCCCcCCeEEEECCHHHHHH-
Confidence 4566777 999999999999886543 234455678 585 6999732 123457888877777764
Q ss_pred HHHHHHHHhcCCCCCc-ccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEEEEcCC
Q 004630 540 VKALEECLLRIPPNSF-SRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVGVIGKC 616 (741)
Q Consensus 540 ~~al~~a~~~~~~~~l-~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~vl~~~ 616 (741)
+.++.+.. .+ .+.+++- ...-..++||+.+++. +|+-+++..+.
T Consensus 72 --a~~~ll~~----~~~~~~~~~~---g~~v~~vlVe~~~~~~------------------------~E~ylgi~~D~ 116 (392)
T PRK14046 72 --AAEDLLGK----KLVTHQTGPE---GKPVQRVYVETADPIE------------------------RELYLGFVLDR 116 (392)
T ss_pred --HHHHHhcc----hhhhhccCCC---CCeeeeEEEEEecCCC------------------------cEEEEEEEECC
Confidence 33333321 00 0001000 0113679999999864 59999888764
No 196
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=96.38 E-value=0.019 Score=58.08 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCCC----cceEEeCCccchHHHH
Q 004630 465 KVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGCS----TGVARLCCAEDLTVYV 540 (741)
Q Consensus 465 K~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gsS----~GV~~v~~~~eL~~~~ 540 (741)
-+..|++ |+++|||+|++.++...+ ....+...++..++||||--..|+ -||.++++.++..+
T Consensus 4 EyqaK~l---l~~~gi~vp~g~~a~s~e--------ea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~-- 70 (202)
T PF08442_consen 4 EYQAKEL---LRKYGIPVPRGVVATSPE--------EAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKE-- 70 (202)
T ss_dssp HHHHHHH---HHCTT----SEEEESSHH--------HHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHH--
T ss_pred HHHHHHH---HHHcCCCCCCeeecCCHH--------HHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHH--
Confidence 4567887 999999999999987643 234455677545689999654443 45889988877663
Q ss_pred HHHHHHHhcCCCCCcc-cccccccCCCCCCCeEEEeecccCc
Q 004630 541 KALEECLLRIPPNSFS-RAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 541 ~al~~a~~~~~~~~l~-~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
...+.+.. .+. ..+|..+.+ -..++||++++-+
T Consensus 71 -~a~~mlg~----~l~T~Qtg~~G~~---v~~vlvee~v~~~ 104 (202)
T PF08442_consen 71 -AAKEMLGK----TLKTKQTGPKGEK---VNKVLVEEFVDIK 104 (202)
T ss_dssp -HHHTTTTS----EEE-TTSTTTEEE---E--EEEEE---CC
T ss_pred -HHHHHhCC----ceEeeecCCCCCE---eeEEEEEecCccC
Confidence 22222211 111 111111111 3678999999765
No 197
>PLN02235 ATP citrate (pro-S)-lyase
Probab=96.35 E-value=0.091 Score=58.58 Aligned_cols=94 Identities=23% Similarity=0.219 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHc-----CCCccCeEEE-eCccccCCchhhHHHHHHhh---cCCCcEEEecCCCCCCc----ceEEeC
Q 004630 465 KVATSLALNHLADL-----GVLTINKDVR-RKEDLLKTPIVDIWHELTSK---LQCKTLCVKPARDGCST----GVARLC 531 (741)
Q Consensus 465 K~~tk~~~~~l~~~-----GIp~p~~~~v-~~~e~~~~~~~~~~~~~~~~---lg~~PvvVKP~~~gsS~----GV~~v~ 531 (741)
-+..|++ |+++ |||+|...+. ...+ .+.++.++ |+.-++||||--..+++ ||.+++
T Consensus 8 EyqaK~l---l~~~~~~~~gipvP~~~v~~~~~e--------e~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~ 76 (423)
T PLN02235 8 EYDSKRL---LKEHLKRLAGIDLPIRSAQVTEST--------DFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNL 76 (423)
T ss_pred HHHHHHH---HHHhhcccCCCCCCCCeeccCCHH--------HHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeC
Confidence 3556777 8888 9999999877 4432 22334444 63235799997655554 488898
Q ss_pred CccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 532 CAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 532 ~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
+.++..+ ..+..+... +.. +|..+ .-..+|||++++-.
T Consensus 77 s~~Ea~~---~a~~~Lg~~----l~t-~g~~G----~v~~vLVEe~v~i~ 114 (423)
T PLN02235 77 DLAQVAT---FVKERLGKE----VEM-GGCKG----PITTFIVEPFVPHD 114 (423)
T ss_pred CHHHHHH---HHHHHhCCc----eEe-cCCCc----cEeEEEEEecCCCc
Confidence 8888774 333333221 100 01011 13689999998754
No 198
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.33 E-value=0.048 Score=61.34 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=35.8
Q ss_pred CcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 512 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 512 ~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
--+|+||.++.+|.||..=.+.+. +++.++++++. +.++|+|||+.-.
T Consensus 339 ~~lVLKP~D~Ygg~GV~~G~e~~~-eeW~~~l~~a~---------------------~~~yilQe~v~~~ 386 (445)
T PF14403_consen 339 DRLVLKPNDEYGGKGVYIGWETSP-EEWEAALEEAA---------------------REPYILQEYVRPP 386 (445)
T ss_pred hcEEeccccccCCCCeEECCcCCH-HHHHHHHHHHh---------------------cCCcEEEEEecCC
Confidence 468999999999999987443333 33446777765 4689999999764
No 199
>PLN02235 ATP citrate (pro-S)-lyase
Probab=96.22 E-value=0.1 Score=58.23 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=65.2
Q ss_pred CCCCCCCeEEE-ecCccchhhhhhhhhhcCCCCCCc-cEEEecCCCCC----CcceEEeCCHHHHHHHHHHhHhhCC---
Q 004630 4 QGFITVPSFLL-QGSEVNESELSNWFVTNKLDPNSG-KVVVKPTRAGS----SIGVTVAYGVIDSLKKAKGIILEGI--- 74 (741)
Q Consensus 4 ~GIp~p~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-P~VvKP~~~~~----S~GV~~v~~~~e~~~~~~~~~~~~~--- 74 (741)
.|||+|..... .+.+ ++.++++++.+ +++ ++||||--..+ +-||.+++|.+|+.+.+.+++....
