Query 004631
Match_columns 741
No_of_seqs 174 out of 288
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:32:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2256 Predicted protein invo 100.0 1E-153 2E-158 1279.5 49.4 584 6-597 37-629 (661)
2 PF03715 Noc2: Noc2p family; 100.0 1.6E-99 3E-104 805.7 29.4 297 284-581 1-299 (299)
3 COG5604 Uncharacterized conser 100.0 2.1E-89 4.6E-94 727.5 23.3 432 101-581 88-523 (523)
4 PF04147 Nop14: Nop14-like fam 99.0 1.4E-08 3E-13 122.8 22.7 249 286-572 513-768 (840)
5 KOG2147 Nucleolar protein invo 98.0 0.00055 1.2E-08 80.2 20.6 176 367-551 534-716 (823)
6 PF04147 Nop14: Nop14-like fam 97.2 0.065 1.4E-06 65.9 25.3 169 245-425 537-715 (840)
7 KOG2256 Predicted protein invo 96.7 0.067 1.4E-06 62.8 17.5 36 36-72 86-121 (661)
8 PF03224 V-ATPase_H_N: V-ATPas 89.3 5.4 0.00012 43.4 12.9 186 208-403 53-254 (312)
9 KOG2147 Nucleolar protein invo 87.7 15 0.00033 44.5 15.8 138 151-297 388-562 (823)
10 cd00256 VATPase_H VATPase_H, r 85.4 26 0.00056 40.4 15.9 176 209-405 52-241 (429)
11 PF03378 CAS_CSE1: CAS/CSE pro 82.9 3.2 6.8E-05 47.7 7.3 227 284-531 21-266 (435)
12 KOG2141 Protein involved in hi 82.0 31 0.00067 41.9 14.8 56 290-345 482-541 (822)
13 KOG0212 Uncharacterized conser 77.6 8.1 0.00018 45.5 8.2 167 217-418 381-572 (675)
14 KOG2759 Vacuolar H+-ATPase V1 73.2 20 0.00044 41.0 9.7 156 210-376 65-228 (442)
15 KOG2153 Protein involved in th 70.9 82 0.0018 38.0 14.2 69 209-281 278-354 (704)
16 KOG2002 TPR-containing nuclear 66.3 3.7E+02 0.008 34.3 22.8 115 424-551 677-801 (1018)
17 KOG2141 Protein involved in hi 63.2 62 0.0013 39.5 11.3 111 169-300 296-412 (822)
18 PF01602 Adaptin_N: Adaptin N 62.1 58 0.0013 37.3 10.9 70 223-297 91-160 (526)
19 KOG0526 Nucleosome-binding fac 57.9 5.5 0.00012 46.4 1.7 42 429-470 362-406 (615)
20 PF01602 Adaptin_N: Adaptin N 56.1 1.6E+02 0.0034 33.7 13.2 150 245-427 145-298 (526)
21 PF12755 Vac14_Fab1_bd: Vacuol 55.8 42 0.00091 30.8 6.8 63 245-308 21-83 (97)
22 KOG1248 Uncharacterized conser 53.8 2.2E+02 0.0048 36.8 14.3 175 206-381 178-378 (1176)
23 KOG1999 RNA polymerase II tran 51.9 6.8 0.00015 48.5 1.2 58 212-270 185-244 (1024)
24 KOG1020 Sister chromatid cohes 51.4 7.3E+02 0.016 33.4 18.3 235 239-493 616-884 (1692)
25 KOG1992 Nuclear export recepto 48.4 1.3E+02 0.0028 37.5 10.9 182 238-438 480-686 (960)
26 PF12460 MMS19_C: RNAPII trans 46.5 4.9E+02 0.011 29.6 20.4 269 248-534 91-369 (415)
27 KOG2270 Serine/threonine prote 45.1 11 0.00024 43.1 1.4 17 248-264 200-216 (520)
28 PF07165 DUF1397: Protein of u 44.7 3.6E+02 0.0078 28.2 12.4 175 127-342 8-210 (213)
29 PF13251 DUF4042: Domain of un 44.0 1.1E+02 0.0024 31.3 8.4 80 202-281 93-175 (182)
30 PF04931 DNA_pol_phi: DNA poly 41.6 9.6 0.00021 46.9 0.4 10 127-136 764-773 (784)
31 PF14812 PBP1_TM: Transmembran 40.4 9.3 0.0002 34.2 0.0 11 692-702 49-59 (81)
32 smart00543 MIF4G Middle domain 39.5 3.3E+02 0.0072 26.5 10.9 120 216-342 5-124 (200)
33 PF08167 RIX1: rRNA processing 39.5 1.5E+02 0.0033 29.4 8.4 83 201-285 58-148 (165)
34 PF06524 NOA36: NOA36 protein; 39.4 20 0.00044 38.6 2.3 7 51-57 250-256 (314)
35 PF10446 DUF2457: Protein of u 37.6 9.9 0.00021 43.6 -0.4 59 1-92 32-90 (458)
36 KOG1058 Vesicle coat complex C 36.0 9.9E+02 0.021 30.1 16.2 334 158-545 55-437 (948)
37 PF05477 SURF2: Surfeit locus 34.9 29 0.00063 37.1 2.6 14 464-477 39-52 (244)
38 PF11698 V-ATPase_H_C: V-ATPas 34.3 78 0.0017 30.4 5.1 67 214-280 47-115 (119)
39 PF04826 Arm_2: Armadillo-like 34.2 1.1E+02 0.0024 32.8 6.9 75 205-280 88-163 (254)
40 PTZ00429 beta-adaptin; Provisi 33.9 9.9E+02 0.022 29.8 15.7 58 223-283 268-329 (746)
41 COG5101 CRM1 Importin beta-rel 33.7 2.9E+02 0.0062 33.9 10.4 202 204-417 182-415 (1053)
42 PF10161 DDDD: Putative mitoch 32.2 28 0.00062 31.1 1.7 17 52-72 59-75 (79)
43 PF04931 DNA_pol_phi: DNA poly 31.8 42 0.00092 41.4 3.7 16 204-219 765-780 (784)
44 KOG0526 Nucleosome-binding fac 30.8 35 0.00076 40.1 2.6 15 664-678 465-479 (615)
45 KOG1241 Karyopherin (importin) 30.6 2.8E+02 0.006 34.5 9.9 190 223-425 186-416 (859)
46 PHA02734 coat protein; Provisi 30.3 1.6E+02 0.0034 28.7 6.3 68 477-548 8-75 (149)
47 PF12074 DUF3554: Domain of un 30.0 7.7E+02 0.017 27.0 13.7 210 211-443 23-251 (339)
48 KOG1824 TATA-binding protein-i 29.0 5.6E+02 0.012 32.9 12.1 272 66-495 312-601 (1233)
49 KOG3677 RNA polymerase I-assoc 28.9 4.2E+02 0.0091 30.9 10.4 151 329-517 273-439 (525)
50 PF02854 MIF4G: MIF4G domain; 28.0 3.5E+02 0.0076 26.3 8.9 82 245-327 31-117 (209)
51 PF09026 CENP-B_dimeris: Centr 27.7 20 0.00043 33.1 0.0 18 124-141 42-59 (101)
52 KOG2072 Translation initiation 27.7 1.4E+03 0.029 29.1 17.7 179 159-367 178-398 (988)
53 PTZ00479 RAP Superfamily; Prov 27.5 3E+02 0.0066 31.9 9.1 196 205-442 115-325 (435)
54 KOG2229 Protein required for a 26.9 1.2E+03 0.025 28.1 16.7 63 225-292 292-356 (616)
55 PRK02363 DNA-directed RNA poly 26.8 36 0.00079 33.0 1.6 37 631-671 68-105 (129)
56 PF09073 BUD22: BUD22; InterP 26.3 58 0.0013 37.5 3.4 13 668-680 212-224 (432)
57 COG5095 TAF6 Transcription ini 25.0 5E+02 0.011 29.2 9.8 124 207-361 194-325 (450)
58 KOG0212 Uncharacterized conser 24.4 3.8E+02 0.0082 32.4 9.3 97 250-348 335-448 (675)
59 PHA03154 hypothetical protein; 23.8 6.2E+02 0.013 27.9 10.1 143 210-380 55-222 (304)
60 KOG2153 Protein involved in th 23.7 1.4E+03 0.031 28.1 14.7 34 386-423 357-390 (704)
61 KOG1832 HIV-1 Vpr-binding prot 23.5 29 0.00062 43.1 0.3 84 9-101 1406-1492(1516)
62 KOG4368 Predicted RNA binding 23.5 2.8E+02 0.006 33.4 7.9 59 350-427 114-174 (757)
63 KOG4542 Predicted membrane pro 23.3 45 0.00097 30.3 1.3 17 52-72 76-92 (96)
64 KOG2038 CAATT-binding transcri 23.1 53 0.0011 40.4 2.3 64 656-719 891-958 (988)
65 KOG1248 Uncharacterized conser 22.9 1.1E+03 0.024 31.0 13.3 144 262-431 106-259 (1176)
66 KOG3064 RNA-binding nuclear pr 22.6 33 0.00071 37.0 0.4 71 646-716 200-283 (303)
67 COG3296 Uncharacterized protei 21.5 24 0.00053 34.3 -0.7 30 388-417 112-142 (143)
68 PF05918 API5: Apoptosis inhib 20.6 92 0.002 37.2 3.6 91 240-340 48-140 (556)
No 1
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-153 Score=1279.46 Aligned_cols=584 Identities=42% Similarity=0.718 Sum_probs=526.1
Q ss_pred cccccCcccCcchhhhccCCCCCcccchhHHHHHHHHHHHHhhcChHHHHhhhhhhhhhccCCCCCCccccccc--cccc
Q 004631 6 KARNLDHEICDDEMEEQDETSRPVSKSKKVAKEHKEQLQRLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVETD--MEDA 83 (741)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hk~~L~~LkekDPEFykyLqEnD~~LL~F~~~d~~dded~~--~ed~ 83 (741)
-++..++++...+.+..++ ..++..++.++.|+++|++|+++|||||+||++||++||+|++ |.|++++.| ++|.
T Consensus 37 ~~q~~~a~~~~~~~~~~~~--~~~~~~kg~~~~hk~~l~~l~~~Dp~f~~~~~~~dk~ll~~~~-D~d~d~~lE~~d~Dl 113 (661)
T KOG2256|consen 37 QVQKKDAEDTEREQDDKVD--GKVTSKKGGASKHKKELEKLKDKDPEFFKFLKEEDKELLNFKE-DSDDDEDLEEPDEDL 113 (661)
T ss_pred chhhhhhcccccccccccc--cccccccchhhhHHHHhhhccccCcHHHHHHHhhhHHHhCCCC-CccchhhccCCcccc
Confidence 3445555555444442222 2456678999999999999999999999999999999999996 333333222 1221
Q ss_pred cc-ccccCCC-C---CCcccccCCCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCCCccccEEEcCh
Q 004631 84 EM-QEDEDVG-P---DMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSS 158 (741)
Q Consensus 84 e~-~~~~~~~-~---~~~~~~~~~~~~~lT~~~v~~W~~~l~~~~s~~alr~lv~AFRaA~~~~~~~~~~~~~ky~I~ds 158 (741)
++ .++++++ + +.+...+..+.+.||..||.+|++++...++++.+|++++||||||+|+.+++. .+++|.|+|+
T Consensus 114 ed~~~d~~d~~~~~~~~~~~~~~~~~k~it~~~V~~w~~~l~~~~~~~~~r~vv~af~aAva~~~~~~~-e~~ky~i~ds 192 (661)
T KOG2256|consen 114 EDFSEDEEDDEEDEIDKETDKKKNSGKVITVSNVYSWKQQLEQETSLTLVRRVVQAFRAAVAYGGEDSA-EAPKYVITDS 192 (661)
T ss_pred cccccccchhhhhhcccchhhhhcccchhhHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhcccccc-cccceeechH
Confidence 11 1111111 1 111222234455899999999999999999999999999999999999987743 5799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHhhhc
Q 004631 159 SVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFS 238 (741)
Q Consensus 159 ~VFn~vv~~~L~~lp~~l~~lL~~~~~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l 238 (741)
++||+||.+||+++|++|+++|+++..++.... +....+|.++++++|+|++++||||+++||+++++++|++++++
T Consensus 193 ~~Fn~vv~~~lq~~~~~l~~ll~~k~~~~~~~~---~~~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l 269 (661)
T KOG2256|consen 193 EAFNAVVIFCLQEMPDILRKLLRGKVDKDKSLF---LKTASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVL 269 (661)
T ss_pred HHHHHHHHHHHHHhHHHHHHHcCCCcCCCcccc---ccccccchhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999875444322 22334499999999999999999999999999999999999999
Q ss_pred ceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhccccCccchhhHHHHHH
Q 004631 239 SLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSN 318 (741)
Q Consensus 239 ~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N 318 (741)
+|||++||+++|.++|++|++||||++++|++||+||+++|+.....|++.|||+||.+||+||++|+++|||+||||+|
T Consensus 270 ~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~ 349 (661)
T KOG2256|consen 270 VPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQN 349 (661)
T ss_pred HHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecchhhHHHHHHHHHHHh-ccCCCCCCccchhhHHHHH
Q 004631 319 CVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVC-AYCSEADMKPLAYPLTQII 397 (741)
Q Consensus 319 ~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs-~~~~~s~L~pLiYPLvQIi 397 (741)
|++||||+|+..+|||||+|||||||||||||+.++|++++.||||||||||+||++||| ++..+++|+||+|||||||
T Consensus 350 slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi 429 (661)
T KOG2256|consen 350 SLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVI 429 (661)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 8878899999999999999
Q ss_pred HhhhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHHHHhhcccccCCCCCCCCCccccchhhccCccccccHHHH
Q 004631 398 SGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQ 477 (741)
Q Consensus 398 ~G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~s~~~~kk~k~~~~kplDf~~~LKvsks~L~t~~yq 477 (741)
+|||||+||+|||||||||||+||+||++||+||||+|+|+|||.+..++++|++++++|+||.++||||+.+|++++||
T Consensus 430 ~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq 509 (661)
T KOG2256|consen 430 LGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQ 509 (661)
T ss_pred HHHhhhcCcccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHhHhhhcchHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCh-
Q 004631 478 EACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNP- 556 (741)
Q Consensus 478 d~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K~~kv~~~~k~lK~Li~kIeens~~I~~kR~~v~f~p~d~- 556 (741)
++|++++++||++|+++||++||||||++|++++||+|+|+|++++|++.+++|+++|++|++||.++|..++|+|+|.
T Consensus 510 ~~~ieqv~~lL~ey~a~~s~~IaFPELv~p~i~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~~v~F~pnD~~ 589 (661)
T KOG2256|consen 510 DGVIEQVIELLLEYFALFSKSIAFPELVLPVIMRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRNKVKFSPNDQQ 589 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhhcCCCChHHHHHHHHHHHHHHHhhhhhccce
Q 004631 557 SASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESSVL 597 (741)
Q Consensus 557 ~v~~fle~~~~~~~tPL~~y~~~~r~~~~~~~~~l~e~~v~ 597 (741)
+|..| +.+..|.+|||++||++||++++++++..+|+...
