Query 004630
Match_columns 741
No_of_seqs 369 out of 3861
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 21:59:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/004630.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_122-125//hhsearch_pdb/004630hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fu0_A D-alanine--D-alanine li 1.0 1 1 502.7 28.8 350 277-739 1-350 (357)
2 3tqt_A D-alanine--D-alanine li 1.0 1 1 487.4 33.4 352 277-740 2-355 (372)
3 3lwb_A D-alanine--D-alanine li 1.0 1 1 479.8 31.7 355 276-740 7-369 (373)
4 3k3p_A D-alanine--D-alanine li 1.0 1 1 475.4 32.9 342 274-740 32-375 (383)
5 3e5n_A D-alanine-D-alanine lig 1.0 1 1 472.6 29.5 355 275-740 18-373 (386)
6 3i12_A D-alanine-D-alanine lig 1.0 1 1 465.1 34.2 353 277-740 1-354 (364)
7 3se7_A VANA; alpha-beta struct 1.0 1 1 449.3 30.6 339 278-740 2-344 (346)
8 1ehi_A LMDDL2, D-alanine:D-lac 1.0 1 1 427.6 33.0 347 277-740 1-355 (377)
9 2fb9_A D-alanine:D-alanine lig 1.0 1 1 416.3 30.4 322 277-738 1-322 (322)
10 4eg0_A D-alanine--D-alanine li 1.0 1 1 410.8 29.2 305 277-738 11-316 (317)
No 1
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=502.71 Aligned_cols=350 Identities=25% Similarity=0.342 Sum_probs=274.5
Q ss_pred CCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58528999825876641566010999999620299713999999358876679888988999876621124531002444
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
|+|+||+|||||.|+||+|||.||++|+++|+ +.+|+|++|+|+++|.|+...... +.+..+.|....
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~-~~gy~v~~i~i~~~g~~~~~~~~~----~~~~~~~~~~~~------- 68 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENIN-TNKFDIIPIGITRSGEWYHYTGEK----EKILNNTWFEDS------- 68 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSC-TTTEEEEEEEECTTCCEEEECSCT----HHHHTTCGGGCG-------
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH-HHCCEEEEEEEECCCCEEECCCCH----HHHHCCCCHHHH-------
T ss_conf 99988999979786655999999999999873-719989999980788565258987----774068311021-------
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 48899754421587423220001101243432101237554443346667532023799987305862999915899998
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
. ...+. .+.......++. .... . ......+|+|||++||.+||
T Consensus 69 -----~----~~~~~------------------~~~~~~~~~~~~--~~~~------~--~~~~~~~D~vf~~l~G~~gE 111 (357)
T 4fu0_A 69 -----K----NLCPV------------------VVSQNRSVKGFL--EIAS------D--KYRIIKVDLVFPVLHGKNGE 111 (357)
T ss_dssp -----G----GEEEE------------------EECCCTTTCEEE--EC------------CEEEECSEEEECCCSHHHH
T ss_pred -----H----CCCCC------------------CCCCCCCCCCHH--HHHH------H--HHHHCCCCEEEECCCCCCCC
T ss_conf -----0----35641------------------102222212034--4445------4--67653798999988686644
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 51899999974998239997788986182789999999999599856958981754357831558999971149873899
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~PlvV 516 (741)
||++|++||.+||||+||++.++++||||..||++ |+++|||+|++..+...+. ...+.++.+++ +||+||
T Consensus 112 dg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~-----~~~~~~~~~~l-g~PvvV 182 (357)
T 4fu0_A 112 DGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKL---VSLAGISVPKSVTFKRFNE-----EAAMKEIEANL-TYPLFI 182 (357)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCBCCCEEEEEGGGH-----HHHHHHHHHHC-CSSEEE
T ss_pred CHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEECCCCH-----HHHHHHHHHHC-CCCEEE
T ss_conf 98999999987996899399999988699989999---9987979898775347884-----99999999863-997899
Q ss_pred ECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCHHH
Q ss_conf 55999988566872871016899999999875099997644566645899999807992034585001113455521012
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 596 (741)
||+++|||+||++|++.++|.. ++..++.+ ++.+++|+||+|+
T Consensus 183 KP~~gg~s~Gv~~v~~~~el~~---~~~~a~~~-------------------~~~vlvE~~i~G~--------------- 225 (357)
T 4fu0_A 183 KPVRAGSSFGITKVIEKQELDA---AIELAFEH-------------------DTEVIVEETINGF--------------- 225 (357)
T ss_dssp EETTCSSSTTCEEESSHHHHHH---HHHHHTTT-------------------CSEEEEEECCCSE---------------
T ss_pred EECCCCCCCCEEEECCHHHHHH---HHHHHHCC-------------------CCEEEEEEECCCE---------------
T ss_conf 9798888984288565776999---99987506-------------------9818999833878---------------
Q ss_pred HHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 21037980169999997579971001764999037962013222348983277199999999999999999999999992
Q 004630 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 597 ~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~~~ky~~g~~~~~~P~~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
|++|+|+++...... +..+......+|+|++||..+.+...+|++ +++++.++++++|.+++++|
T Consensus 226 ----------e~~v~vl~~~~~~~~--~v~~~~~~~~~~d~~~k~~~~~~~~~~pa~---l~~~~~~~i~~~A~~~~~aL 290 (357)
T 4fu0_A 226 ----------EVGCAVLGIDELIVG--RVDEIELSSGFFDYTEKYTLKSSKIYMPAR---IDAEAEKRIQEAAVTIYKAL 290 (357)
T ss_dssp ----------EEEEEEEESSSEEEC--CCEEEEECHHHHTSCSBCSSCCEEEESSCS---CCHHHHHHHHHHHHHHHHHT
T ss_pred ----------EEEEEEEECCCCEEE--EEEEEECCCCCCCCCCCCCCCCCEEECCCC---CCHHHHHHHHHHHHHHHHHH
T ss_conf ----------999999956984287--778897046533432210488834742899---99999999999999999993
Q ss_pred CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 996245879999747994999930899999988537999875199999899999999998720
Q 004630 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSER 739 (741)
Q Consensus 677 g~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r 739 (741)
||+|++|||||+++ +|++|||||||+||||++|++|+++.++| +...+|+++||++||+|
T Consensus 291 g~~G~~~VDf~~~~-dg~~~vlEvNt~PG~t~~S~~p~~~~~~G--~~~~~li~~li~~aler 350 (357)
T 4fu0_A 291 GCSGFSRVDMFYTP-SGEIVFNEVNTIPGFTSHSRYPNMMKGIG--LSFSQMLDKLIGLYVEL 350 (357)
T ss_dssp TCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTTT--CCHHHHHHHHHHTTC--
T ss_pred CCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHCC
T ss_conf 99336999999968-99899999709899885468999999969--49999999999998562
No 2
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=1.00 E-value=1 Score=487.40 Aligned_cols=352 Identities=21% Similarity=0.284 Sum_probs=272.8
Q ss_pred CCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58528999825876641566010999999620299713999999358876679888988999876621124531002444
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
++|+||+|||||.|+||+|||.||++|+.+|+ +++|+|++|+|+++|.|+..... ...|..
