Query 004635
Match_columns 740
No_of_seqs 265 out of 637
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:20:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004635.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1933-1937//hhsearch_pdb/004635hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lgz_A Dolichyl-diphosphooligo 1.0 1 1 617.4 0.0 228 510-740 14-244 (273)
2 3rce_A Oligosaccharide transfe 1.0 1 1 569.6 46.4 508 49-651 18-586 (724)
3 3vgp_A Transmembrane oligosacc 1.0 1 1 342.0 6.7 151 541-735 2-163 (164)
4 2zai_A Oligosaccharyl transfer 1.0 1 1 253.4 4.4 113 528-649 2-116 (497)
5 3aag_A General glycosylation p 1.0 1 1 241.2 4.6 118 540-658 8-140 (291)
6 3qr3_A Endoglucanase EG-II; TI 1.0 1 1 12.3 2.2 21 606-626 243-263 (340)
7 1x1i_A Xanthan lyase; alpha/al 1.0 1 1 12.2 -0.7 17 662-678 616-632 (752)
8 2p10_A MLL9387 protein; putati 1.0 1 1 11.9 3.0 52 600-652 168-228 (286)
9 1emz_A Envelope glycoprotein E 1.0 1 1 11.7 2.5 18 222-239 4-21 (26)
10 1cb8_A Protein (chondroitinase 1.0 1 1 11.0 0.3 29 539-570 79-107 (678)
No 1
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3; catalytic domain, oligosaccharyl transferase; NMR {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=617.36 Aligned_cols=228 Identities=51% Similarity=0.941 Sum_probs=221.3
Q ss_pred HHHHHCCHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHEECCCEEEECCCCC
Q ss_conf 98621001412012478861455512689963346369999999883599999168815662111200383010049988
Q 004635 510 LSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTW 589 (740)
Q Consensus 510 l~~f~~~~~~~~~~~ys~Psiv~~~~~~~g~~~i~dDw~eAl~WLr~NTp~da~VmSWWDYGY~It~~a~RttlaDnnt~ 589 (740)
++.|+.||+|+++++||+|+|+++++.++|+|.++|||+|||+|||+|||+|++|||||||||||+++|||+|++|||||
T Consensus 14 ~~~~~~h~~w~~s~ays~Psiv~~~~~~~G~~~i~dDw~eAL~WLr~NTp~da~VmSWWDYGY~It~~A~R~tlaDG~t~ 93 (273)
T 2lgz_A 14 LVPRGSHSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTW 93 (273)
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCCCCCC-CCCEECCC
Q ss_conf 8621324366326798799999985499899998477556684401467999997198899-877888854-77210158
Q 004635 590 NNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFP-VIKEPDYLV-NGDYRVDK 667 (740)
Q Consensus 590 n~t~Ia~vg~~las~E~~A~~Il~~l~vdYVlv~~gg~~~y~~dDi~Kf~wm~rIa~~~~~-~i~~~dy~~-~~~~~v~~ 667 (740)
|++||+.+|++|++||++|++|+|+|++|||+|++||++||++||+|||+||+|||++++| +|+|.||++ +|+|++|.
