Query 004635
Match_columns 740
No_of_seqs 258 out of 637
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2292 Oligosaccharyltransfer 100.0 1E-217 3E-222 1720.2 45.5 706 30-737 6-718 (751)
2 COG1287 Uncharacterized membra 100.0 1.2E-61 2.6E-66 577.0 45.6 679 46-738 17-734 (773)
3 PF02516 STT3: Oligosaccharyl 100.0 3.1E-63 6.7E-68 565.7 4.0 473 46-587 2-482 (483)
4 TIGR03663 conserved hypothetic 99.6 9.2E-12 2E-16 140.5 37.1 163 50-239 3-165 (439)
5 PF10034 Dpy19: Q-cell neurobl 98.9 1.7E-05 3.7E-10 93.2 41.6 143 100-246 63-215 (642)
6 PRK13279 arnT 4-amino-4-deoxy- 98.9 3.5E-06 7.5E-11 97.7 32.3 146 75-238 30-181 (552)
7 TIGR03662 Chlor_Arch_YYY Chlor 98.7 0.0013 2.7E-08 78.6 48.5 79 545-623 593-688 (723)
8 PF02366 PMT: Dolichyl-phospha 98.7 1.5E-06 3.3E-11 90.8 20.0 97 139-237 80-182 (245)
9 PF13231 PMT_2: Dolichyl-phosp 98.6 2.9E-06 6.2E-11 81.7 18.1 113 120-240 6-118 (159)
10 TIGR03766 conserved hypothetic 98.6 0.00011 2.4E-09 84.5 33.3 168 53-242 70-241 (483)
11 PF10131 PTPS_related: 6-pyruv 98.5 0.00019 4.1E-09 84.8 33.8 115 117-237 4-119 (616)
12 COG1807 ArnT 4-amino-4-deoxy-L 98.5 1.3E-05 2.8E-10 93.4 23.0 170 52-241 11-182 (535)
13 KOG3359 Dolichyl-phosphate-man 98.3 8.9E-05 1.9E-09 86.4 21.7 193 40-254 27-238 (723)
14 COG4745 Predicted membrane-bou 98.0 0.0001 2.2E-09 81.1 15.2 155 50-233 17-173 (556)
15 COG1928 PMT1 Dolichyl-phosphat 97.9 3.3E-05 7.1E-10 89.8 9.9 183 49-254 25-226 (699)
16 PLN02816 mannosyltransferase 97.6 0.11 2.5E-06 60.6 31.5 139 56-212 43-187 (546)
17 PF11028 DUF2723: Protein of u 97.6 0.0023 5E-08 63.8 15.2 110 139-253 38-165 (178)
18 PF11847 DUF3367: Domain of un 97.5 0.27 5.9E-06 58.0 32.9 120 105-233 41-167 (680)
19 COG1287 Uncharacterized membra 97.4 0.027 5.8E-07 68.8 23.9 49 540-588 473-524 (773)
20 PF03901 Glyco_transf_22: Alg9 97.1 0.25 5.4E-06 55.9 26.9 148 56-215 4-153 (418)
21 COG5305 Predicted membrane pro 97.1 0.013 2.8E-07 67.7 16.2 114 97-217 68-190 (552)
22 PF04188 Mannosyl_trans2: Mann 96.0 0.34 7.3E-06 55.4 18.5 90 140-239 111-201 (443)
23 COG5617 Predicted integral mem 95.7 1.3 2.7E-05 52.9 21.7 127 75-217 30-165 (801)
24 COG4346 Predicted membrane-bou 95.7 0.22 4.7E-06 53.8 14.0 174 47-237 27-242 (438)
25 PF09586 YfhO: Bacterial membr 95.2 12 0.00026 46.4 30.2 80 139-221 87-169 (843)
26 PF09913 DUF2142: Predicted me 94.8 3.9 8.4E-05 45.7 21.6 113 117-237 95-211 (389)
27 PF04922 DIE2_ALG10: DIE2/ALG1 94.5 0.55 1.2E-05 52.5 13.5 115 76-208 9-127 (379)
28 PF09852 DUF2079: Predicted me 94.3 2.5 5.4E-05 48.4 18.9 100 113-227 39-141 (449)
29 KOG4587 Predicted membrane pro 92.1 2.1 4.6E-05 48.3 12.9 70 542-623 460-545 (605)
30 COG5650 Predicted integral mem 91.7 0.53 1.1E-05 53.8 8.0 178 73-286 114-293 (536)
31 PF02516 STT3: Oligosaccharyl 91.6 4.6 9.9E-05 46.4 15.9 34 411-445 331-364 (483)
32 PF09971 DUF2206: Predicted me 89.9 28 0.0006 39.0 19.4 36 526-561 243-279 (367)
33 KOG2515 Mannosyltransferase [C 88.6 51 0.0011 37.7 20.1 119 59-190 22-144 (568)
34 PF10060 DUF2298: Uncharacteri 80.4 1.2E+02 0.0026 35.1 31.6 99 53-170 61-160 (473)
35 PF09594 DUF2029: Protein of u 70.2 1.3E+02 0.0028 30.5 16.6 74 154-237 33-110 (241)
36 PF14264 Glucos_trans_II: Gluc 69.4 1.7E+02 0.0037 31.6 16.2 90 146-241 50-144 (319)
37 COG3463 Predicted membrane pro 68.1 1.7E+02 0.0036 33.4 15.3 67 143-212 89-158 (458)
38 COG5542 Predicted integral mem 61.3 1E+02 0.0022 34.9 12.0 111 117-239 96-207 (420)
39 COG5427 Uncharacterized membra 50.1 23 0.0005 39.8 4.8 38 600-638 622-660 (684)
40 KOG1989 ARK protein kinase fam 46.8 5 0.00011 48.4 -0.9 61 618-688 184-260 (738)
41 KOG2647 Predicted Dolichyl-pho 45.9 1.2E+02 0.0025 34.5 9.4 70 142-214 126-196 (444)
42 PF11345 DUF3147: Protein of u 41.9 2.2E+02 0.0048 26.1 9.2 35 150-184 6-41 (108)
43 KOG2642 Alpha-1,2 glucosyltran 36.9 21 0.00046 39.2 2.0 31 76-111 34-64 (446)
44 COG4485 Predicted membrane pro 33.8 9E+02 0.02 29.6 14.4 52 190-241 279-345 (858)
45 PF09586 YfhO: Bacterial membr 33.2 1E+03 0.022 29.4 19.6 14 19-32 57-70 (843)
46 TIGR00844 c_cpa1 na(+)/h(+) an 27.6 1.3E+03 0.028 28.8 17.6 11 263-273 35-45 (810)
47 PRK02509 hypothetical protein; 25.8 9.3E+02 0.02 30.6 13.4 29 171-199 286-326 (973)
48 PRK00068 hypothetical protein; 25.8 1.1E+03 0.024 30.0 14.2 11 189-199 246-256 (970)
49 PF10797 YhfT: Protein of unkn 25.4 7.3E+02 0.016 28.1 11.3 68 143-211 126-200 (420)
50 COG5151 SSL1 RNA polymerase II 24.0 58 0.0013 35.1 2.5 63 576-640 141-214 (421)
51 KOG2516 Protein involved in do 22.2 2.1E+02 0.0046 32.4 6.5 60 397-457 267-326 (517)
52 COG4906 Predicted membrane pro 21.6 1.4E+03 0.029 27.0 30.8 77 138-216 256-333 (696)
53 TIGR03145 cyt_nit_nrfE cytochr 20.0 1.6E+03 0.034 27.2 16.0 21 223-243 221-241 (628)
No 1
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-217 Score=1720.17 Aligned_cols=706 Identities=64% Similarity=1.115 Sum_probs=662.0
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCc
Q 004635 30 FSFKSFKLKTKQQELLLRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLG 109 (740)
Q Consensus 30 ~~~~~~~~~~~~~~~l~~~~iL~~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~G 109 (740)
+++++ ..+.+.+.+++.++||+++.+++|..|+++++|||++|||||||||||.+++++|||+++|+||||.++|||+|
T Consensus 6 ~~~~~-~~~~~~~~~ll~~~IL~l~~v~~fssRLFaVirfESiIHEFDP~FNYR~T~~l~~~GfY~F~NWFDdRaWYPLG 84 (751)
T KOG2292|consen 6 GGFKR-KSSRKGQQTLLKLLILVLAAVLSFSSRLFAVIRFESIIHEFDPWFNYRATRFLVENGFYKFLNWFDDRAWYPLG 84 (751)
T ss_pred ccccc-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHHHHHHhhHHHHHhhcccccccccc
Confidence 34444 45667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhc
Q 004635 110 RIIGGTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRS 189 (740)
Q Consensus 110 r~vg~t~yPgL~~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS 189 (740)
|.+|||+|||||.|+++||++++.++++++++++|+++.|+|+++|.+.+|+++||+++..|||+||.++|++|+|++||
T Consensus 85 RiiGGTvYPGLmiTsg~I~~~L~~L~i~v~Ir~VCVflAP~FSg~TsiaTY~ltkEl~~~gaGL~AA~fiaivPgYiSRS 164 (751)
T KOG2292|consen 85 RIIGGTVYPGLMITSGLIYWVLHFLNIPVHIRNVCVFLAPLFSGLTSIATYLLTKELKSAGAGLLAAAFIAIVPGYISRS 164 (751)
T ss_pred eeecccccchHHHHHHHHHHHHHHcccceeehheeeEechhhhchHHHHHHHHHHHHhcccccHHHHHHHhhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 004635 190 VAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGGYVFIINLIPLYVLVLLITGRYSMRLYVAYN 269 (740)
Q Consensus 190 ~~G~~D~e~l~lf~~~l~~~l~i~al~~~~~~~~~lagl~~~l~~~~WgGy~~i~~~i~l~~~v~~l~~r~~~~~~~~y~ 269 (740)
++|+||||++++|++++++|+|+|++|++++.|+.+++++|+||+.+||||+|++|+||+|+++++++|||+.|+|++|+
T Consensus 165 VAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHVlvlllmGRyS~rlyiaY~ 244 (751)
T KOG2292|consen 165 VAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHVLVLLLMGRYSSRLYIAYT 244 (751)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHHHHHHHhcccccceeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004635 270 CMYVLGMLLAMQIRFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKYMLSDTKLFQAFLRITVTSAIAVGALALGVGTAS 349 (740)
Q Consensus 270 ~~~~lg~~l~~~ip~vg~~~~~s~~~~~a~~vf~ll~~~~~~~~l~~~l~~~k~~~~~~~~~i~~~~~ig~~~l~~l~~~ 349 (740)
++|++|++++||+|||||||++|+|||+++|||+++|++++.+++|.++++ ++|+.+.+..+..+..++++++.+++..