T Consensus 590 ~V~af-e~~~~~~~TPl~~yy~~~rk~~~~k~r~~~e~~~~ 629 (661)
T KOG2256|consen 590 AVSAF-EQDLDWNKTPLGQYYSSWRKVREEKNRLAVESSEE 629 (661)
T ss_pred HHHHH-HHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 77777 58889999999999999999999999998887654
No 2
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=100.00 E-value=1.6e-99 Score=805.74 Aligned_cols=297 Identities=47% Similarity=0.837 Sum_probs=291.5
Q ss_pred CcchhHHHHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecc
Q 004631 284 SDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYE 363 (741)
Q Consensus 284 ~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYN 363 (741)
+.++|.|||+||.+||+|||+||++|+|+||||+||++|||++|+++||||||+|||||||||||||+.++||+|++|||
T Consensus 1 ~~~~~~~lK~~Y~~~v~~~k~~~~~t~~~i~fm~n~~~EL~~ld~~~sY~~aF~yIRQLAi~LR~a~~~~~k~~~~~Vyn 80 (299)
T PF03715_consen 1 SDFLETCLKGMYLAYVRNSKFTSPNTLPHINFMKNCLVELYGLDPDVSYQHAFVYIRQLAIHLRNAMTSKKKEAYKSVYN 80 (299)
T ss_pred CchHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhheeeee
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhc-cCCCCCCccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHHHHhh
Q 004631 364 WKFINCLELWTGAVCA-YCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLE 442 (741)
Q Consensus 364 WQfv~sL~lWs~VLs~-~~~~s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~ 442 (741)
|||||||+||++|||+ +..+++|+||||||||||+|+|||+||+|||||||||||+|++||++||+||||+|+|+|||+
T Consensus 81 Wqfv~~l~lW~~vls~~~~~~~~L~~LiyPLvqi~~g~i~L~pt~ry~Plrlh~ir~L~~L~~~t~~fIPl~~~lleiL~ 160 (299)
T PF03715_consen 81 WQFVHCLDLWSRVLSAAAKKESQLRPLIYPLVQIIIGVIKLIPTARYFPLRLHCIRSLNRLSQSTGTFIPLAPYLLEILE 160 (299)
T ss_pred HHHHHHHHHHHHHHhcccCcchhhHhHHHHHHHHHHHHHhhcCccccCchHHHHHHHHHHHHHhcCceEecHHHHHHHHh
Confidence 9999999999999999 777899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccchhhccCccccccHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHhHhhhcchH
Q 004631 443 MKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVE 522 (741)
Q Consensus 443 s~~~~kk~k~~~~kplDf~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K~~kv~ 522 (741)
+.+++++|++++++|+||++.||+++++++|++||++|++++++||+||+++||+||||||+++|++.+||+|+|+|+++
T Consensus 161 ~~~~~~~~k~~~~kp~d~~~~Lk~~k~~l~t~~~~d~v~e~~~~LL~e~la~~s~sIaFPEl~~pii~~LKr~~K~~k~~ 240 (299)
T PF03715_consen 161 SSEFNKKPKKSSMKPLDFECLLKVSKSQLRTRQFQDGVIEEVYELLLEYLAIYSYSIAFPELALPIIVQLKRFLKSCKNA 240 (299)
T ss_pred ChhhcCCCCCCCCCCcCHHHHhhccHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCh-HHhhHHHHhhhcCCCChHHHHHHHH
Q 004631 523 RFRKEMRQLIRQVDANSEFTNERRMSITFQPNNP-SASFFLEDEKKAGSSPLSRYVAILR 581 (741)
Q Consensus 523 ~~~k~lK~Li~kIeens~~I~~kR~~v~f~p~d~-~v~~fle~~~~~~~tPL~~y~~~~r 581 (741)
+|++++|+|+++|++|++||+++|++++|+|+|. +|+.|+ .+.++++|||++||++||
T Consensus 241 ~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe-~~~~~~~tPl~~~~~~~r 299 (299)
T PF03715_consen 241 KFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFE-SELKWEGTPLGKYYASWR 299 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHH-HhcccCCCCHHHHHHhhC
Confidence 9999999999999999999999999999999999 999997 556799999999999987
No 3
>COG5604 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-89 Score=727.46 Aligned_cols=432 Identities=23% Similarity=0.368 Sum_probs=400.3
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCCCccccEEEcChHHHHHHHHHHHHHHHHHHHHhc
Q 004631 101 KPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLL 180 (741)
Q Consensus 101 ~~~~~~lT~~~v~~W~~~l~~~~s~~alr~lv~AFRaA~~~~~~~~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~lL 180 (741)
.+++..||...+.+|++++...+++..+++++.||++|+..+.+++ ..||.|+|..+|+.++.+++.++|.++..|.
T Consensus 88 ~s~ki~L~~~~~qkw~k~l~~~~sl~~lqk~~~afkaaa~ln~eEe---DlKyti~d~k~f~~l~~l~~~~vp~a~~~~~ 164 (523)
T COG5604 88 NSKKISLNQVSTQKWRKELDLLASLAYLQKLSGAFKAAALLNNEEE---DLKYTIDDVKFFARLKILQDLRVPYAEILLT 164 (523)
T ss_pred cccceeeeHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhHH---HHHhhhhHHHHHHHHHHHHHhhhhHHHHHhc
Confidence 4557889999999999999999999999999999999999988653 5899999999999999999999999999999
Q ss_pred CCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhh
Q 004631 181 KLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFW 260 (741)
Q Consensus 181 ~~~~~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lW 260 (741)
|+...+|.+- +.+..+.-++++.+|+|-+++++||+.+||...++..|+...+.+ .+++.
T Consensus 165 p~~~~KG~~~----l~s~~~v~~i~~~~Ks~~gsvl~Lln~~tn~~~a~l~l~~a~n~i-----------~~i~s----- 224 (523)
T COG5604 165 PFFEKKGYQN----LSSALDVIHIKKFSKSPNGSVLQLLNIFTNHSKARLDLQKAVNHI-----------CKIDS----- 224 (523)
T ss_pred hhHhhccccc----cCCCcCeEeeeehhcCCCchHHHHHHHhccchHHHHHHHHHHHHH-----------HHHhh-----
Confidence 9977777652 233344448999999999999999999999999999999988773 11221
Q ss_pred ccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHH
Q 004631 261 GTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIR 340 (741)
Q Consensus 261 st~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIR 340 (741)
++++++|.+++..|..+.. |..|+.++++.|||++|+++|||+||....|++||.|||
T Consensus 225 -----t~~~a~f~~l~s~~l~f~k-----------------s~~t~v~~~d~in~lqnsa~nl~~Lde~~~~ki~f~yi~ 282 (523)
T COG5604 225 -----TLSVAVFQVLYSPLLDFFK-----------------SSPTEVNDFDTINFLQNSAKNLFELDESYLYKIGFSYIR 282 (523)
T ss_pred -----hheehhHHHHHHHHHHHhh-----------------cCccccccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4999999999987665432 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccchhhceecchhhHHHHHHHHHHHhccCC---CCCCccchhhHHHHHHhhhhcccCccccchhhHHH
Q 004631 341 QLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCS---EADMKPLAYPLTQIISGVARLVPTARYFPLRLRCV 417 (741)
Q Consensus 341 QLAihLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~~~---~s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~i 417 (741)
||||||||+|...++.+-+.||||||||+||||.+||+..|- ++.++.|+||+||+++|+|||+||.||||||||||
T Consensus 283 qLa~hLkn~v~~p~k~drk~Vynwqyv~Sldfwlrvisfa~wng~eS~~~~l~~~lvq~Tl~vIrlipT~Q~yplrfhll 362 (523)
T COG5604 283 QLAIHLKNTVLNPRKVDRKMVYNWQYVHSLDFWLRVISFAVWNGIESKLLRLHYPLVQYTLGVIRLIPTYQDYPLRFHLL 362 (523)
T ss_pred HHHHHHHHHhcCccchhhHHHhhHHHhhhcchHHHHHHHHHHhhhhhHHHHhhhHHHHHHhhheeecCcccccchhHHHH
Confidence 999999999999998888889999999999999999997543 68999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccchHHHHHHhhcccccCCCCCCCCCccccchhhccCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Q 004631 418 RMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSY 497 (741)
Q Consensus 418 r~L~~Ls~~Tg~FIPl~p~LleiL~s~~~~kk~k~~~~kplDf~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~S~ 497 (741)
|+|++|+++||+|||++|+|+|||.+..+.++|+++++++|||+++||++++||+|+.||++|++|++.||++|+++||.
T Consensus 363 rSLIrl~r~s~vyIPLs~~l~eiL~s~~~~k~p~as~l~~fDfd~~lk~~~e~Lrsk~yq~~viee~~~lL~eyfalfsk 442 (523)
T COG5604 363 RSLIRLSRGSGVYIPLSPYLVEILKSAISVKNPKASVLRKFDFDSMLKPDTEYLRSKEYQMGVIEEASSLLLEYFALFSK 442 (523)
T ss_pred HHHHHHHhcCceEEeccHHHHHHHHHHHHhcCchhhhccccCchhhcCCCHHHHhHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhHHHHHHhHhhhcchHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCh-HHhhHHHHhhhcCCCChHHH
Q 004631 498 SVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNP-SASFFLEDEKKAGSSPLSRY 576 (741)
Q Consensus 498 sIAFPEL~~Pii~~LKrf~K~~kv~~~~k~lK~Li~kIeens~~I~~kR~~v~f~p~d~-~v~~fle~~~~~~~tPL~~y 576 (741)
+||||||+.|+|++||+|.+.+ ++++.+-+++.+|+++++||.++|.++.|+|.|. +|.+|. ..++|..||||+|
T Consensus 443 nIaFPELv~pvI~~lkrl~k~s---k~nk~vlt~vnkLeqq~kfv~eKRn~vkfs~iD~s~Vs~Fe-~didw~~TpLG~y 518 (523)
T COG5604 443 NIAFPELVGPVISELKRLRKGS---KLNKVVLTMVNKLEQQSKFVLEKRNKVKFSPIDGSTVSSFE-SDIDWRSTPLGQY 518 (523)
T ss_pred cCCchhHhHHHHHHHHHHHhcc---chhhHHHHHHHHHhhhhHHHHHHhhcCccCCCChHHHHHHH-HhhhhccCCccce
Confidence 9999999999999999999988 6788999999999999999999999999999999 999996 8889999999999
Q ss_pred HHHHH
Q 004631 577 VAILR 581 (741)
Q Consensus 577 ~~~~r 581 (741)
+..+|
T Consensus 519 V~~qr 523 (523)
T COG5604 519 VSDQR 523 (523)
T ss_pred eeccC
Confidence 98765
No 4
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=99.05 E-value=1.4e-08 Score=122.81 Aligned_cols=249 Identities=13% Similarity=0.117 Sum_probs=153.3
Q ss_pred chhHHHHHHHHHHHhhccccCccchhhHHH--HHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecc
Q 004631 286 CLDDCFKGIYKAYILNCHFINAVKLQHIQF--LSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYE 363 (741)
Q Consensus 286 ~le~~LK~~Y~ayv~n~k~~n~~tl~~Inf--M~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYN 363 (741)
++-..|+.||..|.+..-..++.+||.+.- +-.-+.-||.. .+-+-.|.
T Consensus 513 ~~r~~L~~~~~~~~~~~l~~~~~~~P~l~~Lvllklv~~lFPT----------------------------SD~~HpVV- 563 (840)
T PF04147_consen 513 CFREVLKEMQKRFRKGALKPKERSWPSLSDLVLLKLVGTLFPT----------------------------SDFRHPVV- 563 (840)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCCChhHHHHHHHHHHhcCc----------------------------ccccCcch-
Confidence 344577889999888644445566876542 12233334422 12222222
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHHHHhhc
Q 004631 364 WKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEM 443 (741)
Q Consensus 364 WQfv~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~s 443 (741)
.-|+=|-++.|++ |.-..++.++..|+=+.+..--...+-||+|=-+..+..++.++.....-..+.|+..--..+
T Consensus 564 ---TPalllm~~~L~q-~~v~s~~di~~GlfL~~l~l~y~~~SKR~vPEvinFL~~~L~~~~p~~~~~~~~~~~~~~~~~ 639 (840)
T PF04147_consen 564 ---TPALLLMSEYLSQ-CRVRSLRDIASGLFLCTLLLEYQSLSKRFVPEVINFLLGLLLLLVPEKSKKSPSPFFPSKKPS 639 (840)
T ss_pred ---hHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCcccccCCCCCCCCCcc
Confidence 2344555666665 323345555555443333222223577888877777766666653221111001110000011
Q ss_pred cc--ccCCC--CCCCCCccccchhhccCccccccHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHhHhhhc
Q 004631 444 KE--LNRPP--SGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKST 519 (741)
Q Consensus 444 ~~--~~kk~--k~~~~kplDf~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K~~ 519 (741)
.. +.... +.....+++|..++ ......+..++-.|+..++.||..++.+|+...||||++.|+...|.++..
T Consensus 640 ~~L~l~~~~~~~~~~~~~l~l~~l~--~~~~~~~~~~k~~lL~~~l~ll~~~~~l~~~~~af~eif~p~~~lL~~l~~-- 715 (840)
T PF04147_consen 640 SSLRLSSSSKSKSSEPKKLSLSDLF--SSSEEDSDQFKLSLLATALRLLDRFADLYSSLPAFPEIFEPFLSLLSHLDS-- 715 (840)
T ss_pred cceeecccccccccCcccCChhhhc--ccccccchhHHHHHHHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHHHHHh--
Confidence 11 12211 12234447877777 677888999999999999999999999999999999999999999999977
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCh-HHhhHHHHhhhcCCCC
Q 004631 520 KVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNP-SASFFLEDEKKAGSSP 572 (741)
Q Consensus 520 kv~~~~k~lK~Li~kIeens~~I~~kR~~v~f~p~d~-~v~~fle~~~~~~~tP 572 (741)
....+...++.++++|.+........|.++.+.-.-+ .+..|. ..+...-.|
T Consensus 716 ~~~~~~~~l~~l~~~l~~~~~~~~~~r~PL~l~~~kP~~I~~~~-Pkfee~f~~ 768 (840)
T PF04147_consen 716 LPKALPEKLQELLEKLSKILKEARRSRRPLQLQKHKPIPIKTFE-PKFEENFDP 768 (840)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccCCCceeccCCCccccccC-CccccccCC
Confidence 4456678899999999999999998899998876665 555552 444433344
No 5
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00055 Score=80.16 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhccCCCCCCccchhhHHHHHHhhhhcc-cCccccchhhHHHHHHHHHHhhcCccccc-hHHHHHHhhcc
Q 004631 367 INCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLV-PTARYFPLRLRCVRMLNRIAASTGTFIPV-SMLLLDMLEMK 444 (741)
Q Consensus 367 v~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLi-Pt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl-~p~LleiL~s~ 444 (741)
.-||=|-+.+|+++ +-..|+.+...|+ ++.-++..+ -+-||.|=-+..+|.++.++--. ++|. .|+=++++.+-
T Consensus 534 tPalllm~e~L~~~-p~~Sl~diakglf-l~~ivleyvs~SkRyvPEvi~F~~~iL~~a~p~--k~~~~~~~~F~~~~~l 609 (823)
T KOG2147|consen 534 TPALLLMSEALSQS-PIASLQDIAKGLF-LANIVLEYVSESKRYVPEVINFLRGILLLAIPE--KSSQEAPNPFEILKSL 609 (823)
T ss_pred cHHHHHHHHHHHhC-cchhHHHHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccc--ccccccCCCcccCCCc
Confidence 34666777777763 3345666666554 222233333 46789998888888888876422 2222 22222222110
Q ss_pred --ccc--CCCCCCCCCccccchhhccCccccccHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHhHhhhcc
Q 004631 445 --ELN--RPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTK 520 (741)
Q Consensus 445 --~~~--kk~k~~~~kplDf~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K~~k 520 (741)
.+. -........|.-+. -.--+.+.|..++-.|+..+++||-.+..+|.+-.||||+++|+...|-.++..++
T Consensus 610 selL~l~a~~d~~~l~p~~L~---l~~~s~~~tp~~~~svL~~~l~li~~~~~iy~~l~af~eI~~pi~~lL~~~l~~e~ 686 (823)
T KOG2147|consen 610 SELLCLPANYDVTKLEPQSLS---LIFLSSLSTPDLKVSVLRAVLELIEHLVLIYGSLPAFYEIFFPIFLLLLEYLQAES 686 (823)
T ss_pred chhhccccccccccccccccc---hhhhcCCCChhHHHHHHHHHHHHHHHHHHHHcccccHHHHHHhHHHHHHHHHhhcc
Confidence 000 00111122233222 11124567777999999999999999999999999999999999999999987777
Q ss_pred h-HHHHHHHHHHHHHHHHhHHHHHHhhcCCCC
Q 004631 521 V-ERFRKEMRQLIRQVDANSEFTNERRMSITF 551 (741)
Q Consensus 521 v-~~~~k~lK~Li~kIeens~~I~~kR~~v~f 551 (741)
. ..+...+..++..++....| +.|.++..
T Consensus 687 ~p~~l~Ekl~~~l~~vek~~~~--~~~kPLal 716 (823)
T KOG2147|consen 687 LPQELQEKLEDTLALVEKLTGF--AERKPLAL 716 (823)
T ss_pred CcHHHHHHHHHHHHHHHHHhhh--hhcccchh
Confidence 4 47777888888888888773 34445443
No 6
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=97.24 E-value=0.065 Score=65.90 Aligned_cols=169 Identities=16% Similarity=0.158 Sum_probs=92.9
Q ss_pred chhhHH-HHHHHHHHhhccCCCc--hhHHHHHHHHHHHHHcCCcchhHHHHHHHH-----HHHhhccccCccchhhHHHH
Q 004631 245 FPSLLR-KYVKAALHFWGTGGGA--LPVVAFLFLRDLCIRLGSDCLDDCFKGIYK-----AYILNCHFINAVKLQHIQFL 316 (741)
Q Consensus 245 f~kl~k-~~LK~lv~lWst~~~~--vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~-----ayv~n~k~~n~~tl~~InfM 316 (741)
||.+.= .|++.+-.||+|++-- |---|+++|..+....+-..+..+..|+|+ .|++-||..-| ..|||+
T Consensus 537 ~P~l~~Lvllklv~~lFPTSD~~HpVVTPalllm~~~L~q~~v~s~~di~~GlfL~~l~l~y~~~SKR~vP---EvinFL 613 (840)
T PF04147_consen 537 WPSLSDLVLLKLVGTLFPTSDFRHPVVTPALLLMSEYLSQCRVRSLRDIASGLFLCTLLLEYQSLSKRFVP---EVINFL 613 (840)
T ss_pred CCChhHHHHHHHHHHhcCcccccCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCh---HHHHHH
Confidence 555433 4678888889999843 777888999988888777777777776665 57777666555 589999
Q ss_pred HHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecchhhHHHHHHHHHHHhccCCCCCC-ccchhhHHH
Q 004631 317 SNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADM-KPLAYPLTQ 395 (741)
Q Consensus 317 ~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~~~~s~L-~pLiYPLvQ 395 (741)
.+++.-+..-.... ...+|.-++...-.|+ .+....+..+..+. |.|+.-.-........+ -.|++-++.
