Query 004632
Match_columns 741
No_of_seqs 609 out of 3606
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 02:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.1E-95 5E-100 811.0 80.7 682 57-741 48-731 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-85 2.2E-90 733.3 73.0 629 3-636 92-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 4.1E-67 8.8E-72 569.8 58.2 481 260-741 85-568 (697)
4 PLN03218 maturation of RBCL 1; 100.0 3.9E-65 8.5E-70 553.9 61.1 536 91-668 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 4.7E-65 1E-69 553.3 55.3 530 26-601 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.7E-63 7.9E-68 538.9 57.4 473 158-633 84-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-42 7.3E-47 396.4 78.8 707 8-728 139-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-42 1.7E-46 393.3 79.3 713 8-733 104-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.2E-28 2.6E-33 281.9 69.3 643 63-733 31-744 (1157)
10 PRK11447 cellulose synthase su 100.0 2E-27 4.4E-32 271.8 67.6 626 33-695 32-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 9.4E-26 2E-30 245.2 62.9 627 74-731 58-741 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.3E-23 2.7E-28 228.8 59.9 665 13-717 24-760 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 4.6E-23 1E-27 197.8 37.3 443 265-719 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 4.4E-23 9.5E-28 198.0 30.4 419 301-730 52-485 (966)
15 KOG2002 TPR-containing nuclear 99.9 1.3E-19 2.9E-24 183.9 53.9 574 146-732 146-800 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-19 4.5E-24 193.5 46.0 417 265-729 130-570 (615)
17 KOG2002 TPR-containing nuclear 99.9 8.4E-18 1.8E-22 171.0 53.2 676 12-699 26-801 (1018)
18 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.3E-24 186.3 30.5 292 443-738 45-355 (389)
19 PRK15174 Vi polysaccharide exp 99.9 2.7E-18 5.8E-23 183.8 41.7 331 365-701 43-386 (656)
20 PRK10049 pgaA outer membrane p 99.9 1.5E-17 3.2E-22 182.3 47.4 386 305-729 23-455 (765)
21 PRK10049 pgaA outer membrane p 99.9 9.3E-18 2E-22 183.8 44.0 372 330-731 12-423 (765)
22 PRK15174 Vi polysaccharide exp 99.9 4E-18 8.8E-23 182.4 38.1 328 400-733 43-384 (656)
23 KOG2076 RNA polymerase III tra 99.9 1.1E-15 2.4E-20 154.8 52.0 632 38-726 148-891 (895)
24 KOG2076 RNA polymerase III tra 99.8 2.8E-15 6.1E-20 152.0 51.8 616 103-730 147-849 (895)
25 PRK11788 tetratricopeptide rep 99.8 2.7E-18 5.9E-23 175.9 31.5 294 311-636 49-354 (389)
26 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-16 3.3E-21 171.4 46.0 426 236-702 132-577 (615)
27 KOG4318 Bicoid mRNA stability 99.8 5.1E-17 1.1E-21 163.3 37.7 519 15-559 11-621 (1088)
28 KOG4422 Uncharacterized conser 99.8 3.7E-16 8.1E-21 144.2 40.3 449 60-566 116-593 (625)
29 PRK14574 hmsH outer membrane p 99.8 8.1E-16 1.8E-20 164.7 47.1 425 240-704 43-521 (822)
30 KOG0495 HAT repeat protein [RN 99.8 1.6E-13 3.4E-18 134.0 57.3 472 208-727 388-877 (913)
31 PRK14574 hmsH outer membrane p 99.8 2.4E-15 5.2E-20 161.1 45.5 421 306-731 43-514 (822)
32 KOG0495 HAT repeat protein [RN 99.8 2.6E-12 5.6E-17 125.7 56.0 603 43-709 265-893 (913)
33 KOG2003 TPR repeat-containing 99.8 1.2E-15 2.7E-20 141.8 31.7 469 207-716 212-709 (840)
34 KOG4318 Bicoid mRNA stability 99.8 1E-14 2.2E-19 147.0 38.1 553 81-661 11-622 (1088)
35 KOG4422 Uncharacterized conser 99.7 8E-14 1.7E-18 129.1 37.8 436 162-661 117-587 (625)
36 KOG0547 Translocase of outer m 99.7 1.3E-13 2.7E-18 130.2 33.4 216 510-729 337-565 (606)
37 KOG1915 Cell cycle control pro 99.7 5.4E-12 1.2E-16 118.8 43.8 455 231-695 73-584 (677)
38 KOG2003 TPR repeat-containing 99.7 1.6E-14 3.5E-19 134.5 26.6 423 302-729 206-688 (840)
39 KOG1915 Cell cycle control pro 99.7 7.1E-12 1.5E-16 118.0 41.5 455 265-729 76-584 (677)
40 PF13429 TPR_15: Tetratricopep 99.7 2.8E-16 6E-21 151.8 10.8 257 470-729 14-276 (280)
41 KOG1155 Anaphase-promoting com 99.6 3.3E-12 7.3E-17 120.0 31.9 357 331-728 162-534 (559)
42 KOG0985 Vesicle coat protein c 99.6 9.8E-09 2.1E-13 105.9 57.2 679 8-727 342-1246(1666)
43 KOG1126 DNA-binding cell divis 99.6 1.8E-13 4E-18 134.7 22.3 275 448-730 334-620 (638)
44 PRK10747 putative protoheme IX 99.6 1.9E-12 4.2E-17 130.8 30.4 275 446-729 97-389 (398)
45 KOG1155 Anaphase-promoting com 99.6 3.7E-11 8E-16 113.1 34.9 313 408-729 173-494 (559)
46 KOG1173 Anaphase-promoting com 99.6 3.6E-11 7.7E-16 116.3 35.0 262 463-729 243-517 (611)
47 KOG2047 mRNA splicing factor [ 99.6 1.6E-09 3.4E-14 106.5 46.5 543 125-719 76-712 (835)
48 KOG1126 DNA-binding cell divis 99.6 8.6E-13 1.9E-17 130.1 23.7 280 414-702 334-626 (638)
49 PRK10747 putative protoheme IX 99.6 1.8E-11 3.9E-16 123.8 33.4 286 377-697 97-391 (398)
50 KOG4162 Predicted calmodulin-b 99.5 1E-09 2.2E-14 110.4 43.7 401 326-730 317-783 (799)
51 TIGR00540 hemY_coli hemY prote 99.5 2.1E-11 4.5E-16 124.1 33.1 79 649-728 313-397 (409)
52 PF13429 TPR_15: Tetratricopep 99.5 4.6E-14 9.9E-19 136.3 11.8 250 439-695 14-276 (280)
53 TIGR00540 hemY_coli hemY prote 99.5 2.3E-11 5E-16 123.8 31.9 283 409-695 94-398 (409)
54 COG2956 Predicted N-acetylgluc 99.5 1.6E-11 3.5E-16 110.1 26.5 165 571-737 186-354 (389)
55 KOG1173 Anaphase-promoting com 99.5 1.2E-10 2.6E-15 112.7 33.7 273 435-711 246-533 (611)
56 KOG2047 mRNA splicing factor [ 99.5 3.8E-09 8.3E-14 103.9 44.0 533 97-652 104-711 (835)
57 KOG0985 Vesicle coat protein c 99.5 7.7E-08 1.7E-12 99.6 54.7 548 133-712 609-1324(1666)
58 KOG0547 Translocase of outer m 99.5 4.1E-10 9E-15 106.9 33.6 220 474-698 336-568 (606)
59 KOG3785 Uncharacterized conser 99.5 9.2E-10 2E-14 100.1 34.3 131 568-699 362-493 (557)
60 KOG2376 Signal recognition par 99.4 3.6E-09 7.7E-14 103.3 37.3 281 437-726 179-516 (652)
61 COG3071 HemY Uncharacterized e 99.4 7.2E-10 1.6E-14 103.1 31.2 284 377-694 97-388 (400)
62 COG3071 HemY Uncharacterized e 99.4 6.8E-10 1.5E-14 103.2 30.7 278 173-491 96-388 (400)
63 COG2956 Predicted N-acetylgluc 99.4 7.9E-10 1.7E-14 99.5 29.1 263 377-676 48-324 (389)
64 KOG1129 TPR repeat-containing 99.4 1.1E-11 2.5E-16 111.0 17.1 223 503-730 227-458 (478)
65 KOG3785 Uncharacterized conser 99.4 9E-09 2E-13 93.8 35.6 215 514-737 269-495 (557)
66 KOG3616 Selective LIM binding 99.4 3.2E-07 7E-12 91.9 48.9 576 39-709 742-1368(1636)
67 KOG1174 Anaphase-promoting com 99.4 3.4E-09 7.4E-14 98.6 32.9 268 435-707 234-511 (564)
68 TIGR02521 type_IV_pilW type IV 99.4 8.2E-11 1.8E-15 111.3 23.0 194 534-729 31-231 (234)
69 KOG1156 N-terminal acetyltrans 99.4 5.1E-07 1.1E-11 89.7 45.6 56 674-729 631-687 (700)
70 COG3063 PilF Tfp pilus assembl 99.3 1.4E-10 3.1E-15 99.4 18.6 156 571-729 41-201 (250)
71 KOG2376 Signal recognition par 99.3 4E-08 8.6E-13 96.2 37.1 146 514-661 356-517 (652)
72 KOG1156 N-terminal acetyltrans 99.3 1.6E-07 3.4E-12 93.2 41.4 376 242-661 52-465 (700)
73 KOG1840 Kinesin light chain [C 99.3 5.5E-10 1.2E-14 111.9 25.2 231 499-729 199-478 (508)
74 KOG3616 Selective LIM binding 99.3 2.9E-07 6.3E-12 92.2 43.4 584 41-725 456-1058(1636)
75 PRK12370 invasion protein regu 99.3 4.1E-10 8.8E-15 119.3 25.3 245 479-731 276-536 (553)
76 KOG4162 Predicted calmodulin-b 99.3 2E-07 4.3E-12 94.4 41.0 433 227-702 319-789 (799)
77 KOG1129 TPR repeat-containing 99.3 6.7E-11 1.4E-15 106.1 14.9 236 468-707 227-469 (478)
78 KOG1127 TPR repeat-containing 99.3 6E-07 1.3E-11 93.4 43.9 357 350-714 800-1193(1238)
79 PRK12370 invasion protein regu 99.3 6.8E-10 1.5E-14 117.6 23.8 211 513-729 275-501 (553)
80 KOG3617 WD40 and TPR repeat-co 99.3 2.1E-07 4.6E-12 94.4 38.1 242 24-288 720-993 (1416)
81 PF12569 NARP1: NMDA receptor- 99.2 1.1E-07 2.4E-12 97.0 35.4 49 678-726 467-516 (517)
82 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-09 2.5E-14 105.6 20.3 219 476-701 38-270 (296)
83 KOG1174 Anaphase-promoting com 99.2 1.7E-07 3.8E-12 87.5 33.0 301 294-599 191-503 (564)
84 TIGR02521 type_IV_pilW type IV 99.2 4.3E-09 9.4E-14 99.5 23.8 199 465-697 32-233 (234)
85 PF13041 PPR_2: PPR repeat fam 99.2 3.6E-11 7.8E-16 80.1 5.8 50 159-208 1-50 (50)
86 COG3063 PilF Tfp pilus assembl 99.2 1E-08 2.2E-13 88.3 20.6 189 539-729 40-235 (250)
87 PF13041 PPR_2: PPR repeat fam 99.2 1.3E-10 2.9E-15 77.3 6.9 50 563-612 1-50 (50)
88 KOG3617 WD40 and TPR repeat-co 99.2 1E-06 2.2E-11 89.7 36.9 239 129-391 725-994 (1416)
89 KOG1840 Kinesin light chain [C 99.2 2.7E-08 5.9E-13 100.0 26.0 198 469-694 246-477 (508)
90 KOG0548 Molecular co-chaperone 99.1 2.6E-07 5.7E-12 89.8 30.7 86 305-392 10-98 (539)
91 PRK11189 lipoprotein NlpI; Pro 99.1 3.8E-08 8.3E-13 95.1 24.6 213 513-732 40-267 (296)
92 KOG1127 TPR repeat-containing 99.1 3.1E-06 6.6E-11 88.4 38.5 577 131-728 493-1136(1238)
93 KOG0548 Molecular co-chaperone 99.1 8.1E-08 1.8E-12 93.2 24.7 373 340-729 9-454 (539)
94 KOG4340 Uncharacterized conser 99.0 4E-07 8.7E-12 81.3 25.0 182 541-729 248-442 (459)
95 KOG1125 TPR repeat-containing 99.0 8E-09 1.7E-13 100.9 15.8 214 510-729 296-526 (579)
96 KOG0624 dsRNA-activated protei 99.0 7.3E-07 1.6E-11 81.4 26.7 315 369-707 43-381 (504)
97 PF04733 Coatomer_E: Coatomer 99.0 1.6E-08 3.4E-13 96.0 16.8 247 443-700 11-269 (290)
98 KOG0624 dsRNA-activated protei 99.0 3.4E-06 7.4E-11 77.1 30.1 304 334-661 39-367 (504)
99 PF12569 NARP1: NMDA receptor- 99.0 1.4E-06 3E-11 89.1 31.0 125 503-628 198-333 (517)
100 cd05804 StaR_like StaR_like; a 99.0 1.6E-06 3.5E-11 87.6 30.8 292 435-730 8-336 (355)
101 KOG4340 Uncharacterized conser 98.9 5.5E-07 1.2E-11 80.5 22.6 351 23-391 4-373 (459)
102 PF04733 Coatomer_E: Coatomer 98.9 7.7E-08 1.7E-12 91.3 18.0 245 472-730 9-265 (290)
103 TIGR03302 OM_YfiO outer membra 98.9 1.8E-07 3.9E-12 88.0 19.8 180 533-731 32-233 (235)
104 PRK10370 formate-dependent nit 98.9 2.3E-07 4.9E-12 83.1 18.0 117 613-730 52-173 (198)
105 PRK15359 type III secretion sy 98.9 6.2E-08 1.3E-12 81.9 13.3 123 585-712 13-137 (144)
106 KOG1125 TPR repeat-containing 98.8 4.8E-07 1E-11 88.8 19.7 246 409-658 295-565 (579)
107 cd05804 StaR_like StaR_like; a 98.8 7.6E-06 1.6E-10 82.7 28.4 22 607-628 271-292 (355)
108 PRK04841 transcriptional regul 98.8 4.6E-05 9.9E-10 87.8 37.5 364 335-699 343-763 (903)
109 KOG1128 Uncharacterized conser 98.8 1.8E-06 3.9E-11 87.2 22.0 210 435-661 400-613 (777)
110 PLN02789 farnesyltranstransfer 98.8 3.8E-06 8.3E-11 81.0 23.2 183 544-729 81-301 (320)
111 PRK04841 transcriptional regul 98.7 0.0009 2E-08 77.2 46.9 368 235-629 345-760 (903)
112 PRK15359 type III secretion sy 98.7 1.3E-07 2.9E-12 79.9 11.6 108 620-731 13-122 (144)
113 PF12854 PPR_1: PPR repeat 98.7 1.2E-08 2.6E-13 60.5 3.2 34 23-56 1-34 (34)
114 PRK15179 Vi polysaccharide bio 98.7 2.2E-06 4.9E-11 91.2 22.0 129 599-729 85-216 (694)
115 KOG1070 rRNA processing protei 98.7 2.3E-06 5E-11 92.4 20.9 197 534-733 1458-1666(1710)
116 KOG3060 Uncharacterized conser 98.6 6.9E-06 1.5E-10 72.1 18.7 117 612-729 98-219 (289)
117 PLN02789 farnesyltranstransfer 98.6 2.6E-06 5.7E-11 82.1 17.9 186 544-732 47-252 (320)
118 PRK10370 formate-dependent nit 98.6 4.4E-06 9.5E-11 74.9 18.2 155 541-706 23-183 (198)
119 COG5010 TadD Flp pilus assembl 98.6 3.9E-06 8.4E-11 74.5 16.3 155 569-726 70-227 (257)
120 KOG1128 Uncharacterized conser 98.6 3.3E-06 7.1E-11 85.4 17.4 211 502-729 401-615 (777)
121 KOG1914 mRNA cleavage and poly 98.6 0.001 2.3E-08 65.5 34.8 127 602-729 368-500 (656)
122 TIGR03302 OM_YfiO outer membra 98.6 4E-06 8.7E-11 78.8 17.2 184 496-699 30-235 (235)
123 TIGR02552 LcrH_SycD type III s 98.5 1.1E-06 2.4E-11 74.2 11.6 99 603-702 20-120 (135)
124 PRK15179 Vi polysaccharide bio 98.5 2E-05 4.4E-10 84.1 22.9 135 564-701 85-222 (694)
125 COG5010 TadD Flp pilus assembl 98.5 1.9E-05 4E-10 70.3 18.6 152 538-692 70-227 (257)
126 KOG3081 Vesicle coat complex C 98.5 1.7E-05 3.7E-10 70.3 17.8 105 611-718 148-258 (299)
127 KOG1070 rRNA processing protei 98.5 3.8E-05 8.3E-10 83.4 23.8 224 297-521 1458-1693(1710)
128 COG4783 Putative Zn-dependent 98.5 6.4E-05 1.4E-09 73.0 23.0 174 548-726 251-433 (484)
129 PRK14720 transcript cleavage f 98.5 2.3E-05 5.1E-10 84.3 21.7 245 463-734 30-288 (906)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.3E-06 1.6E-10 80.5 15.9 123 602-728 171-295 (395)
131 PRK15363 pathogenicity island 98.4 2.9E-06 6.2E-11 70.0 11.0 94 637-730 37-132 (157)
132 TIGR02552 LcrH_SycD type III s 98.4 5.6E-06 1.2E-10 69.9 13.3 108 622-731 5-115 (135)
133 KOG3081 Vesicle coat complex C 98.4 7.9E-05 1.7E-09 66.3 20.0 153 543-701 117-276 (299)
134 PF12854 PPR_1: PPR repeat 98.4 3.2E-07 6.9E-12 54.4 3.6 32 125-156 2-33 (34)
135 KOG1914 mRNA cleavage and poly 98.4 0.0032 7E-08 62.2 38.9 77 193-271 17-95 (656)
136 COG4783 Putative Zn-dependent 98.3 6.7E-05 1.5E-09 72.9 19.3 134 576-730 317-454 (484)
137 KOG2053 Mitochondrial inherita 98.3 0.0069 1.5E-07 63.8 42.9 101 73-177 22-126 (932)
138 KOG3060 Uncharacterized conser 98.3 4.8E-05 1E-09 67.0 16.2 151 578-729 25-182 (289)
139 KOG2053 Mitochondrial inherita 98.3 0.0091 2E-07 62.9 44.0 107 208-318 21-131 (932)
140 PRK14720 transcript cleavage f 98.3 0.00069 1.5E-08 73.4 27.1 80 501-593 118-197 (906)
141 PF09976 TPR_21: Tetratricopep 98.2 3.4E-05 7.4E-10 65.7 13.3 85 641-726 54-143 (145)
142 PF09976 TPR_21: Tetratricopep 98.2 7.6E-05 1.6E-09 63.5 15.2 124 568-694 15-145 (145)
143 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.3E-05 7.2E-10 63.5 11.5 61 669-729 41-104 (119)
144 COG3898 Uncharacterized membra 98.2 0.0068 1.5E-07 57.4 27.0 242 475-729 131-391 (531)
145 PF12895 Apc3: Anaphase-promot 98.2 2.5E-06 5.5E-11 64.5 4.3 78 648-726 2-83 (84)
146 cd00189 TPR Tetratricopeptide 98.1 2.6E-05 5.6E-10 61.3 10.2 93 638-730 3-97 (100)
147 PF13432 TPR_16: Tetratricopep 98.1 8.5E-06 1.8E-10 58.1 6.5 60 672-731 2-61 (65)
148 COG4235 Cytochrome c biogenesi 98.1 6.6E-05 1.4E-09 68.8 12.8 107 632-738 153-264 (287)
149 PF13414 TPR_11: TPR repeat; P 98.1 9.6E-06 2.1E-10 58.7 6.2 64 666-729 2-66 (69)
150 COG4700 Uncharacterized protei 98.0 0.00045 9.7E-09 57.8 15.4 133 596-729 85-221 (251)
151 PF07079 DUF1347: Protein of u 98.0 0.015 3.3E-07 56.3 36.8 189 535-727 299-521 (549)
152 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00013 2.8E-09 60.0 12.4 104 602-705 4-114 (119)
153 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.7E-09 70.4 15.6 122 538-662 173-295 (395)
154 PLN03088 SGT1, suppressor of 98.0 5.7E-05 1.2E-09 75.0 11.6 108 606-714 8-117 (356)
155 KOG0553 TPR repeat-containing 98.0 7.4E-05 1.6E-09 68.0 10.7 93 574-670 90-185 (304)
156 KOG0550 Molecular chaperone (D 98.0 0.00024 5.1E-09 67.4 14.2 162 566-731 169-351 (486)
157 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.9E-10 48.6 4.2 34 162-195 1-34 (35)
158 TIGR00756 PPR pentatricopeptid 98.0 1.6E-05 3.5E-10 48.1 4.5 34 62-95 2-35 (35)
159 KOG0553 TPR repeat-containing 97.9 3.6E-05 7.9E-10 69.9 8.1 109 607-716 88-198 (304)
160 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.2E-10 47.3 4.1 33 61-93 2-34 (34)
161 PLN03088 SGT1, suppressor of 97.9 0.0002 4.3E-09 71.1 13.1 96 571-669 8-105 (356)
162 PRK02603 photosystem I assembl 97.9 0.00016 3.4E-09 63.8 10.8 79 638-716 38-121 (172)
163 PF13812 PPR_3: Pentatricopept 97.8 2.6E-05 5.6E-10 46.8 4.0 33 162-194 2-34 (34)
164 PRK02603 photosystem I assembl 97.8 0.00051 1.1E-08 60.6 13.5 129 565-715 35-165 (172)
165 PRK10153 DNA-binding transcrip 97.8 0.00063 1.4E-08 70.6 15.8 138 563-702 335-488 (517)
166 PF14559 TPR_19: Tetratricopep 97.8 2.6E-05 5.6E-10 56.2 4.2 53 678-730 2-54 (68)
167 PF14938 SNAP: Soluble NSF att 97.8 0.0024 5.2E-08 61.5 18.6 145 542-698 102-268 (282)
168 PF13432 TPR_16: Tetratricopep 97.8 5.7E-05 1.2E-09 53.8 5.6 61 641-701 3-65 (65)
169 CHL00033 ycf3 photosystem I as 97.8 0.00022 4.7E-09 62.7 10.1 93 635-727 35-139 (168)
170 cd00189 TPR Tetratricopeptide 97.8 0.0003 6.6E-09 55.0 10.1 91 607-698 7-99 (100)
171 PF13371 TPR_9: Tetratricopept 97.7 0.0001 2.2E-09 54.0 6.5 58 675-732 3-60 (73)
172 KOG0550 Molecular chaperone (D 97.7 0.0099 2.1E-07 56.9 20.7 328 373-725 58-438 (486)
173 PRK15331 chaperone protein Sic 97.7 0.00069 1.5E-08 56.5 11.6 85 645-729 47-133 (165)
174 PF14559 TPR_19: Tetratricopep 97.7 5.1E-05 1.1E-09 54.7 4.5 63 646-708 2-66 (68)
175 PF12895 Apc3: Anaphase-promot 97.6 0.0001 2.2E-09 55.7 5.3 79 578-660 2-83 (84)
176 PF07079 DUF1347: Protein of u 97.6 0.076 1.7E-06 51.8 38.5 57 576-639 473-529 (549)
177 KOG1130 Predicted G-alpha GTPa 97.6 0.00057 1.2E-08 64.7 10.8 128 602-729 197-343 (639)
178 PRK10866 outer membrane biogen 97.6 0.012 2.6E-07 54.8 19.3 173 539-729 37-240 (243)
179 PF05843 Suf: Suppressor of fo 97.6 0.0023 5.1E-08 61.2 15.0 135 566-702 2-142 (280)
180 PRK10153 DNA-binding transcrip 97.6 0.0027 5.9E-08 66.0 16.4 133 596-731 333-483 (517)
181 PF01535 PPR: PPR repeat; Int 97.6 0.00011 2.4E-09 42.9 3.5 29 62-90 2-30 (31)
182 PRK10803 tol-pal system protei 97.5 0.00088 1.9E-08 62.7 11.2 98 602-701 145-251 (263)
183 KOG2041 WD40 repeat protein [G 97.5 0.15 3.3E-06 52.5 27.3 124 245-387 748-875 (1189)
184 PF13431 TPR_17: Tetratricopep 97.5 6.4E-05 1.4E-09 44.5 2.1 34 689-722 1-34 (34)
185 PRK15363 pathogenicity island 97.5 0.0053 1.2E-07 51.1 13.9 90 569-661 39-129 (157)
186 PF12688 TPR_5: Tetratrico pep 97.5 0.0015 3.3E-08 52.3 10.4 88 606-693 7-101 (120)
187 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3E-09 42.4 3.4 31 162-192 1-31 (31)
188 CHL00033 ycf3 photosystem I as 97.5 0.0021 4.5E-08 56.5 12.4 62 567-628 37-100 (168)
189 PF14938 SNAP: Soluble NSF att 97.5 0.11 2.4E-06 50.0 25.7 96 567-662 157-264 (282)
190 KOG1538 Uncharacterized conser 97.5 0.037 8.1E-07 56.1 21.3 67 606-695 779-845 (1081)
191 PF13414 TPR_11: TPR repeat; P 97.4 0.00026 5.5E-09 51.1 4.7 64 635-698 3-69 (69)
192 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00073 1.6E-08 66.2 8.9 66 664-729 72-140 (453)
193 KOG1538 Uncharacterized conser 97.4 0.047 1E-06 55.4 21.1 120 127-289 553-672 (1081)
194 PRK10803 tol-pal system protei 97.3 0.0028 6.1E-08 59.3 11.7 84 646-729 154-245 (263)
195 PF10037 MRP-S27: Mitochondria 97.3 0.0022 4.8E-08 63.7 11.5 118 127-244 63-186 (429)
196 COG3898 Uncharacterized membra 97.3 0.17 3.6E-06 48.5 25.9 256 363-629 117-392 (531)
197 PF05843 Suf: Suppressor of fo 97.3 0.0033 7.2E-08 60.2 12.2 129 601-730 2-136 (280)
198 KOG2041 WD40 repeat protein [G 97.3 0.27 6E-06 50.7 27.4 153 209-390 747-904 (1189)
199 PF08579 RPM2: Mitochondrial r 97.3 0.0018 3.8E-08 49.7 8.0 78 166-243 30-116 (120)
200 PF03704 BTAD: Bacterial trans 97.3 0.0033 7.1E-08 53.7 11.0 115 610-737 16-137 (146)
201 COG4700 Uncharacterized protei 97.3 0.056 1.2E-06 45.8 17.1 94 533-628 88-188 (251)
202 KOG1130 Predicted G-alpha GTPa 97.3 0.0035 7.6E-08 59.6 11.4 83 373-456 26-118 (639)
203 PRK10866 outer membrane biogen 97.3 0.067 1.5E-06 49.9 20.1 63 470-533 38-103 (243)
204 PF13371 TPR_9: Tetratricopept 97.3 0.001 2.2E-08 48.6 6.5 66 642-707 2-69 (73)
205 PF08579 RPM2: Mitochondrial r 97.3 0.0045 9.8E-08 47.5 9.8 80 467-546 28-116 (120)
206 PF13428 TPR_14: Tetratricopep 97.2 0.00059 1.3E-08 43.6 4.3 42 668-709 2-43 (44)
207 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.23 5E-06 48.5 34.0 133 566-701 398-536 (660)
208 KOG2796 Uncharacterized conser 97.2 0.023 5.1E-07 50.9 15.2 134 568-701 180-320 (366)
209 PF12688 TPR_5: Tetratrico pep 97.2 0.012 2.6E-07 47.2 12.4 91 370-460 7-102 (120)
210 KOG0543 FKBP-type peptidyl-pro 97.2 0.0049 1.1E-07 59.1 11.8 137 572-729 215-354 (397)
211 PF04840 Vps16_C: Vps16, C-ter 97.2 0.26 5.7E-06 47.8 31.1 76 544-625 187-262 (319)
212 PF13281 DUF4071: Domain of un 97.1 0.18 3.9E-06 49.3 21.8 158 542-701 149-339 (374)
213 PF10037 MRP-S27: Mitochondria 97.1 0.013 2.8E-07 58.4 14.5 93 468-560 70-164 (429)
214 PF13512 TPR_18: Tetratricopep 97.1 0.01 2.2E-07 48.5 10.9 90 641-730 16-128 (142)
215 COG4235 Cytochrome c biogenesi 97.0 0.031 6.7E-07 51.8 14.6 105 597-702 152-262 (287)
216 PF13424 TPR_12: Tetratricopep 97.0 0.0011 2.4E-08 49.2 4.6 63 667-729 5-74 (78)
217 PF04840 Vps16_C: Vps16, C-ter 97.0 0.38 8.3E-06 46.7 27.8 78 440-523 184-261 (319)
218 PF06239 ECSIT: Evolutionarily 97.0 0.0096 2.1E-07 52.1 10.4 96 454-549 35-153 (228)
219 COG1729 Uncharacterized protei 97.0 0.0091 2E-07 54.5 10.6 102 602-704 144-252 (262)
220 PF13525 YfiO: Outer membrane 96.9 0.038 8.3E-07 50.1 14.3 161 543-721 14-198 (203)
221 KOG2280 Vacuolar assembly/sort 96.9 0.76 1.7E-05 48.2 31.0 327 368-725 441-794 (829)
222 KOG2796 Uncharacterized conser 96.8 0.087 1.9E-06 47.4 15.3 135 466-602 179-321 (366)
223 PF06239 ECSIT: Evolutionarily 96.8 0.0064 1.4E-07 53.2 8.0 97 49-145 34-153 (228)
224 KOG2280 Vacuolar assembly/sort 96.8 0.89 1.9E-05 47.8 27.9 97 291-389 426-532 (829)
225 PF13525 YfiO: Outer membrane 96.8 0.41 8.9E-06 43.4 19.9 59 471-529 12-72 (203)
226 PRK11906 transcriptional regul 96.7 0.078 1.7E-06 52.6 15.8 144 580-725 273-431 (458)
227 KOG0543 FKBP-type peptidyl-pro 96.7 0.01 2.2E-07 57.1 9.1 65 667-731 257-321 (397)
228 COG0457 NrfG FOG: TPR repeat [ 96.6 0.6 1.3E-05 43.8 27.3 192 537-729 62-264 (291)
229 PRK11906 transcriptional regul 96.6 0.04 8.7E-07 54.6 12.7 115 615-729 273-400 (458)
230 KOG2114 Vacuolar assembly/sort 96.6 1.4 3E-05 47.1 26.3 120 31-157 336-458 (933)
231 PF09205 DUF1955: Domain of un 96.5 0.29 6.4E-06 39.0 14.6 141 575-733 12-152 (161)
232 KOG4555 TPR repeat-containing 96.5 0.033 7.1E-07 43.9 9.1 90 609-699 52-147 (175)
233 COG1729 Uncharacterized protei 96.5 0.03 6.5E-07 51.2 10.4 95 637-732 144-246 (262)
234 KOG1941 Acetylcholine receptor 96.5 0.034 7.3E-07 52.3 10.8 162 567-728 85-273 (518)
235 PRK15331 chaperone protein Sic 96.5 0.04 8.7E-07 46.3 10.1 88 607-695 44-133 (165)
236 KOG1585 Protein required for f 96.4 0.33 7.1E-06 43.4 15.8 46 677-723 200-249 (308)
237 PF13424 TPR_12: Tetratricopep 96.4 0.0043 9.4E-08 46.0 3.9 27 669-695 48-74 (78)
238 PF03704 BTAD: Bacterial trans 96.2 0.038 8.3E-07 47.1 9.4 71 567-639 64-140 (146)
239 COG3118 Thioredoxin domain-con 96.2 0.28 6.1E-06 45.5 15.0 164 552-717 121-288 (304)
240 COG4105 ComL DNA uptake lipopr 96.2 0.98 2.1E-05 41.2 19.2 58 672-729 172-232 (254)
241 COG3118 Thioredoxin domain-con 96.2 0.52 1.1E-05 43.8 16.4 120 609-730 143-265 (304)
242 KOG1258 mRNA processing protei 96.2 1.9 4.1E-05 44.4 32.0 180 534-715 297-489 (577)
243 PF13281 DUF4071: Domain of un 96.1 0.95 2.1E-05 44.5 19.1 72 438-509 146-227 (374)
244 KOG1941 Acetylcholine receptor 96.1 0.33 7.2E-06 46.0 15.1 124 538-661 126-272 (518)
245 KOG4234 TPR repeat-containing 95.9 0.032 7E-07 47.7 7.1 125 607-731 102-234 (271)
246 KOG1586 Protein required for f 95.7 1 2.3E-05 40.1 15.4 21 681-701 209-229 (288)
247 PF04184 ST7: ST7 protein; In 95.7 0.39 8.5E-06 48.0 14.3 69 639-707 263-336 (539)
248 PF10300 DUF3808: Protein of u 95.6 0.67 1.4E-05 48.2 16.9 159 569-729 192-375 (468)
249 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.49 1.1E-05 47.1 14.8 62 565-628 75-140 (453)
250 COG4649 Uncharacterized protei 95.6 1.2 2.6E-05 37.6 15.6 119 575-695 68-195 (221)
251 KOG2610 Uncharacterized conser 95.5 0.63 1.4E-05 43.7 14.0 160 576-737 114-283 (491)
252 KOG4555 TPR repeat-containing 95.4 0.086 1.9E-06 41.7 7.2 91 641-731 49-145 (175)
253 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.2 6.9E-05 41.0 35.2 124 534-661 397-528 (660)
254 PF13512 TPR_18: Tetratricopep 95.4 0.51 1.1E-05 38.9 11.8 117 571-702 16-134 (142)
255 PF07719 TPR_2: Tetratricopept 95.4 0.041 8.9E-07 32.5 4.3 31 669-699 3-33 (34)
256 PF10300 DUF3808: Protein of u 95.3 0.39 8.5E-06 49.9 14.0 25 503-527 192-216 (468)
257 COG0457 NrfG FOG: TPR repeat [ 95.2 2.8 6E-05 39.1 25.9 198 500-699 60-268 (291)
258 smart00299 CLH Clathrin heavy 95.2 1.7 3.6E-05 36.6 15.8 126 568-712 10-136 (140)
259 KOG2610 Uncharacterized conser 95.2 0.53 1.1E-05 44.2 12.5 155 545-701 114-283 (491)
260 PF00515 TPR_1: Tetratricopept 95.1 0.037 8.1E-07 32.7 3.7 31 669-699 3-33 (34)
261 PF12921 ATP13: Mitochondrial 95.1 0.3 6.5E-06 39.8 9.8 50 596-645 48-98 (126)
262 KOG1258 mRNA processing protei 95.1 4.8 0.0001 41.6 29.4 127 61-190 46-180 (577)
263 KOG1585 Protein required for f 95.0 2.5 5.5E-05 38.1 16.6 20 470-489 97-116 (308)
264 PF04184 ST7: ST7 protein; In 94.9 2 4.2E-05 43.3 16.3 102 601-702 260-381 (539)
265 KOG2114 Vacuolar assembly/sort 94.8 7.1 0.00015 42.1 29.4 118 235-360 338-458 (933)
266 PF13176 TPR_7: Tetratricopept 94.8 0.06 1.3E-06 32.3 3.8 26 703-728 1-26 (36)
267 PF04053 Coatomer_WDAD: Coatom 94.7 0.93 2E-05 46.4 14.4 159 473-662 270-429 (443)
268 COG4649 Uncharacterized protei 94.7 1 2.2E-05 38.0 11.7 129 601-730 60-196 (221)
269 KOG3941 Intermediate in Toll s 94.5 0.37 8.1E-06 44.0 9.6 98 453-550 54-174 (406)
270 PRK11619 lytic murein transgly 94.5 8.9 0.00019 41.7 33.7 126 577-708 253-383 (644)
271 PF02259 FAT: FAT domain; Int 94.5 6.1 0.00013 39.7 21.6 150 563-714 144-305 (352)
272 PF12921 ATP13: Mitochondrial 94.4 1 2.2E-05 36.7 11.1 93 498-608 1-96 (126)
273 COG2976 Uncharacterized protei 94.2 1.7 3.6E-05 37.8 12.3 114 583-699 70-191 (207)
274 KOG4234 TPR repeat-containing 94.1 0.86 1.9E-05 39.5 10.3 91 572-666 102-200 (271)
275 COG3629 DnrI DNA-binding trans 94.0 0.31 6.6E-06 45.6 8.3 62 668-729 154-215 (280)
276 TIGR02561 HrpB1_HrpK type III 93.5 0.43 9.3E-06 39.3 7.4 50 680-729 23-72 (153)
277 KOG3941 Intermediate in Toll s 93.5 0.43 9.3E-06 43.6 8.1 109 49-157 54-186 (406)
278 PF13428 TPR_14: Tetratricopep 93.5 0.16 3.4E-06 32.3 4.0 32 701-732 1-32 (44)
279 PF07719 TPR_2: Tetratricopept 93.4 0.15 3.2E-06 30.0 3.6 29 702-730 2-30 (34)
280 PF09613 HrpB1_HrpK: Bacterial 93.2 0.59 1.3E-05 39.3 8.0 73 646-718 21-95 (160)
281 PF04053 Coatomer_WDAD: Coatom 93.1 2.8 6.2E-05 43.0 14.3 130 402-559 298-427 (443)
282 KOG0890 Protein kinase of the 93.0 29 0.00063 42.7 31.4 282 435-731 1422-1732(2382)
283 PF08631 SPO22: Meiosis protei 93.0 9 0.0002 36.8 23.7 19 708-726 253-271 (278)
284 PF13170 DUF4003: Protein of u 92.9 3.1 6.7E-05 40.0 13.6 78 581-658 159-240 (297)
285 PF02259 FAT: FAT domain; Int 92.9 5 0.00011 40.3 16.3 67 664-730 143-213 (352)
286 KOG1920 IkappaB kinase complex 92.9 20 0.00044 40.6 23.2 52 245-307 894-945 (1265)
287 COG4105 ComL DNA uptake lipopr 92.9 7.6 0.00017 35.7 21.7 73 473-545 43-117 (254)
288 KOG4648 Uncharacterized conser 92.8 0.26 5.6E-06 46.3 5.8 97 605-703 102-201 (536)
289 KOG1920 IkappaB kinase complex 92.7 22 0.00047 40.4 21.9 141 536-693 910-1052(1265)
290 smart00299 CLH Clathrin heavy 92.6 5.6 0.00012 33.4 14.8 46 163-209 9-54 (140)
291 KOG1464 COP9 signalosome, subu 92.5 8.4 0.00018 35.3 19.6 219 469-694 70-330 (440)
292 PF13181 TPR_8: Tetratricopept 92.5 0.22 4.8E-06 29.3 3.5 29 670-698 4-32 (34)
293 PF00515 TPR_1: Tetratricopept 92.5 0.24 5.2E-06 29.2 3.6 29 702-730 2-30 (34)
294 PF08631 SPO22: Meiosis protei 92.4 11 0.00024 36.3 25.6 19 676-694 255-273 (278)
295 COG3629 DnrI DNA-binding trans 92.4 1.3 2.9E-05 41.5 9.9 77 566-644 154-236 (280)
296 PF09205 DUF1955: Domain of un 92.3 5.1 0.00011 32.3 14.3 65 466-531 88-152 (161)
297 PF13176 TPR_7: Tetratricopept 92.1 0.24 5.1E-06 29.7 3.3 27 669-695 1-27 (36)
298 PF04097 Nic96: Nup93/Nic96; 91.9 15 0.00033 39.9 18.8 86 471-561 265-354 (613)
299 COG4785 NlpI Lipoprotein NlpI, 91.9 8.6 0.00019 34.1 14.6 26 703-728 239-264 (297)
300 PF14853 Fis1_TPR_C: Fis1 C-te 91.9 1.2 2.6E-05 29.5 6.5 39 669-707 3-41 (53)
301 PRK09687 putative lyase; Provi 91.7 13 0.00028 35.7 25.5 72 332-408 205-276 (280)
302 PF13174 TPR_6: Tetratricopept 91.7 0.31 6.8E-06 28.3 3.5 26 704-729 3-28 (33)
303 PF00637 Clathrin: Region in C 91.4 0.064 1.4E-06 45.5 0.4 84 101-187 13-96 (143)
304 PRK09687 putative lyase; Provi 91.1 15 0.00032 35.3 26.6 25 673-698 241-265 (280)
305 PF10602 RPN7: 26S proteasome 91.0 2.8 6.1E-05 36.8 10.1 95 567-661 38-139 (177)
306 PF13181 TPR_8: Tetratricopept 90.8 0.54 1.2E-05 27.6 3.9 28 702-729 2-29 (34)
307 COG2976 Uncharacterized protei 90.7 11 0.00023 33.1 14.1 86 409-494 99-189 (207)
308 KOG1550 Extracellular protein 90.5 28 0.0006 37.4 23.2 146 579-729 378-537 (552)
309 PF06552 TOM20_plant: Plant sp 90.5 0.61 1.3E-05 39.9 5.2 33 683-715 51-83 (186)
310 PF13174 TPR_6: Tetratricopept 90.5 0.39 8.6E-06 27.9 3.1 32 669-700 2-33 (33)
311 PF07721 TPR_4: Tetratricopept 90.4 0.4 8.7E-06 26.1 2.8 24 702-725 2-25 (26)
312 PF13431 TPR_17: Tetratricopep 90.3 0.45 9.7E-06 28.1 3.1 32 422-453 2-33 (34)
313 TIGR03504 FimV_Cterm FimV C-te 89.4 0.72 1.6E-05 29.0 3.6 27 705-731 3-29 (44)
314 PF04097 Nic96: Nup93/Nic96; 89.2 38 0.00081 37.0 22.0 39 435-491 416-454 (613)
315 KOG4648 Uncharacterized conser 88.9 1.4 3.1E-05 41.6 6.7 94 572-668 104-199 (536)
316 PF07035 Mic1: Colon cancer-as 88.8 14 0.00031 31.7 14.9 39 117-155 16-54 (167)
317 PF13374 TPR_10: Tetratricopep 88.8 0.82 1.8E-05 28.4 3.8 28 702-729 3-30 (42)
318 PF10602 RPN7: 26S proteasome 88.8 5.3 0.00011 35.1 10.1 94 602-695 38-141 (177)
319 PF09613 HrpB1_HrpK: Bacterial 88.8 4.6 0.0001 34.1 9.0 113 606-722 16-130 (160)
320 COG2909 MalT ATP-dependent tra 88.4 44 0.00096 36.9 25.7 216 508-726 424-684 (894)
321 KOG4570 Uncharacterized conser 88.2 6.1 0.00013 37.2 10.1 99 527-629 57-164 (418)
322 PRK12798 chemotaxis protein; R 88.2 30 0.00065 34.6 21.3 180 547-729 125-323 (421)
323 PF09986 DUF2225: Uncharacteri 88.0 3.4 7.4E-05 37.5 8.6 66 667-732 118-196 (214)
324 PRK15180 Vi polysaccharide bio 87.8 8.4 0.00018 38.5 11.4 142 572-716 296-442 (831)
325 KOG0545 Aryl-hydrocarbon recep 87.7 2.7 5.8E-05 37.9 7.3 100 602-701 180-298 (329)
326 PRK11619 lytic murein transgly 87.7 47 0.001 36.3 41.2 50 643-692 415-464 (644)
327 TIGR02508 type_III_yscG type I 87.5 6.5 0.00014 29.9 8.0 86 110-199 20-105 (115)
328 KOG1550 Extracellular protein 87.2 33 0.00072 36.9 16.8 112 615-731 308-427 (552)
329 KOG4642 Chaperone-dependent E3 87.1 1.9 4E-05 38.7 6.0 83 647-729 22-106 (284)
330 PRK10941 hypothetical protein; 87.0 3.7 8E-05 38.7 8.4 61 670-730 184-244 (269)
331 KOG1308 Hsp70-interacting prot 86.8 0.48 1E-05 44.8 2.4 115 612-728 126-242 (377)
332 COG4455 ImpE Protein of avirul 86.7 2.5 5.4E-05 37.4 6.4 71 638-708 4-79 (273)
333 smart00028 TPR Tetratricopepti 86.2 1.5 3.3E-05 24.7 3.8 25 704-728 4-28 (34)
334 KOG0276 Vesicle coat complex C 86.1 8.8 0.00019 39.7 10.8 97 345-457 649-745 (794)
335 PF04910 Tcf25: Transcriptiona 86.1 18 0.0004 36.1 13.2 59 671-729 107-167 (360)
336 COG4455 ImpE Protein of avirul 86.0 7.5 0.00016 34.6 8.9 126 568-701 4-139 (273)
337 PF14561 TPR_20: Tetratricopep 86.0 2.4 5.2E-05 32.1 5.5 65 663-727 18-85 (90)
338 COG3947 Response regulator con 85.9 3 6.5E-05 38.7 6.8 60 670-729 282-341 (361)
339 PF00637 Clathrin: Region in C 85.8 1.1 2.3E-05 37.9 4.0 86 65-157 12-97 (143)
340 KOG2066 Vacuolar assembly/sort 85.7 58 0.0012 35.4 23.7 30 536-565 507-536 (846)
341 COG0790 FOG: TPR repeat, SEL1 85.6 36 0.00079 33.0 20.1 116 615-733 128-269 (292)
342 TIGR02561 HrpB1_HrpK type III 85.1 21 0.00046 29.8 11.4 52 310-363 23-74 (153)
343 PF11207 DUF2989: Protein of u 84.7 9.1 0.0002 33.8 8.9 72 650-721 121-198 (203)
344 KOG4642 Chaperone-dependent E3 84.6 12 0.00025 34.0 9.6 116 544-661 20-143 (284)
345 KOG3364 Membrane protein invol 84.5 5.1 0.00011 32.5 6.7 72 632-703 29-107 (149)
346 KOG1464 COP9 signalosome, subu 84.4 34 0.00074 31.6 17.4 180 476-655 39-251 (440)
347 PF11207 DUF2989: Protein of u 84.3 13 0.00028 33.0 9.7 73 582-655 123-198 (203)
348 PF06552 TOM20_plant: Plant sp 84.2 3.7 8.1E-05 35.3 6.3 43 683-732 96-138 (186)
349 KOG4570 Uncharacterized conser 83.8 3.8 8.3E-05 38.4 6.6 102 23-125 58-165 (418)
350 cd00923 Cyt_c_Oxidase_Va Cytoc 83.2 8.4 0.00018 29.1 6.9 46 382-427 25-70 (103)
351 COG1747 Uncharacterized N-term 82.7 61 0.0013 33.3 24.0 156 466-628 68-233 (711)
352 PF10579 Rapsyn_N: Rapsyn N-te 82.5 3 6.5E-05 30.1 4.2 49 677-725 16-67 (80)
353 PF02284 COX5A: Cytochrome c o 82.3 9.1 0.0002 29.3 6.9 59 382-440 28-86 (108)
354 KOG2066 Vacuolar assembly/sort 82.3 81 0.0018 34.3 24.0 38 647-687 673-710 (846)
355 COG1747 Uncharacterized N-term 82.3 64 0.0014 33.1 23.2 92 498-593 65-159 (711)
356 KOG4507 Uncharacterized conser 82.1 5.1 0.00011 41.1 7.3 101 611-711 618-720 (886)
357 PF10345 Cohesin_load: Cohesin 81.9 86 0.0019 34.4 34.3 195 26-223 27-252 (608)
358 PF07035 Mic1: Colon cancer-as 81.8 33 0.00072 29.6 15.6 40 217-256 15-54 (167)
359 PF13374 TPR_10: Tetratricopep 81.7 3 6.5E-05 25.7 3.9 28 668-695 3-30 (42)
360 PF14561 TPR_20: Tetratricopep 81.7 17 0.00038 27.5 8.5 41 689-729 10-50 (90)
361 COG2909 MalT ATP-dependent tra 81.3 95 0.0021 34.5 30.7 24 605-628 623-646 (894)
362 PF13170 DUF4003: Protein of u 80.4 58 0.0013 31.5 20.1 135 380-543 78-226 (297)
363 PRK15180 Vi polysaccharide bio 79.9 73 0.0016 32.3 27.2 89 648-736 711-811 (831)
364 smart00028 TPR Tetratricopepti 79.8 3.5 7.5E-05 23.0 3.6 32 668-699 2-33 (34)
365 KOG4507 Uncharacterized conser 78.7 9.8 0.00021 39.2 8.0 133 597-731 568-706 (886)
366 TIGR02508 type_III_yscG type I 78.2 17 0.00036 27.8 7.0 54 35-90 45-98 (115)
367 KOG3364 Membrane protein invol 77.7 23 0.00051 28.9 8.2 65 665-729 30-99 (149)
368 PF02284 COX5A: Cytochrome c o 77.5 31 0.00066 26.6 8.6 59 482-542 28-87 (108)
369 PRK12798 chemotaxis protein; R 77.2 85 0.0018 31.6 17.9 188 539-729 86-285 (421)
370 PHA02875 ankyrin repeat protei 77.0 70 0.0015 33.0 14.4 131 18-157 19-159 (413)
371 PF09670 Cas_Cas02710: CRISPR- 76.9 38 0.00082 34.2 11.8 52 576-628 142-197 (379)
372 KOG2471 TPR repeat-containing 76.6 94 0.002 31.8 14.9 106 609-714 249-382 (696)
373 COG4785 NlpI Lipoprotein NlpI, 76.0 59 0.0013 29.2 18.4 82 411-492 77-161 (297)
374 cd00923 Cyt_c_Oxidase_Va Cytoc 75.8 33 0.00071 26.1 8.5 60 480-541 23-83 (103)
375 PF13762 MNE1: Mitochondrial s 75.7 47 0.001 27.8 9.9 77 32-108 42-128 (145)
376 COG4976 Predicted methyltransf 74.6 5.4 0.00012 35.7 4.4 55 647-701 7-63 (287)
377 cd08819 CARD_MDA5_2 Caspase ac 74.4 15 0.00033 27.3 5.9 66 13-80 21-86 (88)
378 PF09477 Type_III_YscG: Bacter 74.4 30 0.00065 26.9 7.6 80 109-191 20-99 (116)
379 KOG1586 Protein required for f 73.9 71 0.0015 29.1 21.1 22 610-631 164-185 (288)
380 KOG2422 Uncharacterized conser 73.7 1.2E+02 0.0027 31.8 14.8 54 573-628 350-406 (665)
381 KOG4279 Serine/threonine prote 73.5 75 0.0016 34.3 12.7 184 465-701 202-400 (1226)
382 COG5159 RPN6 26S proteasome re 73.1 84 0.0018 29.6 11.9 154 574-727 12-191 (421)
383 smart00386 HAT HAT (Half-A-TPR 73.0 7.8 0.00017 22.0 3.7 29 681-709 1-29 (33)
384 KOG0276 Vesicle coat complex C 72.8 59 0.0013 34.1 11.6 104 542-662 645-748 (794)
385 KOG0376 Serine-threonine phosp 72.8 2.7 5.8E-05 42.1 2.5 100 607-708 11-113 (476)
386 KOG2396 HAT (Half-A-TPR) repea 72.7 1.2E+02 0.0026 31.2 38.3 239 483-729 301-558 (568)
387 KOG2063 Vacuolar assembly/sort 72.0 1.1E+02 0.0024 34.5 14.4 27 536-562 506-532 (877)
388 PF04190 DUF410: Protein of un 71.7 93 0.002 29.5 19.2 159 243-428 2-170 (260)
389 KOG0890 Protein kinase of the 71.7 2.8E+02 0.0061 35.1 34.6 104 602-708 1672-1796(2382)
390 TIGR03504 FimV_Cterm FimV C-te 70.9 11 0.00024 23.8 4.0 25 470-494 5-29 (44)
391 PF10345 Cohesin_load: Cohesin 70.9 1.7E+02 0.0037 32.2 36.4 49 680-728 547-604 (608)
392 KOG0545 Aryl-hydrocarbon recep 70.4 79 0.0017 29.1 10.5 59 671-729 234-292 (329)
393 PHA02875 ankyrin repeat protei 68.3 1.2E+02 0.0025 31.4 13.6 78 71-156 10-91 (413)
394 COG3947 Response regulator con 67.6 1.1E+02 0.0025 28.9 14.1 69 568-638 282-356 (361)
395 KOG0551 Hsp90 co-chaperone CNS 67.3 23 0.0005 33.9 7.0 82 643-724 89-176 (390)
396 PF12862 Apc5: Anaphase-promot 67.2 17 0.00037 27.8 5.4 52 678-729 9-69 (94)
397 PF07720 TPR_3: Tetratricopept 67.2 18 0.0004 21.6 4.3 18 706-723 6-23 (36)
398 PF10579 Rapsyn_N: Rapsyn N-te 66.1 21 0.00045 26.0 5.0 45 578-622 19-65 (80)
399 KOG4077 Cytochrome c oxidase, 65.2 39 0.00085 27.2 6.8 58 382-439 67-124 (149)
400 PF13929 mRNA_stabil: mRNA sta 65.1 1.3E+02 0.0028 28.7 15.6 65 495-559 198-263 (292)
401 KOG0530 Protein farnesyltransf 64.8 1.2E+02 0.0027 28.3 12.3 54 653-706 131-186 (318)
402 PRK10941 hypothetical protein; 64.3 31 0.00068 32.7 7.5 61 642-702 188-250 (269)
403 cd08819 CARD_MDA5_2 Caspase ac 64.0 56 0.0012 24.4 7.0 38 445-483 48-85 (88)
404 COG5159 RPN6 26S proteasome re 63.6 1.3E+02 0.0029 28.3 20.2 160 539-698 130-316 (421)
405 KOG2300 Uncharacterized conser 63.2 1.9E+02 0.004 29.8 34.5 159 571-729 329-513 (629)
406 COG4976 Predicted methyltransf 62.9 12 0.00026 33.6 4.1 50 611-661 6-55 (287)
407 PF13762 MNE1: Mitochondrial s 62.8 92 0.002 26.1 10.2 77 133-209 42-128 (145)
408 PF07163 Pex26: Pex26 protein; 61.9 1.1E+02 0.0024 28.9 10.1 87 471-557 90-181 (309)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 61.8 66 0.0014 26.3 8.1 42 685-726 81-124 (126)
410 KOG2422 Uncharacterized conser 61.3 73 0.0016 33.3 9.7 65 674-738 349-416 (665)
411 PF14853 Fis1_TPR_C: Fis1 C-te 60.7 31 0.00068 22.9 4.9 34 571-606 7-40 (53)
412 PF08424 NRDE-2: NRDE-2, neces 60.7 1.8E+02 0.0039 28.7 15.3 133 563-698 17-185 (321)
413 PRK13342 recombination factor 59.4 2.2E+02 0.0048 29.4 15.1 120 496-633 173-303 (413)
414 KOG2581 26S proteasome regulat 59.3 2E+02 0.0043 28.9 18.0 122 578-699 139-279 (493)
415 COG0735 Fur Fe2+/Zn2+ uptake r 59.3 53 0.0012 27.7 7.4 63 183-246 8-70 (145)
416 PF08424 NRDE-2: NRDE-2, neces 59.2 1.9E+02 0.0041 28.6 14.8 76 551-628 48-130 (321)
417 PF14863 Alkyl_sulf_dimr: Alky 58.2 46 0.00099 27.8 6.6 66 651-719 57-122 (141)
418 KOG3824 Huntingtin interacting 58.0 31 0.00068 32.5 6.1 58 647-704 128-187 (472)
419 KOG2581 26S proteasome regulat 57.6 1E+02 0.0023 30.7 9.6 134 596-731 120-277 (493)
420 smart00777 Mad3_BUB1_I Mad3/BU 57.1 87 0.0019 25.5 7.8 40 686-725 82-123 (125)
421 PF04910 Tcf25: Transcriptiona 57.0 2.2E+02 0.0048 28.6 17.7 55 607-661 110-165 (360)
422 KOG0686 COP9 signalosome, subu 55.9 2.3E+02 0.0049 28.5 14.9 59 435-493 152-216 (466)
423 PF12862 Apc5: Anaphase-promot 54.0 43 0.00093 25.6 5.6 27 671-697 45-71 (94)
424 PRK13800 putative oxidoreducta 54.0 4.1E+02 0.009 30.9 26.4 255 150-427 624-880 (897)
425 PF07163 Pex26: Pex26 protein; 53.8 89 0.0019 29.4 8.1 57 67-123 90-146 (309)
426 PF14669 Asp_Glu_race_2: Putat 53.7 1.6E+02 0.0034 26.0 9.1 165 22-186 1-206 (233)
427 COG5187 RPN7 26S proteasome re 53.6 2E+02 0.0044 27.2 10.4 23 367-389 118-140 (412)
428 KOG2659 LisH motif-containing 53.6 1.6E+02 0.0035 26.9 9.5 93 567-661 28-129 (228)
429 COG5191 Uncharacterized conser 53.5 31 0.00067 32.7 5.3 77 632-708 104-183 (435)
430 PF14689 SPOB_a: Sensor_kinase 52.9 33 0.00072 23.7 4.2 27 602-628 25-51 (62)
431 KOG0686 COP9 signalosome, subu 52.8 1.5E+02 0.0031 29.8 9.7 59 31-89 152-216 (466)
432 PF11846 DUF3366: Domain of un 52.6 46 0.00099 29.8 6.4 20 678-697 155-174 (193)
433 PF10366 Vps39_1: Vacuolar sor 52.5 83 0.0018 24.9 7.0 27 62-88 41-67 (108)
434 PF10255 Paf67: RNA polymerase 52.1 77 0.0017 32.1 8.2 21 641-661 128-148 (404)
435 KOG2396 HAT (Half-A-TPR) repea 52.0 3E+02 0.0064 28.6 30.8 104 596-700 455-564 (568)
436 KOG4077 Cytochrome c oxidase, 51.8 81 0.0018 25.5 6.5 48 660-707 77-124 (149)
437 PF10366 Vps39_1: Vacuolar sor 51.5 83 0.0018 24.9 6.8 28 162-189 40-67 (108)
438 COG2912 Uncharacterized conser 51.4 60 0.0013 30.4 6.8 57 673-729 187-243 (269)
439 KOG0991 Replication factor C, 51.2 2E+02 0.0043 26.4 12.1 45 555-600 229-273 (333)
440 PF11846 DUF3366: Domain of un 51.0 48 0.001 29.7 6.3 52 610-661 118-170 (193)
441 PRK09857 putative transposase; 49.4 97 0.0021 30.0 8.3 64 671-734 210-273 (292)
442 PF04190 DUF410: Protein of un 49.4 2.4E+02 0.0052 26.8 19.0 30 532-561 88-117 (260)
443 smart00638 LPD_N Lipoprotein N 48.4 4E+02 0.0086 29.1 23.3 63 129-193 309-372 (574)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 48.2 1.5E+02 0.0033 24.2 8.3 44 315-358 81-124 (126)
445 KOG3807 Predicted membrane pro 47.1 2.8E+02 0.006 26.9 11.5 117 579-706 230-351 (556)
446 PF10516 SHNi-TPR: SHNi-TPR; 46.9 48 0.001 20.2 3.7 28 702-729 2-29 (38)
447 KOG2300 Uncharacterized conser 46.3 3.6E+02 0.0077 28.0 28.9 119 611-729 334-473 (629)
448 KOG2908 26S proteasome regulat 45.9 2.1E+02 0.0047 27.9 9.5 71 547-617 88-174 (380)
449 PHA02537 M terminase endonucle 45.5 2.5E+02 0.0053 26.0 9.6 107 576-701 94-212 (230)
450 COG5191 Uncharacterized conser 44.9 37 0.0008 32.2 4.4 68 662-729 102-170 (435)
451 KOG0376 Serine-threonine phosp 44.6 58 0.0013 33.2 6.0 103 572-678 11-116 (476)
452 PF11663 Toxin_YhaV: Toxin wit 44.6 35 0.00075 27.9 3.7 21 74-94 109-129 (140)
453 PF11848 DUF3368: Domain of un 43.7 60 0.0013 21.0 4.1 32 107-138 14-45 (48)
454 PF12968 DUF3856: Domain of Un 43.6 1.7E+02 0.0037 23.5 8.6 56 672-727 60-126 (144)
455 KOG4567 GTPase-activating prot 43.4 2.3E+02 0.0049 27.3 9.1 42 182-223 264-305 (370)
456 PF11848 DUF3368: Domain of un 43.3 90 0.002 20.2 5.0 32 172-203 13-44 (48)
457 KOG2062 26S proteasome regulat 43.1 4.9E+02 0.011 28.7 32.6 622 75-732 38-693 (929)
458 KOG4814 Uncharacterized conser 42.9 96 0.0021 32.9 7.3 52 677-728 404-455 (872)
459 KOG0687 26S proteasome regulat 42.3 3.4E+02 0.0073 26.5 12.3 89 370-460 110-208 (393)
460 COG4259 Uncharacterized protei 41.9 1.3E+02 0.0029 23.0 6.0 35 673-707 78-112 (121)
461 KOG0292 Vesicle coat complex C 41.8 2.6E+02 0.0057 31.3 10.4 178 477-697 606-783 (1202)
462 PF13934 ELYS: Nuclear pore co 41.7 2.9E+02 0.0062 25.6 12.7 70 606-679 114-184 (226)
463 COG4259 Uncharacterized protei 41.7 1.6E+02 0.0035 22.6 6.8 45 617-661 54-98 (121)
464 KOG1498 26S proteasome regulat 41.7 3.8E+02 0.0082 26.9 13.0 194 512-732 25-243 (439)
465 TIGR02270 conserved hypothetic 40.9 4.2E+02 0.0091 27.2 23.8 177 129-321 99-276 (410)
466 PLN03025 replication factor C 40.4 2.8E+02 0.0061 27.3 10.4 31 21-53 172-202 (319)
467 PRK13800 putative oxidoreducta 40.3 6.6E+02 0.014 29.3 26.8 257 351-628 622-880 (897)
468 PF09986 DUF2225: Uncharacteri 40.0 3E+02 0.0064 25.2 10.8 30 669-698 167-196 (214)
469 PF08625 Utp13: Utp13 specific 39.8 2.3E+02 0.0049 23.8 10.3 75 272-347 20-94 (141)
470 PF09477 Type_III_YscG: Bacter 39.6 1.9E+02 0.0041 22.8 8.7 49 544-594 50-98 (116)
471 PF11838 ERAP1_C: ERAP1-like C 39.2 3.8E+02 0.0083 26.3 17.9 81 616-696 146-230 (324)
472 PF09868 DUF2095: Uncharacteri 38.9 51 0.0011 25.8 3.6 37 2-39 69-105 (128)
473 PF14689 SPOB_a: Sensor_kinase 38.9 60 0.0013 22.4 3.8 27 567-593 25-51 (62)
474 KOG3824 Huntingtin interacting 38.9 55 0.0012 31.0 4.6 55 610-665 126-181 (472)
475 PF04762 IKI3: IKI3 family; I 38.5 5.1E+02 0.011 30.3 13.0 101 602-727 814-927 (928)
476 KOG2063 Vacuolar assembly/sort 38.4 6.6E+02 0.014 28.8 21.9 28 366-393 506-533 (877)
477 PRK09462 fur ferric uptake reg 38.2 2E+02 0.0043 24.3 7.7 61 186-247 7-68 (148)
478 PRK14956 DNA polymerase III su 38.1 1.7E+02 0.0037 30.6 8.4 88 22-131 195-284 (484)
479 COG0735 Fur Fe2+/Zn2+ uptake r 38.0 1.8E+02 0.0039 24.6 7.3 48 366-413 22-69 (145)
480 COG4941 Predicted RNA polymera 37.9 3.9E+02 0.0084 26.2 9.8 127 574-703 265-401 (415)
481 KOG4521 Nuclear pore complex, 37.7 7.4E+02 0.016 29.1 14.7 120 603-723 986-1124(1480)
482 PF07064 RIC1: RIC1; InterPro 37.7 3.6E+02 0.0078 25.5 13.6 153 537-700 85-253 (258)
483 PF07575 Nucleopor_Nup85: Nup8 37.6 5.7E+02 0.012 27.8 19.4 35 310-350 310-344 (566)
484 KOG2471 TPR repeat-containing 37.3 5E+02 0.011 27.0 23.4 58 669-726 621-680 (696)
485 cd08326 CARD_CASP9 Caspase act 37.2 1.1E+02 0.0023 22.9 5.1 62 14-79 19-80 (84)
486 PRK13341 recombination factor 36.9 6.6E+02 0.014 28.3 16.9 140 494-647 192-345 (725)
487 PF13934 ELYS: Nuclear pore co 36.8 3.4E+02 0.0075 25.0 14.8 101 604-712 80-183 (226)
488 PRK10564 maltose regulon perip 36.5 62 0.0013 30.9 4.6 36 164-199 260-295 (303)
489 KOG1839 Uncharacterized protei 35.8 1.9E+02 0.0041 33.9 8.9 121 609-729 941-1085(1236)
490 PRK10564 maltose regulon perip 35.8 68 0.0015 30.6 4.7 40 264-303 259-298 (303)
491 PRK13342 recombination factor 35.7 5.1E+02 0.011 26.7 17.4 47 367-413 230-279 (413)
492 PF12968 DUF3856: Domain of Un 35.7 2.4E+02 0.0051 22.8 8.4 58 638-695 58-128 (144)
493 KOG1308 Hsp70-interacting prot 35.6 37 0.0008 32.8 3.0 82 576-661 125-208 (377)
494 COG4941 Predicted RNA polymera 35.4 4.4E+02 0.0095 25.9 12.8 109 550-661 272-391 (415)
495 PF03745 DUF309: Domain of unk 34.8 67 0.0015 22.2 3.5 48 70-117 9-61 (62)
496 cd08323 CARD_APAF1 Caspase act 34.4 1.1E+02 0.0025 22.9 4.8 67 8-79 12-78 (86)
497 KOG4567 GTPase-activating prot 33.9 4.5E+02 0.0096 25.5 10.0 44 282-325 263-306 (370)
498 cd00280 TRFH Telomeric Repeat 33.5 2E+02 0.0043 25.3 6.6 67 616-682 85-158 (200)
499 PF11817 Foie-gras_1: Foie gra 33.4 2.1E+02 0.0045 26.9 7.8 53 673-725 184-242 (247)
500 COG4003 Uncharacterized protei 33.1 61 0.0013 23.5 3.0 33 2-35 39-71 (98)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-95 Score=810.95 Aligned_cols=682 Identities=34% Similarity=0.632 Sum_probs=671.3
Q ss_pred CCCccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHH
Q 004632 57 EPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSI 136 (741)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (741)
.|+..++|.++.+|++.|++++|..+|+.|.+.|+.|+..+|..++.+|.+.+.++.+.+++..+.+.+..++..+++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHH
Q 004632 137 LCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPAR 216 (741)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 216 (741)
+..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004632 217 SIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN 296 (741)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 296 (741)
+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|+.+|+.+||.+|.+|++.|++++|+++|++|...|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHH
Q 004632 297 LITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYAR 376 (741)
Q Consensus 297 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 376 (741)
..||+.++.+|++.|+.+.+.+++..+.+.|+. ++..+++.|+.+|++.|++++|.++|+++..||..+||.+|.+|++
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 999999999999999999999999999999998 6889999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHH
Q 004632 377 KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLL 455 (741)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 455 (741)
.|++++|+++|++|.+.|+.||..||..++.+|++.|+++.+.++++.+.+.|..++. +++.++.+|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888 999999999999999999999
Q ss_pred HHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCch
Q 004632 456 FERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIY 535 (741)
Q Consensus 456 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 535 (741)
|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999986 599999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 004632 536 IDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGS 615 (741)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 615 (741)
++++++++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632 616 VEEGKFYFNAMR-IFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELS 694 (741)
Q Consensus 616 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 694 (741)
+++|.++|+.|. +.|+.|+..+|+.++++|.+.|++++|.+++++|+..|+..+|.+|+.+|..+|+.+.++...+++.