T Consensus 94 n~t~i~~vg~aftSsE~~A~~Ilr~L~vdYVlv~~gg~~gys~dDi~Kf~wM~rIa~~~~~~~I~e~dy~~~~g~~~v~~ 173 (273)
T 2lgz_A 94 NNTHIAIVGKANASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWNIRISEGIWPEEIKERDFYTAEGEYRVDA 173 (273)
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCEEEEEECCCEEEEEEECCCCCCC
Q ss_conf 99875798775753001235310025899964432320206889-99995115784178489997736999999
Q 004635 668 GAAPKMLNCLMYKLSYYRFGELVTEYGKPPGYDRARGVEIGNKD-IKLEHLEEAFTTSNWIVRIYKVKPPNNRW 740 (740)
Q Consensus 668 ~~~~~m~~sllykl~y~~~~~~~~~~~~~~g~d~~r~~~i~~~~-~~l~~~~e~~ts~~~~vriykv~~~~~~~ 740 (740)
+++|+|+||||||||||||++. +++++|+||||+++||.|+ ++|++||||||||||+|||||||+++|++
T Consensus 174 ~~s~~m~~SlmYKLsy~~f~~~---~~~~~g~Dr~r~~~i~~~~~~~l~~feEvfTS~~wlVRIYkV~~~~~~~ 244 (273)
T 2lgz_A 174 RASETMRNSLLYKMSYKDFPQL---FNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWNVRIYQLKKDDAQG 244 (273)
No 2
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=1.00 E-value=1 Score=569.62 Aligned_cols=508 Identities=16% Similarity=0.171 Sum_probs=352.8
Q ss_pred HHHHHHHHHHHHHHHHHC-C--CC-------CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999986310-1--35-------4667778357999999999961864434566777778873003664452
Q 004635 49 SILGLVYILAFITRLFSV-L--RY-------ESMIHEFDPYFNYRTTLFLTEKGFYEFWNWFDSESWYPLGRIIGGTLYP 118 (740)
Q Consensus 49 ~iL~~i~~laf~iRl~~v-~--~~-------~~~i~~~Dpyy~~r~~~~l~~~G~~~f~~wfD~~~~yP~Gr~vg~t~~P 118 (740)
+.+++++++|+++|+.+. . ++ +..+.++|||||+|.+|.++++++.+ +++| |+| |
T Consensus 18 l~~~~~~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~~~D~yy~~r~ar~~l~~~~~p--~~~~-----p~g--------~ 82 (724)
T 3rce_A 18 ILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQP--NDLS-----YFG--------S 82 (724)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHSSCGGGEETTEECCSCHHHHHHHHHHHHHHHSCCCT--TSCC-----CTT--------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCHHHHHHHHHHHHHCCCCC--CCCC-----CCC--------C
T ss_conf 999999999999997158763367512799887402587999999999998158999--8888-----876--------3
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 48999999999987612324799999986658988899999999997224158999999999804356632568876048
Q 004635 119 GLMVTAAFIYWTLRFLRFAVHIREVCVLTAPFFASNTTVVAYFFGKEIWDSGAGLVAAAFIAICPGYISRSVAGSYDNEG 198 (740)
Q Consensus 119 ~L~~~~a~i~~~l~~~g~~~~l~~v~~~~ppi~~~l~vi~~yll~~~l~~~~aGl~AAll~Ai~P~~i~RS~~G~~D~e~ 198 (740)
.+....+.++++ + +++++++|+++||+||+++++++|+++||++++++|++||+++|++|+|++||++|++|||+
T Consensus 83 ~~~~l~a~l~~i---~--g~sl~~v~~~lp~ifg~L~vi~~yll~~el~~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~ 157 (724)
T 3rce_A 83 SLSTLTYWLYSI---L--PFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDM 157 (724)
T ss_dssp HHHHHHHHHHHS---C--SSCHHHHHHHHHHHHGGGGHHHHHHHHHHTTCHHHHHHHHHHHTTSHHHHHTSSTTCCSGGG
T ss_pred HHHHHHHHHHHH---C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 599999999998---3--99999999989999999999999999999858428999999999989999883466216226
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998204288999999999999-98301147999999999999998822303689999899999999
Q 004635 199 VAIFALLLTFYLFVKAVNTGSLAWALASAFGYFYM-VSAWGGYVFIINLIPLYVLVLLITGRYSMRLYVAYNCMYVLGML 277 (740)
Q Consensus 199 l~if~~~l~~~~~i~al~~~~~~~~~laGi~~~l~-~~~Wggy~~~~~~i~l~~~~~~l~~r~~~~~~~~y~~~~~ig~~ 277 (740)
++++++++++|++++++|+++..|++++|++++++ .++||||.++++++++|++++++++|++.+.+..-.... +
T Consensus 158 l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~ggy~fi~~~i~l~~~~~ll~~r~~~~~~~~~~~~~-~--- 233 (724)
T 3rce_A 158 LVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMI-I--- 233 (724)
T ss_dssp GTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-H---
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-H---
T ss_conf 999999999999999998377899999999999999998350479999999999999997675157788899999-9---
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 87531233430102178899999999999999999999761705899999999999999999999999963056687011
Q 004635 278 LAMQIRFVGFQHVQSGEHMAAMGVFFLMQVFYFLDWVKYMLSDTKLFQAFLRITVTSAIAVGALALGVGTASGYISPWTG 357 (740)
Q Consensus 278 l~~~ip~vGf~~~~s~~~~~a~~vf~ll~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~ig~~~l~~l~~~g~~~p~~~ 357 (740)
+ ++...+ . ..+..++.++.+. ..++..-. +. .. .++ +.++++.+...|.+.+...