T Consensus 614 ~~~L~~~~p~~~~~-~~~~~~~~~~~~~~L~----l~~~~~~~~~~~~~----l~l~~l~~~~~~~~~~~k~~lL~~~l~ 684 (840)
T PF04147_consen 614 LGLLLLLVPEKSKK-SPSPFFPSKKPSSSLR----LSSSSKSKSSEPKK----LSLSDLFSSSEEDSDQFKLSLLATALR 684 (840)
T ss_pred HHHHHHhCCCcccc-cCCCCCCCCCccccee----ecccccccccCccc----CChhhhcccccccchhHHHHHHHHHHH
Confidence 99998775332222 2233333332222222 11111122222222 44443331111111222 246777777
Q ss_pred HHHhhhhcccCccccchhhHHH-HHHHHHHh
Q 004631 396 IISGVARLVPTARYFPLRLRCV-RMLNRIAA 425 (741)
Q Consensus 396 Ii~G~irLiPt~ry~PLR~h~i-r~L~~Ls~ 425 (741)
++-.++.|.-..-=||--|.-+ .+|.+|..
T Consensus 685 ll~~~~~l~~~~~af~eif~p~~~lL~~l~~ 715 (840)
T PF04147_consen 685 LLDRFADLYSSLPAFPEIFEPFLSLLSHLDS 715 (840)
T ss_pred HHHHHHHHHccCcCHHHHHHHHHHHHHHHHh
Confidence 7777777764433344444333 34444443
No 7
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.067 Score=62.82 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcChHHHHhhhhhhhhhccCCCCCC
Q 004631 36 AKEHKEQLQRLQEKDPEFFKFLQEHDKELLEFDDDDI 72 (741)
Q Consensus 36 ~~~hk~~L~~LkekDPEFykyLqEnD~~LL~F~~~d~ 72 (741)
.++|-++|-++++ |||||+||+++|.+|++|.++++
T Consensus 86 ~~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~d~~ 121 (661)
T KOG2256|consen 86 LKEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSEDEE 121 (661)
T ss_pred HHhhhHHHhCCCC-CccchhhccCCcccccccccccc
Confidence 3566679999999 99999999999999999955443
No 8
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.27 E-value=5.4 Score=43.36 Aligned_cols=186 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhhc-CcHHHHHHHHHHhhhcceeeeechhhHHH--------HHHHHHHhhccCCCchhHHHHHHHHHH
Q 004631 208 VKSYLGNSLHVLNQM-TDTEMISFTLRRLKFSSLFLAAFPSLLRK--------YVKAALHFWGTGGGALPVVAFLFLRDL 278 (741)
Q Consensus 208 iKsyl~sll~LL~~l-td~~~l~~vL~~l~~l~p~l~~f~kl~k~--------~LK~lv~lWst~~~~vrv~AFl~Lr~l 278 (741)
...|..-+++||+.+ ++.+++.++|.-+..++.---.+-.+... ....++++-..++.-++..|..++-.+
T Consensus 53 ~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 53 GDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp ---------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345667777999999 99999999999888866433333232222 334555544445433776666666666
Q ss_pred HHHcCCcchh---HHHHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHH---HHHHHHHHHHHHHhhh
Q 004631 279 CIRLGSDCLD---DCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAF---VFIRQLAMILRDAFNV 352 (741)
Q Consensus 279 ~~~~~~~~le---~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF---~YIRQLAihLRna~~~ 352 (741)
+...+...-. .+| ..|..++++ ..+..+-+.+...-.|+.+|+..+ .|+..| .++..|.-.||.....
T Consensus 133 l~~~~~~~~~~~~~~l-~~ll~~L~~--~l~~~~~~~~~~av~~L~~LL~~~---~~R~~f~~~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEAL-PKLLQWLSS--QLSSSDSELQYIAVQCLQNLLRSK---EYRQVFWKSNGVSPLFDILRKQATN 206 (312)
T ss_dssp HTSTTT--HHHHHHHH-HHHHHHHH---TT-HHHH---HHHHHHHHHHHTSH---HHHHHHHTHHHHHHHHHHHH-----
T ss_pred HHcCCccccchHHHHH-HHHHHHHHH--hhcCCCcchHHHHHHHHHHHhCcc---hhHHHHHhcCcHHHHHHHHHhhccc
Confidence 5554443333 344 566667766 344455556677788999998654 677777 5666666667644444
Q ss_pred ccchhhceecchhhHHHHHHHHHHHhccC-CCCCCccchhhHHHHHHhhhhc
Q 004631 353 KTKEAFRKVYEWKFINCLELWTGAVCAYC-SEADMKPLAYPLTQIISGVARL 403 (741)
Q Consensus 353 ktKe~~k~VYNWQfv~sL~lWs~VLs~~~-~~s~L~pLiYPLvQIi~G~irL 403 (741)
.+.-.+|. ||--++=+|.--..... ..-.=..+|..|++|+-.+.|-
T Consensus 207 ~~~~~~Ql----~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 207 SNSSGIQL----QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKE 254 (312)
T ss_dssp ----HHHH----HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SH
T ss_pred CCCCchhH----HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccc
Confidence 45555555 45566667853332111 0000011788888887766654
No 9
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=87.74 E-value=15 Score=44.49 Aligned_cols=138 Identities=20% Similarity=0.274 Sum_probs=77.5
Q ss_pred ccEEEcChHHHHHHHHHH----HHHHHHHHHHhcCCCC---CCCCcccccccccccchhhhHHHHHHHHHHHHHH--hhh
Q 004631 151 VKFHIMSSSVFNKIMLFV----LSEMDGILRKLLKLPS---SGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHV--LNQ 221 (741)
Q Consensus 151 ~ky~I~ds~VFn~vv~~~----L~~lp~~l~~lL~~~~---~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~L--L~~ 221 (741)
-.|+|.-|.-|.+++.+. +.++|-|+.++...-. ..|++ ++..++..++-.|+..+-.- +..
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s~ed~~lIVeRI~kchhpkL~egNk---------~kl~kf~~~LLqy~~dLs~~~p~~~ 458 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLSLEDMPLIVERIRKCHHPKLKEGNK---------KKLEKFYGVLLQYFDDLSKQDPLTN 458 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccChhhhHHHHHHHHHhcCCccccchH---------HHHHHHHHHHHHHHHHHhccCcchh
Confidence 579999999999988875 4677888776543321 22332 34455666666666655432 122
Q ss_pred cCcHHHHHHHHHHhhhcceeeeechh---hHH-----------------------HHHHHHHHhhccCCC--chhHHHHH
Q 004631 222 MTDTEMISFTLRRLKFSSLFLAAFPS---LLR-----------------------KYVKAALHFWGTGGG--ALPVVAFL 273 (741)
Q Consensus 222 ltd~~~l~~vL~~l~~l~p~l~~f~k---l~k-----------------------~~LK~lv~lWst~~~--~vrv~AFl 273 (741)
++--+++..-|.++.++.|+..+.-. +.. -|++..--|++|++- .|=.-|++
T Consensus 459 ~~ll~~l~~~L~~l~q~~pe~~~~~~~~~ll~~~~e~~e~~k~k~~~~~psl~~Lv~f~l~g~LFptSDf~HpVVtPall 538 (823)
T KOG2147|consen 459 FQLLEMLVAHLISLAQMFPEIASIVRCVRLLERIHEKGEQIKQKNHPVSPSLDDLVFFKLTGLLFPTSDFRHPVVTPALL 538 (823)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHhcccCccCCCCcchhhhhhhhcccccccccccccccHHHH
Confidence 22234555666667777787654321 111 012222223344442 25566777
Q ss_pred HHHHHHHHcCCcchhHHHHHHHHH
Q 004631 274 FLRDLCIRLGSDCLDDCFKGIYKA 297 (741)
Q Consensus 274 ~Lr~l~~~~~~~~le~~LK~~Y~a 297 (741)
++.....+.+-.-+..+-+|+|++
T Consensus 539 lm~e~L~~~p~~Sl~diakglfl~ 562 (823)
T KOG2147|consen 539 LMSEALSQSPIASLQDIAKGLFLA 562 (823)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHH
Confidence 777777766666666666665543
No 10
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=85.43 E-value=26 Score=40.44 Aligned_cols=176 Identities=16% Similarity=0.234 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHhhhccee-------eeec----hhhHHHHHHHHHHhhccCCCchhHHHHHHHHH
Q 004631 209 KSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLF-------LAAF----PSLLRKYVKAALHFWGTGGGALPVVAFLFLRD 277 (741)
Q Consensus 209 Ksyl~sll~LL~~ltd~~~l~~vL~~l~~l~p~-------l~~f----~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~ 277 (741)
-.|...+++||+.++..+++..+|.-+..++.- |.-. +.....|++ ++ ...+.-+...||-+|-.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~-lL---~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFN-LL---NRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHH-HH---cCCchhHHHHHHHHHHH
Confidence 567778888999999999999998877765543 2222 233344444 22 23333388788777777
Q ss_pred HHHHcCCcchhHHHHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHH---HHHHHHHHHHHHhhhcc
Q 004631 278 LCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFV---FIRQLAMILRDAFNVKT 354 (741)
Q Consensus 278 l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~---YIRQLAihLRna~~~kt 354 (741)
++...+.. .+......|..++.+ ...+++....+.+--+|+.+|+..+ .|++.|. .+.-|.-.||++.
T Consensus 128 l~~~~~~~-~~~~~l~~~~~~l~~-~l~~~~~~~~~~~~v~~L~~LL~~~---~~R~~f~~~~~v~~L~~~L~~~~---- 198 (429)
T cd00256 128 LACFGLAK-MEGSDLDYYFNWLKE-QLNNITNNDYVQTAARCLQMLLRVD---EYRFAFVLADGVPTLVKLLSNAT---- 198 (429)
T ss_pred HHhcCccc-cchhHHHHHHHHHHH-HhhccCCcchHHHHHHHHHHHhCCc---hHHHHHHHccCHHHHHHHHhhcc----
Confidence 65433322 222222335455542 2222344556667678999999886 5777775 4455555566543
Q ss_pred chhhceecchhhHHHHHHHHHHHhccCCCCCCccchhhHHHHHHhhhhccc
Q 004631 355 KEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVP 405 (741)
Q Consensus 355 Ke~~k~VYNWQfv~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLiP 405 (741)
-.+| =||--++=+|.--...... ..+.. |-+++.++-+++..|
T Consensus 199 -~~~Q----l~Y~~ll~lWlLSF~~~~~-~~~~~--~~~i~~l~~i~k~s~ 241 (429)
T cd00256 199 -LGFQ----LQYQSIFCIWLLTFNPHAA-EVLKR--LSLIQDLSDILKEST 241 (429)
T ss_pred -ccHH----HHHHHHHHHHHHhccHHHH-Hhhcc--ccHHHHHHHHHHhhh
Confidence 1233 3677788889754443211 12211 345555555555544
No 11
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=82.88 E-value=3.2 Score=47.74 Aligned_cols=227 Identities=15% Similarity=0.222 Sum_probs=127.9
Q ss_pred CcchhHHHHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecc
Q 004631 284 SDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYE 363 (741)
Q Consensus 284 ~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYN 363 (741)
.+++..+|..++..+-++.. ..=.|...|+.-++.+-....-.++-..+.+|+-.|....++.+.- .+|
T Consensus 21 ~p~~~~ll~~Lf~~i~~~~s-------~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP----~Fn 89 (435)
T PF03378_consen 21 QPFAQQLLQNLFALIEKPGS-------AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNP----RFN 89 (435)
T ss_dssp TCCHHHHHHHHHHHHHTT-S-------TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---H----HHH
T ss_pred hhhHHHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----chh
Confidence 35566677777766655433 2335777788888876666667788999999999998877776542 223
Q ss_pred hhhHHHHHHHHHHHhccCCC--CCCccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHHHh---hcCccccchHHHH
Q 004631 364 WKFINCLELWTGAVCAYCSE--ADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAA---STGTFIPVSMLLL 438 (741)
Q Consensus 364 WQfv~sL~lWs~VLs~~~~~--s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~Ls~---~Tg~FIPl~p~Ll 438 (741)
=.-..||-.-.+..+....+ ..+.+.++|+.|.|+.- --.-|+|..|+++-.|+.... -...|..++|.|+
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~----dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll 165 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ----DVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL 165 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT----T-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc
Confidence 33333444444444421111 25788888988887751 124899999999999999987 3478888999888
Q ss_pred HHhhccc--------------ccCCCCCCCCCccccchhhccCccccccHHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Q 004631 439 DMLEMKE--------------LNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFEL 504 (741)
Q Consensus 439 eiL~s~~--------------~~kk~k~~~~kplDf~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~S~sIAFPEL 504 (741)
..--+.. +.+.|... ..+-.+..+|-+=+..+.++. .|.--..+++-+.+|+-.-.....+|.+
T Consensus 166 ~p~lWe~~gniPalvrLL~a~i~k~~~~i-~~~~~l~~iLgvFQkLi~sk~-~D~~gF~LL~~iv~~~p~~~l~~yl~~I 243 (435)
T PF03378_consen 166 SPALWERRGNIPALVRLLQAYIKKDPSFI-VANNQLEPILGVFQKLIASKA-NDHYGFDLLESIVENLPPEALEPYLKQI 243 (435)
T ss_dssp SGGGGGSTTTHHHHHHHHHHHHHHHGGG-----S-CHHHHHHHHHHHT-TT-CHHHHHHHHHHHHHHS-HHHHGGGHHHH
T ss_pred CcchhccCCCcCcHHHHHHHHHHhCchhh-cchhhHHHHHHHHHHHHCCCC-cchHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 6543310 01111100 111223333333333333333 2333345666666776666666777777
Q ss_pred hhhHHHHHHhHhhhcchHHHHHHHHHH
Q 004631 505 SFIPSVRLRDFCKSTKVERFRKEMRQL 531 (741)
Q Consensus 505 ~~Pii~~LKrf~K~~kv~~~~k~lK~L 531 (741)
+..+..+|.. .+..+|++.+-.+
T Consensus 244 ~~lll~RLq~----skT~kf~~~fv~F 266 (435)
T PF03378_consen 244 FTLLLTRLQS----SKTEKFVKRFVVF 266 (435)
T ss_dssp HHHHHHHHHH----C--HHHHHHHHHH
T ss_pred HHHHHHHHhh----CCcHHHHHHHHHH
Confidence 7777777654 3445555544333
No 12
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=81.95 E-value=31 Score=41.92 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhccccCccc-hhhHHHHHHHHHHHhCCCcc-chhH--HHHHHHHHHHHH
Q 004631 290 CFKGIYKAYILNCHFINAVK-LQHIQFLSNCVVELLGVDLP-SAYQ--HAFVFIRQLAMI 345 (741)
Q Consensus 290 ~LK~~Y~ayv~n~k~~n~~t-l~~InfM~N~~vEL~~ld~~-~aYq--~AF~YIRQLAih 345 (741)
.||.+-...-.+...-.+.+ .|.++||-.++.-|=.=++. ..|- +-+.-.|++-..
T Consensus 482 alk~~i~eiq~~a~~a~~s~~~pR~rFmleti~aLKnN~~kki~~~d~e~ve~lrk~~k~ 541 (822)
T KOG2141|consen 482 ALKDIITEIQSKAASAKISAISPRLRFMLETISALKNNKLKKIPYADPERVENLRKLKKA 541 (822)
T ss_pred HHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHhcCCCcCCCcCChHHHHHHHHHHHH
Confidence 45555555555544444444 79999999999988754432 2222 226767765433
No 13
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.65 E-value=8.1 Score=45.52 Aligned_cols=167 Identities=25% Similarity=0.373 Sum_probs=91.0
Q ss_pred HHhhhcCcHH--HHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHH
Q 004631 217 HVLNQMTDTE--MISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGI 294 (741)
Q Consensus 217 ~LL~~ltd~~--~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~ 294 (741)
.||++++|++ ++..+|.-+..+..==- .| -.++|++.++.++.+-.-.++.-+-+.||++|..+... .+
T Consensus 381 tLL~tLsd~sd~vvl~~L~lla~i~~s~~-~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE-------~I 451 (675)
T KOG0212|consen 381 TLLKTLSDRSDEVVLLALSLLASICSSSN-SP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE-------RI 451 (675)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHhcCcc-cc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH-------HH
Confidence 5677776643 44444433333221111 11 33899999999998755558888999999999988754 44
Q ss_pred HHHHHh------hccccC--ccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceec-chh
Q 004631 295 YKAYIL------NCHFIN--AVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVY-EWK 365 (741)
Q Consensus 295 Y~ayv~------n~k~~n--~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VY-NWQ 365 (741)
|..+-- |.+|.+ .+++..|=+ +..||| ||--.||+.-+-+.++-|..+| +|.
T Consensus 452 Yr~~a~ILe~e~nl~FAstMV~~Ln~iLl---TStELf----------------~LR~~Lk~lsn~es~~lF~cLy~sWc 512 (675)
T KOG0212|consen 452 YRSIADILEREENLKFASTMVQALNTILL---TSTELF----------------QLRNKLKDLSNEESQNLFCCLYRSWC 512 (675)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhhhc---ccHHHH----------------HHHHHHHhccChhhhHHHHHHHHHHc
Confidence 554433 344432 222233322 455665 2333355544445566566665 232
Q ss_pred hHHHHHHHHH-HHhccCCCCCCccchhhHHHHH-------------HhhhhcccCccccchhhHHHH
Q 004631 366 FINCLELWTG-AVCAYCSEADMKPLAYPLTQII-------------SGVARLVPTARYFPLRLRCVR 418 (741)
Q Consensus 366 fv~sL~lWs~-VLs~~~~~s~L~pLiYPLvQIi-------------~G~irLiPt~ry~PLR~h~ir 418 (741)
- +.+-.-+- +|++++ +.+|-|+|.. --.++|+-++-|-+||++++.