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCCCcCC
Q 004632 695 VTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGYSTI 741 (741)
Q Consensus 695 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 741 (741)
++.|+++..|..|+++|...|+|++|.++++.|+++|++|+||+|||
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999997
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-85 Score=733.27 Aligned_cols=629 Identities=30% Similarity=0.559 Sum_probs=610.4
Q ss_pred ccccc---cchHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHH
Q 004632 3 LFRSC---TNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEES 79 (741)
Q Consensus 3 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 79 (741)
|++.| +.++.+.++|..+++.|..|++.++|+|+..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|
T Consensus 92 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A 171 (857)
T PLN03077 92 LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171 (857)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHH
Confidence 56677 678888999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCC
Q 004632 80 ILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSR 159 (741)
Q Consensus 80 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (741)
+.+|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|++|
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 251 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHH
Q 004632 160 DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIV 239 (741)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 239 (741)
|..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.++.
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHH
Q 004632 240 MYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSV 319 (741)
Q Consensus 240 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 319 (741)
+|++.|++++|.++|++|..+|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH
Q 004632 320 HCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS 399 (741)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 399 (741)
++.+.+.|+. ++..+++.|+.+|.+.|++++|.++|+++.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||.
T Consensus 412 ~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~ 489 (857)
T PLN03077 412 HELAERKGLI-SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS 489 (857)
T ss_pred HHHHHHhCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence 9999999998 78899999999999999999999999999999999999999999999999999999999986 599999
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcC
Q 004632 400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNG 478 (741)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 478 (741)
.||..++.+|++.|.++.+.+++..+.+.+...+. +++.++.+|+++|++++|..+|+.+ .+|..+||++|.+|++.|
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHG 568 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcC
Confidence 99999999999999999999999999999998888 9999999999999999999999999 899999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHH-HcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 004632 479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLI-SYGVRKDIYIDTALTDMYAKCGDLQTAQRVF 557 (741)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (741)
+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~ 648 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7899999999999999999999999999999
Q ss_pred HhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc
Q 004632 558 DSMS-ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDL 635 (741)
Q Consensus 558 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 635 (741)
++|. +||..+|++|+.+|...|+.+.+....+++.+ +.|+.. .|..+.+.|...|+|++|.++.+.|++.|+.+++
T Consensus 649 ~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 9996 79999999999999999999999999999998 778655 6666777999999999999999999999988775
Q ss_pred c
Q 004632 636 Q 636 (741)
Q Consensus 636 ~ 636 (741)
.
T Consensus 727 g 727 (857)
T PLN03077 727 G 727 (857)
T ss_pred C
Confidence 4
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-67 Score=569.84 Aligned_cols=481 Identities=32% Similarity=0.530 Sum_probs=470.6
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHH
Q 004632 260 RCTTSWTAMISCYNRSGWFQKALESFVKMLEVK-EEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPA 338 (741)
Q Consensus 260 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 338 (741)
.+..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|.+.++.+.+.+++..+.+.|+. ++..+++.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHHH
Confidence 466689999999999999999999999999864 7899999999999999999999999999999999998 47899999
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHH
Q 004632 339 LIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLG 418 (741)
Q Consensus 339 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 418 (741)
++.+|.+.|+++.|.++|+++.+||..+||.++.+|++.|++++|+++|++|.+.|+.||..||..++.+|...|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004632 419 LQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEM 497 (741)
Q Consensus 419 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 497 (741)
.+++..+.+.+..++. +++.++.+|+++|++++|.++|++|..+|..+||.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999988887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 004632 498 DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGM 577 (741)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 577 (741)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++++|++.|++++|.++|++|.+||..+|++||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChHHHHH
Q 004632 578 HGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFK 656 (741)
Q Consensus 578 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (741)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 7999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCC
Q 004632 657 MIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVP 736 (741)
Q Consensus 657 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 736 (741)
++++++..|+..+|+.++.+|..+|+++.|..+++++.+..|++...|..|+++|.+.|++++|.+++++|+++|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 004632 737 GYSTI 741 (741)
Q Consensus 737 ~~~~~ 741 (741)
|+|||
T Consensus 564 g~s~i 568 (697)
T PLN03081 564 ACTWI 568 (697)
T ss_pred CeeEE
Confidence 99996
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-65 Score=553.91 Aligned_cols=536 Identities=14% Similarity=0.181 Sum_probs=482.1
Q ss_pred CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCC-CCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHH
Q 004632 91 ATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGF-DKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIA 169 (741)
Q Consensus 91 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 169 (741)
..++...|..++..+++.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..|+..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346677899999999999999999999999999996 5677788899999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHH
Q 004632 170 SYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLS 249 (741)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 249 (741)
+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHhhccCChhhHHHHHHHH
Q 004632 250 AERTFVKIEK----RCTTSWTAMISCYNRSGWFQKALESFVKMLE--VKEEPNLITLITVLGSCAGLGWLREGKSVHCQI 323 (741)
Q Consensus 250 A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 323 (741)
|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.+|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999854 7888999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 004632 324 IRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVA 403 (741)
Q Consensus 324 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 403 (741)
.+.|+.| +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 606 ~e~gi~p--------------------------------~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 606 HEYNIKG--------------------------------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred HHcCCCC--------------------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9998876 78889999999999999999999999999999999999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhcc----CCCchHHHHHHHHHHhcC
Q 004632 404 SSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQ----QKSVVMWNSMICGFYQNG 478 (741)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g 478 (741)
.++.+|++.|++++|.++++.+.+.+..++. +|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999988777 99999999999999999999999985 579999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 004632 479 NSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFD 558 (741)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (741)
++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++++.++. +++++|..+.+
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~ 811 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGE 811 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999987654 24555555544
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH
Q 004632 559 SMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY 638 (741)
Q Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 638 (741)
.+.. |+. .......+..+.|..+|++|.+.|+.||..||+.++.+++..+....+..+++.|...+..|+..+|
T Consensus 812 ~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y 885 (1060)
T PLN03218 812 PVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL 885 (1060)
T ss_pred hhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence 3321 110 1111122345679999999999999999999999998888999999999999998888888899999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 004632 639 ACMVDLLSRSGDIEGAFKMIHSM---PFPANGS 668 (741)
Q Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~ 668 (741)
+.+++++.+ ..++|..++++| +..|+..
T Consensus 886 ~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 886 STLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 999998843 246899999999 5555543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-65 Score=553.27 Aligned_cols=530 Identities=15% Similarity=0.183 Sum_probs=422.7
Q ss_pred CCChhhhHHHHHHHHccCChhhHHHhhccCCCCCc-----cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 004632 26 HYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDS-----FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPS 100 (741)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 100 (741)
.++...|..++..|++.|++++|+++|+.|+.++. .+++.++.+|.+.|..++|+.+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 46777888888888888999999999988876443 4556677778888888888888888863 88888999
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCC----CCCceeHHHHHHHHHhCCC
Q 004632 101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT----SRDVVSWSSIIASYFDNAD 176 (741)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~ 176 (741)
++.+|++.|+++.|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999888888898899999999999999999999988887 4788889999999999999
Q ss_pred hhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 004632 177 VSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLR--RKIKIDGPLGNSFIVMYSKCGDLLSAERTF 254 (741)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 254 (741)
+++|+++|+.|...|+.||..||+.+|.+|++.|++++|.++++.|.+ .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998888889999999999999999999999999988876 578888889999999999999999999999
Q ss_pred hccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCC
Q 004632 255 VKIEK----RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGP 330 (741)
Q Consensus 255 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 330 (741)
+.|.+ ++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~- 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK- 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence 88875 4557899999999999999999999999999899999999999999999999999999999999988887
Q ss_pred CcchHHHHHHHHHHhcCChHHHHHHHHhcC----CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004632 331 EYDYLGPALIEFYAECGKMSECEKVIHAIG----ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSL 406 (741)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 406 (741)
++..+++.++.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..||..++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 677788888888888888888888888874 5899999999999999999999999999999999999999999999
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHH
Q 004632 407 SACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAIN 485 (741)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 485 (741)
.+|++.|+++.|.+++..+.+.+..++. +++.++.+|.+ .++++..+.+.+.. |+. .......+..+.|+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHHHH
Confidence 9999999999999999999999988777 77777755432 34444433322211 100 000111122344666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH
Q 004632 486 LFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNV 565 (741)
Q Consensus 486 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 565 (741)
+|++|.+.|+.||..||+.++.+++..+....+..+++.|...+.. |+.
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~-------------------------------~~~ 882 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS-------------------------------QKQ 882 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC-------------------------------cch
Confidence 6666666666666666666665444444444444444433333333 455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004632 566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV 601 (741)
Q Consensus 566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 601 (741)
.+|++++.++.+ ..++|..++++|.+.|+.|+..
T Consensus 883 ~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 666777776632 2468999999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-63 Score=538.89 Aligned_cols=473 Identities=24% Similarity=0.420 Sum_probs=458.2
Q ss_pred CCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHH
Q 004632 158 SRDVVSWSSIIASYFDNADVSEGLKMFHSMVREG-VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNS 236 (741)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (741)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577799999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhH
Q 004632 237 FIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREG 316 (741)
Q Consensus 237 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 316 (741)
++.+|++.|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 004632 317 KSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLM 396 (741)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 396 (741)
.+++..+.+.|+. ++..+++.|+.+|++.|++++|.++|+.+.++|+.+||.++.+|++.|++++|+++|++|.+.|+.
T Consensus 244 ~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999998 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHH
Q 004632 397 PDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFY 475 (741)
Q Consensus 397 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 475 (741)
||..||+.++.+|++.|+++.|.+++..+.+.+..++. +++.++.+|+++|++++|.++|++|.++|..+||++|.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999988777 99999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHH-cCCCCCchhHHHHHHHHHhcCCHHHHH
Q 004632 476 QNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLIS-YGVRKDIYIDTALTDMYAKCGDLQTAQ 554 (741)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 554 (741)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999975 799999999999999999999999999
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 004632 555 RVFDSMS-ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVE 632 (741)
Q Consensus 555 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 632 (741)
++++++. .|+..+|++++.+|+..|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+.|+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999997 69999999999999999999999999999986 6775 569999999999999999999999999998875
Q ss_pred C
Q 004632 633 P 633 (741)
Q Consensus 633 ~ 633 (741)
.
T Consensus 561 k 561 (697)
T PLN03081 561 M 561 (697)
T ss_pred c
Confidence 4
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.4e-42 Score=396.43 Aligned_cols=707 Identities=12% Similarity=0.029 Sum_probs=377.4
Q ss_pred cchHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHH
Q 004632 8 TNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYH 84 (741)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 84 (741)
+.+..+...+.++++.. +.++..+..+...+...|++++|..+++++.. | +...|..+...+...|++++|...|+
T Consensus 139 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 139 GQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77888888888887654 23566777888888888888888888887643 3 45667777778888888888888888
Q ss_pred HHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC--CC-c
Q 004632 85 KMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS--RD-V 161 (741)
Q Consensus 85 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~ 161 (741)
+..+.. +.+..++..+...+...|++++|...++.+.+.... +..........+...|++++|...|++..+ |+ .
T Consensus 218 ~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 295 (899)
T TIGR02917 218 KAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295 (899)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch
Confidence 887654 345556777777778888888888888887776532 233333333444566777777777666543 21 1
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 004632 162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMY 241 (741)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 241 (741)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...+..+.+... .+...+..+...+
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 373 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAY 373 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 122333344555666666666666555432 22333444455555555666666655555554432 2344455555555
Q ss_pred HhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC--------------------------
Q 004632 242 SKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVK-------------------------- 292 (741)
Q Consensus 242 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-------------------------- 292 (741)
.+.|++++|.+.|+++.. .+...+..+...+...|++++|++.++.+.+..
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 555666666655555433 122344444445555555555555555544432
Q ss_pred -------CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---C
Q 004632 293 -------EEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---R 362 (741)
Q Consensus 293 -------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 362 (741)
.+++..++..+...+...|++++|...++++.+.. |.+...+..++..+...|++++|.+.++++.. .
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 531 (899)
T TIGR02917 454 AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531 (899)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC
Confidence 12233444444444445555555555555444432 34444444445555555555555555544421 2
Q ss_pred CcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004632 363 NILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDM 442 (741)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (741)
+..++..+...+.+.|++++|...++++...+ +.+...+..+...+...|++++|..+++.+.+..+.+...+..++.+
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 33344444445555555555555555544431 22333344444445555555555555555554444444455555555
Q ss_pred HHhcCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632 443 YSKCGFKNLAYLLFERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK 519 (741)
Q Consensus 443 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 519 (741)
+...|++++|...|+.+.+ .++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544432 133344445555555555555555555554431 223444445555555555555555
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004632 520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK 597 (741)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 597 (741)
.+++.+.+.. +.+...+..+...+...|++++|...|+.+.+ |+..++..++.++...|++++|.+.++++.+. .
T Consensus 690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~ 766 (899)
T TIGR02917 690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--H 766 (899)
T ss_pred HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 5555554443 22334444455555555555555555555442 33344444555555555555555555555542 2
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 004632 598 P-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALL 674 (741)
Q Consensus 598 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~ 674 (741)
| +...+..+...|...|++++|.+.|+++.+.. +.+...+..++..+...|+ .+|+.+++++ ..+.++..+..++
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 2 23344444455555555555555555555432 2334455555555555555 4455555554 1223344444555
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
..+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555555555543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8e-42 Score=393.32 Aligned_cols=713 Identities=13% Similarity=0.075 Sum_probs=504.6
Q ss_pred cchHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHH
Q 004632 8 TNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYH 84 (741)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 84 (741)
+.+..+...+.+.....-..+...+..+...+.+.|++++|...|+++.+ | +...|..+...+...|++++|..+++
T Consensus 104 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 104 GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 78888888887665444445677889999999999999999999998754 4 45678889999999999999999999
Q ss_pred HHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC--C-Cc
Q 004632 85 KMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS--R-DV 161 (741)
Q Consensus 85 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~ 161 (741)
++.+.. +++...+..+...+...|+++.|...++...+.. +.+..++..+...+...|++++|...++.+.+ | +.
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 998764 4566678888899999999999999999998876 45677888889999999999999999998864 2 22
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 004632 162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMY 241 (741)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 241 (741)
..+......+...|++++|...|+.+.+.+.. +...+..+...+...|+++.|...++.+.+..+ .+...+..+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 23333444567799999999999999876422 223344555667789999999999999988754 3566777888999
Q ss_pred HhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632 242 SKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS 318 (741)
Q Consensus 242 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 318 (741)
.+.|++++|...++.+.. .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.|..
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHH
Confidence 999999999999998765 345578889999999999999999999998753 2244566666777777888888888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCC-
Q 004632 319 VHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWG- 394 (741)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g- 394 (741)
.++.+.+.. |........++..+.+.|++++|..+++.+.. .+...|..+...+...|++++|.+.|+++.+..
T Consensus 419 ~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 496 (899)
T TIGR02917 419 DLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496 (899)
T ss_pred HHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence 877776654 34444444555555555555555555555432 233445555555555555555555555554421
Q ss_pred --------------------------------CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004632 395 --------------------------------LMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDM 442 (741)
Q Consensus 395 --------------------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (741)
.+.+..++..+...+...|+.++|...+..+.+.++.....+..++..
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 112233333344444444444444444444444444433344445555
Q ss_pred HHhcCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632 443 YSKCGFKNLAYLLFERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK 519 (741)
Q Consensus 443 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 519 (741)
|...|++++|...++.+.. .++..|..+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554432 233455555666666666666666666655432 233445555555566666666666
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004632 520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGI 596 (741)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 596 (741)
..++.+.+.. +.+...+..++..+...|++++|..+++.+.+ ++...+..+...+...|++++|.+.|+++.+ .
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~ 732 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--R 732 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 6666665543 22345555666666666666666666666552 3455666677777778888888888888777 4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 004632 597 KPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALL 674 (741)
Q Consensus 597 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~ 674 (741)
.|+..++..+..++...|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.|+++ ..|++..++..++
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 811 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLA 811 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5665667777778888888888888888887743 346777888888888889999999888887 4566778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632 675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK 733 (741)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 733 (741)
..+...|+ ++|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+..
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888 77999999999999999988999999999999999999999998886643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-28 Score=281.91 Aligned_cols=643 Identities=9% Similarity=-0.009 Sum_probs=442.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhh---------
Q 004632 63 WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQ--------- 133 (741)
Q Consensus 63 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 133 (741)
.-..++.+...++.+.|...++++.... +-++..+..++..+...|+.++|.+.++.+.+... .+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhc
Confidence 4455567788889999999999887653 33556778888888899999999999999988763 222221
Q ss_pred -------hHHHHHhHhcCChhHHHHHHccCCCCCceeHH----HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHH
Q 004632 134 -------TSILCTYGEFGCLDDARKVFDKMTSRDVVSWS----SIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSL 202 (741)
Q Consensus 134 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 202 (741)
..+...+.+.|++++|.+.|++..+.++.... .+.......|+.++|++.|+++.... +-+...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 12223455556666666666655432111111 01111122356666666666665542 2233344455
Q ss_pred HHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHH
Q 004632 203 AEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKAL 282 (741)
Q Consensus 203 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 282 (741)
...+...|+.++|...++.+.+.... +..............+....+. ..+...+..+-.......|.
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~-----------~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASV-----------AALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhH-----------HHHHHHHHHCCCchHHHHHH
Confidence 55555556666666666555442110 0000000000000001111111 11222222222223345566
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC-
Q 004632 283 ESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE- 361 (741)
Q Consensus 283 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 361 (741)
..+..+......|+... ......+...|++++|...+++.++.. |.+..++..+..++.+.|++++|+..|++..+
T Consensus 256 ~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66665544333333322 123455677899999999999998865 78888999999999999999999999988753
Q ss_pred -CCc---ccHH------------HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 004632 362 -RNI---LSWN------------MLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHV 425 (741)
Q Consensus 362 -~~~---~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 425 (741)
|+. ..|. .....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+.+
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 321 1121 22446778999999999999999862 334556667778899999999999999999
Q ss_pred HHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCC------------chHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004632 426 IKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKS------------VVMWNSMICGFYQNGNSLEAINLFHQMYLN 493 (741)
Q Consensus 426 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 493 (741)
++..+....++..+...|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+.
T Consensus 412 L~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 412 LRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9998887777777888775 467899999988765421 123455677788999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCC----CH----
Q 004632 494 CLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSER----NV---- 565 (741)
Q Consensus 494 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---- 565 (741)
. +-+...+..+...+.+.|++++|...++.+.+..+. ++..+..+...+...++.++|...++.+... +.
T Consensus 491 ~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 491 D-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 3 234667778888999999999999999999875533 4444555555677899999999999988632 11
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH
Q 004632 566 -----VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC 640 (741)
Q Consensus 566 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 640 (741)
..+..+...+...|+.++|..+++. ..++...+..+...+.+.|++++|+..|+++.+.. +.+...+..
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~ 642 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLG 642 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 1123456678899999999999872 23355577778889999999999999999999854 335778889
Q ss_pred HHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHh
Q 004632 641 MVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN------GYYTLLSNIYA 712 (741)
Q Consensus 641 l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~ 712 (741)
++.+|...|++++|.+.++.. . .+.+...+..+..++...|++++|.+.+++++...|+++ .++..++.++.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999988 3 344566778888889999999999999999999877654 36777899999
Q ss_pred hcCChHHHHHHHHHHHh-CCCc
Q 004632 713 EEGNWDEFGKVRSIMEV-TGLK 733 (741)
Q Consensus 713 ~~g~~~~A~~~~~~~~~-~~~~ 733 (741)
..|++++|++.|++.+. .|+.
T Consensus 723 ~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 723 QTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HcCCHHHHHHHHHHHHhhcCCC
Confidence 99999999999999865 4453
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-27 Score=271.84 Aligned_cols=626 Identities=10% Similarity=0.049 Sum_probs=389.3
Q ss_pred HHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH-----------
Q 004632 33 TRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIY----------- 98 (741)
Q Consensus 33 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----------- 98 (741)
-..++.....++.+.|...++++.. | |...+..++..+.+.|+.++|...++++.+.. |+...+
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcC
Confidence 3445556666666666666665432 3 34555666666666666666666666665543 222111
Q ss_pred ------HHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhh-hhHHHHHhHhcCChhHHHHHHccCCC--C-CceeHHHHH
Q 004632 99 ------PSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVI-QTSILCTYGEFGCLDDARKVFDKMTS--R-DVVSWSSII 168 (741)
Q Consensus 99 ------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li 168 (741)
..+.+.+...|++++|...++.+.+.+ +|+... ...........|+.++|.+.++++.+ | +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 222345566666666666666666543 222211 11111112234666666666666654 2 233455555
Q ss_pred HHHHhCCChhHHHHHHHHhHHCC------------------CCCC-hhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 004632 169 ASYFDNADVSEGLKMFHSMVREG------------------VEPD-FVTMLSLAEACGELCSLRPARSIHGHVLRRKIKI 229 (741)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~------------------~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (741)
..+...|++++|+..++++.... ..++ ...+...+..+-.....+.+...+....+....|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 56666666666666666654321 1111 1112222222222233444555555544443334
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHH----
Q 004632 230 DGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN-LITLI---- 301 (741)
Q Consensus 230 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~---- 301 (741)
+... ......+...|++++|+..|++... .+...+..+...+.+.|++++|+..|++..+...... ...+.
T Consensus 269 ~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 3222 2334567778899999999888654 3456788888888899999999999988877533221 11111
Q ss_pred --------HHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcccHHHH
Q 004632 302 --------TVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE--R-NILSWNML 370 (741)
Q Consensus 302 --------~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l 370 (741)
.....+.+.|++++|...++++++.. |.+...+..+..++...|++++|++.|++... | +...+..+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12335567788888888888888765 67777778888888888888888888887653 2 33445555
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCC--------CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHH
Q 004632 371 ISEYARKGMSKEALELLVQMQTWGLM--------PDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDM 442 (741)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 442 (741)
...+. .+++++|+.+++.+...... .....+......+...|++++|.+.++.+++..|.+..++..+...
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55553 45678888777665332100 0011233344456667777777777777777777666666677777
Q ss_pred HHhcCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632 443 YSKCGFKNLAYLLFERIQQ--K-SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK 519 (741)
Q Consensus 443 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 519 (741)
|.+.|++++|...++++.+ | ++..+..+...+...+++++|+..++.+......++...+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~---------------- 568 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA---------------- 568 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH----------------
Confidence 7777777777777766543 2 33334444444556677777777666543221111111000
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004632 520 WVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN 599 (741)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 599 (741)
..+ ....+......+...|+.++|..+++. ..++...+..+...+.+.|++++|+..|+++.+ ..|+
T Consensus 569 ---~~l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~ 635 (1157)
T PRK11447 569 ---QRL-------QSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPG 635 (1157)
T ss_pred ---HHH-------hhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 000 001123455677889999999999984 234556777888899999999999999999999 5675
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-C---CC---CHHHH
Q 004632 600 -EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-F---PA---NGSIW 670 (741)
Q Consensus 600 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~---~~---~~~~~ 670 (741)
...+..+...+...|++++|++.++.+.+.. +.+...+..++.++...|++++|.++++++ . . +| +...+
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVL 714 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHH
Confidence 5588888899999999999999999887632 234566777888999999999999999998 2 1 22 22456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
..+...+...|++++|+..|++++.
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888999999999999999984
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=9.4e-26 Score=245.22 Aligned_cols=627 Identities=9% Similarity=-0.017 Sum_probs=368.9
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHH
Q 004632 74 NFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVF 153 (741)
Q Consensus 74 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 153 (741)
|++++|+..|++..+.. +-+..++..+...+...|++++|+..+++..+... .|...+..+ .. .+++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~---i~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AA---IPVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HH---hccChhHHHHH
Confidence 66666666666666543 12244556666666666666666666666665531 222222222 11 16666666666
Q ss_pred ccCCC--CC-ceeHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCChhhHHHH-HHHhcccCChhhHHHHHHH
Q 004632 154 DKMTS--RD-VVSWSSIIAS--------YFDNADVSEGLKMFHSMVREGVEPDFVTMLSL-AEACGELCSLRPARSIHGH 221 (741)
Q Consensus 154 ~~~~~--~~-~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~ 221 (741)
+++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+.+.|+++.|..++..
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 66643 32 2222222222 3333 34444443 2222223333333333 5666666666666666666
Q ss_pred HHHhcCCCchHHHHHHHHHHHh-cCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CChhh
Q 004632 222 VLRRKIKIDGPLGNSFIVMYSK-CGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEE-PNLIT 299 (741)
Q Consensus 222 ~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t 299 (741)
+.+.++.. ......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.+.++++...-.. |...+
T Consensus 208 L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 208 ARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 66665332 3334455556665 355 66666665544456667777777777777777777777776654322 55555
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHH--HHc
Q 004632 300 LITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEY--ARK 377 (741)
Q Consensus 300 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~ 377 (741)
+..++.-..... ..+..-+.. ...++-......++..+.+.++++.++++.. ....+. . ..++.. ...
T Consensus 286 ~~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~ 355 (987)
T PRK09782 286 WLYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVAT 355 (987)
T ss_pred HHHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhcccc
Confidence 544433222111 111111111 1111222333445777788888887776633 222222 1 222222 233
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC---cchhHHHHHHHHHhcCC---HHH
Q 004632 378 GMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK---DEFVQSSLIDMYSKCGF---KNL 451 (741)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~---~~~ 451 (741)
+...++...+..|.+. .+-+......+.-.....|+.++|.+++......... +..+...++..|.+.+. ...
T Consensus 356 ~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 5666666666666654 1224444444444456777888888888877764221 12255577777777665 222
Q ss_pred HHHH-------------------------HHhccC---C--CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004632 452 AYLL-------------------------FERIQQ---K--SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT 501 (741)
Q Consensus 452 a~~~-------------------------~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 501 (741)
+..+ +..... + +...|..+..++.. +++++|+..+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222 111111 1 34556666666665 7777788877776654 355544
Q ss_pred HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhc
Q 004632 502 FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERN---VVSWSAMIDCYGMH 578 (741)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~ 578 (741)
...+...+...|++++|...++.+... +|+...+..+...+.+.|++++|...+++..+.+ ...+..+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 444455556788888888888876543 2333445556667777888888888887776422 22222333334445
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHH
Q 004632 579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658 (741)
Q Consensus 579 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (741)
|++++|...+++..+ ..|+...+..+..++.+.|++++|+..++++.+.. +.+...+..++.++...|++++|++.+
T Consensus 590 Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888887 56776677777778888888888888888887743 234567777777888888888888888
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 659 HSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 659 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
++. ..|.+...+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.|.+-+++...-.
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 877 3455677778888888888888888888888888888888888888888888888888888777655433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.3e-23 Score=228.75 Aligned_cols=665 Identities=10% Similarity=0.015 Sum_probs=446.9
Q ss_pred HHHHHHHHHHhCCCC--ChhhhHHHHH--HHHccCChhhHHHhhccCCC--CC-ccchHHHHHHHHhcCChhHHHHHHHH
Q 004632 13 LTRLHAHLLVTGLHY--DPPASTRLIE--SYAEMGSLRSSRLVFDTFKE--PD-SFMWAVLIKCYMWNNFFEESILLYHK 85 (741)
Q Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 85 (741)
+..+.....+.++.| .-.++-.++. .+...|++++|...|+...+ |+ ..++..+.+.|...|++++|+..+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~k 103 (987)
T PRK09782 24 ADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLED 103 (987)
T ss_pred hhhcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333444445555543 1122233333 33444999999999998764 54 56788899999999999999999999
Q ss_pred HHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHH--------hHhcCChhHHHHHHccCC
Q 004632 86 MIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCT--------YGEFGCLDDARKVFDKMT 157 (741)
Q Consensus 86 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~ 157 (741)
..+. .|+...|..++..+ ++..+|..+++++.+.. +.+..++..+... |.+.+....+++ ....
T Consensus 104 Av~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~ 175 (987)
T PRK09782 104 QLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF 175 (987)
T ss_pred HHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh
Confidence 9876 45555555444333 88899999999999886 3334455555554 777766666666 3333
Q ss_pred CCC--ceeHHHH-HHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcc-cCChhhHHHHHHHHHHhcCCCchHH
Q 004632 158 SRD--VVSWSSI-IASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGE-LCSLRPARSIHGHVLRRKIKIDGPL 233 (741)
Q Consensus 158 ~~~--~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (741)
.|+ ....... ...|.+.|++++|+++++++.+.+.. +..-...+-.++.. .++ +.+..++.. .++.+..+
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l 249 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQS 249 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHH
Confidence 343 3333444 88999999999999999999988633 33334555556665 355 666666442 44578899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC-----CCcchHH------------------------------HHHHHHHhcCCh
Q 004632 234 GNSFIVMYSKCGDLLSAERTFVKIEK-----RCTTSWT------------------------------AMISCYNRSGWF 278 (741)
Q Consensus 234 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~------------------------------~li~~~~~~~~~ 278 (741)
+..+...|.+.|+.++|.++++++.. +...+|- .++..+.+.+++
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999998864 1111221 123344444555
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHh
Q 004632 279 QKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358 (741)
Q Consensus 279 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (741)
+.+.++. ++.|.......-..+....+...++......+.+.. |.+......+.-.....|+.++|..+|+.
T Consensus 330 ~~~~~~~------~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 330 DAAQKLL------ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHHHHHh------cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5333331 123333322111112223355566666666666553 45666666666667777777777777776
Q ss_pred cCC--CCc----ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHH---HHHHHHhc
Q 004632 359 IGE--RNI----LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQI---HGHVIKID 429 (741)
Q Consensus 359 ~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~ 429 (741)
..+ ++. ..-+-++..|.+.+......+...-. -+++..+- |.-.|+...+... +..++...
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc----cccccchh------HHHHhhhhhhhhhHHHHHHhcccC
Confidence 543 111 12335566666665533222221111 11111111 1122333333333 33333444
Q ss_pred CC--cchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHH--HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004632 430 CK--DEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMI--CGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTA 505 (741)
Q Consensus 430 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 505 (741)
+. ...++..+..++.. ++.++|...+.+.....+..++.+. ..+...|++++|...|+++... +|+...+..+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 44 44488888888887 7888899977766554344444443 4446899999999999997654 4555556677
Q ss_pred HHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHH
Q 004632 506 IQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLND 583 (741)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 583 (741)
...+.+.|+.+.|...++...+..+. ....+..+.......|++++|...+++..+ |+...|..+..++.+.|++++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHH
Confidence 77888999999999999999876532 223333333444456999999999999884 888899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-
Q 004632 584 AASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM- 661 (741)
Q Consensus 584 A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 661 (741)
|+..+++..+ ..|+.. .+..+..++...|++++|+..++++.+.. +-+...+..++.++...|++++|+..+++.
T Consensus 628 A~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999 678655 67777778999999999999999999853 335778889999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCh
Q 004632 662 PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNW 717 (741)
Q Consensus 662 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 717 (741)
...| +..+............+++.+.+.+++....+|... +....+.++...+++
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 4445 456777788888889999999999999999999877 777777777766665
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-23 Score=197.85 Aligned_cols=443 Identities=13% Similarity=0.094 Sum_probs=352.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Q 004632 265 WTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYA 344 (741)
Q Consensus 265 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 344 (741)
...|..-..+.|++.+|.+.-...-..+ +.+..+...+-..+.+..+++.....-....+.. |.-...+..+.+++.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHH
Confidence 3445555666677777766544332221 1112222222233344444444433333333322 556677777888888
Q ss_pred hcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCChHHHHH
Q 004632 345 ECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSA-CGNVGSLQLGLQ 420 (741)
Q Consensus 345 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~ 420 (741)
..|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.- ....|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888877653 3467888999999999999999999998886 57777665554444 456899999999
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004632 421 IHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEM 497 (741)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 497 (741)
.|.++++..+....+|+.+...+..+|+...|+..|++...-|+ ..|-.|...|...+.+++|+..|.+.... .|
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 99999999998888999999999999999999999999877554 57888999999999999999999987764 55
Q ss_pred C-HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHH
Q 004632 498 D-EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMID 573 (741)
Q Consensus 498 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 573 (741)
+ ...+..+...|...|+.+.|+..+++.++..+. -+..|+.+..++-..|++.+|...+++... | ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 5 567778888889999999999999999886543 467899999999999999999999998874 3 4678899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCCh
Q 004632 574 CYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDI 651 (741)
Q Consensus 574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 651 (741)
.|...|.++.|..+|....+ +.|... .++.|...|-++|++++|+..++++++ +.|+ ...|+.++..|-..|+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999999 889865 889999999999999999999999987 5666 78899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 004632 652 EGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDE 719 (741)
Q Consensus 652 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 719 (741)
+.|++.+.++ ...| -......|...+..+|+.++|+..|+.++++.|+.+.++..|+.++--.-+|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999998 4444 577899999999999999999999999999999999999999877654444443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.4e-23 Score=197.98 Aligned_cols=419 Identities=12% Similarity=0.124 Sum_probs=350.6
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHc
Q 004632 301 ITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARK 377 (741)
Q Consensus 301 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 377 (741)
..+..-..+.|++.+|++.-...-... |.+......+..++....++++....-.... .....+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334445567788888887765554443 3444444555566666666666544332222 23456899999999999
Q ss_pred CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHH
Q 004632 378 GMSKEALELLVQMQTWGLMP-DSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLF 456 (741)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 456 (741)
|++++|+..++.+.+. +| ....|..+..++...|+.+.|.+.+..+++.+|..-.+.+.+.......|+.++|...+
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999999985 55 45678888889999999999999999999999887778888889999999999999999
Q ss_pred HhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCC
Q 004632 457 ERIQQKS---VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMD-EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRK 532 (741)
Q Consensus 457 ~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 532 (741)
.+..+.+ .+.|+.|...+...|+...|++.|++..+ +.|+ ...|..+...|...+.++.|...+.+.....+.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn- 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN- 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-
Confidence 8776543 36899999999999999999999999877 4555 567888999999999999999999888664322
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 004632 533 DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN-VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILW 608 (741)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~ 608 (741)
....+..+...|...|..+-|+..+++..+ |+ ...|+.|..++-..|++.+|...|.+... +.|+.. +.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 455666777778899999999999999884 54 67999999999999999999999999999 788764 8899999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 004632 609 ACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPAN-GSIWGALLNGCRIHKRIDV 685 (741)
Q Consensus 609 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~ 685 (741)
.|...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. ...|+ ...+..++..+-..|+...
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999999987 3444 667889999999999999999999998 66665 6799999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 686 MKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 686 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
|.+.+.+++..+|.-+.++..|+.+|..+|+..+|++-|+..++-
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988773
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-19 Score=183.88 Aligned_cols=574 Identities=11% Similarity=0.058 Sum_probs=400.0
Q ss_pred hhHHHHHHccCCCCCcee-HHHHHHH--HHhCCChhHHHHHHHHhHHC--CCCCChhhHHHHHHHhcccCChhhHHHHHH
Q 004632 146 LDDARKVFDKMTSRDVVS-WSSIIAS--YFDNADVSEGLKMFHSMVRE--GVEPDFVTMLSLAEACGELCSLRPARSIHG 220 (741)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 220 (741)
++.|...|..+...++.- .-.+..+ ....|++..|+.+|+..... ..+||... .+-..+.+.|+.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 577888777776533322 2222233 34578899999999986543 33444421 22234468888889988888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcC---CHHHHHHHHhccC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004632 221 HVLRRKIKIDGPLGNSFIVMYSKCG---DLLSAERTFVKIE---KRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEE 294 (741)
Q Consensus 221 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 294 (741)
..++..+ -++.++..|...-.... .+..+...+...- ..++...+.|...|.-.|++..++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8887755 23333333333222223 3445555554432 257778899999999999999999999888775311
Q ss_pred --CChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCc-chHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcccHH
Q 004632 295 --PNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEY-DYLGPALIEFYAECGKMSECEKVIHAIGE--R-NILSWN 368 (741)
Q Consensus 295 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~ 368 (741)
.-...|-.+.+++-..|+++.|...|-+..+.. |++ ......+..+|.+.|+++.+...|+.+.. | +..+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 123457788889999999999999998887765 333 44557889999999999999999998864 3 344555
Q ss_pred HHHHHHHHcC----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH----HhcCCcch-hHHHH
Q 004632 369 MLISEYARKG----MSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVI----KIDCKDEF-VQSSL 439 (741)
Q Consensus 369 ~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~-~~~~l 439 (741)
.|...|...+ ..+.|..++.+..+. .+.|...|..+...+. .+++..+...|..+. ..+...+. +.+.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 5666666654 456677777776654 2344555555444443 444444466666554 33333444 89999
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC-------Cc------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 004632 440 IDMYSKCGFKNLAYLLFERIQQK-------SV------VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT-FLTA 505 (741)
Q Consensus 440 ~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l 505 (741)
+..+...|.++.|...|...... +. .+--.+...+-..++++.|.+.|..+.+. .|+-+. |..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999765432 22 12223455566678999999999999875 355433 3333
Q ss_pred HHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHH----
Q 004632 506 IQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS-----ERNVVSWSAMIDCYG---- 576 (741)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~---- 576 (741)
.......+...+|...+......+ ..++..+..+.+.+.+...+..|.+-|+.+. .+|..+.-+|...|.
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 323334577788888888776643 3356666777778888888888888555544 245555555665443
Q ss_pred --------hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632 577 --------MHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR 647 (741)
Q Consensus 577 --------~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (741)
..+..++|+++|.+.+. ..| |..+-+.+.-.++..|++.+|..+|.++.+... -...+|-.++.+|..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 23457889999999988 566 566788888889999999999999999998543 245567789999999
Q ss_pred cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----------
Q 004632 648 SGDIEGAFKMIHSM----PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAE---------- 713 (741)
Q Consensus 648 ~~~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---------- 713 (741)
+|++..|+++|+.. .-..+..+...|..++.+.|.+.+|.+.+..+....|.++.+.+.++-+..+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999988 2345788899999999999999999999999999999999988887766543
Q ss_pred ---------cCChHHHHHHHHHHHhCCC
Q 004632 714 ---------EGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 714 ---------~g~~~~A~~~~~~~~~~~~ 732 (741)
.+..+.|.++|++|.+.+-
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456678888888877543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.1e-19 Score=193.45 Aligned_cols=417 Identities=12% Similarity=0.023 Sum_probs=262.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Q 004632 265 WTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYA 344 (741)
Q Consensus 265 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 344 (741)
+......+.+.|++++|+..|++... +.|+...|..+..++.+.|+++.|...+...++.. |++...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 44556677788888888888888776 35677777777788888888888888888877754 666677777777777
Q ss_pred hcCChHHHHHHHHhcCCCC---cccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHH
Q 004632 345 ECGKMSECEKVIHAIGERN---ILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQI 421 (741)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 421 (741)
..|++++|+..|......+ ......++..... ..+........+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~----------------------------- 252 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILE----------------------------- 252 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHh-----------------------------
Confidence 7777777766664432111 1111111111111 111111222211
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc---hHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-
Q 004632 422 HGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV---VMWNSMICG---FYQNGNSLEAINLFHQMYLNC- 494 (741)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~- 494 (741)
..+........+...+ .....+....-+....+.+. ..+..+... ....+++++|...|+.....+
T Consensus 253 ------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 253 ------TKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred ------cCCCCCCCHHHHHHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 1111111111111111 00000000010111101011 111111111 122467778888888777654
Q ss_pred CCC-CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHH
Q 004632 495 LEM-DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSA 570 (741)
Q Consensus 495 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 570 (741)
..| ....+..+...+...|++++|...++...+..+. ....+..+...+...|++++|...|+++.+ .+...|..
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 223 3445666666777788888888888887765422 345666777778888888888888887663 35677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632 571 MIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG 649 (741)
Q Consensus 571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 649 (741)
+...+...|++++|...|++.++ +.|+. ..+..+...+.+.|++++|+..|++.++.. +.+...+..++.++...|
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 88888888899999999988888 56654 466677778888889999999988887742 334677888888888889
Q ss_pred ChHHHHHHHHhC-CCCCC-HH-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH
Q 004632 650 DIEGAFKMIHSM-PFPAN-GS-------IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF 720 (741)
Q Consensus 650 ~~~~A~~~~~~~-~~~~~-~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 720 (741)
++++|++.+++. ...|+ .. .+...+..+...|++++|...++++++++|++..++..++++|.+.|++++|
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 999998888886 32222 11 1111222234468899999999999999998888888899999999999999
Q ss_pred HHHHHHHHh
Q 004632 721 GKVRSIMEV 729 (741)
Q Consensus 721 ~~~~~~~~~ 729 (741)
+.+|++..+
T Consensus 562 i~~~e~A~~ 570 (615)
T TIGR00990 562 LKLFERAAE 570 (615)
T ss_pred HHHHHHHHH
Confidence 999988765
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.4e-18 Score=171.05 Aligned_cols=676 Identities=12% Similarity=0.097 Sum_probs=411.7
Q ss_pred HHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCC--------CCCc---cchHHHHHHHHhc-------
Q 004632 12 KLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFK--------EPDS---FMWAVLIKCYMWN------- 73 (741)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~---~~~~~ll~~~~~~------- 73 (741)
-+.++..=+...+ ---.+|......|.+.|+.++.+.+++... .+.. ..++.+...++..
T Consensus 26 D~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555344433 234578889999999999999999998765 1221 1122222222121
Q ss_pred ----CChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhH
Q 004632 74 ----NFFEESILLYHKMIREQATISNF-IYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDD 148 (741)
Q Consensus 74 ----~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (741)
..+..|..+|..........+.. .+..........-+.+.|...|....+.. +++.-..---....-..|++-.
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~ 182 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRG 182 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHH
Confidence 12234555555544332222221 12221111111122577777777777664 2222221111223334578888
Q ss_pred HHHHHccCCC--CC--ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCC---hhhHHHHHHH
Q 004632 149 ARKVFDKMTS--RD--VVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCS---LRPARSIHGH 221 (741)
Q Consensus 149 a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~ 221 (741)
|+.+|..... |. +...-.+..++.+.|+.+.|+..|....+.+. .++.++..|-..--...+ +..+..++..
T Consensus 183 al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ 261 (1018)
T KOG2002|consen 183 ALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQR 261 (1018)
T ss_pred HHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 8888877432 21 11222233556678888888888888876532 122233222222222233 3334444433
Q ss_pred HHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004632 222 VLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRC------TTSWTAMISCYNRSGWFQKALESFVKMLEVKEEP 295 (741)
Q Consensus 222 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 295 (741)
..+.. .-++.+.+.|.+.|.-.|++..+..+.+.+...+ ..+|-.+.+++-..|++++|...|.+.... .|
T Consensus 262 ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~ 338 (1018)
T KOG2002|consen 262 AYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DN 338 (1018)
T ss_pred HHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CC
Confidence 33322 2356677778888888888888888877765432 225777888888888888888888776654 34
Q ss_pred Ch--hhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcC----ChHHHHHHHHhcCCC---Cccc
Q 004632 296 NL--ITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECG----KMSECEKVIHAIGER---NILS 366 (741)
Q Consensus 296 ~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~ 366 (741)
|. ..+.-+.+.+...|+++.+...|+.+.+.. |+...+...|...|...+ ..+.|..++.+..++ |...
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a 416 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEA 416 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence 43 344556777888888888888888888876 777788888888888775 556677777666543 4445
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh-----cCCc---c-
Q 004632 367 WNMLISEYARKGMSKEALELLVQM----QTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKI-----DCKD---E- 433 (741)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~- 433 (741)
|-.+...+... ++..++..|... ...+..+.+...+.+.......|+++.|...+..+... +++. .
T Consensus 417 ~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 417 WLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 55555555443 333336665553 34455567777788887888888888888888877655 1111 0
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004632 434 F-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVM---WNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQAC 509 (741)
Q Consensus 434 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 509 (741)
. .-..+..++-..++.+.|.+.|..+....+.- |-.+.......++..+|..++++..... ..++..+..+...+
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHH
Confidence 1 34456666677778888888888877654432 2222222233467778888888776542 23333344444456
Q ss_pred hccccHHhHHHHHHHHHH-cCCCCCchhHHHHHHHHHh------------cCCHHHHHHHHHhcCC---CCHHHHHHHHH
Q 004632 510 SNIGQLEKGKWVHHKLIS-YGVRKDIYIDTALTDMYAK------------CGDLQTAQRVFDSMSE---RNVVSWSAMID 573 (741)
Q Consensus 510 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 573 (741)
.+...+..|..-|....+ ....+|++..-+|.+.|.. .+..++|.+.|.++.. .|...-|-+.-
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI 654 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence 666677777776665533 2233566666666665542 2346778888887764 35566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChH
Q 004632 574 CYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIE 652 (741)
Q Consensus 574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 652 (741)
.++..|++..|..+|.+..+.. .-...+|..+.++|...|+|..|+++|+...+ ....-+..+...|++++.+.|.+.
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 8888888888888888888863 23455778888888888888888888888877 444456778888888888888888
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHhccCCC
Q 004632 653 GAFKMIHSM--PFPANGSIWGALLNGCR-------------------IHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 653 ~A~~~~~~~--~~~~~~~~~~~l~~~~~-------------------~~g~~~~a~~~~~~~~~~~p~ 699 (741)
+|.+.+..+ ..|.++.+..+++-... ..+..+.|.++|..+....+.
T Consensus 734 eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 888888776 22333333333332211 224567777888888776655
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.1e-19 Score=186.28 Aligned_cols=292 Identities=15% Similarity=0.096 Sum_probs=199.5
Q ss_pred HHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHH
Q 004632 443 YSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMD---EVTFLTAIQACSNIGQLE 516 (741)
Q Consensus 443 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~ 516 (741)
+...|++++|...|.++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555544432 223445555555555555555555555554322111 133445555555566666
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 004632 517 KGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN------VVSWSAMIDCYGMHGQLNDAASLF 588 (741)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~ 588 (741)
+|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666555432 22445555666666666666666666665542 11 123556777788899999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 004632 589 KQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPAN 666 (741)
Q Consensus 589 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~ 666 (741)
+++.+ ..|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|.+.|++++|.+.++++ ...|+
T Consensus 204 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99988 4565 44777778889999999999999999987543323466788899999999999999999998 45566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh---cCChHHHHHHHHHHHhCCCccCCCC
Q 004632 667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAE---EGNWDEFGKVRSIMEVTGLKKVPGY 738 (741)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 738 (741)
...+..++..+.+.|++++|...++++.+..|++......+ ..+.. .|+..+|...+++|.+++++++|++
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~-~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL-DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH-HHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 67778888899999999999999999999999887544344 34443 5699999999999999999999974
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.7e-18 Score=183.81 Aligned_cols=331 Identities=11% Similarity=-0.024 Sum_probs=264.4
Q ss_pred ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 004632 365 LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYS 444 (741)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 444 (741)
.....++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|...++.++...|....++..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345567788889999999999999988863 2234445555566777999999999999999999988888999999999
Q ss_pred hcCCHHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHH
Q 004632 445 KCGFKNLAYLLFERIQQ--K-SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWV 521 (741)
Q Consensus 445 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 521 (741)
..|++++|...+++... | ++..+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999988765 2 45678888999999999999999999887653322 2233233 347788999999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHc
Q 004632 522 HHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLND----AASLFKQMLDS 594 (741)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~ 594 (741)
++.+.+....++......+...+...|++++|...++++.+ .+...+..+...+...|++++ |...|+++.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 99987765444555555667788899999999999998774 356778888999999999885 8999999998
Q ss_pred CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHH
Q 004632 595 GIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANG-SIWG 671 (741)
Q Consensus 595 ~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-~~~~ 671 (741)
..|+. ..+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|+..++++ ...|+. ..+.
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 67764 478888889999999999999999998853 234566778899999999999999999988 344443 3444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
.+..++...|++++|...++++++..|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 456778899999999999999999998864
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.5e-17 Score=182.27 Aligned_cols=386 Identities=10% Similarity=-0.021 Sum_probs=193.6
Q ss_pred HHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHcCCch
Q 004632 305 GSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARKGMSK 381 (741)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 381 (741)
......|+.++|.+++....... |.+...+..++..+...|++++|...+++.. ..+...+..++..+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 33344455555554444444311 3444445555555555555555555555532 223444556666667777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 004632 382 EALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ 461 (741)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 461 (741)
+|+..+++..+. .+.+.. +..+..++...|+.+.|...++.+++..|....++..++..+...+..+.|...++....
T Consensus 101 eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 101 EALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 777777777664 222333 555555666777777777777777777777666656667777777777777777766554
Q ss_pred CCch--------HHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHhccccHHhHH
Q 004632 462 KSVV--------MWNSMICGFY-----QNGNS---LEAINLFHQMYLN-CLEMDEV-TFL----TAIQACSNIGQLEKGK 519 (741)
Q Consensus 462 ~~~~--------~~~~l~~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~~~~~~a~ 519 (741)
++. .....+.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|.
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 221 0111111111 11112 3444445444432 1111110 000 0011223334444444
Q ss_pred HHHHHHHHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004632 520 WVHHKLISYGVR-KDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP 598 (741)
Q Consensus 520 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 598 (741)
..|+.+.+.+.+ |+ ..... +...|...|++++|+..|+++.+. .|
T Consensus 258 ~~~~~ll~~~~~~P~-~a~~~-------------------------------la~~yl~~g~~e~A~~~l~~~l~~--~p 303 (765)
T PRK10049 258 SEYQRLKAEGQIIPP-WAQRW-------------------------------VASAYLKLHQPEKAQSILTELFYH--PE 303 (765)
T ss_pred HHHHHhhccCCCCCH-HHHHH-------------------------------HHHHHHhcCCcHHHHHHHHHHhhc--CC
Confidence 444444433211 11 01111 234455555555555555554442 22
Q ss_pred C-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----------CCC---ccHHHHHHHHHHhcCChHHHHHHHH
Q 004632 599 N-----EVTFMNILWACSHSGSVEEGKFYFNAMRIFGV-----------EPD---LQHYACMVDLLSRSGDIEGAFKMIH 659 (741)
Q Consensus 599 ~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (741)
. ......+..++...|++++|.++++.+.+... .|+ ...+..++..+...|+.++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12233334444555555555555555544210 011 1123344555555666666666666
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 660 SM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 660 ~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
++ ..|.+...+..++..+...|++++|++.++++++..|++...+..++..+...|++++|...++++++
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55 23444555555555566666666666666666666666666666666666666666666666665554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=9.3e-18 Score=183.84 Aligned_cols=372 Identities=10% Similarity=0.027 Sum_probs=249.0
Q ss_pred CCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004632 330 PEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSL 406 (741)
Q Consensus 330 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 406 (741)
|.++....-.+.+....|+.++|++++.+... .+...+..+...+...|++++|...+++..+. -+.+......+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 45556666677777888888888888877653 23334777778888888888888888887764 122344455566
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHH
Q 004632 407 SACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEA 483 (741)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 483 (741)
..+...|++++|...++.+++..+.... +..+..++...|+.++|...++++.+. +...+..+...+...|..++|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 6677788888888888888877777766 777777777778888887777776543 334455566666677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH---HHHHHHHHhc
Q 004632 484 INLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDL---QTAQRVFDSM 560 (741)
Q Consensus 484 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~ 560 (741)
+..++.... .|+.... + ....+.... .. .+.......+++ ++|+..++.+
T Consensus 170 l~~l~~~~~---~p~~~~~---l-------~~~~~~~~~----r~----------~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 170 LGAIDDANL---TPAEKRD---L-------EADAAAELV----RL----------SFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HHHHHhCCC---CHHHHHH---H-------HHHHHHHHH----Hh----------hcccccChhHHHHHHHHHHHHHHHH
Confidence 777665432 2221000 0 000000000 00 000001111223 4555555554
Q ss_pred CC-----CCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632 561 SE-----RNVV-SW----SAMIDCYGMHGQLNDAASLFKQMLDSGIK-PNEVTFMNILWACSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 561 ~~-----~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 629 (741)
.+ |+.. .+ ...+..+...|++++|+..|+++.+.+.. |+.. ...+..+|...|++++|+..|+++.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 41 2211 11 11133445779999999999999986422 3332 222466899999999999999998873
Q ss_pred CCCC---CccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------C---HHHHHHHHHHHHhcCCHHHHHHH
Q 004632 630 GVEP---DLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-------------N---GSIWGALLNGCRIHKRIDVMKTI 689 (741)
Q Consensus 630 ~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-------------~---~~~~~~l~~~~~~~g~~~~a~~~ 689 (741)
.... .......++.++...|++++|.+.++++ ...| + ...+..+...+...|++++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3211 1345666777889999999999999988 2222 2 23456677788999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
++++....|.++..+..++.++...|+.++|++.+++..+..
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999887744
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=4e-18 Score=182.41 Aligned_cols=328 Identities=9% Similarity=0.009 Sum_probs=274.8
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHh
Q 004632 400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQ 476 (741)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 476 (741)
.....++..+...|+++.|..++...+...+.+..+...++......|+++.|...++++... +...+..+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345566777889999999999999999999999888888888888999999999999988753 45678888899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 004632 477 NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRV 556 (741)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (741)
.|++++|...+++..... +.+...+..+...+...|++++|...++.+....+.+.. .+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998752 345667788889999999999999999988776554333 33333 347889999999999
Q ss_pred HHhcCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHH----HHHHHHHHH
Q 004632 557 FDSMSER----NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEE----GKFYFNAMR 627 (741)
Q Consensus 557 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~----a~~~~~~~~ 627 (741)
++.+.+. +...+..+...+...|++++|+..++++.+ ..|+ ...+..+...+...|++++ |...|+++.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9987642 333455567788899999999999999998 4565 4577778889999999986 899999998
Q ss_pred HcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 004632 628 IFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYT 705 (741)
Q Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 705 (741)
+.. +.+...+..++..+.+.|++++|+..+++. ..|.+...+..+..++...|++++|...++++.+.+|+++..+.
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 853 235778889999999999999999999998 34556778888999999999999999999999999999887777
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632 706 LLSNIYAEEGNWDEFGKVRSIMEVTGLK 733 (741)
Q Consensus 706 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 733 (741)
.++.++...|+.++|...|+++.+...+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7889999999999999999998875443
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.1e-15 Score=154.81 Aligned_cols=632 Identities=12% Similarity=0.078 Sum_probs=337.8
Q ss_pred HHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhH
Q 004632 38 SYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSG 114 (741)
Q Consensus 38 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 114 (741)
.+...|++++|.+++.++.. | +...|.+|...|-..|+.+++...+-..-... +-|...|-.+.....+.|++.+|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 34445888888888877653 3 45678888888888888888877665543322 33445677777777788888888
Q ss_pred HHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCc-e-------eHHHHHHHHHhCCChhHHHHHHHH
Q 004632 115 EKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDV-V-------SWSSIIASYFDNADVSEGLKMFHS 186 (741)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~a~~~~~~ 186 (741)
.-.+.+.++.. +++....---...|.+.|+...|..-|.++-+.++ + .--.++..+...++-+.|++.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888776 33444444445677778888888777776654211 1 222334555666666777777777
Q ss_pred hHHCC-CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhc---------------------------CCCchHHHHHHH
Q 004632 187 MVREG-VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRK---------------------------IKIDGPLGNSFI 238 (741)
Q Consensus 187 m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li 238 (741)
....+ -..+...+++++..+.+...++.+......+.... +.++..+ ..+.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 66532 12334456666666666666666666555554422 2222222 1111
Q ss_pred HHHH--hcCCHHHHHHHHhccC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 004632 239 VMYS--KCGDLLSAERTFVKIE----KRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGW 312 (741)
Q Consensus 239 ~~~~--~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 312 (741)
-++. +.+...+++..|-... ..++..|..+..++...|++.+|+.+|..+.....--+...|-.+..++-..|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 2222 2233333333332211 123335677777777777777777777777765444455567777777777777
Q ss_pred hhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHH
Q 004632 313 LREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQT 392 (741)
Q Consensus 313 ~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (741)
.+.|.+.|+.++... |++..+...|..++.+.|+.++|.+.+..+..||... ...
T Consensus 465 ~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-----------------------~e~ 519 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN-----------------------AEA 519 (895)
T ss_pred HHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-----------------------hhh
Confidence 777777777777655 6777777777777777777777777777766554221 011
Q ss_pred CCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC-----------------------cchhHHHHHHHHHhcCCH
Q 004632 393 WGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-----------------------DEFVQSSLIDMYSKCGFK 449 (741)
Q Consensus 393 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~ 449 (741)
.+..|+..........+...|+.++-..+-..++..... ..........+-.+.++.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 112222222222233333333333322222222211100 000112222222222222
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHhHHHHHHHHHH
Q 004632 450 NLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDE--VTFLTAIQACSNIGQLEKGKWVHHKLIS 527 (741)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (741)
....+-...- ..+.--...|+..+. ..+..++.++++.++..+|..+...+.+
T Consensus 600 ~~~~~~l~d~-------------------------~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~ 654 (895)
T KOG2076|consen 600 NVMEKALSDG-------------------------TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALE 654 (895)
T ss_pred HHhhhcccch-------------------------hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1111111000 000011111111111 1223334444455555555554444433
Q ss_pred cCC-CCCc----hhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004632 528 YGV-RKDI----YIDTALTDMYAKCGDLQTAQRVFDSMSER-----N---VVSWSAMIDCYGMHGQLNDAASLFKQMLDS 594 (741)
Q Consensus 528 ~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 594 (741)
... ..+. ..-...+.+....+++..|...++.+... + ...|+...+.+.+.++-.--.+.+..+..
T Consensus 655 ~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~- 733 (895)
T KOG2076|consen 655 AYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV- 733 (895)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 211 1111 11122333444555666665555555421 1 23455444555554444333344443333
Q ss_pred CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHH-HHHHHh----------cCChHHHHHHHHhC
Q 004632 595 GIKPNE--VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACM-VDLLSR----------SGDIEGAFKMIHSM 661 (741)
Q Consensus 595 ~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~----------~~~~~~A~~~~~~~ 661 (741)
..|+. ..+.....-....+.+..|+..+-++... .|+...++.+ +-++.. .-.+-+++.++++.
T Consensus 734 -~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY 810 (895)
T KOG2076|consen 734 -KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRY 810 (895)
T ss_pred -cCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 23332 12222222345567777777777666553 3453333322 222211 11234566666665
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------------hhHHHHHHHHhhcCChHHHHHHHH
Q 004632 662 ----PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN------------GYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 662 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
.......++.+++++|...|-..-|...|+++++..|.+. .+-..|.-+|.++|+...|.++++
T Consensus 811 ~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 811 KELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 1123567888999999999999999999999999976532 245566679999999999999887
Q ss_pred H
Q 004632 726 I 726 (741)
Q Consensus 726 ~ 726 (741)
+
T Consensus 891 k 891 (895)
T KOG2076|consen 891 K 891 (895)
T ss_pred h
Confidence 4
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=2.8e-15 Score=151.98 Aligned_cols=616 Identities=11% Similarity=0.011 Sum_probs=381.0
Q ss_pred HHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCC---CCCceeHHHHHHHHHhCCChhH
Q 004632 103 RACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT---SRDVVSWSSIIASYFDNADVSE 179 (741)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 179 (741)
+.+...|+.++|.+++.+.++.. +.....|..|...|-..|+.+++...+-... ..|...|-.+.....+.|++.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344499999999999998876 5667788888889999999988887664443 3455678888888888999999
Q ss_pred HHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHH----HHHHHhcCCHHHHHHHHh
Q 004632 180 GLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSF----IVMYSKCGDLLSAERTFV 255 (741)
Q Consensus 180 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~ 255 (741)
|.-+|.+.++.. +++...+-.-...|-+.|+...|..-+.++.+..++.|..-...+ +..+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999888764 334444445556677889999998888888887664444433333 445666677788888887
Q ss_pred ccCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC-
Q 004632 256 KIEK-----RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMG- 329 (741)
Q Consensus 256 ~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 329 (741)
.... -+...++.++..+.+...++.+......+......+|..-+..-=. + .....-....+..
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~-----~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----R-----REEPNALCEVGKEL 374 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----c-----cccccccccCCCCC
Confidence 7654 2334688888999999999999988888876434444433311000 0 0000000000000
Q ss_pred CCcchH-HHHHHHHHHhcCChHHHHHHHHhcC----CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 004632 330 PEYDYL-GPALIEFYAECGKMSECEKVIHAIG----ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVAS 404 (741)
Q Consensus 330 p~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 404 (741)
+.+..+ ...+.-...+.+...+++.-|-... ..+...|..+..++.+.|++.+|+.+|..+.....--+...|..
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 011111 2222222222333333333222211 12345577777888888888888888888877644445667777
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc------------hHHHHHHH
Q 004632 405 SLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV------------VMWNSMIC 472 (741)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~l~~ 472 (741)
+..++...|..++|.+.|..++...|....+...|...+.+.|+.++|.+.+..+..+|. ........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 777788888888888888888888888777888888888888888888888888765542 12233345
Q ss_pred HHHhcCChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHhccccHHhHHHHHH------H
Q 004632 473 GFYQNGNSLEAINLFHQMYLNC----------------------LEMDEVTFLTAIQACSNIGQLEKGKWVHH------K 524 (741)
Q Consensus 473 ~~~~~g~~~~A~~~~~~m~~~~----------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~------~ 524 (741)
.+.+.|+.++=+.+-..|...+ .+....+...++.+-.+.++......-.. .
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 5666777666544444443211 11112222223333333333222211111 1
Q ss_pred HHHcCCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004632 525 LISYGVRKDI--YIDTALTDMYAKCGDLQTAQRVFDSMSER-----NV----VSWSAMIDCYGMHGQLNDAASLFKQMLD 593 (741)
Q Consensus 525 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 593 (741)
-...|+..+. ..+..++..+++.+++++|..+...+.+- +. ..-...+.+.+..+++..|...++.|..
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1112222222 24456777889999999999999887742 22 1234456677889999999999999987
Q ss_pred c-CC--CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 004632 594 S-GI--KPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGS 668 (741)
Q Consensus 594 ~-~~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~ 668 (741)
. +. .|.. ..|+..++...+.++-.--.+++..+......-++..+...+..+..++.+.-|+..+-++ ...|+.+
T Consensus 695 ~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P 774 (895)
T KOG2076|consen 695 QFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP 774 (895)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence 4 11 2322 2455455555665555544555555443222222333333445566788999999888777 3334433
Q ss_pred HH-HHHHHHHH----------hcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 669 IW-GALLNGCR----------IHKRIDVMKTIEKELSVTGTN--DNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 669 ~~-~~l~~~~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.. ..++.++. ++-..-++..++++..++.-. ...+++.+|++|...|-.--|..+|++.+.-
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 32 22222221 222345677778777776654 5678999999999999999999999998763
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.7e-18 Score=175.86 Aligned_cols=294 Identities=12% Similarity=0.071 Sum_probs=165.2
Q ss_pred CChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCC-------CcccHHHHHHHHHHcCCchHH
Q 004632 311 GWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGER-------NILSWNMLISEYARKGMSKEA 383 (741)
Q Consensus 311 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a 383 (741)
|+++.|...|..+.+.+ |++..++..++..+...|++++|..+++.+... ....+..++..|.+.|++++|
T Consensus 49 ~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444332 333334444444444444444444444433221 113456666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 004632 384 LELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKS 463 (741)
Q Consensus 384 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 463 (741)
..+|+++.+. .+++..++..+...+...|++++|.+.++.+.+.++.+.... .
T Consensus 127 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------------~ 179 (389)
T PRK11788 127 EELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------------I 179 (389)
T ss_pred HHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH--------------------------H
Confidence 7777777654 223444555555555555666666555555554443221100 0
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHH
Q 004632 464 VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDM 543 (741)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 543 (741)
...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 0123334445555666666666666665432 223344555556666666666666666666554333333455666667
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHH
Q 004632 544 YAKCGDLQTAQRVFDSMS--ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSH---SGSVEE 618 (741)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~ 618 (741)
|...|++++|...++++. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.++
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchh
Confidence 777777777777777665 25555566677777777888888888877777 46777777766665543 447777
Q ss_pred HHHHHHHHHHcCCCCCcc
Q 004632 619 GKFYFNAMRIFGVEPDLQ 636 (741)
Q Consensus 619 a~~~~~~~~~~~~~~~~~ 636 (741)
+..+++++.+.++.|++.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 888888777766666554
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.5e-16 Score=171.39 Aligned_cols=426 Identities=12% Similarity=0.026 Sum_probs=234.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCC
Q 004632 236 SFIVMYSKCGDLLSAERTFVKIEK--RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEP-NLITLITVLGSCAGLGW 312 (741)
Q Consensus 236 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~ 312 (741)
.....+.+.|++++|+..|++... |+...|..+..++...|++++|++.++...+. .| +...+..+..++...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence 344555666666666666665443 44455666666677777777777777766654 23 33456666666777777
Q ss_pred hhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHH
Q 004632 313 LREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQT 392 (741)
Q Consensus 313 ~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (741)
+++|..-+..+....- .+......++.-+........+...++.-+ .+...+..+.. +......+....-+....+
T Consensus 210 ~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 210 YADALLDLTASCIIDG--FRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 7777666655443321 111111111111111111223333333222 22333333322 2222222222211211111
Q ss_pred CCCCCCHH-HHHHHHHH---hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHH
Q 004632 393 WGLMPDSF-SVASSLSA---CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWN 468 (741)
Q Consensus 393 ~g~~p~~~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 468 (741)
..|+.. .+..+... ....+++++|.+.++.+++.+... ......++
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~----------------------------~~~a~a~~ 335 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG----------------------------EKEAIALN 335 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC----------------------------hhhHHHHH
Confidence 111110 00000000 112234444444444444332100 01223455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 004632 469 SMICGFYQNGNSLEAINLFHQMYLNCLEMD-EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKC 547 (741)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (741)
.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...++.+.+..+ .+..++..+...+...