T Consensus 2 ~~~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~-~~~~~v~~i~i~~~~~~~~~~~~---------~~~~~~--------- 62 (372)
T 3tqt_A 2 AEKLHISVLCGGQSTEHEISIQSAKNIVNTLD-AAKYLISVIFIDHVGRWYLIDQP---------EMFLAH--------- 62 (372)
T ss_dssp CCSEEEEEEEECSSTTHHHHHHHHHHHHHHSC-TTTEEEEEEEECTTSCEEEECCH---------HHHHHS---------
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCEEECCCH---------HHHHCC---------
T ss_conf 98878999964688751868998999999870-63966999978799987844650---------221103---------
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 48899754421587423220001101243432101237554443346667532023799987305862999915899998
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
.+. . +.+.... ..+ .+........+. . +.. ......+|+|||++||++||
T Consensus 63 ~~~-~----~~~~~~~--------~~~------~l~~~~~~~~~~--~-------~~~--~~~~~~~D~vf~~lhG~~gE 112 (372)
T 3tqt_A 63 SPD-H----LVKEGSA--------RPI------TIAFGDAAKPWQ--S-------LNG--DGRRYSADCVFPMVHGTQGE 112 (372)
T ss_dssp CHH-H----HHHHTCS--------EEE------EECTTCSSCCEE--E-------C------CEECCSEEEECCCSTTTT
T ss_pred CCC-C----CCCCCCC--------CCE------EECCCCCCCCEE--E-------CCC--CCCCCCCCEEEECCCCCCCC
T ss_conf 544-4----4323345--------532------432455654200--0-------344--45566777899908999874
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCC-EE
Q ss_conf 51899999974998239997788986182789999999999599856958981754357831558999971149873-89
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT-LC 515 (741)
Q Consensus 437 dG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~P-lv 515 (741)
||++|++||.+||||+||++.++++||||..||++ |+++|||+|++..+...++. ...+..+...+ +|| +|
T Consensus 113 dg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~----~~~~~~~~~~l-g~P~vv 184 (372)
T 3tqt_A 113 DGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTV---LRAGGIPVVDWHTLSPRDAT----EGVYQRLLDRW-GTSELF 184 (372)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCCBCCCEEECTTSCC----TTHHHHHHHHC----CEE
T ss_pred CHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEECHHHH----HHHHHHHHHHC-CCCEEE
T ss_conf 78999999985998119689999998699999999---99779698988999660444----46899999755-998399
Q ss_pred EECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCHH
Q ss_conf 95599998856687287101689999999987509999764456664589999980799203458500111345552101
Q 004630 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNAD 595 (741)
Q Consensus 516 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~ 595 (741)
|||+++|||+||++|++.++|.. ++..++.+ +..++||+||+|+
T Consensus 185 VKP~~ggss~Gv~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~-------------- 228 (372)
T 3tqt_A 185 VKAVSLGSSVATLPVKTETEFTK---AVKEVFRY-------------------DDRLMVEPRIRGR-------------- 228 (372)
T ss_dssp EEESSCCSGGGEEEECSHHHHHH---HHHHHTTT-------------------CSCEEEEECCCSE--------------
T ss_pred EEECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCCEEEECCCCCE--------------
T ss_conf 98899999879799799999999---99999853-------------------9979998898877--------------
Q ss_pred HHHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCCC-CEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22103798016999999757997100176499903796201322234898-32771999999999999999999999999
Q 004630 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIAN 674 (741)
Q Consensus 596 ~~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~~~ky~~g~-~~~~~P~~~~~l~~e~~~~i~~~a~~~~~ 674 (741)
|++|+|+++.. ..+ .+..++....+||||++||..+. +...+|++ +++++.++++++|.++++
T Consensus 229 -----------E~~v~vl~~~~-~~~-~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~ 292 (372)
T 3tqt_A 229 -----------EIECAVLGNGA-PKA-SLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD---LSESVTKQIQQIAIDAFK 292 (372)
T ss_dssp -----------EEEEEEEESSS-CEE-CCCEEEECC---------------CEEESCCC---CCHHHHHHHHHHHHHHHH
T ss_pred -----------EEEEEEEECCC-CEE-EEEEEEECCCCCCCHHHCCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_conf -----------99999995898-158-44589953888526210226998459994799---999999999999999999
Q ss_pred HCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 929962458799997479949999308999999885379998751999998999999999987202
Q 004630 675 ALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 675 aLg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r~ 740 (741)
+|||+|++|||||++. +|++|++||||+||||++|.+|+++.++| +...+|+++||++|++|+
T Consensus 293 aLg~~G~~rvDf~~~~-dg~~~vlEINt~PG~t~~S~~p~~~~~~G--~~~~~li~~li~~a~~r~ 355 (372)
T 3tqt_A 293 MVHCSGMARVDFFVTP-NNKVLVNEINTIPGFTNISMYPKMWEASG--LPCPNLLDQLIELAIDRH 355 (372)
T ss_dssp HTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 8299517999999958-99689999879889696678999999849--899999999999999875
No 3
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=479.85 Aligned_cols=355 Identities=24% Similarity=0.299 Sum_probs=270.9
Q ss_pred CCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35852899982587664156601099999962029971399999935887667988898899987662112453100244
Q 004630 276 REGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRH 355 (741)
Q Consensus 276 ~~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 355 (741)
.+.|+||+|||||+|+||+|||.||.+|+++|+ +++|+|++|+|+++|.|+....+ ...|.....
T Consensus 7 ~~~~~~v~vl~GG~S~E~~vS~~sa~~v~~~l~-~~~~~v~~i~i~~~g~w~~~~~~---------~~~~~~~~~----- 71 (373)
T 3lwb_A 7 RDRRVRVAVVFGGRSNEHAISCVSAGSILRNLD-SRRFDVIAVGITPAGSWVLTDAN---------PDALTITNR----- 71 (373)
T ss_dssp CTTCEEEEEEEEC-----CHHHHHHHHHHHHSC-TTTEEEEEEEECTTCCEEEECCC-----------------------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCEEECCCH---------HHHHHCCCC-----
T ss_conf 767857999966798870417998999999864-43765999986288876744750---------544320245-----
Q ss_pred CHHHHHHH-HHH-CCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 44889975-442-1587423220001101243432101237554443346667532023799987305862999915899
Q 004630 356 TTEEVLAA-CIE-AIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGG 433 (741)
Q Consensus 356 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~ 433 (741)
..+.+... ... .+.+. . ...+... ...+. . .. ....+|+|||++||.