T Consensus 513 h-nPva~~SLClLtQnY------qhA~~liq~fa~~eitvd~L~elDKLVqLiEsPIFtylRLqLLe 572 (675)
T KOG0212|consen 513 H-NPVATLSLCLLTQNY------QHAYDLIQLFADVEITVDFLVELDKLVQLIESPIFTYLRLQLLE 572 (675)
T ss_pred C-CcHHHHHHHHHHHHH------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 1 11111111 122222 2355555542 234688899999999999884
No 14
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=73.23 E-value=20 Score=40.97 Aligned_cols=156 Identities=19% Similarity=0.331 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHh-hcc-----CCCc-hhHH-HHHHHHHHHHH
Q 004631 210 SYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHF-WGT-----GGGA-LPVV-AFLFLRDLCIR 281 (741)
Q Consensus 210 syl~sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~l-Wst-----~~~~-vrv~-AFl~Lr~l~~~ 281 (741)
.|..-.++||+++...+.+.++|.-+..++.=-...-.+.+.+--..-+. |.. +.+. .-+. +|-+|-.++ .
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la-~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA-C 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH-H
Confidence 67888899999998888888888766655432222222222221111111 221 1222 2233 454555443 3
Q ss_pred cCCcchhHHHHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhcee
Q 004631 282 LGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKV 361 (741)
Q Consensus 282 ~~~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~V 361 (741)
++...++..-...|..|+...=. +.++...|+|+.+|+-.|+-++ .|++||+-+----..+|.-. .++-+||-
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~-~~~~~~~~~~~~rcLQ~ll~~~---eyR~~~v~adg~~~l~~~l~--s~~~~~Ql- 216 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQ-SSTNNDYIQFAARCLQTLLRVD---EYRYAFVIADGVSLLIRILA--STKCGFQL- 216 (442)
T ss_pred hccccccchHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHhcCc---chhheeeecCcchhhHHHHh--ccCcchhH-
Confidence 55566666666788888885321 1455678999999999999998 59999986221111112111 34556654
Q ss_pred cchhhHHHHHHHHHH
Q 004631 362 YEWKFINCLELWTGA 376 (741)
Q Consensus 362 YNWQfv~sL~lWs~V 376 (741)
||-.++=+|.--
T Consensus 217 ---QYqsifciWlLt 228 (442)
T KOG2759|consen 217 ---QYQSIFCIWLLT 228 (442)
T ss_pred ---HHHHHHHHHHhh
Confidence 566666677644
No 15
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.94 E-value=82 Score=38.05 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCc--H------HHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 004631 209 KSYLGNSLHVLNQMTD--T------EMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCI 280 (741)
Q Consensus 209 Ksyl~sll~LL~~ltd--~------~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~ 280 (741)
++|+..+..++.+... + .+..-++..|...+|+| .+.-++++.++.+-+.....++.++-.+++.++.
T Consensus 278 k~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHF----N~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~ 353 (704)
T KOG2153|consen 278 KSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHF----NLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFE 353 (704)
T ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhc----cHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhc
Confidence 5667777777766621 1 12233333444455555 4555566667777766666688888888888766
Q ss_pred H
Q 004631 281 R 281 (741)
Q Consensus 281 ~ 281 (741)
.
T Consensus 354 ~ 354 (704)
T KOG2153|consen 354 N 354 (704)
T ss_pred C
Confidence 3
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=66.28 E-value=3.7e+02 Score=34.29 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=56.1
Q ss_pred HhhcCccccchHHHHHHhhc------cc--ccCCCCCCCCCccccchhhccCccccccHHHHHHHHHHHHHHHHHHHHHh
Q 004631 424 AASTGTFIPVSMLLLDMLEM------KE--LNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQW 495 (741)
Q Consensus 424 s~~Tg~FIPl~p~LleiL~s------~~--~~kk~k~~~~kplDf~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~ 495 (741)
++..+++|.|+..++++=+. .+ +++ ..+.-+-..+. +|.---|+.+.+.++.+-+.-.+...
T Consensus 677 ~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk-----f~~~~~~~vl~-----~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 677 SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK-----FYKKNRSEVLH-----YLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH-----hcccCCHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34567888888888876432 11 111 11122223333 33333444445555544333333322
Q ss_pred hcCcccccchhhHHHHHHhHhhhcc--hHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC
Q 004631 496 SYSVAFFELSFIPSVRLRDFCKSTK--VERFRKEMRQLIRQVDANSEFTNERRMSITF 551 (741)
Q Consensus 496 S~sIAFPEL~~Pii~~LKrf~K~~k--v~~~~k~lK~Li~kIeens~~I~~kR~~v~f 551 (741)
-.. |=+-+-+...+++...+.. .......+...+..++.-.+.-+..+..-++
T Consensus 747 p~~---~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 747 PSN---TSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred Ccc---chHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 111 1133444455666654332 2355666777777777777766666554433
No 17
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=63.22 E-value=62 Score=39.50 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHhhhcCcHHHHHHH--HHHhhhcce-eeeec
Q 004631 169 LSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFT--LRRLKFSSL-FLAAF 245 (741)
Q Consensus 169 L~~lp~~l~~lL~~~~~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~LL~~ltd~~~l~~v--L~~l~~l~p-~l~~f 245 (741)
=+|+|+.+++.|+-...+ ..-.+++.-+++ +|+.|+|+.+...+ |..|-...+ |.+ -
T Consensus 296 sKYvPPslRkkl~~~~~s------------E~l~rl~rkv~g-------~LNKLSdaNi~~I~~~i~~Ly~~~sr~~v-~ 355 (822)
T KOG2141|consen 296 SKYVPPSLRKKLETSSES------------EQLQRLRRKVNG-------SLNKLSDANIIKIIAGIAELYMNNSRYDV-T 355 (822)
T ss_pred cccCCHHHHHHhcCccch------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcchhhH-H
Confidence 389999999988733211 111233333333 34555555443322 222222222 333 3
Q ss_pred hhhHHHHHHHHHHhhccCCCchh---HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh
Q 004631 246 PSLLRKYVKAALHFWGTGGGALP---VVAFLFLRDLCIRLGSDCLDDCFKGIYKAYIL 300 (741)
Q Consensus 246 ~kl~k~~LK~lv~lWst~~~~vr---v~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~ 300 (741)
..+++-++++++...+.-++.+. .+|..+-+-+....+.+|++ |+--.+..|++
T Consensus 356 ~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~~~vg~eigahf~q-~~ve~f~~~~~ 412 (822)
T KOG2141|consen 356 SSLTKLLLKALLGPFRLLDSLLTTYAALAAMLHTMVGNEIGAHFLQ-TFVEDFLKSYK 412 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHH
Confidence 36778888888887777665522 22222333333344555555 33334444444
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=62.09 E-value=58 Score=37.25 Aligned_cols=70 Identities=11% Similarity=0.089 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHH
Q 004631 223 TDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKA 297 (741)
Q Consensus 223 td~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~a 297 (741)
+|+.+...+|+.+..+. .+.+...++..+..+-+.....||-.|.+++.++....+..+-..++..++..
T Consensus 91 ~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~l 160 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQL 160 (526)
T ss_dssp SSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHH
T ss_pred CCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh
Confidence 35667888888887755 77888889999999988777679999999999999886654322234444433
No 19
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=57.92 E-value=5.5 Score=46.39 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=25.7
Q ss_pred ccccchHHHH--HHhhcccccCCC-CCCCCCccccchhhccCccc
Q 004631 429 TFIPVSMLLL--DMLEMKELNRPP-SGGVGKAVDLRTVLKVSKPT 470 (741)
Q Consensus 429 ~FIPl~p~Ll--eiL~s~~~~kk~-k~~~~kplDf~~~LKvsks~ 470 (741)
.|||=.|+++ +=+.+..|.|.- .+++.+-|||...||-+.+|
T Consensus 362 lFl~KP~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~lk~g~~~ 406 (615)
T KOG0526|consen 362 LFLPKPPLYIRFEEISSVNFSRSGLSGTSTRTFDFEITLKSGTSY 406 (615)
T ss_pred EeecCCceEeeccceeeEEEEeccCCccceeeEEEEEEEcCCCee
Confidence 4555544433 334566777653 45677788888887766554
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=56.14 E-value=1.6e+02 Score=33.70 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=73.5
Q ss_pred chhhHHH-HHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhccccCccchhhHHHHHHHHHHH
Q 004631 245 FPSLLRK-YVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVEL 323 (741)
Q Consensus 245 f~kl~k~-~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL 323 (741)
+|.+... ++..+..+-...+..|+.+|..++..+ ..+......++...|..+.+-... +..| ++-.++.+
T Consensus 145 ~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~--~~~~-----~q~~il~~ 215 (526)
T PF01602_consen 145 DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSD--PDPW-----LQIKILRL 215 (526)
T ss_dssp CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTC--CSHH-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccc--cchH-----HHHHHHHH
Confidence 5666666 688888888655555888888888887 222221113444444433332222 2222 23333444
Q ss_pred hCCCccchhHHH--HHHHHHHHHHHHHHhhhccchhhceecchhhHHHHHHHHHHHhccCCCCC-CccchhhHHHHHHhh
Q 004631 324 LGVDLPSAYQHA--FVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEAD-MKPLAYPLTQIISGV 400 (741)
Q Consensus 324 ~~ld~~~aYq~A--F~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~~~~s~-L~pLiYPLvQIi~G~ 400 (741)
++.-.......+ ..+|..+.-.|+++-..=.-++.+.++.| .+... ++..+-||++.
T Consensus 216 l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l----------------~~~~~~~~~~~~~L~~l---- 275 (526)
T PF01602_consen 216 LRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL----------------SPSPELLQKAINPLIKL---- 275 (526)
T ss_dssp HTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------SSSHHHHHHHHHHHHHH----
T ss_pred HHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh----------------hcchHHHHhhHHHHHHH----
Confidence 433223333333 56666666666643322112222222211 11111 22223333322
Q ss_pred hhcccCccccchhhHHHHHHHHHHhhc
Q 004631 401 ARLVPTARYFPLRLRCVRMLNRIAAST 427 (741)
Q Consensus 401 irLiPt~ry~PLR~h~ir~L~~Ls~~T 427 (741)
+. ..-..+|+-.++.|..|++..
T Consensus 276 L~----s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 276 LS----SSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HT----SSSHHHHHHHHHHHHHHCCHC
T ss_pred hh----cccchhehhHHHHHHHhhccc
Confidence 22 333447888889999998876
No 21
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=55.84 E-value=42 Score=30.76 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhccccCcc
Q 004631 245 FPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAV 308 (741)
Q Consensus 245 f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~ 308 (741)
.......+++-++...+..+..||..|+-.|.+++...+...+. .+-.+|-+..+-+.-++++
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDEN 83 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchh
Confidence 56778888999999988887779999999999999998877766 7778888888876666544
No 22
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.77 E-value=2.2e+02 Score=36.78 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHhhhcceeeeechh-hHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCC
Q 004631 206 HLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPS-LLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGS 284 (741)
Q Consensus 206 ~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~k-l~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~ 284 (741)
|.+.+-..=.+.+++..-.+...+-+++.|.=+-..+.+||. +.+.+...++.+.+..+.-++..+|.|+..+....+.
T Consensus 178 pA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~ 257 (1176)
T KOG1248|consen 178 PASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPT 257 (1176)
T ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCC
Confidence 334444445556665555566666666666554444555764 6788888889988887777999999999999987766
Q ss_pred cchhHHHHHHHHHHHhhccccCccchhhHHHHH--HHHHHHh-CCCccchhHHHHHH-----------HHHHHHHHHHHh
Q 004631 285 DCLDDCFKGIYKAYILNCHFINAVKLQHIQFLS--NCVVELL-GVDLPSAYQHAFVF-----------IRQLAMILRDAF 350 (741)
Q Consensus 285 ~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~--N~~vEL~-~ld~~~aYq~AF~Y-----------IRQLAihLRna~ 350 (741)
.+...+-.+-++-+...+......++.+-+|+ |-..-.| .++...+-|+++.. ++|++.-.++++
T Consensus 258 -~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l 336 (1176)
T KOG1248|consen 258 -ALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSL 336 (1176)
T ss_pred -cchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 67766666666777777777777777766652 3333333 56777777766543 578888888888
Q ss_pred hhccchhhc-----------eecchhhHHHHHHHHHHHhccC
Q 004631 351 NVKTKEAFR-----------KVYEWKFINCLELWTGAVCAYC 381 (741)
Q Consensus 351 ~~ktKe~~k-----------~VYNWQfv~sL~lWs~VLs~~~ 381 (741)
+.=-+++.+ ...+-.|-+|-++--+++++.+
T Consensus 337 ~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~f 378 (1176)
T KOG1248|consen 337 KEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALF 378 (1176)
T ss_pred HHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 754444333 3344456666666666666544
No 23
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=51.92 E-value=6.8 Score=48.50 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHHHhhhcCcHHHHHHHHH-Hhhhcceeeeech-hhHHHHHHHHHHhhccCCCchhHH
Q 004631 212 LGNSLHVLNQMTDTEMISFTLR-RLKFSSLFLAAFP-SLLRKYVKAALHFWGTGGGALPVV 270 (741)
Q Consensus 212 l~sll~LL~~ltd~~~l~~vL~-~l~~l~p~l~~f~-kl~k~~LK~lv~lWst~~~~vrv~ 270 (741)
+.-.+.+....+.-+|++++-. ||+ -..|+-++. ...+..|+-+..|..+.-.-|.|.
T Consensus 185 MrK~i~~~~t~~plqI~Sv~a~D~lk-GyIYIEA~KqshV~~Ai~gv~niy~~~~~lVPik 244 (1024)
T KOG1999|consen 185 MRKFIELDKTDTPLQIKSVFAKDHLK-GYIYIEADKQSHVKEAIEGVRNIYANRILLVPIK 244 (1024)
T ss_pred HHHHHhhcccCCCceEEEEEeccccc-eeEEEEechhHHHHHHHhhhhhheeccEEEEehh
Confidence 3333444444444445443333 332 334555553 456677777777776632224443
No 24
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=51.40 E-value=7.3e+02 Score=33.42 Aligned_cols=235 Identities=13% Similarity=0.127 Sum_probs=120.1
Q ss_pred ceeeeechhhHHHHHHHHHHhhccCCCc--hhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhcccc--CccchhhHH
Q 004631 239 SLFLAAFPSLLRKYVKAALHFWGTGGGA--LPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFI--NAVKLQHIQ 314 (741)
Q Consensus 239 ~p~l~~f~kl~k~~LK~lv~lWst~~~~--vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~k~~--n~~tl~~In 314 (741)
.|=.-+-..++..+.+.+|+..+....+ +|++|-=.|-.|+.++.......-|-. ..-=++.... +++..+ +.
T Consensus 616 ~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~IaarLrkd~v~s~l~~--g~v~~~~~~~s~~~~~~k-~~ 692 (1692)
T KOG1020|consen 616 LPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAARLRKDAVLSKLEQ--GSVDRELDQDSEEKHNIK-LI 692 (1692)
T ss_pred CCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhhhhhcccccccch-hh
Confidence 4655666778888899999999865433 899988877777776543332221111 0000111111 222222 34
Q ss_pred HHHHHHHHHhCCCc-cchhHHHHH-------HHHHHHHHHHHHhhhcc-chhhceecchhhHHHHHHHHHHHhccCCCCC
Q 004631 315 FLSNCVVELLGVDL-PSAYQHAFV-------FIRQLAMILRDAFNVKT-KEAFRKVYEWKFINCLELWTGAVCAYCSEAD 385 (741)
Q Consensus 315 fM~N~~vEL~~ld~-~~aYq~AF~-------YIRQLAihLRna~~~kt-Ke~~k~VYNWQfv~sL~lWs~VLs~~~~~s~ 385 (741)
+.++.+...+.... ..+|...|. +-|.++.-.+.+|..++ -++=..++-| ..+.+|-+-+.+..+ .
T Consensus 693 ~l~~~Lldfl~~~~~~~~~~~v~~~~fyi~~w~~d~~le~~~~~~~~kd~~s~~~~~~~---~~~el~~~~v~~~~n--~ 767 (1692)
T KOG1020|consen 693 VLQKTLLDFLKSNTEETALSEVYACHFYIAQWYRDTRLETILIMEENKDVDSNEGTHHW---FSFELAYEKVITVEN--E 767 (1692)
T ss_pred hhHHHHHHHHHHhhhccchhhHHHhhHHHHhHHHHHHHHHHHHHHhccCccccccchhH---HHHHHHHHHHhhhHH--H
Confidence 55666666654322 344444332 22444555555555433 3333444445 456778887776322 1
Q ss_pred CccchhhHHHHHHhhhhccc--------Cccccc--hhhHHHHHHHHHHhhcCccccchHHHHHHhhcccccCCCCCCCC
Q 004631 386 MKPLAYPLTQIISGVARLVP--------TARYFP--LRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVG 455 (741)
Q Consensus 386 L~pLiYPLvQIi~G~irLiP--------t~ry~P--LR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~s~~~~kk~k~~~~ 455 (741)
+ ++++..|+=.+ +.+|.- =-.++.+.|..-+.=+..|=|.+.+|+-+|......=+.| .+
T Consensus 768 ~--------K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtk--Al 837 (1692)
T KOG1020|consen 768 L--------KYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTK--AL 837 (1692)
T ss_pred H--------HHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHH--HH
Confidence 1 12222222111 112211 1244555666655566777788888888887543322211 11
Q ss_pred CccccchhhccCccccccHHHHHH-----------HHHHHHHHHHHHHH
Q 004631 456 KAVDLRTVLKVSKPTLKTRAFQEA-----------CVYSVVEELAEHLA 493 (741)
Q Consensus 456 kplDf~~~LKvsks~L~t~~yqd~-----------vie~~~eLL~eyla 493 (741)
|. +..+..+++..|..+..|.+ |-+.+++|++.|..
