Query 004632
Match_columns 741
No_of_seqs 612 out of 3606
Neff 11.6
Searched_HMMs 29240
Date Tue Mar 26 21:22:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/004632.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_126-130//hhsearch_pdb/004632hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 302.5 40.4 499 140-712 63-595 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 302.2 40.8 477 244-732 66-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 203.9 41.9 316 364-716 67-388 (388)
4 4g26_A Pentatricopeptide repea 1.0 1 1 202.3 18.1 207 80-308 10-221 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 200.8 40.4 352 372-730 7-368 (388)
6 4g26_A Pentatricopeptide repea 1.0 1 1 200.1 22.9 182 62-243 28-222 (501)
7 2gw1_A Mitochondrial precursor 1.0 1 1 189.1 33.7 239 465-708 238-490 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 188.2 33.3 222 503-729 241-477 (514)
9 3fp2_A TPR repeat-containing p 1.0 1 1 181.4 36.7 235 467-706 246-501 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 175.3 35.1 39 682-720 395-444 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=302.54 Aligned_cols=499 Identities=8% Similarity=-0.035 Sum_probs=246.4
Q ss_pred HHHCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 67139926899997027999911099999999828991379999999677798889625999999853559904598999
Q 004632 140 YGEFGCLDDARKVFDKMTSRDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIH 219 (741)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 219 (741)
....|....+...++.++.++...|+.++..+.+.|++++|..+|++|.. ..|+..++..+...+...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 65567667887754663378999999999999874583479999999996--0899357999999999747699999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC-------------------CCHHHHHHHHHHHCCCHHH
Q ss_conf 999983378864799999999981699788999985268998-------------------0219999999995499358
Q 004632 220 GHVLRRKIKIDGPLGNSFIVMYSKCGDLLSAERTFVKIEKRC-------------------TTSWTAMISCYNRSGWFQK 280 (741)
Q Consensus 220 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~li~~~~~~~~~~~ 280 (741)
+.+... +++..+++.++.+|.+.|++++|..+|+++.... ..+|+.++..+.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 987335--456508999999999886699999998424886322323433432112351258999998899998399899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH--H-HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999998887999993459989998626699156899--9-99999938999861488799999894199379999997
Q 004632 281 ALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKS--V-HCQIIRKGMGPEYDYLGPALIEFYAECGKMSECEKVIH 357 (741)
Q Consensus 281 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 357 (741)
|++.|++|...+. .+...+..+...+...+..+.... + +..+...+ ...
T Consensus 219 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~---------------------- 270 (597)
T 2xpi_A 219 AKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED-----AAF---------------------- 270 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-----HHH----------------------
T ss_pred HHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCH-----HHH----------------------
T ss_conf 9999999997293-256999999985034615678999865774234430-----889----------------------
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 52998910099999999975994499999999997798988988999999850408738999999999983688401688
Q 004632 358 AIGERNILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQS 437 (741)
Q Consensus 358 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (741)
....|+.++..|.+.|++++|..+++++... +++..++..++..+...|++++|..+++.+.+.++.
T Consensus 271 -----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 337 (597)
T 2xpi_A 271 -----LRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY------ 337 (597)
T ss_dssp -----HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred -----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC------
T ss_conf -----9999999999980731399999999876438--830999999999999846899999999999972955------
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999993299899999999615799007999999999669928999999999988999889999999999714054884
Q 004632 438 SLIDMYSKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEK 517 (741)
Q Consensus 438 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 517 (741)
+..++..++.++...|++++|..+++.+... .+.+..++..++..+.+.|++++
T Consensus 338 -------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 338 -------------------------NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp -------------------------CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHH
T ss_conf -------------------------3799999999999827777999999999851-83547999999999998356999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999999809988810599999999943999999999983499---88778999999999629989999999999986
Q 004632 518 GKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDS 594 (741)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 594 (741)
|..+++.+.+..+ .+..++..++.++.+.|++++|..+|+++.+ .+..+|..++.+|...|++++|.++|+++.+.
T Consensus 392 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999987297-778999999999997577799999999999868134389999999999857999999999999984
Q ss_pred CCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCCCC--CCHHHHHHHHHHHCCCHHHHHHHHHHC--CCCC
Q ss_conf 9998-8789999999984209989899999999982----99889--407989999998239938899989829--9999
Q 004632 595 GIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIF----GVEPD--LQHYACMVDLLSRSGDIEGAFKMIHSM--PFPA 665 (741)
Q Consensus 595 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~ 665 (741)
.| +..++..++..|.+.|++++|.++++++.+. +..|+ ...+..++.+|.+.|++++|.+.++++ ..|.