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 5555566666666666666666553 233 44555566666666777777777766655432 2456666677777777
Q ss_pred CCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 004632 548 GDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYF 623 (741)
Q Consensus 548 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 623 (741)
|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+...+...|++++|+..|
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 778777777777663 3 455667777788888888888888888887 4564 457777777888888888888888
Q ss_pred HHHHHcCCCCCcc------HHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 624 NAMRIFGVEPDLQ------HYACMVDLLSRSGDIEGAFKMIHSM-PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 624 ~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
++..+.....+.. .++.....+...|++++|.+++++. .. +.+...+..++..+...|++++|...++++.+
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8887743211111 1111222333468888888888886 33 33455677888888888888888888888888
Q ss_pred cCCCCch
Q 004632 696 TGTNDNG 702 (741)
Q Consensus 696 ~~p~~~~ 702 (741)
+.+....
T Consensus 571 l~~~~~e 577 (615)
T TIGR00990 571 LARTEGE 577 (615)
T ss_pred HhccHHH
Confidence 8775443
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.84 E-value=5.1e-17 Score=163.25 Aligned_cols=519 Identities=12% Similarity=0.019 Sum_probs=283.2
Q ss_pred HHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCCC----CccchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004632 15 RLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEP----DSFMWAVLIKCYMWNNFFEESILLYHKMIREQ 90 (741)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 90 (741)
..|..+..+|+.||..||..||..||..|+++.|- +|.-|... +...++.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 57888999999999999999999999999999999 88887642 3455777777777777665553
Q ss_pred CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHH-------hCC-----------------CCChhhhhHHHHHhHhcCCh
Q 004632 91 ATISNFIYPSVLRACSSLGDLGSGEKVHGRIIK-------CGF-----------------DKDDVIQTSILCTYGEFGCL 146 (741)
Q Consensus 91 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~-----------------~~~~~~~~~l~~~~~~~g~~ 146 (741)
.|.+.||..|+.+|+..||+.....+-+.|.. +|+ -||.. ..+....-.|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHH
Confidence 56777888888888888776553333322221 121 11111 111122223333
Q ss_pred hHHHHHHccCC---------------------------------C-CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 004632 147 DDARKVFDKMT---------------------------------S-RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGV 192 (741)
Q Consensus 147 ~~a~~~~~~~~---------------------------------~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 192 (741)
+.+++++..++ + ++..+|..++..-.-+|+.+.|..++..|.+.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 44433332222 2 6777888888888889999999999999999999
Q ss_pred CCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHH
Q 004632 193 EPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCY 272 (741)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 272 (741)
+.+..-|-.++-+ .++...+..++..|...|+.|+..|+...+..+..+|....+....+.-.--....+..+.++.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 9888877777655 7888888889999999999999999888777777765533322211110001111233333331
Q ss_pred HhcCC-----hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCC--CCCcchHHHHHHHHHHh
Q 004632 273 NRSGW-----FQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGM--GPEYDYLGPALIEFYAE 345 (741)
Q Consensus 273 ~~~~~-----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~~l~~~~~~ 345 (741)
..+.. ..-.+..+.+..-.|+......|...++. ...|.-+...++...+..--. .+.+...+..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 11111 12222223333233444333444333332 225666666666666543222 12223333333333333
Q ss_pred cCChHHHHHHHH--hcCCC--CcccHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCC-------CHHHHHHHHHHhh
Q 004632 346 CGKMSECEKVIH--AIGER--NILSWNMLISEYARKGMSKEALELLVQMQTW----GLMP-------DSFSVASSLSACG 410 (741)
Q Consensus 346 ~~~~~~A~~~~~--~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-------~~~~~~~ll~~~~ 410 (741)
.-+-.....++. +.... +...-..+.... ..-+...++.-+..+... .+.| -...-..++..|.
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell-~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELL-ENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHH-HHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 221111111110 00000 000000011111 111112222211111110 0011 1111222333333
Q ss_pred ccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc------hHHHHHHHHHHhcCChHHHH
Q 004632 411 NVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV------VMWNSMICGFYQNGNSLEAI 484 (741)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~ 484 (741)
+.-+..++...-+.....- ....|..++..+......+.|..+.+++..++. ..+..+.+...+.+....+.
T Consensus 471 se~n~lK~l~~~ekye~~l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLL--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 3333333332222111111 113678888888888888888888888876643 45677778888888888888
Q ss_pred HHHHHHHHCCCC-C-CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 004632 485 NLFHQMYLNCLE-M-DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDS 559 (741)
Q Consensus 485 ~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (741)
.+++++.+.-.. | ...++-.++......|+.+...+.++.+...|+..+ ..++....+.++...|.++++.
T Consensus 549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~ 621 (1088)
T KOG4318|consen 549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEP 621 (1088)
T ss_pred HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchH
Confidence 888888763221 2 134455566666778888888888887777665542 2223334455555555555543
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=3.7e-16 Score=144.25 Aligned_cols=449 Identities=11% Similarity=0.056 Sum_probs=305.9
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhh--cCCChhhH-HHHHHHHHHhCCCCChhhhhHH
Q 004632 60 SFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACS--SLGDLGSG-EKVHGRIIKCGFDKDDVIQTSI 136 (741)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 136 (741)
+.+=|.|+.. ..+|...++.-+|++|...|++.+...-..|++.-+ ...++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4456666664 557899999999999999998888876666654433 23333322 33444454444 3333333
Q ss_pred HHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHH
Q 004632 137 LCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPAR 216 (741)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 216 (741)
+.|++.+ ++-+.......+|..||.|+|+-...+.|.+++++......+.+..+||.+|.+.. +...+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 4566555 44444445677999999999999999999999999998888999999999998764 33448
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 004632 217 SIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN 296 (741)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 296 (741)
++..+|....++||..++|+++....+-|+++.|. ..|++++.+|++-|+.|.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcc
Confidence 89999999999999999999999999999888876 447788999999999999
Q ss_pred hhhHHHHHHHhhccCChh-hHHHHHHHHHHh-------CCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC-------
Q 004632 297 LITLITVLGSCAGLGWLR-EGKSVHCQIIRK-------GMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE------- 361 (741)
Q Consensus 297 ~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------- 361 (741)
..+|..+|..+++.++.. .+..+..++... .+.|.+..++...+.++.+..+.+-|.++-.-+..
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 999999999888877653 344555554432 23467778888888999899998888887665542
Q ss_pred -CC---cccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hH
Q 004632 362 -RN---ILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQ 436 (741)
Q Consensus 362 -~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 436 (741)
++ ..-|..+....++....+.-+..|+.|.-.-.-|++.+...++++....+.++..-+++...+..|..... +.
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 12 22366778888999999999999999998888899999999999999999999999999999888865444 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 004632 437 SSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQ--NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQ 514 (741)
Q Consensus 437 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 514 (741)
..+...+++..- .|+...-..+-....+ ..-.+.....-.+|.+. .......+.++..+.+.|.
T Consensus 472 eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~ 537 (625)
T KOG4422|consen 472 EEILMLLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGR 537 (625)
T ss_pred HHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcch
Confidence 333333333320 1111100011000000 00011111122233333 2333445555556677777
Q ss_pred HHhHHHHHHHHHHcC-CCCCchhHH---HHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 004632 515 LEKGKWVHHKLISYG-VRKDIYIDT---ALTDMYAKCGDLQTAQRVFDSMSERNVV 566 (741)
Q Consensus 515 ~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 566 (741)
.++|.+++..+.+.+ -.|-....+ .+++...+...+..|..+++-+...|..
T Consensus 538 ~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 538 TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 777777777664322 223333333 4555556667777777777766654433
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=8.1e-16 Score=164.70 Aligned_cols=425 Identities=9% Similarity=0.031 Sum_probs=257.0
Q ss_pred HHHhcCCHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-hH--HHHHHHhhccCCh
Q 004632 240 MYSKCGDLLSAERTFVKIEKRCTT---SWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI-TL--ITVLGSCAGLGWL 313 (741)
Q Consensus 240 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~--~~ll~~~~~~~~~ 313 (741)
...+.|+++.|...|++..+.++. ....++..+...|+.++|+..+++.. .|+.. .+ ..+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 345666666666666665542222 12255555566666666666666654 22111 11 2223344555666
Q ss_pred hhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 004632 314 REGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTW 393 (741)
Q Consensus 314 ~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (741)
+.|.++++++.+.. |.++.+...++..+...++.++|.+.++++...
T Consensus 119 d~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------------------------------- 165 (822)
T PRK14574 119 DQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER------------------------------- 165 (822)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-------------------------------
Confidence 66666666665554 444555445555555555555555555554432
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC-CchHHHH---
Q 004632 394 GLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK-SVVMWNS--- 469 (741)
Q Consensus 394 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--- 469 (741)
.|+...+..+...+...++...|.+.++.+++..|.+..++..+.....+.|-...|.++..+-+.- +...+.-
T Consensus 166 --dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 166 --DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred --CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 2332232222222222333333444444444444444444444444445555444444444432210 0000000
Q ss_pred -HHHHHH---------hcCC---hHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccccHHhHHHHHHHHHHcCC
Q 004632 470 -MICGFY---------QNGN---SLEAINLFHQMYLN-CLEMDE-V----TFLTAIQACSNIGQLEKGKWVHHKLISYGV 530 (741)
Q Consensus 470 -l~~~~~---------~~g~---~~~A~~~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (741)
.+.-.+ ...+ .+.|+.-++.+... +..|.. . ...-.+.++...++..+++..++.+...+.
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 000000 1112 34455555655542 122322 1 222345567788899999999999988887
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----
Q 004632 531 RKDIYIDTALTDMYAKCGDLQTAQRVFDSMSER---------NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGI----- 596 (741)
Q Consensus 531 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 596 (741)
+....+-..+.++|...+++++|..++.++..+ +......|..++...+++++|..+++++.+...
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 767778888999999999999999999987531 223356788889999999999999999987311
Q ss_pred ------CC--CHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCC
Q 004632 597 ------KP--NEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPA 665 (741)
Q Consensus 597 ------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~ 665 (741)
.| |-. .+..++..+...|+..+|++.++++.... +-|......+.+++...|++.+|.+.++.+ -.|.
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 12 222 33445557888999999999999998754 557888889999999999999999999777 3445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 004632 666 NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYY 704 (741)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 704 (741)
+..+....+.+....+++.+|..+.+.+.+..|+++.+-
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 666777888888899999999999999999999988543
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=1.6e-13 Score=133.98 Aligned_cols=472 Identities=11% Similarity=0.071 Sum_probs=231.9
Q ss_pred ccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 004632 208 ELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALES 284 (741)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 284 (741)
...+.+.|..++....+-- +.+.. |..++.+..-++.|.++++...+ .+...|.+-..---.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444455655555555432 11222 23334444556666666655433 3444555555444556666655555
Q ss_pred HHH----HHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCc-chHHHHHHHHHHhcCChHHHHHHHHhc
Q 004632 285 FVK----MLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEY-DYLGPALIEFYAECGKMSECEKVIHAI 359 (741)
Q Consensus 285 ~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 359 (741)
+.+ +..+|+..+..-|..=...|-..|..-.+..+....+..|+...+ ...+..-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 433 344566666666666666666666666666666666666654222 234444444455555555555555443
Q ss_pred CC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhH
Q 004632 360 GE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQ 436 (741)
Q Consensus 360 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 436 (741)
.+ .+...|......--..|..++...+|++. +..-+.....+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqka-----------------------------------v~~~pkae~lw 587 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA-----------------------------------VEQCPKAEILW 587 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH-----------------------------------HHhCCcchhHH
Confidence 32 12333444444444444444444555544 44444444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 004632 437 SSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG 513 (741)
Q Consensus 437 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 513 (741)
-..+..+-..|++..|..++....+. +..+|-+-+..-..+..++.|..+|.+... ..|+...|..-+....-.+
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence 44444444444444444444433321 223444444444444455555555544433 2344444444444444444
Q ss_pred cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004632 514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQ 590 (741)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 590 (741)
+.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|...|..-.+ | .+..|-.+...--+.|++-.|..++++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 555555555444432 222233444444555555555555555544332 2 233444444444455555555555555
Q ss_pred HHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 004632 591 MLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSI 669 (741)
Q Consensus 591 ~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (741)
..-. .| +...|...+..-.+.|+.+.|..+..++++. .+.+...|..-+...-+.++-..+...+++.. .|+.+
T Consensus 745 arlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphV 819 (913)
T KOG0495|consen 745 ARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHV 819 (913)
T ss_pred HHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchh
Confidence 5542 23 3335555555555555555555555555542 22334444444444444445445555555443 33344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 004632 670 WGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM 727 (741)
Q Consensus 670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 727 (741)
+..+...+.....++.|.+.|.++...+|++..+|..+...+...|.-++-.+++.+-
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4444445555555556666666666666655555555555555555555555555544
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.4e-15 Score=161.14 Aligned_cols=421 Identities=11% Similarity=0.016 Sum_probs=311.5
Q ss_pred HhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCccc-HHHH--HHHHHHcCCchH
Q 004632 306 SCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILS-WNML--ISEYARKGMSKE 382 (741)
Q Consensus 306 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~~~~~~ 382 (741)
...+.|+++.|...+.++.+.. |.++.....++.++...|+.++|+..+++...|+... +..+ ...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4468899999999999999876 5554333388888999999999999999988764443 3333 457888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 004632 383 ALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK 462 (741)
Q Consensus 383 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 462 (741)
|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.+..+.... +..++..+...++..+|...++++.+.
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999862 233556666677788999999999999999988877333 355555555567776699999988753
Q ss_pred ---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----hccccH---HhHHHHHHHH
Q 004632 463 ---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT------FLTAIQAC-----SNIGQL---EKGKWVHHKL 525 (741)
Q Consensus 463 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~ 525 (741)
+...+..++.+..+.|-...|+++.++-... ..+...- ....++.- ....++ +.|..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4567788888999999999999877653211 1111111 11111110 112233 3344445554
Q ss_pred HH-cCCCCCc-hh-HH---HHHHHHHhcCCHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004632 526 IS-YGVRKDI-YI-DT---ALTDMYAKCGDLQTAQRVFDSMSERN----VVSWSAMIDCYGMHGQLNDAASLFKQMLDSG 595 (741)
Q Consensus 526 ~~-~~~~~~~-~~-~~---~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 595 (741)
.. .+..|.. .. .. -.+-++...|++.++++.++.+..+. ..+-..+..+|...+++++|+.+|+++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 43 2222322 11 12 34456788999999999999998422 2356678899999999999999999997642
Q ss_pred C-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----------CCC---ccHHHHHHHHHHhcCChHHHHH
Q 004632 596 I-----KPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGV-----------EPD---LQHYACMVDLLSRSGDIEGAFK 656 (741)
Q Consensus 596 ~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~ 656 (741)
. .++......|..+|...+++++|..+++.+.+... .|+ ...+..++..+.-.|+..+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 12333456788899999999999999999988321 122 2234456778889999999999
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 657 MIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 657 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
.++++ ..|-|...+..+...+...|.+.+|+..++.+..++|++..+...++.++...|++.+|....+.+...-
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999 4667899999999999999999999999999999999999999999999999999999999988776643
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.6e-12 Score=125.69 Aligned_cols=603 Identities=14% Similarity=0.108 Sum_probs=382.9
Q ss_pred CChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHH
Q 004632 43 GSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHG 119 (741)
Q Consensus 43 g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 119 (741)
+++..|+.+++...+ | +...|..-.+.--..|.+..|..+..+=.+.- +-+...+...+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHHHH
Confidence 466777777777765 2 34456655555566666666665554433221 22222332222 2233444444444
Q ss_pred HHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC--C-CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh
Q 004632 120 RIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS--R-DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDF 196 (741)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 196 (741)
...+.- +-++..|-..... -.+...-.+++.+..+ | ++..|... +.-.+.+.|..++....+- ++..
T Consensus 340 ~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s- 409 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQS- 409 (913)
T ss_pred HHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccch-
Confidence 444332 2222222211111 1111112223332221 2 22233222 2334444466666555542 1111
Q ss_pred hhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC--------CCcchHHHH
Q 004632 197 VTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK--------RCTTSWTAM 268 (741)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 268 (741)
.-|.-++++..-++.|+.++....+. ++-+..+|.+-...--.+|+.+...++..+-.. -+...|-.=
T Consensus 410 ---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 410 ---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 12334455555566666666655443 344555665555555666666666666554221 112234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC--ChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhc
Q 004632 269 ISCYNRSGWFQKALESFVKMLEVKEEP--NLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAEC 346 (741)
Q Consensus 269 i~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 346 (741)
...+-..|..-.+..+....+.-|+.- -..||..-.+.|.+.+.++-+..+|...++.. |.+..+|...+..--..
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhc
Confidence 445555566666666666666655543 33588888899999999999999999988865 78889999998888889
Q ss_pred CChHHHHHHHHhcCCC---CcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 004632 347 GKMSECEKVIHAIGER---NILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHG 423 (741)
Q Consensus 347 ~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 423 (741)
|..+.-..+|++.... ....|-.....+-..|+...|..++....+.
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~------------------------------ 613 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA------------------------------ 613 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh------------------------------
Confidence 9999999888886532 2334555555555666666666666666553
Q ss_pred HHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004632 424 HVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ--KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVT 501 (741)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 501 (741)
.+.+..++...+.......+++.|..+|.+... ++...|..-+..--..++.++|++++++.++. .+.-...
T Consensus 614 -----~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl 687 (913)
T KOG0495|consen 614 -----NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKL 687 (913)
T ss_pred -----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHH
Confidence 333223444455555555666666666655443 34556655555555678888888888887764 3333556
Q ss_pred HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhc
Q 004632 502 FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS--ER-NVVSWSAMIDCYGMH 578 (741)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~ 578 (741)
|..+.+.+-+.++.+.|...|..=.+. ++..+..|-.+...-.+.|.+-.|+.++++.. .| |...|-..|+.-.+.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence 777777778888888888777655443 34567788888888889999999999999876 34 678999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHH
Q 004632 579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658 (741)
Q Consensus 579 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (741)
|+.+.|..++.++++. ++.+...|..-|...-+.++-......+++ ...|+...-.+...+....++++|.+.|
T Consensus 767 gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred CCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999884 333445777777766666664444443332 3457778888999999999999999999
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 004632 659 HSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSN 709 (741)
Q Consensus 659 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 709 (741)
.+. ..+...++|..+......+|.-++-.+++.+.....|.....|.....
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 998 456678899999999999999999999999999999998888877653
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.2e-15 Score=141.80 Aligned_cols=469 Identities=12% Similarity=0.069 Sum_probs=294.2
Q ss_pred cccCChhhHHHHHHHHHHhcCCCchHHH-HHHHHHHHhcCCHHHHHHHHhccCC--CC------cchHHHHHHHHHhcCC
Q 004632 207 GELCSLRPARSIHGHVLRRKIKIDGPLG-NSFIVMYSKCGDLLSAERTFVKIEK--RC------TTSWTAMISCYNRSGW 277 (741)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~ 277 (741)
.......+|...|+.+++...-|+.... ..+.+.+.+...+.+|+++++.... |+ +...+.+.-.+.+.|+
T Consensus 212 ~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 212 EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEeccc
Confidence 3344455666666666666555544332 2344566677777777777655432 21 2244555556677888
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHH
Q 004632 278 FQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIH 357 (741)
Q Consensus 278 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (741)
++.|+..|+...+. .|+..+-..++-++...|+.+...+.|..++.....|++... .+..+
T Consensus 292 y~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky--------i~~~d--------- 352 (840)
T KOG2003|consen 292 YDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY--------IKEKD--------- 352 (840)
T ss_pred chhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc--------cCCcC---------
Confidence 88888888777664 577776666666666677777777777777766544433211 00000
Q ss_pred hcCCCCcccHHH-----HHHHHHHcC--CchHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHhc
Q 004632 358 AIGERNILSWNM-----LISEYARKG--MSKEALELLVQMQTWGLMPDSFS-VASSLSACGNVGSLQLGLQIHGHVIKID 429 (741)
Q Consensus 358 ~~~~~~~~~~~~-----li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 429 (741)
.|+....+- .+...-+.. +.++++-.--++..--+.||-.. +.+.+..+..+...+.|..+
T Consensus 353 ---dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl-------- 421 (840)
T KOG2003|consen 353 ---DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL-------- 421 (840)
T ss_pred ---CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh--------
Confidence 111111111 111121111 12233333233332223333211 11222221111112222111
Q ss_pred CCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHH-----HHHh-cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004632 430 CKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMIC-----GFYQ-NGNSLEAINLFHQMYLNCLEMDEVTFL 503 (741)
Q Consensus 430 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~-----~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~ 503 (741)
--.-..-+.+.|+++.|.+++.-..+.|..+-++... -|.+ -.++..|.+.-+..... -.-+.....
T Consensus 422 ------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~ 494 (840)
T KOG2003|consen 422 ------EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALT 494 (840)
T ss_pred ------hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhh
Confidence 1223345667788888888877776665443322221 1222 23455555555444322 122333333
Q ss_pred HHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCC
Q 004632 504 TAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS---ERNVVSWSAMIDCYGMHGQ 580 (741)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 580 (741)
.-.......|++++|.+.+++....+-......|+. .-.+...|++++|+..|-++. ..+......+...|-...+
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 333334557889999999988876544433333433 234677899999999998876 3677788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHH
Q 004632 581 LNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH 659 (741)
Q Consensus 581 ~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (741)
..+|++++-+... +.|+ +....-|...|-+.|+...|.+++-+-.+ -++-+..+..+|...|....-+++|+.+|+
T Consensus 574 ~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 574 PAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999988877 6675 55777888899999999999888765544 356679999999999999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 004632 660 SM-PFPANGSIWGALLNGC-RIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN 716 (741)
Q Consensus 660 ~~-~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 716 (741)
+. -..|+..-|..++..| ++.|++++|...|+.+....|++...+..|.+++-..|-
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99 5789999999888776 679999999999999999999999999999999888774
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=1e-14 Score=147.01 Aligned_cols=553 Identities=12% Similarity=0.037 Sum_probs=264.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCC
Q 004632 81 LLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRD 160 (741)
Q Consensus 81 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (741)
.++..+...|+.|+..||..+|..||..|+.+.|- +|.-|.-...+....+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45556666677777777777777777777777666 6666666666666666677776666666665554 566
Q ss_pred ceeHHHHHHHHHhCCChhH---HHHHHHHhH----HCCCCCChhhHHHHHHHhcccCChhhH---------HHHHHHHHH
Q 004632 161 VVSWSSIIASYFDNADVSE---GLKMFHSMV----REGVEPDFVTMLSLAEACGELCSLRPA---------RSIHGHVLR 224 (741)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~---a~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a---------~~~~~~~~~ 224 (741)
..+|..|..+|.+.||... +.+.++... ..|+.....-+-..+..+. +-...+ +.+++..++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p--~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCP--HSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCc--ccchhHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777766533 222122111 1122111111111111111 111111 122333333
Q ss_pred hcCCCchHHHHH----HHHHHH-hcCCHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh
Q 004632 225 RKIKIDGPLGNS----FIVMYS-KCGDLLSAERTFVKIEK-RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI 298 (741)
Q Consensus 225 ~~~~~~~~~~~~----li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 298 (741)
.+.......++. +++-.. -...+++-......... +++.+|..++..-.-+|+.+.|..++.+|++.|.+.+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 331111111110 111111 11223333333333333 677778888888888888888888888888888877777
Q ss_pred hHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcC
Q 004632 299 TLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKG 378 (741)
Q Consensus 299 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 378 (741)
-|-.++-+ .++...+..+...|...|+.|++......++-.+. +|....+.+. . +....+.+-..+-.-.|
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~-N~~t~~~~e~----s-q~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS-NGQTKYGEEG----S-QLAHGFTAAVRSAACRG 311 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc-chhhhhcccc----c-chhhhhhHHHHHHHhcc
Confidence 76666654 67777777888888888888665555444444433 3331111111 1 11111222222222222
Q ss_pred ----------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCc---ch-hHHHHHHHHH
Q 004632 379 ----------MSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKD---EF-VQSSLIDMYS 444 (741)
Q Consensus 379 ----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~-~~~~l~~~~~ 444 (741)
...-....+.+..-.|+......|. ...-....|.-+..+++-..+....... .. .+..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 1111222222222223333332222 2222233566666666555544322211 11 3333333333
Q ss_pred hcCCHHHHHHHHH--hccCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-------CHHHHHHHHHHH
Q 004632 445 KCGFKNLAYLLFE--RIQQK--SVVMWNSMICGFYQNGNSLEAINLFHQMYL----NCLEM-------DEVTFLTAIQAC 509 (741)
Q Consensus 445 ~~~~~~~a~~~~~--~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~~-------~~~~~~~ll~~~ 509 (741)
+.-+.-....++. +..+. +....-.+.. +...-+...+++-+..+.. +...| =...-+.++..|
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vse-ll~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSE-LLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHH-HHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 2211111111111 00000 0000000000 0000011111111111100 00011 111233445555
Q ss_pred hccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHH
Q 004632 510 SNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNV------VSWSAMIDCYGMHGQLND 583 (741)
Q Consensus 510 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~ 583 (741)
++.-+..++...-+.....-+. ..|..+++.+....+.+.|..+.+++..++. .-+..+.+.+.+.+...+
T Consensus 470 ~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 5555555555444433332222 5677888888888888888888888776543 346677777778888888
Q ss_pred HHHHHHHHHHcC-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 584 AASLFKQMLDSG-IKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 584 A~~~~~~~~~~~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
+..+++++.+.- ..|+. .++-.++......|+.+...++++-+...|+..+ ..++....+.++...|.++.+..
T Consensus 547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 888888877631 12222 3555566666777888877777777766555432 22233334455555555544433
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=8e-14 Score=129.11 Aligned_cols=436 Identities=13% Similarity=0.073 Sum_probs=293.0
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccC--ChhhH-HHHHHHHHHhcCCCchHHHHHHH
Q 004632 162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELC--SLRPA-RSIHGHVLRRKIKIDGPLGNSFI 238 (741)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~li 238 (741)
.+-|.|+. ....|.++.+.-+|+.|.+.|++.....-..|++..+-.+ ++--+ .+-|-.|.+.|-... .+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~-~s----- 189 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST-SS----- 189 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc-cc-----
Confidence 35555555 3567888889999999999888777665555555443222 22211 223333334443222 11
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632 239 VMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS 318 (741)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 318 (741)
.+.|++.+ ++-+...++..++..+|.++|+-...+.|.+++++..+...+.+..+||.+|.+-.-. ...+
T Consensus 190 ---WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 190 ---WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ---cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 24455444 4445555667789999999999999999999999999988899999999999875433 2377
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchH----HHHHHHHHHHCC
Q 004632 319 VHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKE----ALELLVQMQTWG 394 (741)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g 394 (741)
++.+|....+.| |..++|+++.+..+.|+++. |++++.+|++-|
T Consensus 260 Lv~EMisqkm~P--------------------------------nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG 307 (625)
T KOG4422|consen 260 LVAEMISQKMTP--------------------------------NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG 307 (625)
T ss_pred HHHHHHHhhcCC--------------------------------chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Confidence 888888888776 89999999999999998764 578899999999
Q ss_pred CCCCHHHHHHHHHHhhccCChHH-HHHHHHHHHHh---------cCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC--
Q 004632 395 LMPDSFSVASSLSACGNVGSLQL-GLQIHGHVIKI---------DCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK-- 462 (741)
Q Consensus 395 ~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 462 (741)
+.|...+|..++..+.+.++..+ +..++.++... .+.++..+...+..|.+..+.+.|..+..-+...
T Consensus 308 VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N 387 (625)
T KOG4422|consen 308 VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN 387 (625)
T ss_pred CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc
Confidence 99999999999998887777643 45555554432 2223337778888888888888888876655432
Q ss_pred ---------CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCC
Q 004632 463 ---------SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKD 533 (741)
Q Consensus 463 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 533 (741)
...-|..+....++....+.-...|+.|.-.-+-|+..+...++++....+.++-.-++|..++..|....
T Consensus 388 ~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 388 WKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 11335566777788888899999999998888889999999999999999999999999999988775544
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004632 534 IYIDTALTDMYAKCGDLQTAQRVFDSMSERNVV---SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWAC 610 (741)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 610 (741)
...-..+...+++.. ..|+.. -+.....-++ ..-.+.....-.++.+..+.| ...+.++-.+
T Consensus 468 ~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll 532 (625)
T KOG4422|consen 468 SDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILL 532 (625)
T ss_pred HHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHH
Confidence 333333332222221 012211 1222211111 111222233344555544443 3445555567
Q ss_pred hccCCHHHHHHHHHHHHHcC-CCCCccHHH---HHHHHHHhcCChHHHHHHHHhC
Q 004632 611 SHSGSVEEGKFYFNAMRIFG-VEPDLQHYA---CMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
.+.|+.++|.+++..+.+.+ -.|-....+ -+++.-.+.++...|+.+++-+
T Consensus 533 ~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 533 LRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 78899999999999886633 233344455 4455556777888888888877
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.3e-13 Score=130.16 Aligned_cols=216 Identities=11% Similarity=0.088 Sum_probs=174.3
Q ss_pred hccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHH
Q 004632 510 SNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAAS 586 (741)
Q Consensus 510 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 586 (741)
.-.|+.-.+..-|+..++....++. .|-.+..+|....+.++....|++... .|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3467777888888888877655433 255566678888899999999988773 466778887888888899999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 004632 587 LFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFP 664 (741)
Q Consensus 587 ~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 664 (741)
=|++.+. +.|+. ..|..+.-+..+.++++++...|++.++. ++-.++.|+....++...+++++|.+.|+.. ...
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999999 78855 47888888888899999999999999874 5666889999999999999999999999987 333
Q ss_pred CC-------HH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 665 AN-------GS-IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 665 ~~-------~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
|. +. ....-+-.+...+++..|..+++++.+++|....++..|+.+-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33 22 2222233345669999999999999999999999999999999999999999999998643
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.4e-12 Score=118.75 Aligned_cols=455 Identities=10% Similarity=0.079 Sum_probs=339.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 004632 231 GPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL-ITLITVLGS 306 (741)
Q Consensus 231 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~ 306 (741)
...|....+--..++++..|..+|++... +++..|--.+..-+++.....|..++++.... -|.+ ..|-..+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 33444444445567788899999998776 45667888888889999999999999988764 3332 234444444
Q ss_pred hhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcccHHHHHHHHHHcCCchHHH
Q 004632 307 CAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG--ERNILSWNMLISEYARKGMSKEAL 384 (741)
Q Consensus 307 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~ 384 (741)
--..|++..|.++|+.-.+.. ++...+...+..-.+-+.++.|..++++.. .|++.+|-.....-.+.|+...+.
T Consensus 151 EE~LgNi~gaRqiferW~~w~---P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWE---PDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 556799999999999988775 788899999999999999999999999864 689999999999999999999999
Q ss_pred HHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch--hHHHHHHHHHhcCCHHHHHHHH---
Q 004632 385 ELLVQMQTWGLMPD---SFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF--VQSSLIDMYSKCGFKNLAYLLF--- 456 (741)
Q Consensus 385 ~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~--- 456 (741)
.+|....+. +..| ...+.+....-.....++.|.-+|+-++..-|.... ++..+...--+-|+.....+..
T Consensus 228 ~VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999998764 1111 222333333344677889999999999998887754 7777776666667665554432
Q ss_pred -----HhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHH---HHHHhccccHHhH
Q 004632 457 -----ERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEV-------TFLTA---IQACSNIGQLEKG 518 (741)
Q Consensus 457 -----~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~l---l~~~~~~~~~~~a 518 (741)
+.+...|+ .+|-..+..--..|+.+...++|+..+.. ++|-.. .|.-+ +-.-....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33344444 45555666667789999999999999876 555221 22211 1222457889999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHH----hcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004632 519 KWVHHKLISYGVRKDIYIDTALTDMYA----KCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQML 592 (741)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 592 (741)
.++++...+. ++....+|.-+--+|+ ++.++..|.+++..... |...+|...|..-.+.++++.+..+|++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999883 5566777776555554 57899999999998874 888899999999999999999999999999
Q ss_pred HcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 004632 593 DSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIF-GVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSI 669 (741)
Q Consensus 593 ~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~ 669 (741)
+ ..| |..+|......-...|+.+.|..+|.-+++. .+......+...++.=...|.++.|..+++++ ...+...+
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 9 677 5568888888778889999999999999883 33344556777777777899999999999998 44555667
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc
Q 004632 670 WGALLNGCR-----IHK-----------RIDVMKTIEKELSV 695 (741)
Q Consensus 670 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 695 (741)
|......-. +.+ ....|..+|+++..
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 766665433 334 56678888888764
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.6e-14 Score=134.47 Aligned_cols=423 Identities=12% Similarity=0.086 Sum_probs=295.4
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC--CC------cccHHHHHHH
Q 004632 302 TVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE--RN------ILSWNMLISE 373 (741)
Q Consensus 302 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~li~~ 373 (741)
.+.+.|.......+|+..++-+++..+.|+...+...+..++.+...+.+|++.++-... |+ +...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 334455555667788888888888888877777777888888888889999888875432 21 2234555556
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC-------------cchhHHH--
Q 004632 374 YARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-------------DEFVQSS-- 438 (741)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~-- 438 (741)
+.+.|.++.|+..|+...+. .|+..+-..++-++...|+.++..+.|..++..... ++.+.+.
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 78899999999999998774 688888778888888889999999999888754211 1111111
Q ss_pred ---HHHHHHhcC--CHHHHHHHHHhcc----CCCc-------------hHHHH--------HHHHHHhcCChHHHHHHHH
Q 004632 439 ---LIDMYSKCG--FKNLAYLLFERIQ----QKSV-------------VMWNS--------MICGFYQNGNSLEAINLFH 488 (741)
Q Consensus 439 ---l~~~~~~~~--~~~~a~~~~~~~~----~~~~-------------~~~~~--------l~~~~~~~g~~~~A~~~~~ 488 (741)
.+.-+.+.+ +.+.++-.-.++. .++- ..+.. -...|.++|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 122222222 1222222112222 2211 00111 1235788999999999999
Q ss_pred HHHHCCCCCCHHHHHH--HHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 004632 489 QMYLNCLEMDEVTFLT--AIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVV 566 (741)
Q Consensus 489 ~m~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 566 (741)
-+.+...+.-...-+. .+..+....++..|.++-+.....+ .-++.....-.+.....|++++|.+.+++....|..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8876644333322222 2333333456777777766654322 111111111122234568999999999999988776
Q ss_pred HHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 004632 567 SWSAMID---CYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVD 643 (741)
Q Consensus 567 ~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 643 (741)
+-.+|.. .+-..|+.++|+..|-++..- +..+......+...|....+...|++++-+.... ++.|+.++..|.+
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 5555443 466789999999999988763 2335567778888999999999999999877653 4556889999999
Q ss_pred HHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH
Q 004632 644 LLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFG 721 (741)
Q Consensus 644 ~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 721 (741)
.|-+.|+-.+|++..-.- . +|-+..+...|...|....-+++++.+++++.-+.|+...+...++.++.+.|++.+|.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987655 3 66788899999888888888999999999999999998888888899999999999999
Q ss_pred HHHHHHHh
Q 004632 722 KVRSIMEV 729 (741)
Q Consensus 722 ~~~~~~~~ 729 (741)
++|+..-+
T Consensus 681 d~yk~~hr 688 (840)
T KOG2003|consen 681 DLYKDIHR 688 (840)
T ss_pred HHHHHHHH
Confidence 99997644
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.1e-12 Score=117.96 Aligned_cols=455 Identities=11% Similarity=0.089 Sum_probs=348.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Q 004632 265 WTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYA 344 (741)
Q Consensus 265 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 344 (741)
|--...--..++++..|..+|++..+.. ..+...|..-+..-.+...+..|..+++..+..- |.-..++-..+.+--
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHH
Confidence 4444444455677889999999998765 4566677777777788899999999999988754 677788888888888
Q ss_pred hcCChHHHHHHHHhcC--CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 004632 345 ECGKMSECEKVIHAIG--ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIH 422 (741)
Q Consensus 345 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 422 (741)
..|++..|..+|++.. +|+...|++.|+.-.+.+.++.|..++++.+- +.|+..+|......-.+.|++..+..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8999999999999976 69999999999999999999999999999986 5799999999888889999999999999
Q ss_pred HHHHHhcCCcch---hHHHHHHHHHhcCCHHHHHHHHHhccCC-----CchHHHHHHHHHHhcCChHHHHHH--------
Q 004632 423 GHVIKIDCKDEF---VQSSLIDMYSKCGFKNLAYLLFERIQQK-----SVVMWNSMICGFYQNGNSLEAINL-------- 486 (741)
Q Consensus 423 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~-------- 486 (741)
..+++.--++.. ++.+.+..-.++..++.|..+|+-.... ....|..+...=.+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 998875443332 7777777778889999999998755432 123454444444455665444333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCch------hHHHHHHHH---HhcCCHHHHHHHH
Q 004632 487 FHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIY------IDTALTDMY---AKCGDLQTAQRVF 557 (741)
Q Consensus 487 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~g~~~~A~~~~ 557 (741)
|+.+.+. .+.|-.+|--.+..-...|+.+...++++.++..-++.... +|..+=-++ ....+.+.+.+++
T Consensus 311 YE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333 35677788888888888999999999999998764332211 121111111 2467899999999
Q ss_pred HhcCC--C-CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 004632 558 DSMSE--R-NVV----SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFG 630 (741)
Q Consensus 558 ~~~~~--~-~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 630 (741)
+...+ | ... .|-....-..++.+...|.+++-.++. ..|...+|...+..-.+.++++.+..++++.++.+
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88774 3 233 344445555678899999999998876 78999999999999899999999999999999965
Q ss_pred CCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 004632 631 VEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN----GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTL 706 (741)
Q Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 706 (741)
+-+..+|...+..=...|+.+.|..+|+-+-..|. ...|..++..-...|.++.|..+|+++++..+... +|..
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 34678888888888899999999999998844443 34677888888899999999999999999887765 6666
Q ss_pred HHHHHh-----hcC-----------ChHHHHHHHHHHHh
Q 004632 707 LSNIYA-----EEG-----------NWDEFGKVRSIMEV 729 (741)
Q Consensus 707 l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 729 (741)
.+..-. +.| +...|..+|++...
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 665444 344 56678888887654
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=2.8e-16 Score=151.75 Aligned_cols=257 Identities=13% Similarity=0.147 Sum_probs=113.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 004632 470 MICGFYQNGNSLEAINLFHQMYLNCLEMDEVT-FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCG 548 (741)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (741)
+...+.+.|++++|++++++......+|+... +..+...+...++++.|...++.+.+.+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35556677788888887765444432343333 334444556678888888888888765543 55566666666 6888
Q ss_pred CHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004632 549 DLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGI-KPNEVTFMNILWACSHSGSVEEGKFYFNA 625 (741)
Q Consensus 549 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 625 (741)
++++|..++...-+ ++...+..++..+...++++++..+++++....- .++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888876643 5667778888889999999999999999876432 33556777788889999999999999999
Q ss_pred HHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 004632 626 MRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY 703 (741)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 703 (741)
+++.. +-+......++..+...|+.+++.++++.. ..+.++..+..++.++...|++++|...++++.+.+|+|+.+
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 99854 235778888999999999999988888877 235677788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 704 YTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 704 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
...++.++.+.|+.++|.++++++.+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988754
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-12 Score=119.97 Aligned_cols=357 Identities=12% Similarity=0.063 Sum_probs=196.8
Q ss_pred CcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHH
Q 004632 331 EYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSV--ASSLSA 408 (741)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~ 408 (741)
.|....-...-++.+.|....|++.|......-+..|.+.+....-..+.+.+.. ... |...|..-. ..+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHHH
Confidence 3444444455556677778888888877765555556555443332223222222 111 122111111 123344
Q ss_pred hhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHH
Q 004632 409 CGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLF 487 (741)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (741)
+......+++.+-.......|.+... .-+..+.+.-...++++|+..|+++.+.|+.-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl-------------------- 296 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL-------------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc--------------------
Confidence 55566777777777777777776666 555555555666667777777776665543210
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C
Q 004632 488 HQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-N 564 (741)
Q Consensus 488 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 564 (741)
-|..+|..++-.-..... ..++.+-.-.--+--+.|...+.+-|+-.++.++|...|+...+ | .
T Consensus 297 ---------~dmdlySN~LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~ 363 (559)
T KOG1155|consen 297 ---------DDMDLYSNVLYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY 363 (559)
T ss_pred ---------hhHHHHhHHHHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch
Confidence 012222222211111000 00000000000112234455555666666666666666666654 2 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 004632 565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVD 643 (741)
Q Consensus 565 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 643 (741)
...|+.+.+-|...++...|++-++++++ +.| |...|..|..+|...+.+.=|+-+|+++.... +.|...|.+|++
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~ 440 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGE 440 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 34566666667777777777777777776 555 44567777777777777777777777766632 335666777777
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCchhHHHHHHHHhhc
Q 004632 644 LLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSV-------TGTNDNGYYTLLSNIYAEE 714 (741)
Q Consensus 644 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~ 714 (741)
+|.+.++.++|++.|++. ....+...+..++..+-+.++.++|...+++-++ .+|+-..+..-|+.-+.+.
T Consensus 441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 777777777777777766 2334556666677777777777777777666665 2333333344456666666
Q ss_pred CChHHHHHHHHHHH
Q 004632 715 GNWDEFGKVRSIME 728 (741)
Q Consensus 715 g~~~~A~~~~~~~~ 728 (741)
+++++|-.+..+..
T Consensus 521 ~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 521 KDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHh
Confidence 77766666554443
No 42
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=9.8e-09 Score=105.94 Aligned_cols=679 Identities=12% Similarity=0.070 Sum_probs=362.5
Q ss_pred cchHHHHHHHHHHHHhCCCCC-hhhhHHHHHHHHccCChhhHHHhhccCCC---CCccchHHHHHHHHhcCChhHHHHHH
Q 004632 8 TNLRKLTRLHAHLLVTGLHYD-PPASTRLIESYAEMGSLRSSRLVFDTFKE---PDSFMWAVLIKCYMWNNFFEESILLY 83 (741)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 83 (741)
++++++.+ +..++..|- ...|-.-...+..+|++.+|-++-...++ .+..|-+.+=..=...|.+.--+.+|
T Consensus 342 qnpeLal~----~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYF 417 (1666)
T KOG0985|consen 342 QNPELALR----LAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYF 417 (1666)
T ss_pred cChHHHHH----hhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHH
Confidence 45555554 444444454 44788888899999999999998887765 45555555555556667776777777
Q ss_pred HHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHH-----HhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC
Q 004632 84 HKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRII-----KCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS 158 (741)
Q Consensus 84 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (741)
..+...| +.|..-=.-+.+.-..+|+.+-.+.++.+=. +.|--..+.--..-++.|.+.+-...+...|.+..+
T Consensus 418 g~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gq 496 (1666)
T KOG0985|consen 418 GTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQ 496 (1666)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcc
Confidence 7777666 4444333334444445555544444433221 112100001011122333333333333333333221
Q ss_pred -----------CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCC-CCChhhHHHHHHHhc----------------ccC
Q 004632 159 -----------RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGV-EPDFVTMLSLAEACG----------------ELC 210 (741)
Q Consensus 159 -----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~----------------~~~ 210 (741)
.-+--|-.+++.+.+ -+++.+.++...|.+... ..|. ..+...+- +..
T Consensus 497 f~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~di---e~I~DlFme~N~iQq~TSFLLdaLK~~ 572 (1666)
T KOG0985|consen 497 FKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADI---EQIVDLFMELNLIQQCTSFLLDALKLN 572 (1666)
T ss_pred hhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCCCcccH---HHHHHHHHHHHhhhhhHHHHHHHhcCC
Confidence 011123344444444 455666666555554221 1111 11111111 111
Q ss_pred ChhhH---HHHHHHHHHhcCC----------CchHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc-----hHHHHHH
Q 004632 211 SLRPA---RSIHGHVLRRKIK----------IDGPLGNSFIVMYSKCGDLLSAERTFVKIEK--RCTT-----SWTAMIS 270 (741)
Q Consensus 211 ~~~~a---~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~~~li~ 270 (741)
.++.+ .++++.-...++. .+..-+..+.+.|.+.|-...|.+.+..+.. +.++ .-.. +-
T Consensus 573 ~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEw-Lv 651 (1666)
T KOG0985|consen 573 SPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEW-LV 651 (1666)
T ss_pred ChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHH-HH
Confidence 22211 1222222222111 1122256677888888998888888877643 1111 1111 23
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHH-----------hCCCCCcchHHHHH
Q 004632 271 CYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIR-----------KGMGPEYDYLGPAL 339 (741)
Q Consensus 271 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~~~~p~~~~~~~~l 339 (741)
.+...-.++.+++.++.|...+++.|..+...+..-|...--.+...++|+.... -++. .|+.+.-..
T Consensus 652 ~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~s-eDpevh~KY 730 (1666)
T KOG0985|consen 652 NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFS-EDPEVHFKY 730 (1666)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccc-cCchHHHHH
Confidence 3445556888999999999988888887776666655554444555555554432 1233 778888889
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-------------------C------------CcccH------HHHHHHHHHcCCchH
Q 004632 340 IEFYAECGKMSECEKVIHAIGE-------------------R------------NILSW------NMLISEYARKGMSKE 382 (741)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~~-------------------~------------~~~~~------~~li~~~~~~~~~~~ 382 (741)
+.+.++.|++.+.+++.++-.- | |...| ...|..|.+.=++..
T Consensus 731 IqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~ 810 (1666)
T KOG0985|consen 731 IQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSR 810 (1666)
T ss_pred HHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcc
Confidence 9999999999999888765320 1 11111 112334444333333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-------------HHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCH
Q 004632 383 ALELLVQMQTWGLMPDSFSVAS-------------SLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFK 449 (741)
Q Consensus 383 a~~~~~~m~~~g~~p~~~~~~~-------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 449 (741)
.-.+...+.+.. -+...... +..-+.+.++...-...++..+..|..+..+++++...|..+++-
T Consensus 811 ~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNn 888 (1666)
T KOG0985|consen 811 TPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNN 888 (1666)
T ss_pred cchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCC
Confidence 222222222211 11111111 222234455555555666666666666666666666666544322
Q ss_pred HH----------------------------------------------------------------HHHHHHh-------
Q 004632 450 NL----------------------------------------------------------------AYLLFER------- 458 (741)
Q Consensus 450 ~~----------------------------------------------------------------a~~~~~~------- 458 (741)
.+ -.+++.+
T Consensus 889 PE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRq 968 (1666)
T KOG0985|consen 889 PERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQ 968 (1666)
T ss_pred hHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHH
Confidence 11 1111100
Q ss_pred ----cc------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccccHHhHHHHHHHHH
Q 004632 459 ----IQ------QKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEM--DEVTFLTAIQACSNIGQLEKGKWVHHKLI 526 (741)
Q Consensus 459 ----~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (741)
.. ..|+...+..+.++...+-+.+-+++++++.-.+..- +...-+.++-. +-..+..++.++.+++-
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhc
Confidence 00 0122233333344444444444444444443211100 00000111111 11111112222222221
Q ss_pred HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------------CCHHHHHHHHHHHHhcCCH
Q 004632 527 SYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE-------------------------RNVVSWSAMIDCYGMHGQL 581 (741)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~ 581 (741)
..+. | .+.......+-+++|..+|++..- ..+..|..+..+-.+.|.+
T Consensus 1048 nyDa-~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1048 NYDA-P------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred cCCc-h------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence 1110 0 011112223334444444443320 2345688888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 582 NDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 582 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
.+|++-|-+. .|+..|..++....+.|.|++.++++..+++....|...+ .|+-+|++.++..+-.+++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh---
Confidence 8888766432 3667899999999999999999999999988766666554 5788999999999888777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 004632 662 PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM 727 (741)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 727 (741)
..|+..-....+.-|...|.++.|.-+|... +-|..|+..++..|.+..|.+.-++.
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4688888889999999999999999888654 34888999999999999988776654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.8e-13 Score=134.72 Aligned_cols=275 Identities=13% Similarity=0.036 Sum_probs=206.8
Q ss_pred CHHHHHHHHHhccCC--Cc-hHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccccHHhHHH-H
Q 004632 448 FKNLAYLLFERIQQK--SV-VMWNSMICGFYQNGNSLEAINLFHQMYLNC--LEMDEVTFLTAIQACSNIGQLEKGKW-V 521 (741)
Q Consensus 448 ~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~-~ 521 (741)
..++|...|..++.. |. -....+..+|...+++++|..+|+.+.+.. ..-+..+|.+.+.-+-+. -+.. +
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 345555666554332 22 233445566666677777777776665532 112445555555443221 1111 2
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004632 522 HHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP 598 (741)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 598 (741)
-+.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+ | ...+|+.+..-+.....++.|...|+.++. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22333332 44688899999999999999999999998885 3 456888888888888999999999999887 677
Q ss_pred CHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004632 599 NEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLN 675 (741)
Q Consensus 599 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~ 675 (741)
... .|..+.-.|.++++++.|+-.|+++.+.+ +-+......++..+.+.|+.|+|+.+++++ -.+.++......+.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 554 78888889999999999999999998854 235667778888999999999999999999 34557777778888
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 676 GCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 676 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.+...+++++|+..++++.+.-|++..++..++.+|.+.|+.+.|+.-|.-+.+-
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999988877663
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.9e-12 Score=130.77 Aligned_cols=275 Identities=10% Similarity=0.013 Sum_probs=189.6
Q ss_pred cCCHHHHHHHHHhccCC--CchHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccccHHhHHH
Q 004632 446 CGFKNLAYLLFERIQQK--SVVMWNSM-ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFL--TAIQACSNIGQLEKGKW 520 (741)
Q Consensus 446 ~~~~~~a~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 520 (741)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666654432 22222222 33336677777777777777653 34433222 22456667777777777
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CH--------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004632 521 VHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSER---NV--------VSWSAMIDCYGMHGQLNDAASLFK 589 (741)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~A~~~~~ 589 (741)
.++.+.+..+. ++.....+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777766533 5666677777777778888888777776631 11 133333444444455666677777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCH
Q 004632 590 QMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANG 667 (741)
Q Consensus 590 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~ 667 (741)
.+.+. .+.+......+..++...|+.++|.+.+++..+. +|+..... +......++.+++++.+++. ..|.++
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 66543 2335667788888999999999999999988873 45553332 23334568999999999888 466677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 668 SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
..+..++..|...+++++|.+.++++.+..|++. .+..|+.++.+.|+.++|.++|++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999865 466899999999999999999997654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.7e-11 Score=113.11 Aligned_cols=313 Identities=12% Similarity=0.065 Sum_probs=224.3
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCch-HHHHHHHHHHhcCChHHHHHH
Q 004632 408 ACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVV-MWNSMICGFYQNGNSLEAINL 486 (741)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 486 (741)
.+...|..+.|+..+...+..-|-.=.+|..|.... .+.+.+..+...+...+.. .---+..++....+.+++++-
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777776666655544333443333332 2222222222222211110 001123455555677788887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCCHH---HHHHHHHhcC
Q 004632 487 FHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVR--KDIYIDTALTDMYAKCGDLQ---TAQRVFDSMS 561 (741)
Q Consensus 487 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~ 561 (741)
.+.....|.+.+...-+....+.....|+++|+.+|+++.+.++- .|..+|..++ |.+..+.. -|..++ .+.
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~-~id 326 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVS-NID 326 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHH-Hhc
Confidence 777778777777666666666777888999999999998876432 2445555444 33322211 122222 222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH
Q 004632 562 ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC 640 (741)
Q Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 640 (741)
+--+.|..++..-|.-.++.++|..+|++..+ +.|... .|+.+.+-|...++...|++-++++++.+ +.|-..|-.
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG 403 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG 403 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh
Confidence 33455667777888889999999999999999 788765 67777779999999999999999999854 457788889
Q ss_pred HHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 004632 641 MVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD 718 (741)
Q Consensus 641 l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 718 (741)
|+++|.-.+...-|+-+|+++ . .|.|+..|.+|+.+|.+.++.++|++.|+++...+..+..++..|+++|-+.++.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999 3 45588999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHh
Q 004632 719 EFGKVRSIMEV 729 (741)
Q Consensus 719 ~A~~~~~~~~~ 729 (741)
+|..+|++-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 99999998665
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.6e-11 Score=116.26 Aligned_cols=262 Identities=12% Similarity=0.069 Sum_probs=212.5
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHH
Q 004632 463 SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTD 542 (741)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 542 (741)
++.....-..-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-..+++.- +..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 3344445556677789999999999998775 35566666666778888888887777777887764 446778888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHH
Q 004632 543 MYAKCGDLQTAQRVFDSMSER---NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEE 618 (741)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 618 (741)
-|.-.|+..+|++.|.+...- -...|-.....|+-.|..++|+..+..+.+ +-|.. ..+..+.--|.+.++++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHH
Confidence 888899999999999987743 346899999999999999999999999888 45533 244455557888999999
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004632 619 GKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP---------FPANGSIWGALLNGCRIHKRIDVMKTI 689 (741)
Q Consensus 619 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (741)
|.++|.++.... +-|+..++-++-.....+.+.+|..+|+... .+.-..+++.|+.++++.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999998743 4467778888888888899999999998761 112455789999999999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+++++.+.|.++.++..++-+|...|+.+.|.+.|.+.+-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998654
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=1.6e-09 Score=106.46 Aligned_cols=543 Identities=12% Similarity=0.127 Sum_probs=318.9
Q ss_pred CCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHC-CCCCChhhHHHHH
Q 004632 125 GFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVRE-GVEPDFVTMLSLA 203 (741)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~ll 203 (741)
+..|+...|-.+-+++ +.+...+.+|+. .|-..+..+..+|++......|+..... .+......|...+
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 4466666666655544 777777777754 6777777888899998888888887654 2333344666777
Q ss_pred HHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc----------hHHHHHHHHH
Q 004632 204 EACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTT----------SWTAMISCYN 273 (741)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~ 273 (741)
......|-++-+..+|...++.. +....-.|..+++.+++++|-+.+..+...+.. .|.-+-.-.+
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 77777777777777777776553 333566677777778888877777776553322 2322222222
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHH
Q 004632 274 RSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECE 353 (741)
Q Consensus 274 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 353 (741)
++.+.-..+ ....+++.....--. .-..++..|+..|.+.|.+++|.
T Consensus 222 ~~p~~~~sl--------------------------------nvdaiiR~gi~rftD-q~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 222 QNPDKVQSL--------------------------------NVDAIIRGGIRRFTD-QLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred hCcchhccc--------------------------------CHHHHHHhhcccCcH-HHHHHHHHHHHHHHHhhhhHHHH
Confidence 222111111 111122222211100 11245566666666666666666
Q ss_pred HHHHhcCCC--CcccHHHHHHHHHH----------------cC------CchHHHHHHHHHHHCCC----------CC-C
Q 004632 354 KVIHAIGER--NILSWNMLISEYAR----------------KG------MSKEALELLVQMQTWGL----------MP-D 398 (741)
Q Consensus 354 ~~~~~~~~~--~~~~~~~li~~~~~----------------~~------~~~~a~~~~~~m~~~g~----------~p-~ 398 (741)
++|++.... ++.-|..+.++|.+ .+ +++-.+..|+.+...+. .| +
T Consensus 269 Dvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 269 DVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 666654321 12222222222221 11 12233444444443321 01 1
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHhcCC-----cch-hHHHHHHHHHhcCCHHHHHHHHHhccCCCch-------
Q 004632 399 SFSVASSLSACGNVGSLQLGLQIHGHVIKIDCK-----DEF-VQSSLIDMYSKCGFKNLAYLLFERIQQKSVV------- 465 (741)
Q Consensus 399 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------- 465 (741)
..++..-. -...|+..+-...+.++++.-.+ ... .+..+...|-..|+.+.|..+|++..+-+-.
T Consensus 349 V~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 349 VEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred HHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 11121111 12345666777778777764322 222 8899999999999999999999988765433
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------C------CHHHHHHHHHHHhccccHHhHHHHHHHHHHc
Q 004632 466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLE-----------M------DEVTFLTAIQACSNIGQLEKGKWVHHKLISY 528 (741)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (741)
+|......=.++.+++.|+.+++......-. + +...|...++..-..|-++....+++.+++.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444444555678899999988876532211 1 2234455555556677888888999999887
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC----CCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 004632 529 GVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE----RNV-VSWSAMIDCYGM---HGQLNDAASLFKQMLDSGIKPNE 600 (741)
Q Consensus 529 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~ 600 (741)
.+. ++.+.......+....-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|+++++ |++|..
T Consensus 507 ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 507 RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 655 333333333345566778999999998764 554 467777665554 3468999999999999 677765
Q ss_pred HHHHHHHH--HHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH---H
Q 004632 601 VTFMNILW--ACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWG---A 672 (741)
Q Consensus 601 ~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~---~ 672 (741)
.-+..|+- .-.+-|-...|+++++++.. ++++. ...|+..+.--...=-+....++++++ ..-|+..+-. .
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence 43323332 33455888899999999765 33333 345665554333222233334444444 2224433332 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHH
Q 004632 673 LLNGCRIHKRIDVMKTIEKELSVTGTN--DNGYYTLLSNIYAEEGNWDE 719 (741)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~ 719 (741)
....-.+.|..+.|..+|....+.-|+ +...|...-..=.+-||-+.
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 334457789999999999888876544 55678887777778888443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.6e-13 Score=130.06 Aligned_cols=280 Identities=12% Similarity=0.068 Sum_probs=221.1
Q ss_pred ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC------CchHHHHHHHHHHhcCChHHHHHHH
Q 004632 414 SLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK------SVVMWNSMICGFYQNGNSLEAINLF 487 (741)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (741)
+..+|...|..+.........+...++.+|...+++++|.++|+.+.+. +..+|++.+..+.+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 4567777777744444444448888899999999999999999888753 55677777655433 1222222
Q ss_pred HH-HHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHH
Q 004632 488 HQ-MYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVV 566 (741)
Q Consensus 488 ~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 566 (741)
.+ +... -+-.+.+|.++..+|.-+++.+.|++.|++.++.+.. ..++|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 22 2222 3556889999999999999999999999999886432 6788888888889999999999999999987776
Q ss_pred HHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHH
Q 004632 567 SWSA---MIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMV 642 (741)
Q Consensus 567 ~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 642 (741)
.|++ +...|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.++|+.+++++...... ++..--.-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 6665 56789999999999999999999 7885 456777777899999999999999999885432 444444567
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 643 DLLSRSGDIEGAFKMIHSMP--FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
..+...+++++|+..+++++ .|.+..++..++..|.+.|+.+.|+.-+--+..++|.-..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 77888999999999999993 5556778888899999999999999999999999998553
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=1.8e-11 Score=123.77 Aligned_cols=286 Identities=10% Similarity=0.019 Sum_probs=178.5
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHH
Q 004632 377 KGMSKEALELLVQMQTWGLMPDSFSVA-SSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYL 454 (741)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 454 (741)
.|+++.|.+.+....+.. +++..+. ....+....|+++.+.+.+..+.+..+.... ........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777776666654431 1222222 2222235666666666666666655444433 22222445555555555555
Q ss_pred HHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCC
Q 004632 455 LFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVR 531 (741)
Q Consensus 455 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (741)
.++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 55544332 2334444445555555555555555555444322111 110000
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004632 532 KDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW 608 (741)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 608 (741)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+ ..|+.... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHH
Confidence 01122223333334456666777777653 4777888889999999999999999999988 34555322 233
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004632 609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMK 687 (741)
Q Consensus 609 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 687 (741)
+....++.+++.+..+...+.. +-|+..+..++..+.+.|++++|.+.|++. ...|+...+..+..++.+.|+.++|.
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4445689999999999988753 345677888999999999999999999998 67799888889999999999999999
Q ss_pred HHHHHHhccC
Q 004632 688 TIEKELSVTG 697 (741)
Q Consensus 688 ~~~~~~~~~~ 697 (741)
.++++.+.+-
T Consensus 382 ~~~~~~l~~~ 391 (398)
T PRK10747 382 AMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhh
Confidence 9999987653
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.55 E-value=1e-09 Score=110.44 Aligned_cols=401 Identities=12% Similarity=0.042 Sum_probs=263.9
Q ss_pred hCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-
Q 004632 326 KGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFS- 401 (741)
Q Consensus 326 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~- 401 (741)
..+. .++.++..|.-.....|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-....-.|+..+
T Consensus 317 ~~~q-nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQ-NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3344 7888999999999999999999999998764 3445688999999999999999999988765432344333
Q ss_pred HHHHHHHh-hccCChHHHHHHHHHHHHhc--CC---cchhHHHHHHHHHhcC-----------CHHHHHHHHHhccCC--
Q 004632 402 VASSLSAC-GNVGSLQLGLQIHGHVIKID--CK---DEFVQSSLIDMYSKCG-----------FKNLAYLLFERIQQK-- 462 (741)
Q Consensus 402 ~~~ll~~~-~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~-- 462 (741)
+...-..| .+.+.++++..+-.+++... .. ....+..+.-+|...- ...++.+.+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333334 46788888888888887722 21 2225555555554321 223345555555432
Q ss_pred -CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHH-cCCCCCchhHHHH
Q 004632 463 -SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLIS-YGVRKDIYIDTAL 540 (741)
Q Consensus 463 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 540 (741)
|+...-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+...+ .|.... ....-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--LMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--hchhh
Confidence 33333334445667788888888888888876677788888888888888888888888876643 332111 11111
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CCHH-H--HHHHHH----HHHhcCCHHHHHHHHHH-----------------H
Q 004632 541 TDMYAKCGDLQTAQRVFDSMSE-----RNVV-S--WSAMID----CYGMHGQLNDAASLFKQ-----------------M 591 (741)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~--~~~l~~----~~~~~~~~~~A~~~~~~-----------------~ 591 (741)
++.-..-++.+++......+.. +.+. + -..+.+ .....++..+|.+...+ +
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 1222335666666555443321 0000 0 000000 00000111111111111 1
Q ss_pred HHcCCCCCH--------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 004632 592 LDSGIKPNE--------VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P 662 (741)
Q Consensus 592 ~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 662 (741)
....+.|.. ..|......+...+..++|...+.++.... +.....|...+..+...|++++|.+.|... .
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 111122221 134445557788889999999998887642 456778888888999999999999999888 3
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 663 -FPANGSIWGALLNGCRIHKRIDVMKT--IEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 663 -~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.|.+......++..+.+.|+..-|.. ++..+.+.+|.++.+|..|+.++.+.|+.+.|.+.|+-..+-
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 45567788899999999998877777 999999999999999999999999999999999999988773
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.1e-11 Score=124.10 Aligned_cols=79 Identities=16% Similarity=0.056 Sum_probs=43.6
Q ss_pred CChHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632 649 GDIEGAFKMIHSM--PFPANG--SIWGALLNGCRIHKRIDVMKTIEK--ELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722 (741)
Q Consensus 649 ~~~~~A~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 722 (741)
++.+.+.+.+++. ..|.++ ....++++.+.+.|++++|.+.++ .+.+..|++.. +..|+.++.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 3444455555444 222233 445566666666666666666666 34445554433 4466666666666666666
Q ss_pred HHHHHH
Q 004632 723 VRSIME 728 (741)
Q Consensus 723 ~~~~~~ 728 (741)
+|++..
T Consensus 392 ~~~~~l 397 (409)
T TIGR00540 392 MRQDSL 397 (409)
T ss_pred HHHHHH
Confidence 666543
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=4.6e-14 Score=136.31 Aligned_cols=250 Identities=15% Similarity=0.197 Sum_probs=107.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-cC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 004632 439 LIDMYSKCGFKNLAYLLFERI-QQ----KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG 513 (741)
Q Consensus 439 l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 513 (741)
+...+.+.|++++|.+++++. .. .++..|..+.......++++.|...++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355555666666666666322 11 23344445555555667777777777777654322 34445555554 5777
Q ss_pred cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004632 514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS-----ERNVVSWSAMIDCYGMHGQLNDAASLF 588 (741)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 588 (741)
++++|..++....+.. +++..+..++..+.+.++++++..+++.+. +++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777776654432 345556667777888888888888887754 246778888888999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCC
Q 004632 589 KQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPA 665 (741)
Q Consensus 589 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~ 665 (741)
+++.+ ..|+ ......++..+...|+.+++.++++...+.. +.++..+..++.+|...|+.++|+..+++. ..|.