T Consensus 245 t~y~lGtllsmqipfVGFqpv~tsEHmaa~gVF~L~qi~Af~~y~k~~ls~-~~F~~l~~~~v~~~~~~~~vv~~~Lt~~ 323 (751)
T KOG2292|consen 245 TFYCLGTLLSMQIPFVGFQPVRTSEHMAALGVFGLLQIVAFVDYLKGRLSP-KQFQVLFRLVVSLVGVVVFVVVAALTAT 323 (751)
T ss_pred hHHHHHHHHHccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998 9999999887766667777777888999
Q ss_pred cccCChhhhhhhccccccccccCCccccccccCCCChhHHHHHhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 004635 350 GYISPWTGRFYSLLDPTYAKDNIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKKLSDATIFIVMYGLTSMYFA 429 (740)
Q Consensus 350 g~~~p~~gr~~~ll~~~~~~~~~Pi~~SVsEhqp~~w~~~~~~~~~~~~l~~~Gl~~~~~~~~~~~lfllv~~~~~~y~a 429 (740)
|+++||+||+++|+||+|+|+|+||++|||||||++|++||+|+|++++++|+|+|+||++++|+++|+++|+++++||+
T Consensus 324 g~iaPWtGRfySL~D~~YAK~hIPIIASVSEHQPttW~SfffDlhiLv~lfPaGl~~Cfk~l~De~vFiilY~v~~~YFa 403 (751)
T KOG2292|consen 324 GYIAPWTGRFYSLWDTGYAKIHIPIIASVSEHQPTTWSSFFFDLHILVFLFPAGLYYCFKNLSDERVFIILYGVTSVYFA 403 (751)
T ss_pred ceecccccceeeccCCcchhcccceEEeccccCCCchHHHHHHHHHHHHhhhhhHHHhhhhcCCceEEEEehHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccCCCCCCCCCCCC---cccccCCCCcccchhHHHHHH
Q 004635 430 GVMVRLILVATPAVCLISAIAVSATIKNLTSLLRTKSKTA--VAGSSKGTGGSKAS---SKASFDQSQPFQKNGAIALLL 504 (740)
Q Consensus 430 ~~~vRf~~~lap~vailagi~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~---~~~~~~~~~~~~~~~~~~~v~ 504 (740)
++|||+|++++|++|+++|+++|.++|.+.+..+.+..+. ++.+.++++|..|. .++..++........+.++++
T Consensus 404 GVMVRLmLtLtP~vCils~ia~S~~~~~y~~~~~~~~~~~~~~~~~~~d~~k~~~vk~~~~~~~~~~~~~~~~~~~~~~~ 483 (751)
T KOG2292|consen 404 GVMVRLMLTLTPVVCILSGIAFSQLLDTYLKSDDTKREKSSISSASAEDEKKAGKVKSRSKKQGKQTEGVSLNVASIVIL 483 (751)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhcccccCCCccccccchhhhhhhhhhhhccccccCcchhhHHHHHH
Confidence 9999999999999999999999999999987554332211 11111111111111 111122233555567777777
Q ss_pred HHHHHHHhhhcchhhhhcccCCCcceeeeeccCCCccccchhHHHHHHHHHhcCCCCCeeEEeccccchhheecCceeee
Q 004635 505 GAFYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIV 584 (740)
Q Consensus 505 ~i~~ll~~f~~~~~~~~~~~ys~Psiv~~~~~~~g~~~i~dD~~eAl~WLr~NTp~da~VmSWWDYGY~It~~a~R~tla 584 (740)
++++++.+|+.||+|+|++|||+||+|++++++||++.+.|||||||+|||+|||+|++|||||||||||++||||||++
T Consensus 484 ~~~~~l~~f~~H~tWvTs~AYSsPSiVL~s~~~dg~r~i~DDFREAY~WLr~NT~~DakvmsWWDYGYQI~gMAnRTtlV 563 (751)
T KOG2292|consen 484 VMAMLLIMFVVHCTWVTSEAYSSPSIVLSSRGNDGSRIIFDDFREAYYWLRQNTPEDAKVMSWWDYGYQIAGMANRTTLV 563 (751)
T ss_pred HHHHHHHHHHheeeeeeccccCCCcEEEEeecCCCCeeeehhhHHHHHHHHhCCcccchhhhhhhccchhhhcccceEEe
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchhhhhhhhhcCCHHHHHHHHHhcCCCEEEEEeCCccccCccchhhHHHHHHHhCCCCC-CCCCCCCcc-CCc
Q 004635 585 DNNTWNNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFP-VIKEPDYLV-NGD 662 (740)
Q Consensus 585 Dnnt~n~t~Ia~vg~~las~E~~A~~Ilr~l~vdYVlv~~gg~~~y~~dDi~Kf~wm~rIa~~~~~-~i~~~dy~~-~g~ 662 (740)
||||||||||++|||+|+|+||+||+|||+||||||+|+|||++|||+||||||+||+|||++++| ||+|+||++ +||
T Consensus 564 DNNTWNNtHIa~VGkAMsS~EekayeImr~lDVdYVLVIFGG~iGYssDDINKFLWMvRI~~g~~p~~IkE~dy~t~~GE 643 (751)
T KOG2292|consen 564 DNNTWNNTHIATVGKAMSSPEEKAYEIMRELDVDYVLVIFGGLIGYSSDDINKFLWMVRIGGGEHPKHIKERDYFTPTGE 643 (751)
T ss_pred ecCcccchHHHHHHhhcCCcHHHHHHHHHHcCCCEEEEEecccccCCcchhhhhheeeeecCCcChhhcccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999 799
Q ss_pred eeccCCCCHhHHHHHhHhhhhccccccccccCCCCccccccceeecCCCCCCCcceeEEeeCCcEEEEEEecCCC
Q 004635 663 YRVDKGAAPKMLNCLMYKLSYYRFGELVTEYGKPPGYDRARGVEIGNKDIKLEHLEEAFTTSNWIVRIYKVKPPN 737 (740)
Q Consensus 663 ~~~~~~~~~~m~~slmykl~y~~f~~~~~~~~~~~g~d~~r~~~i~~~~~~l~~~ee~~ts~~~~vriykv~~~~ 737 (740)
||||+++||+|+||||||||||||+|.++++++++||||+||+|||+||++|+|+|||||||||+|||||||||+
T Consensus 644 fRvD~~asptmlNcLmYKmsYyrfge~~~~~~~~~GyDR~R~~eIg~Kd~~L~~~EEayTtehwlVRiYkvK~p~ 718 (751)
T KOG2292|consen 644 FRVDAEASPTMLNCLMYKMSYYRFGELYTEFNGPPGYDRVRNAEIGNKDFKLDHLEEAYTTEHWLVRIYKVKKPN 718 (751)
T ss_pred eecCCCCCHHHHHHHHHHHHhhhhhhhccccCCCCCcchhhhhhcCCCCCCchhhhhhhcccceEEEEEEecCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=100.00 E-value=1.2e-61 Score=577.01 Aligned_cols=679 Identities=23% Similarity=0.308 Sum_probs=458.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc---ccc-cccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCccccc-ccccchH
Q 004635 46 LRVSILGLVYILAFITRLFSV---LRY-ESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIG-GTLYPGL 120 (740)
Q Consensus 46 ~~~~iL~~i~~laf~iRl~~v---~~~-~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg-~t~yPgL 120 (740)
....+++.++.+++.+|.++- ..+ |..++|+|||||+|++|++++||+. ++++||+..||+|.+++ +|++|.+
T Consensus 17 ~~~~v~i~i~~~~f~v~~~~~~~~~~~~g~y~~e~Dpyy~~r~~~~~l~~g~~--~~~~~~~~~YP~G~~i~~~pl~~~l 94 (773)
T COG1287 17 KLLLVLIPILVLGFLVRAFTRSYAFDDPGVYFGEFDPYYHYRLIENLLKNGPP--RDFFDPYDNYPPGSPIDFPPLFLYL 94 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCcHHHHHHHHHHHHhCCC--ccCCChhhcCCCCCCCCCCchHHHH
Confidence 334445556666777777662 122 2588999999999999999999964 56889999999999987 6666666
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHHH
Q 004635 121 MVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVA 200 (740)
Q Consensus 121 ~~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~ 200 (740)
..+...+... ..+.+++++|.++||++|+|+++++|+++||+.|+++|++||++++++|+|++||++|++|||+.+
T Consensus 95 ~~~~~~~~~~----~~~~~~~~~~~~~PailG~L~vI~vYl~~r~i~~~~~g~~aa~ll~~~p~~~~rt~~G~~d~~~~~ 170 (773)
T COG1287 95 TAALGLILGS----IFPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALLLALAPGYLSRTVAGFYDTDMFE 170 (773)
T ss_pred HHHHHHHHHc----cCchHHHHHHHHhhHHHhhHHHHHHHHHHHHHhcchhhHHHHHHHHHhhHHHHHhhcCccCCCchH
Confidence 6555544443 234789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHH
Q 004635 201 IFALLLTFYLFVKAVN-----TGSLAWALASAFGYFYMVSAWGGYVFIINLIPLYVLVLLI-TGRYSMRLYVAYNCMYVL 274 (740)
Q Consensus 201 lf~~~l~~~l~i~al~-----~~~~~~~~lagl~~~l~~~~WgGy~~i~~~i~l~~~v~~l-~~r~~~~~~~~y~~~~~l 274 (740)
+++++++++++.++++ +|++.+++++|+++++++++|+|+.++++++.++++++.+ ..+..++....+.+..+.
T Consensus 171 ~~~~~~~l~~~~~aL~~~~~~~~~~~~~~lag~~~~l~~~sW~g~~~~~~i~l~~~~~~~v~~~~~~~~~~~~~~~~~v~ 250 (773)
T COG1287 171 LLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWGGYYYILAILLLYALVLLVLAFLRGKKTDILGFVGLVT 250 (773)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHcCCccchhhhhhhHH
Confidence 9999999999999987 4789999999999999999999999888888887777654 455555555555555555
Q ss_pred HHHHHhhh--ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 004635 275 GMLLAMQI--RFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKYMLSDTKLFQAFLRITVTSAIAVGALALGVGTASGYI 352 (740)
Q Consensus 275 g~~l~~~i--p~vg~~~~~s~~~~~a~~vf~ll~~~~~~~~l~~~l~~~k~~~~~~~~~i~~~~~ig~~~l~~l~~~g~~ 352 (740)
.++.++++ |..|+.+...+++....+...+.++.....+++..... +.+.......+..+++++.+...+.....+.
T Consensus 251 ~~~~~~l~~~~~~g~~~~~~~gf~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 329 (773)
T COG1287 251 LTLLSLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLLFSLVKNFELR-KFFAYLVPLTLSLALILGGLLLFLELLRAYI 329 (773)
T ss_pred HHHHHHHhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccceEeeeeeehHHHHHHHHHHHhccceEE
Confidence 55555555 67888887666665444333444444444444433222 2222333322222223333333333344566
Q ss_pred CChhhhhhhccccccccc-cCCccccccccCCCChhHHHHHhHHHHHHH--HHHHHHHhhcCCCchhHHHHHHHHHHHHH
Q 004635 353 SPWTGRFYSLLDPTYAKD-NIPIIASVSEHQPTAWSSFMFDFHILLFLF--PAGLYFCFKKLSDATIFIVMYGLTSMYFA 429 (740)
Q Consensus 353 ~p~~gr~~~ll~~~~~~~-~~Pi~~SVsEhqp~~w~~~~~~~~~~~~l~--~~Gl~~~~~~~~~~~lfllv~~~~~~y~a 429 (740)
.|.++|.+...+..+... .++.+.++.++++.++...+...++...+. +...+.+.++.+++++|+++|+++++|++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~v~s~y~~ 409 (773)
T COG1287 330 LPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAA 409 (773)
T ss_pred EeeccceeEeeeeeeeecchhhhhhhheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Confidence 778888877766655432 345555666666622222222222222222 33445566778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcccccccCCCCCCCCCCCCcccccCCCCcccchhHHHHHHHHHH
Q 004635 430 GVMVRLILVATPAVCLISAIAVSATIKNLTSL-LRTKSKTAVAGSSKGTGGSKASSKASFDQSQPFQKNGAIALLLGAFY 508 (740)
Q Consensus 430 ~~~vRf~~~lap~vailagi~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~i~~ 508 (740)
..|+||.++++|++|+++|++++.+.|.+... .+.... .... ..++.+.......+.................+
T Consensus 410 ~~~~Rf~~~~a~~vai~~g~~l~~~~e~l~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 484 (773)
T COG1287 410 LTQVRFAFYLAPAVAILAGIGLGQLLEILKLGRVEKANG----SAIS-LVASLADVAGFALSVKVLSAVPVLIVLASLAL 484 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----ccee-EEEEeccccccceeeeeeehhHHHHHHHHHHh
Confidence 99999999999999999999999999987654 221100 0000 00000000000000001111111111111111
Q ss_pred HHHhhhcchhhhhcccCCCcceeeeeccCCCccccchhHHHHHHHHHhcCCCC--CeeEEeccccchhheecCceeeecC
Q 004635 509 LLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPD--AKVMSWWDYGYQITAMGNRTVIVDN 586 (740)
Q Consensus 509 ll~~f~~~~~~~~~~~ys~Psiv~~~~~~~g~~~i~dD~~eAl~WLr~NTp~d--a~VmSWWDYGY~It~~a~R~tlaDn 586 (740)
-......+..+++..++..+.....+..++.++...|++.+...|..-+.|++ ..|+|||||||||+++++|.+.+|+
T Consensus 485 p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~swwd~g~~i~~~~~~~~~~~~ 564 (773)
T COG1287 485 PWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYADGYESPLAWEWFASPSLAIYAVNSWWDYGHWIVYVGDRIPVANP 564 (773)
T ss_pred HHHHhccccccccccccccccceEEeecCCCCcccccccCCccccchhhcccccccceeeeecCCeeEEEEEeecccccC
Confidence 11222223333332333333343444455555566777777775544445544 7899999999999999999999999
Q ss_pred CCCCcchhhhhhhhhcCCHHHHHHHHHhc----CCCEEEEEeCCccccCccchhhHHHHHHHhCCCCC-CCCCCC-----
Q 004635 587 NTWNNTHIATVGRAMSSYEDEAYEIMRSL----DVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFP-VIKEPD----- 656 (740)
Q Consensus 587 nt~n~t~Ia~vg~~las~E~~A~~Ilr~l----~vdYVlv~~gg~~~y~~dDi~Kf~wm~rIa~~~~~-~i~~~d----- 656 (740)
.++|..+++.-...+ ++|+++.++++++ +++||+++..+..|+..+|.++|+|+.|+..+..+ +.++.+
T Consensus 565 f~a~~~~~~~~~y~~-~~~~~a~~il~~~~~~~~~~yv~~~~~~~~~~~~~~~~~f~~~~~~~~~y~~~~~~~~~~~~~~ 643 (773)
T COG1287 565 FQAGILLIAQKFYTA-SSEEEALPILSKTDPSPDVRYVVLDIPRTIGKFYSDGAKFPWIPRSEDGYSTGEYKGGLNSNDN 643 (773)
T ss_pred ccccCcccccccccC-CchhhhhhhHHhhCCCCCCcEEEEeccccccccccccceeccccccccccceeEeeccccccch
Confidence 999988843333333 4489999999999 69999999988888888899999999999644333 333332
Q ss_pred --Cc-cCCceeccCCCCHhHHHHHhHhhh----hccccccccccCCCCccccccceeecCCC---CCCCcceeEEeeCCc
Q 004635 657 --YL-VNGDYRVDKGAAPKMLNCLMYKLS----YYRFGELVTEYGKPPGYDRARGVEIGNKD---IKLEHLEEAFTTSNW 726 (740)
Q Consensus 657 --y~-~~g~~~~~~~~~~~m~~slmykl~----y~~f~~~~~~~~~~~g~d~~r~~~i~~~~---~~l~~~ee~~ts~~~ 726 (740)
.+ +++++++++.....+++.-+++-+ |..=+ .+.+++-.+.+|+++++++.+.+ .+.+.+.|.-++++|
T Consensus 644 ~~~y~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~~~~-~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 722 (773)
T COG1287 644 SELYLNSGEVRLDEFDGFNLSHLRLVIESYKPVYEGGG-KVSAFGLVKIFEYVHGQIYTGTVARNYTVKITTTLVTSTGT 722 (773)
T ss_pred hhhhcccceeEEeccccccchhhheeeeccceeeccCC-ceeecceEEEEEeeccccccCcccccccceEEEEEEecccc
Confidence 33 377888887766666666666555 32222 22344556779999999876555 457888999999999
Q ss_pred EEEEEEecCCCC
Q 004635 727 IVRIYKVKPPNN 738 (740)
Q Consensus 727 ~vriykv~~~~~ 738 (740)
.+||++.++.+.