T Consensus 72 ~~~~~~~~~~~~~~~~~~-----------------~--~~~~~~~---~~~~~--~---~~----~~~~~D~vfp~lhG~ 120 (373)
T 3lwb_A 72 ELPQVKSGSGTELALPAD-----------------P--RRGGQLV---SLPPG--A---GE----VLESVDVVFPVLHGP 120 (373)
T ss_dssp --------------------------------------------C---CCCTT--H---HH----HHHTCSEEEECCEET
T ss_pred CCCCCCCCCCCCEEEECC-----------------C--CCCCEEE---CCCCC--C---CC----CCCCCCEEEECCCCC
T ss_conf 454433356652475036-----------------6--6564021---04564--4---34----467766899878999
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99851899999974998239997788986182789999999999599856958981754357831558999971149873
Q 004630 434 IGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKT 513 (741)
Q Consensus 434 ~GEdG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~P 513 (741)
+||||++|++||.+||||+||++.++++||||..||++ |+++|||+|++..+...++... ......+ +||
T Consensus 121 ~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~~~------~~~~~~l-g~P 190 (373)
T 3lwb_A 121 YGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKL---LAADGLPVGAYAVLRPPRSTLH------RQECERL-GLP 190 (373)
T ss_dssp TEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHH---HHHTTCCBCCEEEECTTCCCCC------HHHHHHH-CSC
T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHH---HHHCCCCCCCEEEEECCCCCHH------HHHHHHC-CCC
T ss_conf 98658999999984998208759999997399999999---9975959899899978421013------7999746-998
Q ss_pred EEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCC
Q ss_conf 89955999988566872871016899999999875099997644566645899999807992034585001113455521
Q 004630 514 LCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKN 593 (741)
Q Consensus 514 lvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~ 593 (741)
+||||+++|||+||++|++.++|.. +++.++.+ +..+|||+||+|+
T Consensus 191 vvVKP~~ggss~GV~~v~~~~eL~~---a~~~a~~~-------------------~~~vlVEe~I~G~------------ 236 (373)
T 3lwb_A 191 VFVKPARGGSSIGVSRVSSWDQLPA---AVARARRH-------------------DPKVIVEAAISGR------------ 236 (373)
T ss_dssp EEEEESBCSTTTTCEEECSGGGHHH---HHHHHHTT-------------------CSSEEEEECCEEE------------
T ss_pred EEEEECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCCEEEECCCCCE------------
T ss_conf 8998489999879799699999999---99999843-------------------9989996797880------------
Q ss_pred HHHHHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCC--CC----CCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHH
Q ss_conf 01221037980169999997579971001764999037--96----2013222348983277199999999999999999
Q 004630 594 ADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKES--GD----ILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQ 667 (741)
Q Consensus 594 ~~~~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~--~~----~~d~~~ky~~g~~~~~~P~~~~~l~~e~~~~i~~ 667 (741)
|++|+++++.+......+..++... .+ ||+|++||..+.+..++|++ +++++.+++++
T Consensus 237 -------------E~~v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~---l~~~~~~~i~~ 300 (373)
T 3lwb_A 237 -------------ELECGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAK---VDDQVAEAIRQ 300 (373)
T ss_dssp -------------EEEEEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCC---CCHHHHHHHHH
T ss_pred -------------EEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCEEEECCC---CCHHHHHHHHH
T ss_conf -------------89999997898864886206897267777655523665514689801882799---99999999999
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999929962458799997479949999308999999885379998751999998999999999987202
Q 004630 668 RIELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 668 ~a~~~~~aLg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r~ 740 (741)
+|.+++++|||+|++|+|||++. +|. |||||||+||||++|.+|+++.+++ +...+|+++||++|++|+
T Consensus 301 ~a~~~~~aLg~~G~~~vDf~~~~-dg~-~vlEIN~~PG~t~~S~~p~~~~a~G--i~~~~li~~li~~a~~r~ 369 (373)
T 3lwb_A 301 LAIRAFAAIDCRGLARVDFFLTD-DGP-VINEINTMPGFTTISMYPRMWAASG--VDYPTLLATMIETTLARG 369 (373)
T ss_dssp HHHHHHHHTTCCSEEEEEEEEET-TEE-EEEEEESSCCCSTTSHHHHHHHHTT--CCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCCEEEEEEEEEC-CCC-EEEEECCCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 99999999699308998899978-998-8998659999886569999999849--899999999999998664
No 4
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=475.41 Aligned_cols=342 Identities=23% Similarity=0.341 Sum_probs=274.0
Q ss_pred CCCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 22358528999825876641566010999999620299713999999358876679888988999876-62112453100
Q 004630 274 NKREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSS-RVVWSLPYSLV 352 (741)
Q Consensus 274 ~~~~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~ 352 (741)
+..|+|+||+|||||.|+||+|||.||++|+++|+ ..+|+|++|+|+++|.|+...... +.+. ...|..
T Consensus 32 ~~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~-~~~~~v~~i~i~~~g~~~~~~~~~----~~~~~~~~~~~----- 101 (383)
T 3k3p_A 32 RGSMSKETLVLLYGGRSAERDVSVLSAESVMRAIN-YDNFLVKTYFITQAGDFIKTQEFD----SQPSETDKLMT----- 101 (383)
T ss_dssp -----CEEEEEEEECSSTTHHHHHHHHHHHHHHSC-TTTEEEEEEEECTTSCEEEEEEES----SCCC--CCCCC-----
T ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCEEECCCCC----CCCCCCCCCCC-----
T ss_conf 24256876999947798861377999999999764-528889999856988877446520----00011111123-----
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCC
Q ss_conf 24444889975442158742322000110124343210123755444334666753202379998730586299991589
Q 004630 353 LRHTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHG 432 (741)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG 432 (741)
.... . ..+.. .+ ..+ .+.+|+|||++||
T Consensus 102 ---------------~~~~--------~--------~~~~~------------~~-----~~~----~~~~D~vf~~lhG 129 (383)
T 3k3p_A 102 ---------------NDTI--------I--------ASQKI------------KP-----SDI----YEEEAVVFPVLHG 129 (383)
T ss_dssp ---------------TTSC--------C--------GGGEE------------CG-----GGG----CCTTCEEEEECCS
T ss_pred ---------------CCCC--------C--------CCCCC------------CC-----CCC----CCCCCEEEECCCC
T ss_conf ---------------3321--------1--------12344------------62-----234----5678899984799
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99985189999997499823999778898618278999999999959-98569589817543578315589999711498
Q 004630 433 GIGEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLG-VLTINKDVRRKEDLLKTPIVDIWHELTSKLQC 511 (741)
Q Consensus 433 ~~GEdG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~G-Ip~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~ 511 (741)
++||||++|++||.+||||+||++.++++||||..+|++ |+++| ||+|++..+...+. .++.+.++...+ +
T Consensus 130 ~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~G~Ipvp~~~~~~~~~~----~~~~~~~~~~~l-g 201 (383)
T 3k3p_A 130 PMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQV---LESATTIPQVAYVALIEGEP----LESKLAEVEEKL-I 201 (383)
T ss_dssp TTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHHCCCCBCCEEEEETTSC----HHHHHHHHHHHC-C
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCCEEEEECCCC----HHHHHHHHHHHC-C
T ss_conf 986468999999985998038889999997499999999---99688959999899957541----368999999854-9
Q ss_pred CCEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCC
Q ss_conf 73899559999885668728710168999999998750999976445666458999998079920345850011134555
Q 004630 512 KTLCVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTN 591 (741)
Q Consensus 512 ~PlvVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~ 591 (741)
||+||||++++||+||++|++.++|.. +++.++.+ +..++||+||+|+
T Consensus 202 ~PvvVKP~~ggss~GV~~v~~~~el~~---al~~a~~~-------------------~~~vlVEe~I~G~---------- 249 (383)
T 3k3p_A 202 YPVFVKPANMGSSVGISKAENRTDLKQ---AIALALKY-------------------DSRVLIEQGVDAR---------- 249 (383)
T ss_dssp SSEEEEECC------CEEESSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE----------