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99999 6786 5578888889999999999999998887753 556778888999999999999999999998 3566
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 666 NGSIWGALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
|+.....++.++...|+.++|..+.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 888889999999999999999999888764
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2.3e-11 Score=123.79 Aligned_cols=283 Identities=7% Similarity=-0.078 Sum_probs=216.6
Q ss_pred hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC--CCch--HHHHHHHHHHhcCChHHHH
Q 004632 409 CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ--KSVV--MWNSMICGFYQNGNSLEAI 484 (741)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~A~ 484 (741)
....|+++.|.+.+....+..+.+...+-.....+...|+.+.|...+.+..+ |+.. ..-.....+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34679999999999998887766555667778889999999999999988644 3332 3333577888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHH---H----hcCCHHHHHHHH
Q 004632 485 NLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY---A----KCGDLQTAQRVF 557 (741)
Q Consensus 485 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~ 557 (741)
..++.+.+.. +-+......+...+...|+++.|.+.+..+.+.++.++......-..++ . .....+.....+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999874 4456778889999999999999999999999987553332211111111 2 222334555556
Q ss_pred HhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHH-HHHHhccCCHHHHHHHHHHHHHcCC
Q 004632 558 DSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVT--FMNI-LWACSHSGSVEEGKFYFNAMRIFGV 631 (741)
Q Consensus 558 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~--~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~ 631 (741)
....+ .++..+..+...+...|+.++|.+.+++..+ ..||... +..+ .......++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 55553 4788899999999999999999999999999 4566542 1122 223445688899999998888742
Q ss_pred CCCc--cHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 632 EPDL--QHYACMVDLLSRSGDIEGAFKMIHS--M-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 632 ~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
+-++ ....+++..+.+.|++++|.+.|++ . ...|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334 6677899999999999999999994 3 5678888888999999999999999999998754
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.6e-11 Score=110.09 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=92.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632 571 MIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFM-NILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG 649 (741)
Q Consensus 571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 649 (741)
+...+....+.+.|...+.+..+ ..|+..--+ .+.+.....|+++.|++.|+.+.+.+..--..+...|..+|...|
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 33444445566666666666666 345444222 233356666667777766666666544434556666666676777
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh--cCChHHHHHHHHH
Q 004632 650 DIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAE--EGNWDEFGKVRSI 726 (741)
Q Consensus 650 ~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 726 (741)
+.++...++.++ ...+.......+........-.+.|...+.+-+...|.-...+..+..-... -|..++-+..++.
T Consensus 264 ~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 264 KPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred CHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 777766666665 3344444444444444444445555555556566666544444444322222 2446666677777
Q ss_pred HHhCCCccCCC
Q 004632 727 MEVTGLKKVPG 737 (741)
Q Consensus 727 ~~~~~~~~~~~ 737 (741)
|....++.+|.
T Consensus 344 mvge~l~~~~~ 354 (389)
T COG2956 344 MVGEQLRRKPR 354 (389)
T ss_pred HHHHHHhhcCC
Confidence 77666666654
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-10 Score=112.67 Aligned_cols=273 Identities=13% Similarity=0.024 Sum_probs=214.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004632 435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSN 511 (741)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 511 (741)
+......-+...+++.+..++++.+.+.++ ..+..-|.++...|+..+-..+=.++.+. .+-.+.+|-++.--|..
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 556667777788899999999988876544 45555677888888888877777777765 45567888888888888
Q ss_pred cccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004632 512 IGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLF 588 (741)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 588 (741)
.|..++|++.|.+....+.. -...|-.+...|+-.|..+.|...+....+ -....+--+..-|.+.++.+.|.+.|
T Consensus 325 i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 89999999999988765433 234677788889999999999988876653 12222333445678899999999999
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCC----CCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 589 KQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIF--GVE----PDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 589 ~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
..+.. +.|+. ...+.+.-.....+.+.+|..+|+..+.. ... .-..+++.|+.+|.+.+++++|+..+++.
T Consensus 404 ~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99998 78855 46676666667789999999999988741 111 12446889999999999999999999998
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 004632 662 --PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIY 711 (741)
Q Consensus 662 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 711 (741)
..+.+..++..++..+...|+++.|.+.|.+++.+.|++..+-..|..+.
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999987777776554
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=3.8e-09 Score=103.87 Aligned_cols=533 Identities=11% Similarity=0.115 Sum_probs=269.3
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHh-CCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCC
Q 004632 97 IYPSVLRACSSLGDLGSGEKVHGRIIKC-GFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNA 175 (741)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 175 (741)
.+...+..+.++|++-..+..|+..+.. .+.-...+|...+......|-++.+.++++....-++..-+..|..++..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3444445555556666666665555432 222223355555555555566666666666655544444556666666666
Q ss_pred ChhHHHHHHHHhHHCC------CCCChhhHHHHHHHhcccCChhhH---HHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 004632 176 DVSEGLKMFHSMVREG------VEPDFVTMLSLAEACGELCSLRPA---RSIHGHVLRRKIKIDGPLGNSFIVMYSKCGD 246 (741)
Q Consensus 176 ~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 246 (741)
++++|.+.+....... .+.+...|..+....++..+.-.. ..+...+...-...-...|.+|.+.|++.|+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 6666666665554321 122333444444444443332222 2222222222122224567888888888888
Q ss_pred HHHHHHHHhccCCC--CcchHHHHHHHHHh----------------cCC------hhHHHHHHHHHHHCCC---------
Q 004632 247 LLSAERTFVKIEKR--CTTSWTAMISCYNR----------------SGW------FQKALESFVKMLEVKE--------- 293 (741)
Q Consensus 247 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~----------------~~~------~~~a~~~~~~m~~~g~--------- 293 (741)
++.|..++++.... .+.-++.+-.+|++ .++ ++-.+.-|+.+...+.
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 88888888765431 11112222222211 111 2222333444433211
Q ss_pred --CCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCC-----CcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCc--
Q 004632 294 --EPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGP-----EYDYLGPALIEFYAECGKMSECEKVIHAIGERNI-- 364 (741)
Q Consensus 294 --~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 364 (741)
+.+..+|..-... ..|+..+....+.+.++.- .| .....+..+...|-..|+++.|..+|++...-+-
T Consensus 344 Qn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred cCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 1223333333322 3355666667777776642 12 3346788899999999999999999998765332
Q ss_pred -----ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHH
Q 004632 365 -----LSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSL 439 (741)
Q Consensus 365 -----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 439 (741)
.+|......-.+..+++.|++++++... .|.... + .+...+..-++. ++ .+..+|..+
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~r-lh--------rSlkiWs~y 483 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQAR-LH--------RSLKIWSMY 483 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHHH-HH--------HhHHHHHHH
Confidence 3466666666778888888888777653 233221 0 011111111100 00 011144445
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH---hcc
Q 004632 440 IDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDE-VTFLTAIQAC---SNI 512 (741)
Q Consensus 440 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~---~~~ 512 (741)
+..--..|-++....+++++..- ++...-.....+-.+.-++++.+.|++-+..-..|+. ..|+..+.-+ ...
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 55555555556666666555432 2221111112222334455555555543333223332 2233333222 223
Q ss_pred ccHHhHHHHHHHHHHcCCCCCch--hHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHH
Q 004632 513 GQLEKGKWVHHKLISYGVRKDIY--IDTALTDMYAKCGDLQTAQRVFDSMSE-----RNVVSWSAMIDCYGMHGQLNDAA 585 (741)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~ 585 (741)
..++.|..+|+++.+ |.+|.-. .|-.....-..-|-...|.+++++... .-...||+.|.--...=.+....
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 345666666666666 4443221 111111222234566667777766552 12345677666544444455667
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChH
Q 004632 586 SLFKQMLDSGIKPNEVTFMNILW---ACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIE 652 (741)
Q Consensus 586 ~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 652 (741)
.+|+++++ .-|+...-...+. .-++.|..+.|..++..--+ ..+..+...|.+.=.-=.+.|+-+
T Consensus 643 ~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 643 EIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 78888887 4666654333333 44677888888888877666 334445566666666666777733
No 57
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=7.7e-08 Score=99.57 Aligned_cols=548 Identities=14% Similarity=0.102 Sum_probs=289.3
Q ss_pred hhHHHHHhHhcCChhHHHHHHccCCC--CCceeH----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHh
Q 004632 133 QTSILCTYGEFGCLDDARKVFDKMTS--RDVVSW----SSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEAC 206 (741)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 206 (741)
+..+...|.+.|-...|++-+..+.. +.++.- -.-+..|...-.++..++.++.|...+++.|..+...+..-+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566778888999989888777653 111111 112334556678899999999999988888877766665555
Q ss_pred cccCChhhHHHHHHHHHHh-----------cCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---------------C
Q 004632 207 GELCSLRPARSIHGHVLRR-----------KIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---------------R 260 (741)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~ 260 (741)
...=-.+.-.++|+..... ++..|+.+.-..|.+.++.|++.+.+++.++-.- .
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5443344444455444331 3566777888999999999999999988865421 1
Q ss_pred C---------cc-hHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCChhh-------------HHHHHH
Q 004632 261 C---------TT-SWTA------------MISCYNRSGWFQKALESFVKMLEVKEEPNLIT-------------LITVLG 305 (741)
Q Consensus 261 ~---------~~-~~~~------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-------------~~~ll~ 305 (741)
| .. .-.. .|..|.+.-+....-.+...+.+.. -+... ...+..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHHH
Confidence 1 00 0111 2223332222211111111111111 01111 122333
Q ss_pred HhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHH-H---HHHhc------CCCC------------
Q 004632 306 SCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECE-K---VIHAI------GERN------------ 363 (741)
Q Consensus 306 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~-~---~~~~~------~~~~------------ 363 (741)
-+.+.+++..-...++..+..|. .++.++++|+.+|..+++-.+-. + .++.. .++|
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~--~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGS--QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccC--cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 34455666666677777777774 56777888888877665433221 0 01100 0011
Q ss_pred -----------cccHHHHHHHHHHcCCchH---HH--------HHHHHHHHCCCC--CCHHHHHHHHHHhhccCChHHHH
Q 004632 364 -----------ILSWNMLISEYARKGMSKE---AL--------ELLVQMQTWGLM--PDSFSVASSLSACGNVGSLQLGL 419 (741)
Q Consensus 364 -----------~~~~~~li~~~~~~~~~~~---a~--------~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~ 419 (741)
-..|....+.+.+..+.+. ++ .++++....+++ .|+........++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 0123333444444444332 21 233333433322 34555556667777777777777
Q ss_pred HHHHHHHHhcCCcch---hHHHH---------------------------HHHHHhcCCHHHHHHHHHhccC--------
Q 004632 420 QIHGHVIKIDCKDEF---VQSSL---------------------------IDMYSKCGFKNLAYLLFERIQQ-------- 461 (741)
Q Consensus 420 ~~~~~~~~~~~~~~~---~~~~l---------------------------~~~~~~~~~~~~a~~~~~~~~~-------- 461 (741)
+++++++-.....+. ..+.+ .......+-+++|..+|+...-
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 777766543332211 22222 2233334455566665554321
Q ss_pred -----------------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHH
Q 004632 462 -----------------KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHK 524 (741)
Q Consensus 462 -----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (741)
..+..|+.+..+-.+.|...+|++-|=+ ..|+..|..++..+.+.|.+++-.+++..
T Consensus 1085 ie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred HHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1345667777777777777776665532 24566677777777777777777777776
Q ss_pred HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004632 525 LISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFM 604 (741)
Q Consensus 525 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 604 (741)
.++..-.|.+ -..++-+|++.++..+.++++. .||......+..-|...|.++.|.-+|.. ...|.
T Consensus 1159 aRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a 1224 (1666)
T KOG0985|consen 1159 ARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFA 1224 (1666)
T ss_pred HHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHH
Confidence 6665444443 3466677777777776665543 35555555555555555555555444432 22244
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004632 605 NILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRID 684 (741)
Q Consensus 605 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 684 (741)
.|...+...|++..|...-+++ .+..+|..+..+|...+.+.-|.-. .+..-....-+..++..|...|-++
T Consensus 1225 ~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1225 KLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHH
Confidence 4444445555555554443322 1334454444444444433322110 0011223334455566666666666
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632 685 VMKTIEKELSVTGTNDNGYYTLLSNIYA 712 (741)
Q Consensus 685 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 712 (741)
+-..+++..+.+..-....+..|+-.|.
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 6666666666555555555555554443
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.1e-10 Score=106.91 Aligned_cols=220 Identities=11% Similarity=0.038 Sum_probs=172.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 004632 474 FYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTA 553 (741)
Q Consensus 474 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 553 (741)
+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++....|....+.++. ++.+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 44578999999999999886544333 2666777789999999999999999887755 667777788888889999999
Q ss_pred HHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632 554 QRVFDSMSER---NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 554 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 629 (741)
..-|++...- ++..|-.+..+..+.+++++++..|++.+++ -|+ +..|+.....+..++++++|++.|+..++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998853 4556777777777889999999999999984 565 458998999999999999999999999873
Q ss_pred CCC-------CCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632 630 GVE-------PDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 630 ~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 698 (741)
... +.+.+-..++..-.+ +++.+|.++++++ ...| ....+..|.....+.|+.++|+++|++...+-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 211 112222233333333 8899999999998 4444 566889999999999999999999999876544
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=9.2e-10 Score=100.07 Aligned_cols=131 Identities=12% Similarity=0.108 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632 568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR 647 (741)
Q Consensus 568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (741)
..++..++.-..++++.+.+++....- +..|..--..+..+++..|++.+|+++|-++....++-+..-...|.++|.+
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR 440 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence 344455555555666666666665553 2222222233555666677777777777665443332222223345666777
Q ss_pred cCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 648 SGDIEGAFKMIHSMPFPANGSIW-GALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
+++.+.|.+++-++..+.+.-++ ..+..-|.+.+.+=-|.+.|+.+..++|.
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 77777777777666433333333 33344566777766666666666666654
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.6e-09 Score=103.25 Aligned_cols=281 Identities=15% Similarity=0.102 Sum_probs=162.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc--------CCCc----------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004632 437 SSLIDMYSKCGFKNLAYLLFERIQ--------QKSV----------VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMD 498 (741)
Q Consensus 437 ~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 498 (741)
......+...|++.+|+++++... ..|. .+--.+...+...|+.++|..++...++.+ .+|
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PAD 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCC
Confidence 334445555666666666665541 1110 122334455667888888888888888764 334
Q ss_pred HHHHHHHHH---HHhccccHHh--HHH------------HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004632 499 EVTFLTAIQ---ACSNIGQLEK--GKW------------VHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS 561 (741)
Q Consensus 499 ~~~~~~ll~---~~~~~~~~~~--a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (741)
........+ +.....++-. ++. ....+.. .-.-....-+.++.+| .+..+.+.++...+.
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 322221111 1111111111 111 1111111 0011111222333333 356677777777776
Q ss_pred CCC-HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------HHHH
Q 004632 562 ERN-VVSWSAMIDCY--GMHGQLNDAASLFKQMLDSGIKPNE--VTFMNILWACSHSGSVEEGKFYFN--------AMRI 628 (741)
Q Consensus 562 ~~~-~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~ 628 (741)
... ...+.+++... ++...+..+.+++...-+. .|.. ......+......|+++.|.+++. .+.+
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 432 23344444332 2233577888888888773 4544 344455567788999999999999 5555
Q ss_pred cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 629 FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-----PFPA----NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
.+. .+.+...++..+.+.++.+.|..++.+. ...+ -...+..++..-.++|+-++|...++++.+.+|+
T Consensus 413 ~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 413 AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 443 3456667888888888877777776665 1112 2233444445556789999999999999999999
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632 700 DNGYYTLLSNIYAEEGNWDEFGKVRSI 726 (741)
Q Consensus 700 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 726 (741)
+..+...+.-+|... |.+.|..+-.+
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999998777665 55666655543
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=7.2e-10 Score=103.08 Aligned_cols=284 Identities=11% Similarity=0.025 Sum_probs=137.5
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCCHHHHHHH
Q 004632 377 KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLL 455 (741)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 455 (741)
.|+|..|...+.+-.+.+-.| ...|.....+....|+.+.+-+++.++-+...++.. +.-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655543222 222333334445555666666655555555444333 444555555555555555444
Q ss_pred HHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCC
Q 004632 456 FERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRK 532 (741)
Q Consensus 456 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 532 (741)
+.++.+ .++........+|.+.|++.....++..+.+.|.-.+...-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 443332 2334444444555555555555555555554443322211000
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004632 533 DIYIDTALTDMYAKCGDLQTAQRVFDSMS---ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWA 609 (741)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 609 (741)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+++..|+.. ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 01122222222222222333333444443 1344444555555566666666666666666655555411 1113
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004632 610 CSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKT 688 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 688 (741)
+.+.++.+.-++..+.-.+.. +-++..+.+|+..|.+.+.|.+|.+.|+.. +..|+...+..+..++.+.|+.++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 344555555555555544421 223355555666666666666666666554 555666666666666666666666666
Q ss_pred HHHHHh
Q 004632 689 IEKELS 694 (741)
Q Consensus 689 ~~~~~~ 694 (741)
+.++.+
T Consensus 383 ~r~e~L 388 (400)
T COG3071 383 VRREAL 388 (400)
T ss_pred HHHHHH
Confidence 555554
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=6.8e-10 Score=103.25 Aligned_cols=278 Identities=14% Similarity=0.036 Sum_probs=195.2
Q ss_pred hCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHH
Q 004632 173 DNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAER 252 (741)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 252 (741)
-.|+|..|+++..+-.+.+-.| ...|.....+....||.+.+-.++.+..+.-..++..+.-.........||.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3889999999888877665444 345666777778888888888888888877666777777777788888888888877
Q ss_pred HHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh-------hHHHHHHHhhccCChhhHHHHHHH
Q 004632 253 TFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLI-------TLITVLGSCAGLGWLREGKSVHCQ 322 (741)
Q Consensus 253 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~ 322 (741)
-.+++.+ .++........+|.+.|++.....++..|.+.|.-.|.. +|..+++-+...+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~---------- 244 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG---------- 244 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc----------
Confidence 7666543 456677777888888888888888888888777654433 23333333222222
Q ss_pred HHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH
Q 004632 323 IIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS 399 (741)
Q Consensus 323 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 399 (741)
.+.-...++..+ ..++..-..++.-+.+.|+.++|.++..+..+.+..|+
T Consensus 245 --------------------------~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~- 297 (400)
T COG3071 245 --------------------------SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR- 297 (400)
T ss_pred --------------------------chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-
Confidence 222233344443 22455566777888889999999999999888877666
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhcc--CCCchHHHHHHHHHHhc
Q 004632 400 FSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQ--QKSVVMWNSMICGFYQN 477 (741)
Q Consensus 400 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~ 477 (741)
...+..+.+.++.+.-++..+...+..+.++..+..+...|.+.+.|.+|...|+... +++...|+.+..++.+.
T Consensus 298 ---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 298 ---LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL 374 (400)
T ss_pred ---HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc
Confidence 2233456677888888888888888777777777778888888777777777777554 34666677777777777
Q ss_pred CChHHHHHHHHHHH
Q 004632 478 GNSLEAINLFHQMY 491 (741)
Q Consensus 478 g~~~~A~~~~~~m~ 491 (741)
|++.+|.+..++..
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 77777777766654
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=7.9e-10 Score=99.46 Aligned_cols=263 Identities=11% Similarity=0.093 Sum_probs=137.3
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCc-ch---hHHHHHHHHHhcCCHHHH
Q 004632 377 KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKD-EF---VQSSLIDMYSKCGFKNLA 452 (741)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~a 452 (741)
..++++|.+.|-+|.+. -+-+..+..++...+.+.|..+.|+++++.+.+...-. .. +...+..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 56778888888888763 12223334455566777788888888887776654322 11 556677777777777777
Q ss_pred HHHHHhccCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccccHHhHHHHHHHH
Q 004632 453 YLLFERIQQKSV---VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEV----TFLTAIQACSNIGQLEKGKWVHHKL 525 (741)
Q Consensus 453 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (741)
+.+|..+.+.+. .....|+..|-...+|++|++.-+++.+.+-.+... .|.-+...+....+.+.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 777777765322 345556777777777777777777766654443322 2223333333344444444444444
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 004632 526 ISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE--VTF 603 (741)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~ 603 (741)
.+.+.+ .+..--.+ .+.+...|+++.|.+.++...+. .|+. .+.
T Consensus 207 lqa~~~-cvRAsi~l-------------------------------G~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl 252 (389)
T COG2956 207 LQADKK-CVRASIIL-------------------------------GRVELAKGDYQKAVEALERVLEQ--NPEYLSEVL 252 (389)
T ss_pred HhhCcc-ceehhhhh-------------------------------hHHHHhccchHHHHHHHHHHHHh--ChHHHHHHH
Confidence 433322 22222233 34444555555555555555552 2332 244
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004632 604 MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS-MPFPANGSIWGALLNG 676 (741)
Q Consensus 604 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~l~~~ 676 (741)
..|..+|.+.|+.++....+.++.+.. +.......+.+.-....-.+.|...+.+ +...|+...+..++..
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 444455555555555555555554422 2222223333333223333333333322 2444555555555444
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=1.1e-11 Score=110.97 Aligned_cols=223 Identities=11% Similarity=0.039 Sum_probs=183.4
Q ss_pred HHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHH-HHHHHHHHHhcC
Q 004632 503 LTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVS-WSAMIDCYGMHG 579 (741)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~ 579 (741)
..+.++|.+.|.+.+|...++...+. .|-+.+|..+...|.+..++..|+.++.+-.+ |..+| ..-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34556667777777777766665554 34455677777888888888888888887764 54444 445667788889
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHH
Q 004632 580 QLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658 (741)
Q Consensus 580 ~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (741)
+.++|.++|+...+ ..| +......+...|.-.++.+-|+.+++++++.|+ -++..|..++-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998 455 445666777788889999999999999999986 47889999999999999999999999
Q ss_pred HhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 659 HSM----P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 659 ~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
++. . .....++|.++....+..||+..|...|+-++..+|++...++.|+..-.+.|+.++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887 1 23356799999999999999999999999999999999999999999999999999999999988764
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=9e-09 Score=93.79 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=136.9
Q ss_pred cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-------HHHHHH
Q 004632 514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQ-------LNDAAS 586 (741)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~ 586 (741)
+-+.|.+++--+.+.- | ..-..++-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~I--P--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHI--P--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhhC--h--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 3455565555444321 1 2222344567889999999999998876444444333333333343 445566
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCC-
Q 004632 587 LFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFP- 664 (741)
Q Consensus 587 ~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 664 (741)
.|+-.-+.+..-|.. --.++..++.-..++++.+-++..+...=..-|...+ .+.++++..|.+.+|.++|-++..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh
Confidence 665554444443332 3445555666667899999999999884333344444 4889999999999999999998422
Q ss_pred -CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCccCCC
Q 004632 665 -ANGSIW-GALLNGCRIHKRIDVMKTIEKELSVTGTNDN-GYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKKVPG 737 (741)
Q Consensus 665 -~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 737 (741)
.+..+| ..|.+++...+..+.|-.++-+. ..|.+. ..+..+++.+++.|.+=-|.+.|..+.. ++|+|+
T Consensus 424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pE 495 (557)
T KOG3785|consen 424 IKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPE 495 (557)
T ss_pred hhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence 344455 45566678889998887665432 223322 3466778889999999888888887755 445553
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.41 E-value=3.2e-07 Score=91.93 Aligned_cols=576 Identities=13% Similarity=0.078 Sum_probs=278.0
Q ss_pred HHccCChhhHHHhhccCCCCCccc--hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHH
Q 004632 39 YAEMGSLRSSRLVFDTFKEPDSFM--WAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEK 116 (741)
Q Consensus 39 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 116 (741)
-.....+.+|+.+++.++..++.+ |..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|+|++|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 334455666666666665544333 4445556666666666666665431 24455666666666666666
Q ss_pred HHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh
Q 004632 117 VHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDF 196 (741)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 196 (741)
+-++. +|.+.....|.+-..-+-+.|++.+|.+++-.+..|+. -|..|-+.|..+..+.+.++--...+ .
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~ 882 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---H 882 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---h
Confidence 54433 23333344444444555566666666666666655543 34556666666666666554321111 1
Q ss_pred hhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 004632 197 VTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSG 276 (741)
Q Consensus 197 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 276 (741)
.|...+..-+-..|++..|+.-|-+.. -|.+-+++|-..+-+++|.++-..-...+..-.-.++ ++++-
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~fl--waksi 951 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFL--WAKSI 951 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHH--HHHhh
Confidence 234444455555666666655443221 2345555666666666666554432222222111222 22222
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHH
Q 004632 277 WFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVI 356 (741)
Q Consensus 277 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 356 (741)
--+.|..++++. | ....-+...+..+.++-|..+-+...+. ..+.+...+...+-..|++++|.+.+
T Consensus 952 ggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~----k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 952 GGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKD----KMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred CcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhc----cCccchhHHhhhhhhccchhhhhHhh
Confidence 234455555432 1 1122233344555566665555444443 33345556666667778888777766
Q ss_pred HhcCCCCc--ccHHHHH-----HHHHHcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 004632 357 HAIGERNI--LSWNMLI-----SEYARKG-MSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKI 428 (741)
Q Consensus 357 ~~~~~~~~--~~~~~li-----~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 428 (741)
-+...-+. .+|...+ .-+.+.| ++++|... +.+.+++..|.++-+ .
T Consensus 1019 veaiklntynitwcqavpsrfd~e~ir~gnkpe~av~m----------------------fi~dndwa~aervae----~ 1072 (1636)
T KOG3616|consen 1019 VEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEM----------------------FIHDNDWAAAERVAE----A 1072 (1636)
T ss_pred HHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHH----------------------hhhcccHHHHHHHHH----h
Confidence 55443222 1221111 1122222 23333222 334445555544322 2
Q ss_pred cCCcch--hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHH--------------
Q 004632 429 DCKDEF--VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYL-------------- 492 (741)
Q Consensus 429 ~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------------- 492 (741)
..++.. ++..-.+.....|++..|..++-+..+|+.. ++-|...+.|..|+.+-+...-
T Consensus 1073 h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~ 1147 (1636)
T KOG3616|consen 1073 HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEA 1147 (1636)
T ss_pred hChhhhHHHHhhhhhccccccchhhhhhheeecCCCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 222222 5666667777788888888888887777753 3445666777777766554311
Q ss_pred --CCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHH
Q 004632 493 --NCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSW 568 (741)
Q Consensus 493 --~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 568 (741)
.| ......|..-.+-..+.|++.+|...+-+.-+.... -..++.-+ +++|..+--+... .|....
T Consensus 1148 ~k~g-argvd~fvaqak~weq~gd~rkav~~~lkinrdst~-----nd~l~e~~-----~~kaadl~ikfl~~d~nme~i 1216 (1636)
T KOG3616|consen 1148 LKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTD-----NDALAEHC-----TEKAADLSIKFLMGDENMEVI 1216 (1636)
T ss_pred Hhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCC-----cHHHHHHH-----HHHHHhhhhhhcCCccchhhH
Confidence 11 111222223333334445555444443333111100 01111111 1111111111111 111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH---------------HHHHHHcCCCC
Q 004632 569 SAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFY---------------FNAMRIFGVEP 633 (741)
Q Consensus 569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~---------------~~~~~~~~~~~ 633 (741)
.+...++...|..+.|-+++--+-. -...+.++++...|.+|.++ +++.++..-+.
T Consensus 1217 ~aa~~al~~~~~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl 1287 (1636)
T KOG3616|consen 1217 GAAGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKL 1287 (1636)
T ss_pred HhcchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCcc
Confidence 2222223333333333333221110 11233444444455444443 33333311111
Q ss_pred ----CccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhc-cCCCCchhHHHH
Q 004632 634 ----DLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNG-CRIHKRIDVMKTIEKELSV-TGTNDNGYYTLL 707 (741)
Q Consensus 634 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l 707 (741)
++.. -.-++.+..+++|++|++.-.+-..+|-..-|..+..+ +...|+..+++.++++-=. .+|.|-.+|..+
T Consensus 1288 ~eli~vdv-iaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i 1366 (1636)
T KOG3616|consen 1288 DELIDVDV-IAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLI 1366 (1636)
T ss_pred ccccchhH-HHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHH
Confidence 1222 23467788888888888888877777776666665544 5778888888888776432 456666666655
Q ss_pred HH
Q 004632 708 SN 709 (741)
Q Consensus 708 ~~ 709 (741)
..
T Consensus 1367 ~e 1368 (1636)
T KOG3616|consen 1367 FE 1368 (1636)
T ss_pred HH
Confidence 43
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.4e-09 Score=98.58 Aligned_cols=268 Identities=10% Similarity=0.022 Sum_probs=176.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 004632 435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSM---ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSN 511 (741)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 511 (741)
....+..++...|+.++|+..|++...-|+.+...| .-.+.+.|+.+....+...+.... +-....|-.-......
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhh
Confidence 777788888888888888888887766555443332 223456677777777666654421 1222223333334455
Q ss_pred cccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004632 512 IGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLF 588 (741)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 588 (741)
.++++.|..+-++.++.+.. +...+-.-..++...|++++|.-.|+.... -+..+|..|+.+|...|++.+|..+-
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 67777777777777665432 344444444566777888888888876653 35678888888888888888888777
Q ss_pred HHHHHcCCCCCHHHHHHHH-HHH-hccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 004632 589 KQMLDSGIKPNEVTFMNIL-WAC-SHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM-PFP 664 (741)
Q Consensus 589 ~~~~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~ 664 (741)
++..+. +..+..+...+. ..| ....--++|.++++..++ +.|+ ....+.+...+...|..++++.++++. ...
T Consensus 392 n~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 392 NWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred HHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 776662 222334544442 222 233345677777777765 3344 455667777888888888888888877 667
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632 665 ANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL 707 (741)
Q Consensus 665 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 707 (741)
||....+.|+..++..+.+++|.+.|..++.++|++..+..-|
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 7778888888888888888888888888888888877655554
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=8.2e-11 Score=111.34 Aligned_cols=194 Identities=16% Similarity=0.104 Sum_probs=160.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 004632 534 IYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWA 609 (741)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~ 609 (741)
...+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+. .| +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 44566677778888888888888887653 3 4567788888899999999999999999884 44 44577777888
Q ss_pred HhccCCHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004632 610 CSHSGSVEEGKFYFNAMRIFGV-EPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVM 686 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 686 (741)
+...|++++|.+.++++.+... +.....+..++.++...|++++|...+++. ..+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999987322 223556777888999999999999999988 3444677888899999999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 687 KTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 687 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999888765
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=5.1e-07 Score=89.69 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 674 LNGCRIHKR-IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 674 ~~~~~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+.-+.+-.+ .++|..++.......+++...|..-..+|.+.|++.-|.+.+++...
T Consensus 631 gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 631 GEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred hhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444 57899999999999999999999999999999999999999998866
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=1.4e-10 Score=99.38 Aligned_cols=156 Identities=10% Similarity=0.010 Sum_probs=75.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632 571 MIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG 649 (741)
Q Consensus 571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 649 (741)
|.-.|...|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+++.+.. +-+..+.|..+..+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34444555555555555555555 344332 44444445555555555555555554422 123444445555555555
Q ss_pred ChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632 650 DIEGAFKMIHSMP----FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 650 ~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
++++|...|+++- .+--..+|.+++.+..+.|+.+.|.+.+++.++.+|+++.....++..++..|++-.|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555441 111233445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHh
Q 004632 726 IMEV 729 (741)
Q Consensus 726 ~~~~ 729 (741)
+...
T Consensus 198 ~~~~ 201 (250)
T COG3063 198 RYQQ 201 (250)
T ss_pred HHHh
Confidence 4444
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4e-08 Score=96.17 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=84.4
Q ss_pred cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH--------hcCC--CCHHHHHHHHHHHHhcCCHHH
Q 004632 514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFD--------SMSE--RNVVSWSAMIDCYGMHGQLND 583 (741)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~ 583 (741)
...++.+++....+........+.-.+++.....|+++.|.+++. .+.+ ..+.+...+...+.+.++.+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 355566666666555444445555666667777777777777777 3332 233445555556666666666
Q ss_pred HHHHHHHHHHc--CCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHH
Q 004632 584 AASLFKQMLDS--GIKPNEV----TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKM 657 (741)
Q Consensus 584 A~~~~~~~~~~--~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (741)
|..++.+.+.- .-.+... ++..+...-.+.|+-++|.++++++.+.. ++|..+...++.+|++. +.+.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 66666655431 0111112 22333333345577777777777777643 45666777777777664 56777776
Q ss_pred HHhC
Q 004632 658 IHSM 661 (741)
Q Consensus 658 ~~~~ 661 (741)
-..+
T Consensus 514 ~k~L 517 (652)
T KOG2376|consen 514 SKKL 517 (652)
T ss_pred hhcC
Confidence 6666
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=1.6e-07 Score=93.18 Aligned_cols=376 Identities=15% Similarity=0.124 Sum_probs=195.1
Q ss_pred HhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632 242 SKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS 318 (741)
Q Consensus 242 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 318 (741)
...|+-++|......-.. .+.+.|..+.-.+-...++++|+..|+..... .
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~------------------------ 105 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--E------------------------ 105 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--C------------------------
Confidence 344555555554444333 22334555555455555566666666655442 2
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcccHHHHHHHHHHcCCchHHHHHHHHHHHCC-
Q 004632 319 VHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE---RNILSWNMLISEYARKGMSKEALELLVQMQTWG- 394 (741)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g- 394 (741)
|++..++.-+.-.-++.++++.....-..+.+ ..-..|..++.++.-.|++..|..+++...+..
T Consensus 106 -----------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 106 -----------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred -----------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444433333333221 233456667777777777777777777776653
Q ss_pred CCCCHHHHHHHHHH------hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCc--hH
Q 004632 395 LMPDSFSVASSLSA------CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSV--VM 466 (741)
Q Consensus 395 ~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 466 (741)
-.|+...+...... ....|.++.|.+.+......-.+.-.....-...+.+.+++++|..++..+..+++ ..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 24555555433222 34556666666665544443333333555666777788888888888887776544 33
Q ss_pred HHH-HHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 004632 467 WNS-MICGFYQNGNSLEAI-NLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY 544 (741)
Q Consensus 467 ~~~-l~~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (741)
|.. +..++.+-.+.-+++ .+|....+. .+.....-..-+.......-.+....++..+.+.|+++-.....+ .|
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Ly 330 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LY 330 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HH
Confidence 332 333333222222333 445444332 111111111111112222333344455666666665543222222 22
Q ss_pred HhcCCHHH----HHHHHHhcC--------------CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HH
Q 004632 545 AKCGDLQT----AQRVFDSMS--------------ERNVVSW--SAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TF 603 (741)
Q Consensus 545 ~~~g~~~~----A~~~~~~~~--------------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~ 603 (741)
-.-...+- +..+...+. .|....| -.++..+-..|+++.|+.+++.+++ -.|+.+ -|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHH
Confidence 11111110 111111111 1333333 3466677788888888888888887 467654 55
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 604 MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 604 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
..-.+.+...|+.++|..++++..+.. .+|..+-..-+....++++.++|.+++...
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 555667778888888888888887754 355555546666777888888888877766
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=5.5e-10 Score=111.92 Aligned_cols=231 Identities=15% Similarity=0.190 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhccccHHhHHHHHHHHHHc-----CC-CCCchh-HHHHHHHHHhcCCHHHHHHHHHhcCC-------CC
Q 004632 499 EVTFLTAIQACSNIGQLEKGKWVHHKLISY-----GV-RKDIYI-DTALTDMYAKCGDLQTAQRVFDSMSE-------RN 564 (741)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~ 564 (741)
..+...+...|...|+++.|..+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++.. ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666777888888888888888776553 21 122222 23466788889999999988888762 21
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHH---cC
Q 004632 565 ----VVSWSAMIDCYGMHGQLNDAASLFKQMLDS-----GIK-PNEV-TFMNILWACSHSGSVEEGKFYFNAMRI---FG 630 (741)
Q Consensus 565 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~ 630 (741)
..+++.|...|.+.|++++|..+++++.+- |.. |... .++.+...|...+++++|..+++...+ .-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 347788888999999999998888876641 222 2333 466667789999999999999998877 11
Q ss_pred CCCC----ccHHHHHHHHHHhcCChHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 004632 631 VEPD----LQHYACMVDLLSRSGDIEGAFKMIHSM---------PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVT 696 (741)
Q Consensus 631 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 696 (741)
+.++ ..+++.|...|...|++++|.++++++ +..+ ....++.+...|.+.+.+++|..+|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467899999999999999999999987 1122 3557888999999999999999998887653
Q ss_pred ----CCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 697 ----GTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 697 ----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+|+.+ ..|..|+.+|-+.|++++|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45544 4699999999999999999999988763
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.34 E-value=2.9e-07 Score=92.24 Aligned_cols=584 Identities=16% Similarity=0.113 Sum_probs=295.0
Q ss_pred ccCChhhHHHhhccCCC-CCc-cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHH
Q 004632 41 EMGSLRSSRLVFDTFKE-PDS-FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVH 118 (741)
Q Consensus 41 ~~g~~~~A~~~~~~~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 118 (741)
..|+++.|..+++.... |+. .+|..+...-...|+..-|.+. |+..|++..++.++
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaerc----------------------faai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERC----------------------FAAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHH----------------------HHHHHHHHHHHHHH
Confidence 34667777777666543 443 3455555555555554444433 33445555555544
Q ss_pred HHHHH-------hCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC
Q 004632 119 GRIIK-------CGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREG 191 (741)
Q Consensus 119 ~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 191 (741)
+...- .|- .....|......-.-..++.+|..+|-+- ..-..-|..|..-.+|++|+.+-+. .|
T Consensus 514 d~~eiadeas~~~gg-dgt~fykvra~lail~kkfk~ae~ifleq-----n~te~aigmy~~lhkwde~i~lae~---~~ 584 (1636)
T KOG3616|consen 514 DILEIADEASIEIGG-DGTDFYKVRAMLAILEKKFKEAEMIFLEQ-----NATEEAIGMYQELHKWDEAIALAEA---KG 584 (1636)
T ss_pred HHHHHHHHHhHhhCC-CCchHHHHHHHHHHHHhhhhHHHHHHHhc-----ccHHHHHHHHHHHHhHHHHHHHHHh---cC
Confidence 43321 111 11223332222223334566776666432 1223345555666677777766543 23
Q ss_pred CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhc--cCCCCcchHHHHH
Q 004632 192 VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVK--IEKRCTTSWTAMI 269 (741)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li 269 (741)
.+.-...-.+.++++...|+-+.|-++- .+..--.+-|+.|.+.|....|...... ..-.|......+.
T Consensus 585 ~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia 655 (1636)
T KOG3616|consen 585 HPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIA 655 (1636)
T ss_pred ChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHH
Confidence 3222233344455555555555554431 1111224567778888887777655422 1123444445555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCC-cchHHHHHHHHHHhcCC
Q 004632 270 SCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPE-YDYLGPALIEFYAECGK 348 (741)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 348 (741)
.++.+..-+++|=++|+++.. +...+.++.+-+-+..|.++-+-. + |. -...-.....-+...|+
T Consensus 656 ~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----f-p~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 656 AALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----F-PEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----C-cHHHhhHHHHHhHHHHHHHh
Confidence 556666666666666666532 222333333333334443332211 1 11 11122233334455566
Q ss_pred hHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 004632 349 MSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKI 428 (741)
Q Consensus 349 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 428 (741)
++.|+..|-+. ......+.+......+.+|+.+++.+++.. ..+.-|..+...|+..|+++.|+++|...-
T Consensus 722 ~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-- 792 (1636)
T KOG3616|consen 722 LDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-- 792 (1636)
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc--
Confidence 66666655432 122334556667788888888888777642 223345556666777777777777765321
Q ss_pred cCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCC--chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004632 429 DCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKS--VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAI 506 (741)
Q Consensus 429 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 506 (741)
.++-.+.+|.+.|+|+.|.++-.+...|. ...|-+-..-+-+.|++.+|.++|-.+. .|+ ..|
T Consensus 793 ------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~ai 857 (1636)
T KOG3616|consen 793 ------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAI 857 (1636)
T ss_pred ------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHH
Confidence 34556667777777777777766665553 2344444455556666666666654331 233 223
Q ss_pred HHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004632 507 QACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAAS 586 (741)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 586 (741)
..|-+.|..+...++.++-. ...-..+...+..-|...|++..|..-|-+.. -|.+-+..|...+-|++|.+
T Consensus 858 qmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHH
Confidence 44555555555554443321 11112233344455556666666666554432 24444555555555555554
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 004632 587 LFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN 666 (741)
Q Consensus 587 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 666 (741)
+-+. .| -.|..-....+.+-+- --+.|.+++.+. | ....-++..+..+.++-|+++-+-..-...
T Consensus 930 iakt---eg-g~n~~k~v~flwaksi--ggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~ 994 (1636)
T KOG3616|consen 930 IAKT---EG-GANAEKHVAFLWAKSI--GGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM 994 (1636)
T ss_pred HHhc---cc-cccHHHHHHHHHHHhh--CcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC
Confidence 4321 11 1122222222222221 223445544431 2 122233444566667777666554422233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH----HHHHhhcC-ChHHHHHHHH
Q 004632 667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL----SNIYAEEG-NWDEFGKVRS 725 (741)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l----~~~~~~~g-~~~~A~~~~~ 725 (741)
+.+...+...+-..|++++|-+.|-++++++.-|.+..... ---..+.| +.++|..+|-
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhh
Confidence 34445566667788999999999988888887776543322 11245666 6667776654
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=4.1e-10 Score=119.27 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=175.6
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 004632 479 NSLEAINLFHQMYLNCLEMD-EVTFLTAIQACS---------NIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCG 548 (741)
Q Consensus 479 ~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 548 (741)
..++|..+|++..+. .|+ ...+..+..++. ..+++++|...++++.+.++. +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 356788888877764 444 334444433332 335578899999998887644 6677778888888999
Q ss_pred CHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 004632 549 DLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFN 624 (741)
Q Consensus 549 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 624 (741)
++++|...|++..+ | +...+..+...+...|++++|+..++++.+ +.|+.. .+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998774 4 466788888999999999999999999999 677654 33444555667899999999999
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 625 AMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANG-SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
++.+...+-++..+..++.++...|+.++|...++++ +.+|+. .....+...+...| +.|...++++.+..-..+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 9887542224556778888999999999999999988 444443 34455555566666 4777777766654322222
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 703 YYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 703 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
....+..+|.-.|+.+.+... +++.+.|
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 223366778888998888877 7777644
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=2e-07 Score=94.41 Aligned_cols=433 Identities=15% Similarity=0.094 Sum_probs=227.6
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHH
Q 004632 227 IKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPN-LITLIT 302 (741)
Q Consensus 227 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ 302 (741)
+.-|..+|..+.-+..+.|+++.+-+.|++... .....|+.+...+...|....|+.+++.-......|+ ...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 444556666666666666666666666666543 2233566666666666666666666665443322232 222333
Q ss_pred HHHHhh-ccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHH-----
Q 004632 303 VLGSCA-GLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYAR----- 376 (741)
Q Consensus 303 ll~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~----- 376 (741)
.-+.|. +.+..+++..+-..++....... ++ .....|..+.-+|..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~---------------~~-------------l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQR---------------SH-------------LKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhh---------------hh-------------hhhhHHHHHHHHHHhHhhcC
Confidence 333332 23455555555444444110000 00 011112222111111
Q ss_pred ------cCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch-hHHHHHHHHHhcCC
Q 004632 377 ------KGMSKEALELLVQMQTWG-LMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF-VQSSLIDMYSKCGF 448 (741)
Q Consensus 377 ------~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 448 (741)
.....++++.+++..+.+ -.|+..- .+.--++..++++.|.+..++.++.+..+.. .+..++-++...++
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 011234555566655542 1222222 2222244556666666666666666444444 66666666666666
Q ss_pred HHHHHHHHHhccCCCchHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHH
Q 004632 449 KNLAYLLFERIQQKSVVMWNSM---ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKL 525 (741)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (741)
+.+|+.+.+.....-...++.+ +..-..-++.++++.....+... --+... ....++-....+....+
T Consensus 529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~-------~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYG-------VQQTLDEGKLLRLKAGL 599 (799)
T ss_pred hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhh-------Hhhhhhhhhhhhhhccc
Confidence 6666666554433211111111 11111234455555444443321 000000 00001111111111111
Q ss_pred H--HcCCCCCchhHHHHHHHHHhc---CCHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004632 526 I--SYGVRKDIYIDTALTDMYAKC---GDLQTAQRVFDSMSERN------VVSWSAMIDCYGMHGQLNDAASLFKQMLDS 594 (741)
Q Consensus 526 ~--~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 594 (741)
. .......+.++..+....... -.++.....+.....|+ ...|......+.+.++.++|...+.+...
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~- 678 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK- 678 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-
Confidence 0 001111222333222222111 11111111111112233 23456666778888999999988888887
Q ss_pred CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHH--HHHhC-C-CCCCHH
Q 004632 595 GIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFK--MIHSM-P-FPANGS 668 (741)
Q Consensus 595 ~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~-~-~~~~~~ 668 (741)
+.|-. ..|......+...|.+++|.+.|...... .|+ +.+..+++.++.+.|+..-|.. ++..+ . .+.+..
T Consensus 679 -~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 679 -IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred -cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 55644 46666667888999999999999998874 344 7788899999999998887777 88887 3 456889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
.|..++..+.+.|+.++|.++|..+.++.+.+|.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999887774
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=6.7e-11 Score=106.14 Aligned_cols=236 Identities=14% Similarity=0.060 Sum_probs=175.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 004632 468 NSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKC 547 (741)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 547 (741)
+.+..+|.+.|.+.+|...++....+ .|-+.||..+-++|.+..++..|..++.+-.+. ++-++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44556666666666666666665553 344556666666666666666666666655543 223444444555666677
Q ss_pred CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 004632 548 GDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFN 624 (741)
Q Consensus 548 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 624 (741)
++.++|.++++...+ .++....++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 788888888887664 35666667777888889999999999999998865 67788888888899999999999999
Q ss_pred HHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004632 625 AMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTND 700 (741)
Q Consensus 625 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 700 (741)
++....-.|+ ...|-.+.......|++..|.+.|+-. ..+.+...+++|.-...+.|+.++|..++..+....|.-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9988443344 566777888888999999999999887 456678899999988899999999999999999999986
Q ss_pred chhHHHH
Q 004632 701 NGYYTLL 707 (741)
Q Consensus 701 ~~~~~~l 707 (741)
.+....|
T Consensus 463 ~E~~~Nl 469 (478)
T KOG1129|consen 463 AEVTTNL 469 (478)
T ss_pred cccccce
Confidence 5544444
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=6e-07 Score=93.43 Aligned_cols=357 Identities=12% Similarity=0.057 Sum_probs=213.4
Q ss_pred HHHHHHHHhcC---CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 004632 350 SECEKVIHAIG---ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVI 426 (741)
Q Consensus 350 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (741)
..|+..+.... ..+...||.|.-. ...|++.-+...|-+-... -+....+|..+.-.+....+++.|...+....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35556665543 3455667766554 5556777776666665543 23345566666666788888999999999888
Q ss_pred HhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhcc-----C---CCchHHHHHHHHHHhcCChHHHHHHHHHHHH------
Q 004632 427 KIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQ-----Q---KSVVMWNSMICGFYQNGNSLEAINLFHQMYL------ 492 (741)
Q Consensus 427 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~------ 492 (741)
...|.+...+-.........|+.-++..+|..-. + ++..-|-....-...+|+.++-+...+.+-.
T Consensus 878 SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 878 SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 8888877777666666777787777777776421 1 1212222222233455665554443333221
Q ss_pred ---CCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHc-CCCCCchhHH----HHHHHHHhcCCHHHHHHHHHhcCC-C
Q 004632 493 ---NCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISY-GVRKDIYIDT----ALTDMYAKCGDLQTAQRVFDSMSE-R 563 (741)
Q Consensus 493 ---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~-~ 563 (741)
.+.+.+...|.......-+.+.+..+.+...+++.. ..+.+...|+ .+...+...|.++.|..-+..... .
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 234455667777777777777777776666554320 0111222333 445566777888877776665542 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHH
Q 004632 564 NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV----TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYA 639 (741)
Q Consensus 564 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 639 (741)
+...-..-+.. .-.|+++++++.|+++.. +.-+.. ....++.+....+..+.|...+-+..... +|+..+..
T Consensus 1038 dEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll 1113 (1238)
T KOG1127|consen 1038 DEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLL 1113 (1238)
T ss_pred HHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHH
Confidence 32222222222 345799999999999987 443332 33344445566778888888877777643 45666666
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632 640 CMVDLLSRSGDIEGAFKMIHSMP-------FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA 712 (741)
Q Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 712 (741)
.+.-.+.-..+-......++++. +.-.+.....+ .+...|+-....+.+++....+|.++..|..|..-|.
T Consensus 1114 ~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 66555554444443333444431 11111111111 2567889999999999999999999999999986555
Q ss_pred hc
Q 004632 713 EE 714 (741)
Q Consensus 713 ~~ 714 (741)
+.
T Consensus 1192 ~~ 1193 (1238)
T KOG1127|consen 1192 QR 1193 (1238)
T ss_pred HH
Confidence 43
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=6.8e-10 Score=117.60 Aligned_cols=211 Identities=14% Similarity=0.063 Sum_probs=166.7
Q ss_pred ccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH---------hcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCC
Q 004632 513 GQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA---------KCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQ 580 (741)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 580 (741)
++.++|...+++..+..+. +...+..+..++. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567899999999876543 3445555555443 23458899999998874 3 66788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHH
Q 004632 581 LNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH 659 (741)
Q Consensus 581 ~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (741)
+++|...|+++.+ +.|+.. .+..+...+...|++++|...++++.+.... +...+..++..+...|++++|+..++
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999 678654 7777888999999999999999999985422 22333344555677899999999998
Q ss_pred hC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 660 SM--PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 660 ~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+. ..+| ++..+..+..++...|++++|...++++....|.+......++..|...|+ +|...++++.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 87 3345 455677788888999999999999999998999888889999989998884 88888888766
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=2.1e-07 Score=94.38 Aligned_cols=242 Identities=12% Similarity=0.079 Sum_probs=142.2
Q ss_pred CCC-CChhhhHHHHH--HHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhc-C--------C
Q 004632 24 GLH-YDPPASTRLIE--SYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIRE-Q--------A 91 (741)
Q Consensus 24 ~~~-~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~ 91 (741)
|++ =|+.|-..+++ .|...|+.+.|-+-.+-++ +-..|..|.+.|.+..+.+-|.-.+-.|... | -
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 443 36666666654 5777888888877766655 4567999999999998888887777666431 1 1
Q ss_pred CCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCC-CCceeHHHHHHH
Q 004632 92 TISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS-RDVVSWSSIIAS 170 (741)
Q Consensus 92 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~ 170 (741)
.|+ .+=..+...-...|.+++|+.++.+-.+. ..|-+.|...|.+++|.++-+.-.+ .=..||......
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY 867 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence 122 22122222334668899999998887654 3455778889999999998765443 112355556666
Q ss_pred HHhCCChhHHHHHHHHhHHC----------C---------CCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCch
Q 004632 171 YFDNADVSEGLKMFHSMVRE----------G---------VEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDG 231 (741)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~----------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (741)
+-..++.+.|++.|++.... . -..|...|..--.-+-..|+.+.|..+|.....
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 66678888888888763211 0 011222222222223334455555554444322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 004632 232 PLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKM 288 (741)
Q Consensus 232 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 288 (741)
|-+++...|-+|+.++|-++-++- .|..+...+.+.|-..|++.+|+.+|.+.
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334444555555555555554432 23334555666666666666666666554
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=1.1e-07 Score=96.97 Aligned_cols=49 Identities=10% Similarity=0.010 Sum_probs=42.7
Q ss_pred HhcCC-HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632 678 RIHKR-IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSI 726 (741)
Q Consensus 678 ~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 726 (741)
....+ .++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 467 ~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 467 LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 34444 68999999999999999999999999999999999999887764
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.2e-09 Score=105.64 Aligned_cols=219 Identities=10% Similarity=-0.030 Sum_probs=145.0
Q ss_pred hcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 004632 476 QNGNSLEAINLFHQMYLNC-LEMD--EVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQT 552 (741)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (741)
..+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|++..+..+. +...++.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3466777888888877542 2222 345666667778888888888888888876543 56778888888888888888
Q ss_pred HHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632 553 AQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 553 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 629 (741)
|...|++..+ | +..+|..+..++...|++++|.+.+++..+ ..|+..........+...+++++|...+.+....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888763 4 456777788888888888888888888887 5665542222222344567788888888765542
Q ss_pred CCCCCccHHHHHHHHHHhcCChHHH--HHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 630 GVEPDLQHYACMVDLLSRSGDIEGA--FKMIHSM-PF-----PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~A--~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
. .|+...+ .+. ....|+..++ ++.+.+. .. +.....|..++..+.+.|++++|...|+++++.+|.+.
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2 2332222 222 2334554333 3333222 11 12345777888888888888888888888888887543
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.7e-07 Score=87.52 Aligned_cols=301 Identities=9% Similarity=-0.040 Sum_probs=180.8
Q ss_pred CCChhhHHHHHHHhh--ccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHH--
Q 004632 294 EPNLITLITVLGSCA--GLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNM-- 369 (741)
Q Consensus 294 ~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 369 (741)
.|...+...-+.+++ -.++-..+...+--+......|++......+...+...|+.++|+..|++..--|+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 333334333444332 2344444445554455555556888888888888888888888888888766443332222
Q ss_pred -HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCC
Q 004632 370 -LISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGF 448 (741)
Q Consensus 370 -li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 448 (741)
..-.+.+.|++++...+...+.... .-+...|..-........+++.|..+-++.++.++.....+-.-...+...++
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc
Confidence 2233456777777777777766531 12223333333334566778888888888888777777777677777777888
Q ss_pred HHHHHHHHHhccC--C-CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-hccccHHhHHHHHH
Q 004632 449 KNLAYLLFERIQQ--K-SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAI-QAC-SNIGQLEKGKWVHH 523 (741)
Q Consensus 449 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll-~~~-~~~~~~~~a~~~~~ 523 (741)
.++|.-.|+.... | +..+|.-++.+|...|++.+|..+-+...+. .+.+..+.+.+. ..| ....-.++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 8888877776543 2 5577888888888888888877666554432 233444444432 222 22333455666666
Q ss_pred HHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004632 524 KLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS--ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN 599 (741)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 599 (741)
......+. -....+.+.+.+...|+..++..++++.. .||....+.|...+...+.+.+|++.|..+.. +.|+
T Consensus 429 k~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 429 KSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred hhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 55443221 12233455556666666666666666655 36666666666666666666666666666666 4554
No 84
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=4.3e-09 Score=99.48 Aligned_cols=199 Identities=12% Similarity=0.128 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 004632 465 VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY 544 (741)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (741)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------------
Confidence 345555556666666666666666655432 22233344444444444444444444444443321
Q ss_pred HhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 004632 545 AKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYF 623 (741)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 623 (741)
.+...+..+...+...|++++|.+.++++.+....|. ...+..+...+...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2333455555555666666666666666655322222 234445555666667777777777
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 004632 624 NAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG 697 (741)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 697 (741)
++..+.. +.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|+.++|..+.+.+....
T Consensus 159 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6666532 223445666666666777777777666665 1 23344555555566666777777777666665543
No 85
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=3.6e-11 Score=80.12 Aligned_cols=50 Identities=30% Similarity=0.548 Sum_probs=45.8
Q ss_pred CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcc
Q 004632 159 RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGE 208 (741)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 208 (741)
||..+||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988874
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=1e-08 Score=88.26 Aligned_cols=189 Identities=13% Similarity=0.056 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 004632 539 ALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSG 614 (741)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~ 614 (741)
.+.-.|...|+...|..-+++..+ | +..+|..+...|-+.|..+.|.+.|+++.+ +.|+. ...|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 345567788888888888887774 3 345777788888888888888888888888 67754 46777777788888
Q ss_pred CHHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004632 615 SVEEGKFYFNAMRIF-GVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEK 691 (741)
Q Consensus 615 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (741)
++++|...|+++... ...-...+|..++-+..+.|+.+.|.+.|++. -.+..+.....+.....+.|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888888772 22233567888888888888888888888887 344456677778888888888888888888
Q ss_pred HHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 692 ELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 692 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+.....+.+...+-..+.+-...||.+.|.++=.++.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888777777777777777778888877766555544
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.3e-10 Score=77.33 Aligned_cols=50 Identities=30% Similarity=0.564 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 004632 563 RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSH 612 (741)
Q Consensus 563 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 612 (741)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999999999999999999888864
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1e-06 Score=89.68 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=150.1
Q ss_pred ChhhhhHHH--HHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHC-C--------CCCChh
Q 004632 129 DDVIQTSIL--CTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVRE-G--------VEPDFV 197 (741)
Q Consensus 129 ~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~~~~~ 197 (741)
|..+...++ +.|..-|+.+.|.+-++.+. +...|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 444555554 35667788888877766654 3457888888888888888887777666442 1 1122 2
Q ss_pred hHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcchHHHHHHHHHhcC
Q 004632 198 TMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKR-CTTSWTAMISCYNRSG 276 (741)
Q Consensus 198 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~ 276 (741)
+-..+.-.....|.+++|+.+|.+-.+. ..|-..|-..|.+++|.++-+.-..- -..+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222222334678888888888877654 33445677788899988887653331 1235666666677777
Q ss_pred ChhHHHHHHHHHH----------HCC---------CCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHH
Q 004632 277 WFQKALESFVKML----------EVK---------EEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGP 337 (741)
Q Consensus 277 ~~~~a~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 337 (741)
+.+.|++.|++.. ... -..|...|..-...+...|+.+.|+.+|+...+ +-
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~f 942 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YF 942 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hh
Confidence 8888887776531 110 123444555555555666777777777654443 23
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHH
Q 004632 338 ALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQ 391 (741)
Q Consensus 338 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 391 (741)
.++++.+-.|+.++|..+-++- .|....-.+.+.|-..|++.+|..+|.+.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4555566677777777666553 255566667788888888888888887765
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=2.7e-08 Score=100.01 Aligned_cols=198 Identities=11% Similarity=0.108 Sum_probs=125.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----CC-CCC-CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHH
Q 004632 469 SMICGFYQNGNSLEAINLFHQMYL-----NC-LEM-DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALT 541 (741)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 541 (741)
.+...|...+++.+|..+|+++.. .| ..| -..++..+...|.+.|++++|...++...+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------- 311 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------- 311 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence 455567777777777777777653 11 111 123444445555666666655555544422
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHH
Q 004632 542 DMYAKCGDLQTAQRVFDSMS---ERNV-VSWSAMIDCYGMHGQLNDAASLFKQMLDS---GIKPNE----VTFMNILWAC 610 (741)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~----~~~~~ll~~~ 610 (741)
++++.. .|.+ ..++.++..+...+++++|..++++..+. -+.++. .++..|...|
T Consensus 312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 111100 1222 13445556667777777777777765542 122222 3788888899
Q ss_pred hccCCHHHHHHHHHHHHHc----CC--CC-CccHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCCHHHHHHHH
Q 004632 611 SHSGSVEEGKFYFNAMRIF----GV--EP-DLQHYACMVDLLSRSGDIEGAFKMIHSM--------P-FPANGSIWGALL 674 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~-~~~~~~~~~~l~ 674 (741)
...|++++|.+++++++.. +. .+ ....++.+...|.+.+++.+|.++|.+. + .+....+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 9999999999999888762 11 11 2456778888898888888888888776 2 223355788999
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 004632 675 NGCRIHKRIDVMKTIEKELS 694 (741)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~~~ 694 (741)
..|...|+++.|.++.+++.
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 99999999999999988877
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.6e-07 Score=89.77 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=50.3
Q ss_pred HHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-cccHHHHHHHHHHcCCch
Q 004632 305 GSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGE--RN-ILSWNMLISEYARKGMSK 381 (741)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~ 381 (741)
.+....|+++.|...|.+.+.. .|.+...+..-..+|.+.|++++|.+--.+-.+ |+ ...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 3445567777777777666543 356666666666666666666666554443322 22 234666666666666666
Q ss_pred HHHHHHHHHHH
Q 004632 382 EALELLVQMQT 392 (741)
Q Consensus 382 ~a~~~~~~m~~ 392 (741)
+|+.-|.+-++
T Consensus 88 eA~~ay~~GL~ 98 (539)
T KOG0548|consen 88 EAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=3.8e-08 Score=95.15 Aligned_cols=213 Identities=14% Similarity=0.042 Sum_probs=142.3
Q ss_pred ccHHhHHHHHHHHHHcC-CCC--CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHH
Q 004632 513 GQLEKGKWVHHKLISYG-VRK--DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAAS 586 (741)
Q Consensus 513 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~ 586 (741)
+..+.+..-+.++.... ..| ....+..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666666665422 122 234566777788888999999988887763 3 56788888888999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 004632 587 LFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PF 663 (741)
Q Consensus 587 ~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~ 663 (741)
.|++..+ +.|+. .++..+..++...|++++|.+.+++..+.. |+..........+...++.++|...+++. ..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999988 67764 477777778888899999999999888743 33322222223344567889998888665 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH--HHHHHH----HhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632 664 PANGSIWGALLNGCRIHKRIDVM--KTIEKE----LSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 664 ~~~~~~~~~l~~~~~~~g~~~~a--~~~~~~----~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
+|+...+ .......|+...+ .+.+.+ ..++.|+.+.+|..|+.+|.+.|++++|+..|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3332222 2222334444332 222222 2244566677899999999999999999999998876543
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=3.1e-06 Score=88.38 Aligned_cols=577 Identities=12% Similarity=0.049 Sum_probs=286.3
Q ss_pred hhhhHHHHHhHhcCChhHHHHHHccCCC---CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHH--HHH
Q 004632 131 VIQTSILCTYGEFGCLDDARKVFDKMTS---RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSL--AEA 205 (741)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~ 205 (741)
..|..|-..|....|...|.+.|++..+ .+..++....+.|++..+++.|..+.-..-+.. +.-...++.. --.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence 3666777777777788888888887765 345577778888888888888888743332221 1111112222 222
Q ss_pred hcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc-hHHH--HHHHHHhcCChhHHH
Q 004632 206 CGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTT-SWTA--MISCYNRSGWFQKAL 282 (741)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~--li~~~~~~~~~~~a~ 282 (741)
+-..++...+..-++...+..+ .|...|..+..+|.++|++..|.++|.+...-++. .|.. ..-..+..|++.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 3456677777766666666543 36778888999999999999999999776553333 2222 223356678888888
Q ss_pred HHHHHHHHC------CCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC------CCcchHHHHHHHHHHhcCChH
Q 004632 283 ESFVKMLEV------KEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMG------PEYDYLGPALIEFYAECGKMS 350 (741)
Q Consensus 283 ~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~ 350 (741)
+.+...... +..--..++......+...|-...+..+++.-++.-.. .++...|..+.
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as---------- 720 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS---------- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------
Confidence 888776542 11222233333333333334444444444333221100 01222221111
Q ss_pred HHHHHHHhcCCCCccc--HHHHHHH-HHHcCCc---h---HHHHHHHHHHHCCCCCCHHHHHHHHHH-------hhccC-
Q 004632 351 ECEKVIHAIGERNILS--WNMLISE-YARKGMS---K---EALELLVQMQTWGLMPDSFSVASSLSA-------CGNVG- 413 (741)
Q Consensus 351 ~A~~~~~~~~~~~~~~--~~~li~~-~~~~~~~---~---~a~~~~~~m~~~g~~p~~~~~~~ll~~-------~~~~~- 413 (741)
.|-.+|-.+. |+.+. +..++.. .-..+.. | -+.+.+-.-.. ...+..++..+... +...+
T Consensus 721 dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 721 DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcch
Confidence 1112222222 22111 1111111 1111111 1 00011110000 11112222222221 11122
Q ss_pred ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccC---CCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004632 414 SLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQ---KSVVMWNSMICGFYQNGNSLEAINLFHQM 490 (741)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 490 (741)
+...|...+...++........++.|.-. .-.|.+.-+...|-+-.. .+..+|..+...+.++.+++.|...|...
T Consensus 798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhh
Confidence 22356666666666666655566666555 444566666655544332 24455666666666777777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHH----HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC----
Q 004632 491 YLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLI----SYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---- 562 (741)
Q Consensus 491 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 562 (741)
+.. .+.+...|..........|+.-+...+|..-. ..|-.++...+.+........|+.++-+...+++..
T Consensus 877 qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 553 12234444444444444555555555555421 122233333333333334455555544444443331
Q ss_pred --------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHHHH
Q 004632 563 --------R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDS-GIKPNEVTFM----NILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 563 --------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
| +...|.+.....-+.+.+..|.+...+.+.- ...-+...|+ .+.+.++..|.++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 2 3445666665555666666666665554321 0112233333 233345556666655443322111
Q ss_pred cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 004632 629 FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM----PFPAN-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY 703 (741)
Q Consensus 629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 703 (741)
..+..+-..-+.. .-.++++++.+.|+++ ....+ ......++.....++..+.|...+-+...+.|.....
T Consensus 1036 ---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~s 1111 (1238)
T KOG1127|consen 1036 ---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASS 1111 (1238)
T ss_pred ---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhh
Confidence 0111111111111 2346777888888777 22222 2344555555667777778888777777777777777
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 704 YTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 704 ~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
...|.-++.-..+...-....+++.
T Consensus 1112 ll~L~A~~ild~da~~ssaileel~ 1136 (1238)
T KOG1127|consen 1112 LLPLPAVYILDADAHGSSAILEELE 1136 (1238)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 7777666665555554444444443
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=8.1e-08 Score=93.21 Aligned_cols=373 Identities=13% Similarity=0.065 Sum_probs=222.2
Q ss_pred HHHHHhcCChHHHHHHHHhcC---CCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCh
Q 004632 340 IEFYAECGKMSECEKVIHAIG---ERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDS-FSVASSLSACGNVGSL 415 (741)
Q Consensus 340 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~ 415 (741)
.......|+++.|...|-+.. ++|-+.|..-..+|...|++++|++=-.+-++ +.|+. ..|.....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 456678899999999998754 45777888899999999999999988777766 57775 4688888889999999
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHH------HhccC-C------CchHHHHHHHHHHhc-----
Q 004632 416 QLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLF------ERIQQ-K------SVVMWNSMICGFYQN----- 477 (741)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~-~------~~~~~~~l~~~~~~~----- 477 (741)
++|+.-|...++..+....+...+..++..... +...| ..+.. | ....|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999998888888888822111 11111 11110 0 011222222222110
Q ss_pred -----CChHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHhccccHHhH
Q 004632 478 -----GNSLEAINLFHQ-----MYLNC-------LEM------------D----------EVTFLTAIQACSNIGQLEKG 518 (741)
Q Consensus 478 -----g~~~~A~~~~~~-----m~~~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~a 518 (741)
.+...+...+.. +...+ ..| | ..-...+.++..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 001111111100 00000 111 0 01133455555666677777
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHH-------HHHHHHHHhcCCHHHHHHHH
Q 004632 519 KWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERN---VVSW-------SAMIDCYGMHGQLNDAASLF 588 (741)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-------~~l~~~~~~~~~~~~A~~~~ 588 (741)
.+-+....+.. .++.-++....+|...|.............+.. ..-| ..+..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 77777766654 355555666666777777666666555544311 1112 22333555667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCC
Q 004632 589 KQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPAN 666 (741)
Q Consensus 589 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~ 666 (741)
++.......|+..+ +....+++........-.+... ..-...-+..+.+.|++..|+..|.++ ..|.|
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 77665444443221 1122233333333222211111 111122255566777777777777776 34556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
...|.+...++.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++.++
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777777777777777777777777777777777777777777775544
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=4e-07 Score=81.31 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=106.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 004632 541 TDMYAKCGDLQTAQRVFDSMSE-----RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSG 614 (741)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~ 614 (741)
...+.+.|+++.|.+.+..|.. -|++|...+.-.- ..+++.+..+-+.-+.+ +.| ...||..++-.||+..