T Consensus 723 ~~~~~~~~~~~~ 734 (773)
T COG1287 723 TVGYTPGTYDDA 734 (773)
T ss_pred eEeecccccccc
Confidence 999999988653
No 3
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=100.00 E-value=3.1e-63 Score=565.68 Aligned_cols=473 Identities=33% Similarity=0.595 Sum_probs=302.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHH
Q 004635 46 LRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAA 125 (740)
Q Consensus 46 ~~~~iL~~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a 125 (740)
+..+++++++.++.+.|+++..+++..++|+|||||+|++|++++||+.+..+|||+++|||+|+++.. .|++....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dpyy~~r~~~~~~~~G~~~~~~~fd~~~~yP~G~~i~~--~pl~~~l~~ 79 (483)
T PF02516_consen 2 IFVVIFALIFRLAFYYRVFSVFDGGPYLNEFDPYYHYRLIEYIVNNGIFPFYNWFDPFTWYPWGRPIDW--PPLFPYLTA 79 (483)
T ss_dssp --------HHHHHHHHHHHHHTHHHHHHSS-GGGEETTEE--S-HHHHHHHHHHHHHHS---TTS---T--T-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhceeeeeeceeeeeCCCHHHHHHHHHHHHHcCCCcccCcCCccccCCCCCccCc--ccHHHHHHH
Confidence 345667778889999998887777888999999999999999999995556799999999999999842 234444546
Q ss_pred HHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHH
Q 004635 126 FIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALL 205 (740)
Q Consensus 126 ~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~ 205 (740)
.++.++..++ +.++.++|.++||++|+++++++|+++||++|+++|++||+++|++|+|++||++|++|||++++++++
T Consensus 80 ~~~~~~~~~~-~~~l~~v~~~~ppvl~~L~vi~~y~~~~~~~~~~~Gl~aA~l~a~~p~~l~RT~~G~~D~~~~~~~f~~ 158 (483)
T PF02516_consen 80 AFYAILGGFG-PVSLYEVAFWLPPVLGALTVIPVYLLGRRLGGRKAGLLAAFLLAISPGYLSRTMAGFYDHHMLELFFPL 158 (483)
T ss_dssp HHHHS-SS-H-H----HHHHHHHHHHGGGGHHHHHHHHHHTT-HHHHHHHHHHHTTSHHHHHTSSTT--SGGGGTTHHHH
T ss_pred HHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHhcCCCcccchHHHHHHH
Confidence 6677655443 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH--Hh
Q 004635 206 LTFYLFVKAVNTGS--LAWALASAFGYFYMVSAWGGY-VFIINLIPLYVLVLLITGRYSMRLYVAYNCMYVLGMLL--AM 280 (740)
Q Consensus 206 l~~~l~i~al~~~~--~~~~~lagl~~~l~~~~WgGy-~~i~~~i~l~~~v~~l~~r~~~~~~~~y~~~~~lg~~l--~~ 280 (740)
++++++++++|+++ +.+++++|+++++++++|+|+ .+..++++++++..++.+|++.+....++...++++++ .+
T Consensus 159 l~~~~~~~a~~~~~~~~~~~~laGl~~~l~~~~W~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 238 (483)
T PF02516_consen 159 LIIYFFLLALKSAKRPLIYAVLAGLALGLYALAWGGYQVFLLIFILLFVIYQLIFDRFSPKILILVGFSVLLATLLGGII 238 (483)
T ss_dssp HHHHHHHHHHHH------THHHHHHHHHHHHHHHS-GGHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876 999999999999999999999 88888889988888888888777666655444455444 56
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCChhhh
Q 004635 281 QIRFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKYM-LSDTKLFQAFLRIT-VTSAIAVGALALGVGTASGYISPWTGR 358 (740)
Q Consensus 281 ~ip~vg~~~~~s~~~~~a~~vf~ll~~~~~~~~l~~~-l~~~k~~~~~~~~~-i~~~~~ig~~~l~~l~~~g~~~p~~gr 358 (740)
.+++.|+.+.++.++....+++.++.+..+....+.. ..+.+.++...... +.....+....+..+...|.+.+++|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 318 (483)
T PF02516_consen 239 ALLFIGFYSFRSSSILGAFLVFGLALLLLLGGFLALILWLKSYSFISLFYPGILFAVLGLIGLVLFFLGFLGLIAPFLGI 318 (483)
T ss_dssp HHHHHHHHHST-HHHHHHHHHHHHHHHHHH--------------------------TTTTBG----HHHHHHHHHSSHHH
T ss_pred HHHHHhhcceecHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888877777777777777665555554443331 11112222221111 110011101111223345566677889
Q ss_pred hhhccccccccccCCccccccccCCCChhHHHHHhHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHH-HHH
Q 004635 359 FYSLLDPTYAKDNIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKKLSDATIFIVMYGLTSMYFAGVMVR-LIL 437 (740)
Q Consensus 359 ~~~ll~~~~~~~~~Pi~~SVsEhqp~~w~~~~~~~~~~~~l~~~Gl~~~~~~~~~~~lfllv~~~~~~y~a~~~vR-f~~ 437 (740)
++.++++.+.+...|...++.|||+.++.+++.+..+.++..|+|++++....+....+...+.....++...++| .+.
T Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (483)
T PF02516_consen 319 LYSLFGLEYAKSKRPILIFLLEWQPFGLYAYFFGFRFAIFAVPVGIIFLGLFLDYLFLFFRKISIIQIYFLQVIVLVLAL 398 (483)
T ss_dssp HHHHHHHHHHHTT-SSGGGGHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHSS------HHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876566778999999999999999999888888877778888544332222233334444667788888888 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCCCCCCCCcccccCCCCcccchhHHHHHHHHHHHHHhhhcch
Q 004635 438 VATPAVCLISAIAVSATIKNLTSLLRTKSKTAVAGSSKGTGGSKASSKASFDQSQPFQKNGAIALLLGAFYLLSKYATHC 517 (740)
Q Consensus 438 ~lap~vailagi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~i~~ll~~f~~~~ 517 (740)
.++|.++..+++......+... ....
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~---------------- 424 (483)
T PF02516_consen 399 LLAPAVAIIAAYAISPIISRDW--------------------------------------DEAL---------------- 424 (483)
T ss_dssp HHHHHHHHHHH-----SSTCCH--------------------------------------HHHH----------------
T ss_pred HHHHHHHHHHHHhhccchhhhh--------------------------------------hhhh----------------
Confidence 6777777776654332111000 0000
Q ss_pred hhhhcccCCCcceeeeeccCCCccccchhHHHHHHHHHhcCCCCCeeEEeccccchhheecCceeeecCC
Q 004635 518 TWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNN 587 (740)
Q Consensus 518 ~~~~~~~ys~Psiv~~~~~~~g~~~i~dD~~eAl~WLr~NTp~da~VmSWWDYGY~It~~a~R~tlaDnn 587 (740)
.|... ++.+. .+..+|||+||++|||+|||+|++|||||||||||+++|||+|++||+
T Consensus 425 ~~~~~---~~~~~---------~~~~~~~w~~al~~l~~~t~~~~~V~SWWDYGy~I~~~a~R~~~~DGg 482 (483)
T PF02516_consen 425 KWLKA---SINTS---------PPIMNDDWYDALEWLKENTPPDYVVMSWWDYGYWITYIAERPVVADGG 482 (483)
T ss_dssp HHHHT----EEEE---------T---SSSSSB--CHHH-CSGTT-EEEGGGCCHHHHCCCCGGEESHCTT
T ss_pred Hhhhh---hcccc---------ccccccccccccccccCCCCccceeeHHHHHhHHHHHhccceEEeCCc
Confidence 00000 00000 245689999999999999999999999999999999999999999996
No 4
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=99.58 E-value=9.2e-12 Score=140.47 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHHHHH
Q 004635 50 ILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYW 129 (740)
Q Consensus 50 iL~~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~i~~ 129 (740)
.++++.++++.+|+... . ...+ ++|.=+|...++.+.++|.+. +||.. .| |.+.+..+..++
T Consensus 3 ~~~~i~l~al~lRl~~L-g-~~~~-~~DEa~ya~~a~~ml~~g~~~----~~p~~-h~----------Pll~wl~A~~~~ 64 (439)
T TIGR03663 3 LVILIVLFALLLRLFEL-G-LRVF-HHDEAIHASFILKLLETGVYS----YDPAY-HG----------PFLYHITAAVFH 64 (439)
T ss_pred HHHHHHHHHHHHHHHhc-C-CCCC-CCCchhHHHHHHHHHhcCCCC----cCCCC-CC----------CHHHHHHHHHHH
Confidence 45677888999999984 2 2345 588888888999999998422 36642 11 446666666666
Q ss_pred HHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHH
Q 004635 130 TLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFY 209 (740)
Q Consensus 130 ~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~ 209 (740)
+ ||.+ +-..++.|+++| +.++++|++.|+..|+++|++||++++++|.++..|. +..+|+...++++++++
T Consensus 65 l---FG~s---e~a~RL~~aL~g-~~v~l~~~~~r~~~~~~~al~AAllla~sp~~~~~sr--~~~~D~~l~~f~~lal~ 135 (439)
T TIGR03663 65 L---FGIS---DATARLLPAVFG-VLLPLTAWLYRKRLGDNEVLWAAVLLAFSPVMVYYSR--FMRNDIFVAFFTLLAVG 135 (439)
T ss_pred H---hCCC---HHHHHHHHHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhHHHHHHHH--HHhHHHHHHHHHHHHHH
Confidence 5 6742 447788888888 5577788888888899999999999999999876665 45678999999999999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhhch
Q 004635 210 LFVKAVNTGSLAWALASAFGYFYMVSAWGG 239 (740)
Q Consensus 210 l~i~al~~~~~~~~~lagl~~~l~~~~WgG 239 (740)
+++++.++++..|..++|+++++++++++-
T Consensus 136 ~l~r~~~~~~~~~~~lag~~~gLa~ltKg~ 165 (439)
T TIGR03663 136 AAFRYLDTGKRRYLFLAASALALAFTSKEN 165 (439)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999854
No 5
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=98.93 E-value=1.7e-05 Score=93.19 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=87.9
Q ss_pred cCCCCCCCCccccc--ccccchHHHHHHHHHHHHHhhcchhHH-HHHHHHhhhH--HHHHHHHHHHHHHHHhcch-hHHH
Q 004635 100 FDSESWYPLGRIIG--GTLYPGLMVTAAFIYWTLRFLRFAVHI-REVCVLTAPF--FASNTTVVAYFFGKEIWDS-GAGL 173 (740)
Q Consensus 100 fD~~~wyP~Gr~vg--~t~yPgL~~~~a~i~~~l~~~g~~~~l-~~v~~~lppi--~~~ltvi~~yll~~~l~~~-~aGl 173 (740)
.|..+-||.=-.+= =.+||-+. ++.+|++.+.... .+ .-+..++-.+ ++++++.+.|+.+-.+.|. .+|+
T Consensus 63 ~dn~te~p~~IN~l~RfnlypEvi--l~~~yr~~~~~~~--~~~~P~yFYi~~Vf~l~g~~v~~Lf~~~~~lSgS~l~Gl 138 (642)
T PF10034_consen 63 NDNRTEYPRTINALQRFNLYPEVI--LAVLYRIFPSIQN--FLGEPVYFYIYSVFGLQGLYVTALFLYGWYLSGSWLGGL 138 (642)
T ss_pred cCCCccchhhhhHHHHhhhhHHHH--HHHHHHHHHHhhh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 58888898753331 13788776 6667888663211 11 2334444444 4668999999999999765 5777
Q ss_pred HHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhh--cc--HHHHHHHHHHHHHHHHhhchhHHHHHH
Q 004635 174 VAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNT--GS--LAWALASAFGYFYMVSAWGGYVFIINL 246 (740)
Q Consensus 174 ~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~--~~--~~~~~lagl~~~l~~~~WgGy~~i~~~ 246 (740)
++++..-+--+...|=.-.-.--|.++..++.+=.++....+|+ ++ ....++-.++...+.+.|+=..|++..
T Consensus 139 l~v~~f~fNh~e~TRV~~tpPLREnfA~Pf~~lQ~~~lt~~Lr~~~~~~~~~~~~~l~~st~~f~l~WQFsqFillt 215 (642)
T PF10034_consen 139 LTVLWFFFNHGETTRVMWTPPLRENFALPFFWLQMAALTYILRSNNRQSERKCLFALFVSTFFFMLTWQFSQFILLT 215 (642)
T ss_pred HHHHHHHHccccceeeeecCcchhhcccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777654444455433233334888888887777777666666 32 222223344455577899777766543
No 6
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=98.86 E-value=3.5e-06 Score=97.67 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=100.8
Q ss_pred CCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHH-HHHHHHHHHHHhhcchhHHHHHHHHhhhHHHH
Q 004635 75 EFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLM-VTAAFIYWTLRFLRFAVHIREVCVLTAPFFAS 153 (740)
Q Consensus 75 ~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~-~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ 153 (740)
..|.=.+...+++++++| ||..|..+ |.+- ..-|++. +..++.+++ ||. .+...++.+++++.
T Consensus 30 ~~DE~ryA~iareMl~sG-----dWlvP~~~---g~~y--~eKPPL~yWl~Als~~L---FG~---~~~a~RLpsaL~~~ 93 (552)
T PRK13279 30 QPDETRYAEISREMLASG-----DWIVPHFL---GLRY--FEKPIAGYWINSIGQWL---FGD---NNFGVRFGSVFSTL 93 (552)
T ss_pred CCchHHHHHHHHHHHHhC-----CcCccccC---CCcC--CCCCcHHHHHHHHHHHH---cCC---CcHHHHHHHHHHHH
Confidence 566667799999999998 57666542 3221 2346664 555555665 663 34566777777788
Q ss_pred HHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHH
Q 004635 154 NTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVN----TGSLAWALASAF 228 (740)
Q Consensus 154 ltvi~~yll~~~l~-~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~----~~~~~~~~lagl 228 (740)
++++.+|.++|+++ ++++|++|+++...++.....+..... |+...++..++++++..+.+ +++..+.++.|+
T Consensus 94 lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a~~--D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllGl 171 (552)
T PRK13279 94 LSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYAVL--DPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLGL 171 (552)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHH
Confidence 99999999999996 678999999999999987665554433 45545555554434433333 345666778899
Q ss_pred HHHHHHHhhc
Q 004635 229 GYFYMVSAWG 238 (740)
Q Consensus 229 ~~~l~~~~Wg 238 (740)
+.|+..++.|
T Consensus 172 a~Glg~LTKG 181 (552)
T PRK13279 172 ACGMGFMTKG 181 (552)
T ss_pred HHHHHHHhcc
Confidence 9999888884
No 7
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=98.73 E-value=0.0013 Score=78.61 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhcCCCCCeeEE----eccccchhheecCceeeecCC----C--------CCcchhhhhhhhhc-CCHHH
Q 004635 545 DDYREAYFWLRQNTPPDAKVMS----WWDYGYQITAMGNRTVIVDNN----T--------WNNTHIATVGRAMS-SYEDE 607 (740)
Q Consensus 545 dD~~eAl~WLr~NTp~da~VmS----WWDYGY~It~~a~R~tlaDnn----t--------~n~t~Ia~vg~~la-s~E~~ 607 (740)
++=.||.+|||||+|+|++|+. =.+|+.-++.++.|+|+.-=. . ..+++...+..+.+ +|++|
T Consensus 593 ~~d~~Ai~WLr~n~~g~~ViLeA~g~~Y~~~~rvSa~TGlpTVlGW~~He~~wR~~~~~~~~~~R~~dV~~IY~s~d~~~ 672 (723)
T TIGR03662 593 PEDAAAIRWLRQNIDGTPVILEAAGDSYTYASRVSAATGLPTVIGWAGHEWQWRGGVDETEVGERVDDVETIYTSGDPTE 672 (723)
T ss_pred cchHHHHHHHHhcCCCCCEEEecCCccccCCccchhhcCCcceecChhHHhHhcCCCChhhHHHHHHHHHHHHcCCCHHH
Confidence 4558999999999999999886 356777788899999886422 1 12233444566655 58999
Q ss_pred HHHHHHhcCCCEEEEE
Q 004635 608 AYEIMRSLDVDYVLVV 623 (740)
Q Consensus 608 A~~Ilr~l~vdYVlv~ 623 (740)
+.+++++.|+|||.|-
T Consensus 673 ~~~Ll~kY~V~YVyVG 688 (723)
T TIGR03662 673 ARELLERYGVDYVYVG 688 (723)
T ss_pred HHHHHHHcCCeEEEEC
Confidence 9999999999999983
No 8
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=98.68 E-value=1.5e-06 Score=90.81 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=83.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHH--
Q 004635 139 HIREVCVLTAPFFASNTTVVAYFFGKEIWD-SGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAV-- 215 (740)
Q Consensus 139 ~l~~v~~~lppi~~~ltvi~~yll~~~l~~-~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al-- 215 (740)
..+...++.+.++|+++++++|+++|++++ +.+|++|+++.+..|.++.=|. ..-+|+...++++++++++.+..