T ss_pred CCEEEEECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCEEEEECCCCCE----------
T ss_conf 988999699998879799899999999---99999847-------------------9969998488974----------
Q ss_pred CCHHHHHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 21012210379801699999975799710017649990379620132223489832771999999999999999999999
Q 004630 592 KNADRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIEL 671 (741)
Q Consensus 592 ~~~~~~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~~~ky~~g~~~~~~P~~~~~l~~e~~~~i~~~a~~ 671 (741)
|++|+++++. ....++ ..++....+||||++||..+.+...+|++ +++++.++++++|.+
T Consensus 250 ---------------E~~v~vl~d~-~~~~~~-~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~---l~~~~~~~i~~~a~~ 309 (383)
T 3k3p_A 250 ---------------EIEVGILGNT-DVKTTL-PGEIVKDVAFYDYEAKYIDNKITMAIPAE---IDPVIVEKMRDYAAT 309 (383)
T ss_dssp ---------------EEEEEEEESS-SCEECC-CEEEC-----------------CEESSCC---CCHHHHHHHHHHHHH
T ss_pred ---------------EEEEEEEECC-CEEEEE-EEEEECCCCCCCHHHCCCCCCEEEEECCC---CCHHHHHHHHHHHHH
T ss_conf ---------------9999999589-715986-69993178753665504589826995699---999999999999999
Q ss_pred HHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999929962458799997479949999308999999885379998751999998999999999987202
Q 004630 672 IANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 672 ~~~aLg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r~ 740 (741)
++++|||+|++|+||+++. +|++||+||||+||||++|.+|+++.+++ +...+|+++||+.|++|+
T Consensus 310 ~~~aLg~~G~~~vDf~~~~-~g~~~vlEINtrPG~t~~S~~p~~~~a~G--i~~~~li~~li~~a~~r~ 375 (383)
T 3k3p_A 310 AFRTLGCCGLSRCDFFLTE-DGKVYLNELNTMPGFTQWSMYPLLWENMG--LSYSVLIEELVSLAKEMF 375 (383)
T ss_dssp HHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCCC--CHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 9998499049999999988-99789998668999882119999999829--899999999999999887
No 5
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=1.00 E-value=1 Score=472.57 Aligned_cols=355 Identities=24% Similarity=0.285 Sum_probs=272.1
Q ss_pred CCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23585289998258766415660109999996202997139999993588766798889889998766211245310024
Q 004630 275 KREGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLR 354 (741)
Q Consensus 275 ~~~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 354 (741)
..|+|+||+|||||.|+||+|||.||++|+++|+ +.+|+|++|+|+++|.|+.....+ ..+...+
T Consensus 18 ~~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~-~~~~~v~~i~i~~~~~~~~~~~~~---------~~~~~~~----- 82 (386)
T 3e5n_A 18 GHMRKIRVGLIFGGKSAEHEVSLQSARNILDALD-PQRFEPVLIGIDKQGQWHVNDPDS---------FLLHADD----- 82 (386)
T ss_dssp ---CCEEEEEEEECSSTTHHHHHHHHHHHHHHSC-TTTEEEEEEEECTTSCEEEECGGG---------SEESTTC-----
T ss_pred HHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCEEECCCCH---------HHCCCCC-----
T ss_conf 5157765999936588871248999999999757-538889999977989888446501---------1001234-----
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 44488997544215874232200011012434321012375544433466675320237999873058629999158999
Q 004630 355 HTTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGI 434 (741)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~ 434 (741)
.. ........ ..+. +........+.. .. .......+|+|||++||.+
T Consensus 83 -~~-------~~~~~~~~--------~~~~------~~~~~~~~~~~~-~~----------~~~~~~~~D~vf~~lhG~~ 129 (386)
T 3e5n_A 83 -PA-------RIALHRSG--------RGVA------LLPGAQQQQLRP-IQ----------PEQALAQIDVVFPIVHGTL 129 (386)
T ss_dssp -TT-------TCEECCCC--------CCEE------ECTTCSSSCEEE-CC------------CCCCCCSEEEEEECSHH
T ss_pred -CC-------CCCCCCCC--------CCEE------ECCCCCCCCEEC-CC----------CCCCCCCCCEEEECCCCCC
T ss_conf -32-------11223456--------5223------125765532001-33----------3332478888998589999
Q ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 98518999999749982399977889861827899999999995998569589817543578315589999711498738
Q 004630 435 GEDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTL 514 (741)
Q Consensus 435 GEdG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~Pl 514 (741)
||||++|++||.+||||+||++.++++||||..+|++ |+++|||+|++..+...++.. ..+.++.+.+ +||+
T Consensus 130 gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~---l~~~GIp~p~~~~~~~~~~~~----~~~~~~~~~l-g~Pv 201 (386)
T 3e5n_A 130 GEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRV---LRDARLAVAPFVCFDRHTAAH----ADVDTLIAQL-GLPL 201 (386)
T ss_dssp HHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHH---HHHTTCCBCCEEEEEHHHHTT----CCHHHHHHHH-CSSE
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEECCCCCH----HHHHHHHHHC-CCCE
T ss_conf 7578999999985999538789999998699999999---998797979889996754343----5699999855-9978
Q ss_pred EEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCH
Q ss_conf 99559999885668728710168999999998750999976445666458999998079920345850011134555210
Q 004630 515 CVKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNA 594 (741)
Q Consensus 515 vVKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~ 594 (741)
||||+++|||+||++|++.++|.. ++..++.+ +..++||+||+|+
T Consensus 202 vVKP~~ggss~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~I~G~------------- 246 (386)
T 3e5n_A 202 FVKPANQGSSVGVSQVRTADAFAA---ALALALAY-------------------DHKVLVEAAVAGR------------- 246 (386)
T ss_dssp EEEESBSCSSTTCEEECSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCSE-------------
T ss_pred EEEECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCCEEEECCCCCE-------------
T ss_conf 999799996879799799999999---99999727-------------------9919997699981-------------
Q ss_pred HHHHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCCC-CEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 122103798016999999757997100176499903796201322234898-3277199999999999999999999999
Q 004630 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIA 673 (741)
Q Consensus 595 ~~~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~~~ky~~g~-~~~~~P~~~~~l~~e~~~~i~~~a~~~~ 673 (741)
|++|+++++.+.... +..++....+||+|++||..+. +..++|++ ++++..+++++++.+++
T Consensus 247 ------------E~~v~vl~~~~~~~~--~~gei~~~~~~~d~~~ky~~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~ 309 (386)
T 3e5n_A 247 ------------EIECAVLGNAVPHAS--VCGEVVVHDAFYSYATKYISEHGAEIVIPAD---IDAQTQQRIQQIAVQAY 309 (386)
T ss_dssp ------------EEEEEEECSSSCEEE--EEEEECC-----------------CEESSCS---SCHHHHHHHHHHHHHHH
T ss_pred ------------EEEEEEEECCCCEEE--EEEEEEECCCCCCHHCCCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHH
T ss_conf ------------899999968994398--7689975786116010367899748997799---99999999999999999
Q ss_pred HHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9929962458799997479949999308999999885379998751999998999999999987202
Q 004630 674 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 674 ~aLg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r~ 740 (741)
++|||+|++|+||+++. +|++|++||||+||||++|++|+++.+++ +...+|+++||++|++|+
T Consensus 310 ~aLg~~G~~~vDf~~~~-dg~~~vlEiN~~PG~t~~S~~p~~~~~~G--i~~~~li~~li~~a~~r~ 373 (386)
T 3e5n_A 310 QALGCAGMARVDVFLCA-DGRIVINEVNTLPGFTRISVYPKLWQASG--LDYRGLITRLIELALERH 373 (386)
T ss_dssp HHHTCCSEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTTT--CCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 99599507988899977-99589997479999885579999999839--899999999999999876
No 6
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=1.00 E-value=1 Score=465.11 Aligned_cols=353 Identities=22% Similarity=0.302 Sum_probs=271.7
Q ss_pred CCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58528999825876641566010999999620299713999999358876679888988999876621124531002444
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
|+|+||+|||||.|+||+|||.||++|+++|+ +.+|+|++|+|++++.|......+ ..+... .