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred --CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf --888767999999999981899999999999998532345453549999999999999804799999999999973899
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 98899999999974199999999999986159999516999999995
Q 004632 666 NGSIWGALLNGCRIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYA 712 (741)
Q Consensus 666 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 712 (741)
+..+|..++.++...|++++|...++++++++|+++..+..++.+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 73899999999998178999999999997208887489999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=302.19 Aligned_cols=477 Identities=10% Similarity=-0.023 Sum_probs=362.2
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 69978899998526899802199999999954993589999999888799999345998999862669915689999999
Q 004632 244 CGDLLSAERTFVKIEKRCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCAGLGWLREGKSVHCQI 323 (741)
Q Consensus 244 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 323 (741)
.|....+...+..++.+++..|+.++..+.+.|++++|+.++++|.. ..|+..++..++.++...|+++.|..+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 67667887754663378999999999999874583479999999996--0899357999999999747699999999987
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCC-------------------CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 993899986148879999989419937999999752998-------------------9100999999999759944999
Q 004632 324 IRKGMGPEYDYLGPALIEFYAECGKMSECEKVIHAIGER-------------------NILSWNMLISEYARKGMSKEAL 384 (741)
Q Consensus 324 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~ 384 (741)
... |.+..++..++.+|.+.|++++|..+|++.... +..+|+.++..|.+.|++++|.
T Consensus 144 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 144 DLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp CGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 335---45650899999999988669999999842488632232343343211235125899999889999839989999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHH--HH-HHHHHHHCCCCCH-HHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf 99999997798988-988999999850408738999--99-9999983688401-6889999999329989999999961
Q 004632 385 ELLVQMQTWGLMPD-SFSVASSLSACGNVGSLQLGL--QI-HGHVIKIDCKDEF-VQSSLIDMYSKCGFKNLAYLLFERI 459 (741)
Q Consensus 385 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 459 (741)
..|++|...+ |+ ...+..+...+...+..+... .+ +..+...++.... ++..++..|.+.|++++|..+|+++
T Consensus 221 ~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 221 ECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999999729--32569999999850346156789998657742344308899999999999980731399999999876
Q ss_pred CC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 57--9900799999999966992899999999998899988999999999971405488499999999980998881059
Q 004632 460 QQ--KSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYID 537 (741)
Q Consensus 460 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 537 (741)
.. ++..++..++..|.+.|++++|..+|+++...+ +.+..++..++..+...|+.++|..+++.+.+.. +.+..++
T Consensus 299 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp TTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHH
T ss_conf 4388309999999999998468999999999999729-5537999999999998277779999999998518-3547999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCC
Q ss_conf 9999999943999999999983499---887789999999996299899999999999869998-878999999998420
Q 004632 538 TALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHS 613 (741)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 613 (741)
..++..|.+.|++++|..+|+++.+ .+..+|..++.++.+.|++++|.++|+++.+. .| +..++..++.+|...
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHC
T ss_conf 999999998356999999999998729777899999999999757779999999999986--813438999999999985
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHCCCHH
Q ss_conf 998989999999998299889407989999998239938899989829-------99999--889999999997419999
Q 004632 614 GSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM-------PFPAN--GSIWGALLNGCRIHKRID 684 (741)
Q Consensus 614 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~ 684 (741)
|++++|.++|+++.+.. +.+...|..++.+|.+.|++++|.++++++ +..|+ ..+|..++.++...|+++
T Consensus 455 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 455 GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 79999999999999848-88767999999999981899999999999998532345453549999999999999804799
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999998615999951699999999503991789999999986799
Q 004632 685 VMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVTGL 732 (741)
Q Consensus 685 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 732 (741)
+|...++++.+..|+++.++..++.+|...|++++|.++++++.+...