T Consensus 80 ~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr--~~~~D~~l~~f~~la~~~~~~~~~~ 157 (245)
T PF02366_consen 80 VNYWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSR--YALLDSILLFFILLAIYCLLRWYRY 157 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 345578899999999999999999999975 8999999999999999766544 46678999999999999999885
Q ss_pred ---hhccHHHHHHHHHHHHHHHHhh
Q 004635 216 ---NTGSLAWALASAFGYFYMVSAW 237 (740)
Q Consensus 216 ---~~~~~~~~~lagl~~~l~~~~W 237 (740)
++++..+.+++|++.|+.+++.
T Consensus 158 ~~~~~~~~~~~~l~gi~lGla~~~K 182 (245)
T PF02366_consen 158 QPFRRKWWLWLLLAGIALGLAILTK 182 (245)
T ss_pred cccccccHHHHHHHHHHHHHHHHhc
Confidence 3456788999999999999995
No 9
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=98.61 E-value=2.9e-06 Score=81.69 Aligned_cols=113 Identities=18% Similarity=0.265 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHH
Q 004635 120 LMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGV 199 (740)
Q Consensus 120 L~~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l 199 (740)
..+..+.++++ +|. .....++...+++.++++.+|.++|++.+++.+++++++.++.|....-+. ...+|.+
T Consensus 6 ~~~~~~~~~~l---~G~---~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~--~~~~~~~ 77 (159)
T PF13231_consen 6 YFLLLALFFKL---FGD---SVWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSA--SARPDML 77 (159)
T ss_pred HHHHHHHHHHH---hCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHH--HHhHHHH
Confidence 34555555565 553 344677889999999999999999999999999999999999999766555 4567999
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhchh
Q 004635 200 AIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGGY 240 (740)
Q Consensus 200 ~lf~~~l~~~l~i~al~~~~~~~~~lagl~~~l~~~~WgGy 240 (740)
.+++..+.+|++.|..++++..+.+++|++.++...+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~ 118 (159)
T PF13231_consen 78 LLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTF 118 (159)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888899999999888777543
No 10
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=98.58 E-value=0.00011 Score=84.52 Aligned_cols=168 Identities=12% Similarity=0.075 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHHHHHHHH
Q 004635 53 LVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLR 132 (740)
Q Consensus 53 ~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~i~~~l~ 132 (740)
+++++++.+|+.-+....... ..||..-+..+. +|.. .+.-++.+-||.- . |+....+.++++
T Consensus 70 ~l~~~~~i~ql~~i~~~~~~p-~~D~~~v~~~A~----~~~~--~~~~~Y~~~yPnn-------~-g~~l~~~~l~ki-- 132 (483)
T TIGR03766 70 VIFILLLILQLILVTALHPLI-GWDAGAVHTAAT----KSNE--SSISNYFSRNPNN-------L-FLLLFMHFLYKL-- 132 (483)
T ss_pred HHHHHHHHHHHHHHHHcCCCc-CcCHHHHHHHHh----cCCC--cccCceeeECCch-------H-HHHHHHHHHHHH--
Confidence 334456667877655555444 689976666565 2321 1222345556753 1 233444445555
Q ss_pred hhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHH
Q 004635 133 FLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFV 212 (740)
Q Consensus 133 ~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i 212 (740)
+|.+ ...+...+-.++...+++.+|.++|++.++++|.+|+++.++.|++..-... +=+|.+.+++..+.++++.
T Consensus 133 -fg~~--~~~~~~llNil~~~~si~liy~i~k~lf~~~~a~~a~~l~~l~~~~~~y~~~--~Ysd~~~l~~~~l~l~~~~ 207 (483)
T TIGR03766 133 -FGET--SWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALSPYILI--PYTDTWVLPFVSLFLFLYT 207 (483)
T ss_pred -hCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHH
Confidence 6642 3444567778888899999999999999999999999999999996543333 3456667777777766655
Q ss_pred HHHhh----ccHHHHHHHHHHHHHHHHhhchhHH
Q 004635 213 KAVNT----GSLAWALASAFGYFYMVSAWGGYVF 242 (740)
Q Consensus 213 ~al~~----~~~~~~~lagl~~~l~~~~WgGy~~ 242 (740)
...++ +++.+++++|++.++......-..+
T Consensus 208 ~~~~~~~~~~~~~~~Il~gillal~~~iKp~~iI 241 (483)
T TIGR03766 208 VISKKTDLRKKIALSILLGVLLAIAYFIKPSAII 241 (483)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 44442 3467889999999987777755443
No 11
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=98.53 E-value=0.00019 Score=84.77 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=80.2
Q ss_pred cchHHH-HHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCc
Q 004635 117 YPGLMV-TAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYD 195 (740)
Q Consensus 117 yPgL~~-~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D 195 (740)
||++.+ ..+++..+ +|.......+..++. -.++++.+|.++|++..+.+++++|++...+|.++.=-..+..-
T Consensus 4 YpPL~yyl~a~l~~l---~g~~~~Ay~l~~~L~---~~l~~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~rgni 77 (616)
T PF10131_consen 4 YPPLPYYLGALLSLL---FGNPIVAYKLFIFLA---FFLGGLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWRGNI 77 (616)
T ss_pred CCcHHHHHHHHHHHH---hCCHHHHHHHHHHHH---HHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 777874 44444444 343334444444443 33467779999999988899999999999999976543444455
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 004635 196 NEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAW 237 (740)
Q Consensus 196 ~e~l~lf~~~l~~~l~i~al~~~~~~~~~lagl~~~l~~~~W 237 (740)
.|.++..++.+.++...+..++|+..+.++.+++++++..++
T Consensus 78 ~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~lsH 119 (616)
T PF10131_consen 78 PETLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLALSH 119 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Confidence 688888777777777777777777667777777777766655
No 12
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=1.3e-05 Score=93.38 Aligned_cols=170 Identities=18% Similarity=0.189 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHH-HHHHHHHHH
Q 004635 52 GLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLM-VTAAFIYWT 130 (740)
Q Consensus 52 ~~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~-~~~a~i~~~ 130 (740)
.++.+++...++.... +.......++ ++...++++.++| +|+.|..+ |..- .-.|+++ ++.+..+.+
T Consensus 11 ~llll~~~~~~l~~l~-~~~~~~~de~-~~~~~~~~m~~s~-----~w~~~~~~---g~~~--~~kPPl~~Wl~a~~~~l 78 (535)
T COG1807 11 WLLLLIALALLLPGLG-SRPLWDPDEA-RYAEIAREMLESG-----DWFTPQLL---GLPY--FEKPPLVYWLQALSYLL 78 (535)
T ss_pred HHHHHHHHHHHhCccc-cCCCCCCCch-hHHHHHHHHHHcC-----CCcceeeC---Cccc--cCCCcHHHHHHHHHHHH
Confidence 3444455566665532 2333333444 4588999999998 45555543 4332 2456675 555555665
Q ss_pred HHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHH
Q 004635 131 LRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYL 210 (740)
Q Consensus 131 l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l 210 (740)
||. -.-..+...++.++++++.+|.++|+++++++|++|+++++..|..+.=+ ...-.|+..++|..+.+++
T Consensus 79 ---fG~---~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~~~a~~aali~~~~p~~~~~~--~~~~~D~~l~~f~~la~~~ 150 (535)
T COG1807 79 ---FGV---NEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIG--RLALLDAALAFFLTLALAL 150 (535)
T ss_pred ---cCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--HHHhhhHHHHHHHHHHHHH
Confidence 662 23355666677788999999999999999999999999999999976633 3455688889999999999
Q ss_pred HHHHHhhc-cHHHHHHHHHHHHHHHHhhchhH
Q 004635 211 FVKAVNTG-SLAWALASAFGYFYMVSAWGGYV 241 (740)
Q Consensus 211 ~i~al~~~-~~~~~~lagl~~~l~~~~WgGy~ 241 (740)
+.++.+.+ +..+..++|++.|+..++.|--.
T Consensus 151 ~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~ 182 (535)
T COG1807 151 LYLALRARGKLKWLLLLGLALGLGFLTKGPGA 182 (535)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHhchHH
Confidence 99887764 77788899999999999985544
No 13
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=8.9e-05 Score=86.41 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=125.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccch
Q 004635 40 KQQELLLRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPG 119 (740)
Q Consensus 40 ~~~~~l~~~~iL~~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPg 119 (740)
++..++-..+.++++.++++.+|+.-+..-..++ +|.-..-..+.+.++|-++ +|- .-|+|.
T Consensus 27 ~~~~~l~~~~~~~~lt~l~f~~Rf~ki~~p~~VV--wDE~HfGkf~S~Yl~~~ff-----~Dv--HPPlgK--------- 88 (723)
T KOG3359|consen 27 RRVKSLKEKLLVVLLTVLAFITRFYKIATPNHVV--WDEAHFGKFASYYLNNIFF-----FDV--HPPLGK--------- 88 (723)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhccCCCeEE--EecccccchHHHHhcCcee-----ecc--CchHHH---------
Confidence 3344444556667888899999998854433333 3442223344555566432 453 123331
Q ss_pred HHHHHHHHHHHHHhhc---c--------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhh
Q 004635 120 LMVTAAFIYWTLRFLR---F--------AVHIREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYIS 187 (740)
Q Consensus 120 L~~~~a~i~~~l~~~g---~--------~~~l~~v~~~lppi~~~ltvi~~yll~~~l~-~~~aGl~AA~l~Ai~P~~i~ 187 (740)
++.++.-.+.+.-| . +-..+...+++++.+|+++++++|++.||++ +..+++++|++.++=-+++.
T Consensus 89 --mL~al~g~L~GydG~f~f~~~g~~~~~~~~y~~mR~f~a~lgsl~vp~~y~t~~~~~~s~~aa~l~allv~~dns~~T 166 (723)
T KOG3359|consen 89 --MLIALVGYLAGYDGSFDFQSIGEYYPNGVPYVGMRLFSALLGSLTVPLAYLTLKELGFSRLAAALAALLVLFDNSLVT 166 (723)
T ss_pred --HHHHHHHHHhCCCCCccccCCCccCCCCCchHhHHHHHHHHHhHHHHHHHHHHHHhcccHHHHHHHHHHHhhcccchh
Confidence 22222222221111 0 1135667899999999999999999999996 67889999999888777655
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHH--hhcc-----HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 004635 188 RSVAGSYDNEGVAIFALLLTFYLFVKAV--NTGS-----LAWALASAFGYFYMVSAWGGYVFIINLIPLYVLVL 254 (740)
Q Consensus 188 RS~~G~~D~e~l~lf~~~l~~~l~i~al--~~~~-----~~~~~lagl~~~l~~~~WgGy~~i~~~i~l~~~v~ 254 (740)
=|. +.-=|+..+|+++.++|+++|.- +.+. +.|..++|+++|....+.--..|++..++++++..
T Consensus 167 ~sr--~ILLDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vGlft~~~Vgl~~v~~ 238 (723)
T KOG3359|consen 167 LSR--FILLDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVGLFTIALVGLYTVRE 238 (723)
T ss_pred hhh--HHHHhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhhHHHHHHHHHHHHHH
Confidence 333 45668999999999999999965 3321 66889999999998876644455666666666553
No 14
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0001 Score=81.05 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHHHHH
Q 004635 50 ILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYW 129 (740)
Q Consensus 50 iL~~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~i~~ 129 (740)
..+.+..+++.+|++.. ....+| +|.=-|--.+..++++|-++ |+|-. .| |-|...-...++
T Consensus 17 ~v~~vv~~Al~~RL~~L--g~r~~h-~DEs~~~~w~Lk~l~~Gaw~----YrPi~--------HG---PfL~hvn~avF~ 78 (556)
T COG4745 17 AVIAVVAIALLARLYNL--GLRPFH-FDESRHATWILKYLEQGAWS----YRPIY--------HG---PFLYHVNYAVFG 78 (556)
T ss_pred hHHHHHHHHHHHHHHhc--CCCccc-cchhhHHHHHHHHHhcCcce----ecccc--------cC---chhhhhhhhhhh
Confidence 34556667889999973 234565 67666666566667888533 44432 22 235545555555
Q ss_pred HHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhh--hhhhcccCCCchhHHHHHHHHHH
Q 004635 130 TLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPG--YISRSVAGSYDNEGVAIFALLLT 207 (740)
Q Consensus 130 ~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~--~i~RS~~G~~D~e~l~lf~~~l~ 207 (740)
+ +|. -.-.++++|++.|++.....+++-+|+++.. -++.+.++|++|. |++| |..||.+..+|++++
T Consensus 79 ~---lGa---sDataRlvvAv~G~llpL~awL~R~rL~d~e-vlal~~LLA~sPvlVYYSR----FmR~Dl~la~ftl~a 147 (556)
T COG4745 79 L---LGA---SDATARLVVAVTGVLLPLTAWLYRTRLGDKE-VLALATLLAFSPVLVYYSR----FMRNDLLLAAFTLLA 147 (556)
T ss_pred h---ccc---chhhhhhhHHHhhhHHHHHHHHHHHhccchH-HHHHHHHHhcChhhhhHHH----HHhhhHHHHHHHHHH
Confidence 5 563 4557899999999999999999999987755 4556667799999 5666 679999999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHH
Q 004635 208 FYLFVKAVNTGSLAWALASAFGYFYM 233 (740)
Q Consensus 208 ~~l~i~al~~~~~~~~~lagl~~~l~ 233 (740)
+.+.+|++++++..+.-+++..+++.
T Consensus 148 Vg~~vR~lDt~R~~yL~~sA~~lalA 173 (556)
T COG4745 148 VGFAVRYLDTERFRYLYASAVSLALA 173 (556)
T ss_pred HHHHHHHhhcccccchhhhhhhhhhh
Confidence 99999999998765555555544443
No 15
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.3e-05 Score=89.82 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHHHH
Q 004635 49 SILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIY 128 (740)
Q Consensus 49 ~iL~~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~i~ 128 (740)
+..+++.++++.+|..-+.....++ +|.=....-+.+.++|-+ .||. ++|+|.- ..++..