T Consensus 23 ~gipvP~~~v~~~~~e----e~~~~~~~~~~--l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~ 96 (423)
T PLN02235 23 AGIDLPIRSAQVTEST----DFNELANKEPW--LSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMG 96 (423)
T ss_pred CCCCCCCCeeccCCHH----HHHHHHHhhhh--hCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEec
Confidence 49999999877 6655 66666655321 334 47999965444 4568999999999999888875321
Q ss_pred -----CCeEEEeeccCCCeEEEEEEEecCC
Q 004630 75 -----DDRVVVELFLEGGSEFTAIVLDVGS 99 (741)
Q Consensus 75 -----~~~vlVEe~i~G~~E~sv~vl~~~~ 99 (741)
-..++||++++=.+||=++++-+..
T Consensus 97 g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~ 126 (423)
T PLN02235 97 GCKGPITTFIVEPFVPHDQEFYLSIVSDRL 126 (423)
T ss_pred CCCccEeEEEEEecCCCcceEEEEEEEecC
Confidence 1378999999655999999887644
No 200
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.073 Score=59.42 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHHHHc----------------CCcceeEEEEEEEcCCCcEEEEecCCCCCCCCC
Q 004630 658 STEALDKCKQRIELIANAL----------------QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPS 709 (741)
Q Consensus 658 ~~e~~~~i~~~a~~~~~aL----------------g~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~ 709 (741)
++.+-.+|+.+..+.+.+= -|.-+.|+|+++|+ +=++|++|||--|.+...
T Consensus 439 t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDe-dLkpwLlEVNISPSLhS~ 505 (662)
T KOG2156|consen 439 TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDE-DLKPWLLEVNISPSLHSE 505 (662)
T ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecC-ccceeeEEEecccccccC
Confidence 4556677777777766321 23456899999995 689999999998887653
No 201
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=92.15 E-value=0.85 Score=42.85 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=18.8
Q ss_pred ceeEEEEEEEcCCCcEEEEecCCC
Q 004630 680 GFSRIDAFVNVDNGEVLIIEVNTV 703 (741)
Q Consensus 680 G~~rvDf~v~~~~g~~~viEINt~ 703 (741)
-..-+|+-++. +|+.+|+|+|..
T Consensus 93 ~~~vlDvg~~~-~G~~~lVE~N~~ 115 (130)
T PF14243_consen 93 PAYVLDVGVTD-DGGWALVEANDG 115 (130)
T ss_pred CeEEEEEEEeC-CCCEEEEEecCc
Confidence 34569999985 799999999974
No 202
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.69 Score=52.86 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.9
Q ss_pred eeEEEEEEEcCCCcEEEEecCCCCCCCCCc
Q 004630 681 FSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710 (741)
Q Consensus 681 ~~rvDf~v~~~~g~~~viEINt~Pg~t~~S 710 (741)
....||+++. ++++|+||||.-|.|++..
T Consensus 379 lyG~DfliD~-~lkpwLiEiNssP~~~~t~ 407 (497)
T KOG2157|consen 379 LYGFDFLIDE-ALKPWLIEINASPDLTQTT 407 (497)
T ss_pred hhCcceeecC-CCCeEEEEeecCCcccccc
Confidence 4679999995 7999999999999999975
No 203
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=0.76 Score=51.68 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=28.9
Q ss_pred EEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccC
Q 004630 40 VVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLE 85 (741)
Q Consensus 40 ~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~ 85 (741)
+||||..+..+.||.+++...+. ..+.+++||+||+
T Consensus 308 wIVkppasaRg~gIrv~~kw~q~----------pk~rpLvvQ~yie 343 (662)
T KOG2156|consen 308 WIVKPPASARGIGIRVINKWSQF----------PKDRPLVVQKYIE 343 (662)
T ss_pred EEecCcccccCcceEeccchhhC----------CCcccHHHHHHhh
Confidence 89999999999999999888773 2345677788774
No 204
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=91.16 E-value=2.6 Score=39.60 Aligned_cols=54 Identities=24% Similarity=0.219 Sum_probs=35.7
Q ss_pred cEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccCCCeEEEEEEEe
Q 004630 39 KVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96 (741)
Q Consensus 39 P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~G~~E~sv~vl~ 96 (741)
|+||||....-..-=.+..+.+++. .... ...+..+++.+.++=..|+++-++.
T Consensus 3 ~~FiKP~~~~K~F~g~V~~~~~dl~-~~~~---~~~~~~V~vSe~v~~~~E~R~fi~~ 56 (130)
T PF14243_consen 3 PVFIKPPDDDKSFTGRVFRSGEDLI-GFGS---LDPDTPVLVSEVVEIESEWRCFIVD 56 (130)
T ss_pred CeEeCCCCCCCcceeEEEcchhhcc-ccCC---CCCCceEEEeceEeeeeeEEEEEEC
Confidence 8999999855433223455555532 1111 1346789999999756999999994
No 205
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=0.97 Score=48.40 Aligned_cols=59 Identities=19% Similarity=0.092 Sum_probs=42.4
Q ss_pred CCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhCCCCeEEEeeccCCCeEEEEEEEe
Q 004630 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEGIDDRVVVELFLEGGSEFTAIVLD 96 (741)
Q Consensus 36 ~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~~~~~vlVEe~i~G~~E~sv~vl~ 96 (741)
..||+|||=..+-++.|=.+|+|.+|+.+.+.- +. -....+-+|.||+-..++.|.-++
T Consensus 238 ~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~sv-va-l~~Tyat~epFiDaKYDiriQKIG 296 (488)
T KOG3895|consen 238 PTYPVVVKVGHAHSGMGKIKVENHEDFQDIASV-VA-LTKTYATAEPFIDAKYDIRIQKIG 296 (488)
T ss_pred CCCcEEEEecccccccceeeecchhhhHhHHHH-HH-HHhhhhhccccccccceeehhhhh
Confidence 359999999999999999999999886543221 11 113467799999865666666663
No 206
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=89.83 E-value=3.1 Score=49.01 Aligned_cols=165 Identities=12% Similarity=0.078 Sum_probs=88.1
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCC-----CCCCccEEEecCCCCCCcceEEe--CC----HHHHHHHHHHh
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKL-----DPNSGKVVVKPTRAGSSIGVTVA--YG----VIDSLKKAKGI 69 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~P~VvKP~~~~~S~GV~~v--~~----~~e~~~~~~~~ 69 (741)
|+..||++|++..+..... ..++.+.++.-.. ....-|+|=||..+-. ..|.+- .+ -..+++++-..