T Consensus 234 -a--l~~~~~-------~---~~~~~~~~lf~l~-~~~~~~~~-~~--~~---~i~-----~~~~~~~~~~~gg~~~i~~ 288 (724)
T 3rce_A 234 -A--LSMLAW-------Q---YKLALIVLLFAIF-AFKEEKIN-FY--MI---WAL-----IFISISILHLSGGLDPVLY 288 (724)
T ss_dssp -H--HSCCCH-------H---HHHHHHHHHHHHH-HHSTTCCC-HH--HH---HHH-----HHHHHHHHHHHCC------
T ss_pred -H--HHCCHH-------H---HHHHHHHHHHHHH-HCCCCHHH-HH--HH---HHH-----HHHHHHHHHHHCCHHHHHH
T ss_conf -8--741026-------7---8889999999998-50410112-68--99---999-----9999999999401888999
Q ss_pred HHHHCCCCC--C-----CCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 244201444--4-----445687-52430134898946789986789999---999999876507974368999999999
Q 004635 358 RFYSLLDPT--Y-----AKDNIP-IIASVSEHQPTAWSSFMFDFHILLFL---FPAGLYFCFKKLSDATIFIVMYGLTSM 426 (740)
Q Consensus 358 r~~~ll~~~--~-----a~~~~P-i~~SVsE~qp~~w~~~~~~~~~~~~l---~~~Gl~~~~~~~~~~~lflli~~i~~~ 426 (740)
.+...+... . +..+.| +.+||+|.|+++|.++..+.++...+ ..+|+.++..|.+ ..+++++|.++++
T Consensus 289 ~~~~y~~~~~~~~~~~~~~~~~pnV~~tI~El~~~~~~~~~~~~~g~~~~f~lgl~G~~ll~~r~~-~~ll~Lp~~~lG~ 367 (724)
T 3rce_A 289 QLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHK-SMLLALPMLALGF 367 (724)
T ss_dssp ------------------CCCCCCTTTTBGGGCCCCHHHHHHHHHSSHHHHHHHHHHHHHHHTTTS-SGGGGHHHHHHHH
T ss_pred HHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 877663045433333334676886888899705799999997606719999999999999999999-9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99998999999777899999999999999998865321121112589889899878865655898753204579999999
Q 004635 427 YFAGVMVRLILVATPAVCLISAIAVSATIKNLTSLLRTKSKTAVAGSSKGTGGSKASSKASFDQSQPFQKNGAIALLLGA 506 (740)
Q Consensus 427 y~a~~~vRf~~~lap~vailagi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~l~vv~~i 506 (740)
++...++||.++++|+++++.|++++++.+...+. ++|.. ....++++++++
T Consensus 368 la~~~G~RF~~~~~P~lalg~G~~i~~~~~~~~~~------------------~~~~~----------~~~~~~~~~~l~ 419 (724)
T 3rce_A 368 MALRAGLRFTIYAVPVMALGFGYFLYAFFNFLEKK------------------QIKLS----------LRNKNILLILIA 419 (724)
T ss_dssp HHHHHCGGGGGGGHHHHHHHHHHHHHHHHHHHHHS------------------SCCCC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHH----------HHHHHHHHHHHH
T ss_conf 99985036799999999999999999999999865------------------55443----------567799999999
Q ss_pred HHHHHHHHCCHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHEECCCEEEECC
Q ss_conf 99998621001412012478861455512689963346369999999883599999168815662111200383010049
Q 004635 507 FYLLSKYATHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDN 586 (740)
Q Consensus 507 ~~ll~~f~~~~~~~~~~~ys~Psiv~~~~~~~g~~~i~dDw~eAl~WLr~NTp~da~VmSWWDYGY~It~~a~RttlaDn 586 (740)
++++.....|. ..| ...|.++|||+||+.|||+|||+|++|+|||||||||+++|||+|++||
T Consensus 420 ~~~~~p~~~~~-----~~~------------~~~p~~~~~~~~al~~lk~~t~~~~~v~sWWDyGy~i~~~a~r~t~~DG 482 (724)
T 3rce_A 420 FFSISPALMHI-----YYY------------KSSTVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDG 482 (724)
T ss_dssp HHHHHHHHHHH-----HHC------------CCCCSSCHHHHHHHHHHHTTSCTTCEEECCHHHHHHHHHHHCCEESCCS
T ss_pred HHHHHHHHHHH-----HHC------------CCCCEECHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCEEEEC