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhH
Confidence 3345678999999999999983 4677766554322 23455555555666666 455 3458999999999998
Q ss_pred CHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHh-cCChHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCC---HHHHH
Q 004632 615 SVEEGKFYFNAMRIFGV-EPDLQHYACMVDLLSR-SGDIEGAFKMIHSMPFPANGSIWGALLNG--CRIHKR---IDVMK 687 (741)
Q Consensus 615 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~---~~~a~ 687 (741)
-++.|-.++.+=-..-. -.+...|+ |++++.. .-..++|.+-++.+...-........+.. -...++ ...+.
T Consensus 325 yf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888887764322100 12334444 3444443 34667777666655110000111111111 111222 22334
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 688 TIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+-+++.+++. -.+....+++|++..|+..+.+.|..-.+
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 4445544443 22677889999999999999999987655
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=8e-09 Score=100.87 Aligned_cols=214 Identities=14% Similarity=0.063 Sum_probs=161.5
Q ss_pred hccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHH
Q 004632 510 SNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAAS 586 (741)
Q Consensus 510 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 586 (741)
.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+..+ .|......|.-.|...|.-..|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4566666776677766665533 556666666666667777777777777664 355677777778888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChHHH
Q 004632 587 LFKQMLDSGIKPNEVTFMNIL-----------WACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGA 654 (741)
Q Consensus 587 ~~~~~~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A 654 (741)
.+++-+.. .|... .+. ........+....++|-++.. .+..+|+.+...|+-.|.-.|++++|
T Consensus 375 ~L~~Wi~~--~p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHh--Cccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88887663 22111 010 112222334455566666555 55558889999999999999999999
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 655 FKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 655 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+..|+.+ ..|.|...|+.|+..+....+.++|+..|.+++++.|....+.+.|+-.|+..|.|++|.+.|=..+.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998 44557889999999999999999999999999999999999999999999999999999999877655
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=7.3e-07 Score=81.38 Aligned_cols=315 Identities=11% Similarity=0.029 Sum_probs=200.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH---HHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHh
Q 004632 369 MLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSL---SACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSK 445 (741)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (741)
-+...+...|++.+|+.-|....+. |+..|..+. ..|...|+-.-|..-+..+++..|+...+.-.-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 3455566667777777776666542 333333333 235566666666666666666666655555555556666
Q ss_pred cCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHH
Q 004632 446 CGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKL 525 (741)
Q Consensus 446 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (741)
.|.++.|..-|+.+.+.++.- +....++.+. ...+++ ......+..+...|+...|+.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl-------~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSKL-------ALIQEH---------WVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCc-chhHHHHHHH-------HhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 666766666666665443310 0000111110 001111 11222334455677888888888877
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 004632 526 ISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS---ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV- 601 (741)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~- 601 (741)
.+.. +-|...+..-..+|...|++..|+.-++... ..+..++--+-..+...|+.+.++...++.++ +.||..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 7753 3466777777888888888888877666544 45666666667777788888888888888888 778753
Q ss_pred ---HHHHH---------HHHHhccCCHHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 004632 602 ---TFMNI---------LWACSHSGSVEEGKFYFNAMRIFGVEPD---LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA 665 (741)
Q Consensus 602 ---~~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~ 665 (741)
.|..+ +......++|.++++-.+...+...... ...+..+-.++...|++-+|++...++ ...|
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 12211 1134556788888888888877443312 334556667777888999999988887 5555
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632 666 N-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL 707 (741)
Q Consensus 666 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 707 (741)
+ ..++..-..++.-...++.|+.-|+++.+.+|+|..+-.-+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 4 77888888888888899999999999999999887664444
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=1.6e-08 Score=95.95 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHHhccCCCc----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhH
Q 004632 443 YSKCGFKNLAYLLFERIQQKSV----VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKG 518 (741)
Q Consensus 443 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 518 (741)
+.-.|.+..++.-.+ ....+. ....-+.+++...|+++.++.- +... ..|.......+...+...++.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---IKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---hccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 334566666664444 221111 2233345556666665543322 2222 244444444444444333333333
Q ss_pred HHHHHHHHHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004632 519 KWVHHKLISYGVR-KDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK 597 (741)
Q Consensus 519 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 597 (741)
..-++........ .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3333322211111 11111222223334455555555555443 3334444445555555555555555555554 23
Q ss_pred CCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHH
Q 004632 598 PNEVTFMNILWACS----HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWG 671 (741)
Q Consensus 598 p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ 671 (741)
.|.. ...+..++. ..+.+.+|..+|+++.+ .+.+++.+.+.++.+....|++++|.+.+++. ..+.++.++.
T Consensus 162 eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 162 EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 3322 222222221 11234555555555433 22344444555555555555555555555444 2233444444
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHhccCCCC
Q 004632 672 ALLNGCRIHKRI-DVMKTIEKELSVTGTND 700 (741)
Q Consensus 672 ~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~ 700 (741)
+++.+....|+. +.+.+.+.++....|+.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 444444444444 44444555554455543
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=3.4e-06 Score=77.14 Aligned_cols=304 Identities=13% Similarity=0.098 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHH---HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH-HHHh
Q 004632 334 YLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLI---SEYARKGMSKEALELLVQMQTWGLMPDSFSVASS-LSAC 409 (741)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~ 409 (741)
.-...+...+...|++.+|..-|....+.|+..|.++. ..|...|+...|+.-+.+..+ .+||...-..- ...+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 33344566677778888888888888877777776664 467888888888888888876 57776543322 2236
Q ss_pred hccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004632 410 GNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQ 489 (741)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 489 (741)
.+.|.++.|..-|+.+++..+...... ..+.+.-..++-.. .-..+..+...|+...|+..+..
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~----eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVL----EAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhH----HHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHH
Confidence 788999999999999988887543311 11111111111111 11223344456666777777666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHH-
Q 004632 490 MYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVV- 566 (741)
Q Consensus 490 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~- 566 (741)
+++- .+-|...+..-..+|...|.+..|+.=++...+.... +...+.-+-..+...|+.+.++..+++..+ ||..
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 6653 2345555566666666777777766666555544322 344444555666677777777777766654 3321
Q ss_pred ---HHHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H---HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632 567 ---SWSAM---------IDCYGMHGQLNDAASLFKQMLDSGIKPNE--V---TFMNILWACSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 567 ---~~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 629 (741)
.|..+ +......++|.++++..+...+. .|.. . .+..+-.++...+++.+|++...+++.
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 12111 12345677888899988888884 5542 2 344555677888999999999999987
Q ss_pred CCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 630 GVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 630 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
+.|+ +.++-.-..+|.-...+++|+.-|+.+
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455 788888888999999999999999998
No 99
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.4e-06 Score=89.12 Aligned_cols=125 Identities=16% Similarity=0.102 Sum_probs=70.0
Q ss_pred HHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcC
Q 004632 503 LTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHG 579 (741)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 579 (741)
..+...+...|++++|.++.+..+++.+. .+..|..-...+-..|++.+|.+.++...+ .|...-+..+..+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 34445555666666666666666665322 245555566666666666666666666554 23344444555666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHhccCCHHHHHHHHHHHHH
Q 004632 580 QLNDAASLFKQMLDSGIKPNEV------TF--MNILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 580 ~~~~A~~~~~~~~~~~~~p~~~------~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
++++|.+++......+..|-.. .| .....+|.+.|++..|++.|..+.+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666665554433211 11 2223356666666666665555544
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=1.6e-06 Score=87.63 Aligned_cols=292 Identities=11% Similarity=0.005 Sum_probs=167.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CCchH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004632 435 VQSSLIDMYSKCGFKNLAYLLFERIQQ---KSVVM---WNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQA 508 (741)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 508 (741)
.+..+...+...|+.+.+...+....+ .+... .......+...|++++|...+++..... +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 444455555555555554444433321 11111 1122334556788888888888877652 223333331 112
Q ss_pred Hh----ccccHHhHHHHHHHHHHcCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCC
Q 004632 509 CS----NIGQLEKGKWVHHKLISYGVRKD-IYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQ 580 (741)
Q Consensus 509 ~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 580 (741)
+. ..+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+ .+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 22 23444444444433 1111222 23334555677888999999998888774 345677788888889999
Q ss_pred HHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCccHH-H--HHHHHHHhcCChHH
Q 004632 581 LNDAASLFKQMLDSGI-KPNE--VTFMNILWACSHSGSVEEGKFYFNAMRIFGV-EPDLQHY-A--CMVDLLSRSGDIEG 653 (741)
Q Consensus 581 ~~~A~~~~~~~~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~ 653 (741)
+++|...+++..+... .|+. ..|..+...+...|++++|..+++++..... .+..... + .+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999998887321 1222 2345677788889999999999998865322 1111111 1 22333334443333
Q ss_pred HHHH--H-HhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---------CchhHHHHHHHHhhcCCh
Q 004632 654 AFKM--I-HSM-PF-PA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN---------DNGYYTLLSNIYAEEGNW 717 (741)
Q Consensus 654 A~~~--~-~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~ 717 (741)
+.+. + ... +. +. ..........++...|+.++|...++.+....-. ........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3222 1 111 11 11 1122235666678899999999999887653211 334566778889999999
Q ss_pred HHHHHHHHHHHhC
Q 004632 718 DEFGKVRSIMEVT 730 (741)
Q Consensus 718 ~~A~~~~~~~~~~ 730 (741)
++|.+.+......
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887663
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=5.5e-07 Score=80.48 Aligned_cols=351 Identities=12% Similarity=0.073 Sum_probs=217.6
Q ss_pred hCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 004632 23 TGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE--P-DSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYP 99 (741)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 99 (741)
+|+.--..-+.+.+.-+.+..++.+|.+++....+ | +....+.+..+|....++..|-..++++-... |...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHH
Confidence 34444444566778888899999999999987654 4 55667888889999999999999999987653 3333332
Q ss_pred H-HHHHhhcCCChhhHHHHHHHHHHhCCCCChh--hhhHHHHHhHhcCChhHHHHHHccCCC-CCceeHHHHHHHHHhCC
Q 004632 100 S-VLRACSSLGDLGSGEKVHGRIIKCGFDKDDV--IQTSILCTYGEFGCLDDARKVFDKMTS-RDVVSWSSIIASYFDNA 175 (741)
Q Consensus 100 ~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g 175 (741)
. -...+-+.+.+..|.++...|... +... ....-....-..+|+..+..++++.+. .+..+.+-......+.|
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc
Confidence 2 245666778999999999888543 2111 111111223457899999999999984 66667777777778999
Q ss_pred ChhHHHHHHHHhHHC-CCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHH----HHHHHHHHhcCCHHHH
Q 004632 176 DVSEGLKMFHSMVRE-GVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLG----NSFIVMYSKCGDLLSA 250 (741)
Q Consensus 176 ~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A 250 (741)
+++.|++-|+...+- |..| ...|+..+.. .+.|+.+.|.+..++++++|++..+..- ...++.-.-.+-..-+
T Consensus 159 qyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 999999999998775 5555 4567666644 4678999999999999999875332211 0001000000000000
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCC
Q 004632 251 ERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEV-KEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMG 329 (741)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 329 (741)
+.- -+..+|.-...+.+.|+++.|.+.+..|... ....|+.|.+.+.-.-. .++......-+.-+... .
T Consensus 237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--n 306 (459)
T KOG4340|consen 237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--N 306 (459)
T ss_pred HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--C
Confidence 000 0112444445566778888888888777543 23456667665533222 23333333333334433 3
Q ss_pred CCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCC-----cccHHHHHHHHH-HcCCchHHHHHHHHHH
Q 004632 330 PEYDYLGPALIEFYAECGKMSECEKVIHAIGERN-----ILSWNMLISEYA-RKGMSKEALELLVQMQ 391 (741)
Q Consensus 330 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~-~~~~~~~a~~~~~~m~ 391 (741)
|-...++..++-.|+++.-++.|.+++.+-..-+ ...|+. ++++. ..-.++++.+-++.+.
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 5566777788888888888888888877654322 222332 33332 2345566665555443
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=7.7e-08 Score=91.32 Aligned_cols=245 Identities=11% Similarity=0.042 Sum_probs=155.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 004632 472 CGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQ 551 (741)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (741)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.+. ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34455788888886655 222222223344556667777777766433 333332 2566666655555554445666
Q ss_pred HHHHHHHhcC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 004632 552 TAQRVFDSMS-ER----NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAM 626 (741)
Q Consensus 552 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 626 (741)
.+..-+++.. ++ +..........+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665544 22 2222222334556678888888887642 34566667777888899999999999888
Q ss_pred HHcCCCCCccHHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004632 627 RIFGVEPDLQHYACMVDLLS----RSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTND 700 (741)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 700 (741)
.+.+ .| .+...++.++. -.+++.+|..+|+++ .+++++.+++.++.+....|++++|.+.++++.+.+|++
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 7632 33 33333444333 234688999999888 456778888888888888999999999999999999998
Q ss_pred chhHHHHHHHHhhcCCh-HHHHHHHHHHHhC
Q 004632 701 NGYYTLLSNIYAEEGNW-DEFGKVRSIMEVT 730 (741)
Q Consensus 701 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 730 (741)
+.++..++-+....|+. +.+.++++++++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 88888888888888888 5667788777663
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1.8e-07 Score=87.99 Aligned_cols=180 Identities=9% Similarity=-0.021 Sum_probs=113.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----H
Q 004632 533 DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN-V---VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV----T 602 (741)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~ 602 (741)
....+..+...+.+.|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 344555566666777777777777776653 32 1 3455666677777777777777777776 344322 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 004632 603 FMNILWACSHS--------GSVEEGKFYFNAMRIFGVEPDL-QHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGAL 673 (741)
Q Consensus 603 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l 673 (741)
+..+..++... |++++|.+.++.+.+.. |+. ..+..+... +...... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 34444444433 56667777777776532 222 122111111 0000000 0112245
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 674 LNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
...+.+.|++++|...++++++..|+++ ..+..++.+|.+.|++++|..+++.+..+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6678899999999999999999987654 689999999999999999999999887654
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=2.3e-07 Score=83.13 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 004632 613 SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGC-RIHKR--IDVMK 687 (741)
Q Consensus 613 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~-~~~g~--~~~a~ 687 (741)
.++.+++...++...+.+ +.+...|..++..|...|++++|...+++. . .+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445555665566555533 334566666666666666666666666666 2 334555666666553 45555 46677
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 688 TIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
++++++++.+|+++.++..|+..+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777777767777777777777777777777766653
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=6.2e-08 Score=81.93 Aligned_cols=123 Identities=8% Similarity=0.011 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 004632 585 ASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--P 662 (741)
Q Consensus 585 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~ 662 (741)
..++++..+ +.|+. +..+...+...|++++|...|+.+.... +.+...+..++.++.+.|++++|...++++ .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666666 56654 4445667778888888888888887743 335777788888888888888888888888 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632 663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA 712 (741)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 712 (741)
.|.+...+..++.++...|++++|...++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55677788888888888888888888888888888888888877776654
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=4.8e-07 Score=88.82 Aligned_cols=246 Identities=13% Similarity=0.100 Sum_probs=168.7
Q ss_pred hhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCC---CchHHHHHHHHHHhcCChHHHHH
Q 004632 409 CGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQK---SVVMWNSMICGFYQNGNSLEAIN 485 (741)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 485 (741)
+.+.|++.+|.-.|+..++.+|.+..+|..|.......++-..|+..+.+..+- |....-.|.-+|...|.-..|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 445677777777788888887777778888888888887777777777776654 33455566667777788888888
Q ss_pred HHHHHHHCCCCC--------CHHHHHHHHHHHhccccHHhHHHHHHHH-HHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 004632 486 LFHQMYLNCLEM--------DEVTFLTAIQACSNIGQLEKGKWVHHKL-ISYGVRKDIYIDTALTDMYAKCGDLQTAQRV 556 (741)
Q Consensus 486 ~~~~m~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (741)
.++..+....+- +...-.. ..+..........++|-.+ ...+..+|+.+...|.-.|.-.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 888776543110 0000000 1122222334444555444 5555557888888888889999999999999
Q ss_pred HHhcCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 004632 557 FDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVE 632 (741)
Q Consensus 557 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 632 (741)
|+.+.. | |...||.|...++...+.++|+..|.++++ +.|+.+ ....|.-+|...|.+++|.+.|-.++...-.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 998873 4 678899999999999999999999999999 889865 6666777899999999999988877662111
Q ss_pred ---------CCccHHHHHHHHHHhcCChHHHHHHH
Q 004632 633 ---------PDLQHYACMVDLLSRSGDIEGAFKMI 658 (741)
Q Consensus 633 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (741)
++..+|..|=.++.-.++.|-+.+..
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 11235555555555555555444443
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=7.6e-06 Score=82.73 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=11.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHH
Q 004632 607 LWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 607 l~~~~~~~~~~~a~~~~~~~~~ 628 (741)
..++...|+.++|...++.+..
T Consensus 271 a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 271 ALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHhcCCCHHHHHHHHHHHHH
Confidence 3344555555555555555544
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=4.6e-05 Score=87.78 Aligned_cols=364 Identities=11% Similarity=-0.031 Sum_probs=175.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCccc--HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 004632 335 LGPALIEFYAECGKMSECEKVIHAIGERNILS--WNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNV 412 (741)
Q Consensus 335 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 412 (741)
........+...|++.+|..........+... ...........|+++.+..+++.+.......+..........+...
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 33445566777788887777666665432211 1222334455677777666666542211111222222233334566
Q ss_pred CChHHHHHHHHHHHHhcCCc----c---h--hHHHHHHHHHhcCCHHHHHHHHHhccC--C--Cc----hHHHHHHHHHH
Q 004632 413 GSLQLGLQIHGHVIKIDCKD----E---F--VQSSLIDMYSKCGFKNLAYLLFERIQQ--K--SV----VMWNSMICGFY 475 (741)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~----~---~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~ 475 (741)
|+++++...+..+...-... . . ....+...+...|++++|...+++... + +. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 78888888777665432110 1 1 223344555667777777777765432 1 11 12344445556
Q ss_pred hcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccccHHhHHHHHHHHHH----cCCCC---CchhHHHHHHH
Q 004632 476 QNGNSLEAINLFHQMYLNCL---EM--DEVTFLTAIQACSNIGQLEKGKWVHHKLIS----YGVRK---DIYIDTALTDM 543 (741)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~ 543 (741)
..|++++|...+++.....- .+ ...++..+...+...|+++.|...+++..+ .+... ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 67777777777776653211 11 112333444555667777777766665533 12110 11122233444
Q ss_pred HHhcCCHHHHHHHHHhcCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHH
Q 004632 544 YAKCGDLQTAQRVFDSMSE------R--NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK-PNEVTF-----MNILWA 609 (741)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~-----~~ll~~ 609 (741)
+...|++++|...+.+... + ....+..+...+...|++++|...++++....-. .....+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 4555666666666655431 1 1122333444555566666666666655431000 000000 001122
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCcc----HHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHH
Q 004632 610 CSHSGSVEEGKFYFNAMRIFGVEPDLQ----HYACMVDLLSRSGDIEGAFKMIHSM-------PFPA-NGSIWGALLNGC 677 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~ 677 (741)
+...|+.+.|.+.+........ .... .+..+..++...|++++|...+++. +... ...+...+..++
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3335566666666554432110 0111 1234455555666666666665554 1111 112334444455
Q ss_pred HhcCCHHHHHHHHHHHhccCCC
Q 004632 678 RIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 678 ~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
...|+.++|...+.+++++...
T Consensus 742 ~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHhCc
Confidence 5666666666666666665544
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=1.8e-06 Score=87.24 Aligned_cols=210 Identities=15% Similarity=0.169 Sum_probs=177.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc
Q 004632 435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQ 514 (741)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 514 (741)
....+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+-.+ -+|++..|..+.+......-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 6778899999999999999999985 5788899999999999999999888777 48999999999999888888
Q ss_pred HHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004632 515 LEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQM 591 (741)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 591 (741)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ -...+|-.+..+..+.++++.|.+.|...
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 99999888765332 112222334457899999999987664 24568888888899999999999999999
Q ss_pred HHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 592 LDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 592 ~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
.. +.||.. .|+.+-.+|.+.|+..+|...++++.+.+ .-+...+...+-...+.|.+++|++.+.++
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 98 889765 89999999999999999999999999966 445667777777888999999999999988
No 110
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=3.8e-06 Score=80.96 Aligned_cols=183 Identities=17% Similarity=0.157 Sum_probs=121.9
Q ss_pred HHhcC-CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCH
Q 004632 544 YAKCG-DLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQ--LNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSV 616 (741)
Q Consensus 544 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~ 616 (741)
+...| ++++++..++++.+ .+..+|+.....+.+.|+ .++++.+++++.+ ..| |..+|.....++...|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhH
Confidence 33334 45666666665552 233445544444444454 2567778888887 556 445777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc---CCh----HHHHHHHHhC--CCCCCHHHHHHHHHHHHhc----CCH
Q 004632 617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS---GDI----EGAFKMIHSM--PFPANGSIWGALLNGCRIH----KRI 683 (741)
Q Consensus 617 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~----g~~ 683 (741)
+++++.++++++.++ -+...|+....++.+. |.. ++++++..++ ..|.+...|+-+...+... ++.
T Consensus 159 ~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 159 EDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 888888888887553 3455666655555443 222 4567776555 3556777888777777663 445
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcC------------------ChHHHHHHHHHHHh
Q 004632 684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG------------------NWDEFGKVRSIMEV 729 (741)
Q Consensus 684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~ 729 (741)
.+|.+...++...+|+++.++..|+.+|.... ..++|.++++.|.+
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 67888888988889999999999999998642 34678888888843
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=0.0009 Score=77.22 Aligned_cols=368 Identities=9% Similarity=-0.057 Sum_probs=183.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCC
Q 004632 235 NSFIVMYSKCGDLLSAERTFVKIEKRCTT--SWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGW 312 (741)
Q Consensus 235 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 312 (741)
......+...|++.+|............. ............|++..+.+.++.+.......+..........+...|+
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 33444566677777776666555443221 1112223344556666666665554221111111122222333345566
Q ss_pred hhhHHHHHHHHHHhCCCCC---cchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHH
Q 004632 313 LREGKSVHCQIIRKGMGPE---YDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQ 389 (741)
Q Consensus 313 ~~~a~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (741)
.+++...+....+.--..+ +..... .....+...+...|++++|...+++
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~---------------------------~~~~~~a~~~~~~g~~~~A~~~~~~ 477 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQA---------------------------EFNALRAQVAINDGDPEEAERLAEL 477 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHH---------------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6666666665543211000 000000 0001112223345555555555555
Q ss_pred HHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHHHhcC----Ccch--hHHHHHHHHHhcCCHHHHHHHHHhc
Q 004632 390 MQTWGLMPDS----FSVASSLSACGNVGSLQLGLQIHGHVIKIDC----KDEF--VQSSLIDMYSKCGFKNLAYLLFERI 459 (741)
Q Consensus 390 m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 459 (741)
....-...+. .....+...+...|+++.|...+..+..... .... ....+...+...|+++.|...+++.
T Consensus 478 al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 478 ALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4432101111 1112222234445566655555555443211 1111 3344555566666666666665543
Q ss_pred cC-------CC----chHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccccHHhHHHHHHH
Q 004632 460 QQ-------KS----VVMWNSMICGFYQNGNSLEAINLFHQMYLN--CLEMD--EVTFLTAIQACSNIGQLEKGKWVHHK 524 (741)
Q Consensus 460 ~~-------~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (741)
.. ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+.......|+.+.|...+..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 01 112333444556668888887777765432 11121 23333445566678888888887777
Q ss_pred HHHcCCCCC-chhH-----HHHHHHHHhcCCHHHHHHHHHhcCCCC---H----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004632 525 LISYGVRKD-IYID-----TALTDMYAKCGDLQTAQRVFDSMSERN---V----VSWSAMIDCYGMHGQLNDAASLFKQM 591 (741)
Q Consensus 525 ~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~l~~~~~~~~~~~~A~~~~~~~ 591 (741)
+........ ...+ ...+..+...|+.+.|...+.....+. . ..+..+..++...|++++|...+++.
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 644211111 0101 112234455788888888887766422 1 11345667788889999999998887
Q ss_pred HHc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632 592 LDS----GIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 592 ~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 629 (741)
... |..++. .+...+..++...|+.++|...+.++.+.
T Consensus 718 l~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 718 NENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 753 222222 24555666788999999999999998874
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=1.3e-07 Score=79.88 Aligned_cols=108 Identities=8% Similarity=-0.104 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 004632 620 KFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG 697 (741)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 697 (741)
..++++.++. .|+ .+..++..+...|++++|...++.. ..|.+...+..++.++...|++++|...|+++.+++
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456666552 343 3556788899999999999999998 456688899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 698 TNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 698 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
|+++.++..++.++...|++++|...|++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987744
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.2e-08 Score=60.54 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=31.2
Q ss_pred hCCCCChhhhHHHHHHHHccCChhhHHHhhccCC
Q 004632 23 TGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFK 56 (741)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 56 (741)
.|+.||..|||.||+.|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999885
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=2.2e-06 Score=91.23 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 004632 599 NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLN 675 (741)
Q Consensus 599 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~ 675 (741)
+...+..|.....+.|++++|..+++.+.+. .|+ ......++.++.+.+++++|...+++. ..|.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 3445555555666666666666666666552 333 334445555666666666666666665 23344555555556
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 676 GCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 676 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666544
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=2.3e-06 Score=92.38 Aligned_cols=197 Identities=9% Similarity=0.071 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004632 534 IYIDTALTDMYAKCGDLQTAQRVFDSMSE--------RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMN 605 (741)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 605 (741)
...|-..|......++.++|+++++++.. .-...|.+++.....-|.-+...++|+++.+ ..-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHHH
Confidence 34445555555666666666666666552 1233566666655556666666677777666 2222345666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcC
Q 004632 606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA---NGSIWGALLNGCRIHK 681 (741)
Q Consensus 606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g 681 (741)
|...|.+.+.+++|.++++.|.+. +......|..+++.+.+..+-+.|..+++++ ..-| ........+....+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666677777777777777777662 2234556666667777766666777776666 2222 3444455555566777
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632 682 RIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK 733 (741)
Q Consensus 682 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 733 (741)
|.+++..+|+..+...|.....|..+++.=.+.|+.+.+..+|+++...++.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 7777777777777777776667777777777777777777777776665544
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=6.9e-06 Score=72.13 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=54.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004632 612 HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTI 689 (741)
Q Consensus 612 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (741)
..|++++|+++++.+++.+ +.|..++..-+.+.-..|+.-+|++-+.+. .+..|...|..+...|...|+++.|.-+
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 3445555555555554432 223333333333333444444444444444 3444555555555555555555555555
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcC---ChHHHHHHHHHHHh
Q 004632 690 EKELSVTGTNDNGYYTLLSNIYAEEG---NWDEFGKVRSIMEV 729 (741)
Q Consensus 690 ~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 729 (741)
+++++=.+|.++..+..|+.+++..| +.+-|.++|.+..+
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544443 23334444444443
No 117
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=2.6e-06 Score=82.05 Aligned_cols=186 Identities=11% Similarity=0.122 Sum_probs=141.6
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCH--
Q 004632 544 YAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHG-QLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSV-- 616 (741)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~-- 616 (741)
+...++.++|+...+++.+ | +..+|+....++...| ++++++..++++.+ ..|+. .+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCchhh
Confidence 4455677788888887774 3 3445665556666667 68999999999998 45654 4677665556666653
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 004632 617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIH---KR----IDVMK 687 (741)
Q Consensus 617 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~---g~----~~~a~ 687 (741)
+++..+++++.+.. +-+...|.....++.+.|+++++++.++++ ..+.+..+|+.....+.+. |. .++..
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 67899999998854 346778888888899999999999999998 4566788888887776554 22 35788
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhh----cCChHHHHHHHHHHHhCCC
Q 004632 688 TIEKELSVTGTNDNGYYTLLSNIYAE----EGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 688 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 732 (741)
...++++..+|+|..+|..+..++.. .++..+|.++..+..+.++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 88899999999999999999999988 4566779888888766443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=4.4e-06 Score=74.87 Aligned_cols=155 Identities=8% Similarity=0.061 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHH
Q 004632 541 TDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEG 619 (741)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 619 (741)
+..|...|+++.+....+.+..|.. .+...++.+++...+++..+ ..| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3457778887776555444332210 11235677888888888888 456 455888888899999999999
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHH-HhcCC--hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632 620 KFYFNAMRIFGVEPDLQHYACMVDLL-SRSGD--IEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELS 694 (741)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 694 (741)
...|+++.+.. +-+...+..++.++ ...|+ .++|.+++++. ..+.+..++..++..+.+.|++++|...+++++
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998854 23577788888864 67777 59999999998 455578888999999999999999999999999
Q ss_pred ccCCCCchhHHH
Q 004632 695 VTGTNDNGYYTL 706 (741)
Q Consensus 695 ~~~p~~~~~~~~ 706 (741)
+..|.+..-+..
T Consensus 172 ~l~~~~~~r~~~ 183 (198)
T PRK10370 172 DLNSPRVNRTQL 183 (198)
T ss_pred hhCCCCccHHHH
Confidence 999887654433
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=3.9e-06 Score=74.47 Aligned_cols=155 Identities=11% Similarity=0.108 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632 569 SAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR 647 (741)
Q Consensus 569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (741)
..+-..+...|+-+....+...... ..| |......++....+.|++..|+..++++.... ++|...|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 5566777788888888888777655 334 34455567778888999999999999988743 6678899999999999
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632 648 SGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 648 ~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
.|++++|..-+.+. . .+.++...+++...+.-.||.+.|..++..+....+.++.+-..|+.+....|+..+|.++-.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999998888877 3 445677888888888899999999999999888888888888899888889999999887755
Q ss_pred H
Q 004632 726 I 726 (741)
Q Consensus 726 ~ 726 (741)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=3.3e-06 Score=85.39 Aligned_cols=211 Identities=11% Similarity=0.005 Sum_probs=129.5
Q ss_pred HHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcC
Q 004632 502 FLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHG 579 (741)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 579 (741)
-..+...+...|-...|..+++++. .+...+.+|...|+..+|..+..+..+ |+...|..+........
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 3344455556666666666666553 233455666667777777666655443 55556665555544444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHH
Q 004632 580 QLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIH 659 (741)
Q Consensus 580 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (741)
-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.++-+..+.+++..|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 455555555443221 11122222234567777777777666632 2345566666666677777777777777
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 660 SM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 660 ~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+. ..|.+...|+++..++.+.|+..+|...++++++-+-++..+|....-+..+.|.+++|.+.+.++.+
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66 33445667777777777777777777777777777766777777777677777777777777777666
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.57 E-value=0.001 Score=65.46 Aligned_cols=127 Identities=9% Similarity=0.063 Sum_probs=63.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCR 678 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 678 (741)
+|..++..-.+..-.+.|..+|.++.+.+..+ ++..+.+++.-|+. ++.+-|.++|+-- .++.++......+..+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34444444444455555555555555533333 44445555554432 4555555555544 34444444455555555
Q ss_pred hcCCHHHHHHHHHHHhcc--CCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 679 IHKRIDVMKTIEKELSVT--GTN-DNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 679 ~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
..++-..+..+|++++.. .|+ ...+|.....-=..-|+.+.++++-+++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 555555555555555544 221 224455555444455555555555544433
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=4e-06 Score=78.84 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCC--CchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-H---HH
Q 004632 496 EMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRK--DIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RN-V---VS 567 (741)
Q Consensus 496 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~ 567 (741)
......+......+...|+++.|...++.+.+..+.. ....+..+..++.+.|++++|...++++.+ |+ . .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3456677788888999999999999999998765331 124567788899999999999999999874 32 2 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH
Q 004632 568 WSAMIDCYGMH--------GQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY 638 (741)
Q Consensus 568 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 638 (741)
+..+..++... |++++|.+.++++.+ ..|+.. .+..+.... . ... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~-~---~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD-Y---LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH-H---HHH------HHH--------HHH
Confidence 55556666654 789999999999998 567654 222221110 0 000 000 011
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 639 ACMVDLLSRSGDIEGAFKMIHSM----P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
..+...+.+.|++++|+..+++. + .+.....+..++.++.+.|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 24667788999999999999887 2 2234568888999999999999999998888776663
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.54 E-value=1.1e-06 Score=74.24 Aligned_cols=99 Identities=6% Similarity=-0.037 Sum_probs=50.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 004632 603 FMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIH 680 (741)
Q Consensus 603 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 680 (741)
...+...+...|++++|.+.++.+...+ +.+...+..++.++.+.|++++|...+++. ..+.+...+..+...+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344445555555555555555555432 223444555555555555555555555544 2233444555555555555
Q ss_pred CCHHHHHHHHHHHhccCCCCch
Q 004632 681 KRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
|++++|...++++.+.+|++..
T Consensus 99 g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 99 GEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCHHHHHHHHHHHHHhccccch
Confidence 5555555555555555555443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=2e-05 Score=84.13 Aligned_cols=135 Identities=7% Similarity=0.031 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHH
Q 004632 564 NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMV 642 (741)
Q Consensus 564 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 642 (741)
++..+..|.....+.|.+++|+.+++...+ +.|+.. ....+...+.+.+++++|+..+++..... +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 466677777777778888888888888877 677654 55666667777888888888888777643 22455666777
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 643 DLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
.++.+.|++++|..+|+++ +.+.+...+..+..++-+.|+.++|...|+++.+...+-.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 7777888888888888777 3444567777777777788888888888888777654433
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1.9e-05 Score=70.28 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=126.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 004632 538 TALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHS 613 (741)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 613 (741)
..+-..+...|+-+....+...... .|.......+....+.|++..|+..+.+... +.| |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 5556667778888888888777552 4556677789999999999999999999998 555 566888888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004632 614 GSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEK 691 (741)
Q Consensus 614 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (741)
|+++.|..-|.+..+.. +-++..++.++-.|.-.|+.+.|..++.+. ..+.+..+..++..+....|++++|+.+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999999842 235677888999999999999999999988 333478888999999999999999999876
Q ss_pred H
Q 004632 692 E 692 (741)
Q Consensus 692 ~ 692 (741)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 5
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.7e-05 Score=70.28 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=52.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 004632 611 SHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR----SGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRID 684 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 684 (741)
.+..+++-|.+.+++|.+.. +..+.+.|..++.+ .+++.+|.-+|+++ +.+|++.+.+..+.++...|+++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 34445555555555554411 23333333333322 23455555555555 34555555555555555555555
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 004632 685 VMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD 718 (741)
Q Consensus 685 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 718 (741)
+|..+++.++..+++++.++..++-+-...|+..
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 5555555555555555555555554444445443
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=3.8e-05 Score=83.45 Aligned_cols=224 Identities=15% Similarity=0.091 Sum_probs=167.6
Q ss_pred hhhHHHHHHHhhccCChhhHHHHHHHHHHhC-CC--CCcchHHHHHHHHHHhcCChHHHHHHHHhcCCC--CcccHHHHH
Q 004632 297 LITLITVLGSCAGLGWLREGKSVHCQIIRKG-MG--PEYDYLGPALIEFYAECGKMSECEKVIHAIGER--NILSWNMLI 371 (741)
Q Consensus 297 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li 371 (741)
...|...+......++.+.|+++.++.++.- +. ..-..+|.+++++-...|.-+...++|++..+- ....|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3466777777778888888888888877642 11 123467777888878888888888888887652 245688888
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcch--hHHHHHHHHHhcCCH
Q 004632 372 SEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEF--VQSSLIDMYSKCGFK 449 (741)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 449 (741)
..|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++++.-|.... +..-.+.+-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999876 4566778888888888999999999999999888887443 777788888889999
Q ss_pred HHHHHHHHhccCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHhHHHH
Q 004632 450 NLAYLLFERIQQKS---VVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDE--VTFLTAIQACSNIGQLEKGKWV 521 (741)
Q Consensus 450 ~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~ 521 (741)
+.++.+|+...... ...|+..++.=.++|+.+.+..+|++....++.|-. ..|...+..--..|+-..++.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99999998876543 468999999999999999999999999888776653 2344444433344444443333
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=6.4e-05 Score=73.03 Aligned_cols=174 Identities=13% Similarity=0.024 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 004632 548 GDLQTAQRVFDSMSE------RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGK 620 (741)
Q Consensus 548 g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 620 (741)
.+..++....+.+.. |+...+...+.+......-..+...+.+-.+ | -........-.+...|++++|+
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~aa~YG~A~~~~~~~~~d~A~ 326 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK----RGGLAAQYGRALQTYLAGQYDEAL 326 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC----ccchHHHHHHHHHHHHhcccchHH
Confidence 345556656666652 4445555555543332222222222222221 2 1222222333445667888888
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632 621 FYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 698 (741)
..++.+++. .+-|+.......+.+.+.++.++|.+.++++ ...| ....+..+..++.+.|+..+|+..++.....+|
T Consensus 327 ~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 327 KLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 888887763 2345666667778888888888888888887 3334 366677778888888888888888888888888
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632 699 NDNGYYTLLSNIYAEEGNWDEFGKVRSI 726 (741)
Q Consensus 699 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 726 (741)
+++..|..|+.+|...|+..+|..-+-+
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 8888888888887777766666554444
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=2.3e-05 Score=84.34 Aligned_cols=245 Identities=10% Similarity=0.127 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHH
Q 004632 463 SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFL-TAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALT 541 (741)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 541 (741)
+...+..|+..|...+++++|.++.+...+. .|+...+- .....+...++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5578888999999999999999999976664 45443322 222245555554444333 223
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHH
Q 004632 542 DMYAKCGDLQTAQRVFDSMSE--RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEE 618 (741)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 618 (741)
+......++.....+...+.. .+...+..+..+|-+.|+.++|..+|+++++ +.|+ ....+.+...|... +.++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHH
Confidence 333334444333444444442 2445778888999999999999999999999 5574 55888888888888 9999
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHH---HHH--hcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004632 619 GKFYFNAMRIFGVEPDLQHYACMVD---LLS--RSGDIEGAFKMIHSM----PFPANGSIWGALLNGCRIHKRIDVMKTI 689 (741)
Q Consensus 619 a~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~~~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (741)
|.+++.++...-+ +..-|+.+.. -++ ...+++.-..+.+++ ++..-..++.-+...|.+.++++++..+
T Consensus 168 A~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 168 AITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999988876311 1111111111 111 122333333333333 2333444555566677888899999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-CCCcc
Q 004632 690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV-TGLKK 734 (741)
Q Consensus 690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 734 (741)
++.+++.+|.|..+...++.+|. +.|.+ ...+++.++ .|+..
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGN 288 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcccc
Confidence 99999999999999999998887 44444 444444333 44443
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=7.3e-06 Score=80.53 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=105.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRI 679 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~ 679 (741)
....|+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|++++++. ..|.+...+......+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 44556667777889999999999998753 44 4556888888888999999999888 455677788888888999
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 680 HKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 680 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
.++++.|+.+.+++.+..|.+-..|..|+.+|.+.|++++|+-.++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988764
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=2.9e-06 Score=70.04 Aligned_cols=94 Identities=11% Similarity=-0.061 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 004632 637 HYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE 714 (741)
Q Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 714 (741)
..-.+...+...|++++|.++|+-. -.+-+...|..|+.++...|++++|+..|.++..++|+++..+..++.+|...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3444666677899999999999988 34567889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 004632 715 GNWDEFGKVRSIMEVT 730 (741)
Q Consensus 715 g~~~~A~~~~~~~~~~ 730 (741)
|+.++|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988774
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=5.6e-06 Score=69.92 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=88.8
Q ss_pred HHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632 622 YFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 622 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 698 (741)
.++++... .| +......++..+...|++++|.+.++.+ ..+.+...+..++..+...|++++|...++++.+.+|
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555543 33 3455667788888999999999999887 3456788888899999999999999999999999999
Q ss_pred CCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 699 NDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 699 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
+++..+..++.+|...|++++|...+++..+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999887744
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=7.9e-05 Score=66.26 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=77.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHH
Q 004632 543 MYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSH----SGSVEE 618 (741)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~ 618 (741)
.|...|++++|.+....... ....-.=+..+.+..+.+.|.+.+++|.+ +. +..|.+.|..++.+ .+...+
T Consensus 117 i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred HhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhh
Confidence 34555555555555554221 11222222233444555666666666655 22 34445544444432 234555
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhc
Q 004632 619 GKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK-RIDVMKTIEKELSV 695 (741)
Q Consensus 619 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 695 (741)
|.-+|++|-+. .+|++.+.+-...++...|++++|..+++.. +...++.++.+++.+....| +.+-..+.+.++..
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666442 3455555555555666666666666666665 34445555555555444444 33444555555555
Q ss_pred cCCCCc
Q 004632 696 TGTNDN 701 (741)
Q Consensus 696 ~~p~~~ 701 (741)
..|..+
T Consensus 271 ~~p~h~ 276 (299)
T KOG3081|consen 271 SHPEHP 276 (299)
T ss_pred cCCcch
Confidence 566544
No 134
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=3.2e-07 Score=54.42 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=20.7
Q ss_pred CCCCChhhhhHHHHHhHhcCChhHHHHHHccC
Q 004632 125 GFDKDDVIQTSILCTYGEFGCLDDARKVFDKM 156 (741)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (741)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0032 Score=62.19 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcchHHHHHH
Q 004632 193 EPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK--RCTTSWTAMIS 270 (741)
Q Consensus 193 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 270 (741)
+-|..+|..|++-+... ..+++++.++++...- +.+...|...|..-.+.++++..+++|.+... -++..|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45677888888777666 7788888888776543 33556777777777777888888888877543 34555555554
Q ss_pred H
Q 004632 271 C 271 (741)
Q Consensus 271 ~ 271 (741)
-
T Consensus 95 Y 95 (656)
T KOG1914|consen 95 Y 95 (656)
T ss_pred H
Confidence 3
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=6.7e-05 Score=72.88 Aligned_cols=134 Identities=12% Similarity=0.152 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHH
Q 004632 576 GMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW-ACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEG 653 (741)
Q Consensus 576 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 653 (741)
...|+++.|+..++.++. -.|+...|..+.. .+.+.++.++|.+.++++... .|+ ....-.+.++|.+.|+..+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 345666666666666665 3555544443333 566666666666666666653 233 3344455666666666666
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 654 AFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 654 A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
|+..+++. ..|.++..|..|..+|...|+..++... .+..|+-.|++++|+..+...+++
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 66666665 3455666666666666666666555442 334455556666666665555553
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0069 Score=63.77 Aligned_cols=101 Identities=17% Similarity=0.287 Sum_probs=48.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHh--hcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHH
Q 004632 73 NNFFEESILLYHKMIREQATISNFIYPSVLRAC--SSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDAR 150 (741)
Q Consensus 73 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 150 (741)
.+++..|+....++.+.. |+. .|..++.++ .+.|+.++|..+++.....+.. |..+...+-.+|.+.|+.++|.
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 445555555555554431 222 233333333 2455555555555555444433 4455555555555566666666
Q ss_pred HHHccCCC--CCceeHHHHHHHHHhCCCh
Q 004632 151 KVFDKMTS--RDVVSWSSIIASYFDNADV 177 (741)
Q Consensus 151 ~~~~~~~~--~~~~~~~~li~~~~~~g~~ 177 (741)
.+++...+ |+......+.-+|++.+++
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 66655544 3322223333444555444
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=4.8e-05 Score=67.00 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChH
Q 004632 578 HGQLNDAASLFKQMLD---SG-IKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIE 652 (741)
Q Consensus 578 ~~~~~~A~~~~~~~~~---~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 652 (741)
..+.++..+++..+.. .| ..|+.. .|..++-+....|+.+.|...++.+... ++-+...-..-+-.+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 3567788888777764 24 556665 5666666888889999999999998874 3334444444445567789999
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 653 GAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 653 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+|++++++. ..|.|..++..-+......|..-+|++-+...++..|.|..+|..|+.+|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999 45667777877777788889888999999999999999999999999999999999999999999865
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.28 E-value=0.0091 Score=62.95 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=52.0
Q ss_pred ccCChhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChhHHHH
Q 004632 208 ELCSLRPARSIHGHVLRRKI-KIDGPLGNSFIVMYSKCGDLLSAERTFVKIEK---RCTTSWTAMISCYNRSGWFQKALE 283 (741)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 283 (741)
..+++..|.+....+.+..+ .+...++.++ .+.+.|+.++|..+++.... .|..+...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34556666655555554421 1111222221 13455666666655555432 233455555556666666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHH
Q 004632 284 SFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS 318 (741)
Q Consensus 284 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 318 (741)
+|++.... -|+..-...+..++.+.+++..-.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443 3444444444555555554444333
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00069 Score=73.41 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 004632 501 TFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQ 580 (741)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 580 (741)
.+..+..+|.+.|+.+++..+|+++.+.. +.++.+.|.+...|+.. ++++|.+++.+. +..+...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44555555556666666666666665555 33555555555555555 666666655443 222444555
Q ss_pred HHHHHHHHHHHHH
Q 004632 581 LNDAASLFKQMLD 593 (741)
Q Consensus 581 ~~~A~~~~~~~~~ 593 (741)
+..+.++|.++..
T Consensus 185 ~~~~~e~W~k~~~ 197 (906)
T PRK14720 185 YVGIEEIWSKLVH 197 (906)
T ss_pred chHHHHHHHHHHh
Confidence 5666666666555
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=3.4e-05 Score=65.68 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=43.4
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632 641 MVDLLSRSGDIEGAFKMIHSM-PFPANG----SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG 715 (741)
Q Consensus 641 l~~~~~~~~~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 715 (741)
+...+...|++++|...|+.+ ...|+. .....+...+...|++++|+..++.. .-.+..+.++..++.+|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 344445555555555555555 111221 12333444555566666666665442 222334445666666666666
Q ss_pred ChHHHHHHHHH
Q 004632 716 NWDEFGKVRSI 726 (741)
Q Consensus 716 ~~~~A~~~~~~ 726 (741)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666666654
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=7.6e-05 Score=63.55 Aligned_cols=124 Identities=12% Similarity=0.145 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHH
Q 004632 568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE----VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACM 641 (741)
Q Consensus 568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 641 (741)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+......|+ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44445544 478888888888888884 3443 2344455678888999999999999988553332 2234457
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632 642 VDLLSRSGDIEGAFKMIHSMP-FPANGSIWGALLNGCRIHKRIDVMKTIEKELS 694 (741)
Q Consensus 642 ~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 694 (741)
..++...|++++|+..++... .+..+..+...+..+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788888999999999998873 33455667777888899999999999988763
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=3.3e-05 Score=63.52 Aligned_cols=61 Identities=7% Similarity=-0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTND---NGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.+..++.++.+.|++++|...++++....|++ +.++..++.++.+.|++++|...++++.+
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33344444445555555555555555444443 23344445555555555555555554444
No 144
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.15 E-value=0.0068 Score=57.39 Aligned_cols=242 Identities=15% Similarity=0.164 Sum_probs=165.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 004632 475 YQNGNSLEAINLFHQMYLNCLEMDEV--TFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQT 552 (741)
Q Consensus 475 ~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 552 (741)
.-.|+++.|.+-|+.|... |... ....+.-...+.|+.+.|.++-+...+.-.. -.......++..+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 3468888888888888642 2222 2233444445678888888887777654433 35567778888899999999
Q ss_pred HHHHHHhcC-----CCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHH
Q 004632 553 AQRVFDSMS-----ERNVV--SWSAMIDCYG---MHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKF 621 (741)
Q Consensus 553 A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 621 (741)
|+++++.-. +++.. .--.|+.+-. -..+...|...-.+..+ +.||.. .-.....++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 999988654 34432 1222332211 23456677777777666 788876 44455668999999999999
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 004632 622 YFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM----PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSVT 696 (741)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 696 (741)
+++.+-+....|+ +...+ .+.+.|+ .++.-+++. .. +.+......+..+....|++..|..--+.+...
T Consensus 285 ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 9999988654444 33222 2334444 444444443 22 446677788888899999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 004632 697 GTNDNGYYTLLSNIYAEE-GNWDEFGKVRSIMEV 729 (741)
Q Consensus 697 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 729 (741)
.|... +|..|+++-... ||-.++...+-+..+
T Consensus 359 ~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APRES-AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 98754 788888887766 999999988886655
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=2.5e-06 Score=64.53 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=56.3
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHH
Q 004632 648 SGDIEGAFKMIHSM-PFPA---NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKV 723 (741)
Q Consensus 648 ~~~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 723 (741)
.|++++|+.+++++ ...| +...+..++.++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777 2122 455666677788888888888888888 667777777777778888888888888888
Q ss_pred HHH
Q 004632 724 RSI 726 (741)
Q Consensus 724 ~~~ 726 (741)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=2.6e-05 Score=61.25 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632 638 YACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG 715 (741)
Q Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 715 (741)
+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888876 2 33445677777888888899999999999999988988888889999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 004632 716 NWDEFGKVRSIMEVT 730 (741)
Q Consensus 716 ~~~~A~~~~~~~~~~ 730 (741)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.13 E-value=8.5e-06 Score=58.06 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
.++..+...|++++|...++++++..|+++.++..++.++...|++++|..+|+++.+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356678899999999999999999999999999999999999999999999999987643
No 148
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=6.6e-05 Score=68.80 Aligned_cols=107 Identities=11% Similarity=0.025 Sum_probs=90.4
Q ss_pred CCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh-cC--CHHHHHHHHHHHhccCCCCchhHHH
Q 004632 632 EPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRI-HK--RIDVMKTIEKELSVTGTNDNGYYTL 706 (741)
Q Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~-~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 706 (741)
+-|...|..|+.+|...|+.+.|...|.+. -.++++..+..+..++.. .| +..++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457889999999999999999999999888 245677777777777533 22 5689999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhCCCccCCCC
Q 004632 707 LSNIYAEEGNWDEFGKVRSIMEVTGLKKVPGY 738 (741)
Q Consensus 707 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 738 (741)
|+..+...|++.+|...|+.|.+.....+|..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999999776666643
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.09 E-value=9.6e-06 Score=58.69 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 004632 666 NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG-NWDEFGKVRSIMEV 729 (741)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 729 (741)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999998776
No 150
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.04 E-value=0.00045 Score=57.84 Aligned_cols=133 Identities=8% Similarity=-0.048 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 004632 596 IKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA---NGSIWG 671 (741)
Q Consensus 596 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~---~~~~~~ 671 (741)
..|....-..|..++.+.|++.+|...|++...--+.-|......+.++....+++.+|...++++ ..+| ++....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 455555555666677777777777777777665333445566666666677777777777777666 2112 333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.+.+.+...|.+++|+..++.++.-.|. +......+..+.++|+..+|..-+..+-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5566667777777777777777766665 23344455566677766666655554444
No 151
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.04 E-value=0.015 Score=56.34 Aligned_cols=189 Identities=11% Similarity=0.052 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHH-------HHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHH
Q 004632 535 YIDTALTDMYAKCGDLQTAQRVFDSMS--ERNVVSW-------SAMIDCYG----MHGQLNDAASLFKQMLDSGIKPNEV 601 (741)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~-------~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~ 601 (741)
.++..++....+.++...|...+.-+. +|+...- ..+-+..+ ..-+...-+.+|+..... .-|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHH
Confidence 345555556666777777766665444 3332211 11111111 111233445566666553 23332
Q ss_pred -HHHHHHH---HHhccCC-HHHHHHHHHHHHHcCCCCCccHHHHHHH----HHHhc---CChH---HHHHHHHhCCCCC-
Q 004632 602 -TFMNILW---ACSHSGS-VEEGKFYFNAMRIFGVEPDLQHYACMVD----LLSRS---GDIE---GAFKMIHSMPFPA- 665 (741)
Q Consensus 602 -~~~~ll~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---~~~~---~A~~~~~~~~~~~- 665 (741)
....|+. -+.+.|. -++|+.+++.+++.. +-|...-+.+.. .|... ..+. +-..++++.+.+|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 2223332 3556665 778888888887721 123322222211 11111 1111 1223334445444
Q ss_pred ---CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 004632 666 ---NGSIWGALLNG--CRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM 727 (741)
Q Consensus 666 ---~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 727 (741)
+...-+.|..+ +..+|++.++.-.-.=+.+..| ++.+|..+|-+++...++++|.++++.+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 23355666665 5788999998887777778888 8889999999999999999999999865
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=0.00013 Score=59.99 Aligned_cols=104 Identities=8% Similarity=-0.086 Sum_probs=66.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRIFGV--EPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA----NGSIWGALL 674 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~----~~~~~~~l~ 674 (741)
++..+...+...|++++|.+.|+.+.+... +.....+..++.++.+.|++++|...++++ ...| ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777765321 111334555677777777777777777766 2112 245566677
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 004632 675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYT 705 (741)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 705 (741)
.++.+.|+.++|...++++.+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777788888888888888888887765433
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00022 Score=70.36 Aligned_cols=122 Identities=13% Similarity=0.127 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCH
Q 004632 538 TALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSV 616 (741)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~ 616 (741)
..++..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+ ..| +...+..-...|...+++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCH
Confidence 34555666678888888888888876666666778888888888888888888887 345 444555556678888889
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCC
Q 004632 617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP 662 (741)
Q Consensus 617 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (741)
+.|+++.+++.+.. +-+..+|..|+.+|...|+++.|+-.++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999998888742 2346688889999999999999998888884
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=5.7e-05 Score=74.95 Aligned_cols=108 Identities=8% Similarity=-0.004 Sum_probs=90.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 004632 606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRI 683 (741)
Q Consensus 606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 683 (741)
-...+...|++++|+..|+++++.. +-+...|..++.+|.+.|++++|+..++++ -.+.+...+..++.++...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3456778899999999999999854 235678888899999999999999999998 3455778889999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 004632 684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEE 714 (741)
Q Consensus 684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 714 (741)
++|...++++++++|+++.+...+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998887776664443
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=7.4e-05 Score=67.97 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCCh
Q 004632 574 CYGMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDI 651 (741)
Q Consensus 574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 651 (741)
-+.+.+++++|+..|.++++ +.|+. +-|..-..+|++.|.++.|++-.+..+..+ |. ...|..|+.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcH
Confidence 45566777777777777777 66643 344455556777777777777776666532 22 45666666666666666
Q ss_pred HHHHHHHHhC-CCCCCHHHH
Q 004632 652 EGAFKMIHSM-PFPANGSIW 670 (741)
Q Consensus 652 ~~A~~~~~~~-~~~~~~~~~ 670 (741)
++|++.|++. ...|+..+|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhccCCCcHHH
Confidence 6666666666 445544444
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00024 Score=67.39 Aligned_cols=162 Identities=11% Similarity=0.051 Sum_probs=117.9
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH-----
Q 004632 566 VSWSAM-IDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY----- 638 (741)
Q Consensus 566 ~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----- 638 (741)
.+|..+ ..++...|++++|...--...+ +.+... ....-..++...++.+.+...|++.+..+ |+...-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~ 244 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASM 244 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhh
Confidence 444443 2456678889888888777776 444322 22222224566788889999998887643 442221
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 004632 639 --------ACMVDLLSRSGDIEGAFKMIHSM-PF-----PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYY 704 (741)
Q Consensus 639 --------~~l~~~~~~~~~~~~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 704 (741)
..=++-..+.|++.+|.+.+.+. .. .|+...|.....+..+.|+..+|+.--+.++.++|.-...+
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 11234456788999999999888 33 34455677777778899999999999999999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 705 TLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 705 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
..-+.+|...++|++|++.|++..+..
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987744
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.3e-05 Score=48.56 Aligned_cols=34 Identities=32% Similarity=0.725 Sum_probs=29.9
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC
Q 004632 162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEPD 195 (741)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 195 (741)
.+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3788999999999999999999999998888887
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.6e-05 Score=48.14 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=27.1
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 004632 62 MWAVLIKCYMWNNFFEESILLYHKMIREQATISN 95 (741)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 95 (741)
+||.+|++|++.|++++|..+|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6788888888888888888888888888877763
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=3.6e-05 Score=69.90 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=89.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 004632 607 LWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRID 684 (741)
Q Consensus 607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 684 (741)
..-+.+.++|.+|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+.. ...| ...+|..|..++...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 445778899999999999999853 335777778888999999999999998888 4444 5668999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 004632 685 VMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN 716 (741)
Q Consensus 685 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 716 (741)
+|++.|+++++++|+|..+...|-++--+.+.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999888887765444443
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2e-05 Score=47.34 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=24.0
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 004632 61 FMWAVLIKCYMWNNFFEESILLYHKMIREQATI 93 (741)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 93 (741)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.0002 Score=71.13 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=75.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 004632 571 MIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG 649 (741)
Q Consensus 571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 649 (741)
....+...|++++|+..|+++++ ..|+ ...|..+..+|...|++++|+..++++++.. +.+...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 34566778999999999999998 5665 4477777778999999999999999998854 235677888899999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHH
Q 004632 650 DIEGAFKMIHSM-PFPANGSI 669 (741)
Q Consensus 650 ~~~~A~~~~~~~-~~~~~~~~ 669 (741)
++++|+..|+++ ...|+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 999999999888 44444333
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00016 Score=63.79 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632 638 YACMVDLLSRSGDIEGAFKMIHSM-P---FPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA 712 (741)
Q Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~-~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 712 (741)
+..++..+...|++++|...+++. . .++ ....+..++..+...|++++|...++++++..|.+...+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 333444444444444444444444 1 111 12345555666666666666666666666666666666666666666
Q ss_pred hcCC
Q 004632 713 EEGN 716 (741)
Q Consensus 713 ~~g~ 716 (741)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 6555
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=2.6e-05 Score=46.79 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=25.0
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 004632 162 VSWSSIIASYFDNADVSEGLKMFHSMVREGVEP 194 (741)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 194 (741)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00051 Score=60.56 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHH
Q 004632 565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN--EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMV 642 (741)
Q Consensus 565 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 642 (741)
...+..+...+...|++++|...|++..+....|. ...+..+...+...|++++|...++++.+.. +-+...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566666667777777777777777776322222 2355666666777777777777777776632 12344555566
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632 643 DLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG 715 (741)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 715 (741)
.++...|+...+..-++.. ...+++|.++++++.+.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 6666666655544333221 123678888899988888887 444444444444
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.81 E-value=0.00063 Score=70.59 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHHHH
Q 004632 563 RNVVSWSAMIDCYGM--H---GQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHS--------GSVEEGKFYFNAMRI 628 (741)
Q Consensus 563 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 628 (741)
.|...|...+++... . ++...|..+|+++++ ..|+.. .+..+..++... .+...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666655332 2 236788889999998 778754 444443333221 122333444444333
Q ss_pred c-CCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 629 F-GVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 629 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
. ..+.+...|..+.-.....|++++|...++++ ...|+...|..++..+...|+.++|.+.++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2 22334566777766666778888888888888 55567778888888888888888888888888888888774
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=2.6e-05 Score=56.23 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=38.9
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 678 RIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 678 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.+.|++++|...++++...+|++..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777777765543
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0024 Score=61.47 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHhccC
Q 004632 542 DMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMH-GQLNDAASLFKQMLDS----GIKPN--EVTFMNILWACSHSG 614 (741)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~ll~~~~~~~ 614 (741)
..|...|++..|-..+.. +...|... |+++.|++.|+++.+. | .+. ..++..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 456667777776655443 45556666 7788888887776642 2 221 125566666778888
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----c-cHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCC--HHHHHHHHHHHHh--
Q 004632 615 SVEEGKFYFNAMRIFGVEPD-----L-QHYACMVDLLSRSGDIEGAFKMIHSM-P----FPAN--GSIWGALLNGCRI-- 679 (741)
Q Consensus 615 ~~~~a~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~----~~~~--~~~~~~l~~~~~~-- 679 (741)
++++|.++|+++.......+ . ..+-..+-++...|+.-.|.+.+++. . +..+ ......++.++-.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 88888888888776322211 1 12223344556677887887777775 1 1122 3345555655533
Q ss_pred cCCHHHHHHHHHHHhccCC
Q 004632 680 HKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 680 ~g~~~~a~~~~~~~~~~~p 698 (741)
...++.+..-|+.+..++|
T Consensus 250 ~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 250 VEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHcccCccHH
Confidence 2345555555555554443
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=5.7e-05 Score=53.75 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 641 MVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 641 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
++..+...|++++|.+.++++ ..|.+...+..++.++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788899999999999998 3445777889999999999999999999999999999875
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.00022 Score=62.67 Aligned_cols=93 Identities=8% Similarity=-0.161 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 004632 635 LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA----NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSN 709 (741)
Q Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 709 (741)
...+..++..+...|++++|...+++. ...| ...++..+...+...|++++|...+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777778888888887777 2212 23477888888899999999999999999999998888888888
Q ss_pred HHh-------hcCChHHHHHHHHHH
Q 004632 710 IYA-------EEGNWDEFGKVRSIM 727 (741)
Q Consensus 710 ~~~-------~~g~~~~A~~~~~~~ 727 (741)
+|. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666555543
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.0003 Score=54.97 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=44.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 004632 607 LWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRID 684 (741)
Q Consensus 607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 684 (741)
...+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.+++. ..+.+...+..++..+...|+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 334444455555555555444421 112233444445555555555555555544 12223345555555555666666
Q ss_pred HHHHHHHHHhccCC
Q 004632 685 VMKTIEKELSVTGT 698 (741)
Q Consensus 685 ~a~~~~~~~~~~~p 698 (741)
.|...++++.+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666555554
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=0.0001 Score=54.03 Aligned_cols=58 Identities=5% Similarity=-0.092 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632 675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
..+...+++++|.+++++++..+|+++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888888888888888888888888888876543
No 172
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0099 Score=56.87 Aligned_cols=328 Identities=9% Similarity=-0.015 Sum_probs=160.4
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHH
Q 004632 373 EYARKGMSKEALELLVQMQTWGLMPD-SFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNL 451 (741)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 451 (741)
.+.+..++..|+..+....+. -|| ..-|..-...+...++++.+.--.+.-++..+..........+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 445556666777777766664 233 33333334444555555555554444444444444444444555555555555
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHhccccHHhHHHHHHHHHHcC
Q 004632 452 AYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCL-EMDEVTFLTAI-QACSNIGQLEKGKWVHHKLISYG 529 (741)
Q Consensus 452 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~ 529 (741)
|...++.- ..+ ....++..++....... +|...++..+- .++.-.|+.++|..+-....+.+
T Consensus 136 A~~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 136 AEEKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred HHHHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 55444410 000 11112222222222111 13333333332 23344566666665554444332
Q ss_pred CCCCchhHHHHHH--HHHhcCCHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004632 530 VRKDIYIDTALTD--MYAKCGDLQTAQRVFDSMSERNVV---------------SWSAMIDCYGMHGQLNDAASLFKQML 592 (741)
Q Consensus 530 ~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~~~ 592 (741)
.. ..+...++ ++.-.++.+.|...|++...-++. .+..-..-..+.|++..|.+.|.+.+
T Consensus 200 ~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 200 AT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred cc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 11 11122222 223355666777777666642221 12222233456778888888888877
Q ss_pred HcCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 004632 593 DSGIKPN-----EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA 665 (741)
Q Consensus 593 ~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~ 665 (741)
. +.|+ ...|.....+..+.|+.++|+.-.++..+. .+. ...|..-.+++...++|++|.+-+++. ....
T Consensus 277 ~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 277 N--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred c--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6 5554 334555556677778888888887777652 222 233334445566667788888877776 2111
Q ss_pred ---CHHHHHHHHHHHHhc---------------CCHHHHHHHHHHHhccCCCCc--------hhHHHHHHHHhhcCChHH
Q 004632 666 ---NGSIWGALLNGCRIH---------------KRIDVMKTIEKELSVTGTNDN--------GYYTLLSNIYAEEGNWDE 719 (741)
Q Consensus 666 ---~~~~~~~l~~~~~~~---------------g~~~~a~~~~~~~~~~~p~~~--------~~~~~l~~~~~~~g~~~~ 719 (741)
...++.....++-++ .+.+.-...-+.++...|+-. .-+...+.+|.-.++..+
T Consensus 353 s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 353 DCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred ccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHH
Confidence 222333222222221 122222222233444445422 125667788888888888
Q ss_pred HHHHHH
Q 004632 720 FGKVRS 725 (741)
Q Consensus 720 A~~~~~ 725 (741)
+.++..