T Consensus 138 Le~~gI~~PRya~~nr~~p-n~~~~~lie~eD~vEVnGevf~KPFVEKPVs~ED-HNIYIYYPsSaGGGsqrLFRKIgnR 215 (1018)
T KOG1057|consen 138 LEAEGIPLPRYAILNRDPP-NPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAED-HNIYIYYPSSAGGGSQRLFRKIGNR 215 (1018)
T ss_pred HHHcCCCCceeEeecCCCC-ChHHhhhhcCCCeEEEcceeccCCcccCCCCccc-ccEEEEecCCCCccHHHHHHHhccc
Confidence 4678999999988876553 4455555532211 1223489999986432 333332 22 22344444321
Q ss_pred H-------hhCCCCeEEEeeccC-CCeEEEEEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCC
Q 004630 70 I-------LEGIDDRVVVELFLE-GGSEFTAIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQ 141 (741)
Q Consensus 70 ~-------~~~~~~~vlVEe~i~-G~~E~sv~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 141 (741)
- .-+..+.+|-|||++ +|.++-|-.++- +-.+.-+ + .....|-...-.+.+
T Consensus 216 SS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp---~YaHAEa------R-----------KSPvvDGkV~Rns~G- 274 (1018)
T KOG1057|consen 216 SSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGP---DYAHAEA------R-----------KSPVVDGKVERNSDG- 274 (1018)
T ss_pred ccccCCccccccccceehhhhcCCCCccceEEeeCc---chhhhhh------c-----------cCccccceeeecCCC-
Confidence 0 002246899999994 237777776631 1000000 0 001111100011111
Q ss_pred eEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecC
Q 004630 142 VAYHTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINL 211 (741)
Q Consensus 142 ~~~~~P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~ 211 (741)
.+...|..++++. +++|.++.-|++-. ++.+|.+ -.+|+=||+++|.
T Consensus 275 KEvRYpv~Ls~~E----K~iA~KVciAF~Q~-VCGFDLL------------------Ra~G~SYVcDVNG 321 (1018)
T KOG1057|consen 275 KEVRYPVILNSSE----KQIARKVCIAFKQT-VCGFDLL------------------RANGKSYVCDVNG 321 (1018)
T ss_pred ceeeceeecChhh----HHHHhHHHhhcccc-ccchHHh------------------hcCCceEEEeccc
Confidence 3455666666544 56788888888743 6667754 2579999999995
No 207
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=86.91 E-value=1.7 Score=51.15 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=54.9
Q ss_pred EEccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHH
Q 004630 427 FIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELT 506 (741)
Q Consensus 427 f~~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~ 506 (741)
++.+|-.-----..+++.+ +.-||+-++..--.+..|.-...++ |++.||++|++..+++..-. ++....+.
T Consensus 94 LIsFhSsGFPLdKAiaY~k-LRnPFviNdL~mQyll~DRR~Vy~i---Le~~gI~~PRya~~nr~~pn----~~~~~lie 165 (1018)
T KOG1057|consen 94 LISFHSKGFPLDKAVAYAK-LRNPFVINDLDMQYLLQDRREVYSI---LEAEGIPLPRYAILNRDPPN----PKLCNLIE 165 (1018)
T ss_pred EEEeccCCCChHHHHHHHH-hcCCeeeccccHHHHHHHHHHHHHH---HHHcCCCCceeEeecCCCCC----hHHhhhhc
Confidence 4455543222224445544 5568988888888888898888776 99999999999888764321 11111111
Q ss_pred ---------hhcCCCcEEEecCCC
Q 004630 507 ---------SKLQCKTLCVKPARD 521 (741)
Q Consensus 507 ---------~~lg~~PvvVKP~~~ 521 (741)
+-+ ..|+|=||.++
T Consensus 166 ~eD~vEVnGevf-~KPFVEKPVs~ 188 (1018)
T KOG1057|consen 166 GEDHVEVNGEVF-QKPFVEKPVSA 188 (1018)
T ss_pred CCCeEEEcceec-cCCcccCCCCc
Confidence 123 47999999864
No 208
>PRK05849 hypothetical protein; Provisional
Probab=84.81 E-value=1.1e+02 Score=37.65 Aligned_cols=192 Identities=17% Similarity=0.228 Sum_probs=100.8
Q ss_pred hChHHHHHHHHHHHH--cCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCC------CCCcceE--EeCC
Q 004630 463 MDKVATSLALNHLAD--LGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARD------GCSTGVA--RLCC 532 (741)
Q Consensus 463 ~DK~~tk~~~~~l~~--~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~------gsS~GV~--~v~~ 532 (741)
.-|..+-.. |+. .|.++|+.+.+...+|.++ ....+..+...++.-|++|+.+.. .|..|.+ ..+-
T Consensus 9 ~~KA~tL~~---L~~~~~~~~i~~~~v~~~~e~~~~-~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV 84 (783)
T PRK05849 9 QTKAETLAN---LQPILKKAKILPLLLFSVREWLSN-KDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNV 84 (783)
T ss_pred chHHHHHHH---HHhhhcCCCCCCeEEeCHHhhccC-HHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecC
Confidence 346666554 788 8999999999988777653 234455555554356999998742 2445553 3221
Q ss_pred -ccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCcchhhcccccccchhhhhhcCCCceeEEEEE
Q 004630 533 -AEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRLMWKGNSRWVEITVG 611 (741)
Q Consensus 533 -~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~~~~g~~~~~Eisv~ 611 (741)
.++..++.+|+...+.-.. ...+..++||+.|.+.. .+ | +=+|..
T Consensus 85 ~~~~~~~L~~AI~~V~aS~~--------------~~~~~aVlVQ~MV~~~~-----~S-----------G----V~FTrd 130 (783)
T PRK05849 85 NADSKDQLLKAIEKVIASYG--------------TSKDDEILVQPMLEDIV-----LS-----------G----VAMSRD 130 (783)
T ss_pred CCCcHHHHHHHHHHHHHhhC--------------CCCCCeEEEEeCccCCC-----ce-----------E----EEEECC
Confidence 1222233456766664210 01146799999997420 00 0 111111
Q ss_pred EEcCCCCceecCceEEEccCCccccccccccCCCc----eEEcCCCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEE
Q 004630 612 VIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTG----INLTPPPASIMSTEALDKCKQRIELIANALQLEGFSRIDAF 687 (741)
Q Consensus 612 vl~~~~~~~~~~~~~~i~~~~~~~d~~~ky~~g~~----~~~~Pa~~~~l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~ 687 (741)
-....+.. . ++....+. -+...+|.. ..+.-.....++++..+++.+++.++-+.+|.. +.-|+|-
T Consensus 131 P~tg~~~~---~--iey~~~G~----ge~VVsG~~t~~~~~~~~~~~~~l~p~~~~~L~~la~~LE~~fg~d-pqDIEfa 200 (783)
T PRK05849 131 PESGAPYY---V--INYDESGS----TDSVTSGSGGSATTVYHYRDALVFKPPRLKKLIELIRELEALFGCD-FLDIEFA 200 (783)
T ss_pred CCCCCCce---E--EEEcCCCC----CcceecccCCCCceeeeccccccCCHHHHHHHHHHHHHHHHHcCCC-CeeeEEE
Confidence 00000000 0 00000000 000000100 000000001257888899999999988888753 6679999
Q ss_pred EEcCCCcEEEEecCCC
Q 004630 688 VNVDNGEVLIIEVNTV 703 (741)
Q Consensus 688 v~~~~g~~~viEINt~ 703 (741)
++. +|++|++-+=|+
T Consensus 201 id~-~g~L~lLQ~RPi 215 (783)
T PRK05849 201 IDE-KEELYILQVRPI 215 (783)
T ss_pred Ecc-CCEEEEEEccCC
Confidence 964 699999998653
No 209
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=80.95 E-value=3.8 Score=46.37 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=31.4
Q ss_pred cEEEecCCCCCCcceEEeC--CHHHHHHHHHHhHhhCCCCeEEEeeccC
Q 004630 39 KVVVKPTRAGSSIGVTVAY--GVIDSLKKAKGIILEGIDDRVVVELFLE 85 (741)
Q Consensus 39 P~VvKP~~~~~S~GV~~v~--~~~e~~~~~~~~~~~~~~~~vlVEe~i~ 85 (741)
-+|+||+++.+|+||.+=. +.++-.+++.+. .++++|+|||+.