T ss_conf 99987888876-----323------------7797445899999999984499988899972566699988478176118
Q ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHHHC-----------------------CC-------------CEEE-EEECC--C
Q ss_conf 98886213243663267987999999854-----------------------99-------------8999-98477--5
Q 004635 587 NTWNNTHIATVGRAMSSYEDEAYEIMRSL-----------------------DV-------------DYVL-VVFGG--V 627 (740)
Q Consensus 587 nt~n~t~Ia~vg~~las~E~~A~~Il~~l-----------------------~v-------------dYVl-v~~gg--~ 627 (740)
++||+++++.+|+++++||++|++|+|.. |. +|.+ ..-.+ +
T Consensus 483 g~~~~~~~y~v~~al~s~~~~a~~i~rl~v~yt~~~~~~~~~~~~~~m~k~yg~~~~~~~l~~l~~~~~~l~p~k~r~iY 562 (724)
T 3rce_A 483 GKHLGKDNFFSSFVLSKEQIPAANMARLSVEYTEKSFKENYPDVLKAMVKDYNQTSAKDFLESLNDKNFKFDTNKTRDVY 562 (724)
T ss_dssp SSCCHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHTTTCSSSHHHHTTSCSSSCCCCSCCCSCEE
T ss_pred CCCCCCCCEEEEHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 86798610453022179879999999999988512334531479999998549776999998722157646789987789
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 566844014679999971988998
Q 004635 628 TGYSSDDINKFLWMVRIGGGVFPV 651 (740)
Q Consensus 628 ~~y~~dDi~Kf~wm~rIa~~~~~~ 651 (740)
.-.+.|+++|++|+.+.|+|++..
T Consensus 563 ~~l~~~Ml~~~~wi~~Fg~wDf~t 586 (724)
T 3rce_A 563 IYMPYRMLRIMPVVAQFANTNPDN 586 (724)
T ss_dssp EEEEGGGGTTHHHHHHHHHBCTTT
T ss_pred EEECHHHHHHHHHHHHHCCCCCCC
T ss_conf 997789986788999742513677
No 3
>3vgp_A Transmembrane oligosaccharyl transferase, putativ; glycosyltransferase, cell membrane; 1.75A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=342.01 Aligned_cols=151 Identities=25% Similarity=0.352 Sum_probs=134.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCCC----------EEEEECCCCCHHHEECCCEEEECCCCCCCCHHHHHHHH-HCCCHHHHH
Q ss_conf 3346369999999883599999----------16881566211120038301004998886213243663-267987999
Q 004635 541 RVIFDDYREAYFWLRQNTPPDA----------KVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRA-MSSYEDEAY 609 (740)
Q Consensus 541 ~~i~dDw~eAl~WLr~NTp~da----------~VmSWWDYGY~It~~a~RttlaDnnt~n~t~Ia~vg~~-las~E~~A~ 609 (740)
|.++|||+|||+|||+|||+|+ +|||||||||||+++|||++++||++ +++..++++ |++||++|+
T Consensus 2 P~i~~dw~eal~Wl~~nTp~~~~~~~~~~p~y~V~sWWDYG~~i~~~a~R~~~ad~~q---~gi~~~A~ffla~~E~~A~ 78 (164)
T 3vgp_A 2 PDLTEDWKEALEWMRTSLEEQNYLNPYEKPEYSVMSWWDYGNWILYVSKKAVVANNFQ---AGAVDAAKFFTAKSEDEAI 78 (164)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCC-CTTSSCSCSEECCCCHHHHTTTCSTTCSSCSSHH---HHHHHHHHHHTCSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHEEEECCEEEECCCC---CCCHHHHHHHHCCCHHHHH
T ss_conf 9665799999999996299865544335777789962257146246317717726875---6627788998669999999
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99985499899998477556684401467999997198899877888854772101589987579877575300123531
Q 004635 610 EIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGDYRVDKGAAPKMLNCLMYKLSYYRFGEL 689 (740)
Q Consensus 610 ~Il~~l~vdYVlv~~gg~~~y~~dDi~Kf~wm~rIa~~~~~~i~~~dy~~~~~~~v~~~~~~~m~~sllykl~y~~~~~~ 689 (740)
+|+|+++||||+|++|+.+| +||++||+||+||++...+ +|+. | +++|+|.|||||||||++.