T Consensus 433 r~r~ds 438 (486)
T KOG0550|consen 433 RVRFDS 438 (486)
T ss_pred Hhhccc
Confidence 776654
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=97.73 E-value=0.00069 Score=56.50 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=62.5
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632 645 LSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722 (741)
Q Consensus 645 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 722 (741)
+...|++++|..+|+-+ -.+-+...|..|+.++...+++++|...|..+..++++|+..+...+.+|...|+.++|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 44667777777777766 2344566777777777777778888888877777777777777778888888888888877
Q ss_pred HHHHHHh
Q 004632 723 VRSIMEV 729 (741)
Q Consensus 723 ~~~~~~~ 729 (741)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7776655
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.71 E-value=5.1e-05 Score=54.66 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=40.5
Q ss_pred HhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 004632 646 SRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLS 708 (741)
Q Consensus 646 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 708 (741)
...|++++|++.++++ ..|.+...+..++.++.+.|++++|..+++++...+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3456667777777666 34456666666777777777777777777777777777665555544
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=0.0001 Score=55.71 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHH
Q 004632 578 HGQLNDAASLFKQMLDSGIKP---NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGA 654 (741)
Q Consensus 578 ~~~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 654 (741)
.|+++.|+.+++++.+. .| +...+..+..+|.+.|++++|..+++. .+.+. .+....-.++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666663 33 223344455566666666666666666 22111 1123333446666666666666
Q ss_pred HHHHHh
Q 004632 655 FKMIHS 660 (741)
Q Consensus 655 ~~~~~~ 660 (741)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 176
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.076 Score=51.79 Aligned_cols=57 Identities=11% Similarity=0.118 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHH
Q 004632 576 GMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYA 639 (741)
Q Consensus 576 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 639 (741)
...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 345666666665555555 6666666666666666666666666666543 45555444
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.62 E-value=0.00057 Score=64.69 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=94.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRI----FGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM-------P-FPANGS 668 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~-~~~~~~ 668 (741)
.|..|...|.-.|+++.|+...+.-+. .|-.. ....+..+.++++-.|+++.|.+.++.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 577777777778999999877654433 33222 2456788999999999999999998875 2 233455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc----C--CCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVT----G--TNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
....|...|.-..++++|+.+..+=+++ + .....++..|+.+|-..|..++|+.+.++-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6677888888888899999887765432 2 22445788999999999999999999887665
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.012 Score=54.80 Aligned_cols=173 Identities=10% Similarity=0.037 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 004632 539 ALTDMYAKCGDLQTAQRVFDSMSE--RNVV----SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV--TFMNILWAC 610 (741)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~ 610 (741)
.....+...|++++|.+.|+++.. |+.. ..-.++.++.+.+++++|...+++..+ ..|+.. .+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHH
Confidence 334445567777777777777763 3221 123345566777777777777777777 444332 333333332
Q ss_pred hc--cC---------------C---HHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHH
Q 004632 611 SH--SG---------------S---VEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIW 670 (741)
Q Consensus 611 ~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (741)
+. .+ + ..+|...|+++++. -|+. .-..+|...+..+...- ...-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~l-a~~e 178 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRL-AKYE 178 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHH-HHHH
Confidence 21 11 1 12333444444431 1221 11223332222221000 0011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
..+...+.+.|.+..|..-++.+++..|+.+ .++..+..+|.+.|..++|.++...+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 2345568889999999999999999998865 4688889999999999999998876643
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0023 Score=61.19 Aligned_cols=135 Identities=13% Similarity=0.163 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 004632 566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWA-CSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDL 644 (741)
Q Consensus 566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (741)
.+|..+++...+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888999999999998632 2233344444443 33457778899999999884 45577888888999
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 645 LSRSGDIEGAFKMIHSM-PFPAN----GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 645 ~~~~~~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
+.+.++.+.|..+|++. ..-+. ...|...+..-.+.|+.+.+.++.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999998 32333 358999999999999999999999999998888554
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0027 Score=66.02 Aligned_cols=133 Identities=13% Similarity=0.034 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHHh--ccC---CHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhc--------CChHHHHHHHHhC
Q 004632 596 IKPNEVTFMNILWACS--HSG---SVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRS--------GDIEGAFKMIHSM 661 (741)
Q Consensus 596 ~~p~~~~~~~ll~~~~--~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~~~ 661 (741)
...|...|...+.+.. ..+ +...|..+|+++.+. .|+ ...+..+..++... +++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4556778888888643 333 377899999999984 455 44555544444332 1234455555553
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 662 ----PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 662 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
..+.++..+..+.......|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2445667787777777788999999999999999999 57899999999999999999999999887643
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00011 Score=42.87 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=20.3
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004632 62 MWAVLIKCYMWNNFFEESILLYHKMIREQ 90 (741)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 90 (741)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.55 E-value=0.00088 Score=62.67 Aligned_cols=98 Identities=9% Similarity=0.023 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHhcCChHHHHHHHHhC--CC---CCCHHHHHH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD----LQHYACMVDLLSRSGDIEGAFKMIHSM--PF---PANGSIWGA 672 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~---~~~~~~~~~ 672 (741)
.|...+....+.|++++|...|+.+.+.. |+ +..+..++.+|...|++++|...|+++ .. +.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444455577777777777776632 22 245556666666777777777666666 11 223444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 673 LLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
++..+...|++++|...++++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55556666667777777776666666654
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.15 Score=52.46 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----ChhhHHHHHHHhhccCChhhHHHHH
Q 004632 245 GDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEP----NLITLITVLGSCAGLGWLREGKSVH 320 (741)
Q Consensus 245 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~ 320 (741)
|++++|++++-.+..+|.. |....+.|++-...++++.- |-.. -...|+.+...+.....++.|.+.|
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777666655432 34444555555555544321 1111 1124555555555555555555555
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHH
Q 004632 321 CQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELL 387 (741)
Q Consensus 321 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 387 (741)
..-.. ....+..+.+..++++-+.+.+.+++ +....-.+.+++.+.|.-++|.+.+
T Consensus 820 ~~~~~----------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 820 SYCGD----------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred Hhccc----------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 43211 12234444444444444444444443 2233444555555555555555544
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.52 E-value=6.4e-05 Score=44.52 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=31.2
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632 689 IEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722 (741)
Q Consensus 689 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 722 (741)
+++++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.51 E-value=0.0053 Score=51.11 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632 569 SAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR 647 (741)
Q Consensus 569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (741)
-.+..-+...|++++|.++|+-+.. +.|... -|..|..+|-..|++++|+..|..+.... +-++..+-.++.++..
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344444556666666666666555 455433 34444445555566666666666665543 2345555556666666
Q ss_pred cCChHHHHHHHHhC
Q 004632 648 SGDIEGAFKMIHSM 661 (741)
Q Consensus 648 ~~~~~~A~~~~~~~ 661 (741)
.|+.+.|.+.|+..
T Consensus 116 lG~~~~A~~aF~~A 129 (157)
T PRK15363 116 CDNVCYAIKALKAV 129 (157)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666655544
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.0015 Score=52.35 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=43.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCC---CHHHHHHHHHHHH
Q 004632 606 ILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPA---NGSIWGALLNGCR 678 (741)
Q Consensus 606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~---~~~~~~~l~~~~~ 678 (741)
+..++-..|+.++|+.+|++....|...+ ...+-.+...|...|++++|..++++. .+|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666554332 223344555555555555555555554 1111 2222222333445
Q ss_pred hcCCHHHHHHHHHHH
Q 004632 679 IHKRIDVMKTIEKEL 693 (741)
Q Consensus 679 ~~g~~~~a~~~~~~~ 693 (741)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555554443
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00014 Score=42.43 Aligned_cols=31 Identities=29% Similarity=0.632 Sum_probs=23.6
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 004632 162 VSWSSIIASYFDNADVSEGLKMFHSMVREGV 192 (741)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 192 (741)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877653
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0021 Score=56.48 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004632 567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN--EVTFMNILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
.|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555555555555555555554211111 12444444555555555555555555554
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.11 Score=50.04 Aligned_cols=96 Identities=9% Similarity=0.152 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC--cc
Q 004632 567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-----EV-TFMNILWACSHSGSVEEGKFYFNAMRIF--GVEPD--LQ 636 (741)
Q Consensus 567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~ 636 (741)
++..+...+.+.|++++|.++|++....-...+ .. .+...+-++...|+...|.+.+++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 344566777888888888888888776432211 11 2223333556678888888888887652 33222 23
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCC
Q 004632 637 HYACMVDLLSR--SGDIEGAFKMIHSMP 662 (741)
Q Consensus 637 ~~~~l~~~~~~--~~~~~~A~~~~~~~~ 662 (741)
....|+.++-. ...+++|+.-|+++.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45556666643 224566666666663
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.46 E-value=0.037 Score=56.12 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=34.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004632 606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDV 685 (741)
Q Consensus 606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 685 (741)
++..+...++|++|..+-++.-+ +.|| .|....+.++...++++|.+. +.++|+..+
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFeEAqkA-------------------fhkAGr~~E 835 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFEEAQKA-------------------FHKAGRQRE 835 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHHHHHHH-------------------HHHhcchHH
Confidence 34444555555555544443211 1222 233344444555555555444 355677778
Q ss_pred HHHHHHHHhc
Q 004632 686 MKTIEKELSV 695 (741)
Q Consensus 686 a~~~~~~~~~ 695 (741)
|..+++++..
T Consensus 836 A~~vLeQLtn 845 (1081)
T KOG1538|consen 836 AVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhhh
Confidence 8888877653
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.00026 Score=51.13 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=50.6
Q ss_pred ccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 004632 635 LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK-RIDVMKTIEKELSVTGT 698 (741)
Q Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 698 (741)
...|..++..+...|++++|+..|++. -.|.+...+..++.++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777788888888888888888887 34456778888888888888 68888888888888877
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.41 E-value=0.00073 Score=66.22 Aligned_cols=66 Identities=8% Similarity=-0.210 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 664 PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY---YTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 664 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
|.+...+++++.++.+.|++++|+..++++++++|++..+ |+.++.+|...|+.++|++.+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666533 66666666666666666666666655
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.39 E-value=0.047 Score=55.41 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHh
Q 004632 127 DKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEAC 206 (741)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 206 (741)
.+....+.+-+..|..+|.+++|.++---- -....|..|......+=+++-|.+.|.+.+.. -|..+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------~~L~l---- 619 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLG--VTDTDWRELAMEALEALDFETARKAYIRVRDL-------RYLEL---- 619 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------HHHHH----
Confidence 344445555566777888888776542110 01123555544444444555555554443321 01111
Q ss_pred cccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 004632 207 GELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFV 286 (741)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 286 (741)
..-++.+.+.|-.|+... +...++-.|.+.+|-++|.+ .|.-..|+++|.
T Consensus 620 ---------i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyT 669 (1081)
T KOG1538|consen 620 ---------ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYT 669 (1081)
T ss_pred ---------HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHH
Confidence 122455566666666543 34456667888888877664 455566666666
Q ss_pred HHH
Q 004632 287 KML 289 (741)
Q Consensus 287 ~m~ 289 (741)
.|+
T Consensus 670 DlR 672 (1081)
T KOG1538|consen 670 DLR 672 (1081)
T ss_pred HHH
Confidence 553
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.34 E-value=0.0028 Score=59.34 Aligned_cols=84 Identities=7% Similarity=-0.118 Sum_probs=45.0
Q ss_pred HhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCCh
Q 004632 646 SRSGDIEGAFKMIHSM-PFPAN----GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNW 717 (741)
Q Consensus 646 ~~~~~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~ 717 (741)
.+.|++++|+..|+.. ..-|+ +..+..++.++...|++++|...|+++.+..|+++ .++..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4445566666555555 11121 23455555555666666666666666665555432 3344445555566666
Q ss_pred HHHHHHHHHHHh
Q 004632 718 DEFGKVRSIMEV 729 (741)
Q Consensus 718 ~~A~~~~~~~~~ 729 (741)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0022 Score=63.69 Aligned_cols=118 Identities=10% Similarity=0.066 Sum_probs=85.1
Q ss_pred CCChhhhhHHHHHhHhcCChhHHHHHHccCCC-C-----CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHH
Q 004632 127 DKDDVIQTSILCTYGEFGCLDDARKVFDKMTS-R-----DVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTML 200 (741)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 200 (741)
+.+......++.......+++.+..++-+.++ | -..|.+++++.|...|..+.++.+++.=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444455556666666667777777666653 1 12356688888888888888888888888888889988998
Q ss_pred HHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 004632 201 SLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKC 244 (741)
Q Consensus 201 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 244 (741)
.+|+.+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777666666655555444443
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.32 E-value=0.17 Score=48.50 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=151.7
Q ss_pred CcccHHHHHHH--HHHcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHH
Q 004632 363 NILSWNMLISE--YARKGMSKEALELLVQMQTWGLMPDSF--SVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSS 438 (741)
Q Consensus 363 ~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (741)
|......++.+ -.-.|+++.|.+-|+.|... |... -+..+.-...+.|..+.|.++-+..-..-+........
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 44444444443 34478899999999998752 2222 12233333457788888888888888777777777888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC-----CCch--HHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 004632 439 LIDMYSKCGFKNLAYLLFERIQQ-----KSVV--MWNSMICGFY---QNGNSLEAINLFHQMYLNCLEMDEVT-FLTAIQ 507 (741)
Q Consensus 439 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~ 507 (741)
.+...+..|+|+.|+++++.-.. ++.. .-..|+.+-. -..+...|...-.+..+ +.||..- -.....
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAr 271 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAAR 271 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHH
Confidence 88888888888888888875432 2221 1112222111 12234444444433333 4455332 223445
Q ss_pred HHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH----HHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 004632 508 ACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTA----QRVFDSMSERNVVSWSAMIDCYGMHGQLND 583 (741)
Q Consensus 508 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (741)
++.+.|+..++-.+++.+-+..+.|++.. +-.+.+.|+.... .+-+..|+..+..+...+..+-...|++..
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence 67777888888888887777666655421 2223445543211 122444555666666667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHc
Q 004632 584 AASLFKQMLDSGIKPNEVTFMNILWA-CSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 584 A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~ 629 (741)
|..--+.... ..|....|..|.+. -...|+-.++...+.+..+.
T Consensus 348 ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 348 ARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7666666655 56777777766664 34447777777777777663
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.31 E-value=0.0033 Score=60.18 Aligned_cols=129 Identities=12% Similarity=0.150 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 004632 601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR-SGDIEGAFKMIHSM--PFPANGSIWGALLNGC 677 (741)
Q Consensus 601 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 677 (741)
.+|..++...-+.+..+.|..+|.++++.+ ..+..+|...+..-.+ .++.+.|.++|+.. .++.+...|..++..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 357778888888888999999999998632 3355666666666444 46666699999998 5778899999999999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 678 RIHKRIDVMKTIEKELSVTGTNDN---GYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 678 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.+.++.+.|..+|++++..-|.+. .+|...+..=.+.|+.+...++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998877655 57888888888899999999999988773
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.27 Score=50.69 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=94.8
Q ss_pred cCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----cchHHHHHHHHHhcCChhHHHH
Q 004632 209 LCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRC-----TTSWTAMISCYNRSGWFQKALE 283 (741)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~ 283 (741)
-|++++|+++|-.+-++. .-|.++.+.||+-...++++.-...+ ..+|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777776655442 34566777788777777776533211 2268888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 004632 284 SFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERN 363 (741)
Q Consensus 284 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 363 (741)
.|..-.. -...+.++....++++.+.+.+. .|++..+...+..++.+.|--++|.+.|-+...|.
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk 882 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK 882 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH
Confidence 7765321 12234455444444443333322 25788888889999998888887777766554442
Q ss_pred cccHHHHHHHHHHcCCchHHHHHHHHH
Q 004632 364 ILSWNMLISEYARKGMSKEALELLVQM 390 (741)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (741)
+.+..|...+++.+|.++-+..
T Consensus 883 -----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 -----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhc
Confidence 2344455556666666655443
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.31 E-value=0.0018 Score=49.67 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=64.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCC-CCChhhHHHHHHHhcccC--------ChhhHHHHHHHHHHhcCCCchHHHHH
Q 004632 166 SIIASYFDNADVSEGLKMFHSMVREGV-EPDFVTMLSLAEACGELC--------SLRPARSIHGHVLRRKIKIDGPLGNS 236 (741)
Q Consensus 166 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (741)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .......+|+.++..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556667999999999999999999 899999999999987643 23446788999999999999999999
Q ss_pred HHHHHHh
Q 004632 237 FIVMYSK 243 (741)
Q Consensus 237 li~~~~~ 243 (741)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9887754
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.0033 Score=53.68 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=74.8
Q ss_pred HhccCCHHHHHHHHHHHHH--cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004632 610 CSHSGSVEEGKFYFNAMRI--FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMK 687 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 687 (741)
....++.+.+...++++.. .|........ ..........+++. -..+...++..+...|++++|.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 3456788888888888877 3322111011 11222222223222 1234566777788999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh-----CCCccCCC
Q 004632 688 TIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV-----TGLKKVPG 737 (741)
Q Consensus 688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 737 (741)
..+++++..+|-+...|..++.+|...|+..+|+++|+++.+ .|+.|.|.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 999999999999999999999999999999999999998754 47766653
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.056 Score=45.81 Aligned_cols=94 Identities=9% Similarity=0.104 Sum_probs=38.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 004632 533 DIYIDTALTDMYAKCGDLQTAQRVFDSMSE----RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN---EVTFMN 605 (741)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~ 605 (741)
++..-..+..+....|+..+|...|++... .|....-.+.++....+++..|...++++-+. .|+ ..+...
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchHH
Confidence 333333344444444444444444443331 23333444444444444444444444444442 121 112223
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH
Q 004632 606 ILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 606 ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
+.+.+...|++.+|..-|+...+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 33344444444444444444444
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.0035 Score=59.60 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=44.2
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHH--H--hcCC--cchhHHHHHHH
Q 004632 373 EYARKGMSKEALELLVQMQTWGLMPDS----FSVASSLSACGNVGSLQLGLQIHGHVI--K--IDCK--DEFVQSSLIDM 442 (741)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~--~~~~~~~l~~~ 442 (741)
-+++.|+......+|+...+.|- .|. ..|..+..++.-.+++++|.+++..=+ . .+.. .......+.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35667777777777777776652 232 234444555666677777776654311 1 1111 11134445555
Q ss_pred HHhcCCHHHHHHHH
Q 004632 443 YSKCGFKNLAYLLF 456 (741)
Q Consensus 443 ~~~~~~~~~a~~~~ 456 (741)
+.-.|.+++|....
T Consensus 105 lKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 105 LKVKGAFDEALTCC 118 (639)
T ss_pred hhhhcccchHHHHH
Confidence 55566666665443
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.28 E-value=0.067 Score=49.85 Aligned_cols=63 Identities=16% Similarity=0.028 Sum_probs=37.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccccHHhHHHHHHHHHHcCCCCC
Q 004632 470 MICGFYQNGNSLEAINLFHQMYLNCLEMDEVTF---LTAIQACSNIGQLEKGKWVHHKLISYGVRKD 533 (741)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 533 (741)
....+...|++++|.+.|+++...-..+ .... -.+..++.+.++++.|...+++.++..+...
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 3444556777777777777776642222 2221 2345566677777777777777766544433
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.001 Score=48.61 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=52.0
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632 642 VDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL 707 (741)
Q Consensus 642 ~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 707 (741)
...|.+.+++++|.++++++ -.|.+...+...+.++...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35677888888888888888 3455677778888888899999999999999999998877654433
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.0045 Score=47.52 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------cHHhHHHHHHHHHHcCCCCCchhH
Q 004632 467 WNSMICGFYQNGNSLEAINLFHQMYLNCL-EMDEVTFLTAIQACSNIG--------QLEKGKWVHHKLISYGVRKDIYID 537 (741)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 537 (741)
....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .....+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666777999999999999999999 899999999999876532 344567788999999999999999
Q ss_pred HHHHHHHHh
Q 004632 538 TALTDMYAK 546 (741)
Q Consensus 538 ~~l~~~~~~ 546 (741)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887765
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.24 E-value=0.00059 Score=43.57 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 004632 668 SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSN 709 (741)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 709 (741)
.++..+..++...|++++|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988874
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.24 E-value=0.23 Score=48.46 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH-HHHHH
Q 004632 566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSG-IKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY-ACMVD 643 (741)
Q Consensus 566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 643 (741)
..|...+..-.+....+.|..+|-++.+.| +.++...++.++..++ .|+...|-.+|+.-... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345666666666667777777777777776 4556667777776554 36777777777765542 2333332 34455
Q ss_pred HHHhcCChHHHHHHHHhC--CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 644 LLSRSGDIEGAFKMIHSM--PFP--ANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 644 ~~~~~~~~~~A~~~~~~~--~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
.+.+.++-+.|..+|+.. ... .-...|..++..-..-|+...+..+-+++.+..|+..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 566777777777777754 112 2245677777777777777777777777777777643
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.023 Score=50.85 Aligned_cols=134 Identities=7% Similarity=0.000 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH-----HH
Q 004632 568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC-----MV 642 (741)
Q Consensus 568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 642 (741)
-++++.++.-.|.+.-...++++.++....-++.....|.+.-.+.|+.+.|..+|++..+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455566666777888888888888854333556667777777888888888888887776322334333332 23
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 643 DLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
..+.-.+++.+|...+.++ ..+.++...++-.-+..-.|+...|.+.++.+.+..|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3455566777888888777 2344566666666666667888888888888888888743
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.012 Score=47.23 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=57.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHHHHhcCC---cchhHHHHHHHHH
Q 004632 370 LISEYARKGMSKEALELLVQMQTWGLMPDS--FSVASSLSACGNVGSLQLGLQIHGHVIKIDCK---DEFVQSSLIDMYS 444 (741)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 444 (741)
+..++-..|+.++|+.+|++....|...+. ..+..+..++...|++++|..+++......+. ...+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566677888888888888777665442 23444555577777777777777777766554 2224444555666
Q ss_pred hcCCHHHHHHHHHhcc
Q 004632 445 KCGFKNLAYLLFERIQ 460 (741)
Q Consensus 445 ~~~~~~~a~~~~~~~~ 460 (741)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777666655443
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0049 Score=59.12 Aligned_cols=137 Identities=10% Similarity=-0.042 Sum_probs=99.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCh
Q 004632 572 IDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDI 651 (741)
Q Consensus 572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (741)
...|.+.|++..|...|++++.. -+.... -+.++...... .-...+..+.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~~~-----------~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYRRS-----------FDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhcccc-----------CCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 45677777787777777776652 111110 01111111111 1123466788899999999
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHH-HHHHHHHH
Q 004632 652 EGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEF-GKVRSIME 728 (741)
Q Consensus 652 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 728 (741)
.+|++..++. -.+++...+..-+.++...|+++.|...|+++++++|.|..+-..|+.+--+...+++. .++|..|.
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888 45678889999999999999999999999999999999999999998877776665554 78898887
Q ss_pred h
Q 004632 729 V 729 (741)
Q Consensus 729 ~ 729 (741)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 6
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.17 E-value=0.26 Score=47.82 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 004632 544 YAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYF 623 (741)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 623 (741)
+...|+...|.++..+..-|+..-|...+.+++..++|++-.++... .-++..|..++.+|.+.|+..+|..+.
T Consensus 187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 34445555555555555445555555555555555555444433211 112244444455555555555554444
Q ss_pred HH
Q 004632 624 NA 625 (741)
Q Consensus 624 ~~ 625 (741)
.+
T Consensus 261 ~k 262 (319)
T PF04840_consen 261 PK 262 (319)
T ss_pred Hh
Confidence 43
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.14 E-value=0.18 Score=49.35 Aligned_cols=158 Identities=12% Similarity=0.020 Sum_probs=83.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 004632 542 DMYAKCGDLQTAQRVFDSMSER-------NVVSWSAMIDCYGM---HGQLNDAASLFKQMLDSGIKPNEVTFMNILWACS 611 (741)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 611 (741)
-.|-...+++...++++.+..+ ....-....-++-+ .|+.++|+.++..+....-.++..++..+.+.|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3455555555555555555531 11111122333444 5666666666666544444555555555554431
Q ss_pred ----c-----cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChH----HHHHHH---HhC-------CCCCCHH
Q 004632 612 ----H-----SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIE----GAFKMI---HSM-------PFPANGS 668 (741)
Q Consensus 612 ----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~---~~~-------~~~~~~~ 668 (741)
. ....++|+..|.+.-+ +.|+.++=-.++..+...|... +..++- ... ....+-.
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 1 1235566666666554 2244332223333333344321 222222 111 1233444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
.+.+++.++.-.|++++|.+.++++.++.|+.-
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 557788888999999999999999999987754
No 213
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.14 E-value=0.013 Score=58.37 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 004632 468 NSMICGFYQNGNSLEAINLFHQMYLN--CLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA 545 (741)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 545 (741)
..+++......+.+.+..++.+.... ....-+.|..++++.|.+.|..+.+..++..=...|+-||..+++.+|+.+.
T Consensus 70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl 149 (429)
T PF10037_consen 70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL 149 (429)
T ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence 33333333344444444444444432 1111222333444444444444444444444444444444444444444444
Q ss_pred hcCCHHHHHHHHHhc
Q 004632 546 KCGDLQTAQRVFDSM 560 (741)
Q Consensus 546 ~~g~~~~A~~~~~~~ 560 (741)
+.|++..|.++...|
T Consensus 150 ~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 150 KKGNYKSAAKVATEM 164 (429)
T ss_pred hcccHHHHHHHHHHH
Confidence 444444444444443
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.08 E-value=0.01 Score=48.47 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=69.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHh
Q 004632 641 MVDLLSRSGDIEGAFKMIHSM----PFPA-NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG---YYTLLSNIYA 712 (741)
Q Consensus 641 l~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~ 712 (741)
-+....+.|++++|.+.|+.+ +..+ ...+-..++.++.+.+++++|...+++.++++|.++. ++...+-+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344556788999999999888 2222 4556778889999999999999999999999998775 3666666677
Q ss_pred hcCC---------------hHHHHHHHHHHHhC
Q 004632 713 EEGN---------------WDEFGKVRSIMEVT 730 (741)
Q Consensus 713 ~~g~---------------~~~A~~~~~~~~~~ 730 (741)
+... ..+|...|+++.++
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 7665 67788888877664
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.031 Score=51.78 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=79.9
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---ChHHHHHHHHhC--CCCCCHHHH
Q 004632 597 KP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG---DIEGAFKMIHSM--PFPANGSIW 670 (741)
Q Consensus 597 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~ 670 (741)
.| |...|..|...|...|+++.|..-|....+.. .+++..+..+..++.... ...++..+|+++ ..+.+..+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45 55688888888888889998888888888732 245666777777665443 346788888888 455577777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
.-|...+...|++.+|...++.+++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 77888889999999999999999988887664
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.02 E-value=0.0011 Score=49.18 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC---chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 667 GSIWGALLNGCRIHKRIDVMKTIEKELSVT----GTND---NGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
..++..+...+...|++++|+..+++++++ ++++ ..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346777888888888888888888888754 2222 35688999999999999999999998754
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.00 E-value=0.38 Score=46.70 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHH
Q 004632 440 IDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGK 519 (741)
Q Consensus 440 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 519 (741)
+.-+...|+...|.++-.+..-|+...|-..+.+++..++|++-..+-.. +-++..|-.++.+|.+.|+..+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33334445555555555554445555555555555555555444332211 112234444444444444444444
Q ss_pred HHHH
Q 004632 520 WVHH 523 (741)
Q Consensus 520 ~~~~ 523 (741)
.+..
T Consensus 258 ~yI~ 261 (319)
T PF04840_consen 258 KYIP 261 (319)
T ss_pred HHHH
Confidence 4443
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.98 E-value=0.0096 Score=52.12 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=75.1
Q ss_pred HHHHhc--cCCCchHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 004632 454 LLFERI--QQKSVVMWNSMICGFYQ-----NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNI-------------- 512 (741)
Q Consensus 454 ~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------------- 512 (741)
..|+.. ...+..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34567778888888765 467788888899999999999999999999988652
Q ss_pred --ccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 004632 513 --GQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGD 549 (741)
Q Consensus 513 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 549 (741)
.+.+-|..++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345678899999999999999999988888876553
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.0091 Score=54.46 Aligned_cols=102 Identities=15% Similarity=-0.001 Sum_probs=74.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCChHHHHHHHHhC-----CCCCCHHHHHHHH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRIFGV--EPDLQHYACMVDLLSRSGDIEGAFKMIHSM-----PFPANGSIWGALL 674 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~l~ 674 (741)
.|+.-+. +.+.|++..|...|...++... .-....+-+|++++...|++++|...|..+ +.+.-++.+..++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 3456778888888888877321 223556777888888888888888888777 2344567778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 004632 675 NGCRIHKRIDVMKTIEKELSVTGTNDNGYY 704 (741)
Q Consensus 675 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 704 (741)
......|+.++|...|+++.+..|+.+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888888888888888888888888876543
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.89 E-value=0.038 Score=50.08 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=84.1
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--c
Q 004632 543 MYAKCGDLQTAQRVFDSMSE--RN----VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV--TFMNILWACS--H 612 (741)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~--~ 612 (741)
.+...|++++|...|+.+.. |+ ....-.++.++.+.|+++.|...++++++ ..|+.. .+...+.+.+ .
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHHH
Confidence 34455666666666665552 21 22344556666677777777777777666 334322 1222222111 1
Q ss_pred -----------cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004632 613 -----------SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHK 681 (741)
Q Consensus 613 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 681 (741)
.+...+|...|+.+++ -|=...-..+|...+..+.. .-...-..++..+.+.|
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~-~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRN-RLAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHCTT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcc
Confidence 1112233444444433 22222333333333333310 00111123556688999
Q ss_pred CHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHH
Q 004632 682 RIDVMKTIEKELSVTGTNDNG---YYTLLSNIYAEEGNWDEFG 721 (741)
Q Consensus 682 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 721 (741)
.+..|...++.+++..|+.+. ++..++.+|.+.|..+.|.
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999998764 5788889999999988554
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.76 Score=48.22 Aligned_cols=327 Identities=10% Similarity=0.035 Sum_probs=165.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC--hHHHHHHHHHHHHhcCCcchhHHHHHHHHHh
Q 004632 368 NMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGS--LQLGLQIHGHVIKIDCKDEFVQSSLIDMYSK 445 (741)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 445 (741)
..+++-+...+.+..|+++-..+...-..- ...|........+..+ -+.+.+.+..-+.....+...|..++.-...
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 345677777888888888877764321111 3444444443333221 2222222222222223333377788888888
Q ss_pred cCCHHHHHHHHHhccCC--------CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHh
Q 004632 446 CGFKNLAYLLFERIQQK--------SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEK 517 (741)
Q Consensus 446 ~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 517 (741)
+|+.+-|..+++.-+.. +..-+...+.-..+.|+.+-...++-.+..+- +...+... ..+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchh
Confidence 99999999888754332 22334455556666777777666665554321 11111111 122333
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCH----------
Q 004632 518 GKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSM------SERNVVSWSAMIDCYGMHGQL---------- 581 (741)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---------- 581 (741)
|..+|.+..+..-. ..+-+.|-...+...+-.+.-+- .++-..........+.+....
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44444433321100 01111222222222221111111 011111222223333333221
Q ss_pred HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHh
Q 004632 582 NDAASLFKQMLD-SGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHS 660 (741)
Q Consensus 582 ~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (741)
.+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-++.+ .||...|-.-+.++...++|++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 111222222221 1222333355555556667778888877766653 46777777777788888888887777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632 661 MPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 661 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
.+. +.-|.=...+|.+.|+..+|.+++-+...+ .....+|.+.|++.+|.+.--
T Consensus 741 kks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 643 333444667778888888888776554221 156677888888888876543
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.087 Score=47.37 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHH-----
Q 004632 466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTAL----- 540 (741)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 540 (741)
.-+.++..+.-.|.+.-...++++.++...+.++.....+.+.-.+.||.+.|...++...+..-..+...++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344556666667778888888888888766677777788888888888888888888877654333333333333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004632 541 TDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVT 602 (741)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 602 (741)
...|.-++++..|...+.++.. .|+..-|.-.-+..-.|+..+|++.++.|.+ ..|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 2345556778888888877764 3444555544455556788888888888887 4554443
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.81 E-value=0.0064 Score=53.20 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=70.7
Q ss_pred HHhhccC--CCCCccchHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcC-------------
Q 004632 49 RLVFDTF--KEPDSFMWAVLIKCYMW-----NNFFEESILLYHKMIREQATISNFIYPSVLRACSSL------------- 108 (741)
Q Consensus 49 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~------------- 108 (741)
...|+.. ...+-.+|..+++.+.+ .|+.+=....+..|.+.|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 34666777777777654 356666667788888888888888888888877542
Q ss_pred ---CChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCC
Q 004632 109 ---GDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGC 145 (741)
Q Consensus 109 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (741)
...+-+.+++++|...|+-||..++..++..+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345578888888888888888888888888877665
No 224
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.89 Score=47.77 Aligned_cols=97 Identities=9% Similarity=-0.062 Sum_probs=59.1
Q ss_pred CCCCCChhhHHH-----HHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcC---ChHHHHHHHHhcCC-
Q 004632 291 VKEEPNLITLIT-----VLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECG---KMSECEKVIHAIGE- 361 (741)
Q Consensus 291 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~- 361 (741)
-|++.+..-|.. +|+-+...+.+..|.++-..+...... . ..++...+..+.+.. +.+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-G-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-c-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 356555554443 445555667777777776555432221 2 566666666666653 23334444455555
Q ss_pred -CCcccHHHHHHHHHHcCCchHHHHHHHH
Q 004632 362 -RNILSWNMLISEYARKGMSKEALELLVQ 389 (741)
Q Consensus 362 -~~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (741)
....+|..........|+++.|..+++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 4566788888888888888888877764
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.76 E-value=0.41 Score=43.41 Aligned_cols=59 Identities=20% Similarity=0.144 Sum_probs=29.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcC
Q 004632 471 ICGFYQNGNSLEAINLFHQMYLNCL--EMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYG 529 (741)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (741)
...+...|++.+|...|+.+..... +--....-.++.++.+.|+++.|...++.+++.-
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344556666666666666654311 1112233345555566666666666666655543
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.75 E-value=0.078 Score=52.63 Aligned_cols=144 Identities=9% Similarity=-0.003 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 004632 580 QLNDAASLFKQMLD-SGIKPNEV-TFMNILWACSH---------SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS 648 (741)
Q Consensus 580 ~~~~A~~~~~~~~~-~~~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (741)
..+.|+.+|.+... ..+.|+.. .|..+..++.. ..+..+|.+..++..+.+ +-|+.....++.++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 35677888888881 12667643 44444333321 234556777777777755 34677777788877888
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh--HHHHHHHHhhcCChHHHHHHH
Q 004632 649 GDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY--YTLLSNIYAEEGNWDEFGKVR 724 (741)
Q Consensus 649 ~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~ 724 (741)
++++.|...|++. . .|.....|......+...|+.++|.+.++++.+++|....+ .......|+..+ .++|+.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 8899999999988 3 44566778888888888999999999999999999985544 333444566655 45555554
Q ss_pred H
Q 004632 725 S 725 (741)
Q Consensus 725 ~ 725 (741)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.01 Score=57.07 Aligned_cols=65 Identities=8% Similarity=-0.190 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 667 GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
..++.++..++.+.+++..|+..-.+.++++|+|.-+++.-+.+|...|+++.|...|+++++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34677888889999999999999999999999999999999999999999999999999998743
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.65 E-value=0.6 Score=43.83 Aligned_cols=192 Identities=13% Similarity=0.055 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 004632 537 DTALTDMYAKCGDLQTAQRVFDSMS-----ERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW-AC 610 (741)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-~~ 610 (741)
.......+...+++..+...+.... ......+......+...+++..+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 3334444444444444444444332 1223334444444444555555555555555422111 111111112 44
Q ss_pred hccCCHHHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCChHHHHHHHHhC-CC-CC-CHHHHHHHHHHHHhcCCHHH
Q 004632 611 SHSGSVEEGKFYFNAMRIFGV--EPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PF-PA-NGSIWGALLNGCRIHKRIDV 685 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~-~~~~~~~l~~~~~~~g~~~~ 685 (741)
...|+++.+...+.+...... ......+......+...++.++|...+.+. .. +. ....+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 555555555555555533110 011222222222334445555555555555 21 22 24445555555555555566
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 686 MKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 686 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+...+..+....|.....+..++..+...|+.+++...+++..+
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666555555555444444455455544555555555554433
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.59 E-value=0.04 Score=54.58 Aligned_cols=115 Identities=9% Similarity=0.048 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHH-cCCCCC-ccHHHHHHHHHHhc---------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 004632 615 SVEEGKFYFNAMRI-FGVEPD-LQHYACMVDLLSRS---------GDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK 681 (741)
Q Consensus 615 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 681 (741)
..+.|..+|.+... ....|+ ...|..+..++... ....+|.+..++. -.+.|+.+...++.+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45678888998884 334555 55566665555432 2344666666666 34567888888888888888
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 682 RIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 682 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+++.|...++++..++|+.+.+|...++++.-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999997554
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=1.4 Score=47.06 Aligned_cols=120 Identities=9% Similarity=0.011 Sum_probs=79.9
Q ss_pred hhHHHHHHHHccCChhhHHHhhccCCCCCccch---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhc
Q 004632 31 ASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMW---AVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSS 107 (741)
Q Consensus 31 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 107 (741)
...+-|+.+.+..-+..|..+-+.-..+....- .....-+.+.|++++|...|-+-+.. +.| ..++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 445667888888888888887776443322222 22233456788888888877775532 122 345666777
Q ss_pred CCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCC
Q 004632 108 LGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMT 157 (741)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (741)
..+..+....++.+.+.|+.. ..--..|+.+|.+.++.+...++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 777777788888888888543 3344567888888888888888777665
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.54 E-value=0.29 Score=38.98 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=84.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHH
Q 004632 575 YGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGA 654 (741)
Q Consensus 575 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 654 (741)
....|..++..++..+.... .+..-++.++--....-+-+-..+.++.+ |-..|.. .+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHH
Confidence 34568888888888887763 23334444443333333334444444443 3233322 23444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCc
Q 004632 655 FKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLK 733 (741)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 733 (741)
...+-.+. .........+..+..+|.-+.-.+++..+.+.+..+|.++.-++.+|.+.|+..+|.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444442 345566667888899999999999999988767778899999999999999999999999999999975
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.033 Score=43.94 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=45.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHH---HHHHHHHHHHhcCC
Q 004632 609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM---PFPANGS---IWGALLNGCRIHKR 682 (741)
Q Consensus 609 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~---~~~~l~~~~~~~g~ 682 (741)
++...|+.+.|++.|.+.+..- +-....||.-..++--.|+.++|++-+++. ..+.... .+..-...|+..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455566666666666555521 223445555555555556666665555554 1111111 22233333555556
Q ss_pred HHHHHHHHHHHhccCCC
Q 004632 683 IDVMKTIEKELSVTGTN 699 (741)
Q Consensus 683 ~~~a~~~~~~~~~~~p~ 699 (741)
.+.|..-|+.+.+++..
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 66666666555555544
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.03 Score=51.20 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHH
Q 004632 637 HYACMVDLLSRSGDIEGAFKMIHSM--PF---PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN---GYYTLLS 708 (741)
Q Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 708 (741)
.|+.-++. .+.|++.+|...|... +. .-.+..+..|+.++...|++++|...|..+.+..|+++ ..+.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57766654 4678899999999887 22 23455777899999999999999999999999887755 5689999
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCC
Q 004632 709 NIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 709 ~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
.+..+.|+.++|..+|+++.++-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999988543
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.49 E-value=0.034 Score=52.32 Aligned_cols=162 Identities=11% Similarity=0.055 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC---C--CccH
Q 004632 567 SWSAMIDCYGMHGQLNDAASLFKQMLDS-GIKPNE---VTFMNILWACSHSGSVEEGKFYFNAMRIFGVE---P--DLQH 637 (741)
Q Consensus 567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~ 637 (741)
.|..+.+++-+.-++.+++.+-+.-... |..|.. ....++..++...+.++++++.|+.+.+.... | ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445554444555555554443331 222211 12233445666666777777777777662111 1 1345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CC
Q 004632 638 YACMVDLLSRSGDIEGAFKMIHSM-------PFPAN-----GSIWGALLNGCRIHKRIDVMKTIEKELSVTG------TN 699 (741)
Q Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~ 699 (741)
+-.|...|.+..++++|.-+..++ +...- ......+.-+++..|..-.|.+.-+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777665555444 21111 1233445556777777777777766665432 11
Q ss_pred CchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 700 DNGYYTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 700 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
.......++++|-..|+.+.|..-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22345566777777777777777776643
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=96.45 E-value=0.04 Score=46.27 Aligned_cols=88 Identities=6% Similarity=0.015 Sum_probs=59.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 004632 607 LWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRID 684 (741)
Q Consensus 607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 684 (741)
..-+...|++++|..+|+-+...++ .+..-+..|+.++...+++++|+..+... -.+.|+......+.++...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3344567788888888877766442 24445566777777777888888777766 12345555666777777788888
Q ss_pred HHHHHHHHHhc
Q 004632 685 VMKTIEKELSV 695 (741)
Q Consensus 685 ~a~~~~~~~~~ 695 (741)
.|+..|+.+.+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888877776
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.33 Score=43.41 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=21.2
Q ss_pred HHhcCCHHHHHHHHHHHhc----cCCCCchhHHHHHHHHhhcCChHHHHHH
Q 004632 677 CRIHKRIDVMKTIEKELSV----TGTNDNGYYTLLSNIYAEEGNWDEFGKV 723 (741)
Q Consensus 677 ~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 723 (741)
+.-..|+..|+.+++..-+ ..|++..+...|... +..||.+++.++
T Consensus 200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kv 249 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKV 249 (308)
T ss_pred HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHH
Confidence 3344455555555555332 223444445555432 344555554443
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.39 E-value=0.0043 Score=45.97 Aligned_cols=27 Identities=4% Similarity=-0.248 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
++..++.++...|++++|++.++++.+
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555556666666666555543
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.24 E-value=0.038 Score=47.09 Aligned_cols=71 Identities=20% Similarity=0.358 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCccHHH
Q 004632 567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRI-----FGVEPDLQHYA 639 (741)
Q Consensus 567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 639 (741)
+...++..+...|++++|..+++++.. ..| |...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 445566667778888888888888887 556 455788888888888888888888877754 57777765543
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.28 Score=45.47 Aligned_cols=164 Identities=14% Similarity=0.096 Sum_probs=76.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 004632 552 TAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIFG 630 (741)
Q Consensus 552 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 630 (741)
...+++++...+....--.-.......|+..+|...|+.... ..|+ ......+..+|...|+.+.|..++..+-...
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 444455554443222122222334455666666666666655 2332 2344445556666666666666655442211
Q ss_pred CCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCchhHHHH
Q 004632 631 VEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG--TNDNGYYTLL 707 (741)
Q Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 707 (741)
-.........-+..+.+.....+...+-.+. ..|.|...-..+...+...|+.++|.+.+-.+++.+ -++...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 0111111122233444444444444444444 223345555555555555666666655555554432 3344555555
Q ss_pred HHHHhhcCCh
Q 004632 708 SNIYAEEGNW 717 (741)
Q Consensus 708 ~~~~~~~g~~ 717 (741)
..++.-.|..
T Consensus 279 le~f~~~g~~ 288 (304)
T COG3118 279 LELFEAFGPA 288 (304)
T ss_pred HHHHHhcCCC
Confidence 5555555533
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.18 E-value=0.98 Score=41.23 Aligned_cols=58 Identities=14% Similarity=0.010 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 672 ALLNGCRIHKRIDVMKTIEKELSVTGTNDNG---YYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.++..+.+.|.+..|..-++.+++..|+.+. .+..+..+|.+.|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3455678899999999999999988777554 467777889999999999887665544
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.52 Score=43.79 Aligned_cols=120 Identities=9% Similarity=0.016 Sum_probs=81.5
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 004632 609 ACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGA---LLNGCRIHKRIDV 685 (741)
Q Consensus 609 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~ 685 (741)
.....|++.+|...|+....... -+......++++|...|+.+.|..++..++.......+.. -+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 45677888888888888887432 2355666788888899999999999988854443333333 2333334333333
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 686 MKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 686 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
... +++-...+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 23334678888888888888999999999988877666553
No 242
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.17 E-value=1.9 Score=44.40 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004632 534 IYIDTALTDMYAKCGDLQTAQRVFDSMSERN---VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWAC 610 (741)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 610 (741)
..+|...++--.+.|+.+.+.-+|+...-|- ...|-..+.-....|+.+-|..++....+-.++-.+.+-..-...+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 4556666666777888888888888777542 2345445554455588888888777776643222222222222234
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHH----HHHHHHH-HHhc
Q 004632 611 SHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAF---KMIHSM-PFPANGSI----WGALLNG-CRIH 680 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~---~~~~~~-~~~~~~~~----~~~l~~~-~~~~ 680 (741)
...|+++.|..+++.+.+.- |+ ...-..-+....+.|+.+.+. +++... ...-+... +....+. +.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 56678999999998888742 33 222223344556778888777 444444 22222222 2222332 3446
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632 681 KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG 715 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 715 (741)
++.+.|..++.++.+..|++...|..+.......+
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 78888999999999999988888888877766554
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.15 E-value=0.95 Score=44.50 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC-------CchHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004632 438 SLIDMYSKCGFKNLAYLLFERIQQK-------SVVMWNSMICGFYQ---NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQ 507 (741)
Q Consensus 438 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 507 (741)
.++-.|....+++..+++.+.+... ....-.....++.+ .|+.++|++++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334455666666666666665543 11122233344455 6777777777777555555666667666655
Q ss_pred HH
Q 004632 508 AC 509 (741)
Q Consensus 508 ~~ 509 (741)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.13 E-value=0.33 Score=46.01 Aligned_cols=124 Identities=11% Similarity=0.114 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC-CH-H---
Q 004632 538 TALTDMYAKCGDLQTAQRVFDSMSE-------R--NVVSWSAMIDCYGMHGQLNDAASLFKQMLDS--GIKP-NE-V--- 601 (741)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p-~~-~--- 601 (741)
..+..++...+.++++++.|+...+ | ....+..|...|.+.+|+++|.-+..++.+. .+.. |. .
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3455556666667777777765542 1 2346777777788888888887776665541 1111 11 1
Q ss_pred --HHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 602 --TFMNILWACSHSGSVEEGKFYFNAMRI----FGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 602 --~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
+...+.-++-..|+..+|.+..++..+ .|-.+. ......+.++|-..|+.|.|+.-++.+
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223344467777888888888887766 332221 334556778888888888887777665
No 245
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.94 E-value=0.032 Score=47.75 Aligned_cols=125 Identities=8% Similarity=-0.031 Sum_probs=76.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 004632 607 LWACSHSGSVEEGKFYFNAMRIFGVEPD----LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIH 680 (741)
Q Consensus 607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 680 (741)
..-+...|++++|.+-|.+++..-.... ...|..-+.++.+.+.++.|++-..+. ...| ....+..-..+|-+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3456778888888888888887422111 234555556677778888887777666 3333 333444445556677
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHH--HHHHHHHhCC
Q 004632 681 KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFG--KVRSIMEVTG 731 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~~ 731 (741)
..+++|++-|+++++.+|....+-...+.+--......+++ ++..++++.|
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888888888876665555554444444444333 3455555543
No 246
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=1 Score=40.09 Aligned_cols=21 Identities=0% Similarity=-0.254 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 004632 681 KRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~~ 701 (741)
.|.-.+...+++-.+++|.-.
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccc
Confidence 444555555555555555544
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.69 E-value=0.39 Score=47.97 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCCchhHHHH
Q 004632 639 ACMVDLLSRSGDIEGAFKMIHSM-P-FPA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVT-GTNDNGYYTLL 707 (741)
Q Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l 707 (741)
..+..++.+.|+.++|++.++++ + +++ ...+...|+.++...+.+.++..++.+--+. -|+++.+.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 34666667777778887777777 2 222 2335667777777777777777777776544 35555544443
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.63 E-value=0.67 Score=48.19 Aligned_cols=159 Identities=12% Similarity=0.050 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHHHHcCCCCCccHH
Q 004632 569 SAMIDCYGMHGQLNDAASLFKQMLDSG-IKPNE-----VTFMNILWACS----HSGSVEEGKFYFNAMRIFGVEPDLQHY 638 (741)
Q Consensus 569 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~-----~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 638 (741)
..++....-.||-+.+++.+.+..+.+ +.-.. -.|...+..++ .....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344444455566666666666655421 11111 12333333222 245677788888888763 3454443
Q ss_pred H-HHHHHHHhcCChHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH-HHHHH
Q 004632 639 A-CMVDLLSRSGDIEGAFKMIHSMP------FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYT-LLSNI 710 (741)
Q Consensus 639 ~-~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~ 710 (741)
. .-++.+...|+.++|++.++++- .+-....+..+++.+.-..++++|...+.++.+.+.-+..+|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 34556677888888888888751 1122345566777788889999999999998887766555544 44555
Q ss_pred HhhcCCh-------HHHHHHHHHHHh
Q 004632 711 YAEEGNW-------DEFGKVRSIMEV 729 (741)
Q Consensus 711 ~~~~g~~-------~~A~~~~~~~~~ 729 (741)
|...|+. ++|.+++.+..+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6677888 888888887655
No 249
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.62 E-value=0.49 Score=47.15 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004632 565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV----TFMNILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 565 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
...|+.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|+..++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555556666666666666666555 455432 355555556666666666666665555
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=1.2 Score=37.61 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=82.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHH-----HHHHHhc
Q 004632 575 YGMHGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACM-----VDLLSRS 648 (741)
Q Consensus 575 ~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~ 648 (741)
+++.+..++|+..|..+.+.|...=+. ............|+...|+..|+++-.....|- ....+ .-.+...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~--~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ--IGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc--hhhHHHHHHHHHHHhcc
Confidence 356778888999999888876442221 222333356788999999999999876332232 22222 2345678
Q ss_pred CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 649 GDIEGAFKMIHSM---PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 649 ~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
|.+++....++-+ +.+-....-..|.-+..+.|++..|.+.|+++..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8999988888888 3334455667888888999999999999998876
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.63 Score=43.72 Aligned_cols=160 Identities=13% Similarity=-0.045 Sum_probs=108.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccH----HHHHHHHHHhcCCh
Q 004632 576 GMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQH----YACMVDLLSRSGDI 651 (741)
Q Consensus 576 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~ 651 (741)
.-+|+..+|...++++.+. .+.|...+...=.+|...|+...-...++++... -.+|... -..+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467777888888888874 3446667777777888889988888888888762 1234332 23445566788999
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----chhHHHHHHHHhhcCChHHHHHHHH
Q 004632 652 EGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTND----NGYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 652 ~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
++|.+.-++. . .+.|.-...+....+...|+..++.++..+-...=.++ ..-|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988888 3 34456666777777888889988888877654322111 1124445556777889999999998
Q ss_pred HHHhCCCccCCC
Q 004632 726 IMEVTGLKKVPG 737 (741)
Q Consensus 726 ~~~~~~~~~~~~ 737 (741)
+=+-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 754444444443
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.43 E-value=0.086 Score=41.69 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=77.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----hhHHHHHHHHhhc
Q 004632 641 MVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN----GYYTLLSNIYAEE 714 (741)
Q Consensus 641 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~ 714 (741)
-.-++...|+.+.|++.|.+. -.|..+..|++-..+++-+|+.++|+.-+++++++.-+.. ..|..-+.+|-..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 345677899999999999888 3566889999999999999999999999999998754433 3578888899999
Q ss_pred CChHHHHHHHHHHHhCC
Q 004632 715 GNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 715 g~~~~A~~~~~~~~~~~ 731 (741)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999988766
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.37 E-value=3.2 Score=41.04 Aligned_cols=124 Identities=16% Similarity=0.258 Sum_probs=96.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 004632 534 IYIDTALTDMYAKCGDLQTAQRVFDSMSE-----RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTF-MNIL 607 (741)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~ll 607 (741)
..+|...++...+...++.|+.+|-++.+ +++..+++++..++ .|++..|..+|+--.. ..||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 45677888888888899999999998874 67888999998776 5788899999998776 45666544 3455
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 608 WACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 608 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
..+...++-..|..+|+..... +..+ ..+|..+++.-..-|+...+..+=+++
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 6677889999999999966552 1222 568888888888889998888887777
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.37 E-value=0.51 Score=38.87 Aligned_cols=117 Identities=14% Similarity=0.015 Sum_probs=68.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 004632 571 MIDCYGMHGQLNDAASLFKQMLDSGIKP--NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS 648 (741)
Q Consensus 571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (741)
-.....+.|++++|.+.|+.+...-..+ ....-..++.+|.+.+++++|...+++.++.++.....-|.....+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3344556788888888888887742111 12355566778888888888888888888744332333444455554443
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 649 GDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
...+..+.-+- ... ...+....|..-|++++...|++.-
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 33222221111 111 1223356888889999999998763
No 255
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.36 E-value=0.041 Score=32.52 Aligned_cols=31 Identities=10% Similarity=-0.066 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
.+..++..+...|++++|++.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555555554
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.31 E-value=0.39 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=15.0
Q ss_pred HHHHHHHhccccHHhHHHHHHHHHH
Q 004632 503 LTAIQACSNIGQLEKGKWVHHKLIS 527 (741)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (741)
..++....-.||.+.+.+.+....+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 3445555556777777776666544
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.17 E-value=2.8 Score=39.15 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhccccHHhHHHHHHHHHHc-CCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCH-HHHHHHHH-H
Q 004632 500 VTFLTAIQACSNIGQLEKGKWVHHKLISY-GVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--RNV-VSWSAMID-C 574 (741)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 574 (741)
..+......+...+....+...+...... ........+......+...++...+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444555555555555555544332 2223334444455555566666677777666653 221 22222223 6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 004632 575 YGMHGQLNDAASLFKQMLDSGIKP----NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD 650 (741)
Q Consensus 575 ~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (741)
+...|+++.|...+++... ..| ....+......+...++++.+...+..............+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 7788899999999988866 444 2234444444567788999999999988874321135677778888888889
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 651 IEGAFKMIHSM-PFPAN-GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 651 ~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
+++|...+... ...|+ ...+......+...++.+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999888 33343 455566666656777899999999999998887
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.16 E-value=1.7 Score=36.59 Aligned_cols=126 Identities=7% Similarity=0.026 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632 568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR 647 (741)
Q Consensus 568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (741)
...++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456666666778888888888888765 345567777888777653 3444444442 1234445557778888
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632 648 SGDIEGAFKMIHSMPFPANGSIWGALLNGCRIH-KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA 712 (741)
Q Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 712 (741)
.+-++++..++.+++. +...+..+... ++++.|.++.++ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 8888888888888753 12223333334 788888888776 345667777776554
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.53 Score=44.22 Aligned_cols=155 Identities=7% Similarity=-0.015 Sum_probs=114.5
Q ss_pred HhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHhccCCHH
Q 004632 545 AKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNI----LWACSHSGSVE 617 (741)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l----l~~~~~~~~~~ 617 (741)
.-.|++.+|...++++.+ .|..++..--.+|...|+.+.-...+++.... ..||.+.|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346777788778888774 47778888888999999999999999998864 57777554433 23567889999
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004632 618 EGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN------GSIWGALLNGCRIHKRIDVMKTIEK 691 (741)
Q Consensus 618 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (741)
+|++.-++..+.+ +.|...-.++...+...|+..++.++..+-...-+ ...|-...-.+.+.+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999998854 45677777888889999999999999988732111 1123344445667799999999998
Q ss_pred HHh--ccCCCCc
Q 004632 692 ELS--VTGTNDN 701 (741)
Q Consensus 692 ~~~--~~~p~~~ 701 (741)
+-+ ++..+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654 3444444
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.15 E-value=0.037 Score=32.73 Aligned_cols=31 Identities=6% Similarity=-0.152 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
+|..++.++...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555566666666666666666666654
No 261
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.12 E-value=0.3 Score=39.78 Aligned_cols=50 Identities=6% Similarity=0.161 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHH
Q 004632 596 IKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLL 645 (741)
Q Consensus 596 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 645 (741)
+.|+..+...++.+|+..|++..|.++.+...+ .+++.+...|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455666666666666666777777776666666 55555566666665543
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.11 E-value=4.8 Score=41.61 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=71.4
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHH
Q 004632 61 FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNF-IYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCT 139 (741)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (741)
..|..+|.---.....+.+...+..++.. .|.-. -|.....-=.+.|..+.+..+|++-.. |++.+...|...+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 44555555444444444555555555533 22221 222333333455677777777777664 445555566555544
Q ss_pred hH-hcCChhHHHHHHccCCC------CCceeHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 004632 140 YG-EFGCLDDARKVFDKMTS------RDVVSWSSIIASYFDNADVSEGLKMFHSMVRE 190 (741)
Q Consensus 140 ~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 190 (741)
+. ..|+.+.....|+.... .+...|...|..-...+++.....+++..++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 33 34666666666665543 23446777777777777888888888777653
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=2.5 Score=38.07 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=10.4
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 004632 470 MICGFYQNGNSLEAINLFHQ 489 (741)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~ 489 (741)
-...|...|.++-|-..+++
T Consensus 97 As~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHhCCcchHHHHHHH
Confidence 34455555555555544444
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.91 E-value=2 Score=43.30 Aligned_cols=102 Identities=8% Similarity=-0.062 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHH--HHHHHHH
Q 004632 601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSMPF--PANGS--IWGALLN 675 (741)
Q Consensus 601 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~--~~~~l~~ 675 (741)
.+-..+..++.+.|+.++|++.+++|.+..... ...+...|+.++...+.+.++..++.+... -|... +|...+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 344456667788999999999999998743222 244677899999999999999999998831 23333 3333332
Q ss_pred HHHhcCC---------------HHHHHHHHHHHhccCCCCch
Q 004632 676 GCRIHKR---------------IDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 676 ~~~~~g~---------------~~~a~~~~~~~~~~~p~~~~ 702 (741)
-.+..++ -..|.+.+.++.+.+|.-+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 2222232 12466788888888877553
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=7.1 Score=42.08 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 004632 235 NSFIVMYSKCGDLLSAERTFVKIEKRCTT---SWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLG 311 (741)
Q Consensus 235 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 311 (741)
..-++.+++..-++-|..+-+.-..+... ........+.+.|++++|...|-+-+.. +.| ..++.-+....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 44555666666666676665544332111 3444456677889999999888765432 222 23455555556
Q ss_pred ChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcC
Q 004632 312 WLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIG 360 (741)
Q Consensus 312 ~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 360 (741)
....-..+++.+.+.|+. +..-...|+.+|.+.++.++-.+..+...
T Consensus 412 ~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 666667778888888864 33344567777777777777666666555
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.75 E-value=0.06 Score=32.34 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 703 YYTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 703 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
++..|+.+|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999855
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.72 E-value=0.93 Score=46.37 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=100.7
Q ss_pred HHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 004632 473 GFYQNGNSLEAINLFHQMY-LNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQ 551 (741)
Q Consensus 473 ~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 551 (741)
...-.++++++.++...-. -..+ | ..-...++.-+.+.|..+.|.++...- ..-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHH
Confidence 3445677777666654111 1111 1 334566677777778777777664322 12345667889999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 004632 552 TAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGV 631 (741)
Q Consensus 552 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 631 (741)
.|.++.++.. +...|..|.......|+++-|++.|++..+ +..|+-.|...|+.+...++.+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9988877665 666899999999999999999998887544 44566667778888888888877776552
Q ss_pred CCCccHHHHHHHHHHhcCChHHHHHHHHhCC
Q 004632 632 EPDLQHYACMVDLLSRSGDIEGAFKMIHSMP 662 (741)
Q Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (741)
++....++.-.|+.++..+++.+.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4555566667788888888887775
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=1 Score=38.00 Aligned_cols=129 Identities=11% Similarity=0.012 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH-----HH
Q 004632 601 VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDL-QHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWG-----AL 673 (741)
Q Consensus 601 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~-----~l 673 (741)
..|...+. +.+.+..++|+.-|..+.+.|...-+ -............|+...|...|.++ ...|.+.... .-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 35668889999999999985543221 11223445667889999999999999 3333333332 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 674 LNGCRIHKRIDVMKTIEKELSV-TGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
...+..+|.++......+-+.. .+|-....-..|+-+-++.|++.+|...|+.+...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 3346789999998888776653 34545567888999999999999999999998763
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.52 E-value=0.37 Score=43.99 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=75.8
Q ss_pred HHHHHhcc--CCCchHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc------------
Q 004632 453 YLLFERIQ--QKSVVMWNSMICGFYQN-----GNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG------------ 513 (741)
Q Consensus 453 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 513 (741)
+..|.... ++|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.++..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 33444444 34666777777766543 566677777889999999999999999998886533
Q ss_pred ----cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 004632 514 ----QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDL 550 (741)
Q Consensus 514 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 550 (741)
+-.-+..++++|..+|+.||..+-..+++++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999999987754
No 270
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.49 E-value=8.9 Score=41.74 Aligned_cols=126 Identities=10% Similarity=0.125 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHH
Q 004632 577 MHGQLNDAASLFKQMLDSG-IKPNEV--TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEG 653 (741)
Q Consensus 577 ~~~~~~~A~~~~~~~~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 653 (741)
...+.+.|...+....... +.+... ....+.......+...++...++..... ..+......-+....+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 3456788888888775432 333222 3333333333332255666666654332 2355556666666668888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 004632 654 AFKMIHSMP--FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLS 708 (741)
Q Consensus 654 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 708 (741)
+...+..|+ ......-..-+++++...|+.++|...|+++.. + ..+|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 888888883 223444556677776778888888888888743 2 23666665
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.46 E-value=6.1 Score=39.73 Aligned_cols=150 Identities=10% Similarity=-0.010 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccH
Q 004632 563 RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP---NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQH 637 (741)
Q Consensus 563 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 637 (741)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-+......|+..+|+..++...+..+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888888888888888888887743221 223344445566777888888888888776222222 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 004632 638 YACMVDLLSRSGDIEGAFKM-IHSMPFPANGSIWGALLNGCRIH------KRIDVMKTIEKELSVTGTNDNGYYTLLSNI 710 (741)
Q Consensus 638 ~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 710 (741)
...+...+.. ..+..... ...........++..++..+... +..+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000001122334444444444 788999999999999999998888888887
Q ss_pred Hhhc
Q 004632 711 YAEE 714 (741)
Q Consensus 711 ~~~~ 714 (741)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7654
No 272
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.37 E-value=1 Score=36.75 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 004632 498 DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSM--SERNVVSWSAMIDCY 575 (741)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~ 575 (741)
|..++..++.++++.|+.+....+.+.. .|+.++... ..+. +..- .-|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 4566777788888888877777766544 233322110 0000 1111 138899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 004632 576 GMHGQLNDAASLFKQMLDS-GIKPNEVTFMNILW 608 (741)
Q Consensus 576 ~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~ 608 (741)
+..|++..|+++++...+. ++.-+...|..|+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999998864 44446678888888
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=1.7 Score=37.79 Aligned_cols=114 Identities=4% Similarity=-0.040 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHH-----HHHHHHHHhcCChHHHH
Q 004632 583 DAASLFKQMLDSGIKPNEVTFM--NILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHY-----ACMVDLLSRSGDIEGAF 655 (741)
Q Consensus 583 ~A~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~ 655 (741)
+.....+++....-......+. .+...+...|++++|+..++..+.. |....+ -.|.+.....|.+|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4555556666532111222222 3344678888999998888877652 222222 24566777888999999
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 656 KMIHSMPFP-ANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 656 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
..++....+ -.+.....-+..+...|+.++|...|+++++..+.
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 999887422 23333455567788889999999999998887744
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.07 E-value=0.86 Score=39.47 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=58.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHH
Q 004632 572 IDCYGMHGQLNDAASLFKQMLDSGIKPNE------VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDL 644 (741)
Q Consensus 572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 644 (741)
..-+...|++++|..-|.++++ ..|.. ..|..-..++.+.+.++.|+.-..+.++.+ |+ ...+..-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHH
Confidence 3446778888888888888887 34432 234444556777888888888887777644 22 2223333456
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC
Q 004632 645 LSRSGDIEGAFKMIHSM-PFPAN 666 (741)
Q Consensus 645 ~~~~~~~~~A~~~~~~~-~~~~~ 666 (741)
|.+..++++|++-|+++ ...|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 77777888888888777 33343
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.96 E-value=0.31 Score=45.61 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 668 SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.++..++..+...|+.+.+.+.++++...+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556677777788888888888888888888888888888888888888888888888766
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.54 E-value=0.43 Score=39.28 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 680 HKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 680 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.++.+++..+++.+.-+.|+.+..-..-++.+...|+|.+|..+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 44455555555555555555554444445555555555555555554444
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.51 E-value=0.43 Score=43.61 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=78.6
Q ss_pred HHhhccCC--CCCccchHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCC------------
Q 004632 49 RLVFDTFK--EPDSFMWAVLIKCYMW-----NNFFEESILLYHKMIREQATISNFIYPSVLRACSSLG------------ 109 (741)
Q Consensus 49 ~~~~~~~~--~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 109 (741)
+..|..++ +.+-.+|-..+..+.. .++.+=....++.|.+.|+.-|..+|..|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455444 3455566666665543 3455666677889999999999999999998886543
Q ss_pred ----ChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCCh-hHHHHHHccCC
Q 004632 110 ----DLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCL-DDARKVFDKMT 157 (741)
Q Consensus 110 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 157 (741)
..+-+..++++|..+|+-||-.+-..|+.++.+.+.. ....++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2334788999999999999999999999999888764 44555554454
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.46 E-value=0.16 Score=32.27 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=27.9
Q ss_pred chhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632 701 NGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 701 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
+..+..++.+|.+.|++++|.+.|+++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999887543
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.36 E-value=0.15 Score=30.04 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 702 GYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.++..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999988763
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.22 E-value=0.59 Score=39.30 Aligned_cols=73 Identities=14% Similarity=-0.064 Sum_probs=49.3
Q ss_pred HhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChH
Q 004632 646 SRSGDIEGAFKMIHSM-PFPANGSIW-GALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWD 718 (741)
Q Consensus 646 ~~~~~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 718 (741)
.+.++.+++..++..+ -..|..... ..-++.+...|++.+|..+++.+.+..|..+..--.++.++...||.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 4667778888887777 234443333 223444677888888888888887777777777777777777766643
No 281
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.09 E-value=2.8 Score=42.95 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChH
Q 004632 402 VASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSL 481 (741)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 481 (741)
...++..+.+.|..+.|.++-..- ..-.....++|+++.|.++.+++. ++..|..|.....+.|+++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~-----------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP-----------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H-----------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh-----------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 444555555555555555543221 222344556677777766654443 4557777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 004632 482 EAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDS 559 (741)
Q Consensus 482 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (741)
-|.+.|++... +..++-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777766432 34445555556666665555555554441 33444444555666666555544
No 282
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.01 E-value=29 Score=42.74 Aligned_cols=282 Identities=10% Similarity=-0.010 Sum_probs=148.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh-ccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 004632 435 VQSSLIDMYSKCGFKNLAYLLFER-IQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIG 513 (741)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 513 (741)
.+..+...|..-+++|...-+... ...+ ..++ -+......|+++.|...|+.+.+.+ ++...+++.++......|
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--sl~~-qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADP--SLYQ-QILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCc--cHHH-HHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 344444577777777776666553 2222 2222 2334556788888888888887753 333667777777777777
Q ss_pred cHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHH--HHHHHhc--CCHHHHHHHHH
Q 004632 514 QLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAM--IDCYGMH--GQLNDAASLFK 589 (741)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~A~~~~~ 589 (741)
.++...-..+-......+-....++.-+.+--+.++++....... ..+..+|... +....+. .|.-.-.+..+
T Consensus 1498 ~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~ 1574 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIE 1574 (2382)
T ss_pred chhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHH
Confidence 777766655444332222112222333344456677776666655 2333344433 2222222 22222223333
Q ss_pred HHHHcCCCCC-------H--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHH---HHHHHHhcCChHHHHHH
Q 004632 590 QMLDSGIKPN-------E--VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYAC---MVDLLSRSGDIEGAFKM 657 (741)
Q Consensus 590 ~~~~~~~~p~-------~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~ 657 (741)
.+.+.-+.|- . ..|..++..+.-. +-....+.. .++.++..+.+. ...-+.+.+..-.+.+-
T Consensus 1575 ~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ep 1648 (2382)
T KOG0890|consen 1575 NSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEP 1648 (2382)
T ss_pred HHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhH
Confidence 3333212220 0 1233333322111 111111111 223333221110 11112222322223222
Q ss_pred ---HHhC------C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632 658 ---IHSM------P---FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 658 ---~~~~------~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
+++. . ...-..+|....+.++..|.++.|...+-++.+..+ +.++...+..+++.|+...|+.+++
T Consensus 1649 ILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1649 ILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred HHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHH
Confidence 2222 1 123456889999999999999999999988888774 5578899999999999999999999
Q ss_pred HHHhCC
Q 004632 726 IMEVTG 731 (741)
Q Consensus 726 ~~~~~~ 731 (741)
+..+..