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 999999999973899738999999999981789999999999972088
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=203.87 Aligned_cols=316 Identities=14% Similarity=0.107 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 10099999999975994499999999997798988988999999850408738999999999983688401688999999
Q 004632 364 ILSWNMLISEYARKGMSKEALELLVQMQTWGLMPDSFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMY 443 (741)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 443 (741)
...|..+...+.+.|++++|...|+++.... +.+...+..+...+...|+++.|...+..+++..|.....+..+...+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 6999999999987799999999999998749-653999999999999858999999999999975989689999999999
Q ss_pred HHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 93299899999999615799007999999999669928999999999988999889999999999714054884999999
Q 004632 444 SKCGFKNLAYLLFERIQQKSVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHH 523 (741)
Q Consensus 444 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (741)
...|++++|... |+++.... +.+..++..+...+...|+++.|...++
T Consensus 146 ~~~g~~~~A~~~-------------------------------~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 146 KALGRLEEAKAC-------------------------------YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HTTSCHHHHHHH-------------------------------HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHH-------------------------------HHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 984689999999-------------------------------99998729-8978999999999998599999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-
Q ss_conf 99980998881059999999994399999999998349--98-877899999999962998999999999998699988-
Q 004632 524 KLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMS--ER-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN- 599 (741)
Q Consensus 524 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~- 599 (741)
.+.+.++ .+...+..+...+...|++++|...+++.. .| +..++..+...+...|++++|...++++.+ ..|+
T Consensus 194 ~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 270 (388)
T 1w3b_A 194 KAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHF 270 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSC
T ss_pred HHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
T ss_conf 9985598-86799999999999857899999999999852968789999999999986889999999999986--49998
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHH
Q ss_conf 78999999998420998989999999998299889407989999998239938899989829--9999988999999999
Q 004632 600 EVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGC 677 (741)
Q Consensus 600 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~ 677 (741)
..++..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++ ..|.+...+..++..+
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8999999999998699799999999998649-444999999999999848999999999999860987399997799999
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 741999999999999861599995169999999950399
Q 004632 678 RIHKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGN 716 (741)
Q Consensus 678 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 716 (741)
...|++++|...++++++..|+++..+..++.++...|+
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 986888999999999986199978999859999987459
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=202.34 Aligned_cols=207 Identities=13% Similarity=0.074 Sum_probs=95.1
Q ss_pred HHHHHHHHHCCCCCCCC-CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 99999988659999952-09999998406899025889999999928999734665799996713992689999702799
Q 004632 80 ILLYHKMIREQATISNF-IYPSVLRACSSLGDLGSGEKVHGRIIKCGFDKDDVIQTSILCTYGEFGCLDDARKVFDKMTS 158 (741)
Q Consensus 80 ~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (741)
..+.+++.+.+....+. .+..+|..|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.+.....
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH---------
T ss_conf 99999999826668979999999999985989999999999999818998783999999999857830433---------
Q ss_pred CCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99110999999998289913799999996777988896259999998535599045989999999833788647999999
Q 004632 159 RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGELCSLRPARSIHGHVLRRKIKIDGPLGNSFI 238 (741)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 238 (741)
...++.+.|.++|++|...|+.||..||+.++.++++.|+++.|.++++.|.+.|+.|+..+|+.+|
T Consensus 81 -------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI 147 (501)
T 4g26_A 81 -------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147 (501)
T ss_dssp -------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred -------------HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHH
T ss_conf -------------3212499999999999980899989999999999984697788999999999728988611104899
Q ss_pred HHHHHCCCHHHHHHHHHCCCC----CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999816997889999852689----9802199999999954993589999999888799999345998999862
Q 004632 239 VMYSKCGDLLSAERTFVKIEK----RCTTSWTAMISCYNRSGWFQKALESFVKMLEVKEEPNLITLITVLGSCA 308 (741)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 308 (741)
.+|++.|++++|.++|++|.. |+..+|+.+|.++++.|+.++|.+++++|.+.|..|+..||..++..+.