T Consensus 1 m~~~~v~vl~GG~S~E~evSl~S~~~v~~al~-~~~~~v~~i~i~~~~~~~~~~~~~---------~~~~~~-------~ 63 (364)
T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAID-KTRFDVVLLGIDKAGQWHVNDAEN---------YLQNAD-------D 63 (364)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSC-TTTEEEEEEEECTTSCEEEECSSS---------SBSSTT-------C
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH-HCCCEEEEEEECCCCCEEECCCCH---------HHHCCC-------C
T ss_conf 99658999965688873043987999999885-649869999987999887546510---------000135-------5
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 48899754421587423220001101243432101237554443346667532023799987305862999915899998
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
... ....... .. + .+........+.... .. .....+|+|||++||.+||
T Consensus 64 ~~~------~~~~~~~-------~~-~------~~~~~~~~~~~~~~~--~~---------~~~~~~D~vf~~lhG~~gE 112 (364)
T 3i12_A 64 PAH------IALRPSA-------IS-L------AQVPGKHQHQLINAQ--NG---------QPLPTVDVIFPIVHGTLGE 112 (364)
T ss_dssp TTT------CCBCCCS-------CB-E------EECTTCSSSCEEETT--TC---------CBCCCCSEEEECCCSTTTT
T ss_pred CCC------CCCCCCC-------CC-C------EECCCCCCCCEECCC--CC---------CCCCCCCEEEEECCCCCCC
T ss_conf 321------0002345-------43-0------104665543100034--44---------4357888999948999975
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 51899999974998239997788986182789999999999599856958981754357831558999971149873899
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~PlvV 516 (741)
||++|++||.+||||+||++.++++||||..+|++ |+++|||+|++..+...++.. ..+.++.+++ +||+||
T Consensus 113 dg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~~----~~~~~~~~~l-g~PvvV 184 (364)
T 3i12_A 113 DGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRL---LRDAGLNIAPFITLTRTNRHA----FSFAEVESRL-GLPLFV 184 (364)
T ss_dssp SSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCBCCEEEEETTTGGG----CCHHHHHHHH-CSSEEE
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEECCCCCH----HHHHHHHHHC-CCCEEE
T ss_conf 77999999985989249789999999799999999---997797989989997632222----4599999852-998899
Q ss_pred ECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCHHH
Q ss_conf 55999988566872871016899999999875099997644566645899999807992034585001113455521012
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 596 (741)
||+++|||+||+++++.+++.. ++..++.+ +..++||+||+|+
T Consensus 185 KP~~ggss~Gv~~v~~~~el~~---a~~~a~~~-------------------~~~vlVEe~I~G~--------------- 227 (364)
T 3i12_A 185 KPANQGSSVGVSKVANEAQYQQ---AVALAFEF-------------------DHKVVVEQGIKGR--------------- 227 (364)
T ss_dssp EETTCCTTTTCEEESSHHHHHH---HHHHHHHH-------------------CSEEEEEECCCSE---------------
T ss_pred EECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCCEEEECCCCCE---------------
T ss_conf 8789998849599699999999---99999846-------------------9919997686886---------------
Q ss_pred HHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCCC-CEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2103798016999999757997100176499903796201322234898-327719999999999999999999999999
Q 004630 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGT-GINLTPPPASIMSTEALDKCKQRIELIANA 675 (741)
Q Consensus 597 ~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~~~ky~~g~-~~~~~P~~~~~l~~e~~~~i~~~a~~~~~a 675 (741)
|++|+++++.+... .+..++.+..++|+|++||..+. +..++|++ ++++..+++++++.+++++
T Consensus 228 ----------E~~v~vl~~~~~~~--~~~~ei~~~~~~~~~~~ky~~~~~~~~~~Pa~---l~~~~~~~i~~~a~~~~~a 292 (364)
T 3i12_A 228 ----------EIECAVLGNDNPQA--STCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQ---IPSEVNDKIRAIAIQAYQT 292 (364)
T ss_dssp ----------EEEEEEEESSSCEE--EEEEEEECCTTCC--TTTTSGGGGCEEESSCS---SCHHHHHHHHHHHHHHHHH
T ss_pred ----------EEEEEEEECCCCEE--EEEEEEECCCCCCCHHHCCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_conf ----------99999992898558--65489952887538777056899648993799---9999999999999999998
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 29962458799997479949999308999999885379998751999998999999999987202
Q 004630 676 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 676 Lg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r~ 740 (741)
||++|++|+||+++. +|++|++||||+||||++|.+|+++.+++ +...+|+.+||+.|++|+
T Consensus 293 lg~~G~~~vD~~~~~-~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G--~~~~~l~~~li~~a~~~~ 354 (364)
T 3i12_A 293 LGCAGMARVDVFLTA-DNEVVINEINTLPGFTNISMYPKLWQASG--LGYTDLISRLIELALERH 354 (364)
T ss_dssp TTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCHHHHHHHTTT--CCHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 399508999899936-99789997538999887788999999969--699999999999999877
No 7
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=1.00 E-value=1 Score=449.26 Aligned_cols=339 Identities=25% Similarity=0.318 Sum_probs=270.6
Q ss_pred CCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 85289998258766415660109999996202997139999993588766798889889998766211245310024444
Q 004630 278 GIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHTT 357 (741)
Q Consensus 278 ~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 357 (741)
+|+||+|||||.|+||+|||.||++|+++|+ +.+|+|++|++++++.|+...... +....+.|. +
T Consensus 2 ~~~~v~vl~GG~s~e~~vSl~sa~~v~~al~-~~g~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~-~--------- 66 (346)
T 3se7_A 2 SHMKIGIIFGGVSEEHDISVKSAREVATHLG-TGVFEPFYLGITKSGAWQLCDGPG----ENWEDGNCR-P--------- 66 (346)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSC-TTTEEEEEEEECTTSCEEEESCSS----SSSSSSCCE-E---------
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCEEECCCHH----HHHCCCCCC-C---------
T ss_conf 9878999961668886377999999999756-559889999987999888566425----432035555-3---------
Q ss_pred HHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCC
Q ss_conf 88997544215874232200011012434321012375544433466675320237999873058629999158999985
Q 004630 358 EEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGED 437 (741)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GEd 437 (741)
..+.+.. ....+.... ... ..++.+|+|||++||.+|||
T Consensus 67 --------~~~~~~~-----------------------~~~~~~~~~--~~~--------~~~~~~D~v~~~lhG~~ged 105 (346)
T 3se7_A 67 --------AVLSPDR-----------------------SVHGLLVLE--QGK--------YETIRLDLVLPVLHGKLGED 105 (346)
T ss_dssp --------EEECCCT-----------------------TTCEEEEEE--TTE--------EEEEECSEEEECCCSTTTTS
T ss_pred --------CEECCCC-----------------------CCCCCEECC--CCC--------CCCCCCCEEEECCCCCCCCC
T ss_conf --------2004676-----------------------676411025--431--------11367888999357999887
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 18999999749982399977889861827899999999995998569589817543578315589999711498738995
Q 004630 438 GTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCVK 517 (741)
Q Consensus 438 G~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~PlvVK 517 (741)
|++|++||.+|+||+||++.++++||||..+|++ |+++|||+|++..+...+. .....+ +||+|||
T Consensus 106 g~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~----------~~~~~l-g~PvvvK 171 (346)
T 3se7_A 106 GAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLV---ARSAGIATPNFWTVTADEK----------IPTDQL-TYPVFVK 171 (346)
T ss_dssp SHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHH---HHHTTCBCCCEEEEETTSC----------CCTTTC-CSSEEEE
T ss_pred HHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEECCCHH----------HHHHHC-CCCEEEE
T ss_conf 6999999986998429699999998299999999---9986959599899837078----------788755-9989998
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCHHHH
Q ss_conf 59999885668728710168999999998750999976445666458999998079920345850011134555210122
Q 004630 518 PARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADRL 597 (741)
Q Consensus 518 P~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~~ 597 (741)
|++++||+||+++++.+++.. ++..++.+ +..++||+||+|+
T Consensus 172 P~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~---------------- 213 (346)
T 3se7_A 172 PARSGSSFGVSKVAREEDLQG---AVEAAREY-------------------DSKVLIEEAVIGT---------------- 213 (346)
T ss_dssp ESSCCTTTTCEEECSHHHHHH---HHHHHTTT-------------------CSEEEEEECCCSE----------------
T ss_pred ECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCCEEEEECCCCE----------------