T Consensus 79 ~il~~l~v~YV~v~~~~~~~--~~d~~Kf~~m~~~a~~~~~-----~y~~-~------~~~~~~~~sml~rL~~~dg--- 141 (164)
T 3vgp_A 79 KIAKKRGVRYVVTADEITMK--DANNTKFPAIMRIAGYNVD-----LMTE-G------EILNFFNHTVLYRLHMENA--- 141 (164)
T ss_dssp HHHHHHTCCEEEECGGGTTS--CTTSCSHHHHHHHTTCCGG-----GSCH-H------HHHHHHHTSHHHHHHTTTT---
T ss_pred HHHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHCCCCH-----HCCC-C------CCCHHHHHHHHHHHHCCCC---
T ss_conf 99998099689999775236--6741138999999768930-----0017-7------7687899999998750489---
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCEEEEEEECC
Q ss_conf 0025899964432320206889999951157841784899977369
Q 004635 690 VTEYGKPPGYDRARGVEIGNKDIKLEHLEEAFTTSNWIVRIYKVKP 735 (740)
Q Consensus 690 ~~~~~~~~g~d~~r~~~i~~~~~~l~~~~e~~ts~~~~vriykv~~ 735 (740)
..|+|||||||| |+|||||||.
T Consensus 142 ----------------------s~l~~frlVy~S--~~vrIykv~~ 163 (164)
T 3vgp_A 142 ----------------------ENLTHFRLVKEF--GDVKIFEVVG 163 (164)
T ss_dssp ----------------------TTCSSEEEEEEE--TTEEEEEETT
T ss_pred ----------------------CCCCCCEEEEEC--CCEEEEEEEC
T ss_conf ----------------------975326278975--9889999816
No 4
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=1.00 E-value=1 Score=253.40 Aligned_cols=113 Identities=26% Similarity=0.484 Sum_probs=101.3
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHH--HEECCCEEEECCCCCCCCHHHHHHHHHCCCH
Q ss_conf 61455512689963346369999999883599999168815662111--2003830100499888621324366326798
Q 004635 528 PSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQI--TAMGNRTVIVDNNTWNNTHIATVGRAMSSYE 605 (740)
Q Consensus 528 Psiv~~~~~~~g~~~i~dDw~eAl~WLr~NTp~da~VmSWWDYGY~I--t~~a~RttlaDnnt~n~t~Ia~vg~~las~E 605 (740)
||++.+.+..++.|.++|||+|||.|||+|||+|++||||||||||| +++|||+|++||++||+ +...+|++|+++|
T Consensus 2 ~~~~~~~~~~~~~pvi~ddw~eAL~WLr~NTPeda~VmSWWDYGY~I~~t~~A~R~tlaDG~t~n~-~~~~vAk~LtSnE 80 (497)
T 2zai_A 2 PLLAQSAKSMRTTEIETSGWEDALKWLRENTPEYSTATSWWDYGYWIESSLLGQRRASADGGHARD-RDHILALFLARDG 80 (497)
T ss_dssp ---------------CCSSHHHHHHHHHHHSCTTCCEEEGGGHHHHHHTTTTC---------CCSH-HHHHHHHHHHCCS
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCC-CCCHHHEECCCCH
T ss_conf 317663665158997787899999999854999987999603861020375137607874985788-7622020011887
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79999998549989999847755668440146799999719889
Q 004635 606 DEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVF 649 (740)
Q Consensus 606 ~~A~~Il~~l~vdYVlv~~gg~~~y~~dDi~Kf~wm~rIa~~~~ 649 (740)
++|+.+++++++|||+++ .||++||+||.|+|+++.