T Consensus 25 ~~~~~lt~ls~~~R~~~i~~~~~VV--fdE~hfgkFaS~Yl~~~~-----~fDv--HPPL~km-----------l~al~~ 84 (699)
T COG1928 25 LGPVLLTVLSFIVRFWKIGNPNTVV--FDEAHFGKFASYYLNGTP-----FFDV--HPPLGKM-----------LIALVG 84 (699)
T ss_pred eehhHHHHHHHHHHHHhcCCCCeEE--EeeeeeccchHHhhcCCc-----cccc--CCcHHHH-----------HHHhhh
Confidence 4556778889999998764443333 333111233334445432 2554 4455422 122222
Q ss_pred HHHH---hhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhcccCCCc
Q 004635 129 WTLR---FLRFAV---------HIREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYD 195 (740)
Q Consensus 129 ~~l~---~~g~~~---------~l~~v~~~lppi~~~ltvi~~yll~~~l~-~~~aGl~AA~l~Ai~P~~i~RS~~G~~D 195 (740)
++.+ .+..+. ..+...+++.+++|++|++++|+++|+++ +..++++++++.++=-+++.=|. +.-
T Consensus 85 ~L~g~~g~f~f~~~g~~~~~~~~~y~~mR~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~sR--~IL 162 (699)
T COG1928 85 GLEGYDPPFDFQLIGLTEYPFGYNYVGMRFFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVTESR--FIL 162 (699)
T ss_pred hhhccCCCcccccCCcccccCCCChHHHHHHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhhhhH--HHH
Confidence 3221 111110 14556799999999999999999999996 56789999999888777655333 345
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHH
Q 004635 196 NEGVAIFALLLTFYLFVKAVNT-----GSLAWALASAFGYFYMVSAW-GGYVFIINLIPLYVLVL 254 (740)
Q Consensus 196 ~e~l~lf~~~l~~~l~i~al~~-----~~~~~~~lagl~~~l~~~~W-gGy~~i~~~i~l~~~v~ 254 (740)
-|...+|++..+.|++++..+. +...+.+++|+++|....+. -| .|....+++.++..
T Consensus 163 LDs~LlfF~~~~~y~~~r~~~~~p~s~~w~~~Ll~tGisLGcaiS~KwvG-lft~~~vgl~~v~~ 226 (699)
T COG1928 163 LDSFLLFFIVAAAYCFLRFHRQQPFSRRWLKWLLLTGISLGCAISVKWVG-LFTTGVVGLLAVYE 226 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhcceeeeEEEeeehh-HHHHHHHHHHHHHH
Confidence 6899999999999999997653 34678889999999876543 33 24444555555443
No 16
>PLN02816 mannosyltransferase
Probab=97.57 E-value=0.11 Score=60.59 Aligned_cols=139 Identities=13% Similarity=0.234 Sum_probs=87.0
Q ss_pred HHHHHHHhhhcccccccCCCCchHHHH-HHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHHHHHHHHhh
Q 004635 56 ILAFITRLFSVLRYESMIHEFDPYFNY-RTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFL 134 (740)
Q Consensus 56 ~laf~iRl~~v~~~~~~i~~~Dpyy~~-r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~i~~~l~~~ 134 (740)
.+.+.+|+...+--...+| .|.||++ .-+.+++ .|+ ++..| =|-|. +-+.++|.+.. .++++++.+
T Consensus 43 ~~~~~~R~~~al~~~t~f~-pDE~fQslE~ah~~v-fG~-G~lTW----Ew~~~---lRS~~~Pll~a---~~~~~~~~l 109 (546)
T PLN02816 43 LFCLAFRVVNALLIQTYFN-PDEHWQSLEVAHRTI-FGY-GYMTW----EWKRG---IRSYLHPMLFA---FLYKLLQVT 109 (546)
T ss_pred HHHHHHHHHHHHHccccCC-CCchhhhHHHHHHHH-hCC-cccce----ecCCC---ccchhHHHHHH---HHHHHHHHh
Confidence 3444566666432234454 8999987 5555554 333 22333 11232 22346787654 356666666
Q ss_pred cch--hHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhh---hhhhcccCCCchhHHHHHHHHHHHH
Q 004635 135 RFA--VHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPG---YISRSVAGSYDNEGVAIFALLLTFY 209 (740)
Q Consensus 135 g~~--~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~---~i~RS~~G~~D~e~l~lf~~~l~~~ 209 (740)
|.+ .-+..+.+.+..++++++-.-+|.++++..|+.+|..+.++...++. +..||... +++..+.++.++
T Consensus 110 ~~~~~~~~~~~pRl~~al~sal~D~~l~kl~~~~~g~~~A~~~L~~sl~swf~~y~~sRTfSN-----slEt~Lt~lAL~ 184 (546)
T PLN02816 110 GLDTPYIMIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSN-----CLETVLTIMGLY 184 (546)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhCccchh-----HHHHHHHHHHHH
Confidence 542 33456678888899999999999999999988888888777777774 45676543 556666666666
Q ss_pred HHH
Q 004635 210 LFV 212 (740)
Q Consensus 210 l~i 212 (740)
+|.
T Consensus 185 ~w~ 187 (546)
T PLN02816 185 YWP 187 (546)
T ss_pred Hhh
Confidence 653
No 17
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=97.57 E-value=0.0023 Score=63.82 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=74.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcch--------------hHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHH
Q 004635 139 HIREVCVLTAPFFASNTTVVAYFFGKEIWDS--------------GAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFAL 204 (740)
Q Consensus 139 ~l~~v~~~lppi~~~ltvi~~yll~~~l~~~--------------~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~ 204 (740)
++-...-++.++++++++..+|+..+++.++ .+|+++|+..++++.+..-++.+. -.+++.++.
T Consensus 38 ~ia~~vNl~Sal~sA~tv~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~lv~al~fafS~sfW~~Av~aE--VYal~~l~~ 115 (178)
T PF11028_consen 38 NIAWRVNLLSALSSALTVLFLFWSITRLLRKLPEEPSTAQTIAILGAGLVGALAFAFSDSFWFQAVEAE--VYALSSLFT 115 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHH
Confidence 4444456788999999999999999999766 799999999999999887664332 245577788
Q ss_pred HHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 004635 205 LLTFYLFVKAVNT----GSLAWALASAFGYFYMVSAWGGYVFIINLIPLYVLV 253 (740)
Q Consensus 205 ~l~~~l~i~al~~----~~~~~~~lagl~~~l~~~~WgGy~~i~~~i~l~~~v 253 (740)
.+.+|+.+|-.++ ++-.|.++.+...|+.. |-....+..+|..+.+
T Consensus 116 al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~---g~H~~~ll~lP~~~~~ 165 (178)
T PF11028_consen 116 ALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSL---GVHLLNLLALPAIALL 165 (178)
T ss_pred HHHHHHHHHHhhhccccccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8888887775443 34445555455555433 1223334455544443
No 18
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=97.49 E-value=0.27 Score=57.98 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=81.9
Q ss_pred CCCCccccc---ccccchHHHHHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHh--cchhHHHHHHHHH
Q 004635 105 WYPLGRIIG---GTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEI--WDSGAGLVAAAFI 179 (740)
Q Consensus 105 wyP~Gr~vg---~t~yPgL~~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l--~~~~aGl~AA~l~ 179 (740)
.+|.|.... |.+||.-. +|.+++.+|.|.=+ +=++.=.++=.+...-++.+++++ +++...++||+..
T Consensus 41 ~~~~GqlqNQayGYLFP~G~-----Ff~l~~~lglP~Wi--~QRLWwallL~vaf~G~~rLa~~L~igs~~~r~~Aa~~Y 113 (680)
T PF11847_consen 41 TFPFGQLQNQAYGYLFPMGP-----FFALGDLLGLPDWI--TQRLWWALLLTVAFWGALRLARALGIGSPASRVLAAVAY 113 (680)
T ss_pred CCCCccccccceeeeccchH-----HHHHhhhccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 356664432 56777433 45566667765322 223222333334556677888888 5677899999999
Q ss_pred HHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHH
Q 004635 180 AICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNT--GSLAWALASAFGYFYM 233 (740)
Q Consensus 180 Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~--~~~~~~~lagl~~~l~ 233 (740)
|++|-.+.. .|..--|.+-..+.-..+.-++++++. ....+++.++++..+|
T Consensus 114 aLsPr~Ltt--lg~iSse~lP~al~PWvLlPlv~~~r~~~~~rr~aa~salaV~~m 167 (680)
T PF11847_consen 114 ALSPRVLTT--LGAISSETLPMALAPWVLLPLVRALRGRGSPRRAAARSALAVALM 167 (680)
T ss_pred HhChHHHHH--HHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHH
Confidence 999998874 777778988888888888888888765 3456777788887776
No 19
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=97.36 E-value=0.027 Score=68.76 Aligned_cols=49 Identities=31% Similarity=0.479 Sum_probs=44.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCee-EEeccccchhh--eecCceeeecCCC
Q 004635 540 NRVIFDDYREAYFWLRQNTPPDAKV-MSWWDYGYQIT--AMGNRTVIVDNNT 588 (740)
Q Consensus 540 ~~~i~dD~~eAl~WLr~NTp~da~V-mSWWDYGY~It--~~a~R~tlaDnnt 588 (740)
.+.....|..++.|+|.|+.+...+ .+||||||||+ +-++|+..+|+..
T Consensus 473 ~~~~~~~~~~a~p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~~~~ 524 (773)
T COG1287 473 VPVLIVLASLALPWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYADGYE 524 (773)
T ss_pred hHHHHHHHHHHhHHHHhccccccccccccccccceEEeecCCCCcccccccC
Confidence 3567899999999999999999999 99999999999 8888888888765
No 20
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.10 E-value=0.25 Score=55.90 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=91.9
Q ss_pred HHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHHHHHHHHhhc
Q 004635 56 ILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFLR 135 (740)
Q Consensus 56 ~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~i~~~l~~~g 135 (740)
.+.+..|+....--.... ..|.+|++--.-...-+|. ++.+| |-..-+| -|+ ..+|.+.... ++.++.++
T Consensus 4 ~~ll~~R~~~a~~~~~~f-~pDE~fq~~E~ah~~~~g~-g~~tW-E~~~~~~-iRS---~~~p~i~~~~---~~~~~~~~ 73 (418)
T PF03901_consen 4 LLLLAFRLLNALFPQTSF-HPDEYFQSLEPAHRLVFGY-GYLTW-EWSPFPG-IRS---WLFPLIFAIP---YKLLARLG 73 (418)
T ss_pred HHHHHHHHHHHHhccCCC-CCCcccccHHhhhhhhcCc-cchhh-hhccCCC-CCC---hHHHHHHHHH---HHHHHHHh
Confidence 445567776643222222 5899997733333333443 22233 1111122 233 3677666443 34444443
Q ss_pred --chhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHH
Q 004635 136 --FAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVK 213 (740)
Q Consensus 136 --~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~ 213 (740)
.+.....+.+.+..++++++-...|-..++..+.+++..+.++.+.++.... .+...-.+.++..+.++.++++.+
T Consensus 74 ~~~~~~~~~~~Rl~~~~~s~~~d~~~~~~~~~~~~~~~a~~~l~l~~~s~~~~~--~~~Rtlsns~e~~l~~~al~~~~~ 151 (418)
T PF03901_consen 74 LDSPWAVFYAPRLVLALLSALSDYYLYRLVKRLFGSSVALWALLLSLFSWFMFY--YSSRTLSNSFETILVLLALYLWLR 151 (418)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhHHHhhhHHHH--hhcccCccHHHHHHHHHHHHHHHH
Confidence 2344666788888899999999999988888888889999999888888544 222345578888888888888887
Q ss_pred HH
Q 004635 214 AV 215 (740)
Q Consensus 214 al 215 (740)
..
T Consensus 152 ~~ 153 (418)
T PF03901_consen 152 SL 153 (418)
T ss_pred hh
Confidence 54
No 21
>COG5305 Predicted membrane protein [Function unknown]
Probab=97.08 E-value=0.013 Score=67.73 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=89.9
Q ss_pred ccccCCCCCCCCccccc---------ccccchHHHHHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Q 004635 97 WNWFDSESWYPLGRIIG---------GTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIW 167 (740)
Q Consensus 97 ~~wfD~~~wyP~Gr~vg---------~t~yPgL~~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~ 167 (740)
.-|+|+..-+|-|+.+. ....|++.+..+=.+.. .|| +.+.+.+-+|.+++++++..+|-++|++.
T Consensus 68 ~l~l~~~~~~~~s~~~~~~v~~lll~~~~~~PLYfll~h~W~~--lF~---~s~~~~Rsls~L~~~~ai~~~y~l~r~l~ 142 (552)
T COG5305 68 YLWLDEFQSISASKTVIETVLSLLLELLVHPPLYFLLAHFWMA--LFG---NSLLASRSLSALLSALAIPLVYWLGRELF 142 (552)
T ss_pred hhhhhhcccCCCcccccchHHHHHhccCCCCCeeehHHHHHHH--Hhc---hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888443 33456665554433332 366 67789999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 004635 168 DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNT 217 (740)
Q Consensus 168 ~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~ 217 (740)
++..|++||.++|++|-++..+. ...+-.+.+...+....+.+++.+.
T Consensus 143 ~~~~a~la~~~~AisP~~i~~~q--e~R~y~L~~~~~lis~~~Ll~ai~~ 190 (552)
T COG5305 143 GSTTALLAAALMAISPFHIFYSQ--EARSYALAVATTLISATLLLRAIRL 190 (552)
T ss_pred HhhHHHHHHHHHccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999988654 3456778888888888999999875
No 22
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.02 E-value=0.34 Score=55.44 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=62.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 004635 140 IREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTG 218 (740)
Q Consensus 140 l~~v~~~lppi~~~ltvi~~yll~~~l~-~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~~ 218 (740)
+..++..+.-+...++....|-++++.. +++.+..|+++.+++|+-+.=| ++| +|++..++....+++..+. +
T Consensus 111 l~~~~~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~PasiF~s-a~Y--sEslf~~lsf~gl~~~~~~---~ 184 (443)
T PF04188_consen 111 LLNSGILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASIFLS-APY--SESLFALLSFAGLYLLERG---R 184 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHHHhh-cCc--cHHHHHHHHHHHHHHHHhc---c
Confidence 4444556666777889999999998875 6789999999999999966543 334 6988888777777776543 2
Q ss_pred cHHHHHHHHHHHHHHHHhhch
Q 004635 219 SLAWALASAFGYFYMVSAWGG 239 (740)
Q Consensus 219 ~~~~~~lagl~~~l~~~~WgG 239 (740)
...+|+..++...+...