T Consensus 838 Kc--lS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 838 KC--LSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HH--HHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 11 22334455555555666554 34567888887755
No 25
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.40 E-value=1.3e+02 Score=37.49 Aligned_cols=182 Identities=15% Similarity=0.247 Sum_probs=112.0
Q ss_pred cceeeeechhh-----HHHHHHHHHHhhccCCCchh-HHHHHHHHHHHHHcC-----------CcchhHHHHHHHHHHHh
Q 004631 238 SSLFLAAFPSL-----LRKYVKAALHFWGTGGGALP-VVAFLFLRDLCIRLG-----------SDCLDDCFKGIYKAYIL 300 (741)
Q Consensus 238 l~p~l~~f~kl-----~k~~LK~lv~lWst~~~~vr-v~AFl~Lr~l~~~~~-----------~~~le~~LK~~Y~ayv~ 300 (741)
.+-|+..||+. +-.++..+++...+....|- -+|...=+-+..+-+ .++.+..|...+.++=.
T Consensus 480 aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~ 559 (960)
T KOG1992|consen 480 AIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL 559 (960)
T ss_pred ccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC
Confidence 45577778764 45567778888777665543 344333222222211 24556667777643322
Q ss_pred hccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecchhhHHHHH-HHHHHHhc
Q 004631 301 NCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLE-LWTGAVCA 379 (741)
Q Consensus 301 n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL~-lWs~VLs~ 379 (741)
|.. ..=.|...|+--++++++.++-.||=.-||||+..+-..-+ +.-|-||-|-|- --+-+|-.
T Consensus 560 ------p~~-~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~K--------NPs~P~fnHYLFEsi~~li~~ 624 (960)
T KOG1992|consen 560 ------PGK-AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSK--------NPSNPQFNHYLFESIGLLIRK 624 (960)
T ss_pred ------Ccc-cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhc--------CCCCchhHHHHHHHHHHHHHH
Confidence 222 22347778888999999999999999999999888765544 444566766552 22333333
Q ss_pred cCCC-----CCCccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHHHhh--cCccccchHHHH
Q 004631 380 YCSE-----ADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAAS--TGTFIPVSMLLL 438 (741)
Q Consensus 380 ~~~~-----s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~Ls~~--Tg~FIPl~p~Ll 438 (741)
.|.. +.+-.=+.|+.|.|+.= -=--|+|.-|+++-.|+..+.. ..-|.|++|+|+
T Consensus 625 t~~~~~~~vs~~e~aL~p~fq~Il~e----DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 625 TCKANPSAVSSLEEALFPVFQTILSE----DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HhccCchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 3431 23555567777877521 1146899999999999888766 235666666665
No 26
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=46.47 E-value=4.9e+02 Score=29.57 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHhhccCCC-chhHHHH--HHHHHHHHHcCCcchhHHHHHHHHHHHhhccccCcc--c----hhhHHHHHH
Q 004631 248 LLRKYVKAALHFWGTGGG-ALPVVAF--LFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAV--K----LQHIQFLSN 318 (741)
Q Consensus 248 l~k~~LK~lv~lWst~~~-~vrv~AF--l~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~--t----l~~InfM~N 318 (741)
+...+++.++.....+.+ .-++.+- -+++-+++..+..-.+.++..+|..|+....+.... . ...-+.+.=
T Consensus 91 lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHH
Confidence 555566666666655554 2333322 346677777888888889999999999333322111 0 012222222
Q ss_pred HHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecchhhHHHHHHHHHHHhccCCCCCCccchhhHHHHHH
Q 004631 319 CVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIIS 398 (741)
Q Consensus 319 ~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~ 398 (741)
+..=|.++++++.......++++|.....+ .. ..+....++.+-+.++-++++++.+...+-.+.+.+.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~---~~--------~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~ 239 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALS---SE--------DEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS 239 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHc---CC--------ChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc
Confidence 334456899988877677777777443322 11 1677788888888888886655544443333333330
Q ss_pred hhhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHHHHhhcccccCCCCCC-CCCccccchhhccCccccccHHHH
Q 004631 399 GVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGG-VGKAVDLRTVLKVSKPTLKTRAFQ 477 (741)
Q Consensus 399 G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~s~~~~kk~k~~-~~kplDf~~~LKvsks~L~t~~yq 477 (741)
+.-.--...+-+-+-+|+.+.|+- +.......+...|+++|.+.++.....++ ..=--|.+..+.-.....--.-|+
T Consensus 240 ~~~~~~~~~~~~~~~~Wi~KaLv~--R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLyk 317 (415)
T PF12460_consen 240 SSEDSELRPQALEILIWITKALVM--RGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYK 317 (415)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHh
Confidence 000111233455555667776653 45566777778888888774432211000 000111122221112222234577
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHhHhhhcchHHHHHHHHHHHHH
Q 004631 478 EACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQ 534 (741)
Q Consensus 478 d~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K~~kv~~~~k~lK~Li~k 534 (741)
..++.+++-.|.+.+...... .-...+..|-..++.+...-+...+..|+--
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~-----~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPL 369 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDE-----IKSNYLTALSHLLKNVPKSVLLPELPTLLPL 369 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChh-----hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 788888777776665543322 2223344455555555544444454444433
No 27
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=45.11 E-value=11 Score=43.06 Aligned_cols=17 Identities=6% Similarity=0.259 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhccCC
Q 004631 248 LLRKYVKAALHFWGTGG 264 (741)
Q Consensus 248 l~k~~LK~lv~lWst~~ 264 (741)
.|+.==+.+|.+|+..+
T Consensus 200 yck~NPRKMVk~WAEKE 216 (520)
T KOG2270|consen 200 YCKHNPRKMVKTWAEKE 216 (520)
T ss_pred cccCCcHHHHHHHHHHH
Confidence 55555567888897655
No 28
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=44.73 E-value=3.6e+02 Score=28.23 Aligned_cols=175 Identities=18% Similarity=0.344 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccEEEcChHHHHHHHHHHHHHHHHHHHHhcCCCCC---------CCCccccccccc
Q 004631 127 AVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSS---------GGKKETITDLMH 197 (741)
Q Consensus 127 alr~lv~AFRaA~~~~~~~~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~lL~~~~~---------~gkk~~~~~l~~ 197 (741)
++..+...||.-|.-+.+ +.+.|.+++.- +..++..|..++.+..- .|....+
T Consensus 8 ~~~~~~~~~~~kC~~~~g------------~~~~~~~i~~a-~~~~~~C~~~~vd~~~l~~eie~~~p~g~ld~v----- 69 (213)
T PF07165_consen 8 SLEEIKKMLREKCKKNGG------------SDAAYEEIEEA-AQQLPECLSGLVDLTQLQQEIEEAKPTGDLDEV----- 69 (213)
T ss_pred hHHHHHHHHHHHHHHhcC------------ChHHHHHHHHH-HHHHHHHHHhccCHHHHHHHHHHcCccccHHHH-----
Confidence 788899999999974442 11356665544 44588888888776531 2222221
Q ss_pred ccchhhhHH---HHHHHHHHHHHHh-hhcCcHH--HHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHH
Q 004631 198 TKQWKKYNH---LVKSYLGNSLHVL-NQMTDTE--MISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVA 271 (741)
Q Consensus 198 ~~~wkkl~~---liKsyl~sll~LL-~~ltd~~--~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~A 271 (741)
++||=+ -++..+......| .++++.+ +. .....++..++.+-...++ -||+.
T Consensus 70 ---F~KyC~k~~~~~~C~~~f~~~v~~Cl~~ee~~~~------------------~~~~~i~~~ll~fvC~k~G-d~Ial 127 (213)
T PF07165_consen 70 ---FNKYCPKRPQAKECFDPFTEKVKPCLDEEEKEIL------------------DVMMNIIPSLLDFVCYKDG-DRIAL 127 (213)
T ss_pred ---HHHHhHhhHHHHHHHHHHHhhcccCCCHHHHHHH------------------HHHHHHHHHHHHHHHcCCc-hhhHh
Confidence 233322 1222222222222 2233221 22 2333444444444444333 34444
Q ss_pred HHHH-HHHHHHcCCcchhHHHHHHHHHHHhhccccCccchhh--------HHHHHHHHHHHhCC--C--ccchhHHHHHH
Q 004631 272 FLFL-RDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQH--------IQFLSNCVVELLGV--D--LPSAYQHAFVF 338 (741)
Q Consensus 272 Fl~L-r~l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~tl~~--------InfM~N~~vEL~~l--d--~~~aYq~AF~Y 338 (741)
|..- -.-|..-....+..|+-+++..| ......+..++|. +.=+++|+++=+.- + +...+..-|.|
T Consensus 128 f~~~~g~eC~~~~~~~i~~C~~~~~~~~-~~~~~s~~~~~p~~~~~qC~~l~~~~~Cvv~~Le~C~~~tpani~~~~f~~ 206 (213)
T PF07165_consen 128 FIAEGGPECFESLKDNIQQCANKTFSGY-SDMNISKLMSIPKFGEKQCSDLDNLRSCVVEKLEKCSDPTPANIFDSFFRF 206 (213)
T ss_pred hcccCcHHHHHHhhHHHHHHHHHHHhhc-cccccccccccCcCChHhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 4310 01111112455667888888888 2222222234444 66689999977642 3 33458889999
Q ss_pred HHHH
Q 004631 339 IRQL 342 (741)
Q Consensus 339 IRQL 342 (741)
||..
T Consensus 207 i~k~ 210 (213)
T PF07165_consen 207 IRKE 210 (213)
T ss_pred HHhc
Confidence 9863
No 29
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=44.04 E-value=1.1e+02 Score=31.30 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHhhh---cceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHH
Q 004631 202 KKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKF---SSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDL 278 (741)
Q Consensus 202 kkl~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~---l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l 278 (741)
.++...|+.-=..+++.|..=++..++..+|+-+.. ..||=-.-+.+...+++.+-.+....+..++++++.|+.-+
T Consensus 93 ~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l 172 (182)
T PF13251_consen 93 STLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGAL 172 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 456778888888888888888888888888876655 55887777888888888888889888888999999999876
Q ss_pred HHH
Q 004631 279 CIR 281 (741)
Q Consensus 279 ~~~ 281 (741)
...
T Consensus 173 ~s~ 175 (182)
T PF13251_consen 173 LSV 175 (182)
T ss_pred HcC
Confidence 543
No 30
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=41.62 E-value=9.6 Score=46.91 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 004631 127 AVRSLMKAFR 136 (741)
Q Consensus 127 alr~lv~AFR 136 (741)
.-+..+..||
T Consensus 764 ~~~~~~~~Fk 773 (784)
T PF04931_consen 764 EAKENVIHFK 773 (784)
T ss_pred HHHHHHHHHH
Confidence 3334444454
No 31
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=40.42 E-value=9.3 Score=34.24 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 004631 692 SASDVFSSDKD 702 (741)
Q Consensus 692 ~~~~~~~~~~~ 702 (741)
+...||.-+++
T Consensus 49 eee~m~rK~k~ 59 (81)
T PF14812_consen 49 EEEPMPRKGKK 59 (81)
T ss_dssp -----------
T ss_pred hcccccccccc
Confidence 44456655554
No 32
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=39.49 E-value=3.3e+02 Score=26.53 Aligned_cols=120 Identities=10% Similarity=0.047 Sum_probs=64.0
Q ss_pred HHHhhhcCcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHH
Q 004631 216 LHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIY 295 (741)
Q Consensus 216 l~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y 295 (741)
-.+++.+|. +.+..+...+..+. ..-+.....+++.++..|-.-..-+.. |..|-.........+...++..++
T Consensus 5 ~~~lnkLs~-~n~~~~~~~l~~~~---~~~~~~~~~l~~~i~~~~~~~~~~~~~--ya~L~~~l~~~~~~f~~~ll~~~~ 78 (200)
T smart00543 5 KGLINKLSP-SNFESIIKELLKLN---NSDKNLRKYILELIFEKAVEEPNFIPA--YARLCALLNAKNPDFGSLLLERLQ 78 (200)
T ss_pred HHHHhhCCH-HHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667763 44444444444322 223678888889998888765533332 222222222222356666777777
Q ss_pred HHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHH
Q 004631 296 KAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQL 342 (741)
Q Consensus 296 ~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQL 342 (741)
..|-..........+....-..+.++|||....-.. ...|..|++|
T Consensus 79 ~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~i~~-~~i~~~l~~l 124 (200)
T smart00543 79 EEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTS-KIILELLKEL 124 (200)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHHHHHcccCcH-HHHHHHHHHH
Confidence 777654322222233334444556888886543322 2466666666
No 33
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=39.48 E-value=1.5e+02 Score=29.40 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=58.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHhhhcceeeeechhhHHHH--------HHHHHHhhccCCCchhHHHH
Q 004631 201 WKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKY--------VKAALHFWGTGGGALPVVAF 272 (741)
Q Consensus 201 wkkl~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~--------LK~lv~lWst~~~~vrv~AF 272 (741)
|..+...-..++..++.+|++-....+...++..+..++.+...+|.+.|++ +..++.+-.. ..+...+.
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l 135 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETAL 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHH
Confidence 6666667788899999999997788889999999999999999999999875 3334443322 23444444
Q ss_pred HHHHHHHHHcCCc
Q 004631 273 LFLRDLCIRLGSD 285 (741)
Q Consensus 273 l~Lr~l~~~~~~~ 285 (741)
-+|..+...+++.
T Consensus 136 ~~L~~ll~~~ptt 148 (165)
T PF08167_consen 136 DALATLLPHHPTT 148 (165)
T ss_pred HHHHHHHHHCCcc
Confidence 4555555554443
No 34
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=39.44 E-value=20 Score=38.56 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=2.8
Q ss_pred hHHHHhh
Q 004631 51 PEFFKFL 57 (741)
Q Consensus 51 PEFykyL 57 (741)
++|++++
T Consensus 250 ~~y~~~~ 256 (314)
T PF06524_consen 250 GSYWKNG 256 (314)
T ss_pred cchhccc
Confidence 3444443
No 35
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=37.59 E-value=9.9 Score=43.57 Aligned_cols=59 Identities=34% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCccccccccCcccCcchhhhccCCCCCcccchhHHHHHHHHHHHHhhcChHHHHhhhhhhhhhccCCCCCCcccccccc
Q 004631 1 MGAKNKARNLDHEICDDEMEEQDETSRPVSKSKKVAKEHKEQLQRLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVETDM 80 (741)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hk~~L~~LkekDPEFykyLqEnD~~LL~F~~~d~~dded~~~ 80 (741)
|--.|.+++|-.|+.+|..+|++++ ++|-+-.++++++++++||+++
T Consensus 32 lkKE~~IRkLgeEaEEEA~~EEded---------------------------------edd~~d~DddD~d~ddddddeD 78 (458)
T PF10446_consen 32 LKKENAIRKLGEEAEEEAEEEEDED---------------------------------EDDEDDDDDDDEDDDDDDDDED 78 (458)
T ss_pred HHHHHHHhhhhHHHHHHHhhccccc---------------------------------cccccccccccccccccccccc
Q ss_pred cccccccccCCC
Q 004631 81 EDAEMQEDEDVG 92 (741)
Q Consensus 81 ed~e~~~~~~~~ 92 (741)
+++++..+++..