T Consensus 1727 ~~l~~~ 1732 (2382)
T KOG0890|consen 1727 EILSKN 1732 (2382)
T ss_pred HHHHhh
Confidence 887643
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.96 E-value=9 Score=36.80 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=12.3
Q ss_pred HHHHhhcCChHHHHHHHHH
Q 004632 708 SNIYAEEGNWDEFGKVRSI 726 (741)
Q Consensus 708 ~~~~~~~g~~~~A~~~~~~ 726 (741)
+..+++.++|++|.+.|+-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 3446667777777777763
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.95 E-value=3.1 Score=40.04 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHH
Q 004632 581 LNDAASLFKQMLDSGIKPNEV--TFMNILWACSHSGS--VEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFK 656 (741)
Q Consensus 581 ~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (741)
.+.++.+|+.+.+.|+..+.. ....++..+..... ..++.++++.+.+.|+++....|..++-...-.+..++...
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~ 238 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVE 238 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHH
Confidence 356777888888888877543 33344433322222 45788999999999998888888877654444443324433
Q ss_pred HH
Q 004632 657 MI 658 (741)
Q Consensus 657 ~~ 658 (741)
-+
T Consensus 239 ~i 240 (297)
T PF13170_consen 239 EI 240 (297)
T ss_pred HH
Confidence 33
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.92 E-value=5 Score=40.33 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 664 PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN----DNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 664 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.....+|..++..++++|.++.|...+.++...++. .+.+...-++.++..|+..+|+..++...+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345668888999999999999999999999886632 4567777889999999999999999988773
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.89 E-value=20 Score=40.61 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=27.2
Q ss_pred CCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 004632 245 GDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSC 307 (741)
Q Consensus 245 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 307 (741)
++++.|+.-+.++. ...|.-.+..--+.|.+.+|+.++ +|+...+..+..+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~y 945 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAY 945 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHH
Confidence 34555555444443 223444444445566677776654 45666665555444
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.86 E-value=7.6 Score=35.70 Aligned_cols=73 Identities=16% Similarity=0.012 Sum_probs=45.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 004632 473 GFYQNGNSLEAINLFHQMYLNC--LEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA 545 (741)
Q Consensus 473 ~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 545 (741)
.-.+.|++++|...|+.+..+. -+-...+...++.++.+.++++.|....++....-+.....-|...+.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3446778888888888777542 122344555666677777777777777777766544444444544454444
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.80 E-value=0.26 Score=46.26 Aligned_cols=97 Identities=6% Similarity=-0.141 Sum_probs=70.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 004632 605 NILWACSHSGSVEEGKFYFNAMRIFGVEP-DLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHK 681 (741)
Q Consensus 605 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g 681 (741)
.-..-|.++|.+++|+..|...... .| ++.++..-..+|.+.+++..|..-.+.+ . ...-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3455788999999999999887763 34 6777777778888888888777666655 1 1112334555555566778
Q ss_pred CHHHHHHHHHHHhccCCCCchh
Q 004632 682 RIDVMKTIEKELSVTGTNDNGY 703 (741)
Q Consensus 682 ~~~~a~~~~~~~~~~~p~~~~~ 703 (741)
...+|.+-++.++++.|++...
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH
Confidence 8899999999999999986543
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.68 E-value=22 Score=40.41 Aligned_cols=141 Identities=14% Similarity=0.043 Sum_probs=76.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 004632 536 IDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGS 615 (741)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 615 (741)
.|.-.++..-+.|-+.+|..++..-.+.--..|.+....+...+.+++|.-+|+..-+ ..-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 4444555555666666666665433322233455555555666777777666665432 1134556777788
Q ss_pred HHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004632 616 VEEGKFYFNAMRIFGVEPDL--QHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKEL 693 (741)
Q Consensus 616 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 693 (741)
|.+|..+..++.. .-+. .+-..|+.-+...++.-+|-+++.+....|.. .+..+++...+++|..+....
T Consensus 981 Wr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 981 WREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 8888777776532 1121 11245666677777777777777766333321 222344445555555554443
No 290
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.57 E-value=5.6 Score=33.38 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=26.6
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhccc
Q 004632 163 SWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGEL 209 (741)
Q Consensus 163 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 209 (741)
....++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34455666666666666666666666554 24455555555555543
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.52 E-value=8.4 Score=35.32 Aligned_cols=219 Identities=16% Similarity=0.183 Sum_probs=110.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH---CC--CCCCHHHHHHHHHHHhccccHHhHHHHHHHHH----Hc-CCCCCchhHH
Q 004632 469 SMICGFYQNGNSLEAINLFHQMYL---NC--LEMDEVTFLTAIQACSNIGQLEKGKWVHHKLI----SY-GVRKDIYIDT 538 (741)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~m~~---~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~~~~ 538 (741)
.++..+.+.|++++.++.|.++.. .. -.-+..+.+.++...+...+.+--.++++.-. +. +-..--.+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 344445555555555555554431 10 11233445555555555555444444443221 11 1111122333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHH
Q 004632 539 ALTDMYAKCGDLQTAQRVFDSMSE--------R-------NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSG-IKPNEVT 602 (741)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~ 602 (741)
-+...|...|.+.+..++++++.+ . -...|..-|..|...++-..-..+|++...-. .-|-+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 466667777777777777776652 1 12356667778888888777777888766421 2233333
Q ss_pred HHHHHHH-----HhccCCHHHHHHHHHHHHH----cCCCCC---ccHHHHHHHHHHhcCC----hHHHHHHHHhCCCCCC
Q 004632 603 FMNILWA-----CSHSGSVEEGKFYFNAMRI----FGVEPD---LQHYACMVDLLSRSGD----IEGAFKMIHSMPFPAN 666 (741)
Q Consensus 603 ~~~ll~~-----~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~ 666 (741)
...++- +.+.|+|++|..-|-++.+ .| .|. .--|..|.+.+.+.|- -.+|. -.+..|.
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPE 303 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPE 303 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHH
Confidence 333443 3567888887654444433 33 222 2235566677776662 11111 1134455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004632 667 GSIWGALLNGCRIHKRIDVMKTIEKELS 694 (741)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 694 (741)
......++.+|. .++..+.+.+++.-.
T Consensus 304 IlAMTnlv~aYQ-~NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 304 ILAMTNLVAAYQ-NNDIIEFERILKSNR 330 (440)
T ss_pred HHHHHHHHHHHh-cccHHHHHHHHHhhh
Confidence 556666776654 455555555554433
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.49 E-value=0.22 Score=29.27 Aligned_cols=29 Identities=3% Similarity=-0.233 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632 670 WGALLNGCRIHKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 698 (741)
|..++..+...|++++|...++++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444444445555555555555554444
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.45 E-value=0.24 Score=29.16 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 702 GYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.+|..++.+|...|++++|++.+++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46899999999999999999999988763
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.37 E-value=11 Score=36.26 Aligned_cols=19 Identities=11% Similarity=-0.239 Sum_probs=14.0
Q ss_pred HHHhcCCHHHHHHHHHHHh
Q 004632 676 GCRIHKRIDVMKTIEKELS 694 (741)
Q Consensus 676 ~~~~~g~~~~a~~~~~~~~ 694 (741)
.+.+.+++++|..+|+-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4667788888888887554
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.36 E-value=1.3 Score=41.50 Aligned_cols=77 Identities=10% Similarity=0.305 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCccHHH
Q 004632 566 VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRI-----FGVEPDLQHYA 639 (741)
Q Consensus 566 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 639 (741)
.++..++..+...|+.+.+...++++.. ..| +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4566677777777888888888888887 455 666788888888888888888887777655 56666666655
Q ss_pred HHHHH
Q 004632 640 CMVDL 644 (741)
Q Consensus 640 ~l~~~ 644 (741)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 296
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.30 E-value=5.1 Score=32.32 Aligned_cols=65 Identities=8% Similarity=0.136 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCC
Q 004632 466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVR 531 (741)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (741)
..+..+......|+-++-.+++.++.+ +-.+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 345556777788888888888888765 34677888888888888889888888888888877754
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.14 E-value=0.24 Score=29.74 Aligned_cols=27 Identities=7% Similarity=-0.123 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
++..|+..+.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777778888888888888888543
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.93 E-value=15 Score=39.95 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=38.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcC-CCCCchhHHHHHHHHHh---
Q 004632 471 ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYG-VRKDIYIDTALTDMYAK--- 546 (741)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 546 (741)
...+.-.|+++.|++.+-. ..+...+.+.+...+..+.-.+-.+... ..+.... -.|.+--+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567888988888766 2234455555555555443222222111 2221111 11112446677777776
Q ss_pred cCCHHHHHHHHHhcC
Q 004632 547 CGDLQTAQRVFDSMS 561 (741)
Q Consensus 547 ~g~~~~A~~~~~~~~ 561 (741)
..++.+|.+++--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 457788888877665
No 299
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.93 E-value=8.6 Score=34.14 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=16.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 703 YYTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 703 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
+|..|++-|...|+.++|..+|+-..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH
Confidence 46666666666677776666665443
No 300
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.88 E-value=1.2 Score=29.49 Aligned_cols=39 Identities=10% Similarity=-0.069 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL 707 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 707 (741)
.+..+.-++.+.|++++|....+.+++..|+|..+....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345567778999999999999999999999988665443
No 301
>PRK09687 putative lyase; Provisional
Probab=91.70 E-value=13 Score=35.67 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004632 332 YDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSA 408 (741)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 408 (741)
+..+....+.++.+.|+....-.+.+.+..++ .....+.++...|.. +|+..+..+.+. .||...-...+.+
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 34444445555555554322222223333323 233455666666664 566666666653 3355544444333
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.66 E-value=0.31 Score=28.29 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=14.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 704 YTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 704 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+..++.+|.+.|++++|.++|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.45 E-value=0.064 Score=45.48 Aligned_cols=84 Identities=8% Similarity=0.091 Sum_probs=59.3
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHH
Q 004632 101 VLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEG 180 (741)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 180 (741)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|-++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5677777788888888888888777667788888888888888888888888774332 3334556666666777777
Q ss_pred HHHHHHh
Q 004632 181 LKMFHSM 187 (741)
Q Consensus 181 ~~~~~~m 187 (741)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
No 304
>PRK09687 putative lyase; Provisional
Probab=91.15 E-value=15 Score=35.29 Aligned_cols=25 Identities=4% Similarity=-0.056 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632 673 LLNGCRIHKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~~~~~~p 698 (741)
.+.++...|+. +|...+.++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33334444442 34444444444444
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.97 E-value=2.8 Score=36.81 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHH--HH
Q 004632 567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV--TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYA--CM 641 (741)
Q Consensus 567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--~l 641 (741)
.+..+...|++.|+.+.|.+.|.++.+....|... .+..++......+++..+.....++...--.+. ...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56667778888888888888888888765555433 566677777777888888888777766211111 11111 11
Q ss_pred --HHHHHhcCChHHHHHHHHhC
Q 004632 642 --VDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 642 --~~~~~~~~~~~~A~~~~~~~ 661 (741)
+-.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11233566777777777666
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.80 E-value=0.54 Score=27.56 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 702 GYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998876
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=11 Score=33.05 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=57.8
Q ss_pred hhccCChHHHHHHHHHHHHhcCCcch---hHHHHHHHHHhcCCHHHHHHHHHhccCCCc--hHHHHHHHHHHhcCChHHH
Q 004632 409 CGNVGSLQLGLQIHGHVIKIDCKDEF---VQSSLIDMYSKCGFKNLAYLLFERIQQKSV--VMWNSMICGFYQNGNSLEA 483 (741)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 483 (741)
+...++++.|...++..+....+... +-..+.++....|.+++|...++....++- .....-.+.+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 55667777777777766654444332 445677777788888888888877766532 2234445677778888888
Q ss_pred HHHHHHHHHCC
Q 004632 484 INLFHQMYLNC 494 (741)
Q Consensus 484 ~~~~~~m~~~~ 494 (741)
..-|++....+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 88888777664
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.53 E-value=28 Score=37.44 Aligned_cols=146 Identities=13% Similarity=0.094 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHH---Hh----cCCh
Q 004632 579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLL---SR----SGDI 651 (741)
Q Consensus 579 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~ 651 (741)
.+.+.|..++++..+.| .|...--...+..+.. ++++.+.-.+..+...|..-....-..+.... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 35666666666666665 3322222222223333 55555555555554433221111111111111 00 1245
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc-C--ChHHHHHHH
Q 004632 652 EGAFKMIHSMPFPANGSIWGALLNGCRIH----KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE-G--NWDEFGKVR 724 (741)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~ 724 (741)
+.+...+.+....-+......+...+... .+++.|...+.++.... +.....|++.+..- | ....|.+++
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 56666666665455566666666655433 36788888888877766 66677777777652 2 256788888
Q ss_pred HHHHh
Q 004632 725 SIMEV 729 (741)
Q Consensus 725 ~~~~~ 729 (741)
.+..+
T Consensus 533 ~~~~~ 537 (552)
T KOG1550|consen 533 DQASE 537 (552)
T ss_pred HHHHh
Confidence 87766
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.50 E-value=0.61 Score=39.88 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632 683 IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG 715 (741)
Q Consensus 683 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 715 (741)
+++|..-+++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 455666666667777777777777777766544
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.50 E-value=0.39 Score=27.86 Aligned_cols=32 Identities=9% Similarity=-0.175 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTND 700 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 700 (741)
++..++.++.+.|++++|...++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45667888899999999999999999999974
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.42 E-value=0.4 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHH
Q 004632 702 GYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 702 ~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
.....|+.++...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888887765
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.30 E-value=0.45 Score=28.05 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=23.1
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHhcCCHHHHH
Q 004632 422 HGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAY 453 (741)
Q Consensus 422 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 453 (741)
++++++..|.+..++..+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666777777777777777777777777764
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.35 E-value=0.72 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 705 TLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 705 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999888654
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.20 E-value=38 Score=36.99 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004632 435 VQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMY 491 (741)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 491 (741)
+....+.-+...|++++|..+|.- .|+++.+++++....
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly~L------------------a~~~d~vl~lln~~L 454 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLYHL------------------AEEYDKVLSLLNRLL 454 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH------------------TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH------------------HhhHHHHHHHHHHHH
Confidence 444555666677888777776654 356666666666544
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.85 E-value=1.4 Score=41.60 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=67.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 004632 572 IDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD 650 (741)
Q Consensus 572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (741)
..-|.+.|.+++|+..|.+... +.| |.+++..-..+|.+..++..|..-...++..+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999988 788 88889888999999999999998888877632 1112233333333344456
Q ss_pred hHHHHHHHHhC-CCCCCHH
Q 004632 651 IEGAFKMIHSM-PFPANGS 668 (741)
Q Consensus 651 ~~~A~~~~~~~-~~~~~~~ 668 (741)
..+|.+-++.. ...|+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 66666666655 4566543
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.82 E-value=14 Score=31.72 Aligned_cols=39 Identities=3% Similarity=-0.014 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHcc
Q 004632 117 VHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDK 155 (741)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (741)
....+.+.+++|+...+..++..+.+.|.+.....++.-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 344445556666666666666666666666665555443
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.80 E-value=0.82 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 702 GYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3578889999999999999999988766
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.80 E-value=5.3 Score=35.10 Aligned_cols=94 Identities=10% Similarity=0.052 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHHH--HH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSMP----FPANGSIWG--AL 673 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~--~l 673 (741)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.++. ...+....+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677888899999999999999999988544443 5567778888888999999988888872 111222221 22
Q ss_pred HH--HHHhcCCHHHHHHHHHHHhc
Q 004632 674 LN--GCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 674 ~~--~~~~~g~~~~a~~~~~~~~~ 695 (741)
.. .+...+++..|-+.|-.+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 22 24567888888877766543
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.77 E-value=4.6 Score=34.15 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 004632 606 ILWACSHSGSVEEGKFYFNAMRIFGVEPDL-QHYACMVDLLSRSGDIEGAFKMIHSM-PFPANGSIWGALLNGCRIHKRI 683 (741)
Q Consensus 606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 683 (741)
++..-...++.+++..++.-+.- +.|.. ..-..-+..+.+.|+|.+|..+|+++ ...|....-..|+..|.....-
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33445677899999999999977 33442 22223455678999999999999999 4456556666666666544433
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHH
Q 004632 684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGK 722 (741)
Q Consensus 684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 722 (741)
..=...-+++++..++ +. -..|...+....+...|..
T Consensus 94 ~~Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD-PD-ARALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchhh
Confidence 3333344445554442 32 2344455555555555544
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.44 E-value=44 Score=36.85 Aligned_cols=216 Identities=13% Similarity=-0.009 Sum_probs=115.2
Q ss_pred HHhccccHHhHHHHHHHHHHcCCCCCch-------hHHHHH-HHHHhcCCHHHHHHHHHhcCC--------CCHHHHHHH
Q 004632 508 ACSNIGQLEKGKWVHHKLISYGVRKDIY-------IDTALT-DMYAKCGDLQTAQRVFDSMSE--------RNVVSWSAM 571 (741)
Q Consensus 508 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 571 (741)
......++++|..+..++...-..|+.. .++.+- ......|+++.|.++.+.... +....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3455677788887777775433332221 122221 123346888888887776542 456677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHH--HHhccCC--HHHHHHHHHHHHHc-CCCC-----CccHH
Q 004632 572 IDCYGMHGQLNDAASLFKQMLDSGIKPNEV---TFMNILW--ACSHSGS--VEEGKFYFNAMRIF-GVEP-----DLQHY 638 (741)
Q Consensus 572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~ll~--~~~~~~~--~~~a~~~~~~~~~~-~~~~-----~~~~~ 638 (741)
..+..-.|++++|..+.....+.--.-+.. .+..+.. .+..+|. +.+....+...... .... -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888899999998887766531122222 2333322 4566673 33344444444431 1111 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhccCCCC-c-hh---H
Q 004632 639 ACMVDLLSRSGDIEGAFKMIHSM-------PFPANGSIW--GALLNGCRIHKRIDVMKTIEKELSVTGTND-N-GY---Y 704 (741)
Q Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~-~~---~ 704 (741)
..+..++.+ .+.+..-.... ...|-.... ..++......|+.++|...+.++..+.-++ + .. .
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 33332222221 111222222 356677788999999999988887654332 1 11 1
Q ss_pred HHHHHH-Hh-hcCChHHHHHHHHH
Q 004632 705 TLLSNI-YA-EEGNWDEFGKVRSI 726 (741)
Q Consensus 705 ~~l~~~-~~-~~g~~~~A~~~~~~ 726 (741)
...+.+ |+ ..||.++|...+.+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 112222 22 46888888877665
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=6.1 Score=37.20 Aligned_cols=99 Identities=12% Similarity=0.206 Sum_probs=72.9
Q ss_pred HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004632 527 SYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE-RN--------VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIK 597 (741)
Q Consensus 527 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 597 (741)
..|......+...++.......+++.+...+-++.. |+ ..+|..++ -.-++++++.++..=++-|+.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccc
Confidence 345555666666677666677888888888877763 22 22332222 233778888888888888999
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632 598 PNEVTFMNILWACSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 598 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 629 (741)
||..+++.+++.+.+.+++.+|.++...|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999998888877763
No 322
>PRK12798 chemotaxis protein; Reviewed
Probab=88.18 E-value=30 Score=34.58 Aligned_cols=180 Identities=11% Similarity=0.123 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHHhcCC----CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHH
Q 004632 547 CGDLQTAQRVFDSMSE----RNVVSWSAMIDCY-GMHGQLNDAASLFKQMLDSGIKPNE----VTFMNILWACSHSGSVE 617 (741)
Q Consensus 547 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~ 617 (741)
.|+.+++.+.+..+.. +....|-.|+.+- ....++..|+++|+...- ..|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888773 4455677776653 456689999999998887 56643 24455555667888888
Q ss_pred HHHHHHHHHHH-cCCCCCccHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004632 618 EGKFYFNAMRI-FGVEPDLQHYA-CMVDLLSRSG---DIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKE 692 (741)
Q Consensus 618 ~a~~~~~~~~~-~~~~~~~~~~~-~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (741)
++..+-..-.. ....|-...|. .+...+.+.+ ..+.-..++..|..+-....|..+.+.....|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 87665554443 22233322222 2333343333 3445556666664344466788888888899999999999999
Q ss_pred HhccCCCCchhHHHHHH-----HHhhcCChHHHHHHHHHHHh
Q 004632 693 LSVTGTNDNGYYTLLSN-----IYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 693 ~~~~~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 729 (741)
+..+..... .-...+. +-.-..++++|.+.+..+-.
T Consensus 283 A~~L~~~~~-~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPDS-ADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCCC-cchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 988764322 2222222 23345677788777776544
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.98 E-value=3.4 Score=37.54 Aligned_cols=66 Identities=14% Similarity=-0.005 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-------hccC--CC----CchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632 667 GSIWGALLNGCRIHKRIDVMKTIEKEL-------SVTG--TN----DNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
...+..+.+.++..|+.+.....++++ .+.. |. ...+...+|.++.+.|++++|...|.++...+-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 335566677777777755444444444 4322 22 235678889999999999999999999888543
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.83 E-value=8.4 Score=38.50 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=89.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 004632 572 IDCYGMHGQLNDAASLFKQML-DSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGD 650 (741)
Q Consensus 572 ~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (741)
|.--...|+.-.|.+-+.... ...-.|+..... .......|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 333445677777665444444 433344443332 23456778999998888777651 22345667778888888899
Q ss_pred hHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHHHHH-HhhcCC
Q 004632 651 IEGAFKMIHSM-PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN-DNGYYTLLSNI-YAEEGN 716 (741)
Q Consensus 651 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~-~~~~g~ 716 (741)
+++|...-+-| +. -.++.............|-++++...+++...++|+ ++...+.|... |+..|+
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 99999888877 32 234444444444566778889999999999988876 44444444332 444443
No 325
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=2.7 Score=37.89 Aligned_cols=100 Identities=8% Similarity=-0.051 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH------cCCCCCc-----------cHHHHHHHHHHhcCChHHHHHHHHhC--C
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRI------FGVEPDL-----------QHYACMVDLLSRSGDIEGAFKMIHSM--P 662 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~--~ 662 (741)
+...-.+-+.+.|++.+|..-|++++. ..-+|.. ..+..+.+++...|++-++++.-.++ .
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 333444456677778887777776643 0111211 12222333444444444444444444 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
.+.+...|..-..+....-+.++|..-+.++++++|.-.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 233444444444444444455555555555555555433
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.69 E-value=47 Score=36.34 Aligned_cols=50 Identities=8% Similarity=-0.187 Sum_probs=28.7
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004632 643 DLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKE 692 (741)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 692 (741)
..+...|...+|...+..+....+......+.....+.|.++.+.....+
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 34455667777766666552224444555555555666776666665543
No 327
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.49 E-value=6.5 Score=29.87 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=59.4
Q ss_pred ChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 004632 110 DLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVR 189 (741)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (741)
..++|.-+-+-+...+-. ...+-...++.+...|++++|..+.+...-||...|-++-. .+.|-.+....-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345566666555554422 33344445667889999999999999998899999888766 467777777777777777
Q ss_pred CCCCCChhhH
Q 004632 190 EGVEPDFVTM 199 (741)
Q Consensus 190 ~~~~~~~~~~ 199 (741)
+| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 66 4444444
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.17 E-value=33 Score=36.89 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHH
Q 004632 615 SVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRS---GDIEGAFKMIHSMPFPANGSIWGALLNGCR----IHKRIDVMK 687 (741)
Q Consensus 615 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~ 687 (741)
+.+.|..++...-+.|. |+... .++.++... .+...|.++|..+...-....+..+...+. ...+.+.|.
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 45556666666655542 22222 233333322 244566666666622222333333332222 223566667
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhc-CChHHHHHHHHHHHhCC
Q 004632 688 TIEKELSVTGTNDNGYYTLLSNIYAEE-GNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 688 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 731 (741)
.+++++.+.++ +.+...++..+... ++++.+.-.+..+...|
T Consensus 385 ~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 385 AYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 77776666663 22233333222221 56666665555555444
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=1.9 Score=38.74 Aligned_cols=83 Identities=11% Similarity=-0.087 Sum_probs=52.3
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHH
Q 004632 647 RSGDIEGAFKMIHSM-PFPANG-SIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVR 724 (741)
Q Consensus 647 ~~~~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 724 (741)
...+++.|+..+.+. ...|.. ..|..-+-.+.+..+++.+..--.+++++.|+.....+.|+........+++|+..+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 344556666665555 444444 344444555566667777777777777777777777777777777777777777777
Q ss_pred HHHHh
Q 004632 725 SIMEV 729 (741)
Q Consensus 725 ~~~~~ 729 (741)
++..+
T Consensus 102 qra~s 106 (284)
T KOG4642|consen 102 QRAYS 106 (284)
T ss_pred HHHHH
Confidence 76644
No 330
>PRK10941 hypothetical protein; Provisional
Probab=86.99 E-value=3.7 Score=38.73 Aligned_cols=61 Identities=13% Similarity=-0.075 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 004632 670 WGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
.+++-.++.+.++++.|..+.+.++.+.|+++.-+...|-+|.+.|.+..|..-++.-.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4555566788888888888888888888888888888888888888888888887776553
No 331
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.78 E-value=0.48 Score=44.81 Aligned_cols=115 Identities=9% Similarity=0.038 Sum_probs=55.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 004632 612 HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPAN-GSIWGALLNGCRIHKRIDVMKTI 689 (741)
Q Consensus 612 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 689 (741)
..|.++.|++.|...+..+ ++....|..-..++.+.++...|++-+... ..+|| ..-|-.-..+-+..|++++|.+.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4456666666666665533 233444555555555666666666555554 33332 22333334444555666666666
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 690 EKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 690 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
+..+.+++-+.. .-..|-.+.-+.+..++-...+++.+
T Consensus 205 l~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 205 LALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHHH
Confidence 666655543311 22223333334444444444444333
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.67 E-value=2.5 Score=37.40 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHH
Q 004632 638 YACMVDLLSRSGDIEGAFKMIHSM-PF-PANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG---YYTLLS 708 (741)
Q Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~ 708 (741)
.+..+..+.+.+...+|+...+.- +. |.+......++..++-.|++++|..-++-+-++.|++.. .|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 444556677888999999888766 43 446667778888899999999999999999999888553 344444
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.19 E-value=1.5 Score=24.69 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=12.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 704 YTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 704 ~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
+..++.+|...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.14 E-value=8.8 Score=39.71 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=47.1
Q ss_pred hcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 004632 345 ECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGH 424 (741)
Q Consensus 345 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 424 (741)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|.+..+ |..++-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 3344444444433322 344577777777777777777777766554 23344444444554443333333
Q ss_pred HHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHH
Q 004632 425 VIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFE 457 (741)
Q Consensus 425 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 457 (741)
..+.|.. +....+|...|+++++.+++.
T Consensus 718 ~~~~g~~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 718 AKKQGKN-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHhhccc-----chHHHHHHHcCCHHHHHHHHH
Confidence 3333322 222333444455555544443
No 335
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.06 E-value=18 Score=36.09 Aligned_cols=59 Identities=10% Similarity=-0.086 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHHHHHHh-hcCChHHHHHHHHHHHh
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSVTGTN-DNGYYTLLSNIYA-EEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 729 (741)
...+..+.+.|-+..|.++.+-+..++|. ||-.....++.|+ +++.++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34455678899999999999999999998 8766666666555 67888878888887654
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.03 E-value=7.5 Score=34.55 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCCccHHHHHHHH
Q 004632 568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFYFNAMRIF--GVEPDLQHYACMVDL 644 (741)
Q Consensus 568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 644 (741)
.+..++.+.+.+...+++...+.-++ -+|. ..+-..++..++-.|+|++|..-++-.-.. ...+...+|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677778888999988888777 4564 446677788889999999998888877662 223335566666654
Q ss_pred HHhcCChHHHHHHHHhC--C---CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 645 LSRSGDIEGAFKMIHSM--P---FPANGSIWGALLNG--CRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 645 ~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
-.-. -++|..- + ..|.+.=...+..+ +...|.-+.+..+-+++.+..|..+
T Consensus 82 ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 82 EAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 2211 1223222 1 11222222333333 3334455666677777777766543
No 337
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.95 E-value=2.4 Score=32.09 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChH-HHHHHHHHH
Q 004632 663 FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN--DNGYYTLLSNIYAEEGNWD-EFGKVRSIM 727 (741)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 727 (741)
.|.|......+...+...|++++|++.+-.+.+.+|. +...-..+..++.-.|.-+ -+.++..+|
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4567788888888888999999999998888888765 4667778888888888744 555555544
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.94 E-value=3 Score=38.69 Aligned_cols=60 Identities=8% Similarity=-0.130 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 670 WGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 670 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+......|.++|.+.+|.++-++++.++|-+...+..|..+|...||-=+|.+.|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444566788999999999999999999999999999999999999999899888888755
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.84 E-value=1.1 Score=37.95 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcC
Q 004632 65 VLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFG 144 (741)
Q Consensus 65 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (741)
.+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++ ..+..-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 3566666677777777777777766555556667777777777776666666655 112233344555566666
Q ss_pred ChhHHHHHHccCC
Q 004632 145 CLDDARKVFDKMT 157 (741)
Q Consensus 145 ~~~~a~~~~~~~~ 157 (741)
.++++.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 6666666655543
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.73 E-value=58 Score=35.36 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCH
Q 004632 536 IDTALTDMYAKCGDLQTAQRVFDSMSERNV 565 (741)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 565 (741)
....|+..|...+++.+|...+-.+.++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 344588888888999999988888876544
No 341
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.65 E-value=36 Score=32.99 Aligned_cols=116 Identities=9% Similarity=-0.069 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 004632 615 SVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSG-------DIEGAFKMIHSMPFPANGSIWGALLNGCRI----HKRI 683 (741)
Q Consensus 615 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 683 (741)
+..+|..+++++-+.|..+.......+...|.... +...|...+.++...-+......+...+.. ..+.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 55556666665555543322122233333333321 123566666665222344444444443322 2367
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcC---------------ChHHHHHHHHHHHhCCCc
Q 004632 684 DVMKTIEKELSVTGTNDNGYYTLLSNIYAEEG---------------NWDEFGKVRSIMEVTGLK 733 (741)
Q Consensus 684 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 733 (741)
++|...|+++.+.+. ......++ .+...| +...|...+......|..
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 777777777777666 44555555 555444 666777777766665543
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.11 E-value=21 Score=29.80 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=28.8
Q ss_pred cCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 004632 310 LGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERN 363 (741)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 363 (741)
.++.+++..++..+.-.. |....+-..-...+...|++++|..+|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 344444444444443322 5555555555556666677777777777666543
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.65 E-value=9.1 Score=33.84 Aligned_cols=72 Identities=8% Similarity=0.009 Sum_probs=49.7
Q ss_pred ChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CchhHHHHHHHHhhcCChHHHH
Q 004632 650 DIEGAFKMIHSMPFPA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN----DNGYYTLLSNIYAEEGNWDEFG 721 (741)
Q Consensus 650 ~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 721 (741)
.-++|.+.|-.+...| +...+...+..+....|.+++..++-+++++.+. |+.++..|+.+|.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4466777766662222 2333333444455578889999999888876544 5788999999999999998874
No 344
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.64 E-value=12 Score=33.97 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=71.7
Q ss_pred HHhcCCHHHHHHHHHhcC--CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHH
Q 004632 544 YAKCGDLQTAQRVFDSMS--ERNVVS-WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFM-NILWACSHSGSVEEG 619 (741)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a 619 (741)
|....+++.|..-+.+.. .|++.+ |+.-+-++.+.++++.+..=-.+.++ +.||..--. .+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 555667777777776655 466643 45567777788888888887777777 788876433 344466777888888
Q ss_pred HHHHHHHHH----cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 620 KFYFNAMRI----FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 620 ~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
+..+++..+ ..+++...+...|..+--..=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888754 333333444444444322222333444444444
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.48 E-value=5.1 Score=32.46 Aligned_cols=72 Identities=15% Similarity=0.019 Sum_probs=44.7
Q ss_pred CCCccHHHHHHHHHHhcCCh---HHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 004632 632 EPDLQHYACMVDLLSRSGDI---EGAFKMIHSM-P-FPA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY 703 (741)
Q Consensus 632 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 703 (741)
.++..+--.+..++.+..+. .+.+.++++. + .+| ......-|.-++.+.++++.+..+.+..++..|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45555555667777766544 3456666665 2 233 23344445556777788888888888887777777654
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.44 E-value=34 Score=31.62 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=115.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccccHHhHHHHHHHHHH---cCC--CCCchhHHHHHHHHHhc
Q 004632 476 QNGNSLEAINLFHQMYLNCLEMDEV---TFLTAIQACSNIGQLEKGKWVHHKLIS---YGV--RKDIYIDTALTDMYAKC 547 (741)
Q Consensus 476 ~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 547 (741)
+...+++|+.-|++..+..-.-... ....++....+.+++++....+.++.. ..+ .-+....+.+++..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3458899999999988753333333 444567788899999999888887742 222 22455677788877777
Q ss_pred CCHHHHHHHHHhcCC-----CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHH
Q 004632 548 GDLQTAQRVFDSMSE-----RNV----VSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP----N-------EVTFMNIL 607 (741)
Q Consensus 548 g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~-------~~~~~~ll 607 (741)
.+.+--..+++.-.+ .|. .|-..|...|...+.+..-.++++++...--.. | ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 777666666554331 222 234556777788888888888888887641111 1 23566667
Q ss_pred HHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHH----HHHHhcCChHHHH
Q 004632 608 WACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMV----DLLSRSGDIEGAF 655 (741)
Q Consensus 608 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~----~~~~~~~~~~~A~ 655 (741)
..|..+++-.....++++.+. ....|.+.+...+- ....+.|++++|-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 778888888888888888776 33345554444332 2345667777763
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.29 E-value=13 Score=32.96 Aligned_cols=73 Identities=8% Similarity=-0.021 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCccHHHHHHHHHHhcCChHHHH
Q 004632 582 NDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI---FGVEPDLQHYACMVDLLSRSGDIEGAF 655 (741)
Q Consensus 582 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (741)
+.|.+.|-.+...+.--+......|. .|....+.++++.++-++.+ .+-.+++..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666666654333333333333 33345677777777777776 222566777777777777777777663
No 348
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.18 E-value=3.7 Score=35.30 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632 683 IDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 683 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
+++|...|+++...+|.|..+...|--+ .+|-++..++.+.++
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 6778888888899999988766665422 245566666655443
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.85 E-value=3.8 Score=38.44 Aligned_cols=102 Identities=10% Similarity=0.141 Sum_probs=66.8
Q ss_pred hCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC-CCc-----cchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 004632 23 TGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE-PDS-----FMWAVLIKCYMWNNFFEESILLYHKMIREQATISNF 96 (741)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 96 (741)
.|...+..+...++..-....+++++...+-+++. |+. .+-...++.| -.-+++.++.++..=+..|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 35555666666777776777778888777666553 321 1112223322 2346677777777777778888888
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHhC
Q 004632 97 IYPSVLRACSSLGDLGSGEKVHGRIIKCG 125 (741)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 125 (741)
++..++..+.+.+++..|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888777777666554
No 350
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.22 E-value=8.4 Score=29.12 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 004632 382 EALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIK 427 (741)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (741)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556667777778899999999999999999999999999987663
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.71 E-value=61 Score=33.26 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 004632 466 MWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYA 545 (741)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 545 (741)
..-+++..+..+-.+.-...+..+|..-| -+-..|..++.+|... ..++-..+|+++.+..+. |+..-..|...|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34445555555555555566666665532 3445555666666555 445555666666665543 3444444555554
Q ss_pred hcCCHHHHHHHHHhcCC---C---CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCC
Q 004632 546 KCGDLQTAQRVFDSMSE---R---NV---VSWSAMIDCYGMHGQLNDAASLFKQMLDS-GIKPNEVTFMNILWACSHSGS 615 (741)
Q Consensus 546 ~~g~~~~A~~~~~~~~~---~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~ 615 (741)
+ ++...+..+|.++.. | +. ..|..+... -..+.+..+.+..+.... |..--...+..+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4 666666666655431 0 00 123322221 122344444444444332 212222334444445555566
Q ss_pred HHHHHHHHHHHHH
Q 004632 616 VEEGKFYFNAMRI 628 (741)
Q Consensus 616 ~~~a~~~~~~~~~ 628 (741)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666555
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.49 E-value=3 Score=30.09 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCChHHHHHHHH
Q 004632 677 CRIHKRIDVMKTIEKELSVTGTNDNGY---YTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 677 ~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
+....+.++|+..++++++..++.+.- +-.|+.+|...|++++.+++--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778899999999999888776654 5555677888999998887743
No 353
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.29 E-value=9.1 Score=29.30 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHHH
Q 004632 382 EALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLI 440 (741)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 440 (741)
+...-++.+....+.|++......+.+|.+.+++..|.++++.+..........|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45566667777788999999999999999999999999999877654333322444443
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.25 E-value=81 Score=34.34 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=24.3
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004632 647 RSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMK 687 (741)
Q Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 687 (741)
+.++.++|+++.++- .|...|..|+..+.....+-.++
T Consensus 673 el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHHHHH
Confidence 445666666666554 57788888887766655544444
No 355
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.25 E-value=64 Score=33.15 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 004632 498 DEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDC 574 (741)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 574 (741)
|.....+++..+...-.+.-+..+..+|.+.|- +...+..++++|... ..+.-..+++++.+ .|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 344444445555544444444555555544331 233344444444444 33334444443332 222222333333
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004632 575 YGMHGQLNDAASLFKQMLD 593 (741)
Q Consensus 575 ~~~~~~~~~A~~~~~~~~~ 593 (741)
|-+ ++.+.+..+|.++..
T Consensus 142 yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-hchhhHHHHHHHHHH
Confidence 322 444444444444443
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.15 E-value=5.1 Score=41.12 Aligned_cols=101 Identities=13% Similarity=-0.056 Sum_probs=61.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004632 611 SHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKT 688 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 688 (741)
...|+...|...+..+......-.....-.|.+.+.+.|-..+|-.++... . ..-.+.++..+++++....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 345777777777766655322223334445666666667666676666554 1 12334455666666777777777777
Q ss_pred HHHHHhccCCCCchhHHHHHHHH
Q 004632 689 IEKELSVTGTNDNGYYTLLSNIY 711 (741)
Q Consensus 689 ~~~~~~~~~p~~~~~~~~l~~~~ 711 (741)
.++.+.+++|+++.+-..|..+-
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHH
Confidence 77777777777777666655443
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.90 E-value=86 Score=34.39 Aligned_cols=195 Identities=9% Similarity=0.015 Sum_probs=98.3
Q ss_pred CCChhhhHHHHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCcc-----cHH
Q 004632 26 HYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYM-WNNFFEESILLYHKMIREQATISNF-----IYP 99 (741)
Q Consensus 26 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~ 99 (741)
..+...|..||..-.++ ++-+.+-+.--++....++-.+.+.|. ...+++.|...+++.+...-+++-. .-.
T Consensus 27 ~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ 104 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQF 104 (608)
T ss_pred hhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 34556777777654433 111111111111123455666666665 6778888888888765433222211 112
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhCCC----CChhhhhHH-HHHhHhcCChhHHHHHHccCCC-------CCceeHHHH
Q 004632 100 SVLRACSSLGDLGSGEKVHGRIIKCGFD----KDDVIQTSI-LCTYGEFGCLDDARKVFDKMTS-------RDVVSWSSI 167 (741)
Q Consensus 100 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l 167 (741)
.+++.+.+.+... |...++..++.--. +-...+..+ +..+...+|+..|.+.++.+.. |....+-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3445555555444 77777776654222 222333333 2233333788888887776642 122223333
Q ss_pred HHHH--HhCCChhHHHHHHHHhHHCCC---------CCChhhHHHHHHHhc--ccCChhhHHHHHHHHH
Q 004632 168 IASY--FDNADVSEGLKMFHSMVREGV---------EPDFVTMLSLAEACG--ELCSLRPARSIHGHVL 223 (741)
Q Consensus 168 i~~~--~~~g~~~~a~~~~~~m~~~~~---------~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 223 (741)
+.+. .+.+..+++++.++.+..... .|-..++..+++.++ ..|+++.+...+.++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3332 345666677777766633211 233446666666655 4566666666555543
No 358
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.84 E-value=33 Score=29.59 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhc
Q 004632 217 SIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVK 256 (741)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 256 (741)
++...+.+.+++|+...+..+++.+.+.|++.....++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 4445555667777777777777777776666655554443
No 359
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.73 E-value=3 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004632 668 SIWGALLNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
.+++.+...+...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888775
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.68 E-value=17 Score=27.47 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=22.6
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 689 IEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 689 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.+++..+.+|+|......++..+...|++++|++.+-.+.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666555544
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.25 E-value=95 Score=34.48 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=16.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 004632 605 NILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 605 ~ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
.|+......|+.++|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455566677777777777777766
No 362
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.45 E-value=58 Score=31.53 Aligned_cols=135 Identities=10% Similarity=0.035 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--cC----ChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHH
Q 004632 380 SKEALELLVQMQTWGLMPDSFSVASSLSACGN--VG----SLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAY 453 (741)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 453 (741)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+|+.|.+..+.-+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs------------------- 138 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS------------------- 138 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC-------------------
Confidence 34566788888998888888777554433332 12 234555666666665553222
Q ss_pred HHHHhccCCCchHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcccc--HHhHHHHHHHH
Q 004632 454 LLFERIQQKSVVMWNSMICGFYQNGN----SLEAINLFHQMYLNCLEMDE--VTFLTAIQACSNIGQ--LEKGKWVHHKL 525 (741)
Q Consensus 454 ~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~ 525 (741)
++..++..++.. ..++ .+.+..+|+.+...|...+. .....++..+..... ..++.++++.+
T Consensus 139 --------~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 139 --------PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred --------ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 111222222211 1111 24456667777776655432 233333333322222 44677888888
Q ss_pred HHcCCCCCchhHHHHHHH
Q 004632 526 ISYGVRKDIYIDTALTDM 543 (741)
Q Consensus 526 ~~~~~~~~~~~~~~l~~~ 543 (741)
.+.|+++....|..+.-.
T Consensus 209 ~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 209 KKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHcCCccccccccHHHHH
Confidence 888888877776655433
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.89 E-value=73 Score=32.32 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=52.6
Q ss_pred cCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhc----CCHH---HHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 004632 648 SGDIEGAFKMIHSM-PFPANGS----IWGALLNGCRIH----KRID---VMKTIEKELSVTGTNDNGYYTLLSNIYAEEG 715 (741)
Q Consensus 648 ~~~~~~A~~~~~~~-~~~~~~~----~~~~l~~~~~~~----g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 715 (741)
.|+.++|+.++-.+ ...|+.. -|..+++.+.+. |..- +-....++++-.+.+|.-++..-+--..+..
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 46778888887776 4566654 344455544322 1111 2233344555556666655444444556788
Q ss_pred ChHHHHHHHHHHHhCCCccCC
Q 004632 716 NWDEFGKVRSIMEVTGLKKVP 736 (741)
Q Consensus 716 ~~~~A~~~~~~~~~~~~~~~~ 736 (741)
++..|+++|+++.+-+-..+|
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~ 811 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEP 811 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcc
Confidence 999999999999884433444
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.76 E-value=3.5 Score=23.03 Aligned_cols=32 Identities=13% Similarity=-0.144 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 668 SIWGALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
..+..++..+...|+++.|...++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677888899999999999999999988773
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.73 E-value=9.8 Score=39.19 Aligned_cols=133 Identities=13% Similarity=-0.019 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHH-hcCChHHHHHHHHhC-CCCC--CHHHH
Q 004632 597 KPNEVTFMNILWACSH--SGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLS-RSGDIEGAFKMIHSM-PFPA--NGSIW 670 (741)
Q Consensus 597 ~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~-~~~~--~~~~~ 670 (741)
-|+..+...++.-... ....+-+-.++..|.. ...|--.+.| +...|. -.|+...|.+.+.++ ...| ....+
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 3555555555442221 1223344444444433 2223322333 333444 468999999999888 3333 34466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
..|...+.+.|....|-.++.+.+.+....+-++..++++|....+.++|++.++..++..
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 7788889999999999999999999998888999999999999999999999999877643
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.21 E-value=17 Score=27.79 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=34.5
Q ss_pred HHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 004632 35 LIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESILLYHKMIREQ 90 (741)
Q Consensus 35 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 90 (741)
-+.++..+|++++|..+.+....||...|-.+-. .+.|-..++..-+.+|-..|
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3456777777777777777777777777755544 34555555555555555544
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.68 E-value=23 Score=28.90 Aligned_cols=65 Identities=6% Similarity=-0.139 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhc-cCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 665 ANGSIWGALLNGCRIHKR---IDVMKTIEKELSV-TGTN-DNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 665 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
++..+...+.+++....+ ..+.+.+++.+.+ ..|. .....+.|+-.+++.|+|++++.+.+.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444444444444332 2233444444443 2222 122334444444555555555544444433
No 368
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.46 E-value=31 Score=26.61 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHH-cCCCCCchhHHHHHH
Q 004632 482 EAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLIS-YGVRKDIYIDTALTD 542 (741)
Q Consensus 482 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 542 (741)
+...-++.+....+.|++....+.+++|.+.+++..|.++++.... .|.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 4555666666777889999999999999999999999999988754 3322 226666554
No 369
>PRK12798 chemotaxis protein; Reviewed
Probab=77.22 E-value=85 Score=31.58 Aligned_cols=188 Identities=9% Similarity=0.031 Sum_probs=120.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCCH
Q 004632 539 ALTDMYAKCGDLQTAQRVFDSMSERNVVS-WSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILW-ACSHSGSV 616 (741)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~ 616 (741)
..+-.....|+++-...++..-..++... ...-+.+| -.|+.+++.+.+..+......+....+..|+. ......+.
T Consensus 86 Aa~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 86 AALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 33444456778888888777766543321 11112223 36899999999998887666667777887877 46677899
Q ss_pred HHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHhcCChHHHHHH----HHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 004632 617 EEGKFYFNAMRIFGVEPD----LQHYACMVDLLSRSGDIEGAFKM----IHSMPFPANGS-IWGALLNGCRIHKRIDVMK 687 (741)
Q Consensus 617 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~ 687 (741)
.+|+++|+...=. -|. .-....-+-.....|+.+++..+ +++....|-.. .+..+..+..+.++-..-.
T Consensus 165 ~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~ 242 (421)
T PRK12798 165 ATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDA 242 (421)
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHH
Confidence 9999999988652 232 22333344556788888876554 45554344333 3444455555555444444
Q ss_pred HHHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 688 TIEKELSVTGTN-DNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 688 ~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.+.+-+..++|+ ...+|..++..-.-.|+.+-|.-.-++.+.
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~ 285 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALK 285 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 444444455665 345788889889999999999888887766
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.96 E-value=70 Score=32.98 Aligned_cols=131 Identities=15% Similarity=0.015 Sum_probs=65.1
Q ss_pred HHHHHhCCCCChhh--hHHHHHHHHccCChhhHHHhhccCCCCCcc--chHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 004632 18 AHLLVTGLHYDPPA--STRLIESYAEMGSLRSSRLVFDTFKEPDSF--MWAVLIKCYMWNNFFEESILLYHKMIREQATI 93 (741)
Q Consensus 18 ~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 93 (741)
+.+++.|..|+... ..+.++..++.|+.+-...+++.-..|+.. ...+.+...+..|+.+.+..+++ .|...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcc
Confidence 34455787776543 355666667777777666666554434322 11233444456677665544443 22211
Q ss_pred ----CcccHHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChhh--hhHHHHHhHhcCChhHHHHHHccCC
Q 004632 94 ----SNFIYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVI--QTSILCTYGEFGCLDDARKVFDKMT 157 (741)
Q Consensus 94 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (741)
+....+ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+.-+++.-.
T Consensus 95 ~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~ 159 (413)
T PHA02875 95 DDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159 (413)
T ss_pred cccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 111112 22223334554 35555556666554321 2234455556677766666665443
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.88 E-value=38 Score=34.25 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--hccCCHHHHHHHHHHHHH
Q 004632 576 GMHGQLNDAASLFKQMLDSGIKPNEV--TFMNILWAC--SHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 576 ~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~--~~~~~~~~a~~~~~~~~~ 628 (741)
.+.+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555666666666666654 333332 333333333 334455666666665544
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.64 E-value=94 Score=31.80 Aligned_cols=106 Identities=8% Similarity=-0.144 Sum_probs=64.6
Q ss_pred HHhccCCHHHHHHHHHHHHH---cCCCCCcc-----HHHHHHHHHHhcCChHHHHHHHHhC----------CCCC-----
Q 004632 609 ACSHSGSVEEGKFYFNAMRI---FGVEPDLQ-----HYACMVDLLSRSGDIEGAFKMIHSM----------PFPA----- 665 (741)
Q Consensus 609 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~----- 665 (741)
.+...|++.+|.+++...-- .|...++. .+|.|+-+..+.|.+.-+..+|.++ ++.|
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556777777777654311 22222211 2244444445555555554444433 1122
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 004632 666 -----NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEE 714 (741)
Q Consensus 666 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 714 (741)
+-......+-.+...|+.-.|.++|.++....-.+|..|..|+.+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 2223445566678889999999999999988888899999999888754
No 373
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=75.96 E-value=59 Score=29.19 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=47.0
Q ss_pred ccCChHHHHHHHHHHHHhcCCcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCch-HHHHHHH--HHHhcCChHHHHHHH
Q 004632 411 NVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVV-MWNSMIC--GFYQNGNSLEAINLF 487 (741)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~--~~~~~g~~~~A~~~~ 487 (741)
+.|-...|.--|...+...|..+.+++.+.--+...|+++.|.+.|+...+-|+. -|..+-. ++---|++.-|.+-+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 3445555555566666666666667777777777777777777777766665442 2222211 122346666666555
Q ss_pred HHHHH
Q 004632 488 HQMYL 492 (741)
Q Consensus 488 ~~m~~ 492 (741)
.+.-+
T Consensus 157 ~~fYQ 161 (297)
T COG4785 157 LAFYQ 161 (297)
T ss_pred HHHHh
Confidence 55544
No 374
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.81 E-value=33 Score=26.14 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHH-HcCCCCCchhHHHHH
Q 004632 480 SLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLI-SYGVRKDIYIDTALT 541 (741)
Q Consensus 480 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~ 541 (741)
.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-.. +.|. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 33556666677777788888888888899988889888888888775 3332 333555544
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.71 E-value=47 Score=27.84 Aligned_cols=77 Identities=9% Similarity=0.132 Sum_probs=42.7
Q ss_pred hHHHHHHHHccCChhhHHHhhccCCC---------CCccchHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCcccHHHH
Q 004632 32 STRLIESYAEMGSLRSSRLVFDTFKE---------PDSFMWAVLIKCYMWNNF-FEESILLYHKMIREQATISNFIYPSV 101 (741)
Q Consensus 32 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 101 (741)
.|.++..++..+++...+.+++.+.- .+-..|+.++.+...... ---+..+|..|.+.+.++++..|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 36666666666666666666665532 233455666666544444 23445555555555555555566666
Q ss_pred HHHhhcC
Q 004632 102 LRACSSL 108 (741)
Q Consensus 102 l~~~~~~ 108 (741)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6655443
No 376
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.62 E-value=5.4 Score=35.70 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=27.7
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 004632 647 RSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 647 ~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
+.++.+.|.+++.++ ..+.....|..+...--++|+++.|.+.|++.++++|++.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 444555555555554 2233444555555555555555555555555555555543
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.35 E-value=15 Score=27.26 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHHH
Q 004632 13 LTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEESI 80 (741)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 80 (741)
+.++|..+++.|+ .+.......-.+=...|+.+.|+.++..++ .....|..+++++...|+-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4466777777774 444444333333345678888888888888 67777888888888877755443
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.35 E-value=30 Score=26.89 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=53.9
Q ss_pred CChhhHHHHHHHHHHhCCCCChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhH
Q 004632 109 GDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMV 188 (741)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 188 (741)
...++|..+.+.+...+. -...+.-..+..+..+|++++|+..=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356778888888877663 333344445667889999999966656666688888877765 57888888888888776
Q ss_pred HCC
Q 004632 189 REG 191 (741)
Q Consensus 189 ~~~ 191 (741)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 665
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.89 E-value=71 Score=29.13 Aligned_cols=22 Identities=0% Similarity=-0.037 Sum_probs=14.5
Q ss_pred HhccCCHHHHHHHHHHHHHcCC
Q 004632 610 CSHSGSVEEGKFYFNAMRIFGV 631 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~~~~ 631 (741)
-...+++.+|+.+|+++....+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677777777777766433
No 380
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.74 E-value=1.2e+02 Score=31.78 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH-hccCCHHHHHHHHHHHHH
Q 004632 573 DCYGMHGQLNDAASLFKQMLDSGIKP--NEVTFMNILWAC-SHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 573 ~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~ 628 (741)
..+.+.|-+..|.++-+-+.+ +.| |+.....+++.| .+..++.-.+++++....
T Consensus 350 ~~l~~RGC~rTA~E~cKllls--Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLS--LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 345566777777777776666 444 344555566643 455666666666666644
No 381
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.54 E-value=75 Score=34.31 Aligned_cols=184 Identities=15% Similarity=0.212 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHhccccHHhHHHHHHHHHHcC--CCC
Q 004632 465 VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEV----------TFLTAIQACSNIGQLEKGKWVHHKLISYG--VRK 532 (741)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~ 532 (741)
.+...++..|....+++..+++.+.+.+- ||.. .|.-.++--.+.|+.++|....-.+.+.. +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 45556667777777888888888877653 3221 12223333345677777777666665432 233
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 004632 533 DIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVT---FMNILWA 609 (741)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~ 609 (741)
|. ||-+|+. ++.|- +-..|...+..+.|.+.|++.-+ +.|+..+ +..|+.+
T Consensus 279 Dm---------~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 DM---------YCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ce---------eeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 32 3333322 22211 11123344556778888888877 7776542 3333332
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004632 610 CSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTI 689 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 689 (741)
-. ..++...++ ...|+ .|...+.+.|..+.-.++++-. .++.+-.-++|+.+|...
T Consensus 333 aG--~~Fens~El----q~Igm--------kLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 333 AG--EHFENSLEL----QQIGM--------KLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hhccchHHH----HHHHH--------HHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 21 122222222 12221 1334556777777766666433 233344556788888888
Q ss_pred HHHHhccCCCCc
Q 004632 690 EKELSVTGTNDN 701 (741)
Q Consensus 690 ~~~~~~~~p~~~ 701 (741)
.+.+.++.|+..
T Consensus 389 ae~mfKLk~P~W 400 (1226)
T KOG4279|consen 389 AEMMFKLKPPVW 400 (1226)
T ss_pred HHHHhccCCcee
Confidence 888888887754
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=84 Score=29.55 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=77.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHhccCCHHHHHHHHHHHHH--cCC--CCCccHHHHHH
Q 004632 574 CYGMHGQLNDAASLFKQMLDSGIKPNEV-------TFMNILWACSHSGSVEEGKFYFNAMRI--FGV--EPDLQHYACMV 642 (741)
Q Consensus 574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~~~~~l~ 642 (741)
-..+.+++++|+..+.+....|+..+.. +...+...|...|++....+.....++ .++ +....+..+|+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 3455667777777777777776665532 444556667777766554444333322 111 11233344444
Q ss_pred HHHHh-cCChHHHHHHHHhC---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHh----ccC--CCCchhHHHH
Q 004632 643 DLLSR-SGDIEGAFKMIHSM---PFPAN-----GSIWGALLNGCRIHKRIDVMKTIEKELS----VTG--TNDNGYYTLL 707 (741)
Q Consensus 643 ~~~~~-~~~~~~A~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~--p~~~~~~~~l 707 (741)
+.+-. ...++..++++... ..+.. ...-..++..+.+.|.+.+|.....-+. +.+ |.-...+..-
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllE 171 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLE 171 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhh
Confidence 44322 22344444444433 00111 1112345566677777777776654433 222 2233445555
Q ss_pred HHHHhhcCChHHHHHHHHHH
Q 004632 708 SNIYAEEGNWDEFGKVRSIM 727 (741)
Q Consensus 708 ~~~~~~~g~~~~A~~~~~~~ 727 (741)
..+|....+..++..-+...
T Consensus 172 SKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 172 SKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHHhhhhhhhHHHHH
Confidence 66677777766666555444
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.01 E-value=7.8 Score=21.97 Aligned_cols=29 Identities=7% Similarity=-0.008 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 004632 681 KRIDVMKTIEKELSVTGTNDNGYYTLLSN 709 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 709 (741)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788889999999888888888777664
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.82 E-value=59 Score=34.10 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004632 542 DMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKF 621 (741)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 621 (741)
+...+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+..+ |..|+-.+...|+.+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3455778888888776654 3566788888888888888888888877665 3456666777777776666
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCC
Q 004632 622 YFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMP 662 (741)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (741)
+-....+.|. .|.-.-+|...|++++..+++.+-.
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 6666666553 2333446677888888888887764
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.82 E-value=2.7 Score=42.09 Aligned_cols=100 Identities=6% Similarity=-0.070 Sum_probs=66.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 004632 607 LWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA-NGSIWGALLNGCRIHKRI 683 (741)
Q Consensus 607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 683 (741)
+......+.++.|+.++.++++. .|+ ...|..=..++.+.+++..|+.-+.++ ...| ....|..-+.++...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44556677888888888888773 454 333433346677778887777666665 3334 334555555667777788
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHH
Q 004632 684 DVMKTIEKELSVTGTNDNGYYTLLS 708 (741)
Q Consensus 684 ~~a~~~~~~~~~~~p~~~~~~~~l~ 708 (741)
-+|...++....+.|+++.+...+.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 8888888888888888776555443
No 386
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.69 E-value=1.2e+02 Score=31.24 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=130.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccc------cHHhHHHHHHHHHHc-CCCC-CchhHHHHHHHHHhcCCHH-HH
Q 004632 483 AINLFHQMYLNCLEMDEVTFLTAIQACSNIG------QLEKGKWVHHKLISY-GVRK-DIYIDTALTDMYAKCGDLQ-TA 553 (741)
Q Consensus 483 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~-~A 553 (741)
..++|++..+. .|+...+...|..|...- .......+++...+. +..+ ....|..+.-.+....... -|
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 34556655442 455566666666664432 233344455555442 2222 2334444444444444333 34
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHH--HHHHHHHHH
Q 004632 554 QRVFDSMSERNVVSWSAMIDCYGMHG-QLNDA-ASLFKQMLDSGIKPNEVTFMNILWACSHSGS-VEEG--KFYFNAMRI 628 (741)
Q Consensus 554 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a--~~~~~~~~~ 628 (741)
..+..+....+...|..-+....... +.+-- .+.+......-..+-...|.... .|+ .+.. ..++..+.+
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 44444555566666665555544221 22111 11222222211122223333333 222 1111 122333333
Q ss_pred cCCCCCc-cHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhccCCCCchh
Q 004632 629 FGVEPDL-QHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGC--RIHKRIDVMKTIEKELSVTGTNDNGY 703 (741)
Q Consensus 629 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~ 703 (741)
.+ .|+. ..-+.+++.+.+.|-..+|...+.+. -.||+...+..++..- ..+-+...+..+|+.+..-...++..
T Consensus 454 ~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 454 VI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred hc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 32 3443 34456788888999999999999988 2356777777777653 23445888889999998776688888
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 704 YTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 704 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
|......-...|.-+.+-.++.+.++
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777666788998888888877665
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.98 E-value=1.1e+02 Score=34.46 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 004632 536 IDTALTDMYAKCGDLQTAQRVFDSMSE 562 (741)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (741)
.|..|+..|...|+.++|.+++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888888888888888888887764
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.72 E-value=93 Score=29.50 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=78.6
Q ss_pred hcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCChhhHHHHHHHhhccCChh-hHH
Q 004632 243 KCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKM----LEVKEEPNLITLITVLGSCAGLGWLR-EGK 317 (741)
Q Consensus 243 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 317 (741)
+++++++|.+++.. =...+.+.|+...|-++..-+ .+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45566666666432 234455666665555543333 33466667666666666555443222 233
Q ss_pred HHHHHHHHh---C-CCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 004632 318 SVHCQIIRK---G-MGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTW 393 (741)
Q Consensus 318 ~~~~~~~~~---~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (741)
++.+.+++. + ..-.++.....++..|.+.|++.+|+..|-....++...+..++..+...|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 333333332 2 22246788899999999999999998887655444444433334333333333322
Q ss_pred CCCCCHHHH-HHHHHHhhccCChHHHHHHHHHHHHh
Q 004632 394 GLMPDSFSV-ASSLSACGNVGSLQLGLQIHGHVIKI 428 (741)
Q Consensus 394 g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~ 428 (741)
..| ...+--+...+++..|...+....+.
T Consensus 141 ------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ------DLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222 11222245566777777766655544
No 389
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.66 E-value=2.8e+02 Score=35.06 Aligned_cols=104 Identities=8% Similarity=-0.041 Sum_probs=58.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC--CC--------CCCHHHHH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PF--------PANGSIWG 671 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~--------~~~~~~~~ 671 (741)
+|....+.....|+++.|...+-.+.+.+ -+..+--.+..+...|+...|+.++++. .. .+.+...+
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 56666666666777777776666655543 2334445566677777777777777665 11 11122222
Q ss_pred HHHHH---------HHhcCC--HHHHHHHHHHHhccCCCCchhHHHHH
Q 004632 672 ALLNG---------CRIHKR--IDVMKTIEKELSVTGTNDNGYYTLLS 708 (741)
Q Consensus 672 ~l~~~---------~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 708 (741)
..+.. ..+.|+ ....++.|..+.+..|....-++.++
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 22111 223343 34667777888888886555555555
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.91 E-value=11 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=16.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 004632 470 MICGFYQNGNSLEAINLFHQMYLNC 494 (741)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~m~~~~ 494 (741)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566677777777777777766543
No 391
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.89 E-value=1.7e+02 Score=32.16 Aligned_cols=49 Identities=10% Similarity=0.208 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHhccC---CCCc-hhH-----HHHHHHHhhcCChHHHHHHHHHHH
Q 004632 680 HKRIDVMKTIEKELSVTG---TNDN-GYY-----TLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 680 ~g~~~~a~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
.|+..+.......+...- |+.. ..| ..+...|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677776666655554332 3322 223 344555778899999998887654
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.37 E-value=79 Score=29.06 Aligned_cols=59 Identities=8% Similarity=-0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.++..++...|++-++++--..++...|.|..+|+.-+.+++..=+..+|..-|.+.++
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34444555666666666666666666666666666666666666666666666665544
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.26 E-value=1.2e+02 Score=31.39 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=37.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccc--HHHHHHHhhcCCChhhHHHHHHHHHHhCCCCChh--hhhHHHHHhHhcCCh
Q 004632 71 MWNNFFEESILLYHKMIREQATISNFI--YPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDV--IQTSILCTYGEFGCL 146 (741)
Q Consensus 71 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 146 (741)
+..|+.+- ++.+.+.|..|+... -.+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44455433 344445566655432 222333444556654 444455556544422 112334455566666
Q ss_pred hHHHHHHccC
Q 004632 147 DDARKVFDKM 156 (741)
Q Consensus 147 ~~a~~~~~~~ 156 (741)
+.+..+++.-
T Consensus 82 ~~v~~Ll~~~ 91 (413)
T PHA02875 82 KAVEELLDLG 91 (413)
T ss_pred HHHHHHHHcC
Confidence 6666666543
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.58 E-value=1.1e+02 Score=28.93 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCccHH
Q 004632 568 WSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRI-----FGVEPDLQHY 638 (741)
Q Consensus 568 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 638 (741)
++...+.|..+|.+.+|.++-++... +.| +...+..++..+...|+--.+.+-++++.+ .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34445567777888888888887777 555 455666777777777776666666555533 4555554443
No 395
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.27 E-value=23 Score=33.95 Aligned_cols=82 Identities=6% Similarity=-0.139 Sum_probs=42.0
Q ss_pred HHHHhcCChHHHHHHHHhC--C--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 004632 643 DLLSRSGDIEGAFKMIHSM--P--FPA--NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN 716 (741)
Q Consensus 643 ~~~~~~~~~~~A~~~~~~~--~--~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 716 (741)
+-|.+.+++..|...|.+. . ..| +...|.+-..+-...|++..++.-..+++..+|.+..+|..=+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 3444555555555555444 1 111 223344444444445566666666666666666666666665666666666
Q ss_pred hHHHHHHH
Q 004632 717 WDEFGKVR 724 (741)
Q Consensus 717 ~~~A~~~~ 724 (741)
+++|...-
T Consensus 169 ~~~a~nw~ 176 (390)
T KOG0551|consen 169 FAEAVNWC 176 (390)
T ss_pred HHHHHHHH
Confidence 55444433
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.21 E-value=17 Score=27.79 Aligned_cols=52 Identities=6% Similarity=-0.156 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHhccCCC----C-----chhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 678 RIHKRIDVMKTIEKELSVTGTN----D-----NGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 678 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.+.||+.+|.+.+.+....... . ......++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566666665555555432211 1 12355567777788888888888887655
No 397
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.20 E-value=18 Score=21.62 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=8.0
Q ss_pred HHHHHHhhcCChHHHHHH
Q 004632 706 LLSNIYAEEGNWDEFGKV 723 (741)
Q Consensus 706 ~l~~~~~~~g~~~~A~~~ 723 (741)
.++-.+...|++++|.++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344444444444444444
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.13 E-value=21 Score=25.98 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 004632 578 HGQLNDAASLFKQMLDSGIKPNE--VTFMNILWACSHSGSVEEGKFY 622 (741)
Q Consensus 578 ~~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~ 622 (741)
..+.++|+..|+...+.-..|.. .++..++.+|+..|++.+.+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543222211 1444555555555555554443
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.22 E-value=39 Score=27.15 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcCCcchhHHHH
Q 004632 382 EALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSL 439 (741)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 439 (741)
+..+-++.+..-++.|++......+.+|.+.+++..|.++++.+...-.....+|..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445566666778899999999999999999999999999887765443333344333
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.09 E-value=1.3e+02 Score=28.66 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHc-CCCCCchhHHHHHHHHHhcCCHHHHHHHHHh
Q 004632 495 LEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISY-GVRKDIYIDTALTDMYAKCGDLQTAQRVFDS 559 (741)
Q Consensus 495 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (741)
..++..+...++..++..+++.+-.++++..... ++..|...|..+++.....|+..-...+.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3455555555566666666666666655555443 4445555555555555555555555555443
No 401
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.80 E-value=1.2e+02 Score=28.27 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=26.2
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 004632 653 GAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTL 706 (741)
Q Consensus 653 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 706 (741)
.-+++.+.| ....+-.+|..--+++..-++++.-+....++++.+-.|.++|+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 334444444 223344445555555555555555555555555555444444444
No 402
>PRK10941 hypothetical protein; Provisional
Probab=64.29 E-value=31 Score=32.70 Aligned_cols=61 Identities=10% Similarity=-0.142 Sum_probs=31.3
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 004632 642 VDLLSRSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNG 702 (741)
Q Consensus 642 ~~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 702 (741)
-.+|.+.++++.|+.+.+.+ . .|.++.-+.--+..+.+.|.+..|..-++..++.-|+++.