T Consensus 340 ~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a----~~~~yilQe~v~ 384 (445)
T PF14403_consen 340 RLVLKPNDEYGGKGVYIGWETSPEEWEAALEEA----AREPYILQEYVR 384 (445)
T ss_pred cEEeccccccCCCCeEECCcCCHHHHHHHHHHH----hcCCcEEEEEec
Confidence 5899999999999998854 444533333333 245899999996
No 210
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=78.61 E-value=39 Score=33.55 Aligned_cols=85 Identities=9% Similarity=-0.034 Sum_probs=52.0
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHHHh------CCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCCC-CC
Q 004630 145 HTPPRFPIVVINSIREGASLLFQRL------GLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISGM-EQ 217 (741)
Q Consensus 145 ~~P~~~~~~~~~~i~~~a~~~~~aL------g~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pgl-~~ 217 (741)
..|..+-+.+..++-+++.+.+++. |+-|...++..+ |++.++++.|+.+|-+- +.
T Consensus 85 n~p~vlRESLL~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~iv-----------------t~dle~vvfevS~RI~gGTN 147 (188)
T PF06973_consen 85 NIPAVLRESLLPKVFEMGERFVEASKELVPPGMIGPFCLQSIV-----------------TDDLEFVVFEVSARIVGGTN 147 (188)
T ss_dssp EEEEEE-GGGHHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE------------------TTSSEEEEEEESSB-GGGG
T ss_pred CcccchhHhhHHHHHHHHHHHHHHHHHhcCCCccccceEEEEE-----------------cCCceEEEEEEeccccCCCC
Confidence 4566677788888888888866543 556888888876 67899999999885432 21
Q ss_pred ----CChHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 004630 218 ----TSFLFQQASKVGFSHSNILRTIIGHACSR 246 (741)
Q Consensus 218 ----~s~~~~~~~~~G~~~~~ll~~ii~~a~~r 246 (741)
.|.+..+.--..+|.-.=+.+=|+.|++.
T Consensus 148 ~~~~GspYS~l~~~~pms~GrRIA~EIk~A~e~ 180 (188)
T PF06973_consen 148 VYMGGSPYSKLYWGEPMSMGRRIAREIKEAIEE 180 (188)
T ss_dssp GGTT--CCHHHTTSS---HHHHHHHHHHHHHHT
T ss_pred CccCCCCchHHHcCCCcchhHHHHHHHHHHHHc
Confidence 34444444344566666666777777665
No 211
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=77.69 E-value=6.9 Score=42.26 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=40.5
Q ss_pred CCcEEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 511 CKTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 511 ~~PvvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
.-|+=+||..+.++.|..++.+.++|+..+.++....-. ...+++|+-++..
T Consensus 136 ~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~-------------------~~GlVLE~~L~~~ 187 (355)
T PF11379_consen 136 DGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA-------------------RHGLVLEEDLEEV 187 (355)
T ss_pred cCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH-------------------hCCEEEecccCCC
Confidence 469999999999999999999999999765555443211 2568999998764
No 212
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=69.42 E-value=69 Score=34.54 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH-HHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCC
Q 004630 659 TEALDKCKQRI-ELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTP 708 (741)
Q Consensus 659 ~e~~~~i~~~a-~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~ 708 (741)
.++.+.|.+.. ..+...+....|. +|+.++.+.++++|+|+||..+-|.
T Consensus 194 ~~I~~~I~~F~~~~I~~~~~~~~~v-~DVyi~~~~~~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 194 EEIRSKIQEFFEEHIKPKFPLDNYV-FDVYITRDKDKVWLIDFNPFGPRTD 243 (299)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEE-EEEEEcCCCCeEEEEEecCCcccCc
Confidence 45556666655 3445667777765 9999986448999999999777553
No 213
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=55.39 E-value=72 Score=35.18 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=43.6
Q ss_pred c-EEEecCCCCCCcceEEeCCHHHHHHHH---HHhHhhC----CCCeEEEeeccCCCeEEEEEEEecCCCCccceeEecc
Q 004630 39 K-VVVKPTRAGSSIGVTVAYGVIDSLKKA---KGIILEG----IDDRVVVELFLEGGSEFTAIVLDVGSGFDCHPVVLLP 110 (741)
Q Consensus 39 P-~VvKP~~~~~S~GV~~v~~~~e~~~~~---~~~~~~~----~~~~vlVEe~i~G~~E~sv~vl~~~~~~~~~~~~~~~ 110 (741)
| +|||...|..|.||..|++.+|+...- +.-+... .-+.|||||=+. |...+. +.-..|++...
T Consensus 258 PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~-----T~E~~~---~avAEPVVYmi 329 (403)
T TIGR02049 258 PYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY-----TFEMFN---EAVAEPVVYMI 329 (403)
T ss_pred CeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc-----eeeeeC---CcccCceEEEE
Confidence 5 999999999999999999999975422 2222111 125799998775 333332 23356777555
Q ss_pred eEEE
Q 004630 111 TEVE 114 (741)
Q Consensus 111 ~ei~ 114 (741)
+...
T Consensus 330 d~~v 333 (403)
T TIGR02049 330 GRTV 333 (403)
T ss_pred CCEE
Confidence 5443
No 214
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=55.14 E-value=22 Score=38.57 Aligned_cols=61 Identities=18% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCccEEEecCCCCCCcceEEeCCHHHHHHHHHHhHhhC-CCCeEEEeeccCCCeEEEEEEEe
Q 004630 36 NSGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGIILEG-IDDRVVVELFLEGGSEFTAIVLD 96 (741)
Q Consensus 36 ~~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~~~~~-~~~~vlVEe~i~G~~E~sv~vl~ 96 (741)
..+|+=+||..+.++.|..++.+.+++..++..+-... ....+++|+-+..-.-|||.-+.