T Consensus 81 ~~A~~iL~~L~vdYViV~--------~dDi~KF~~i~~igg~~~ 116 (497)
T 2zai_A 81 NISEVDFESWELNYFLVY--------LNDWAKFNAISYLGGAIT 116 (497)
T ss_dssp GGGCCCGGGGTCCEEEEE--------GGGGGGHHHHHHHTTSSC
T ss_pred HHHHHHHHHHCCCEEEEE--------HHHHHHHHHHHHHHCCCC
T ss_conf 688999998399699998--------017678799998615665
No 5
>3aag_A General glycosylation pathway protein; multidomain, transferase; HET: MLY; 2.80A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=241.21 Aligned_cols=118 Identities=21% Similarity=0.334 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHEECCCEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCE
Q ss_conf 63346369999999883599999168815662111200383010049988862132436632679879999998549989
Q 004635 540 NRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRAMSSYEDEAYEIMRSLDVDY 619 (740)
Q Consensus 540 ~~~i~dDw~eAl~WLr~NTp~da~VmSWWDYGY~It~~a~RttlaDnnt~n~t~Ia~vg~~las~E~~A~~Il~~l~vdY 619 (740)
.|.+++||.|||.|||+|||+|++|||||||||||+++|+|+|++||+|||++|++.+|++|++||++|++|+| |+++|
T Consensus 8 ~p~~~~~~~~al~~l~~~t~~~~~v~sWWDyGy~i~~~a~r~t~~Dg~~~~~~~~~~v~~~~~s~e~~a~~i~r-l~~~y 86 (291)
T 3aag_A 8 PTVFSQNEASLLNQLXNIANREDYVVTWWDYGYPVRYYSDVXTLVDGGXHLGXDNFFPSFALSXDEQAAANMAR-LSVEY 86 (291)
T ss_dssp ------CHHHHHHHHHHHSCTTCEEECCGGGHHHHHHHHCCEESCBTTBCCHHHHHHHHHHHHSCHHHHHHHHH-HHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHH-HHHHH
T ss_conf 88349899999999985499887799984177314664240477328766774357763001679999999998-65043
Q ss_pred EEEEE---------C----C-CCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCC
Q ss_conf 99984---------7----7-55668440146799999719889-987788885
Q 004635 620 VLVVF---------G----G-VTGYSSDDINKFLWMVRIGGGVF-PVIKEPDYL 658 (740)
Q Consensus 620 Vlv~~---------g----g-~~~y~~dDi~Kf~wm~rIa~~~~-~~i~~~dy~ 658 (740)
+.+.| + + +.+|+.+|++||+||+|+++-.+ |+-...+|+
T Consensus 87 ~~~~f~~~~~~~~~~~~l~~~~~~y~~~~~n~fL~~l~~~~~~~~p~~~~~~Y~ 140 (291)
T 3aag_A 87 TEXSFYAPQNDILXSDILQAMMXDYNQSNVDLFLASLSXPDFXIDTPXTRDIYL 140 (291)
T ss_dssp HHHTTC----CTTSSCHHHHHHHTTTCCCHHHHHHHTTSSCCCCCSCCCSCEEE
T ss_pred CCHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 001101532221113556666513671238999986223333347888888899
No 6
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=1.00 E-value=1 Score=12.33 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=9.9
Q ss_pred HHHHHHHHHCCCCEEEEEECC
Q ss_conf 799999985499899998477
Q 004635 606 DEAYEIMRSLDVDYVLVVFGG 626 (740)
Q Consensus 606 ~~A~~Il~~l~vdYVlv~~gg 626 (740)
+...+-+++.++.=++.=||.