T Consensus 185 ----~~~a~~~~~la~~~Rsn 201 (443)
T PF04188_consen 185 ----WWLAGLLFALATLTRSN 201 (443)
T ss_pred ----HHHHHHHHHHHHHHHhh
Confidence 22344455555555543
No 23
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=95.75 E-value=1.3 Score=52.89 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=76.8
Q ss_pred CCchHHHHHHH---HHHHhcCccccccccCC-----CCCCCCcccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004635 75 EFDPYFNYRTT---LFLTEKGFYEFWNWFDS-----ESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVL 146 (740)
Q Consensus 75 ~~Dpyy~~r~~---~~l~~~G~~~~~~wfD~-----~~wyP~Gr~vg~t~yPgL~~~~a~i~~~l~~~g~~~~l~~v~~~ 146 (740)
+-|.|=|+--+ ....+.| +||++ +..||.=| -||++.+...+....+ .|.++..+.+|.+
T Consensus 30 g~Dt~gHl~K~~~l~~~l~~G-----~wy~~w~~~WY~G~pflr-----YypPl~Yli~aal~~l--~~d~~~t~~v~~~ 97 (801)
T COG5617 30 GIDTYGHLFKAWFLYHSLKDG-----NWYPPWCEYWYNGYPFLR-----YYPPLSYLIGAALNFL--LGDVVTTYAVFLM 97 (801)
T ss_pred cccccceeeehHHHHHHHhcC-----CCCCCcchhhhcCCCcce-----ecCcHHHHHHHHHHHh--hcChhHHHHHHHH
Confidence 36777666444 3344555 33333 23345543 3788875544332321 4655666667766
Q ss_pred hhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 004635 147 TAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNT 217 (740)
Q Consensus 147 lppi~~~ltvi~~yll~~~l~-~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~ 217 (740)
+.- +.....|++.+..+ ....++++|++.-.+|.++--+-.+-.=.-+.++-+..+.++++.+.++.
T Consensus 98 la~----llG~~~~~~~r~~g~t~~ia~I~alL~ltsp~~l~vlf~EGniP~v~~i~f~pl~l~~l~~~~~~ 165 (801)
T COG5617 98 LAF----LLGAGGWLLWRLRGRTGFIALISALLWLTSPENLKVLFIEGNIPRVLAIGFGPLALGLLERFLER 165 (801)
T ss_pred HHH----HHHHHHHHHHHhhccccchHHHHHHHHHhChhheEEEEecCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 644 45556677766554 45789999999999999876544333334566777777777777777753
No 24
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.22 Score=53.82 Aligned_cols=174 Identities=17% Similarity=0.125 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-cccccCC-CCchHHHHHHHHH----HH-hcCcccccc-ccCCCCC-------------
Q 004635 47 RVSILGLVYILAFITRLFSVL-RYESMIH-EFDPYFNYRTTLF----LT-EKGFYEFWN-WFDSESW------------- 105 (740)
Q Consensus 47 ~~~iL~~i~~laf~iRl~~v~-~~~~~i~-~~Dpyy~~r~~~~----l~-~~G~~~~~~-wfD~~~w------------- 105 (740)
..+++.+...+...+|-.|.. .+..... =.|.+++...++. .. .|+..+++. --+|+++
T Consensus 27 ~~~vial~~~i~~~v~~yp~~~~f~~~~gyIsdEv~y~~~arn~i~~~~~~~~~~~yft~t~~p~v~~~i~~e~~k~~~~ 106 (438)
T COG4346 27 KVVVIALGALIEKSVREYPTIPEFSPKLGYISDEVWYVTYARNIIWEFAERNMLKEYFTVTPFPGVNYTIPVENYKIFAV 106 (438)
T ss_pred hHHHHHHHHHHhhhHhhCCCCCccCccCCcceeeEeechhHhHHHHHHHHhhhccceEEecCCcccceecchhhhhhhhH
Confidence 344455566677778888743 2222211 2455555555555 12 234333221 2345666
Q ss_pred ---------------CCCccccc---ccccchHH-HHHHHHHHHHHhhcchhHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Q 004635 106 ---------------YPLGRIIG---GTLYPGLM-VTAAFIYWTLRFLRFAVHIREVCVLTA-PFFASNTTVVAYFFGKE 165 (740)
Q Consensus 106 ---------------yP~Gr~vg---~t~yPgL~-~~~a~i~~~l~~~g~~~~l~~v~~~lp-pi~~~ltvi~~yll~~~ 165 (740)
||+-..+- .+.-|+|- ...|+..-+. ..| .|--+| .+.|+++.+.+|+.+++
T Consensus 107 ~~~~~~~~~i~~Gy~YPdeeni~~Y~N~EHPpLgKyIiAl~ml~~---d~P-----l~WRiPsiIe~~liliiv~~~~~k 178 (438)
T COG4346 107 ELKGEVSIIIRPGYKYPDEENIHKYYNTEHPPLGKYIIALGMLIV---DKP-----LYWRIPSIIEGALILIIVYFVAYK 178 (438)
T ss_pred hhccccceEeecCCCCCchhhHHhhcCcCCCcHHHHHHHHHHHHh---cCC-----ceeeccHHHhhhHHHHHHHHHHHH
Confidence 67655542 56678775 3333222211 111 222233 47899999999999999
Q ss_pred hcc-hhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Q 004635 166 IWD-SGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAW 237 (740)
Q Consensus 166 l~~-~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~~~~~~~~lagl~~~l~~~~W 237 (740)
+.+ ..+|++||+++|+=|-... +.|-.--|.-.-||..+..||.. ++| . ..+|+++|+.+++.
T Consensus 179 i~~~~la~~~aA~~~alDp~l~a--mg~VAMLDIhvaFFtaL~~~fl~---~~R-~---l~sgiAlGLAAs~K 242 (438)
T COG4346 179 IARSPLAGLIAALLAALDPLLRA--MGGVAMLDIHVAFFTALFMYFLA---NDR-P---LWSGIALGLAASVK 242 (438)
T ss_pred HhcCchHHHHHHHHHhhCcHHHH--hcchhHHHHHHHHHHHHHHHHHh---cCC-e---ehHHHHHHHHHHHh
Confidence 965 8999999999999997544 44433233334455555555542 333 3 23466777777666
No 25
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=95.16 E-value=12 Score=46.37 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcc-h--hHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 004635 139 HIREVCVLTAPFFASNTTVVAYFFGKEIWD-S--GAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAV 215 (740)
Q Consensus 139 ~l~~v~~~lppi~~~ltvi~~yll~~~l~~-~--~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al 215 (740)
.+.....++..+=-.++.+.+|++.|+... + .+.+++|++.|++-..+.... .. ...-.+.++.+.++..-|.+
T Consensus 87 ~~~~~~~~~~~lk~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~--~~-~fld~~i~lPL~llgie~~~ 163 (843)
T PF09586_consen 87 QMPYAILLLIILKIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSF--NI-MFLDAMILLPLLLLGIERLL 163 (843)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhh--hH-HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566888889999998864 5 899999999998866555321 01 11114445566667777788
Q ss_pred hhccHH
Q 004635 216 NTGSLA 221 (740)
Q Consensus 216 ~~~~~~ 221 (740)
++|+..
T Consensus 164 ~~~k~~ 169 (843)
T PF09586_consen 164 KEKKWW 169 (843)
T ss_pred hcCCcc
Confidence 887753
No 26
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=94.81 E-value=3.9 Score=45.71 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=67.4
Q ss_pred cchHHHHHHHH-HHHHHhhcchh-HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhcccCCC
Q 004635 117 YPGLMVTAAFI-YWTLRFLRFAV-HIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSY 194 (740)
Q Consensus 117 yPgL~~~~a~i-~~~l~~~g~~~-~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~ 194 (740)
||++.+....+ .++.+.+|.+. .....+++.-.++.++.+ |+..|.....+ ..++++++.|..++ .++++
T Consensus 95 y~p~~Ylp~alGi~ig~ll~l~~~~~~~l~Rl~nll~~~~l~---~~Ai~~~p~~k---~l~~~i~l~Pm~~~--~~aS~ 166 (389)
T PF09913_consen 95 YPPLYYLPQALGIWIGRLLGLSVLVMYYLGRLFNLLLYALLV---YLAIKLAPRGK---WLLALIALLPMTLF--QAASV 166 (389)
T ss_pred CCcHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHcchhH---HHHHHHHHHHHHHH--HHHhc
Confidence 88887554443 44455565443 345567766666555444 44444442222 33777788999777 45567
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhh
Q 004635 195 DNEGVAIFALLLTFYLFVKAVNTG--SLAWALASAFGYFYMVSAW 237 (740)
Q Consensus 195 D~e~l~lf~~~l~~~l~i~al~~~--~~~~~~lagl~~~l~~~~W 237 (740)
-.|++.+.+..+.+.++++..+++ +....++.+++.++.+.+.
T Consensus 167 s~D~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~l~v~~~ll~~~K 211 (389)
T PF09913_consen 167 SYDGLIIALAFLFIALLLRLYRKKKITRRDLILLGVLAVLLALSK 211 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 778887777777777777743332 2334455566666666666
No 27
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=94.50 E-value=0.55 Score=52.48 Aligned_cols=115 Identities=21% Similarity=0.194 Sum_probs=69.2
Q ss_pred CchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHH-HHHHHHhhcchhHHHHHHHHhhhHHHH-
Q 004635 76 FDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAF-IYWTLRFLRFAVHIREVCVLTAPFFAS- 153 (740)
Q Consensus 76 ~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~-i~~~l~~~g~~~~l~~v~~~lppi~~~- 153 (740)
-|.-||.+++|..-++-+ ..| ||+. |..|||...+.. +.......+. +...+.+....+++.
T Consensus 9 mDEiFHipQaq~YC~g~f---~~W-DpKI----------TTpPGLYlls~~~l~~~~~~~~~--~~~~~LR~~N~l~~~~ 72 (379)
T PF04922_consen 9 MDEIFHIPQAQAYCRGRF---TEW-DPKI----------TTPPGLYLLSVAALFPGSWFFGC--SSLSVLRSTNLLFALV 72 (379)
T ss_pred ccchhhhHHHHHHHhchh---hhh-CCcc----------CCCchHHHHHHHHHhhHHHhhcc--cchHHHHHHHHHHHHH
Confidence 377899999999987744 345 6654 467899877665 2222111222 333335666665555
Q ss_pred HHHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHH
Q 004635 154 NTTVVAYFFGKEIW--DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTF 208 (740)
Q Consensus 154 ltvi~~yll~~~l~--~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~ 208 (740)
.....++-..+... ........|+-++..|....=| +-|=||...+++.+++.
T Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~~~a~~ialfPllfFFs--fLYYTDv~St~~VL~~y 127 (379)
T PF04922_consen 73 VLPWLIYRILRFLNPRRSRKAILSALNIALFPLLFFFS--FLYYTDVWSTTFVLLMY 127 (379)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHhh--HHHHhcHHHHHHHHHHH
Confidence 22222333233222 1256778888899999966633 34668888888877666
No 28
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=94.31 E-value=2.5 Score=48.45 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=66.3
Q ss_pred cccccchHHHHHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhccc
Q 004635 113 GGTLYPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVA 191 (740)
Q Consensus 113 g~t~yPgL~~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~-~~~aGl~AA~l~Ai~P~~i~RS~~ 191 (740)
|.+.-| +....+-+|++ ++. . ....+++.++-+++++++|.++|+.. +++.|++.++...++|+...-..
T Consensus 39 g~HfsP-il~ll~Ply~l---~Ps---~-~tLli~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~- 109 (449)
T PF09852_consen 39 GDHFSP-ILYLLAPLYRL---FPS---P-LTLLIVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANL- 109 (449)
T ss_pred cccchH-HHHHHHHHHHH---hCC---H-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhh-
Confidence 444444 44455567887 443 2 24566888888999999999999997 88999999999999999776433
Q ss_pred CCCchh--HHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 004635 192 GSYDNE--GVAIFALLLTFYLFVKAVNTGSLAWALASA 227 (740)
Q Consensus 192 G~~D~e--~l~lf~~~l~~~l~i~al~~~~~~~~~lag 227 (740)
+|=| ++++.+++++++ +++++++...+++.
T Consensus 110 --~dFH~~~~avPll~~~~~----~~~~~r~~~~~~~~ 141 (449)
T PF09852_consen 110 --FDFHPVAFAVPLLLWALY----ALERRRWRLFILWA 141 (449)
T ss_pred --CCCcHHHHHHHHHHHHHH----HHHhCcHHHHHHHH
Confidence 4533 444444444444 44555655554443
No 29
>KOG4587 consensus Predicted membrane protein [Function unknown]
Probab=92.10 E-value=2.1 Score=48.27 Aligned_cols=70 Identities=26% Similarity=0.382 Sum_probs=48.5
Q ss_pred ccchhHHHHHHHHHhcCCCCCeeEEeccccchhhee------cCceeeecCCCCCcchhhhhh---------hhhcC-CH
Q 004635 542 VIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAM------GNRTVIVDNNTWNNTHIATVG---------RAMSS-YE 605 (740)
Q Consensus 542 ~i~dD~~eAl~WLr~NTp~da~VmSWWDYGY~It~~------a~R~tlaDnnt~n~t~Ia~vg---------~~las-~E 605 (740)
.-+||-.+-++|+|.||.+||+..- ..-.| +.||- -||+|-...| .+.+. ..
T Consensus 460 ~Sn~dqe~l~eWIk~nTk~DAVFAG------~mp~ma~VkLttlRPI------VNHpHyE~~gireRT~~VYSmySrk~~ 527 (605)
T KOG4587|consen 460 KSNDDQESLLEWIKLNTKRDAVFAG------PMPIMATVKLTTLRPI------VNHPHYEMRGIRERTEHVYSMYSRKQS 527 (605)
T ss_pred cCCCCHHHHHHHHHhcCcccceeec------cCceeeEEeeeecccc------cCCchhhhhhHHHHHHHHHHHhccccH
Confidence 3579999999999999999997321 11122 23443 3567766555 12333 45
Q ss_pred HHHHHHHHhcCCCEEEEE
Q 004635 606 DEAYEIMRSLDVDYVLVV 623 (740)
Q Consensus 606 ~~A~~Ilr~l~vdYVlv~ 623 (740)
+|-++++.+++|+|.+..