T Consensus 135 ~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~~~~T~SVGqv~ 196 (355)
T PF11379_consen 135 RDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELARHGLVLEEDLEEVVTYSVGQVR 196 (355)
T ss_pred ccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccCCCceeeEEEEE
Confidence 46799999999999999999999999755544321111 13478999999754567877664
No 215
>PRK02264 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Provisional
Probab=47.99 E-value=38 Score=36.41 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=54.8
Q ss_pred cEEEEeecCCCCCCCCChHHHHHHHcCCCHHH----------------HHHHHHHHHHhhCCCCCCCCCccccCCCCC--
Q 004630 203 TILFTDINLISGMEQTSFLFQQASKVGFSHSN----------------ILRTIIGHACSRFPNLASYNSVSSHLPGRS-- 264 (741)
Q Consensus 203 ~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~----------------ll~~ii~~a~~r~~~~~~~~~~~~~~~~~~-- 264 (741)
.+.++|....|. ....-.+|+++|++.++ +..+.++.|++|-..+- |-+.+-.
T Consensus 134 avl~lE~~~lP~---~~v~e~vA~~cgv~p~~v~~lvapT~SlaGsvqi~aRvvE~a~hKl~elg------fd~~~I~~~ 204 (317)
T PRK02264 134 AVLVLESDKLPP---EEVAEKVAEECGVDPENVYLLVAPTASLAGSVQVSARVVEVALHKLHELG------FDLTKIVSA 204 (317)
T ss_pred EEEEEecCCCCC---HHHHHHHHHHcCCCHHHEEEEEecCCcceeEEEeehhHHHHHHHHHHHcC------CCHHHheec
Confidence 377899987775 44556778889998876 55778888888854331 1111111
Q ss_pred --CC--CCCccccccccCceEEEEEecCCc
Q 004630 265 --SG--SKPTEALNKREGIREVFVIFGGDT 290 (741)
Q Consensus 265 --~~--~~~~~~~~~~~~k~~V~vlfGG~S 290 (741)
.+ .++..++..+|++++=+|||||+-
T Consensus 205 ~G~aPiaP~~~d~~~aMGrTNDaiiYgG~v 234 (317)
T PRK02264 205 AGSAPIAPVAPDDLKAMGRTNDAILYGGRV 234 (317)
T ss_pred eeccCCCCCCCchhhhhccccceEEECcEE
Confidence 11 345677888999999999999964
No 216
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=47.37 E-value=13 Score=33.75 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=27.8
Q ss_pred cCccEEEEccCCCCCCchHHHHHHHHcCCCccCCCHHH
Q 004630 421 ENQATVFIAVHGGIGEDGTLQSLLEAEGVPYTGPGVMA 458 (741)
Q Consensus 421 ~~~Dvvf~~lhG~~GEdg~iq~lLE~~giPyvG~~~~a 458 (741)
+..|.+||- .|..-|+-.+...++..||.++|+++.+
T Consensus 73 ~g~~~i~pG-yg~lse~~~fa~~~~~~gi~fiGp~~~~ 109 (110)
T PF00289_consen 73 EGADAIHPG-YGFLSENAEFAEACEDAGIIFIGPSPEA 109 (110)
T ss_dssp TTESEEEST-SSTTTTHHHHHHHHHHTT-EESSS-HHH
T ss_pred hcCcccccc-cchhHHHHHHHHHHHHCCCEEECcChHh
Confidence 456776655 3556699999999999999999998765
No 217
>cd00545 MCH Methenyltetrahydromethanopterin (methenyl-H4MPT) cyclohydrolase (MCH). MCH is a cytoplasmic enzyme that has been identified in methanogenic archaea, sulfate- reducing archaea, and methylotrophic bacteria. It catalyzes the reversible formation of N(5), N(10)-methenyltetrahydromethanopterin (methenyl-H4MPT+) from N(5)-formyltetrahydromethanopterin (formyl- H4MPT), in the third step of the reaction to reduce CO2 to CH4. The protein functions as a homodimer or homotrimer, depending on the organism.
Probab=47.02 E-value=29 Score=37.12 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=54.5
Q ss_pred cEEEEeecCCCCCCCCChHHHHHHHcCCCHHH----------------HHHHHHHHHHhhCCCCCCCCCccccCCCCCCC
Q 004630 203 TILFTDINLISGMEQTSFLFQQASKVGFSHSN----------------ILRTIIGHACSRFPNLASYNSVSSHLPGRSSG 266 (741)
Q Consensus 203 ~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~----------------ll~~ii~~a~~r~~~~~~~~~~~~~~~~~~~~ 266 (741)
.+.++|....|. ....-.+|+.+|++.++ +..+.++.|++|...+- +.+..-+.....+
T Consensus 133 avl~lE~~~lP~---~~v~~~vA~~cgv~p~~l~~lvapT~SlaGsvqi~aRvvE~a~hKl~elg--fd~~~I~~~~G~a 207 (312)
T cd00545 133 AVLVLESDKLPP---EEVAEKVAAECGVDPENVTLIVAPTASLAGSVQIVARVVEVALHKAHELG--FDLNKVKDGAGSA 207 (312)
T ss_pred EEEEEecCCCCC---HHHHHHHHHHcCCCHHHEEEEEecCCcceeEEEeehhHHHHHHHHHHHcC--CCHHHheeccccc
Confidence 377899987775 44556778889998876 45677888888844331 1110001111111
Q ss_pred --CCCccccccccCceEEEEEecCCc
Q 004630 267 --SKPTEALNKREGIREVFVIFGGDT 290 (741)
Q Consensus 267 --~~~~~~~~~~~~k~~V~vlfGG~S 290 (741)
.++.+++...|++++=+|||||+-
T Consensus 208 PiaPv~~d~~~aMGrTNDaiiYgG~v 233 (312)
T cd00545 208 PIAPPAPDDLQAMGRTNDAILYGGRV 233 (312)
T ss_pred CCCCCCCcHhhhhccccceeeeCCEE
Confidence 345677889999999999999974
No 218
>TIGR03120 one_C_mch methenyltetrahydromethanopterin cyclohydrolase. Members of this protein family are the enzyme methenyltetrahydromethanopterin cyclohydrolase, a key enzyme for tetrahydromethanopterin (H4MPT)-linked C1 transfer metabolism.