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34455555555555555555 2 2333334444444555555555555555555555555553
No 403
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.99 E-value=56 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHH
Q 004632 445 KCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEA 483 (741)
Q Consensus 445 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 483 (741)
..|+.+.|.+++..+. ..+..|..++.++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666667777766666654444
No 404
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.58 E-value=1.3e+02 Score=28.29 Aligned_cols=160 Identities=10% Similarity=0.013 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--------CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHH---Hc-CCCCCHHHHHH
Q 004632 539 ALTDMYAKCGDLQTAQRVFDSMS--------ERNVVSWSAM-IDCYGMHGQLNDAASLFKQML---DS-GIKPNEVTFMN 605 (741)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~---~~-~~~p~~~~~~~ 605 (741)
-++.++.+.|.+.+|..+.+.+. +++..+...+ -.+|-..++..++..-+..++ .. -++|....-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 35667778888888887766544 1332221111 123333334443333333222 11 13333333333
Q ss_pred HHH--HHhccCCHHHHHHHHHHHHH--cCCCCCccHHHH---HHHHHHhcCChHHHHHHHHhC---C--CCCCHHHHHHH
Q 004632 606 ILW--ACSHSGSVEEGKFYFNAMRI--FGVEPDLQHYAC---MVDLLSRSGDIEGAFKMIHSM---P--FPANGSIWGAL 673 (741)
Q Consensus 606 ll~--~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~---~--~~~~~~~~~~l 673 (741)
++. ..|...++..|-.+|-+..+ .....+...... ++-.-...+..++...++..- + ......+....
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~av 289 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAV 289 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHH
Confidence 444 24566788888888887776 222333332222 222222345566666555433 1 11222333333
Q ss_pred HHHHH--hcCCHHHHHHHHHHHhccCC
Q 004632 674 LNGCR--IHKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 674 ~~~~~--~~g~~~~a~~~~~~~~~~~p 698 (741)
..++. ...+++.|+.-|+.-+..+|
T Consensus 290 aea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 290 AEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 33332 23356677666665554444
No 405
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.25 E-value=1.9e+02 Score=29.82 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=102.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCCc--cHHH
Q 004632 571 MIDCYGMHGQLNDAASLFKQMLDS-GIKPN-------EVTFMNILW-ACSHSGSVEEGKFYFNAMRIFGVEPDL--QHYA 639 (741)
Q Consensus 571 l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-------~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 639 (741)
++.+-.-.|++.+|++-...|.+- .-.|. ......++. .|...+.++.|..-|....+.--..|. ..-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344445679999999988888762 11233 122344455 456678899999999888773223332 2333
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC----CCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------CchhH
Q 004632 640 CMVDLLSRSGDIEGAFKMIHSMPFP----ANGS-----IWGALLNGCRIHKRIDVMKTIEKELSVTGTN------DNGYY 704 (741)
Q Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~ 704 (741)
.+...|.+.|+.+.-.++++.++-+ -... .+...+-.....+++.+|...+.+.++..-- .+-.+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 5677899999999999999988421 1111 2222233356889999999999988875511 11236
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 705 TLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 705 ~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
..|+.+....||..++.+...-..+
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHH
Confidence 6778888889999988876554433
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.87 E-value=12 Score=33.63 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=28.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 611 SHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
.+.++.+.+.+++.++...- +-....|-.+...-.+.|+++.|.+.+++.
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~ 55 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEV 55 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHH
Confidence 44566666666666665522 122445555566566666666666666665
No 407
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.77 E-value=92 Score=26.15 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=44.4
Q ss_pred hhHHHHHhHhcCChhHHHHHHccCCC---------CCceeHHHHHHHHHhCCCh-hHHHHHHHHhHHCCCCCChhhHHHH
Q 004632 133 QTSILCTYGEFGCLDDARKVFDKMTS---------RDVVSWSSIIASYFDNADV-SEGLKMFHSMVREGVEPDFVTMLSL 202 (741)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~l 202 (741)
.++++.-....+.+.....+++.+.. .+...|++++.+....... --+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555544555555555555554421 3445677777766544442 2345666667666667777777777
Q ss_pred HHHhccc
Q 004632 203 AEACGEL 209 (741)
Q Consensus 203 l~~~~~~ 209 (741)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766554
No 408
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.93 E-value=1.1e+02 Score=28.86 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHh----
Q 004632 471 ICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAK---- 546 (741)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 546 (741)
|.+++..|+|.+++...-+--+..-+..+.....-|-.|.+.+.+..+.++-..-....-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5556666666666554433322211111222222223344444444444444433222111222234444444332
Q ss_pred -cCCHHHHHHHH
Q 004632 547 -CGDLQTAQRVF 557 (741)
Q Consensus 547 -~g~~~~A~~~~ 557 (741)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45555555554
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.79 E-value=66 Score=26.33 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHhc--cCCCCchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632 685 VMKTIEKELSV--TGTNDNGYYTLLSNIYAEEGNWDEFGKVRSI 726 (741)
Q Consensus 685 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 726 (741)
.+.++|+.+.. ++..-+..|...+..+...|++++|.++|++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666654 4555667788888888888888888888874
No 410
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.34 E-value=73 Score=33.31 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCC-CchhHHHHHHHHh-hcCChHHHHHHHHHHHh-CCCccCCCC
Q 004632 674 LNGCRIHKRIDVMKTIEKELSVTGTN-DNGYYTLLSNIYA-EEGNWDEFGKVRSIMEV-TGLKKVPGY 738 (741)
Q Consensus 674 ~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~~ 738 (741)
+..+.+.|-+..|.++.+.+..++|. ||.....+++.|+ +..+|.=-+++++.... ..+...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~ 416 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF 416 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc
Confidence 33455667777777777777777776 6666666666655 44566655666665533 445555544
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.71 E-value=31 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004632 571 MIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNI 606 (741)
Q Consensus 571 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 606 (741)
+.-++.+.|+++.|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34456677777777777777777 56765544333
No 412
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.69 E-value=1.8e+02 Score=28.74 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHhcC---C---------HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 004632 563 RNVVSWSAMIDCYGMHG---Q---------LNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIF 629 (741)
Q Consensus 563 ~~~~~~~~l~~~~~~~~---~---------~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 629 (741)
.|+.+|-.++..--..- . .+.-+.+++++++. .|+. .....++..+.+..+.++..+-|+++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36788888886433221 1 35667788888885 5544 46667777888888888888889988885
Q ss_pred CCCCCccHHHHHHHHHHh---cCChHHHHHHHHhC-------CCCC----------CHH---HHHHHHHHHHhcCCHHHH
Q 004632 630 GVEPDLQHYACMVDLLSR---SGDIEGAFKMIHSM-------PFPA----------NGS---IWGALLNGCRIHKRIDVM 686 (741)
Q Consensus 630 ~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~-------~~~~----------~~~---~~~~l~~~~~~~g~~~~a 686 (741)
. +-+...|...++.... .-.+++...+|.+. .... ... ++..+...+.+.|..|.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3 2356667766665543 23456666666554 2111 011 223334445678888888
Q ss_pred HHHHHHHhccCC
Q 004632 687 KTIEKELSVTGT 698 (741)
Q Consensus 687 ~~~~~~~~~~~p 698 (741)
..+++.+++.+-
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 888888888764
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.40 E-value=2.2e+02 Score=29.39 Aligned_cols=120 Identities=11% Similarity=0.096 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 004632 496 EMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS---ERNVVSWSAMI 572 (741)
Q Consensus 496 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 572 (741)
..+......++..+ .|+...+..+++.+...+...+. +....++.... ..+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554433 67888888777776543211111 11222222111 11222233344
Q ss_pred HHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCCC
Q 004632 573 DCYG---MHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGS-----VEEGKFYFNAMRIFGVEP 633 (741)
Q Consensus 573 ~~~~---~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 633 (741)
.++. +.++.+.|+.++.+|.+.|..|....-..+..++...|. ..-|...++-....|.+-
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe 303 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPE 303 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcH
Confidence 4443 357899999999999999988876655555556554442 233455555555566543
No 414
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.32 E-value=2e+02 Score=28.86 Aligned_cols=122 Identities=12% Similarity=0.090 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCC----ccHHHHHHHH
Q 004632 578 HGQLNDAASLFKQMLDSGIKPNEVT--------FMNILWACSHSGSVEEGKFYFNAMRI-FGVEPD----LQHYACMVDL 644 (741)
Q Consensus 578 ~~~~~~A~~~~~~~~~~~~~p~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~----~~~~~~l~~~ 644 (741)
.+++.+|.++-+.....-..-|..+ |..+-.+|...|+...-..++..... ..+..| ....|.|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 3556666665555443211222222 22333344455665555555555444 222222 3455666677
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHH--HH----HHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004632 645 LSRSGDIEGAFKMIHSMPFPANGS--IW----GALLNGCRIHKRIDVMKTIEKELSVTGTN 699 (741)
Q Consensus 645 ~~~~~~~~~A~~~~~~~~~~~~~~--~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 699 (741)
|...+.++.|..+..+..+|.... -| .-++..-.-++++..|.+.+-++....|+
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 777777777777777774332211 11 11222234466777777777776666664
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.31 E-value=53 Score=27.70 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=43.0
Q ss_pred HHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 004632 183 MFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGD 246 (741)
Q Consensus 183 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 246 (741)
+.+.+.+.|++++..-. .++..+...++.-.|.++|+.+.+.++..+..|...-+..+...|=
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 44555667777665543 5666666676778888888888888887777666666666665553
No 416
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=59.24 E-value=1.9e+02 Score=28.57 Aligned_cols=76 Identities=8% Similarity=-0.014 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc---cCCHHHHHHHH
Q 004632 551 QTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSH---SGSVEEGKFYF 623 (741)
Q Consensus 551 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~---~~~~~~a~~~~ 623 (741)
+.-+.+++++.+ .+...+..++..+.+..+.+...+-++++... .|+ ...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344555655543 34556666777777777888888888888873 453 4466666664332 33566777777
Q ss_pred HHHHH
Q 004632 624 NAMRI 628 (741)
Q Consensus 624 ~~~~~ 628 (741)
.+.++
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 66654
No 417
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=58.23 E-value=46 Score=27.83 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=48.2
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHH
Q 004632 651 IEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDE 719 (741)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 719 (741)
.+.|.++.+-|+. ..............|++.-|.++.+.+...+|+|..+-...+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4567777777742 34444556667889999999999999999999999999999998887765443
No 418
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.02 E-value=31 Score=32.53 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=33.5
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 004632 647 RSGDIEGAFKMIHSM-P-FPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYY 704 (741)
Q Consensus 647 ~~~~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 704 (741)
+.|+.++|..+|+.+ . .|.++..+..++...-.+++.-+|..+|-+++...|.+..++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 456666666666655 2 233445555555555555666666666666666666665443
No 419
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=1e+02 Score=30.67 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHHcCCCCCccHH--------HHHHHHHHhcCChHHHHHHHHhC----
Q 004632 596 IKPNEVTFMNILWA--CSHSGSVEEGKFYFNAMRIFGVEPDLQHY--------ACMVDLLSRSGDIEGAFKMIHSM---- 661 (741)
Q Consensus 596 ~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~A~~~~~~~---- 661 (741)
+.|...+|..++.. +..++++.+|.++-+.....-...+..++ -.+...|...|+...-..++...
T Consensus 120 ~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 120 LPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 33344566666553 44567888888877766552222233333 33344556667766655555433
Q ss_pred CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------CchhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 004632 662 PFP----ANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTN------DNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTG 731 (741)
Q Consensus 662 ~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 731 (741)
... -.....+.+++.+...+.++.|.....+.. .|+ -+.+.+.++.+.+-+++++.|.+++-....+.
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 222 234466888888999999999999987764 233 22457788999999999999999988776543
No 420
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=57.08 E-value=87 Score=25.53 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHhc--cCCCCchhHHHHHHHHhhcCChHHHHHHHH
Q 004632 686 MKTIEKELSV--TGTNDNGYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 686 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
..++|..+.. ++..-+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555544 445566678888888888899998888886
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.96 E-value=2.2e+02 Score=28.64 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHH-hcCChHHHHHHHHhC
Q 004632 607 LWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLS-RSGDIEGAFKMIHSM 661 (741)
Q Consensus 607 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 661 (741)
+..+.+.|-+..|.++.+-+...+..-|+.....+++.|+ +.++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3456677777777777777777554445555555666554 666666666666654
No 422
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.95 E-value=2.3e+02 Score=28.50 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC------CchHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004632 435 VQSSLIDMYSKCGFKNLAYLLFERIQQK------SVVMWNSMICGFYQNGNSLEAINLFHQMYLN 493 (741)
Q Consensus 435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 493 (741)
.+.-+..-|..+|+++.|.+.|.+.+.- ....|-.+|..-...|+|........+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 5677888889999999999999885532 2234556666667778888877777766553
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.00 E-value=43 Score=25.59 Aligned_cols=27 Identities=11% Similarity=-0.149 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccC
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSVTG 697 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 697 (741)
..+.......|++++|...+++++++-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 344555677788888888888887644
No 424
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.00 E-value=4.1e+02 Score=30.93 Aligned_cols=255 Identities=11% Similarity=-0.034 Sum_probs=128.3
Q ss_pred HHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHHHhcCCC
Q 004632 150 RKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKI 229 (741)
Q Consensus 150 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (741)
..+...+..++...-...+..+.+.+.. ++...+...... ++...-...+.++.+.++.......+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 3444445566666666666666666543 344444444422 33333334444444332211112222233322 4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 004632 230 DGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAG 309 (741)
Q Consensus 230 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 309 (741)
|..+....+..+...+.- ....+...+..++...-...+.++.+.+..+. +.... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 555555555555443321 12234455555666655666666665544322 11221 13444444555555555
Q ss_pred cCChhh-HHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHH-HHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHH
Q 004632 310 LGWLRE-GKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECE-KVIHAIGERNILSWNMLISEYARKGMSKEALELL 387 (741)
Q Consensus 310 ~~~~~~-a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 387 (741)
.+..+. +...+..+.+. +++.+....+..+...|..+.+. .+...+..++...-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~D----~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTGD----PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhcC----CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 554332 22333333322 45677777777888777765442 34444555565555556666766665 3455565
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 004632 388 VQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIK 427 (741)
Q Consensus 388 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (741)
..+.+ .|+...-...+.++.+......+...+..+.+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55554 45666666666777665444456666655555
No 425
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.76 E-value=89 Score=29.43 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=23.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHH
Q 004632 67 IKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGDLGSGEKVHGRIIK 123 (741)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 123 (741)
|++++.-++|.+++.+.-+--+..-+........=|-.|.+.|.+..+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555554443332211111111222223334444555554444444443
No 426
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.70 E-value=1.6e+02 Score=26.03 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred HhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC------------CCccchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004632 22 VTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE------------PDSFMWAVLIKCYMWNNFFEESILLYHKMIRE 89 (741)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 89 (741)
++|+.+|+..++.++..+.+..-...-...+-.++. -+....-.-++.|-+.|+|...=.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred CCCCCcc--cHHHHHHHhhcC--CChhhHHHHHHHHHHhCCCCC-------hhhhhHHHHHhHhcCChhHHHHHHccCCC
Q 004632 90 QATISNF--IYPSVLRACSSL--GDLGSGEKVHGRIIKCGFDKD-------DVIQTSILCTYGEFGCLDDARKVFDKMTS 158 (741)
Q Consensus 90 ~~~~~~~--~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (741)
--.+..- ....+..++.+. .++.--.-.|.+-.....+.| ..+--+++-.|-+..++.+..++++.+.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------------CCceeHHHHHHHHHhCCChhHHHHHHHH
Q 004632 159 ------------------RDVVSWSSIIASYFDNADVSEGLKMFHS 186 (741)
Q Consensus 159 ------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 186 (741)
+--..-|.-...+.+.|+.+.|+.++++
T Consensus 161 l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 161 LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 427
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.58 E-value=2e+02 Score=27.24 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q 004632 367 WNMLISEYARKGMSKEALELLVQ 389 (741)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~ 389 (741)
+..+...|++.++.+.+.++.++
T Consensus 118 ~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 118 DRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Confidence 33344444444444444443333
No 428
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.56 E-value=1.6e+02 Score=26.86 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHH
Q 004632 567 SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP---NEVTFM--NILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACM 641 (741)
Q Consensus 567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 641 (741)
-++.|+--|.-...+.+|.+.|.+- .|+.| +..++. .-+......|+.+.|++....+-..-+.-|...+-.|
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHL 105 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHH
Confidence 3455554444444444444444432 23444 222222 2344556667777776666655432222232222222
Q ss_pred HH----HHHhcCChHHHHHHHHhC
Q 004632 642 VD----LLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 642 ~~----~~~~~~~~~~A~~~~~~~ 661 (741)
.. =+.|.|..++|+++.+.-
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11 134566666666666554
No 429
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.48 E-value=31 Score=32.69 Aligned_cols=77 Identities=6% Similarity=-0.043 Sum_probs=48.6
Q ss_pred CCCccHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 004632 632 EPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGA-LLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLS 708 (741)
Q Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 708 (741)
..|+..|...+..-.+.|.+.+...++.++ ..|.+...|-. -..-+...++++.+..++.+.+..+|++|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 345555555555445555666666666555 44555555533 222356778888888888888888888887765443
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.88 E-value=33 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=13.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
-...++.++...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445555555555555555555443
No 431
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.84 E-value=1.5e+02 Score=29.77 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=44.8
Q ss_pred hhHHHHHHHHccCChhhHHHhhccCCC------CCccchHHHHHHHHhcCChhHHHHHHHHHHhc
Q 004632 31 ASTRLIESYAEMGSLRSSRLVFDTFKE------PDSFMWAVLIKCYMWNNFFEESILLYHKMIRE 89 (741)
Q Consensus 31 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 89 (741)
...-+.+.|...|+++.|.+.+.+.++ ..+..|-.+|..-...|+|.....+-.+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 446677889999999999999998654 23456777777777888888888777776543
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.65 E-value=46 Score=29.82 Aligned_cols=20 Identities=0% Similarity=-0.233 Sum_probs=7.1
Q ss_pred HhcCCHHHHHHHHHHHhccC
Q 004632 678 RIHKRIDVMKTIEKELSVTG 697 (741)
Q Consensus 678 ~~~g~~~~a~~~~~~~~~~~ 697 (741)
...|+.++|....+++....
T Consensus 155 ~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 155 ALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 33333333333333333333
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.54 E-value=83 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.307 Sum_probs=17.9
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHh
Q 004632 62 MWAVLIKCYMWNNFFEESILLYHKMIR 88 (741)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 88 (741)
-|..++.-|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466666666666777777776666654
No 434
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.08 E-value=77 Score=32.09 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=12.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 004632 641 MVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 641 l~~~~~~~~~~~~A~~~~~~~ 661 (741)
|++..+-.|++..|+++++.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc
Confidence 444555566666666666655
No 435
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=51.96 E-value=3e+02 Score=28.64 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh--cCChHHHHHHHHhC--CCCCCHHHH
Q 004632 596 IKPNEVTF-MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR--SGDIEGAFKMIHSM--PFPANGSIW 670 (741)
Q Consensus 596 ~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~--~~~~~~~~~ 670 (741)
..|+..++ +.++.-+.+.|-.++|...+..+... ++|+...|..+++.=.. .-+..-+.++++.+ .+..++..|
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLW 533 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHH
Confidence 34555443 34555666777777788877777663 24566666666654221 12366677777777 345788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSV-TGTND 700 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~ 700 (741)
..++..-...|..+.+-.++-++.+ ++|..
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 8888888888888888887776664 45543
No 436
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.80 E-value=81 Score=25.48 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=37.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632 660 SMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL 707 (741)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 707 (741)
.+..-|++.+....+++|++-+|+..|..+++-+...-+....+|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 336778999999999999999999999999998876665544444444
No 437
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.48 E-value=83 Score=24.87 Aligned_cols=28 Identities=7% Similarity=0.242 Sum_probs=24.4
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 004632 162 VSWSSIIASYFDNADVSEGLKMFHSMVR 189 (741)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (741)
.-|..++..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4688899999999999999999998876
No 438
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.38 E-value=60 Score=30.45 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=46.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 673 LLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+=.++...++++.|....++.+.++|+++.-+..-+-+|.+.|-+.-|++-++...+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 334567788889999999999999999888888888889999988888888776444
No 439
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.19 E-value=2e+02 Score=26.43 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=30.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004632 555 RVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNE 600 (741)
Q Consensus 555 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 600 (741)
.+|+-..+|.+.....++..+. .+++++|.+++.++.+.|..|..
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 3444444577777777776544 46788888888888888877744
No 440
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.95 E-value=48 Score=29.68 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=39.5
Q ss_pred HhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 610 CSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
.....+.+......+.+.+ ....|++..|..++.++...|+.++|.+..+++
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3355666666655555555 446789999999999999999999999998888
No 441
>PRK09857 putative transposase; Provisional
Probab=49.41 E-value=97 Score=29.97 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCCcc
Q 004632 671 GALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGLKK 734 (741)
Q Consensus 671 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 734 (741)
..++......++.++..++++.+.+..|+.......++.-+.+.|.-+++++...+|+..|+..
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444566777767777777766667666667788888888888888888888998888763
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.38 E-value=2.4e+02 Score=26.79 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=19.7
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004632 532 KDIYIDTALTDMYAKCGDLQTAQRVFDSMS 561 (741)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 561 (741)
-++.....+...|.+.|++.+|+..|-.-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 356677778888888888888887765433
No 443
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.43 E-value=4e+02 Score=29.07 Aligned_cols=63 Identities=0% Similarity=-0.079 Sum_probs=39.1
Q ss_pred ChhhhhHHHHHhHhcCChhHHHHHHccCCCCC-ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCC
Q 004632 129 DDVIQTSILCTYGEFGCLDDARKVFDKMTSRD-VVSWSSIIASYFDNADVSEGLKMFHSMVREGVE 193 (741)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 193 (741)
....+..|++.+ |.=+.+...++++++.. . ...+..+++++...|-.+...-+.+.+....+.
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344555555544 44556666777776654 3 567788888888888776666665655554443
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.21 E-value=1.5e+02 Score=24.22 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHh
Q 004632 315 EGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHA 358 (741)
Q Consensus 315 ~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 358 (741)
.+..+|..|...|+.-..+.++...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888999998888777778888888888888888888888764
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=47.10 E-value=2.8e+02 Score=26.89 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHH
Q 004632 579 GQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658 (741)
Q Consensus 579 ~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (741)
--+.+|+++|++..+.| ..+|+. -..+...|...+| +.+.+...-..+-..|.-+..+.|+..+|.+.+
T Consensus 230 ~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~da------~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHEA------QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchhh------hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34567777777776643 222321 1122222222222 222222222333445666667889999999999
Q ss_pred HhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCCchhHHH
Q 004632 659 HSM-PFPANGS---IWGALLNGCRIHKRIDVMKTIEKELSVTG-TNDNGYYTL 706 (741)
Q Consensus 659 ~~~-~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~ 706 (741)
+++ +..|-.. ...+++.+|.+..-+.+...++-+.-++. |.++.+.+.
T Consensus 299 RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 299 RDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
Confidence 888 3334322 34678888888777777777766665554 555554433
No 446
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=46.90 E-value=48 Score=20.17 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 702 GYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 702 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
.+|..|+.+-...++++.|.+-|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888889999998888887655
No 447
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.34 E-value=3.6e+02 Score=27.95 Aligned_cols=119 Identities=8% Similarity=-0.147 Sum_probs=73.2
Q ss_pred hccCCHHHHHHHHHHHHH-cCCCCCccH--------HHHHHHHHHhcCChHHHHHHHHhC-C--CCCCHHHH--HHHHHH
Q 004632 611 SHSGSVEEGKFYFNAMRI-FGVEPDLQH--------YACMVDLLSRSGDIEGAFKMIHSM-P--FPANGSIW--GALLNG 676 (741)
Q Consensus 611 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~~-~--~~~~~~~~--~~l~~~ 676 (741)
.-.|++.+|++-...|.+ ..-.|.+.. ...++-.+...+.++.|..-|..+ + ...+...+ ..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 456999999999999988 222333211 112333344667888888877766 2 22233332 334455
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCc-------hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 677 CRIHKRIDVMKTIEKELSVTGTNDN-------GYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 677 ~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
|...|+.+.-.++++.+-..+.... .++...+-..+..|++.||..++.+-.+
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 7778887777666666443332211 2455555566789999999999887655
No 448
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.90 E-value=2.1e+02 Score=27.86 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHhcC-------CCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHH-HHHHHHHH-H
Q 004632 547 CGDLQTAQRVFDSMS-------ERNVVSWS--AMIDCYGMHGQLNDAASLFKQMLD-----SGIKPNEV-TFMNILWA-C 610 (741)
Q Consensus 547 ~g~~~~A~~~~~~~~-------~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~-~~~~ll~~-~ 610 (741)
.++.++|.++++++. +|+.+.|. .+.+++...|+..++.+.+++..+ .|++|+.. .|+.+-.- |
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYy 167 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYY 167 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHH
Confidence 345555555555444 24444333 344455566777777777766665 45666544 44444443 3
Q ss_pred hccCCHH
Q 004632 611 SHSGSVE 617 (741)
Q Consensus 611 ~~~~~~~ 617 (741)
-..|++.
T Consensus 168 k~~~d~a 174 (380)
T KOG2908|consen 168 KKIGDFA 174 (380)
T ss_pred HHHHhHH
Confidence 3334443
No 449
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.47 E-value=2.5e+02 Score=25.97 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=55.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChH
Q 004632 576 GMHGQLNDAASLFKQMLDSGIK-PNEV--TFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIE 652 (741)
Q Consensus 576 ~~~~~~~~A~~~~~~~~~~~~~-p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 652 (741)
...|+++.|+++.+-+++.|+. |+.. ++-.++. ++.........+.|.+.++.....+...-..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~~~~~~l~~~----- 160 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFLRVFLDLTTE----- 160 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHHHHHHHHHhc-----
Confidence 4568888888888888887754 3321 2222210 2222222233334544444332222211111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH---------HhcCCHHHHHHHHHHHhccCCCCc
Q 004632 653 GAFKMIHSMPFPANGSIWGALLNGC---------RIHKRIDVMKTIEKELSVTGTNDN 701 (741)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~p~~~ 701 (741)
.+|+.+.....+..++..+ ...++.+.|...++++.+++|+-.
T Consensus 161 ------~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 161 ------WDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred ------CCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 0222222333455555555 245678899999999999998744
No 450
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.91 E-value=37 Score=32.20 Aligned_cols=68 Identities=15% Similarity=-0.009 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH-HHHHHhhcCChHHHHHHHHHHHh
Q 004632 662 PFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTL-LSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 662 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+++.|+..|...+....+.|.+.+...++.++...+|.|...|.. -..-|...++.+.+..++.+-++
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 467788899999888888999999999999999999999988776 44456778999999998884333
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.64 E-value=58 Score=33.16 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=75.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcC
Q 004632 572 IDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNI-LWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSG 649 (741)
Q Consensus 572 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 649 (741)
+..+...+.++.|..++.++++ +.||...|... ..++.+.+++..|+.=+..+.+.. |+ ...|-.=+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 4455677899999999999999 78987755444 368999999999999888888743 33 333444455666777
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004632 650 DIEGAFKMIHSM-PFPANGSIWGALLNGCR 678 (741)
Q Consensus 650 ~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~ 678 (741)
++.+|+..|+.. ...|+..-....+.-|-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 888999999888 56677666655555543
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.61 E-value=35 Score=27.91 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=10.3
Q ss_pred CChhHHHHHHHHHHhcCCCCC
Q 004632 74 NFFEESILLYHKMIREQATIS 94 (741)
Q Consensus 74 ~~~~~a~~~~~~m~~~~~~~~ 94 (741)
|.-.+|-.+|..|++.|.+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 334445555555555554444
No 453
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.68 E-value=60 Score=21.00 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=19.4
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhhhhHHHH
Q 004632 107 SLGDLGSGEKVHGRIIKCGFDKDDVIQTSILC 138 (741)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (741)
+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555566666666666666666666655543
No 454
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=43.58 E-value=1.7e+02 Score=23.51 Aligned_cols=56 Identities=11% Similarity=-0.114 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh-------ccCCCCch----hHHHHHHHHhhcCChHHHHHHHHHH
Q 004632 672 ALLNGCRIHKRIDVMKTIEKELS-------VTGTNDNG----YYTLLSNIYAEEGNWDEFGKVRSIM 727 (741)
Q Consensus 672 ~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 727 (741)
.|..++...|++++++...++++ +++.+... +...-+.++...|+.++|+..|+..
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34444455555555444444433 33333222 3444556677788888888877753
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.44 E-value=2.3e+02 Score=27.29 Aligned_cols=42 Identities=10% Similarity=0.229 Sum_probs=21.3
Q ss_pred HHHHHhHHCCCCCChhhHHHHHHHhcccCChhhHHHHHHHHH
Q 004632 182 KMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVL 223 (741)
Q Consensus 182 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 223 (741)
++++.|...++.|....|..+.-.+.+.=.+..+..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344445555555555555555444444444455555555544
No 456
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.26 E-value=90 Score=20.18 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=17.0
Q ss_pred HhCCChhHHHHHHHHhHHCCCCCChhhHHHHH
Q 004632 172 FDNADVSEGLKMFHSMVREGVEPDFVTMLSLA 203 (741)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 203 (741)
.+.|-.+++..+++.|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555555555555555555555444443
No 457
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.10 E-value=4.9e+02 Score=28.66 Aligned_cols=622 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccH-HHHHHHhhcCCChhhHHHHHHHHH-HhCCCCChhhhhHHHHHhHhcCChhHHHHH
Q 004632 75 FFEESILLYHKMIREQATISNFIY-PSVLRACSSLGDLGSGEKVHGRII-KCGFDKDDVIQTSILCTYGEFGCLDDARKV 152 (741)
Q Consensus 75 ~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (741)
...+.+...+.+.+....|+..+- ..+-..|.-.|.+++|...--..- ...+.++...+..++.-+... -.+.+.+.
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~ 116 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASET 116 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHH
Q ss_pred HccCCCCCce------eHHHHHHHHHhCCChhHHHHHHHHhHHCC--------CCCChhhHHHHHHHhcccCC-hhhHHH
Q 004632 153 FDKMTSRDVV------SWSSIIASYFDNADVSEGLKMFHSMVREG--------VEPDFVTMLSLAEACGELCS-LRPARS 217 (741)
Q Consensus 153 ~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~~~-~~~a~~ 217 (741)
++.-.+.+.. ..+.++..+...+++..|+.+.-+..+.+ -..+......++..+....+ .+--.+
T Consensus 117 ~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~ 196 (929)
T KOG2062|consen 117 YKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNK 196 (929)
T ss_pred hcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 004632 218 IHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNL 297 (741)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 297 (741)
++..+++.-.+....-|..+.++|....+.+.+.++++++.+.+......-|.......-.++-+....+-....-..+.
T Consensus 197 vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de 276 (929)
T KOG2062|consen 197 VLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDE 276 (929)
T ss_pred HHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHccccccccc
Q ss_pred hhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChHHHHHHHHhcCCCCcccHHHHHHHHHHc
Q 004632 298 ITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGERNILSWNMLISEYARK 377 (741)
Q Consensus 298 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 377 (741)
.....+++.+ .-..........+.++++.+--.--=-+-.-++..+.++.+-+-.-.
T Consensus 277 ~p~~kii~IL-----------------------SGe~tik~~l~FL~~~N~tD~~iL~~iK~s~r~sv~H~A~~iAN~fM 333 (929)
T KOG2062|consen 277 KPMEKIISIL-----------------------SGEETIKLYLQFLLRHNNTDLLILEEIKESVRNSVCHTATLIANAFM 333 (929)
T ss_pred ChHHHHHHHh-----------------------cCchHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred CCchHHHHHHHHHHHC-CCCCCHHHHHHHHHH-hhccCChHHHHHHHHHHHHh----cCCcchhHHHHHHHHHhcCCHHH
Q 004632 378 GMSKEALELLVQMQTW-GLMPDSFSVASSLSA-CGNVGSLQLGLQIHGHVIKI----DCKDEFVQSSLIDMYSKCGFKNL 451 (741)
Q Consensus 378 ~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 451 (741)
.--...-.+++.=... +-..+..-|+..... ....|+..++.+++...+.. +.....--..+.-++...|..+.
T Consensus 334 h~GTT~D~FlR~NL~WlskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~ 413 (929)
T KOG2062|consen 334 HAGTTSDTFLRNNLDWLSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG 413 (929)
T ss_pred hcCCcchHHHHhchhHHhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc
Q ss_pred HHHHHHhccCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcC
Q 004632 452 AYLLFERIQQK--SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYG 529 (741)
Q Consensus 452 a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (741)
..+.+...... +...-.-.--++.-.|.-..-.++|+.++..-...+..+-.+..-+..-..--..-.+.+++|...-
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya 493 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYA 493 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHh
Q ss_pred CCC---CchhHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004632 530 VRK---DIYIDTALTDMYAKCGDLQTAQRVFDSMS-ERNVV----SWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEV 601 (741)
Q Consensus 530 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 601 (741)
... .+.---.+.-++.--|+-++|..+.+++. ..|+. -.-++..+|+-.|+.....+++.-.... ..-|..
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVr 572 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVR 572 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHH
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004632 602 TFMNILWACSHSGSVEEGKFYFNAMRI-FGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIH 680 (741)
Q Consensus 602 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 680 (741)
-+..+.-++.-..+++....+..-+.+ .+...--..--.|+-+|.-.| ..+|+.+++.|-..|..-+....+
T Consensus 573 RaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D~~~fVRQgAl------ 645 (929)
T KOG2062|consen 573 RAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSDPVDFVRQGAL------ 645 (929)
T ss_pred HHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcChHHHHHHHHH------
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHHhCCC
Q 004632 681 KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
...|.-+.++-.+..|+-..+-..+. -.=..++++...-|-....+|+
T Consensus 646 --Ia~amIm~Q~t~~~~pkv~~frk~l~--kvI~dKhEd~~aK~GAilAqGi 693 (929)
T KOG2062|consen 646 --IALAMIMIQQTEQLCPKVNGFRKQLE--KVINDKHEDGMAKFGAILAQGI 693 (929)
T ss_pred --HHHHHHHHhcccccCchHHHHHHHHH--HHhhhhhhHHHHHHHHHHHhhh
No 458
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.93 E-value=96 Score=32.93 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHHH
Q 004632 677 CRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIME 728 (741)
Q Consensus 677 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 728 (741)
|....+.+.|.++++++.+.+|.++-.-.....+....|+-++|+.....++
T Consensus 404 YL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 404 YLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444443
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=3.4e+02 Score=26.48 Aligned_cols=89 Identities=18% Similarity=0.017 Sum_probs=38.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHH----HCCCCCCHHHHHHHHHH-hhccCChHHHHHHHHHHHHhcCCcch-----hHHHH
Q 004632 370 LISEYARKGMSKEALELLVQMQ----TWGLMPDSFSVASSLSA-CGNVGSLQLGLQIHGHVIKIDCKDEF-----VQSSL 439 (741)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l 439 (741)
....|++-|+-+.|++.+++.. ..|.+.|..-+..-+.. +....-+.+-++..+.+.+.|-+-+. +|..+
T Consensus 110 kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl 189 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL 189 (393)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH
Confidence 3344555555555554444432 22444454443333322 23333333444444444444443222 33322
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 004632 440 IDMYSKCGFKNLAYLLFERIQ 460 (741)
Q Consensus 440 ~~~~~~~~~~~~a~~~~~~~~ 460 (741)
-. ....++.+|-.+|-...
T Consensus 190 y~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 190 YC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred HH--HHHHhHHHHHHHHHHHc
Confidence 22 22345666666665543
No 460
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.86 E-value=1.3e+02 Score=23.05 Aligned_cols=35 Identities=6% Similarity=-0.189 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 004632 673 LLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLL 707 (741)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 707 (741)
|.-.+...|+.+.+.+-|+.-..+.|++..+.+.|
T Consensus 78 LGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 33344555555555555555555555555444333
No 461
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.80 E-value=2.6e+02 Score=31.26 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=111.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 004632 477 NGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRV 556 (741)
Q Consensus 477 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (741)
+.++++.+.+.+...- +. .++|..+.+.|-.+-|+.+.+. ..+ -......+|+.+.|.+.
T Consensus 606 ~k~ydeVl~lI~ns~L----vG----qaiIaYLqKkgypeiAL~FVkD---------~~t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNL----VG----QAIIAYLQKKGYPEIALHFVKD---------ERT---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCc----cc----HHHHHHHHhcCCcceeeeeecC---------cch---heeeehhcCCHHHHHHH
Confidence 4556666655543221 11 1234444556666666554332 111 12345678999999998
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCcc
Q 004632 557 FDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQ 636 (741)
Q Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 636 (741)
-.++. +..+|..|.....+.|+.+-|+..|++... |..|--.|.-.|+.++..++.+.+... -|..
T Consensus 666 akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r---~D~~ 731 (1202)
T KOG0292|consen 666 AKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR---NDAT 731 (1202)
T ss_pred HHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---hhhH
Confidence 88775 455799999999999999999999988765 223333566788888887776665442 2322
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 004632 637 HYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEKELSVTG 697 (741)
Q Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 697 (741)
.. . ..-.-.|+.++=.++++..+..|-. | .....+|.-++|.++.++.....
T Consensus 732 ~~--~-qnalYl~dv~ervkIl~n~g~~~la--y----lta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 732 GQ--F-QNALYLGDVKERVKILENGGQLPLA--Y----LTAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HH--H-HHHHHhccHHHHHHHHHhcCcccHH--H----HHHhhcCcHHHHHHHHHhhcccc
Confidence 21 1 1112358999999999988643321 1 12346788899999988877633
No 462
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.71 E-value=2.9e+02 Score=25.55 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=34.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004632 606 ILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRI 679 (741)
Q Consensus 606 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 679 (741)
++.++...|+.+.|..+++.+.- +++ ......+... ..++.+.+|..+.+....+.....+..++..+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44455556666666666655321 111 1222222222 4456677777666666433334455555555543
No 463
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.67 E-value=1.6e+02 Score=22.62 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 617 EEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 617 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
....+.++++...+....+.....|.-.|.+.|+.+.|.+-|+.-
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 344556666666444444445556777777778777777777655
No 464
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=41.66 E-value=3.8e+02 Score=26.90 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=110.2
Q ss_pred cccHHhHHHHHHHHHH-----cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004632 512 IGQLEKGKWVHHKLIS-----YGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAAS 586 (741)
Q Consensus 512 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 586 (741)
.++.+.|.+-+-...+ .+...+..++..+++.|...++|+.--+.+.- ..-+.|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~--------------Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRL--------------LSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHH--------------HHHHhhHHHHHHH
Confidence 5556665544333221 33344455556666666666666654332221 1234566666554
Q ss_pred HH--HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 587 LF--KQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD---LQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 587 ~~--~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
.+ +-|.-..-.||..+-..++..+ +...+-.+-.. ...-..|...+...|++++|..++.+.
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tL-------------r~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETL-------------RTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHH-------------HHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 21 1122112345555544444432 22221111111 122335677888999999999999888
Q ss_pred CCCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-------hhHHHHHHHHhhcCChHHHHHHHHH
Q 004632 662 PFPA------N--GSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDN-------GYYTLLSNIYAEEGNWDEFGKVRSI 726 (741)
Q Consensus 662 ~~~~------~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 726 (741)
+... . ......-++.|...+|+-.|.-+-+++....-+++ .+|..+.....+.+.+=++.+.|+.
T Consensus 158 ~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yra 237 (439)
T KOG1498|consen 158 QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRA 237 (439)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3211 1 11223335668889999999998888876543333 3577888888888999999999998
Q ss_pred HHhCCC
Q 004632 727 MEVTGL 732 (741)
Q Consensus 727 ~~~~~~ 732 (741)
+-+-|-
T Consensus 238 iy~t~~ 243 (439)
T KOG1498|consen 238 IYDTGN 243 (439)
T ss_pred Hhcccc
Confidence 877543
No 465
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=40.93 E-value=4.2e+02 Score=27.24 Aligned_cols=177 Identities=10% Similarity=-0.036 Sum_probs=71.5
Q ss_pred ChhhhhHHHHHhHhcCChhHHHHHHccCCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHhcc
Q 004632 129 DDVIQTSILCTYGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGE 208 (741)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 208 (741)
+..+.....+++...++......+..-+..++.......+.++...+. .+...+....+ .++...-...+.+++.
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGE 173 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHh
Confidence 333444445555555554444444444444443333333333333221 12222222222 2344444444444444
Q ss_pred cCChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 004632 209 LCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVK-IEKRCTTSWTAMISCYNRSGWFQKALESFVK 287 (741)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 287 (741)
.+..+....+. .+ -...+..+-..-+.+....|. +.|...+.. ...++....-.+...+... ..+++++.+..
T Consensus 174 l~~~~a~~~L~-~a---l~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~ 247 (410)
T TIGR02270 174 LPRRLSESTLR-LY---LRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLRE 247 (410)
T ss_pred hccccchHHHH-HH---HcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHH
Confidence 44432222211 11 112344444445555555555 344433333 3333333333333333322 22355555555
Q ss_pred HHHCCCCCChhhHHHHHHHhhccCChhhHHHHHH
Q 004632 288 MLEVKEEPNLITLITVLGSCAGLGWLREGKSVHC 321 (741)
Q Consensus 288 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 321 (741)
+.+. + .+-...+.++.+.|+...+..+.+
T Consensus 248 ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 248 LLQA---A--ATRREALRAVGLVGDVEAAPWCLE 276 (410)
T ss_pred HhcC---h--hhHHHHHHHHHHcCCcchHHHHHH
Confidence 5432 1 144445555555555554444433
No 466
>PLN03025 replication factor C subunit; Provisional
Probab=40.35 E-value=2.8e+02 Score=27.29 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHhCCCCChhhhHHHHHHHHccCChhhHHHhhc
Q 004632 21 LVTGLHYDPPASTRLIESYAEMGSLRSSRLVFD 53 (741)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 53 (741)
...|+.-++.....++... .|+++.|...++
T Consensus 172 ~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq 202 (319)
T PLN03025 172 EAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQ 202 (319)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 3457777777777776653 477777777665
No 467
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.31 E-value=6.6e+02 Score=29.32 Aligned_cols=257 Identities=7% Similarity=-0.040 Sum_probs=146.5
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhcC
Q 004632 351 ECEKVIHAIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDC 430 (741)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 430 (741)
....+...+..++...-...+..+.+.+. +.+...+..+.. .+|...-...+.++...+........+...+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 33455566667777777777777777765 445555555553 234444444444444432211112223233322
Q ss_pred CcchhHHHHHHHHHhcCCHHHHHHHHHhccCCCchHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 004632 431 KDEFVQSSLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACS 510 (741)
Q Consensus 431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 510 (741)
++..+....+..+...+..+ ...+...+..+|+..-...+.++.+.+..+.. .... ..++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHH
Confidence 22234455555555433211 23445566667777666677777766554322 1221 3456666666666766
Q ss_pred ccccHHh-HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH-HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004632 511 NIGQLEK-GKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQ-RVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLF 588 (741)
Q Consensus 511 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 588 (741)
..+..+. +...+..+.. .++..+-...+.++.+.|..+.+. .+...+..++...-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 6665432 2333444432 456777788888899888776553 34455556777777777888877765 4566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 004632 589 KQMLDSGIKPNEVTFMNILWACSHSGSVEEGKFYFNAMRI 628 (741)
Q Consensus 589 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 628 (741)
-.+.+ .|+...-...+.++.+.+....+...+..+.+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66665 56766666677777665444567777776665
No 468
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.02 E-value=3e+02 Score=25.20 Aligned_cols=30 Identities=10% Similarity=-0.152 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGT 698 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 698 (741)
....++....+.|+.++|...+.+++...-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 444455566788888888888888876543
No 469
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=39.77 E-value=2.3e+02 Score=23.81 Aligned_cols=75 Identities=9% Similarity=-0.059 Sum_probs=40.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcC
Q 004632 272 YNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECG 347 (741)
Q Consensus 272 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 347 (741)
..+.+++...+.+++.+...+..++.. -...+....+.-+.+.-..+++.+...+....+..+...++....+.-
T Consensus 20 Al~L~~P~~ll~i~~~~~~~~~~~~~~-g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~ 94 (141)
T PF08625_consen 20 ALKLDHPFRLLKILKDLLETEEDEDSI-GSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTSHVAQRVLNAILKSH 94 (141)
T ss_pred HHhcCCcHHHHHHHHHHHhcccccccc-hHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 344556677777777777433333332 233344444444555566667777666655444555555555444433
No 470
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.62 E-value=1.9e+02 Score=22.79 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=19.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004632 544 YAKCGDLQTAQRVFDSMSERNVVSWSAMIDCYGMHGQLNDAASLFKQMLDS 594 (741)
Q Consensus 544 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 594 (741)
+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++..+
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 444555555522222222345544444422 3445555555555544443
No 471
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.15 E-value=3.8e+02 Score=26.27 Aligned_cols=81 Identities=15% Similarity=-0.052 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCC----CCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004632 616 VEEGKFYFNAMRIFGV----EPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKRIDVMKTIEK 691 (741)
Q Consensus 616 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 691 (741)
.+.|.+.|+.....+. ..++.....+.....+.|..++-..+++.....++......++.++....+.+....+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4456677777666311 334555555666666777666555555555555667777778888878888888888888
Q ss_pred HHhcc
Q 004632 692 ELSVT 696 (741)
Q Consensus 692 ~~~~~ 696 (741)
.+..-
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 87773
No 472
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.95 E-value=51 Score=25.79 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=17.0
Q ss_pred cccccccchHHHHHHHHHHHHhCCCCChhhhHHHHHHH
Q 004632 2 PLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRLIESY 39 (741)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 39 (741)
|.|+.|...+.|+.+.+=|..+| .-++...+.|-..+
T Consensus 69 D~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455555555555555444444 33444444443333
No 473
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.94 E-value=60 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004632 567 SWSAMIDCYGMHGQLNDAASLFKQMLD 593 (741)
Q Consensus 567 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 593 (741)
-.-.+|.++...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344566777777777777777776654
No 474
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.88 E-value=55 Score=30.99 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=37.8
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 004632 610 CSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-PFPA 665 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~ 665 (741)
..+.|+.++|..+|+.+.... +-.+....-++......+++-+|-+++-++ ...|
T Consensus 126 ~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 357799999999999998743 123555555666666666777787777776 4334
No 475
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.49 E-value=5.1e+02 Score=30.26 Aligned_cols=101 Identities=17% Similarity=0.073 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHH--------
Q 004632 602 TFMNILWACSHSG--SVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN-GSIW-------- 670 (741)
Q Consensus 602 ~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-------- 670 (741)
-+..++.+|.+.+ ++++|+....++++. +...|.+.++-+-+-.| ...|
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~--------------------~~~~ae~alkyl~fLvDvn~Ly~~ALG~YD 873 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE--------------------DPESAEEALKYLCFLVDVNKLYDVALGTYD 873 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc--------------------ChHHHHHHHhHheeeccHHHHHHHHhhhcC
Confidence 4556777887777 788888888887764 22222222222211011 1111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCChHHHHHHHHHH
Q 004632 671 --GALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM 727 (741)
Q Consensus 671 --~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 727 (741)
..++-|-..+.|..+-+-.++++.++.|.. .--.+=.+.|+|++|+..+.++
T Consensus 874 l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~-----rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 874 LELALMVAQQSQKDPKEYLPFLQELQKLPPLY-----RRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHhCChhh-----eeeeHhhhhCCHHHHHHHHHhh
Confidence 223334456678888888888888776542 2334556789999999887653
No 476
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.35 E-value=6.6e+02 Score=28.77 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 004632 366 SWNMLISEYARKGMSKEALELLVQMQTW 393 (741)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (741)
-|..|+..|...|+.++|++++.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778888888888888888888888763
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.19 E-value=2e+02 Score=24.34 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=38.8
Q ss_pred HhHHCCCCCChhhHHHHHHHhccc-CChhhHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCH
Q 004632 186 SMVREGVEPDFVTMLSLAEACGEL-CSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSKCGDL 247 (741)
Q Consensus 186 ~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 247 (741)
.+...|++++..-. .++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556766665543 334444433 45667888888888888777777766667766666654
No 478
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.14 E-value=1.7e+02 Score=30.62 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=49.6
Q ss_pred HhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 004632 22 VTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKE--PDSFMWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYP 99 (741)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 99 (741)
..|+..+......+. -...|+.++|+.+++.... .+..++..+. ++. |. ++...+.
T Consensus 195 ~Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~-----------------~~l--g~-~~~~~~~ 252 (484)
T PRK14956 195 IENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAIVFTDSKLTGVKIR-----------------KMI--GY-HGIEFLT 252 (484)
T ss_pred HcCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHHHhCCCCcCHHHHH-----------------HHh--CC-CCHHHHH
Confidence 457766666664444 3345888888888775321 1111222211 111 22 2444555
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhCCCCChh
Q 004632 100 SVLRACSSLGDLGSGEKVHGRIIKCGFDKDDV 131 (741)
Q Consensus 100 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (741)
.++.++...+....+..+++++.+.|..|...
T Consensus 253 ~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 253 SFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 66666666555677888888888888766544
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.96 E-value=1.8e+02 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.028 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 004632 366 SWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVG 413 (741)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 413 (741)
.-..++..+.+.++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344566666666666777777777777766666666655555554444
No 480
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.93 E-value=3.9e+02 Score=26.20 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=85.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 004632 574 CYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACS------HSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSR 647 (741)
Q Consensus 574 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (741)
.....+-++++..++++....+ .|........+.++- ..-+|.....+|+-+......| +.+.|.-+ +..+
T Consensus 265 ~lW~r~lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~ 341 (415)
T COG4941 265 SLWDRALIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAM 341 (415)
T ss_pred hhhhHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHH
Confidence 3444556788999999988876 488887777776542 2247888888999888755333 33444333 3444
Q ss_pred cCChHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 004632 648 SGDIEGAFKMIHSMPFPANGS----IWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGY 703 (741)
Q Consensus 648 ~~~~~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 703 (741)
..-.+.++..++-+...|... .+..-...+.+.|+.++|...|++++.+.++...-
T Consensus 342 ~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 342 REGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 555777888888774333222 23334555789999999999999999988876543
No 481
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.73 E-value=7.4e+02 Score=29.14 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=68.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 004632 603 FMNILWACSHSGSVEEGKFYFNAMRIFGVEPD----LQHYACMVDLLSRSGDIEGAFKMIHSMP-FPANGSIWGALLNGC 677 (741)
Q Consensus 603 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 677 (741)
|...++.+.+.+..+.+.++-..+++. .+++ ..+++.+.+-....|.+-+|...+-+-+ ......++..++-.+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 445556666667777777777666662 1222 3455666666667777777777665552 222334566666666
Q ss_pred HhcCCHH------------HHHH-HHHHHhccCCC-CchhHHHHHHHHhhcCChHHHHHH
Q 004632 678 RIHKRID------------VMKT-IEKELSVTGTN-DNGYYTLLSNIYAEEGNWDEFGKV 723 (741)
Q Consensus 678 ~~~g~~~------------~a~~-~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 723 (741)
.+.|.++ +... +++.+-+..|- .+..|..|---+...+|+.+|..+
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 6666543 3333 33333333333 334566665566677787777654
No 482
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=37.65 E-value=3.6e+02 Score=25.53 Aligned_cols=153 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004632 537 DTALTDMYAKCGDLQTAQRVFDSMS--ERNVVSWSAMIDCYGMHGQL-----NDAASLFKQMLDSGIKPNEVTFMNILWA 609 (741)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 609 (741)
...++..+.+.+....|..+.+.+. ..-..+...++......... ......+....+ +--....|..++..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~--ll~~f~~~l~Ivv~ 162 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVIS--LLQEFPEYLEIVVN 162 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHH--HHHcCcchHHHHHH
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhc
Q 004632 610 CSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM----PFPA-----NGSIWGALLNGCRIH 680 (741)
Q Consensus 610 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~~~~~~l~~~~~~~ 680 (741)
|.+.=+...-..+|+.+ | .|.. |..-|.+.|+.+.|-.++-=+ +... +......++......
T Consensus 163 C~RKtE~~~W~~LF~~l---g-~P~d-----Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 163 CARKTEVRYWPYLFDYL---G-SPRD-----LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHhhHHHHHHHHHHhc---C-CHHH-----HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHhccCCCC
Q 004632 681 KRIDVMKTIEKELSVTGTND 700 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~ 700 (741)
++++-+.++.+-+..++|.+
T Consensus 234 ~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 234 GDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred ccHHHHHHHHHHHHHhCccc
No 483
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.62 E-value=5.7e+02 Score=27.81 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=19.6
Q ss_pred cCChhhHHHHHHHHHHhCCCCCcchHHHHHHHHHHhcCChH
Q 004632 310 LGWLREGKSVHCQIIRKGMGPEYDYLGPALIEFYAECGKMS 350 (741)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 350 (741)
.|+...+.+....+. ++..+...++..+.+.|-++
T Consensus 310 ~~d~~~vL~~~~~~~------~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 310 EGDIESVLKEISSLF------DDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TS--GGGHHHHHHH--------HHHHHHHHHHHHHHTTSS-
T ss_pred ccCHHHHHHHHHHHc------cchhHHHHHHHHHHhcCccc
Confidence 567777766655432 45566677777777776655
No 484
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.31 E-value=5e+02 Score=27.01 Aligned_cols=58 Identities=10% Similarity=-0.021 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCChHHHHHHHHH
Q 004632 669 IWGALLNGCRIHKRIDVMKTIEKELSVTGTN--DNGYYTLLSNIYAEEGNWDEFGKVRSI 726 (741)
Q Consensus 669 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 726 (741)
.+..|..+++-+|++++|..++..+..+-|. ++.+...-..+-...|+...|+..+++
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHh
Confidence 5677888899999999999999888877663 333333333334467999999877663
No 485
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.21 E-value=1.1e+02 Score=22.87 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHH
Q 004632 14 TRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEES 79 (741)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 79 (741)
..++..+.+.|+ .+.. ..-..-+...+.+.|.++++-+++.....|..+.+++...|...-|
T Consensus 19 ~~v~~~L~~~~V-lt~~---~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV-FTPD---MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC-CCHH---HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 456666666664 2222 2233344556778888888888888888888888888777654433
No 486
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=36.95 E-value=6.6e+02 Score=28.32 Aligned_cols=140 Identities=12% Similarity=0.050 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHhccccHHhHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHh-------cCCCC
Q 004632 494 CLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVR--KDIYIDTALTDMYAKCGDLQTAQRVFDS-------MSERN 564 (741)
Q Consensus 494 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~ 564 (741)
++..+......++... .|+..++..+++.+...... .+.... ..+.+.+.+.+ -..+.
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~I-----------t~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDI-----------TLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceec-----------cHHHHHHHHHHhhhhcccCCCCC
Confidence 3455566666666543 78888888888876532110 000000 11222222222 11233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCCCCccHHH
Q 004632 565 VVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPNEVTFMNILWACSHSGS-----VEEGKFYFNAMRIFGVEPDLQHYA 639 (741)
Q Consensus 565 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 639 (741)
......++.. ++.++++.|+.++.+|.+.|..|....-..++.+....|. ..-|...++-....|.+-......
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~la 337 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLA 337 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHH
Confidence 3344444443 3568999999999999999988876665555556545553 223444555555567544444444
Q ss_pred HHHHHHHh
Q 004632 640 CMVDLLSR 647 (741)
Q Consensus 640 ~l~~~~~~ 647 (741)
..+-.++.
T Consensus 338 q~~~~la~ 345 (725)
T PRK13341 338 QAALYLAT 345 (725)
T ss_pred HHHHHHHc
Confidence 44433443
No 487
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.82 E-value=3.4e+02 Score=25.04 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=61.2
Q ss_pred HHHHHHH--hccCCHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 004632 604 MNILWAC--SHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSMPFPAN-GSIWGALLNGCRIH 680 (741)
Q Consensus 604 ~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~ 680 (741)
..++.++ ...+++++|.+.+-+- .+. ...-..++.++...|+.+.|..+++..+.+.+ ......+... ..+
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LAN 153 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHc
Confidence 3444443 3447777887776321 222 22233577888889999999999999954443 3333433433 777
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 004632 681 KRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA 712 (741)
Q Consensus 681 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 712 (741)
+...+|..+.+...+. .....+..+...+.
T Consensus 154 ~~v~EAf~~~R~~~~~--~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPDE--LRRRLFEQLLEHCL 183 (226)
T ss_pred CCHHHHHHHHHhCchh--hhHHHHHHHHHHHH
Confidence 8999999887765542 11334555555555
No 488
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.47 E-value=62 Score=30.90 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhH
Q 004632 164 WSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTM 199 (741)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 199 (741)
|+.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 566677777777777777777777776655444444
No 489
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.84 E-value=1.9e+02 Score=33.92 Aligned_cols=121 Identities=12% Similarity=-0.048 Sum_probs=70.0
Q ss_pred HHhccCCHHHHHH------HHHHHHHcCCCCCccHHHHHHHHHHhcCChHHHHHHHHhC----------CCCCCHHHHHH
Q 004632 609 ACSHSGSVEEGKF------YFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM----------PFPANGSIWGA 672 (741)
Q Consensus 609 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~ 672 (741)
.....|.+.++.+ ++......-.+.....|..+...+.+.|+.++|+..-.+. ..+.+...+..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444555555555 4443322112334566777777777777777777776655 11223334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcc--------CCCCchhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 004632 673 LLNGCRIHKRIDVMKTIEKELSVT--------GTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEV 729 (741)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 729 (741)
+.-.+...++...|...+.++..+ .|+-......+..++...++.+.|+.+++.+.+
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 555556666666666666666532 244444556666666666777777777777665
No 490
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.77 E-value=68 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 004632 264 SWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITV 303 (741)
Q Consensus 264 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 303 (741)
-|+..|....+.|++++|+.++++....|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4778888888888888888888888888876555555433
No 491
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.73 E-value=5.1e+02 Score=26.71 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 004632 367 WNMLISEYAR---KGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVG 413 (741)
Q Consensus 367 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 413 (741)
...++.++.+ .++++.|+.++..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555544 5789999999999999988887665555554444433
No 492
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.71 E-value=2.4e+02 Score=22.80 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCChHHHHH-------HHHhC-C-CCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHhc
Q 004632 638 YACMVDLLSRSGDIEGAFK-------MIHSM-P-FPANGSIWGAL----LNGCRIHKRIDVMKTIEKELSV 695 (741)
Q Consensus 638 ~~~l~~~~~~~~~~~~A~~-------~~~~~-~-~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~ 695 (741)
+..|..++...|++++++. +|++- . .......|... ..++...|+.++|...|+.+-+
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3445556666666655433 33332 1 22333334322 3346677888888888776543
No 493
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.63 E-value=37 Score=32.83 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=50.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCChHH
Q 004632 576 GMHGQLNDAASLFKQMLDSGIKPNE-VTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPD-LQHYACMVDLLSRSGDIEG 653 (741)
Q Consensus 576 ~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 653 (741)
...|.++.|++.|...++ +.|.. ..|.--..++.+.+++..|++-+....+. .|| ...|-.-..+-...|+|++
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 456677777777777777 44543 35555566677777777777777776663 333 2233333333445677777
Q ss_pred HHHHHHhC
Q 004632 654 AFKMIHSM 661 (741)
Q Consensus 654 A~~~~~~~ 661 (741)
|...+...
T Consensus 201 aa~dl~~a 208 (377)
T KOG1308|consen 201 AAHDLALA 208 (377)
T ss_pred HHHHHHHH
Confidence 77777666
No 494
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.42 E-value=4.4e+02 Score=25.86 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHH-h-----cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHH
Q 004632 550 LQTAQRVFDSMS---ERNVVSWSAMIDCYG-M-----HGQLNDAASLFKQMLDSGIKPNEV-TFMNILWACSHSGSVEEG 619 (741)
Q Consensus 550 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~-~-----~~~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a 619 (741)
.+++..++++.. .|.+......|.++- . .-+|.....+|+-+.. +.|+++ +.|.-+ +..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHhH
Confidence 344555554433 244444444444332 1 1245555666666655 445443 333332 23333334455
Q ss_pred HHHHHHHHHcC-CCCCccHHHHHHHHHHhcCChHHHHHHHHhC
Q 004632 620 KFYFNAMRIFG-VEPDLQHYACMVDLLSRSGDIEGAFKMIHSM 661 (741)
Q Consensus 620 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (741)
+...+-+...+ +.--...+..-.+.+.+.|+.++|...|++.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence 55555544421 1111222233345556666666666666665
No 495
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.77 E-value=67 Score=22.24 Aligned_cols=48 Identities=6% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHhh-----cCCChhhHHHH
Q 004632 70 YMWNNFFEESILLYHKMIREQATISNFIYPSVLRACS-----SLGDLGSGEKV 117 (741)
Q Consensus 70 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~ 117 (741)
+...|++-+|=++++.+......+....+..+|...+ +.|+...|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4456777777777777765433334445555554432 44555555443
No 496
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.38 E-value=1.1e+02 Score=22.90 Aligned_cols=67 Identities=4% Similarity=0.197 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHHhCCCCChhhhHHHHHHHHccCChhhHHHhhccCCCCCccchHHHHHHHHhcCChhHH
Q 004632 8 TNLRKLTRLHAHLLVTGLHYDPPASTRLIESYAEMGSLRSSRLVFDTFKEPDSFMWAVLIKCYMWNNFFEES 79 (741)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 79 (741)
+.++ +..++..+++.|+ .+..-+ =..-++..+.++|..+++-++.....+|..+.+++...|...-|
T Consensus 12 ~dL~-v~~ild~L~~~gv-lt~~~~---e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 12 KDIK-TSYIMDHMISDGV-LTLDEE---EKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHcc-HHHHHHHHHhcCC-CCHHHH---HHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 4444 5668888888885 444333 23333666788888888888888888888888888766544433
No 497
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.92 E-value=4.5e+02 Score=25.46 Aligned_cols=44 Identities=9% Similarity=-0.054 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhccCChhhHHHHHHHHHH
Q 004632 282 LESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQIIR 325 (741)
Q Consensus 282 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 325 (741)
.++++.|...++.|...+|..+.-.+.+.=.+.....+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35677777788888888888877777777777777777777663
No 498
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.54 E-value=2e+02 Score=25.31 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCC--CccHHHHHHH-----HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004632 616 VEEGKFYFNAMRIFGVEP--DLQHYACMVD-----LLSRSGDIEGAFKMIHSMPFPANGSIWGALLNGCRIHKR 682 (741)
Q Consensus 616 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 682 (741)
.+.|+.+|+.+.+.-..| -......++. .|.+.|.+++|.+++++.-..|+.......+....+.+|
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
No 499
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.40 E-value=2.1e+02 Score=26.93 Aligned_cols=53 Identities=6% Similarity=-0.093 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC------CchhHHHHHHHHhhcCChHHHHHHHH
Q 004632 673 LLNGCRIHKRIDVMKTIEKELSVTGTN------DNGYYTLLSNIYAEEGNWDEFGKVRS 725 (741)
Q Consensus 673 l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 725 (741)
++.-+...|++++|.++++.+...... ...+...|..++.+.|+.++.+.+-=
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333445555555555555555322111 11234455555666666666555533
No 500
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.07 E-value=61 Score=23.51 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=20.3
Q ss_pred cccccccchHHHHHHHHHHHHhCCCCChhhhHHH
Q 004632 2 PLFRSCTNLRKLTRLHAHLLVTGLHYDPPASTRL 35 (741)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 35 (741)
|+|+.|...++|..+.+=|.+.| .-|+...+.|
T Consensus 39 D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45677777777777777666666 3455444433
Done!