T Consensus 528 ~ev~~~~~~lkvnY~i~~ 545 (605)
T KOG4587|consen 528 SEVYNQCAQLKVNYLIIS 545 (605)
T ss_pred HHHHHHHHHhCCcEEEEE
Confidence 889999999999998874
No 30
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=91.70 E-value=0.53 Score=53.83 Aligned_cols=178 Identities=18% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchHHHHHHHHHHHHHhhcchh-HHHHHHHHhhhHH
Q 004635 73 IHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFLRFAV-HIREVCVLTAPFF 151 (740)
Q Consensus 73 i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL~~~~a~i~~~l~~~g~~~-~l~~v~~~lppi~ 151 (740)
.|++|||+.+-+.+-...+-+.. + .+-|+.|--+-.-.||+|..... .|+ --.+...-++++.
T Consensus 114 vh~~~P~~r~~ms~af~y~~yPv----~--~~~y~~~~~v~~~~Y~~L~~ll~----------lP~~~ef~~~f~V~AF~ 177 (536)
T COG5650 114 VHGFDPYVRYNMSKAFRYMHYPV----L--GTPYQTGGYVIYFSYPGLSALLF----------LPVLFEFNPFFKVLAFL 177 (536)
T ss_pred ecCCCccchhhhhhhheeEeecc----c--cCcccccceEEEEEecchhhhcc----------CccccccchhhhHHHHH
Confidence 58899998877665533332211 1 25566765555556888875421 221 0111122233444
Q ss_pred HHHHHHHHHHHH-HHhcchhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 004635 152 ASNTTVVAYFFG-KEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGY 230 (740)
Q Consensus 152 ~~ltvi~~yll~-~~l~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~~~~~~~~lagl~~ 230 (740)
.++..+.+.... +++.+ .+.+.+.+.+.+| ++.=...+-. |.+..|+++.+..+ |.|. .+||+++
T Consensus 178 ~A~~~l~~i~~~r~gl~~--~~~~~valv~as~-~v~f~v~~~~--DtI~~ffla~a~v~-----r~rP----~lAGvl~ 243 (536)
T COG5650 178 LALIWLLVIYFIRKGLAG--SRVLDVALVAASP-LVGFAVFTVF--DTIWAFFLAAALVC-----RGRP----KLAGVLI 243 (536)
T ss_pred HHHHHHHHHHHHHhcccc--cceeeeeeeeccc-eEEEEEecch--hHHHHHHHHHHHHh-----cCCc----hHHHHHH
Confidence 445445555555 44444 3456666777788 5554454444 56677777766555 4444 4566666
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhhhcccc
Q 004635 231 FYMVSAWGGYVFIINLIPLYVLVLLITGRYSMRLYVAYNCMYVLGMLLAMQIRFVG 286 (740)
Q Consensus 231 ~l~~~~WgGy~~i~~~i~l~~~v~~l~~r~~~~~~~~y~~~~~lg~~l~~~ip~vg 286 (740)
|+..+.. -++ .+.+.| ++.++.+.+..|....+....++ +.+....||+=
T Consensus 244 Gls~a~K-~~P-~Ivl~p---ll~~~~keyg~~~a~~f~~~aa~-t~lLvN~PfiI 293 (536)
T COG5650 244 GLSSAFK-QIP-LIVLPP---LLYLIYKEYGLRPAIKFIATAAI-TWLLVNLPFII 293 (536)
T ss_pred HHHHHhh-cCc-hhhHHH---HHHHHHHhcCcchHHHHHHHHHH-HHHHHcCceEE
Confidence 6655444 111 222222 12233344444555554443332 33445556543
No 31
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=91.58 E-value=4.6 Score=46.39 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=26.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004635 411 LSDATIFIVMYGLTSMYFAGVMVRLILVATPAVCL 445 (740)
Q Consensus 411 ~~~~~lfllv~~~~~~y~a~~~vRf~~~lap~vai 445 (740)
.++..+++++|..++.+....++||. ++++++++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~rf~-~~~~p~~~ 364 (483)
T PF02516_consen 331 KRPILIFLLEWQPFGLYAYFFGFRFA-IFAVPVGI 364 (483)
T ss_dssp T-SSGGGGHHHHHHHHHHHHH-GGGG-GGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45666789999999999999999999 55555555
No 32
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=89.92 E-value=28 Score=38.98 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=25.7
Q ss_pred CCcceeeeecc-CCCccccchhHHHHHHHHHhcCCCC
Q 004635 526 SSPSIVLAARG-AHGNRVIFDDYREAYFWLRQNTPPD 561 (740)
Q Consensus 526 s~Psiv~~~~~-~~g~~~i~dD~~eAl~WLr~NTp~d 561 (740)
+++|+.+.... .++.|..+|+=.++..||++|.+++
T Consensus 243 ~p~s~~L~~~~~~~~~~~~~~~Ev~ga~Wl~~~~~~~ 279 (367)
T PF09971_consen 243 PPTSISLDKNSDKNSYPYFNDSEVFGAKWLSKNRNNS 279 (367)
T ss_pred CCCceeeccCcccccceecchhhhhHHHHHHhcCCCC
Confidence 45555554322 1236888899999999999998887
No 33
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=51 Score=37.71 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=62.0
Q ss_pred HHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccc-cCCCCCCCCcccccccccchHHHHHHHHHHHHHhhcch
Q 004635 59 FITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNW-FDSESWYPLGRIIGGTLYPGLMVTAAFIYWTLRFLRFA 137 (740)
Q Consensus 59 f~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~w-fD~~~wyP~Gr~vg~t~yPgL~~~~a~i~~~l~~~g~~ 137 (740)
...|+.+. .+ .+|++-|.-|||+-=..++-+|. ++..| +.| .= .+..-.|=.++...+ +-..+.||.
T Consensus 22 ls~Rl~sA-~~-~iI~DCDEvfNYWEPLHyllyG~-GfQTWEYSP-----~y-aiRSy~Yillh~~pg--~~~a~~fg~- 89 (568)
T KOG2515|consen 22 LSLRLCSA-TF-SIISDCDEVFNYWEPLHYLLYGE-GFQTWEYSP-----EY-AIRSYAYILLHYVPG--YFVAKLFGL- 89 (568)
T ss_pred HHHHHHHH-HH-HhhhcchhhhhcchhhhhHhhcc-cccceeeCc-----hh-HHHHHHHHHHHHcch--HHHHHhcCC-
Confidence 35566652 22 35778999999976555544443 33345 122 10 111112222333322 122233553
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHhhhhhhhcc
Q 004635 138 VHIREVCVLTAPFFASNTTVVAYFFGKEI---WDSGAGLVAAAFIAICPGYISRSV 190 (740)
Q Consensus 138 ~~l~~v~~~lppi~~~ltvi~~yll~~~l---~~~~aGl~AA~l~Ai~P~~i~RS~ 190 (740)
+-..+.-++=..+|..+++.=+.+-+++ .|...|-..-++.-+++|.+.-|.
T Consensus 90 -~ki~vFy~vR~~Lg~fsai~E~~l~~ai~~kf~~~ia~~~i~f~~fssGmF~aSt 144 (568)
T KOG2515|consen 90 -SKILVFYFVRLCLGFFSAIMETYLYKAICRKFGLAIARIWIIFLLFSSGMFHAST 144 (568)
T ss_pred -CceEeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeec
Confidence 2222334444566666666666666666 355677777777888888776554
No 34
>PF10060 DUF2298: Uncharacterized membrane protein (DUF2298); InterPro: IPR018746 Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modelled by the signatures in this entry represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present. The function is unknown.
Probab=80.35 E-value=1.2e+02 Score=35.15 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhhcccccccCCCCchHHHHHHHHHHHhcCccccccccCCCCCCCCcccccccccchH-HHHHHHHHHHH
Q 004635 53 LVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYPGL-MVTAAFIYWTL 131 (740)
Q Consensus 53 ~i~~laf~iRl~~v~~~~~~i~~~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~vg~t~yPgL-~~~~a~i~~~l 131 (740)
..+++...+|.+.-. +++-|-+-++-..+-+.+... .+..|| ||+-|... |-.. ++..+.+-++
T Consensus 61 ~~F~~~~~~R~~~P~-----i~g~EK~MD~afl~ai~rs~~---lPP~Dp--WfAG~~in----YYY~G~~l~a~l~~L- 125 (473)
T PF10060_consen 61 AAFLFFLWLRAFNPD-----IWGGEKFMDFAFLNAILRSPT---LPPYDP--WFAGGPIN----YYYFGHVLMAALAKL- 125 (473)
T ss_pred HHHHHHHHHHHhCCc-----cccccchhhHHHHHHHHcCCC---CCCCCC--ccCCCccC----cccHHHHHHHHHHHH-
Confidence 345566677776521 223444445555566666543 356777 77776553 3333 4555555555
Q ss_pred HhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchh
Q 004635 132 RFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSG 170 (740)
Q Consensus 132 ~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~~ 170 (740)
.|. ....+.-+..|.+.++++...|.+++++.+++
T Consensus 126 --tG~--~~~vayNLala~~~al~~~~a~~l~~~l~~~~ 160 (473)
T PF10060_consen 126 --TGV--PPEVAYNLALATLFALAFTGAFGLAYNLLARR 160 (473)
T ss_pred --HCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455 34445556668899999999999999986544
No 35
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=70.15 E-value=1.3e+02 Score=30.52 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcch----hHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 004635 154 NTTVVAYFFGKEIWDS----GAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALASAFG 229 (740)
Q Consensus 154 ltvi~~yll~~~l~~~----~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~~~~~~~~~lagl~ 229 (740)
..+..++.+.|+...+ ....++.++.+..|. .. ..+.-..|.+..+++...++++. |+|.. ++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~--~~~~gq~~~l~~~l~~~a~~~~~---r~r~~----~agv~ 102 (241)
T PF09594_consen 33 ALALAVRLLLRRLGRRKPPGRALLLALLLLAFPPV-LS--ALGLGQFDLLVAALLLLALLALR---RGRPW----LAGVL 102 (241)
T ss_pred HHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHH-HH--HHHhccHHHHHHHHHHHHHHHHH---cCCCh----HHHHH
Confidence 3444577777777543 122333345555555 22 23334557666666666665553 33444 45666
Q ss_pred HHHHHHhh
Q 004635 230 YFYMVSAW 237 (740)
Q Consensus 230 ~~l~~~~W 237 (740)
.++.....
T Consensus 103 lgla~~~K 110 (241)
T PF09594_consen 103 LGLAAAIK 110 (241)
T ss_pred HHHHHHHH
Confidence 66655444
No 36
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=69.38 E-value=1.7e+02 Score=31.57 Aligned_cols=90 Identities=10% Similarity=0.143 Sum_probs=46.2
Q ss_pred HhhhHHHHH-HHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhhhcccCCCchh--HHHHHHHHHHHHHHHHHHhhccH
Q 004635 146 LTAPFFASN-TTVVAYFFGKEIW--DSGAGLVAAAFIAICPGYISRSVAGSYDNE--GVAIFALLLTFYLFVKAVNTGSL 220 (740)
Q Consensus 146 ~lppi~~~l-tvi~~yll~~~l~--~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e--~l~lf~~~l~~~l~i~al~~~~~ 220 (740)
++|.+++.+ .++..+.+.|.+. ++....+.+.++...|.+.+--.. .+|.. ++++++..+.+++. ++++
T Consensus 50 pl~~iLs~~~la~s~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~~lsy-~~~s~~~~ls~~l~~la~~~~----~k~~- 123 (319)
T PF14264_consen 50 PLPQILSILFLALSAVLLVRLFDIKSSFISVLFSLLFISSPFFLENLSY-RFDSLPMALSLLLAVLAFYFL----KKSK- 123 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHH-HHccHHHHHHHHHHHHHHHHH----hhhh-
Confidence 344445443 3444444444442 345566777778888886542211 13443 44555555555555 2223
Q ss_pred HHHHHHHHHHHHHHHhhchhH
Q 004635 221 AWALASAFGYFYMVSAWGGYV 241 (740)
Q Consensus 221 ~~~~lagl~~~l~~~~WgGy~ 241 (740)
.+.+++.+.........+.+.
T Consensus 124 ~~~~~~~~ll~~sl~~YQa~~ 144 (319)
T PF14264_consen 124 IGFLISILLLVLSLGIYQASI 144 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544
No 37
>COG3463 Predicted membrane protein [Function unknown]
Probab=68.07 E-value=1.7e+02 Score=33.38 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=50.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhhhhhhhcccCCCchhHH--HHHHHHHHHHHHH
Q 004635 143 VCVLTAPFFASNTTVVAYFFGKEIWD-SGAGLVAAAFIAICPGYISRSVAGSYDNEGV--AIFALLLTFYLFV 212 (740)
Q Consensus 143 v~~~lppi~~~ltvi~~yll~~~l~~-~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l--~lf~~~l~~~l~i 212 (740)
....++.++=++.+.++|+++||..+ ++-|++=+.+-.+.|.-.. ...+|=|.. ++.+..+.+|++.
T Consensus 89 ~Lll~Q~i~ials~~p~y~lA~eil~~E~~al~isilYll~p~i~g---i~~FDFH~m~~avp~~~~a~~f~~ 158 (458)
T COG3463 89 TLLLIQAIAIALSSLPIYLLAKEILNGEKEALAISILYLLNPYIEG---INLFDFHPMAFAVPLFLLAYYFLK 158 (458)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcccHHHHHHHHHHHhchhccC---chhhhcchHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999865 9999999999988888443 235777655 5555555556553
No 38
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=61.32 E-value=1e+02 Score=34.91 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=75.0
Q ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhhhhhhcccCCCc
Q 004635 117 YPGLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDS-GAGLVAAAFIAICPGYISRSVAGSYD 195 (740)
Q Consensus 117 yPgL~~~~a~i~~~l~~~g~~~~l~~v~~~lppi~~~ltvi~~yll~~~l~~~-~aGl~AA~l~Ai~P~~i~RS~~G~~D 195 (740)
+|.+.+....+-+++. ......+..+..-+.-.+++..+|.+.|..++. +.+-.|-.+...+|..+.- .+++-.