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99998889999999999998629999999999999998538989999999999999489969999999999983
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=200.84 Aligned_cols=352 Identities=13% Similarity=0.042 Sum_probs=233.2
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 999975994499999999997798988-9889999998504087389999999999836884016889999999329989
Q 004632 372 SEYARKGMSKEALELLVQMQTWGLMPD-SFSVASSLSACGNVGSLQLGLQIHGHVIKIDCKDEFVQSSLIDMYSKCGFKN 450 (741)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 450 (741)
..+.+.|++++|...+..+... .|+ ...+..+...+...++++.+...+..+++..+.....+..++..+...|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 9998779999999999999984--97889999999999998689999999999997619786699999999998779999
Q ss_pred HHHHHHHHCCC--C-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999996157--9-90079999999996699289999999999889998899999999997140548849999999998
Q 004632 451 LAYLLFERIQQ--K-SVVMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLIS 527 (741)
Q Consensus 451 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (741)
+|...|+++.. | +...+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++.+.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999987496539999999999998589999999999999759-89689999999999984689999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHH
Q ss_conf 09988810599999999943999999999983499--8-877899999999962998999999999998699988-7899
Q 004632 528 YGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE--R-NVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTF 603 (741)
Q Consensus 528 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 603 (741)
..+ .+...+..+...+...|++++|...|+++.+ | +...|..+...+...|++++|...++++.. ..|+ ..++
T Consensus 164 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred HCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHH
T ss_conf 298-97899999999999859999999999999855988679999999999985789999999999985--296878999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999998420998989999999998299889407989999998239938899989829--99999889999999997419
Q 004632 604 MNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHK 681 (741)
Q Consensus 604 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 681 (741)
..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|...++++ ..|.+..++..++..+...|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 999999998688999999999998649-9988999999999998699799999999998649444999999999999848
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9999999999986159999516999999995039917899999999867
Q 004632 682 RIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIMEVT 730 (741)
Q Consensus 682 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 730 (741)
++++|...++++++..|++...+..++.+|.+.|++++|...++++.+.
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999998609873999977999999868889999999999861
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=200.10 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC---------HHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 0688999998239924799999998865999995209999998406899---------0258899999999289997346
Q 004632 62 MWAVLIKCYMWNNFFEESILLYHKMIREQATISNFIYPSVLRACSSLGD---------LGSGEKVHGRIIKCGFDKDDVI 132 (741)
Q Consensus 62 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 132 (741)
.++.+|.+|++.|+.++|+.+|++|.+.|+.|+..+|+.+|.+|+..+. .+.|.+++++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCC----CCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 65799996713992689999702799----99110999999998289913799999996777988896259999998535
Q 004632 133 QTSILCTYGEFGCLDDARKVFDKMTS----RDVVSWSSIIASYFDNADVSEGLKMFHSMVREGVEPDFVTMLSLAEACGE 208 (741)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 208 (741)
|+.++.+|++.|++++|.++|++|.+ |+..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.++++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 59904598999999983378864799999999981
Q 004632 209 LCSLRPARSIHGHVLRRKIKIDGPLGNSFIVMYSK 243 (741)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 243 (741)
.|+.++|.++++.|.+.|..|+..+++.++..+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 89899999999999994899699999999999830
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=189.08 Aligned_cols=239 Identities=10% Similarity=0.006 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 07999999999669928999999999988999889999999999714054884999999999809988810599999999
Q 004632 465 VMWNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMY 544 (741)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (741)
..+..+...+...|++++|...++.+..... +...+..+...+...|+++.|...++.+.+..+ .+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_conf 9999999999987899999999999986386--489999999999988889999999999861386-7789999999999
Q ss_pred HHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 943999999999983499---887789999999996299899999999999869998-8789999999984209989899
Q 004632 545 AKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGK 620 (741)
Q Consensus 545 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 620 (741)
...|++++|...++++.+ .+...+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98077999999999998738502899999999999868999999999999987--5467789999999998788999999
Q ss_pred HHHHHHHHCCC-CCC----CCHHHHHHHHHHH---CCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999998299-889----4079899999982---39938899989829--99999889999999997419999999999
Q 004632 621 FYFNAMRIFGV-EPD----LQHYACMVDLLSR---SGDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDVMKTIE 690 (741)
Q Consensus 621 ~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 690 (741)
..++++..... .++ ...+..++.++.. .|++++|...++++ ..+.+...+..++..+...|++++|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999997612332178999999999999866332588899999999998758555899999999999825799999999
Q ss_pred HHHHCCCCCCCHHHHHHH
Q ss_conf 998615999951699999
Q 004632 691 KELSVTGTNDNGYYTLLS 708 (741)
Q Consensus 691 ~~~~~~~p~~~~~~~~l~ 708 (741)
+++.+..|.++..+..+.