T ss_conf 689998768899799999999---99999838-------------------9909999073888----------------
Q ss_pred HHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCC----CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1037980169999997579971001764999037962013----222348983277199999999999999999999999
Q 004630 598 MWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSL----EEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIA 673 (741)
Q Consensus 598 ~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~----~~ky~~g~~~~~~P~~~~~l~~e~~~~i~~~a~~~~ 673 (741)
|++|.++++++... ..+..++....+||+| ++||..+.+...+|++ ++++..+++++++.+++
T Consensus 214 ---------E~~v~vl~~~~~~~-~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~---l~~~~~~~i~~~a~~~~ 280 (346)
T 3se7_A 214 ---------EIGCAVMGNGPELI-TGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD---ISTTSRSLVQDTAKAVY 280 (346)
T ss_dssp ---------EEEEEEEEETTEEE-ECCCEEECCC--------------CGGGSCEESSCC---CCHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEEEECCCCEE-EEEEEEEECCCCCCCCCCCHHCCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHH
T ss_conf ---------99999995699749-974499962888757655211054689803996899---99999999999999999
Q ss_pred HHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9929962458799997479949999308999999885379998751999998999999999987202
Q 004630 674 NALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 674 ~aLg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r~ 740 (741)
++||++|++|+||+++. +|++|++||||+||||++|.+++++.+++ +...+++.+||+.|++|+
T Consensus 281 ~~lg~~G~~~vD~~~~~-~g~~~vlEiN~rPG~t~~s~~p~~~~~~G--~~~~~l~~~li~~a~~~~ 344 (346)
T 3se7_A 281 RALGCRGLSRVDLFLTE-DGKVVLNEVNTFPGMTSYSRYPRMMTAAG--LSRADVIDRLVSLALAGK 344 (346)
T ss_dssp HHHTCCEEEEEEEEECT-TSCEEEEEEESSCCCSTTCHHHHHHHHTT--CCHHHHHHHHHHHHHC--
T ss_pred HHHCCCEEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 99699518999999927-99789999748999886359999999819--999999999999998865
No 8
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=1.00 E-value=1 Score=427.56 Aligned_cols=347 Identities=24% Similarity=0.295 Sum_probs=265.1
Q ss_pred CCCEEEEEEECCCCCCEEEEECCHHHHHHHH-HCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5852899982587664156601099999962-029971399999935887667988898899987662112453100244
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNL-QAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRH 355 (741)
Q Consensus 277 ~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l-~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 355 (741)
|+|+||+|||||.|+||+||+.||++|+++| ++ .+|+|++|++++.+.|+.. .+....... .
T Consensus 1 m~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~-~g~~v~~i~~~~~~~~~~~--------------~~~~~~~~~--~ 63 (377)
T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEAT-GKYEIIVFAIAQNGFFLDT--------------ESSKKILAL--E 63 (377)
T ss_dssp --CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHH-SSEEEEEEEECTTSCBCCH--------------HHHHHHHTT--C
T ss_pred CCCCEEEEEECCCCCCCCEEHHHHHHHHHHHCCC-CCCEEEEEEECCCCCEEEC--------------CCCCCCCCC--C
T ss_conf 9976799996988888655499999999972740-1827999998699988843--------------421232233--3
Q ss_pred CHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 44889975442158742322000110124343210123755444334666753202379998730586299991589999
Q 004630 356 TTEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIG 435 (741)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~G 435 (741)
+...+........ ...... .+.. +.. ..+.+|+|||.+||.+|
T Consensus 64 ~~~~~~~~~~~~~-----------------------~~~~~~--------~~~~-----~~~-~~~~~D~v~~~~~g~~g 106 (377)
T 1ehi_A 64 DEQPIVDAFMKTV-----------------------DASDPL--------ARIH-----ALK-SAGDFDIFFPVVHGNLG 106 (377)
T ss_dssp CHHHHHHHHHTSC-----------------------CTTCTT--------CTTG-----GGG-TTCCCSEEEEECCSTTT
T ss_pred CHHHHCCCCCCCC-----------------------CCCCCC--------CCCH-----HHC-CCCCCCEEEEECCCCCC
T ss_conf 2122113454332-----------------------210124--------7411-----112-35688889990689987
Q ss_pred CCHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 85189999997499823999778898618278999999999959985695898175435783155899997114987389
Q 004630 436 EDGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLC 515 (741)
Q Consensus 436 EdG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~Plv 515 (741)
|||++|++||.+|+||+|+++.++++|+||..||++ |+++|||+|++..+...+.. +..+.++.+.+ +||+|
T Consensus 107 edg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~---l~~~Gip~p~~~~~~~~~~~----~~~~~~~~~~~-g~Pvv 178 (377)
T 1ehi_A 107 EDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKEL---LTVNGIRNTKYIVVDPESAN----NWSWDKIVAEL-GNIVF 178 (377)
T ss_dssp SSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHH---HHTTTCCCCCEEEECTTGGG----GCCHHHHHHHH-CSCEE
T ss_pred CCHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHH---HHHCCCCCCCEEEEECCCCC----HHHHHHHHHHC-CCCEE
T ss_conf 678999999986999759599999897399999999---99869898887999665542----47899998753-99889
Q ss_pred EECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCHHHCCCCCCCCH
Q ss_conf 95599998856687287101689999999987509999764456664589999980799203458-50011134555210
Q 004630 516 VKPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVET-DEILFSSQSTNKNA 594 (741)
Q Consensus 516 VKP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G-~~~~v~~~~~~~~~ 594 (741)
|||++++||+||++|++.++|.. ++..++.+ +..++||+||+| +
T Consensus 179 VKP~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~~------------- 223 (377)
T 1ehi_A 179 VKAANQGSSVGISRVTNAEEYTE---ALSDSFQY-------------------DYKVLIEEAVNGAR------------- 223 (377)
T ss_dssp EEESSCCTTTTEEEECSHHHHHH---HHHHHTTT-------------------CSCEEEEECCCCSC-------------
T ss_pred EEECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCCEEEECCCCCCC-------------
T ss_conf 99589999859799699999999---99999825-------------------99499981899981-------------
Q ss_pred HHHHHCCCCCEEEEEEEEECCCCCCEECCCEEEECC-----CCCCCCCCCCCCCC-CCEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 122103798016999999757997100176499903-----79620132223489-832771999999999999999999
Q 004630 595 DRLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKE-----SGDILSLEEKFQGG-TGINLTPPPASIMSTEALDKCKQR 668 (741)
Q Consensus 595 ~~~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~-----~~~~~d~~~ky~~g-~~~~~~P~~~~~l~~e~~~~i~~~ 668 (741)
|++|.++++.+. . +.+..++.. ..+||+|+.||..+ .+..++|++ ++++..++++++
T Consensus 224 ------------E~~v~vl~~~~~-~-~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~---l~~~~~~~i~~~ 286 (377)
T 1ehi_A 224 ------------ELEVGVIGNDQP-L-VSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ---LSPEVTKEVKQM 286 (377)
T ss_dssp ------------EEEEEEEESSSC-E-EEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCC---CCHHHHHHHHHH
T ss_pred ------------EEEEEEECCCCC-E-EEEEEEEEECCCCCCCCEECHHHCCCCCCCEEEEECCC---CCHHHHHHHHHH
T ss_conf ------------599999908983-7-97427997147777686257776146899715882799---999999999999
Q ss_pred HHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999929962458799997479949999308999999885379998751999998999999999987202
Q 004630 669 IELIANALQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSERF 740 (741)
Q Consensus 669 a~~~~~aLg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~r~ 740 (741)
+.+++++||++|++||||+++. +|++||+||||+||||++|.+|+++.+.+ +...+++.++|+.|++|+
T Consensus 287 a~~~~~alg~~G~~~vD~~~~~-~g~~~vlEiN~rpg~t~~s~~p~~~~a~G--~~~~~l~~~li~~al~r~ 355 (377)
T 1ehi_A 287 ALDAYKVLNLRGEARMDFLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSD--INNAKLVDMLIDYGFEDF 355 (377)
T ss_dssp HHHHHHHTTCCEEEEEEEEECT-TCCEEEEEEESSCCCSTTCGGGTGGGGGT--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_conf 9999997299767999999957-99889998768999885228999999949--899999999999998642
No 9
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=1.00 E-value=1 Score=416.30 Aligned_cols=322 Identities=28% Similarity=0.406 Sum_probs=255.2
Q ss_pred CCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58528999825876641566010999999620299713999999358876679888988999876621124531002444
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
|+|+||+|||||.|+||+|||.||++|+++|++ +|++|+|++++.|... .