T Consensus 96 ~p~~~y~i~ii~~L~~----~~~~~l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa~i~~~~~P~~i~~-s~iw~~ 170 (420)
T COG5542 96 FPLYLYWIRIINKLLS----SLYFILAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFATILVILSPSVIYN-SAIWGQ 170 (420)
T ss_pred CchHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhheEEEEEeccHHHhh-hhHHhc
Confidence 5666666666655532 123444566666777889999999999999875 6777777777778886664 456668
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhch
Q 004635 196 NEGVAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYMVSAWGG 239 (740)
Q Consensus 196 ~e~l~lf~~~l~~~l~i~al~~~~~~~~~lagl~~~l~~~~WgG 239 (740)
+|.+..++..+.+|++.. ++. +-+++..++..+...-
T Consensus 171 teSlf~ll~~l~iyf~~~----k~~---~~a~~~faLa~l~Rsn 207 (420)
T COG5542 171 TESLFTLLSILAIYFFSI----KKQ---IPALFFFALATLFRSN 207 (420)
T ss_pred cchHHHHHHHHHHHHHHc----cch---hHHHHHHHHHHHhccc
Confidence 899999999888888842 222 3334455555555533
No 39
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=50.11 E-value=23 Score=39.84 Aligned_cols=38 Identities=29% Similarity=0.233 Sum_probs=25.3
Q ss_pred hh-cCCHHHHHHHHHhcCCCEEEEEeCCccccCccchhhH
Q 004635 600 AM-SSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKF 638 (740)
Q Consensus 600 ~l-as~E~~A~~Ilr~l~vdYVlv~~gg~~~y~~dDi~Kf 638 (740)
+. +.||+++.||+++.||+||.+-.--.-.|| -|..||
T Consensus 622 ~YST~~~~K~~Ei~~KY~V~Yv~~G~~Er~~yS-~~~~KF 660 (684)
T COG5427 622 VYSTTDAAKRAEILEKYDVTYVWVGPVERARYS-IPDLKF 660 (684)
T ss_pred eeecCcHHHHHHHHHhcCceEEEEchHHhhhcC-Cccccc
Confidence 44 458999999999999999876321122343 444554
No 40
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=46.77 E-value=5 Score=48.41 Aligned_cols=61 Identities=30% Similarity=0.574 Sum_probs=35.3
Q ss_pred CEEEEEeCCccc------------cCccchhhHHHHHHHhCCCCC--CCCCCCCccCCceeccCCCCHhHHHHHhHhhhh
Q 004635 618 DYVLVVFGGVTG------------YSSDDINKFLWMVRIGGGVFP--VIKEPDYLVNGDYRVDKGAAPKMLNCLMYKLSY 683 (740)
Q Consensus 618 dYVlv~~gg~~~------------y~~dDi~Kf~wm~rIa~~~~~--~i~~~dy~~~g~~~~~~~~~~~m~~slmykl~y 683 (740)
.|+|-+||-.++ |=.+||.|+--+ -|+ |+. |-++ ..-+|++.-=.-+.||||||||
T Consensus 184 ~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp------~YRsPEMI--Dlys--g~pI~eKsDIWALGclLYkLCy 253 (738)
T KOG1989|consen 184 NYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTP------QYRSPEMI--DLYS--GLPIGEKSDIWALGCLLYKLCY 253 (738)
T ss_pred CEEeCcccccccccCCCccHHHHHHHHHHHHhhCCc------cccChHHH--hhhc--CCCCcchhHHHHHHHHHHHHHH
Confidence 488889986422 224666665432 222 211 2221 1235555556889999999999
Q ss_pred cc--ccc
Q 004635 684 YR--FGE 688 (740)
Q Consensus 684 ~~--f~~ 688 (740)
|. |.+
T Consensus 254 ~t~PFe~ 260 (738)
T KOG1989|consen 254 FTTPFEE 260 (738)
T ss_pred hCCCcCc
Confidence 64 444
No 41
>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]
Probab=45.85 E-value=1.2e+02 Score=34.46 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=53.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHH
Q 004635 142 EVCVLTAPFFASNTTVVAYFFGKEIW-DSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKA 214 (740)
Q Consensus 142 ~v~~~lppi~~~ltvi~~yll~~~l~-~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~a 214 (740)
.+++.+--++-.++....|.+++.+. +++...-|+++..+.|+-+.-|. || .|.+.-++.+..+++..+.
T Consensus 126 i~~~~vn~~~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAsIF~ts-~Y--SEsLfa~~s~~Gi~~~~~~ 196 (444)
T KOG2647|consen 126 ISAVLVNIFFFMLAAVALYQLTRIILHDPKISFYAALLFCFNPASIFLTA-GY--SESLFALFSFLGILFLEKG 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchHhhhhH-Hh--hHHHHHHHHHHHHHHHhcC
Confidence 35666666778899999999999985 66999999999999999777554 33 4888777777777766543
No 42
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=41.88 E-value=2.2e+02 Score=26.09 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhh
Q 004635 150 FFASNTTVVAYFFGKEIWDS-GAGLVAAAFIAICPG 184 (740)
Q Consensus 150 i~~~ltvi~~yll~~~l~~~-~aGl~AA~l~Ai~P~ 184 (740)
++|.+.+...|.+++++..+ -.|++||+=......
T Consensus 6 ~~GG~av~~~~ii~~~~~~k~~GGifAA~PaV~las 41 (108)
T PF11345_consen 6 LLGGLAVVAAYIISRKLPPKSFGGIFAAFPAVFLAS 41 (108)
T ss_pred eeccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHH
Confidence 46889999999999999877 799998875444444
No 43
>KOG2642 consensus Alpha-1,2 glucosyltransferase/transcriptional activator [Posttranslational modification, protein turnover, chaperones; Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=36.88 E-value=21 Score=39.21 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHHhcCccccccccCCCCCCCCccc
Q 004635 76 FDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRI 111 (740)
Q Consensus 76 ~Dpyy~~r~~~~l~~~G~~~~~~wfD~~~wyP~Gr~ 111 (740)
-|.-||.-+|+-..+.- |+| ||+.-=|.|--
T Consensus 34 mDEiFHi~Qtq~yc~g~----wsW-dP~ITTpPglY 64 (446)
T KOG2642|consen 34 MDEIFHITQTQRYCSGN----WSW-DPLITTPPGLY 64 (446)
T ss_pred hhhHhhhHHHHHHhcCC----CCC-CcccCCCCeeE
Confidence 47889999999887654 344 88765555533
No 44
>COG4485 Predicted membrane protein [Function unknown]
Probab=33.82 E-value=9e+02 Score=29.58 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=28.4
Q ss_pred ccCCCchhHH--------HHH-HHHHHHHHHHHHHhhcc-HHHHHH-----HHHHHHHHHHhhchhH
Q 004635 190 VAGSYDNEGV--------AIF-ALLLTFYLFVKAVNTGS-LAWALA-----SAFGYFYMVSAWGGYV 241 (740)
Q Consensus 190 ~~G~~D~e~l--------~lf-~~~l~~~l~i~al~~~~-~~~~~l-----agl~~~l~~~~WgGy~ 241 (740)
..|-+|++-+ .++ +++..++|.+++.|-+. .+++.+ ++...-+.-+.|+|..
T Consensus 279 fig~~Dtt~F~a~pmiyVgi~P~~l~v~~f~~ksir~~vk~lfa~l~~f~iisfy~q~ldl~wqGmh 345 (858)
T COG4485 279 FIGPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTAFFIISFYSQYLDLFWQGMH 345 (858)
T ss_pred cCCcccceeeccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4566676422 444 55666677778777642 222222 3333334567899854
No 45
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=33.16 E-value=1e+03 Score=29.42 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=8.1
Q ss_pred CCCcccccccccch
Q 004635 19 AMNLESDLFSNFSF 32 (740)
Q Consensus 19 ~~~~~~~~~~~~~~ 32 (740)
+++|-.|.++.+++
T Consensus 57 ~~glG~~~~~~~~y 70 (843)
T PF09586_consen 57 SNGLGGDFFGTFSY 70 (843)
T ss_pred cccCCcchHhHHHH
Confidence 45566666666654
No 46
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=27.60 E-value=1.3e+03 Score=28.83 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.6
Q ss_pred hHHHHHHHHHH
Q 004635 263 RLYVAYNCMYV 273 (740)
Q Consensus 263 ~~~~~y~~~~~ 273 (740)
|+++...++++
T Consensus 35 Rl~Ls~~~v~L 45 (810)
T TIGR00844 35 KLYIGESMVAS 45 (810)
T ss_pred hcCCcHHHHHH
Confidence 44555555544
No 47
>PRK02509 hypothetical protein; Provisional
Probab=25.83 E-value=9.3e+02 Score=30.59 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhh-hhh-----------cccCCCchhHH
Q 004635 171 AGLVAAAFIAICPGY-ISR-----------SVAGSYDNEGV 199 (740)
Q Consensus 171 aGl~AA~l~Ai~P~~-i~R-----------S~~G~~D~e~l 199 (740)
..+.|.+++...-+| +.| .-+||.|.|..
T Consensus 286 ~~L~a~~~ll~A~~ywL~Ry~LL~S~~G~v~GAgYTDv~a~ 326 (973)
T PRK02509 286 YGLGGALMLTLALSHWLARYELLYSTRGVVYGAGYTDVHVQ 326 (973)
T ss_pred HHHHHHHHHHHHHHHHHhhHhheecCCCEEecCChhhheeH
Confidence 455566666566554 333 46888888644
No 48
>PRK00068 hypothetical protein; Validated
Probab=25.75 E-value=1.1e+03 Score=29.98 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=7.2
Q ss_pred cccCCCchhHH
Q 004635 189 SVAGSYDNEGV 199 (740)
Q Consensus 189 S~~G~~D~e~l 199 (740)
+-+||.|-|..
T Consensus 246 ~GA~YTDv~a~ 256 (970)
T PRK00068 246 TGASYTDINAV 256 (970)
T ss_pred ecCChHhhhhH
Confidence 46777777654
No 49
>PF10797 YhfT: Protein of unknown function; InterPro: IPR019733 This entry contains predicted inner membrane proteins, whose function is unknown.
Probab=25.35 E-value=7.3e+02 Score=28.13 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=46.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhc----ccCC---CchhHHHHHHHHHHHHHH
Q 004635 143 VCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRS----VAGS---YDNEGVAIFALLLTFYLF 211 (740)
Q Consensus 143 v~~~lppi~~~ltvi~~yll~~~l~~~~aGl~AA~l~Ai~P~~i~RS----~~G~---~D~e~l~lf~~~l~~~l~ 211 (740)
....-.|+..+++++|.--++++. +.+-|++++....+.-....|- ..|. .+.|..+++.-++.+..+
T Consensus 126 l~~vg~PVi~aFa~FPalAI~yQf-G~KkG~it~~v~ll~r~~~~~~g~~~~~~~~~~L~peg~all~Gmi~li~f 200 (420)
T PF10797_consen 126 LGQVGTPVIVAFALFPALAIAYQF-GWKKGAITAVVTLLVRQLVVKFGPFTIGGSSISLNPEGMALLVGMIMLIGF 200 (420)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHH-hhHHhHHHHHHHHHHHHHHHhhcceeccCccceeCchHHHHHHHHHHHHHH
Confidence 344556888899999999999995 6667778777766655555542 1111 267999888776665554
No 50
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=23.95 E-value=58 Score=35.10 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=42.7
Q ss_pred eecCceeeecCCCCCcchhhhhhhhh--cCC--HHHHHHHHH-------hcCCCEEEEEeCCccccCccchhhHHH
Q 004635 576 AMGNRTVIVDNNTWNNTHIATVGRAM--SSY--EDEAYEIMR-------SLDVDYVLVVFGGVTGYSSDDINKFLW 640 (740)
Q Consensus 576 ~~a~R~tlaDnnt~n~t~Ia~vg~~l--as~--E~~A~~Ilr-------~l~vdYVlv~~gg~~~y~~dDi~Kf~w 640 (740)
+.|+|++-.|||+ +.||+.++..- ..| -..|.+..| .|+++-||++||....-.-+||.|-.-
T Consensus 141 g~a~~~s~~~gnp--q~hi~~lkS~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid 214 (421)
T COG5151 141 GCAKYTSSMDGNP--QAHIGQLKSKRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETID 214 (421)
T ss_pred hHHHHhhhcCCCH--HHHHHHhhcccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHH
Confidence 7899999999999 67998877422 112 244444443 468999999999865544456655443
No 51
>KOG2516 consensus Protein involved in dolichol pathway for N-glycosylation (mannosyltransferase family) [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.21 E-value=2.1e+02 Score=32.45 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004635 397 LFLFPAGLYFCFKKLSDATIFIVMYGLTSMYFAGVMVRLILVATPAVCLISAIAVSATIKN 457 (740)
Q Consensus 397 ~~l~~~Gl~~~~~~~~~~~lfllv~~~~~~y~a~~~vRf~~~lap~vailagi~l~~~~~~ 457 (740)
+.+.|+|+.+ .++.++-.+--+.+..+-.+.-..--||+.|.-|..++.+|++-+.+++.
T Consensus 267 lLlvpig~~~-~~~~~~~vl~sL~fi~lySflpHKElRFIIY~~P~~nl~aA~gca~l~~n 326 (517)
T KOG2516|consen 267 LLLVPIGLVL-IPRLRPLVLVSLFFIFLYSFLPHKELRFIIYAFPWFNLAAAIGCARLWNN 326 (517)
T ss_pred HHHHhhhhhc-ccCccceeHHHHHHHHHHHhCCcceeEEEEeehHHHHHHHHHHHHHHHHh
Confidence 3445777643 34444321111222122222356789999999999999999999988765
No 52
>COG4906 Predicted membrane protein [Function unknown]
Probab=21.59 E-value=1.4e+03 Score=27.00 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=49.8
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHhhhhhhhcccCCCchhHHHHHHHHHHHHHHHHHHh
Q 004635 138 VHIREVCVLTAPFFASNTTVVAYFFGKEI-WDSGAGLVAAAFIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVN 216 (740)
Q Consensus 138 ~~l~~v~~~lppi~~~ltvi~~yll~~~l-~~~~aGl~AA~l~Ai~P~~i~RS~~G~~D~e~l~lf~~~l~~~l~i~al~ 216 (740)
+.+..+..+.=|+.+++.-+++|.+..|+ .++.-|.+|.++.-..-.++. +..+...-- ++-.++.+.++...+-++
T Consensus 256 ~~~vyiFKiiYpfifslvPv~vy~iser~l~n~~~~flsvl~Fif~f~F~~-e~lalaRq~-Iaelflal~~~v~~~~~~ 333 (696)
T COG4906 256 VPEVYIFKIIYPFIFSLVPVPVYLISERILKNSDYGFLSVLLFIFQFSFIY-EILALARQL-IAELFLALAVMVLTGDMR 333 (696)
T ss_pred CchhhHHHHHHhHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence 35666788888999999999999999887 467889999988765555544 233333322 233334444444444443
No 53
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=20.03 E-value=1.6e+03 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhchhHHH
Q 004635 223 ALASAFGYFYMVSAWGGYVFI 243 (740)
Q Consensus 223 ~~lagl~~~l~~~~WgGy~~i 243 (740)
+++.|-..++..+.||||...
T Consensus 221 GI~~G~~WAy~~LgWGgyW~W 241 (628)
T TIGR03145 221 GIMLGSWWAYYELGWGGWWFW 241 (628)
T ss_pred HHHHHHHHHhhhccCCCCCcC
Confidence 444555566666669998744
Done!