BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004636
(740 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 95/134 (70%), Positives = 117/134 (87%), Gaps = 1/134 (0%)
Query: 608 TNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPG 667
+NF GLKVLVMDENGVSR VTKGLL+HLGC+V TVSS EEC RVVSHEH+VVFMDVC+PG
Sbjct: 3 SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPG 62
Query: 668 IDGYEVAVHIHDKFTR-RHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSV 726
++ Y++A+ IH+KFT+ RH+RPL+VAL+G+TD TK+ CM G+DGV+LKPVSL+ +R V
Sbjct: 63 VENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122
Query: 727 LSDLLEHRVLFESM 740
LSDLLE RVL+E M
Sbjct: 123 LSDLLEPRVLYEGM 136
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 26/238 (10%)
Query: 346 DFLAVMNHEMRTPMHAIIALSSL----LQETELTPEQRLMVETILKSSNLLATLINDVLD 401
+F+A ++HE+RTP+ AI A + L E +L+ + + E I+ SN L L+N++LD
Sbjct: 22 EFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFL-EVIIDQSNHLENLLNELLD 80
Query: 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLM 461
SRLE SLQ+ +L + +N IK AS + V P A D R+
Sbjct: 81 FSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIR 140
Query: 462 QTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPI--ENHFYLRVQVKDSG 519
Q LLN++ N VK++K+ AP+ + I E + + V+D+G
Sbjct: 141 QVLLNLLNNGVKYSKKD------------------APDKYVKVILDEKDGGVLIIVEDNG 182
Query: 520 SGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGC 577
GI +F +F + + G+GLGLAI K V L G IW+ESE +GKG
Sbjct: 183 IGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGKGS 239
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 26/238 (10%)
Query: 346 DFLAVMNHEMRTPMHAIIALSSL----LQETELTPEQRLMVETILKSSNLLATLINDVLD 401
+F+A ++HE+RTP+ AI A + L E +L+ + + E I+ SN L L+N++LD
Sbjct: 22 EFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFL-EVIIDQSNHLENLLNELLD 80
Query: 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLM 461
SRLE SLQ+ +L + +N IK AS + V P A D R+
Sbjct: 81 FSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIR 140
Query: 462 QTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPI--ENHFYLRVQVKDSG 519
Q LLN++ N VK++K+ AP+ + I E + + V+D+G
Sbjct: 141 QVLLNLLNNGVKYSKKD------------------APDKYVKVILDEKDGGVLIIVEDNG 182
Query: 520 SGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGC 577
GI +F +F + + G+GLGLAI K V L G IW+ESE +GKG
Sbjct: 183 IGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGKGS 239
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 30/235 (12%)
Query: 346 DFLAVMNHEMRTPMHAIIALSSLLQETELTPEQ-RLMVETILKSSNLLATLINDVLDLSR 404
DF+ +++E+RTP+ II S LL+ + E+ R V + ++ LA I+DVLD+++
Sbjct: 42 DFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQ 101
Query: 405 LEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTL 464
++ G + L+I + + A + + +A+ D+ GD KRL QTL
Sbjct: 102 IDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTL 160
Query: 465 LNVVGNAVKFTKEGN-ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGIS 523
++V NA++ T G ++++ A E +R+ V D+G G+
Sbjct: 161 DHLVENALRQTPPGGRVTLSARRALGE--------------------VRLDVSDTGRGVP 200
Query: 524 PQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 578
++F +F R+ G GLGLA+ K V L G + +ESE G G T
Sbjct: 201 FHVQAHIFDRFVG------RDRGGPGLGLALVKALVELHGGWVALESE-PGNGST 248
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Query: 447 PDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDSRAPEFFPVPI 505
PD Y D+ ++ Q L N++ NA+K++ EG +++ + V + E L
Sbjct: 31 PDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEEL------------- 77
Query: 506 ENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGH 565
L + VKD G GI +D+ +F +F + R G+GLGLAI K V G
Sbjct: 78 -----LYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGD 132
Query: 566 IWIESEGLGKGCTAIFIV 583
IW +S GKG T F +
Sbjct: 133 IWADSIE-GKGTTITFTL 149
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 108/231 (46%), Gaps = 33/231 (14%)
Query: 349 AVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETI-LKSSNLLATLINDVLDLSRLED 407
A ++HE+R P+ A L++E L ++R I ++ + +I D L ++
Sbjct: 19 ASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAP 78
Query: 408 GSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNV 467
+ + N+ V+++++P+A++ + + LAP +G+ ++ Q LLNV
Sbjct: 79 ETPE----KLNVKLEIERVIDILRPLANMSCVDIQATLAPF---SVIGEREKFRQCLLNV 131
Query: 468 VGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI 527
+ NA++ G ++ +V+ I+N L +++ D+G G++ + +
Sbjct: 132 MKNAIEAMPNGG-TLQVYVS-----------------IDNGRVL-IRIADTGVGMTKEQL 172
Query: 528 PNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 578
L + + + G+GLG+ + R + M G I IESE + KG T