T Consensus 1 m~~~~v~vl~gg~s~E~~vSl~s~~~v~~al~~----~v~~i~~~~~~~~~~~-------------------~------- 50 (322)
T 2fb9_A 1 MEFMRVLLIAGGVSPEHEVSLLSAEGVLRHIPF----PTDLAVIAQDGRWLLG-------------------E------- 50 (322)
T ss_dssp CCCCCEEEEEECSSTTHHHHHHHHHHHHHHCSS----CEEEEEECTTSCEECH-------------------H-------
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC----CEEEEEECCCCCEEEC-------------------C-------
T ss_conf 997689999379954678899999999997455----7099997598887764-------------------6-------
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 48899754421587423220001101243432101237554443346667532023799987305862999915899998
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
.+. +.+.... . . +. .. . .+.. + ..+.+|+|||++||.+||
T Consensus 51 -~~~-----~~~~~~~-~---~------------~~----~~-----~-~~~~------~--~~~~~D~v~~~~hg~~ge 90 (322)
T 2fb9_A 51 -KAL-----TALEAKA-A---P------------EG----EH-----P-FPPP------L--SWERYDVVFPLLHGRFGE 90 (322)
T ss_dssp -HHH-----HHTTSSC-C---C------------CC----CB-----C-SSCC------C--CCTTCSEEEEECCSTTTT
T ss_pred -CCH-----HHHCCCC-C---C------------CE----EC-----C-CCCC------C--CCCCCCEEEEECCCCCCC
T ss_conf -625-----5531356-5---5------------20----01-----3-5332------2--346788999947899875
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 51899999974998239997788986182789999999999599856958981754357831558999971149873899
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~PlvV 516 (741)
||++|++||.+|+||+||++.++++|+||..+|++ |+++|||+|++..+...+. + .. ++ +||+||
T Consensus 91 dg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~------~----~~-~~-g~Pvvv 155 (322)
T 2fb9_A 91 DGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRV---LAQAGVPVVPWVAVRKGEP------P----VV-PF-DPPFFV 155 (322)
T ss_dssp SSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEETTSC------C----CC-CS-CSCEEE
T ss_pred CHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHH---HHHCCCCCCCEEEEECCHH------H----HH-CC-CCCEEE
T ss_conf 68999999986998669599999987499999999---9987989898899977334------6----65-16-998899
Q ss_pred ECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCHHH
Q ss_conf 55999988566872871016899999999875099997644566645899999807992034585001113455521012
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVETDEILFSSQSTNKNADR 596 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~G~~~~v~~~~~~~~~~~ 596 (741)
||++++||+||+++++.++|.. +++.++.+ +..++||+||+|.
T Consensus 156 KP~~g~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~vlvEe~I~G~--------------- 198 (322)
T 2fb9_A 156 KPANTGSSVGISRVERFQDLEA---ALALAFRY-------------------DEKAVVEKALSPV--------------- 198 (322)
T ss_dssp EETTCCTTTTCEEESSHHHHHH---HHHHHTTT-------------------CSEEEEEECCSSC---------------
T ss_pred EECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCEEEEEECCCCC---------------
T ss_conf 8599999879899799999999---99998706-------------------9929998077798---------------
Q ss_pred HHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 21037980169999997579971001764999037962013222348983277199999999999999999999999992
Q 004630 597 LMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANAL 676 (741)
Q Consensus 597 ~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~~~ky~~g~~~~~~P~~~~~l~~e~~~~i~~~a~~~~~aL 676 (741)
+|++|.++++.+.... +..++.....+|+|+.||..+.+..++|++ ++++..++++++|.+++++|
T Consensus 199 ---------~E~~v~vl~~~~~~~~--~~~ei~~~~~~~~~~~k~~~g~~~~~~Pa~---l~~~~~~~i~~~a~~~~~al 264 (322)
T 2fb9_A 199 ---------RELEVGVLGNVFGEAS--PVGEVRYEAPFYDYETKYTPGRAELLIPAP---LDPGTQETVQELALKAYKVL 264 (322)
T ss_dssp ---------EEEEEEEESSSSCEEE--EEEEEEEECCEEETTTEEECCEEEEESSCC---CCTTHHHHHHHHHHHHHHHH
T ss_pred ---------EEEEEEEEECCCCEEE--EEEEEEECCCCCCHHHCCCCCCEEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_conf ---------3699999958985496--569996378832888851699837990799---99899999999999999984
Q ss_pred CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99624587999974799499993089999998853799987519999989999999999872
Q 004630 677 QLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 677 g~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~ 738 (741)
|++|++|+||+++ +|++|++||||+||||++|++|+++.++| +...+++.++|+.|++
T Consensus 265 g~~G~~~vD~~~~--~g~~~vlEiN~rpg~t~~s~~p~~~~~~G--~~~~~l~~~li~~a~~ 322 (322)
T 2fb9_A 265 GVRGMARVDFFLA--EGELYLNELNTIPGFTPTSMYPRLFEAGG--VAYPELLRRLVELALT 322 (322)
T ss_dssp TCCSEEEEEEEEE--TTEEEEEEEESSCCCSSSCHHHHHHHHTT--CCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEEEEE--CCCEEEEEEECCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHC
T ss_conf 9900899999999--99699999879989884009999999839--8999999999999749
No 10
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=1.00 E-value=1 Score=410.78 Aligned_cols=305 Identities=29% Similarity=0.404 Sum_probs=255.3
Q ss_pred CCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58528999825876641566010999999620299713999999358876679888988999876621124531002444
Q 004630 277 EGIREVFVIFGGDTSERQVSLMSGTNVWLNLQAFNDIEVTPCLLASSIDCSSGMDANITDPDSSSRVVWSLPYSLVLRHT 356 (741)
Q Consensus 277 ~~k~~v~vlfGG~S~E~~vSl~Sa~~v~~~l~~~~~y~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 356 (741)
..|+||+|||||.|+||+||+.||++|+++|++ .+|+|+++. +.+ . |.