T Consensus 79 e~~De~dD~d~~ 90 (458)
T PF10446_consen 79 EDDDEEDDDDST 90 (458)
T ss_pred cccccccccccc
No 36
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.99 E-value=9.9e+02 Score=30.09 Aligned_cols=334 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHHH-------HHHHHHHHHHHhcCCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHhhhcCcHHHHHH
Q 004631 158 SSVFNKIMLF-------VLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISF 230 (741)
Q Consensus 158 s~VFn~vv~~-------~L~~lp~~l~~lL~~~~~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~LL~~ltd~~~l~~ 230 (741)
|..+..|+.| .|+.+--.+.-++|--.+.|+-..-+-|.-..--+-+++.--.-=++++.+|-.+.+++++.-
T Consensus 55 p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlep 134 (948)
T KOG1058|consen 55 PSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEP 134 (948)
T ss_pred hHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhh
Q ss_pred HHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh----hccccC
Q 004631 231 TLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYIL----NCHFIN 306 (741)
Q Consensus 231 vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~----n~k~~n 306 (741)
+...+++.+-+=.+| ||=-|+++|-.|-.. ....+-.+=--+|...++ +||
T Consensus 135 l~p~IracleHrhsY---------------------VRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCk--- 189 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSY---------------------VRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCK--- 189 (948)
T ss_pred hHHHHHHHHhCcchh---------------------hhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhH---
Q ss_pred ccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHHH---HHHHHHhhhccchhhceecc------hhhHHHHHHHHHHH
Q 004631 307 AVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLA---MILRDAFNVKTKEAFRKVYE------WKFINCLELWTGAV 377 (741)
Q Consensus 307 ~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQLA---ihLRna~~~ktKe~~k~VYN------WQfv~sL~lWs~VL 377 (741)
+|.++-|+.+|+.-|-..+-.-|-|.- -.|.-++. |-++.|++ -+||.||. ..|
T Consensus 190 ----------RNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViV----E~Irkv~~~~p~~~~~~i~~i~---~lL 252 (948)
T KOG1058|consen 190 ----------RNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIV----ELIRKVCLANPAEKARYIRCIY---NLL 252 (948)
T ss_pred ----------HHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHH----HHHHHHHhcCHHHhhHHHHHHH---HHH
Q ss_pred hccCCC------------CCCccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHHHHhhccc
Q 004631 378 CAYCSE------------ADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKE 445 (741)
Q Consensus 378 s~~~~~------------s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~s~~ 445 (741)
++..+. ++--.++-+-++-++..+-=.|--+-.-.-+-.+..|. +.+-+.+--+.-=+|.+|.+++
T Consensus 253 ~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~d 330 (948)
T KOG1058|consen 253 SSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPD 330 (948)
T ss_pred hcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCccc
Q ss_pred ccCCCCC-------CCCCccc-------cchhhccCccccccHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhhHHHH
Q 004631 446 LNRPPSG-------GVGKAVD-------LRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVR 511 (741)
Q Consensus 446 ~~kk~k~-------~~~kplD-------f~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~ 511 (741)
+.=+.|. .+..++. +...=......-.+..||..++. +++++.|-|||++.-++..
T Consensus 331 ldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLik----------tih~cav~Fp~~aatvV~~ 400 (948)
T KOG1058|consen 331 LDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIK----------TIHACAVKFPEVAATVVSL 400 (948)
T ss_pred ccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHH----------HHHHHhhcChHHHHHHHHH
Q ss_pred HHhHhhhcchH---HHHHHHHHHHHHHHHhHHHHHHh
Q 004631 512 LRDFCKSTKVE---RFRKEMRQLIRQVDANSEFTNER 545 (741)
Q Consensus 512 LKrf~K~~kv~---~~~k~lK~Li~kIeens~~I~~k 545 (741)
|=.|+-..... ....-++..+++.-.-..-|..+
T Consensus 401 ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~ 437 (948)
T KOG1058|consen 401 LLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEK 437 (948)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHH
No 37
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=34.86 E-value=29 Score=37.12 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=9.2
Q ss_pred hccCccccccHHHH
Q 004631 464 LKVSKPTLKTRAFQ 477 (741)
Q Consensus 464 LKvsks~L~t~~yq 477 (741)
+..-..|++++-|+
T Consensus 39 ~~~l~~y~~gKKy~ 52 (244)
T PF05477_consen 39 LDELQQYIRGKKYQ 52 (244)
T ss_pred HHHHHHHhccHHHH
Confidence 34445677777777
No 38
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.31 E-value=78 Score=30.42 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=47.3
Q ss_pred HHHHHhhhcCcHHHHHHHHHHhhhcceeeeechhhHHHH-HH-HHHHhhccCCCchhHHHHHHHHHHHH
Q 004631 214 NSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKY-VK-AALHFWGTGGGALPVVAFLFLRDLCI 280 (741)
Q Consensus 214 sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~-LK-~lv~lWst~~~~vrv~AFl~Lr~l~~ 280 (741)
.++.+|..-.|+.++++.+.-|..++.++-.-++++..+ .| .+..+-+..+..||--|-+++.++..
T Consensus 47 ~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 47 KLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455667555699999999999999998875555555433 23 45677777666699999999998764
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=34.18 E-value=1.1e+02 Score=32.76 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhhc-CcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 004631 205 NHLVKSYLGNSLHVLNQM-TDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCI 280 (741)
Q Consensus 205 ~~liKsyl~sll~LL~~l-td~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~ 280 (741)
+..|+.|+.-++..+..- -|+.+....|+-|.++..- -.+..+...++-.++++|++|...+|+.+--+|-+++.
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 456889988888765443 4778888888888887533 23356677789999999999988888777666666544
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=33.91 E-value=9.9e+02 Score=29.83 Aligned_cols=58 Identities=7% Similarity=0.045 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHhhhcceeeeechhhHHHH----HHHHHHhhccCCCchhHHHHHHHHHHHHHcC
Q 004631 223 TDTEMISFTLRRLKFSSLFLAAFPSLLRKY----VKAALHFWGTGGGALPVVAFLFLRDLCIRLG 283 (741)
Q Consensus 223 td~~~l~~vL~~l~~l~p~l~~f~kl~k~~----LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~ 283 (741)
+++.++--+++-+-.+.++. .+.+.+.+ -..++.| .+++..++.++.-.|+.++...+
T Consensus 268 ~N~AVVl~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 268 QNPAVVMGAIKVVANLASRC--SQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred CCHHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence 34545444444444444443 23444443 3455667 44455588777777777766554
No 41
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=33.71 E-value=2.9e+02 Score=33.86 Aligned_cols=202 Identities=18% Similarity=0.178 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHH----hhhcCcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHH
Q 004631 204 YNHLVKSYLGNSLHV----LNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLC 279 (741)
Q Consensus 204 l~~liKsyl~sll~L----L~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~ 279 (741)
++.-++.-|.-+..| |+.-.+++++..+|-++..++-|+-.-=-..-.++--++.-+-+. .++|+++.-||-.++
T Consensus 182 LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f~s~-pd~r~~tl~CLtEi~ 260 (1053)
T COG5101 182 LKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFNSM-PDTRVATLSCLTEIV 260 (1053)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 344445444444444 455578999999998876655443221112223333333333222 348889989998887
Q ss_pred HHcCCcchhHHHHHHHHHHHhhcccc-CccchhhHHHHHHHHHHHhC-CCccchhHHHHHHHHHHHHHHHHHhhhc----
Q 004631 280 IRLGSDCLDDCFKGIYKAYILNCHFI-NAVKLQHIQFLSNCVVELLG-VDLPSAYQHAFVFIRQLAMILRDAFNVK---- 353 (741)
Q Consensus 280 ~~~~~~~le~~LK~~Y~ayv~n~k~~-n~~tl~~InfM~N~~vEL~~-ld~~~aYq~AF~YIRQLAihLRna~~~k---- 353 (741)
.....+.-....+.+...+..+.-+. +...+ +...-+-|.|| .|.+ -=.||..||.-|-.-...-
T Consensus 261 ~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~----p~~~d~~e~Y~~~~~n-----eq~Fvq~LA~fL~s~~~~~~~lL 331 (1053)
T COG5101 261 DLGRHPQENAEKERILVIHFQCIEFLKMYSNK----PQEEDIYEVYGGMDKN-----EQIFVQKLAQFLSSLYEVYISLL 331 (1053)
T ss_pred hhccCcccchhhhhHHHHHHHHHHHHHHHhcc----chHHHHHHHHcccChh-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 75533322222223333322221110 00011 12233334442 2211 1123334443332222100
Q ss_pred --------cchhhce------e-cchhhHHHHHHHHHHHhccCCCCCCccc----hhhHHHHHHhhhhcc--cC-ccccc
Q 004631 354 --------TKEAFRK------V-YEWKFINCLELWTGAVCAYCSEADMKPL----AYPLTQIISGVARLV--PT-ARYFP 411 (741)
Q Consensus 354 --------tKe~~k~------V-YNWQfv~sL~lWs~VLs~~~~~s~L~pL----iYPLvQIi~G~irLi--Pt-~ry~P 411 (741)
.+.+..- | -.=-|-.||+.|..+++....+ ++.| .-||+|+..|+--+. |+ ..-+|
T Consensus 332 E~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E--~q~lp~tem~Pli~ls~~s~~istnpn~~~~~p 409 (1053)
T COG5101 332 EAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSE--FQRLPATEMSPLIQLSVGSQAISTNPNQDSTKP 409 (1053)
T ss_pred cChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHH--HHhCcccccCcchhccccchhccCCcchhcccc
Confidence 0000000 0 0112667999999999875432 2211 236778888775553 43 46689
Q ss_pred hhhHHH
Q 004631 412 LRLRCV 417 (741)
Q Consensus 412 LR~h~i 417 (741)
||=|+-
T Consensus 410 LrkhiY 415 (1053)
T COG5101 410 LRKHIY 415 (1053)
T ss_pred hHHHHH
Confidence 998863
No 42
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=32.18 E-value=28 Score=31.06 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=11.8
Q ss_pred HHHHhhhhhhhhhccCCCCCC
Q 004631 52 EFFKFLQEHDKELLEFDDDDI 72 (741)
Q Consensus 52 EFykyLqEnD~~LL~F~~~d~ 72 (741)
.+-.||+|||= |-.+|+
T Consensus 59 ~~A~fLEe~di----FvP~DD 75 (79)
T PF10161_consen 59 NGAQFLEENDI----FVPEDD 75 (79)
T ss_pred HHHHHHHHhcc----cCCCcC
Confidence 45679999985 656544
No 43
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=31.83 E-value=42 Score=41.45 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHh
Q 004631 204 YNHLVKSYLGNSLHVL 219 (741)
Q Consensus 204 l~~liKsyl~sll~LL 219 (741)
-+..+..|=.-+|.||
T Consensus 765 ~~~~~~~Fk~RvlDLl 780 (784)
T PF04931_consen 765 AKENVIHFKNRVLDLL 780 (784)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444455554
No 44
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=30.84 E-value=35 Score=40.11 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=9.5
Q ss_pred chhhhhhhcccCccc
Q 004631 664 EEDIVEDLVLSSDEE 678 (741)
Q Consensus 664 ~~d~v~d~~ls~~~~ 678 (741)
+|+.=||+..+++++
T Consensus 465 ~~e~Dedf~~~~~~d 479 (615)
T KOG0526|consen 465 DEEEDEDFKPGEEDD 479 (615)
T ss_pred chhhhhhcccCcccc
Confidence 345566777777654
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.63 E-value=2.8e+02 Score=34.49 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=103.5
Q ss_pred CcHHHHHHHHHHhhhcceeee-ech-hhHHHH-HHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHH-HHHHHHHH
Q 004631 223 TDTEMISFTLRRLKFSSLFLA-AFP-SLLRKY-VKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDC-FKGIYKAY 298 (741)
Q Consensus 223 td~~~l~~vL~~l~~l~p~l~-~f~-kl~k~~-LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~-LK~~Y~ay 298 (741)
|++.+--..++.|...+-|.- -|. -.-|.| +..++..|...+..++++||.||.+|...+ +.+++.- .+.+|.-+
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfait 264 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAIT 264 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555566666666666666544 221 233333 567889999988889999999999998765 3333322 23355555
Q ss_pred HhhccccC-ccchhhHHHHHHHHHHHh------------CCCccchhHHHHHHHHHHHHHH----HHHhhhccchhhcee
Q 004631 299 ILNCHFIN-AVKLQHIQFLSNCVVELL------------GVDLPSAYQHAFVFIRQLAMIL----RDAFNVKTKEAFRKV 361 (741)
Q Consensus 299 v~n~k~~n-~~tl~~InfM~N~~vEL~------------~ld~~~aYq~AF~YIRQLAihL----Rna~~~ktKe~~k~V 361 (741)
+..-|..+ ...+..|.|-.+-.-|=. +++| + .|.|-||-+.++ =+.++....+.+--.
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p-~----~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP-S----SKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-h----hhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 55555444 346888988775443322 2232 3 355666655554 444554443334333
Q ss_pred cchhhH----HHHHHHHHHHhccCCCCCCccchhhHHH---------------HHHhhhhcccC-ccccchhhHHHHHHH
Q 004631 362 YEWKFI----NCLELWTGAVCAYCSEADMKPLAYPLTQ---------------IISGVARLVPT-ARYFPLRLRCVRMLN 421 (741)
Q Consensus 362 YNWQfv----~sL~lWs~VLs~~~~~s~L~pLiYPLvQ---------------Ii~G~irLiPt-~ry~PLR~h~ir~L~ 421 (741)
|--. -||.+.+++.. ..+=|=|-|++. ++.|.|---|. .+--|+.-..+-.++
T Consensus 340 --Wnp~kAAg~CL~l~A~~~~-----D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 340 --WNPAKAAGVCLMLFAQCVG-----DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred --CcHHHHHHHHHHHHHHHhc-----ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 3322 35544444332 233444556554 34444444443 355555555555555
Q ss_pred HHHh
Q 004631 422 RIAA 425 (741)
Q Consensus 422 ~Ls~ 425 (741)
.+..
T Consensus 413 ~lm~ 416 (859)
T KOG1241|consen 413 NLMS 416 (859)
T ss_pred HHhc
Confidence 5443
No 46
>PHA02734 coat protein; Provisional
Probab=30.26 E-value=1.6e+02 Score=28.68 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHhHhhhcchHHHHHHHHHHHHHHHHhHHHHHHhhcC
Q 004631 477 QEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMS 548 (741)
Q Consensus 477 qd~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K~~kv~~~~k~lK~Li~kIeens~~I~~kR~~ 548 (741)
+..-...++.+|..|+ +.-|+|||+++-.. -....++.+-.++....++.+|..|++-.+=.+.+-.+
T Consensus 8 KgdYagg~~kiL~~F~---~G~iGyPevsLRLA-GEEAn~~~~G~e~~k~aIHeiIK~IreA~kp~rn~g~g 75 (149)
T PHA02734 8 KGDYAGGAAKILDGFE---AGQLGFPEVSLKLA-GEEANARKAGDANAKAAIHAIIKMIKDAMKPLRNKGKG 75 (149)
T ss_pred chhHHHHHHHHHHHHH---cCCCCCceeehhhh-hhHhhhcccChHHHHHHHHHHHHHHHHHhhhhhhcCCc
Confidence 3444556788898885 46799999985432 23344555666777888999999998887776655433
No 47
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=30.03 E-value=7.7e+02 Score=27.01 Aligned_cols=210 Identities=16% Similarity=0.069 Sum_probs=101.3
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHH
Q 004631 211 YLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDC 290 (741)
Q Consensus 211 yl~sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~ 290 (741)
-+..++-++..=++...+...+..+...+.++ -..+.+.+++.+..=.+.....+|-+-|.++..++...+..-....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 34455566666677777777776666655555 3455566666666655555555887777777776651111111222
Q ss_pred HHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHH----------HHHHHHHHHhhhccchhhc-
Q 004631 291 FKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIR----------QLAMILRDAFNVKTKEAFR- 359 (741)
Q Consensus 291 LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIR----------QLAihLRna~~~ktKe~~k- 359 (741)
...+.-.++...+.+..+.++.. ....+--||+++- + ......++....|.+|-
T Consensus 101 ~~~~~~~L~~~~~~~~~~p~~~~--------------~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~~l~~~~kps~ll 165 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASANPLQSA--------------QNGELVGAYVLLALSSWKLDKIDS-KNISFWSLALDPKPSFLL 165 (339)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcc--------------ccccHHHHHHHHHhccccchhhhh-hhhhhhhhccCCCcchhc
Confidence 22232333332222222222211 1111233444443 1 23333334333333321
Q ss_pred --eecch-----hhHHHHHHHHHHHhccCCCCCCccchhhHHHHHHhhhhcccCcc-ccchhhHHHHHHHHHHhhcCccc
Q 004631 360 --KVYEW-----KFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTAR-YFPLRLRCVRMLNRIAASTGTFI 431 (741)
Q Consensus 360 --~VYNW-----Qfv~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLiPt~r-y~PLR~h~ir~L~~Ls~~Tg~FI 431 (741)
.||+= -.+..+++-..++..+... ....-..|+-|.++.++- ++. =.+.|-+++..|-++......+
T Consensus 166 ~~kvyskl~~~~d~~w~~~al~~~~~~~~~~-~~~~~~~~~~~a~i~ll~---s~~~~~~vR~~A~~~l~~l~~~~~~~- 240 (339)
T PF12074_consen 166 SEKVYSKLASEEDLCWLLRALEALLSDHPSE-LSSDKSSAWAQAFIYLLC---SSNVSWKVRRAALSALKKLYASNPEL- 240 (339)
T ss_pred CHHHHhccCCHhHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHhChHH-
Confidence 11111 1222333334444433321 111113455555544332 221 4579999999999999888776
Q ss_pred cchHHHHHHhhc
Q 004631 432 PVSMLLLDMLEM 443 (741)
Q Consensus 432 Pl~p~LleiL~s 443 (741)
+...|++-|..