Sbjct: 173 ERLGEPYFTTKGV-----KGTGLGMMVVYRIIESMNGTIRIESE-IHKGTT 217
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 35/230 (15%)
Query: 349 AVMNHEMRTPMHAIIALSSLLQETELTPEQ-RLMVETILKSSNLLATLINDVLDLSRLED 407
A + HE+R P+ I +++ PE + + I + L T++ ++L+ S+
Sbjct: 137 ARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKERQ 196
Query: 408 GSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAV-GDEKRLMQTLLN 466
L+ FNL+ + REV L + ++K+ + D + V D R+ Q L+N
Sbjct: 197 ---VLEFTEFNLNELIREVYVLFE--EKIRKMNIDFCFETDNEDLRVEADRTRIKQVLIN 251
Query: 467 VVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQ 525
+V NA++ T E G I IT SE + + +RV V +SG I +
Sbjct: 252 LVQNAIEATGENGKIKIT-----SEDM---------------YTKVRVSVWNSGPPIPEE 291
Query: 526 DIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV-NLMEGHIWIESEGLG 574
+F+ F + + G+GLGL+IC++ + + G IW E+ G
Sbjct: 292 LKEKIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTENRENG 335
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 613 LKVLVMDENGVSRSVTKGLL-------LHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCV 665
+K+LV+++N V++ V K +L + L CD + + ++FMDV +
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 61
Query: 666 PGIDGYEVAVHIHDKFTRR---HERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEK 722
P +DG + K RR + P IVALT D+ C+ GM+G + KP+ K
Sbjct: 62 PKVDGL-----LSTKMIRRDLGYTSP-IVALTAFADDSNIKECLESGMNGFLSKPIKRPK 115
Query: 723 MRSVLSDL 730
++++L++
Sbjct: 116 LKTILTEF 123
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 605 HGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSS--VEECFRVVSHEHQVVFMD 662
H +T+ P K+L++++N ++ V K ++ LG M +++ VE + S + +V MD
Sbjct: 3 HMETSKP--KILLVEDNKINIMVAKSMMKQLG-HTMDIANNGVEAITAINSSSYDLVLMD 59
Query: 663 VCVPGIDGYEVAVHIH----------------DKFTRRHE----RPL----IVALTGSTD 698
VC+P +DG + I D T +E RP I+A+T +T
Sbjct: 60 VCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTL 119
Query: 699 NLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731
+ + C GMD I KPV+L+K+R L L
Sbjct: 120 AESSEECYANGMDSFISKPVTLQKLRECLQQYL 152
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 613 LKVLVMDENGVSRSVTKGLL-------LHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCV 665
+K+LV+++N V++ V K +L + L CD + + ++FMDV +
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 62
Query: 666 PGIDGYEVAVHIHDKFTRR---HERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEK 722
P +DG + K RR + P IVALT D+ C+ GM+G + KP+ K
Sbjct: 63 PKVDGL-----LSTKMIRRDLGYTSP-IVALTAFADDSNIKECLESGMNGFLSKPIKRPK 116
Query: 723 MRSVLSDL 730
++++L++
Sbjct: 117 LKTILTEF 124
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 31/162 (19%)
Query: 412 LQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAV-GDEKRLMQTLLNVVGN 470
++ FNL+ + REV L + ++K+ + D + V D R+ Q L+N+V N
Sbjct: 1 MEFTEFNLNELIREVYVLFE--EKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQN 58
Query: 471 AVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN 529
A++ T E G I IT SE + + +RV V +SG I +
Sbjct: 59 AIEATGENGKIKIT-----SEDM---------------YTKVRVSVWNSGPPIPEELKEK 98
Query: 530 LFTKFAQNQAIALRNSSGSGLGLAICKRFV-NLMEGHIWIES 570
+F+ F + + G+GLGL+IC++ + + G IW E+
Sbjct: 99 IFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTEN 134
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGY 671
+ +LV+D++ ++R + L LG T + + V+S H +V DV +P +DGY
Sbjct: 9 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGY 68
Query: 672 EVAVHIHDKFTRRHERPLIVALTGSTDNL---TKDNCMRVGMDGVILKPVSLEKMRSVLS 728
+ R + L + + G T N K C+ GMD + KPV+L+ ++ L+
Sbjct: 69 RLT-------QRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLT 121
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGYEV 673
+LV+D++ ++R + L LG T + + V+S H +V DV +P +DGY +
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 191
Query: 674 AVHIHDKFTRRHERPLIVALTGSTDNL---TKDNCMRVGMDGVILKPVSLEKMRSVLS 728
I + L + + G T N K C+ GMD + KPV+L+ ++ L+
Sbjct: 192 TQRIR-------QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLT 242
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 28/146 (19%)
Query: 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEEC------FRVVSH-----EHQ--- 657
G +VLV+D+N +SR V G L +G VS VE+C R+V+ E Q
Sbjct: 61 GKRVLVVDDNFISRKVATGKLKKMG-----VSEVEQCDSGKEALRLVTEGLTQREEQGSV 115
Query: 658 ------VVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTK-DNCMRVGM 710
+FMD +P +DGYE I R I+A++G + ++ GM
Sbjct: 116 DKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGM 175
Query: 711 DGVILKPVSLEKMRSVLSDLLEHRVL 736
D + K SL ++ +V+ ++ R L
Sbjct: 176 DAFLDK--SLNQLANVIREIESKRHL 199
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGY 671