Probab=45.71 E-value=31 Score=36.96 Aligned_cols=83 Identities=12% Similarity=0.225 Sum_probs=54.6
Q ss_pred cEEEEeecCCCCCCCCChHHHHHHHcCCCHHH----------------HHHHHHHHHHhhCCCCCCCCCccccCCCCCCC
Q 004630 203 TILFTDINLISGMEQTSFLFQQASKVGFSHSN----------------ILRTIIGHACSRFPNLASYNSVSSHLPGRSSG 266 (741)
Q Consensus 203 ~~~vlEiN~~Pgl~~~s~~~~~~~~~G~~~~~----------------ll~~ii~~a~~r~~~~~~~~~~~~~~~~~~~~ 266 (741)
.+.++|....|. ....-.+|+.+|++.++ +..+.++.|++|...+- +.+..-+.....+
T Consensus 133 avl~lE~~~lP~---~~v~~~vA~~cgv~p~~l~~lvapT~SlaGsvqi~aRvvE~a~hKl~elg--fd~~~I~~~~G~a 207 (312)
T TIGR03120 133 AVIVLESDKLPD---EEVAEYIADECGVDPENLTLLVAPTASLVGSIQISARVVETALHKLEELG--FDVTKIVSAAGTA 207 (312)
T ss_pred EEEEEecCCCCC---HHHHHHHHHHcCCCHHHEEEEEecCCcceeEEEeehhHHHHHHHHHHHcC--CCHHHheeceecc
Confidence 377899987775 44566778889998876 45677888888843331 0010000111111
Q ss_pred --CCCccccccccCceEEEEEecCCc
Q 004630 267 --SKPTEALNKREGIREVFVIFGGDT 290 (741)
Q Consensus 267 --~~~~~~~~~~~~k~~V~vlfGG~S 290 (741)
.++.+++...|++++=+|||||+-
T Consensus 208 PiaP~~~d~~~aMGrTNDaiiYgG~v 233 (312)
T TIGR03120 208 PIPPVKPDFIQAMGRTNDAILYGGRV 233 (312)
T ss_pred CCCCCCCcHhhhhccccceeeeCCEE
Confidence 345678889999999999999974
No 219
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=43.80 E-value=26 Score=38.16 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCCCCC-----------CcceEEeCCHHHHHHHHHHh
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTRAGS-----------SIGVTVAYGVIDSLKKAKGI 69 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~~~~-----------S~GV~~v~~~~e~~~~~~~~ 69 (741)
|.+.|+.+|+.+...+.+ +..+.+++++- --+|||.-...+ -.||.+|.+++|+.+.+.++
T Consensus 34 l~~~Gv~vp~g~vA~spe----EA~~~akklg~----kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va~qm 105 (434)
T KOG2799|consen 34 LRKYGINVPLGYVAKSPE----EAFAIAKKLGS----KDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVASQM 105 (434)
T ss_pred HHHcCCCCCCCcccCCHH----HHHHHHHHhCC----cceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHHHHh
Confidence 467899999999998887 66667766653 139999853222 26789999999877666665
Q ss_pred H
Q 004630 70 I 70 (741)
Q Consensus 70 ~ 70 (741)
+
T Consensus 106 i 106 (434)
T KOG2799|consen 106 I 106 (434)
T ss_pred h
Confidence 4
No 220
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=40.58 E-value=1.4e+02 Score=29.69 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHc------CCcceeEEEEEEEcCCCcEEEEecCC-CCCCCC
Q 004630 657 MSTEALDKCKQRIELIANAL------QLEGFSRIDAFVNVDNGEVLIIEVNT-VPGMTP 708 (741)
Q Consensus 657 l~~e~~~~i~~~a~~~~~aL------g~~G~~rvDf~v~~~~g~~~viEINt-~Pg~t~ 708 (741)
+-+.++.++-+++.+..++. |+-|...++..+++ +.++++.|+.+ ++|-|.
T Consensus 90 lRESLL~~vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~-dle~vvfevS~RI~gGTN 147 (188)
T PF06973_consen 90 LRESLLPKVFEMGERFVEASKELVPPGMIGPFCLQSIVTD-DLEFVVFEVSARIVGGTN 147 (188)
T ss_dssp E-GGGHHHHHHHHHHHHHHHHHHSTT---EEEEEEEEE-T-TSSEEEEEEESSB-GGGG
T ss_pred hhHhhHHHHHHHHHHHHHHHHHhcCCCccccceEEEEEcC-CceEEEEEEeccccCCCC
Confidence 34556667777666655443 67799999999995 79999999987 355443
No 221
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=38.00 E-value=1.6e+02 Score=32.68 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=35.5
Q ss_pred EEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 514 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 514 vvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
||||..+|.-+.||..|++.+|+.. +.+..+. -++...+..+ -..+||||-|...
T Consensus 260 ViVKADaGTYGMGImtv~~~~ev~~----LNrK~Rn----KM~~~Keg~~-----V~~VIiQEGV~T~ 314 (403)
T TIGR02049 260 VIVKADAGTYGMGIMTATSGEEVLG----LNRKERN----KMAKVKEGLE-----VSEVIIQEGVYTF 314 (403)
T ss_pred EEEEcCCCCCCceEEEecCHHHHHH----hhhhhhh----hcccccCCCc-----cceEEEecCccee
Confidence 6789999999999999999999874 3222211 0111111111 3789999988764
No 222
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=34.30 E-value=44 Score=36.93 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=28.7
Q ss_pred c-EEEecCCCCCCcceEEeCCHHHH---HHHHHHhHhhCC----CCeEEEeeccC
Q 004630 39 K-VVVKPTRAGSSIGVTVAYGVIDS---LKKAKGIILEGI----DDRVVVELFLE 85 (741)
Q Consensus 39 P-~VvKP~~~~~S~GV~~v~~~~e~---~~~~~~~~~~~~----~~~vlVEe~i~ 85 (741)
| +|||...|..|.||..|+|.+|+ -++.+.-+.... -+.+||||=+.