T Consensus 241 -l~~~li~~l~~ 251 (339)
T PF12074_consen 241 -LSKSLISGLWK 251 (339)
T ss_pred -HHHHHHHHHHH
Confidence 66666665543
No 48
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=29.02 E-value=5.6e+02 Score=32.94 Aligned_cols=272 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCCCCCCcccccccccccccccccCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCC
Q 004631 66 EFDDDDIDDDVETDMEDAEMQEDEDVGPDMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDA 145 (741)
Q Consensus 66 ~F~~~d~~dded~~~ed~e~~~~~~~~~~~~~~~~~~~~~~lT~~~v~~W~~~l~~~~s~~alr~lv~AFRaA~~~~~~~ 145 (741)
||+.+++||++.+..||+++++-+++ |.+|+
T Consensus 312 Ny~yd~~eDed~~~~ed~eDde~~de-------------------------------------------------YsDDe 342 (1233)
T KOG1824|consen 312 NYNYDTEEDEDAMFLEDEEDDEQDDE-------------------------------------------------YSDDE 342 (1233)
T ss_pred CCCCCCccchhhhhhhccccchhccc-------------------------------------------------ccccc
Q ss_pred CCCccccEEEcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHhhhcCcH
Q 004631 146 GEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDT 225 (741)
Q Consensus 146 ~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~lL~~~~~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~LL~~ltd~ 225 (741)
+ .+-+-+=...++-.++|..=...+|.+.+.+-|. .| .+|+-=..-+|.=..++..-|
T Consensus 343 D--~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~--------lI------~RfkEREEnVk~dvf~~yi~l------ 400 (1233)
T KOG1824|consen 343 D--MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPA--------LI------SRFKEREENVKADVFHAYIAL------ 400 (1233)
T ss_pred c--hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHH--------HH------HHHHHHhhhHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHhhhcceee---------------eechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHH
Q 004631 226 EMISFTLRRLKFSSLFL---------------AAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDC 290 (741)
Q Consensus 226 ~~l~~vL~~l~~l~p~l---------------~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~ 290 (741)
|++....++|+ .......-.++|++=+...+..-.+|+.+|+.|+.+...+|...-+..
T Consensus 401 ------l~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~ 474 (1233)
T KOG1824|consen 401 ------LKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHI 474 (1233)
T ss_pred ------HHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcc
Q ss_pred HHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecchhhHHHH
Q 004631 291 FKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCL 370 (741)
Q Consensus 291 LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL 370 (741)
. ..+|+|.+.-|-..-.-.+ =+..|
T Consensus 475 ~----------------slvpgI~~~l~DkSsss~~---------------------------------------ki~~L 499 (1233)
T KOG1824|consen 475 P----------------SLVPGIIYSLNDKSSSSNL---------------------------------------KIDAL 499 (1233)
T ss_pred c----------------ccchhhhhhcCCccchHHH---------------------------------------HHHHH
Q ss_pred HHHHHHHhccCCCCCCccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHHHHhhc---cccc
Q 004631 371 ELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEM---KELN 447 (741)
Q Consensus 371 ~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~s---~~~~ 447 (741)
-|-..+|..|+++ .++|.+-||+.+...++. +-|--|+.=.|-+... .--.
T Consensus 500 ~fl~~~L~s~~p~-~fhp~~~~Ls~~v~~aV~-------------------------d~fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 500 VFLYSALISHPPE-VFHPHLSALSPPVVAAVG-------------------------DPFYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred HHHHHHHhcCChh-hcccchhhhhhHHHHHhc-------------------------CchHhhhHHHHHHHHHHHHHhcc
Q ss_pred CCCCCCCCCccccchhhccCccccccHHHHHHHHHHHHHHHHHHHHHh
Q 004631 448 RPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQW 495 (741)
Q Consensus 448 kk~k~~~~kplDf~~~LKvsks~L~t~~yqd~vie~~~eLL~eyla~~ 495 (741)
..|..+..-+.++..++-+.-+-+.....-..|-+.++..++.+++.+
T Consensus 554 l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~f 601 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANF 601 (1233)
T ss_pred cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
No 49
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=28.89 E-value=4.2e+02 Score=30.94 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=76.7
Q ss_pred cchhHHHHHH--HHHHHHHHHHHhh-----hccchhhceecchhhHHHHHHHHHH--HhccCCCCCCccchhhHHHHHHh
Q 004631 329 PSAYQHAFVF--IRQLAMILRDAFN-----VKTKEAFRKVYEWKFINCLELWTGA--VCAYCSEADMKPLAYPLTQIISG 399 (741)
Q Consensus 329 ~~aYq~AF~Y--IRQLAihLRna~~-----~ktKe~~k~VYNWQfv~sL~lWs~V--Ls~~~~~s~L~pLiYPLvQIi~G 399 (741)
.++|++||.| ||+.|-.+|.-.+ .+|| ++++--+.||-+.=.=|-.. |.++|- -+|| |-|--
T Consensus 273 ~VTY~VGFayLmmrryadai~~F~niLlyIqrtk-s~~~~~~y~~d~inKq~eqm~~llai~l------~~yP--q~iDE 343 (525)
T KOG3677|consen 273 RVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTK-SMFSRTTYQYDMINKQNEQMHHLLAICL------SMYP--QMIDE 343 (525)
T ss_pred eEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhhhHhhhhhhHHHHHHHHHHHH------HhCc--hhhhH
Confidence 4679998888 6888888887554 3344 44455566665554444321 222231 1455 44432
Q ss_pred hhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHH---HHhhcccccCCCCCCCCCccccchhhc-cCcc--cccc
Q 004631 400 VARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLL---DMLEMKELNRPPSGGVGKAVDLRTVLK-VSKP--TLKT 473 (741)
Q Consensus 400 ~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~Ll---eiL~s~~~~kk~k~~~~kplDf~~~LK-vsks--~L~t 473 (741)
+ ++..|++. -++|.+|.-- +++.+.-+..-|+-.+.-+++.+..++ +++. .-+.
T Consensus 344 S------------------i~s~l~Ek--~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~ql 403 (525)
T KOG3677|consen 344 S------------------IHSQLAEK--YGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQL 403 (525)
T ss_pred H------------------HHHHHHHH--hcchhhhhhcCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHH
Confidence 2 23444444 5566555431 222221111112222222333333333 1221 1133
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhcCcccccchhhHHHHHHhHhh
Q 004631 474 RAFQEACVYSV-VEELAEHLAQWSYSVAFFELSFIPSVRLRDFCK 517 (741)
Q Consensus 474 ~~yqd~vie~~-~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K 517 (741)
..|-++|-.+. +.-+.-|+.+| ++-++..|..|+.
T Consensus 404 q~fld~v~qq~dl~~~rsylkly---------Tt~P~kkla~F~D 439 (525)
T KOG3677|consen 404 QVFLDEVSQQADLPTIRSYLKLY---------TTLPVKKLASFLD 439 (525)
T ss_pred HHHhHHHhhhccchHHHHHHHHH---------HhccHHHhhhccC
Confidence 56777777666 67788888887 5566677777763
No 50
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=28.01 E-value=3.5e+02 Score=26.28 Aligned_cols=82 Identities=16% Similarity=0.024 Sum_probs=47.0
Q ss_pred chhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhc-----cccCccchhhHHHHHHH
Q 004631 245 FPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNC-----HFINAVKLQHIQFLSNC 319 (741)
Q Consensus 245 f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~-----k~~n~~tl~~InfM~N~ 319 (741)
-+...+.+++.++..|......+.+.|=+|-. +....+..|...++..++..|-... ............-.-..
T Consensus 31 ~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~-l~~~~~~~f~~~ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f 109 (209)
T PF02854_consen 31 DPETLKEIVKLIFEKAVEEPNFSPLYARLCAA-LNSRFPSEFRSLLLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRF 109 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH-HhccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhH
Confidence 57788888888888887766445444433322 3333334777778888888887722 11112222233333456
Q ss_pred HHHHhCCC
Q 004631 320 VVELLGVD 327 (741)
Q Consensus 320 ~vEL~~ld 327 (741)
++|||...
T Consensus 110 l~eL~~~~ 117 (209)
T PF02854_consen 110 LAELFNFG 117 (209)
T ss_dssp HHHHHHTT
T ss_pred HHhhHhhc
Confidence 78888543
No 51
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=27.75 E-value=20 Score=33.15 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=7.5
Q ss_pred ChhHHHHHHHHHHHHHhh
Q 004631 124 QLGAVRSLMKAFRIACHY 141 (741)
Q Consensus 124 s~~alr~lv~AFRaA~~~ 141 (741)
++..+-....+|-+.-+|
T Consensus 42 p~p~fgea~~~~~~v~rY 59 (101)
T PF09026_consen 42 PVPEFGEAMAYFTMVKRY 59 (101)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred cchhHHHHHhhcchHhhh
Confidence 344455556666444444
No 52
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.70 E-value=1.4e+03 Score=29.15 Aligned_cols=179 Identities=20% Similarity=0.314 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHhhh-----cCcHHHHHHHHH
Q 004631 159 SVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQ-----MTDTEMISFTLR 233 (741)
Q Consensus 159 ~VFn~vv~~~L~~lp~~l~~lL~~~~~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~LL~~-----ltd~~~l~~vL~ 233 (741)
.+-+.-++|||+|- ...-|+++--+++.||.++-..=++ |++++++...|.
T Consensus 178 ~ia~~aFqFCLkYq------------------------RktEFRrLCe~LR~HL~~i~k~~nq~~~v~Ln~~Etlql~LD 233 (988)
T KOG2072|consen 178 DIARKAFQFCLKYQ------------------------RKTEFRRLCELLRMHLDNINKHQNQSTRVDLNDPETLQLYLD 233 (988)
T ss_pred HHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCHHHHHHHHH
Confidence 56667788999881 1123666666777777766655443 455665544443
Q ss_pred H-hhh------cceee------------------eechhhHHHHHHHHH-HhhccCCCchhHHHHHHHHHHHHHcCCcch
Q 004631 234 R-LKF------SSLFL------------------AAFPSLLRKYVKAAL-HFWGTGGGALPVVAFLFLRDLCIRLGSDCL 287 (741)
Q Consensus 234 ~-l~~------l~p~l------------------~~f~kl~k~~LK~lv-~lWst~~~~vrv~AFl~Lr~l~~~~~~~~l 287 (741)
. +.+ +=-|= .+-|.+.-+|-..|+ -+|-+|+.-.--+|++-+-.+...++.++-
T Consensus 234 tRf~QLdvAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K~~T 313 (988)
T KOG2072|consen 234 TRFQQLDVAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNKNLT 313 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhccccc
Confidence 1 111 11111 122344444443333 456666665778888888888777777776
Q ss_pred hHHHHHHHHHHHhhccccC---cc-------chhhHHHH-HHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccch
Q 004631 288 DDCFKGIYKAYILNCHFIN---AV-------KLQHIQFL-SNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKE 356 (741)
Q Consensus 288 e~~LK~~Y~ayv~n~k~~n---~~-------tl~~InfM-~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe 356 (741)
..=|+.|=..-+-.+=.+. .+ -++.|..- ..-++-|+||+..-+=. .-|+- .+|..+-..--+
T Consensus 314 qde~q~~as~VlLaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~PTR~---~ll~e---~v~~gV~~~v~q 387 (988)
T KOG2072|consen 314 QDELQRMASRVLLAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAPPTRK---GLLKE---AVREGVLSKVDQ 387 (988)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccccccccccccchhhHHHHHHHHhCCCCCccHH---HHHHH---HHHhccHhhhhH
Confidence 6666655444433332222 11 12333222 22355677776543211 11111 122223333456
Q ss_pred hhceecchhhH
Q 004631 357 AFRKVYEWKFI 367 (741)
Q Consensus 357 ~~k~VYNWQfv 367 (741)
.++.+|||==+
T Consensus 388 e~kdLY~iLEv 398 (988)
T KOG2072|consen 388 EVKDLYNILEV 398 (988)
T ss_pred HHHHHHHHHHh
Confidence 78889999644
No 53
>PTZ00479 RAP Superfamily; Provisional
Probab=27.48 E-value=3e+02 Score=31.94 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCC
Q 004631 205 NHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGS 284 (741)
Q Consensus 205 ~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~ 284 (741)
..+...++.-+...|.+++..++ +.++..+..+- +-.+.++..+-+.++.-|..=...-=+-++.++.+|+.. +
T Consensus 115 ~efy~~~~~~v~~~L~~fssh~L-~~i~wALsrL~---Ird~~fL~~~ak~vl~r~~~~r~~dl~k~~nslakLg~~--~ 188 (435)
T PTZ00479 115 PEFYEKMLKFVQPLLPNFYSHSL-MCIAWALNRVQ---IRDEAFLSRFAKEVGEKFDDIRTTDLIKICNSLAKLGGY--T 188 (435)
T ss_pred HHHHHHHHHHHHHHhhhcCccHH-HHHHHHHHhcC---CCcHHHHHHHHHHHHhhccccCchhHHHHHHHHHHhcCC--c
Confidence 34777777777788877765543 33334443333 445888999999999999775444333455556665442 2
Q ss_pred cchhHHHHHHHHHH-----Hhhcc-ccCccchhhH-H-HHHHHHHHHhCC----CccchhHHHH---HHHHHHHHHHHHH
Q 004631 285 DCLDDCFKGIYKAY-----ILNCH-FINAVKLQHI-Q-FLSNCVVELLGV----DLPSAYQHAF---VFIRQLAMILRDA 349 (741)
Q Consensus 285 ~~le~~LK~~Y~ay-----v~n~k-~~n~~tl~~I-n-fM~N~~vEL~~l----d~~~aYq~AF---~YIRQLAihLRna 349 (741)
..+-..|...+.+= -++|| -+++.|+=.+ + =|+-.+.|.|.- --+.-||+|| +|||.+.-|+=+.
T Consensus 189 ~~l~k~l~~~~~~rle~~~~~~~r~~i~~it~~~Lf~d~m~~~~ler~s~~~~c~r~~hl~~~y~~aly~rl~~p~v~~~ 268 (435)
T PTZ00479 189 NNLKKFLSEKMVEKLESLFAQDFRNVVNDVTLIHLYDDNTQIYILERFSKMFICARPQHLQQAYKSAVAVRVLLPHVWFQ 268 (435)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhhcChhhHHHHhhhHHHHHHHHHccccceecccHHHHHHHhhhhhheeechHHHHh
Confidence 22222333333333 33556 4555443221 1 144466777542 2345677999 9999999999998
Q ss_pred hhhccchhhceecchhhHHHHHHHHHHHhccCCCCCCccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHHHhhcCc
Q 004631 350 FNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGT 429 (741)
Q Consensus 350 ~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~ 429 (741)
++.+++.-+ -++|.+=|.. -...|+ |++--+-++|..+--.-..
T Consensus 269 Ls~~~r~Fl-----------~r~s~r~i~~---------------------~~~~~S----~~h~dVS~~L~~mGI~H~n 312 (435)
T PTZ00479 269 LSKSVKSFY-----------TRLSMRRIPQ---------------------SLRKPS----PFQWDVSNCLAKLGISHRN 312 (435)
T ss_pred cCHHHHHHH-----------HHHhhccccc---------------------cCCCCc----HHHHHHHHHHHHhCCchhh
Confidence 888766211 1223332211 011122 4444488999988775544
Q ss_pred cccchHHHHHHhh
Q 004631 430 FIPVSMLLLDMLE 442 (741)
Q Consensus 430 FIPl~p~LleiL~ 442 (741)
-+...||.++|..
T Consensus 313 e~~~Gpf~iDI~~ 325 (435)
T PTZ00479 313 TFYWGCFWIDIGE 325 (435)
T ss_pred heeecCeEEEEec
Confidence 4558888888774
No 54
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.88 E-value=1.2e+03 Score=28.13 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHhhccCCCc--hhHHHHHHHHHHHHHcCCcchhHHHH
Q 004631 225 TEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGA--LPVVAFLFLRDLCIRLGSDCLDDCFK 292 (741)
Q Consensus 225 ~~~l~~vL~~l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~--vrv~AFl~Lr~l~~~~~~~~le~~LK 292 (741)
+.++.+....-+.++| |-..-.+++.+.+-+-+.+.+ +-.+.--.+|.+|.+.+-..=|..|.
T Consensus 292 TqIl~~aaQa~Hd~VP-----~d~iEpl~k~Ian~FVtD~~spEv~~vgiN~iREic~RvplaMteeLLq 356 (616)
T KOG2229|consen 292 TQILAAAAQASHDLVP-----PDIIEPLLKTIANNFVTDENSPEVMAVGINAIREICERVPLAMTEELLQ 356 (616)
T ss_pred HHHHHHHHHhccCCCC-----hHHhhHHHHHHHHHhcccCCCcceeehhhhHHHHHHhhcchhhcHHHHH
Confidence 4566666666666776 456667788888888776543 77778889999999988665555554
No 55
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=26.76 E-value=36 Score=33.01 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCchHHHH-hhhhhhhhhhhccchhhhhhh
Q 004631 631 SSWLPGSASKDKPPKEEKKK-KKRRMTQQEVVALEEDIVEDL 671 (741)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~v~d~ 671 (741)
.+|+|...-+.....+.+.- ||+|+ ..++|+|+++|=
T Consensus 68 r~w~p~d~i~e~~~~~~~~~d~k~~~----~~d~ddd~iddd 105 (129)
T PRK02363 68 RSWYPVDEIDEEIIPLEEKFDKKKKK----FMDGDDDIIDDD 105 (129)
T ss_pred ccccChhhhhhhhhcchhhhhhhccc----ccccchhhhccc
Confidence 47888775322222222111 33333 556677777533
No 56
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=26.31 E-value=58 Score=37.46 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=7.8
Q ss_pred hhhhcccCcccCC
Q 004631 668 VEDLVLSSDEEDG 680 (741)
Q Consensus 668 v~d~~ls~~~~~~ 680 (741)
-++|+-+||||++
T Consensus 212 ~d~~l~~Ssdee~ 224 (432)
T PF09073_consen 212 YDGLLASSSDEES 224 (432)
T ss_pred hhccccCCccccc
Confidence 4566777766543
No 57
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.98 E-value=5e+02 Score=29.21 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHH------hhhcceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 004631 207 LVKSYLGNSLHVLNQMTDTEMISFTLRR------LKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCI 280 (741)
Q Consensus 207 liKsyl~sll~LL~~ltd~~~l~~vL~~------l~~l~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~ 280 (741)
-+..||.-++.-|-.-++.+|-...|.. |++++|||+.|-. -++ ++ ++.