T Consensus 473 ~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 473 EESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHH
T ss_conf 999876614688999999
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=188.22 Aligned_cols=222 Identities=9% Similarity=-0.037 Sum_probs=82.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCC
Q ss_conf 999999714054884999999999809988810599999999943999999999983499---88778999999999629
Q 004632 503 LTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAKCGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHG 579 (741)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 579 (741)
..+...+...|+++.|...++.+.+..+. ...+..+...+...|++++|...++++.+ .+...+..+...+...|
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999878999999999999863864--8999999999998888999999999986138677899999999999807
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9899999999999869998-878999999998420998989999999998299889407989999998239938899989
Q 004632 580 QLNDAASLFKQMLDSGIKP-NEVTFMNILWACSHSGSVEEGKFYFNAMRIFGVEPDLQHYACMVDLLSRSGDIEGAFKMI 658 (741)
Q Consensus 580 ~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (741)
++++|...++++.+ ..| +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 79999999999987--385028999999999998689999999999999875-467789999999998788999999999
Q ss_pred HHC----CCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 829----99999----8899999999974---199999999999986159999516999999995039917899999999
Q 004632 659 HSM----PFPAN----GSIWGALLNGCRI---HKRIDVMKTIEKELSVTGTNDNGYYTLLSNIYAEEGNWDEFGKVRSIM 727 (741)
Q Consensus 659 ~~~----~~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 727 (741)
+++ +..+. ...+..++..+.. .|++++|...++++....|++...+..++.+|...|++++|...+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99997612332178999999999999866332588899999999998758555899999999999825799999999999
Q ss_pred HH
Q ss_conf 86
Q 004632 728 EV 729 (741)
Q Consensus 728 ~~ 729 (741)
.+
T Consensus 476 ~~ 477 (514)
T 2gw1_A 476 AD 477 (514)
T ss_dssp HH
T ss_pred HH
T ss_conf 87
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=181.43 Aligned_cols=235 Identities=10% Similarity=0.040 Sum_probs=162.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999966992899999999998899988999999999971405488499999999980998881059999999994
Q 004632 467 WNSMICGFYQNGNSLEAINLFHQMYLNCLEMDEVTFLTAIQACSNIGQLEKGKWVHHKLISYGVRKDIYIDTALTDMYAK 546 (741)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 546 (741)
+..+...+...|++++|...++..... .|+...+..+...+...|+++.|...++.+.+..+. +..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
T ss_conf 999999987545578999999999866--987469999999999803799999999997545999-87999999999986
Q ss_pred CCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 3999999999983499---8877899999999962998999999999998699988-78999999998420998989999
Q 004632 547 CGDLQTAQRVFDSMSE---RNVVSWSAMIDCYGMHGQLNDAASLFKQMLDSGIKPN-EVTFMNILWACSHSGSVEEGKFY 622 (741)
Q Consensus 547 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 622 (741)
.|++++|...++++.+ .+...+..+..++...|++++|...++++.+. .|+ ...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 689999999999999859997799999999999847799999999999873--999859999999999883788999999
Q ss_pred HHHHHHCCCC-CC----CCHHHHHHHHHHHC----------CCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 9999982998-89----40798999999823----------9938899989829--999998899999999974199999
Q 004632 623 FNAMRIFGVE-PD----LQHYACMVDLLSRS----------GDIEGAFKMIHSM--PFPANGSIWGALLNGCRIHKRIDV 685 (741)
Q Consensus 623 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 685 (741)
++++.+.... +. ...+...+.++... |++++|...++++ ..|.+...+..++..+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 99998709762446888999998899999976401002247579999999999997499978999999999998514999
Q ss_pred HHHHHHHHHCCCCCCCHHHHH
Q ss_conf 999999986159999516999
Q 004632 686 MKTIEKELSVTGTNDNGYYTL 706 (741)
Q Consensus 686 a~~~~~~~~~~~p~~~~~~~~ 706 (741)
|...++++.++.|.+......
T Consensus 481 A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHH
T ss_conf 999999999868993888888
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=175.34 Aligned_cols=39 Identities=0% Similarity=-0.162 Sum_probs=17.2
Q ss_pred CHHHHHHHHHH-HHCCCCCCCH----------HHHHHHHHHHHCCCHHHH
Q ss_conf 99999999999-8615999951----------699999999503991789
Q 004632 682 RIDVMKTIEKE-LSVTGTNDNG----------YYTLLSNIYAEEGNWDEF 720 (741)
Q Consensus 682 ~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 720 (741)
+.+++.+.+++ ++...|++.. .+..+..+|...+|.+++
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 98999999999999759897999347899999999999999986899999
Done!