T Consensus 261 PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~ 315 (404)
T PF08886_consen 261 PFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVY 315 (404)
T ss_dssp --EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE---
T ss_pred ceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcc
Confidence 5 99999999999999999999985 334443333211 25899998775
No 223
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.36 E-value=34 Score=39.45 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=36.5
Q ss_pred CccEEEecCCCCCCcceEEeCCHHHHHHHHHHh---HhhCCCCeEEEeeccC
Q 004630 37 SGKVVVKPTRAGSSIGVTVAYGVIDSLKKAKGI---ILEGIDDRVVVELFLE 85 (741)
Q Consensus 37 ~~P~VvKP~~~~~S~GV~~v~~~~e~~~~~~~~---~~~~~~~~vlVEe~i~ 85 (741)
....|+||...+-++||.++++.+++.+..... .....+..++|+.||+
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~ 250 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYID 250 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeecc
Confidence 447999999999999999999999965544210 1123456788999885
No 224
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=32.04 E-value=1.5e+02 Score=31.13 Aligned_cols=90 Identities=22% Similarity=0.165 Sum_probs=53.8
Q ss_pred CccCCCCCCCeEEEecCccchhhhhhhhhhcCCCCCCccEEEecCC--CCCCcc---------eEEeCCHHHHHHHHHHh
Q 004630 1 MSKQGFITVPSFLLQGSEVNESELSNWFVTNKLDPNSGKVVVKPTR--AGSSIG---------VTVAYGVIDSLKKAKGI 69 (741)
Q Consensus 1 l~~~GIp~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~VvKP~~--~~~S~G---------V~~v~~~~e~~~~~~~~ 69 (741)
|+++|+.+-.|+..++.. +..+.+.+++- . -+|+|.-. ||.++| |++-.+.+.++..+.++
T Consensus 31 l~k~Gv~vQ~F~Va~n~k----ea~E~~k~f~~--~--EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~qM 102 (412)
T KOG1447|consen 31 LSKNGVRVQRFFVADNAK----EALEAAKRFNA--K--EYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQM 102 (412)
T ss_pred HHhcCeeEEEEEEecCcH----HHHHHHHhcCC--c--ceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHHH
Confidence 467899998888777654 33333333332 1 27899854 444554 45667888887777776
Q ss_pred HhhCC------C-----CeEEEeeccCCCeEEEEEEEecC
Q 004630 70 ILEGI------D-----DRVVVELFLEGGSEFTAIVLDVG 98 (741)
Q Consensus 70 ~~~~~------~-----~~vlVEe~i~G~~E~sv~vl~~~ 98 (741)
+..+. . ..++|-|-++=.||--..++-+.
T Consensus 103 IG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDR 142 (412)
T KOG1447|consen 103 IGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 142 (412)
T ss_pred HhhhhhhccCCccceeeeeEEEeeccccchheeeeeeecc
Confidence 53211 1 25677776654477666666553
No 225
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=29.59 E-value=39 Score=31.32 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=30.1
Q ss_pred ccCCCCCCchHHHHHHHHcCCCccCCCHHHHHHhhChHHHHHHHHHHHHcCCCccCeE
Q 004630 429 AVHGGIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKD 486 (741)
Q Consensus 429 ~lhG~~GEdg~iq~lLE~~giPyvG~~~~asal~~DK~~tk~~~~~l~~~GIp~p~~~ 486 (741)
+=||.+-+--.+..+-..+-+|+.|+-.. ...-.|...-+++ |+++|||.|+.+
T Consensus 70 VPhgSfv~Y~G~d~ie~~~~vP~FGNR~l-LrwEseR~~~~~l---L~~AgI~~P~~~ 123 (124)
T PF06849_consen 70 VPHGSFVAYVGYDRIENEFKVPIFGNRNL-LRWESERDKERNL---LEKAGIPMPRKF 123 (124)
T ss_dssp --BTTHHHHH-HHHHHHT-SS-EES-CCG-GHCCCSHHHHHHH---HHHTT-BB--BE
T ss_pred ecCCCeeEeecHHHHhhcCCCCeecChHH-HHhhhhhhhHHHH---HHHcCCCCCccC
Confidence 44676554444444445599999998643 4455566666666 999999999754
No 226
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=28.63 E-value=6.6e+02 Score=29.51 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCC
Q 004630 659 TEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTV 703 (741)
Q Consensus 659 ~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~ 703 (741)
+++.+++.+++.++-+.+| ..--|+|-+. +|++|++..=+.
T Consensus 257 p~~~~eL~~~a~~LE~~fg--~pqDIEfai~--~g~L~iLQaRp~ 297 (530)
T PRK05878 257 PAVYDELMAAARTLERLGR--DVQDIEFTVE--SGKLWLLQTRSA 297 (530)
T ss_pred HHHHHHHHHHHHHHHHHcC--CceeEEEEEE--CCEEEEEEeecc
Confidence 5677888888888887777 3678999885 699999988654
No 227
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=28.43 E-value=1.3e+02 Score=33.36 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=28.7
Q ss_pred EEEecCCCCCCcceEEeCCccchHHHHHHHHHHHhcCCCCCcccccccccCCCCCCCeEEEeecccCc
Q 004630 514 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETD 581 (741)
Q Consensus 514 vvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~ 581 (741)
+|||...|.-+.||..|++.+|+..+-+.-+..+... .+..+ -..+||||-|...
T Consensus 263 V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~--------Keg~~-----v~~VIIQEGV~T~ 317 (404)
T PF08886_consen 263 VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVI--------KEGLE-----VSEVIIQEGVYTF 317 (404)
T ss_dssp EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-S--------SSSS--------EEEEEE-----
T ss_pred EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhh--------cCCCc-----cceeEEecCcchh
Confidence 6788888888999999999999864322222222221 11111 3789999998764
No 228
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=27.28 E-value=1.7e+02 Score=32.92 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCC-CCCCCCCchHHHH
Q 004630 657 MSTEALDKCKQRIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNT-VPGMTPSTVLIHQ 715 (741)
Q Consensus 657 l~~e~~~~i~~~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt-~Pg~t~~S~l~~~ 715 (741)
+|++..+.|++ -.+.=...=++|.||.++. +|.+.++|.|. .|..---|.+.|.
T Consensus 88 IP~~~~~~i~~----Sw~~~~~slyGRfDfa~dg-~g~~KllE~NADTPT~L~Ea~~~Qw 142 (397)
T PHA02117 88 IPENARQMIKR----SWTEDEWGLYGRFDLIMTP-NGGPKMLEYNADTPTILIESAISQW 142 (397)
T ss_pred CCHHHHHHHHh----hhccCCCcEEEEEEEEEcC-CCCeEEEEecCCCCchHHHHHHHHH
Confidence 35555544433 2332233457999999984 57899999997 4443333334443
No 229
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=24.63 E-value=90 Score=34.23 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=46.8
Q ss_pred HHhhChHHHHHHHHHHHHcCCCccCeEEEeCccccCCchhhHHHHHHhhcCCCcEEEecCCCCC-----------CcceE
Q 004630 460 KTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVKPARDGC-----------STGVA 528 (741)
Q Consensus 460 al~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~e~~~~~~~~~~~~~~~~lg~~PvvVKP~~~gs-----------S~GV~ 528 (741)
.+...-+...++ |++.|+.+|+.+...+.| ...++.++|++.-+|||.-.-.+ -.||.