T Consensus 194 ELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~--eqi--------------t~--------Nl~- 248 (450)
T COG5095 194 ELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFN--EQI--------------TK--------NLK- 248 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHH--HHH--------------HH--------hhh-
Confidence 3446777777777555666675555554 5678999887721 111 11 110
Q ss_pred HcCCcchhHHHHHHHHHHHhhc-cccCccchhhHHHHHHHHHH-HhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhh
Q 004631 281 RLGSDCLDDCFKGIYKAYILNC-HFINAVKLQHIQFLSNCVVE-LLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAF 358 (741)
Q Consensus 281 ~~~~~~le~~LK~~Y~ayv~n~-k~~n~~tl~~InfM~N~~vE-L~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~ 358 (741)
+-..|- .+-.||.++++|. =|+.|---..+--.-.|++- =+|-+++- |-|--+|.+|..|-.-+-.+--.+|
T Consensus 249 --nl~~Lt-Tv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~d---he~~alRd~AA~ll~yV~~~F~~~Y 322 (450)
T COG5095 249 --NLEKLT-TVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDD---HEHYALRDVAADLLKYVFSNFSSSY 322 (450)
T ss_pred --hHHHHH-HHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcc---hhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 001111 2235777777773 45554332222223456654 34444443 8888889988887765554444444
Q ss_pred cee
Q 004631 359 RKV 361 (741)
Q Consensus 359 k~V 361 (741)
+++
T Consensus 323 ktL 325 (450)
T COG5095 323 KTL 325 (450)
T ss_pred hhh
Confidence 443
No 58
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.42 E-value=3.8e+02 Score=32.37 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhc----------------cccCccchhh-
Q 004631 250 RKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNC----------------HFINAVKLQH- 312 (741)
Q Consensus 250 k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~----------------k~~n~~tl~~- 312 (741)
+.++..+....+.....+||++--.|+.+-...|...+- -.-.||.+.++.- ...+-++-|+
T Consensus 335 ~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~ 413 (675)
T KOG0212|consen 335 GSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL 413 (675)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH
Confidence 455666666666777779999999999888776643221 1122222222211 0011111122
Q ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHH
Q 004631 313 IQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRD 348 (741)
Q Consensus 313 InfM~N~~vEL~~ld~~~aYq~AF~YIRQLAihLRn 348 (741)
+.| -+++.|||.-|...-|..|=.-||||...|--
T Consensus 414 ~~f-l~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 414 RKF-LLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred HHH-HHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH
Confidence 444 46899999999999999999999999887744
No 59
>PHA03154 hypothetical protein; Provisional
Probab=23.83 E-value=6.2e+02 Score=27.92 Aligned_cols=143 Identities=18% Similarity=0.159 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhh--cCcHHHHHHHHHHhhhcce-eeeechhhHHHHHHHHHHhhccCCCchhHHHHH--HHHHHHHH-cC
Q 004631 210 SYLGNSLHVLNQ--MTDTEMISFTLRRLKFSSL-FLAAFPSLLRKYVKAALHFWGTGGGALPVVAFL--FLRDLCIR-LG 283 (741)
Q Consensus 210 syl~sll~LL~~--ltd~~~l~~vL~~l~~l~p-~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl--~Lr~l~~~-~~ 283 (741)
-||..++++|-| ..+..++-.++.-+..++- .+...-.=.+..++-++-.=..+...+-+-+.| .|+++... +|
T Consensus 55 lfLakilQiL~qHR~~E~~Iipki~snl~YfL~eLl~~~y~~~~e~i~~vL~~v~~~~~d~gl~~~L~~~ip~l~~lkyP 134 (304)
T PHA03154 55 DFLLKICQLLMIHREEEQEIINKAKSNIIYFLNEILNAEYGEVKELAKNILCDVEIDKPDCELSAYLAQEIPKLIVLKYP 134 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhhhhhcccCCcccchHHHHHHHhHHHHHhhCC
Confidence 478888888855 3556666666655554443 222122233444555555554443333333333 35665543 22
Q ss_pred ---------CcchhHHHH------HHHHHHHhhcccc-CccchhhHHHHHHHHHHHhCCCc--cchhHH-HHHHHHHHHH
Q 004631 284 ---------SDCLDDCFK------GIYKAYILNCHFI-NAVKLQHIQFLSNCVVELLGVDL--PSAYQH-AFVFIRQLAM 344 (741)
Q Consensus 284 ---------~~~le~~LK------~~Y~ayv~n~k~~-n~~tl~~InfM~N~~vEL~~ld~--~~aYq~-AF~YIRQLAi 344 (741)
.++.+-||- +.|.. +++.--+ +..++|.++-+.|-.--||-.+. ..-|+. +|.-
T Consensus 135 ~~~~v~~~~~~~~~WcL~~~lgi~~yyk~-is~~v~~d~~~SmPSiqAls~lsK~LF~~~~~~~keypd~~FN~------ 207 (304)
T PHA03154 135 THFKVCEEIIPNGRWCLHNLLGIEPYYKD-FSDIVLHDPEISLGSVHAFSRLSKCLFWCDSFMNKIYPCNAFNS------ 207 (304)
T ss_pred CccccccCCCCcchhHHHhhhchhHhhhh-hhhhhhcCCCccchhHHHHHHHHHHHHHhcccCCccCCchhhhc------
Confidence 356667773 44555 6655333 34568999988888888876544 455664 5542
Q ss_pred HHHHHhhhccchhhceecchhhHHHHHHHHHHHhcc
Q 004631 345 ILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAY 380 (741)
Q Consensus 345 hLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~ 380 (741)
|.|-.=||+.|+..+
T Consensus 208 ---------------------ffNQvVfWTtvl~mY 222 (304)
T PHA03154 208 ---------------------SINQVVLWSTMFHFY 222 (304)
T ss_pred ---------------------hhhHHHHHHHHHHHH
Confidence 556667999999865
No 60
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=1.4e+03 Score=28.08 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=21.2
Q ss_pred CccchhhHHHHHHhhhhcccCccccchhhHHHHHHHHH
Q 004631 386 MKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRI 423 (741)
Q Consensus 386 L~pLiYPLvQIi~G~irLiPt~ry~PLR~h~ir~L~~L 423 (741)
+....--+|+++.+.+ ..+|+|.+.-|+.+++.|
T Consensus 357 ~g~~sl~~Vr~i~~ll----K~rn~~v~~~~~~~~lsL 390 (704)
T KOG2153|consen 357 GGSGSLAIVRIINSLL----KTRNYEVLPDMITTFLSL 390 (704)
T ss_pred ccchhHHHHHHHHHHh----hhhcccchhhHHHHHHhc
Confidence 4444445555555444 367888888777777665
No 61
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.51 E-value=29 Score=43.15 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred ccCcccCcc--hhhhccCCCCCcccchhHH-HHHHHHHHHHhhcChHHHHhhhhhhhhhccCCCCCCccccccccccccc
Q 004631 9 NLDHEICDD--EMEEQDETSRPVSKSKKVA-KEHKEQLQRLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVETDMEDAEM 85 (741)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~hk~~L~~LkekDPEFykyLqEnD~~LL~F~~~d~~dded~~~ed~e~ 85 (741)
|=|.|..++ |++|+|++.+.++...+++ ..--+-++.+.+.|-| -+--+|+.|+++-..|+|-..+.+
T Consensus 1406 d~DeeeD~e~Ed~dEddd~edd~D~dd~~e~~~~D~~d~~~s~eDn~---------de~sdeDGd~~d~~~D~df~~ele 1476 (1516)
T KOG1832|consen 1406 DSDEEEDDETEDEDEDDDEEDDLDRDDGLEGDNSDSGDDDLSSEDNE---------DEVSDEDGDEADILIDGDFMEELE 1476 (1516)
T ss_pred ccCccccchhhccccccccccccccccchhccccccccccccccccc---------ccccCcccccccCCCChHHHHHHh
Q ss_pred ccccCCCCCCcccccC
Q 004631 86 QEDEDVGPDMEDEEEK 101 (741)
Q Consensus 86 ~~~~~~~~~~~~~~~~ 101 (741)
+++++++.+.++.+++
T Consensus 1477 eGedgdD~ds~D~Dee 1492 (1516)
T KOG1832|consen 1477 EGEDGDDGDSEDEDEE 1492 (1516)
T ss_pred hcCCCCCCCccccchh
No 62
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.51 E-value=2.8e+02 Score=33.42 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=45.3
Q ss_pred hhhccchhhceecchhhHHHHHHHHHHHhccCCCCCCccchhhHHHHHHhhhhcc--cCccccchhhHHHHHHHHHHhhc
Q 004631 350 FNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLV--PTARYFPLRLRCVRMLNRIAAST 427 (741)
Q Consensus 350 ~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLi--Pt~ry~PLR~h~ir~L~~Ls~~T 427 (741)
+++-+|+++-.--||-|-+|- --|++.|++|.++-. --+..|=||||+|-.+|..+-+|
T Consensus 114 ~~~c~kd~is~~k~w~f~~~~-------------------s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hc 174 (757)
T KOG4368|consen 114 IDTCTKDAISAGKNWMFSNAK-------------------SPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHC 174 (757)
T ss_pred HHHHhHHHHHHhhhhhhhcCC-------------------CchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHH
Confidence 344468888888999887652 237899999998774 34688999999999888776655
No 63
>KOG4542 consensus Predicted membrane protein [Function unknown]
Probab=23.29 E-value=45 Score=30.31 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=11.8
Q ss_pred HHHHhhhhhhhhhccCCCCCC
Q 004631 52 EFFKFLQEHDKELLEFDDDDI 72 (741)
Q Consensus 52 EFykyLqEnD~~LL~F~~~d~ 72 (741)
-|-.||+|||= |-+.|+
T Consensus 76 n~A~~LEENdi----FVP~Dd 92 (96)
T KOG4542|consen 76 NFAALLEENDI----FVPEDD 92 (96)
T ss_pred hHHHhhhhccc----ccCCCC
Confidence 46789999985 555543
No 64
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.14 E-value=53 Score=40.36 Aligned_cols=64 Identities=28% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhhhhccchhhhhhhcccCcccCCCCC---CCCCCCCCCCCCCCCCCCC-CCCCCCCchhhhhhhcC
Q 004631 656 TQQEVVALEEDIVEDLVLSSDEEDGSMS---DAPADEDGSASDVFSSDKD-DDLKPVSPREQTKKRKL 719 (741)
Q Consensus 656 ~~~~~~~~~~d~v~d~~ls~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 719 (741)
....+.++.||+=||..=|+|+++|..+ +.+.+.|+..++--+...+ |+.+..-.++++||++.
T Consensus 891 ~~~~e~~~~Ed~dEdi~~~~D~~~D~~d~~d~~e~e~d~~~~~e~~~~~g~d~~d~~~~~s~kkkk~k 958 (988)
T KOG2038|consen 891 LGSEEDGGEEDDDEDIGDSDDDEDDTSDAEDDFEDEDDDEVDDEDGGEGGKDDADISGDRSKKKKKEK 958 (988)
T ss_pred ccCcccccccccchhccccccccccchhhccccccccccccccccccccCccccccccccccchhhhh
No 65
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.87 E-value=1.1e+03 Score=30.96 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=82.3
Q ss_pred cCCCchhHHHHHHHHHHHHHcCCcc--hhHHHHHHHHHHHhhccccCccchhhHHHHHHHHHHHhCC--------Cccch
Q 004631 262 TGGGALPVVAFLFLRDLCIRLGSDC--LDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGV--------DLPSA 331 (741)
Q Consensus 262 t~~~~vrv~AFl~Lr~l~~~~~~~~--le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N~~vEL~~l--------d~~~a 331 (741)
.++++|.-.+--||+.+.+..+..- -..+...+|.-|.- ..|.-|-|+-|..-.+-.-.. .|.++
T Consensus 106 stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~-----~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~ 180 (1176)
T KOG1248|consen 106 STNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAF-----AAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPAS 180 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHH-----HhcCchHHHHHHHHHHHHHHcCCCCCccccchHH
Confidence 3444566677777777766644321 11233333332221 223334444332222111111 14556
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccchhhceecchhhHHHHHHHHHHHhccCCCCCCccchhhHHHHHHhhhhcccCccccc
Q 004631 332 YQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFP 411 (741)
Q Consensus 332 Yq~AF~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs~~~~~s~L~pLiYPLvQIi~G~irLiPt~ry~P 411 (741)
--.|+.-++||+-.+=.+.+.+ -+|+|.|-..|++..+ ++||-||+.++++++...|+.
T Consensus 181 ~~vak~cl~~~e~~~~~a~~t~------------v~~~L~Ll~~~~~~~p-----~~li~sl~e~lL~i~~~s~v~---- 239 (1176)
T KOG1248|consen 181 LSVAKFCLALIESKLGSAENTT------------VLRSLMLLRDVLSTFP-----RPLIKSLCEVLLNITTESPVL---- 239 (1176)
T ss_pred HHHHHHHHHHHHhhhchHHHHH------------HHHHHHHHHHhhccCC-----HHHHHHHHHHHHhhcccchHH----
Confidence 6678999999987776444432 5789999999988743 678999999999988877653
Q ss_pred hhhHHHHHHHHHHhhcCccc
Q 004631 412 LRLRCVRMLNRIAASTGTFI 431 (741)
Q Consensus 412 LR~h~ir~L~~Ls~~Tg~FI 431 (741)
.++-|.+.|-.|....-.+.
T Consensus 240 v~~~~~q~l~~lf~~~~~~l 259 (1176)
T KOG1248|consen 240 VLLEVLQCLHSLFKKHPTAL 259 (1176)
T ss_pred HHHHHHHHHHHHHhcCCCcc
Confidence 34555555655555433333
No 66
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=22.58 E-value=33 Score=36.98 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHHhhhhhhhhhhhccchhhh-------------hhhcccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 004631 646 EEKKKKKRRMTQQEVVALEEDIV-------------EDLVLSSDEEDGSMSDAPADEDGSASDVFSSDKDDDLKPVSPRE 712 (741)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~d~v-------------~d~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (741)
+....+++.-.+-+.+.||++.+ .|...|++.+++++.|.++|.|+..-+-..+.+.-.-++.-.++
T Consensus 200 e~ee~~~~~~~e~E~v~~D~e~e~~e~~D~E~~~~~~~~~~~~~s~~d~d~e~esd~de~Ee~K~~~k~kk~~~~~k~kk 279 (303)
T KOG3064|consen 200 ENEEEEEDEDAELEEVEGDGELEAEETDDSEDWDGDDDSDESDDSDEDSDSEDESDSDEIEENKKESKKKKGKKAAKGKK 279 (303)
T ss_pred cccccccchhhhhhhccCCcccccccccchhhhcccchhhhhhhcccccccccCCchhhHHHhhhhhhhcccCCCccccc
Q ss_pred hhhh
Q 004631 713 QTKK 716 (741)
Q Consensus 713 ~~~~ 716 (741)
++++
T Consensus 280 k~~r 283 (303)
T KOG3064|consen 280 KRPR 283 (303)
T ss_pred cCCc
No 67
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.52 E-value=24 Score=34.27 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=24.6
Q ss_pred cchhhHHHHHHhhhhcccCccc-cchhhHHH
Q 004631 388 PLAYPLTQIISGVARLVPTARY-FPLRLRCV 417 (741)
Q Consensus 388 pLiYPLvQIi~G~irLiPt~ry-~PLR~h~i 417 (741)
-++||||=+|+|++|-..+..| |||.++.|
T Consensus 112 lsi~~lv~ti~a~~Ka~eGq~YryPLtiRfi 142 (143)
T COG3296 112 LSILSLVLTIIAAIKAYEGQEYRYPLTIRFI 142 (143)
T ss_pred HHHHHHHHHHHHHHHhhCCceeeeeeEEEee
Confidence 3499999999999999998766 78876543
No 68
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.59 E-value=92 Score=37.21 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=62.4
Q ss_pred eeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcc--hhHHHHHHHHHHHhhccccCccchhhHHHHH
Q 004631 240 LFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDC--LDDCFKGIYKAYILNCHFINAVKLQHIQFLS 317 (741)
Q Consensus 240 p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~--le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~ 317 (741)
.||-.||.+...-+-+++.|.-..+..||+.|.=-|=.+|+.-+..+ +-.+|-++. ...--.-+...+
T Consensus 48 kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL----------~tdd~~E~~~v~ 117 (556)
T PF05918_consen 48 KFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLL----------QTDDPVELDAVK 117 (556)
T ss_dssp HHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHT----------T---HHHHHHHH
T ss_pred HHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHH----------hcccHHHHHHHH
Confidence 48999999999999999999976665699999888888877644221 222333321 223345678889
Q ss_pred HHHHHHhCCCccchhHHHHHHHH
Q 004631 318 NCVVELLGVDLPSAYQHAFVFIR 340 (741)
Q Consensus 318 N~~vEL~~ld~~~aYq~AF~YIR 340 (741)
|++++||-+|+..+-.-.|.-|.
T Consensus 118 ~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 118 NSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999998888886
Done!