T Consensus 243 ~~~~~~~~~~g~pv~iGEfG~ 263 (340)
T 3qr3_A 243 SPLATWLRQNNRQAILTETGG 263 (340)
T ss_dssp HHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHHHCCCCEEEECCCC
T ss_conf 999999997698489967069
No 7
>1x1i_A Xanthan lyase; alpha/alpha barrel, beta sandwich; HET: 46M; 1.80A {Bacillus SP} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1x1h_A* 1x1j_A* 2e22_A* 1j0m_A 1j0n_A* 2e24_A
Probab=1.00 E-value=1 Score=12.23 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=9.0
Q ss_pred CEECCCCCCHHHHHHHH
Q ss_conf 21015899875798775
Q 004635 662 DYRVDKGAAPKMLNCLM 678 (740)
Q Consensus 662 ~~~v~~~~~~~m~~sll 678 (740)
+|.+-++.++.-..++.
T Consensus 616 ~Y~vlP~~s~~~~~~~a 632 (752)
T 1x1i_A 616 GYVLLPNKTSAQVGAYA 632 (752)
T ss_dssp EEEEEETCCHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHH
T ss_conf 89998189879999775
No 8
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=1.00 E-value=1 Score=11.90 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=36.2
Q ss_pred HHCCCHHHHHHHHHHCCCCEEEEEEC----CCCCC----CCCC-HHHHHHHHHHHCCCCCCC
Q ss_conf 32679879999998549989999847----75566----8440-146799999719889987
Q 004635 600 AMSSYEDEAYEIMRSLDVDYVLVVFG----GVTGY----SSDD-INKFLWMVRIGGGVFPVI 652 (740)
Q Consensus 600 ~las~E~~A~~Il~~l~vdYVlv~~g----g~~~y----~~dD-i~Kf~wm~rIa~~~~~~i 652 (740)
..+-|+++|..+.+ +++|++.+-.| |.+|. |-+| ..+-.-+++-+..++||+
T Consensus 168 ~~v~~~eeA~amA~-agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdv 228 (286)
T 2p10_A 168 PYVFSPEDAVAMAK-AGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDI 228 (286)
T ss_dssp CEECSHHHHHHHHH-HTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCC
T ss_pred EECCCHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96399999999998-09999998899877775567875467776999999999999859995
No 9
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=1.00 E-value=1 Score=11.71 Aligned_cols=18 Identities=33% Similarity=0.975 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHCH
Q ss_conf 999999999999983011
Q 004635 222 WALASAFGYFYMVSAWGG 239 (740)
Q Consensus 222 ~~~laGi~~~l~~~~Wgg 239 (740)
|++++|++|+.|...|.-
T Consensus 4 wGvl~glayfsm~gnWaK 21 (26)
T 1emz_A 4 WGVLAGIAYFSMVGNWAK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 214589999997567865
No 10
>1cb8_A Protein (chondroitinase AC); lyase, chondroitin degradation; HET: MAN RAM GCU MFU; 1.90A {Pedobacter heparinus} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB: 1hm2_A* 1hm3_A* 1hmu_A* 1hmw_A*
Probab=1.00 E-value=1 Score=10.99 Aligned_cols=29 Identities=24% Similarity=0.754 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 96334636999999988359999916881566
Q 004635 539 GNRVIFDDYREAYFWLRQNTPPDAKVMSWWDY 570 (740)
Q Consensus 539 g~~~i~dDw~eAl~WLr~NTp~da~VmSWWDY 570 (740)
+.+.+..+-.+|++|..++.|... .|||+
T Consensus 79 ~~~~l~~~I~~al~~~~~~~~~~~---NWW~~ 107 (678)
T 1cb8_A 79 GDDKVFDQISKAFKYWYDSDPKSR---NWWHN 107 (678)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCCS---SHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCC---CCCHH
T ss_conf 899999999999999985799889---86446
Done!