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~-~~~-------------------~-~~---------- 58 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFD-PAE-------------------R-PL---------- 58 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEEC-TTT-------------------S-CT----------
T ss_pred HHCCEEEEEECCCCCCCEEEHHHHHHHHHHHHH-CCCEEEEEE-CCC-------------------C-HH----------
T ss_conf 316409999789987542549889999999987-799899993-887-------------------4-37----------
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 48899754421587423220001101243432101237554443346667532023799987305862999915899998
Q 004630 357 TEEVLAACIEAIEPDRAAFTSHLRNQVVNDLVEGLKKHSWFTGFDIADELPMRHSINEWIKLAKENQATVFIAVHGGIGE 436 (741)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~~lhG~~GE 436 (741)
.. + ....+|+|||++||.+||
T Consensus 59 -~~--------------------------------------------------------l--~~~~~D~v~~~~hg~~ge 79 (317)
T 4eg0_A 59 -SA--------------------------------------------------------L--KDEGFVRAFNALHGGYGE 79 (317)
T ss_dssp -TH--------------------------------------------------------H--HHTTCCEEEECCCSGGGT
T ss_pred -HH--------------------------------------------------------H--HHCCCCEEEECCCCCCCC
T ss_conf -77--------------------------------------------------------6--413898999937899982
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 51899999974998239997788986182789999999999599856958981754357831558999971149873899
Q 004630 437 DGTLQSLLEAEGVPYTGPGVMASKTCMDKVATSLALNHLADLGVLTINKDVRRKEDLLKTPIVDIWHELTSKLQCKTLCV 516 (741)
Q Consensus 437 dG~iq~llE~~gIpy~G~~~~asai~~DK~~tk~~~~~l~~~GIp~p~~~~v~~~~~~~~~~~~~~~~~~~~l~~~PlvV 516 (741)
||++|++||.+|+||+||++.++++|+||..+|++ |+++|||+|++..+...+. ..+...++...+ +||+||
T Consensus 80 ~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~---l~~~Gip~p~~~~~~~~~~----~~~~~~~~~~~~-g~Pvvv 151 (317)
T 4eg0_A 80 NGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLV---WQQTGVPTPPFETVMRGDD----YAARATDIVAKL-GLPLFV 151 (317)
T ss_dssp SSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHH---HHHTTCCCCCEEEEETTSC----HHHHHHHHHHHH-CSCEEE
T ss_pred HHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHH---HHHCCCCCCCEEEEECCHH----HHHHHHHHHHHC-CCCEEE
T ss_conf 59999999985998009699999998199999999---9987969899899978155----788998888735-998899
Q ss_pred ECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-CCCHHHCCCCCCCCHH
Q ss_conf 559999885668728710168999999998750999976445666458999998079920345-8500111345552101
Q 004630 517 KPARDGCSTGVARLCCAEDLTVYVKALEECLLRIPPNSFSRAHGMIEMPNPPPEILIFEPFVE-TDEILFSSQSTNKNAD 595 (741)
Q Consensus 517 KP~~~gsS~GV~~v~~~~eL~~~~~al~~a~~~~~~~~l~~~~~~~~~p~~~~~~vlVEefI~-G~~~~v~~~~~~~~~~ 595 (741)
||++++||+||+++++.+++.. ++..++.+ +..++||+||+ |+
T Consensus 152 KP~~~~~s~Gv~~v~~~~el~~---a~~~~~~~-------------------~~~~lvEe~i~~G~-------------- 195 (317)
T 4eg0_A 152 KPASEGSSVAVLKVKTADALPA---ALSEAATH-------------------DKIVIVEKSIEGGG-------------- 195 (317)
T ss_dssp EECC-----CCEEECSGGGHHH---HHHHHTTT-------------------CSEEEEEECCCSSE--------------
T ss_pred EECCCCCCCCEEEECCHHHHHH---HHHHHHHC-------------------CCEEEEECCCCCCC--------------
T ss_conf 8399999888799799999999---99999858-------------------99199986888896--------------
Q ss_pred HHHHCCCCCEEEEEEEEECCCCCCEECCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22103798016999999757997100176499903796201322234898327719999999999999999999999999
Q 004630 596 RLMWKGNSRWVEITVGVIGKCGSMHSLMPSVTVKESGDILSLEEKFQGGTGINLTPPPASIMSTEALDKCKQRIELIANA 675 (741)
Q Consensus 596 ~~~~~g~~~~~Eisv~Vl~~~~~~~~~~p~~~~~~~~~~~d~~~ky~~g~~~~~~P~~~~~l~~e~~~~i~~~a~~~~~a 675 (741)
|++|.++++. ..+..++.....|++|+.||..+.+...+|++ ++++..+++++++.+++++
T Consensus 196 -----------E~~v~vl~~~-----~~~~~~i~~~~~~~~~~~k~~~g~~~~~~P~~---l~~~~~~~l~~~a~~~~~~ 256 (317)
T 4eg0_A 196 -----------EYTACIAGDL-----DLPLIKIVPAGEFYDYHAKYVANDTQYLIPCG---LPAEQETELKRIARRAFDV 256 (317)
T ss_dssp -----------EEEEEEETTC-----CCCCEEEEC---------------CEEESSCS---SCHHHHHHHHHHHHHHHHT
T ss_pred -----------EEEEEEECCC-----CCCEEEEEECCCEECHHHCCCCCCEEEECCCC---CCHHHHHHHHHHHHHHHHH
T ss_conf -----------8999999770-----45459996188624655515699855884899---9999999999999999998
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 299624587999974799499993089999998853799987519999989999999999872
Q 004630 676 LQLEGFSRIDAFVNVDNGEVLIIEVNTVPGMTPSTVLIHQALSEQPPMYPHQFFRKVLDLGSE 738 (741)
Q Consensus 676 Lg~~G~~rIDf~v~~~~g~~~viEINt~Pg~t~~S~l~~~a~~a~~~~~p~~l~~~li~~al~ 738 (741)
||++|++|+||+++. +|++|++||||+||||++|.+|+++.+++ +...+|+.+||+.|++
T Consensus 257 lg~~G~~~vD~~~~~-~g~~~vlEiN~~pg~t~~s~~p~~~~~~G--~~~~~l~~~li~~a~~ 316 (317)
T 4eg0_A 257 LGCTDWGRADFMLDA-AGNAYFLEVNTAPGMTDHSLPPKAARSIG--IGYSELVVKVLSLTLN 316 (317)
T ss_dssp TTCCSEEEEEEEECT-TCCEEEEEEESSCCCSTTSHHHHHHHHTT--CCHHHHHHHHHHTTC-
T ss_pred HCCCCEEEEEEEEEC-CCCEEEEEEECCCCCCCCCHHHHHHHHCC--CCHHHHHHHHHHHHHH
T ss_conf 399756978899938-99789998648999885369999999839--9999999999999965
Done!