T Consensus 22 ~L~~hey~~~~l---l~~~Gv~vp~g~vA~spe--------EA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~ 90 (434)
T KOG2799|consen 22 SLGIHEYRSAAL---LRKYGINVPLGYVAKSPE--------EAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVK 90 (434)
T ss_pred hhhHHHHHHHHH---HHHcCCCCCCCcccCCHH--------HHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceE
Confidence 344455555666 899999999998876654 23456678876779999864322 35788
Q ss_pred EeCCccchH
Q 004630 529 RLCCAEDLT 537 (741)
Q Consensus 529 ~v~~~~eL~ 537 (741)
+|.+.+|..
T Consensus 91 iVf~p~Eak 99 (434)
T KOG2799|consen 91 IVFSPQEAK 99 (434)
T ss_pred EEeChHHHH
Confidence 999877765
No 230
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=23.91 E-value=29 Score=31.45 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCCCCCCCCccccccccCceEEEEEecCCccceeeeeccH
Q 004630 261 PGRSSGSKPTEALNKREGIREVFVIFGGDTSERQVSLMSG 300 (741)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~k~~V~vlfGG~S~E~~vSl~sa 300 (741)
+.|+++++|..+|.|+.|+....-+-+|....-|..+.+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~~~~G 40 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSGVYEG 40 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEccCcCC
Confidence 3689999999999999999888888777654444444444
No 231
>PRK05849 hypothetical protein; Provisional
Probab=23.65 E-value=1.5e+03 Score=28.11 Aligned_cols=174 Identities=16% Similarity=0.109 Sum_probs=88.4
Q ss_pred CCCCCCCeEEEecCccch--hhhhhhhhhcCCCCCCccEEEecCCCC------CCcceE--E--eC--CHHHHHHHHHHh
Q 004630 4 QGFITVPSFLLQGSEVNE--SELSNWFVTNKLDPNSGKVVVKPTRAG------SSIGVT--V--AY--GVIDSLKKAKGI 69 (741)
Q Consensus 4 ~GIp~p~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~P~VvKP~~~~------~S~GV~--~--v~--~~~e~~~~~~~~ 69 (741)
.|.++|+.+++...+|.. +.+.+.+... + ...|++|.....+ |..|.+ + +. +.+++..++...
T Consensus 23 ~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~-~--~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V 99 (783)
T PRK05849 23 KKAKILPLLLFSVREWLSNKDKVLEEIQNS-F--PADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKV 99 (783)
T ss_pred cCCCCCCeEEeCHHhhccCHHHHHHHHHHh-c--CCCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHH
Confidence 688999999998765532 2222222110 0 2348999976422 235552 2 22 233676666665
Q ss_pred Hhh---CCCCeEEEeeccCCCeEEE-EEEEecCCCCccceeEecceEEEEeccCccccccCCcceecccCCCCCCCe-EE
Q 004630 70 ILE---GIDDRVVVELFLEGGSEFT-AIVLDVGSGFDCHPVVLLPTEVELQFQGSVDVREKDAIFNYRRKYLPTQQV-AY 144 (741)
Q Consensus 70 ~~~---~~~~~vlVEe~i~G~~E~s-v~vl~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~ 144 (741)
+.. ..+..|+||+.+.+ ...+ |..-.+........+ .+...... +..+-+-. -.+.... ..
T Consensus 100 ~aS~~~~~~~aVlVQ~MV~~-~~~SGV~FTrdP~tg~~~~~----iey~~~G~-------ge~VVsG~--~t~~~~~~~~ 165 (783)
T PRK05849 100 IASYGTSKDDEILVQPMLED-IVLSGVAMSRDPESGAPYYV----INYDESGS-------TDSVTSGS--GGSATTVYHY 165 (783)
T ss_pred HHhhCCCCCCeEEEEeCccC-CCceEEEEECCCCCCCCceE----EEEcCCCC-------Ccceeccc--CCCCceeeec
Confidence 532 12357999999963 2222 222211111100001 11100000 11111100 0000000 00
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCCCcEEEEeecCCCC
Q 004630 145 HTPPRFPIVVINSIREGASLLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEWGTILFTDINLISG 214 (741)
Q Consensus 145 ~~P~~~~~~~~~~i~~~a~~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~G~~~vlEiN~~Pg 214 (741)
.-+..++++...++.+++.++=+.+|. ++..|+|-+ |.+|++|++-. ||+
T Consensus 166 ~~~~~l~p~~~~~L~~la~~LE~~fg~-dpqDIEfai-----------------d~~g~L~lLQ~--RPi 215 (783)
T PRK05849 166 RDALVFKPPRLKKLIELIRELEALFGC-DFLDIEFAI-----------------DEKEELYILQV--RPI 215 (783)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCC-CCeeeEEEE-----------------ccCCEEEEEEc--cCC
Confidence 012346788888999999998887774 478899876 56899999999 554
No 232
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=22.35 E-value=2.5e+02 Score=30.91 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCcceeEEEEEEEcCCCcEEEEecCCCCCCCCCc
Q 004630 668 RIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPST 710 (741)
Q Consensus 668 ~a~~~~~aLg~~G~~rvDf~v~~~~g~~~viEINt~Pg~t~~S 710 (741)
..+.-+++=...=|.|.||.++. +|.+.++|.|. =||+|
T Consensus 86 ~i~~SW~~~~~sLygRfDl~~dg-~g~iKLlEyNA---DTPTs 124 (387)
T COG0754 86 VIRNSWRRRDPSLYGRFDLAYDG-DGPIKLLEYNA---DTPTS 124 (387)
T ss_pred HHHHHHhccCcceeeeeEEEecC-CCCeEEEEecC---CCchH
Confidence 33334555455558999999996 79999999996 45555
No 233
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=21.09 E-value=2.4e+02 Score=30.45 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH-HHHHHhCCCCeeEeeeeecCCCCccccccccccCcCCC-CcEEEEeecCCCCCC
Q 004630 152 IVVINSIREGAS-LLFQRLGLCDFARIDGWFLPSSTHVFSSSETKYGSTEW-GTILFTDINLISGME 216 (741)
Q Consensus 152 ~~~~~~i~~~a~-~~~~aLg~~g~~~iD~~~~~~~~~~~~~~~~~~r~~~~-G~~~vlEiN~~Pgl~ 216 (741)
.++.+.|.+... .+...+...++. +|+.+ +.+ ++++++|+||-..-+
T Consensus 194 ~~I~~~I~~F~~~~I~~~~~~~~~v-~DVyi-----------------~~~~~~v~LID~NPf~~~T 242 (299)
T PF07065_consen 194 EEIRSKIQEFFEEHIKPKFPLDNYV-FDVYI-----------------TRDKDKVWLIDFNPFGPRT 242 (299)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEE-EEEEE-----------------cCCCCeEEEEEecCCcccC
Confidence 344455555442 344556555554 89887 344 789999999966533
Done!