+ VLV++++ V R + + L G V + +E ++++S +H VV + + +P ++G
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLXLLLPDVNGL 60
Query: 672 EVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731
E+ I + R ++ +TG T M++G + KP LE++ ++ +
Sbjct: 61 EILKWIKE----RSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116
Query: 732 EHRVL 736
EHR L
Sbjct: 117 EHRKL 121
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 514 QVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEG 564
QV+D G GI+P+ +LF F + + R SG+GLGLAI +R V+ G
Sbjct: 81 QVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLAIVQRIVDNHNG 129
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 416 TFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKF- 474
T ++H V V+ L+ + + + + P LPE A D ++ Q LLN+V NA++
Sbjct: 7 TESIHKVAERVVTLVS-MELPDNVRLIRDYDPSLPELA-HDPDQIEQVLLNIVRNALQAL 64
Query: 475 -TKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTK 533
+ G I + A +L R R+ V+D+G GI P LF
Sbjct: 65 GPEGGEIILRTRTAFQLTLHGERY----------RLAARIDVEDNGPGIPPHLQDTLFYP 114
Query: 534 FAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIES 570
+ G+GLGL+I + ++ G I S
Sbjct: 115 MVSGR------EGGTGLGLSIARNLIDQHSGKIEFTS 145
>pdb|3JZ3|A Chain A, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
pdb|3JZ3|B Chain B, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
Length = 222
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 28/216 (12%)
Query: 347 FLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLAT-LINDVLDLSRL 405
F + HE+R+P+ A+ + + Q ++ P+ R L S AT L++ +L LSRL
Sbjct: 5 FTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRL 64
Query: 406 EDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLL 465
+ + L + + + I A K+ V L L + G L +
Sbjct: 65 DSLDNLQDVAEIPLEDLLQSSVXDIYHTAQQAKIDVRLTLNAHSIK-RTGQPLLLSLLVR 123
Query: 466 NVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQ 525
N++ NAV+++ +G++ A ++F +R D+G G++P+
Sbjct: 124 NLLDNAVRYSPQGSVVDVTLNA-------------------DNFIVR----DNGPGVTPE 160
Query: 526 DIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL 561
+ + +F + + ++GSGLGL+I +R L
Sbjct: 161 ALARIGERFYRPPG---QTATGSGLGLSIVQRIAKL 193
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGY 671
L VL+ ++N + R V L D+ V++ + + + V+ MD+ +P +DG
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGL 70
Query: 672 EVAVHIHDKFTRRH--ERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVL 727
E I + + R H +R I+A+T T D+ +D + KP++ ++R V+
Sbjct: 71 EAVSEIRN-YERTHNTKRASIIAITADT---IDDDRPGAELDEYVSKPLNPNQLRDVV 124
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGYE 672
K+LV+D+ ++ + L G DV+T S EE + E ++ +DV +P +DG E
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 64
Query: 673 VAVHIHDKFTRRHERPL--IVALTGSTDNLTKDNCMRVGMDGVILKPVS 719
V + R ++ + I+ LT + K + +G D + KP S
Sbjct: 65 VCKQL------RQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFS 107
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHE-HQVVFMDVCVPGIDGY 671
+++LV D++ +R V + LL G V+ V+ E+ ++ E + V +D+ +PG++G
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGL 74
Query: 672 EVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730
++ + +V L+ C + G + KPV K+ L+DL
Sbjct: 75 DMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADL 133
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVS-SVEECFRVVSHE-HQVVFMDVCVPGIDG 670
+KVL++D+ SR + L LG +T + E+ ++++ H +V D +P +DG
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDG 66
Query: 671 YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVL 727
+ + + ++ + LT D +G + V+ KP ++EKM++ +
Sbjct: 67 LGLLQAV--RANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAI 121
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEV 673
+L++++ V+R+ K + G DV + E +++S ++ +V MD+ +PG +G +
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65
Query: 674 AVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKM----RSVLSD 729
A + R ++ LTG + + K + +G D I KP + ++ R++LS
Sbjct: 66 AREL-----REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
Query: 730 LLE 732
++
Sbjct: 121 TMQ 123
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGYE 672
K+L++D+ + K + G +V+T + E E ++ +D+ +P IDG E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731
VA K R+ I+ L+ K + +G D + KP S ++++ + LL
Sbjct: 63 VA-----KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALL 116
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 612 GLKVLVMDENGVSRSVTKGLLLHLGCD-VMTVSSVEECFRVVSHEHQVVFMDVCVPGIDG 670
G ++L++++ V RS+ LG V+ V+ + ++ D+ +P ++G
Sbjct: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66
Query: 671 YEVAVHIHDKFTRRHERPLIVALTGSTDNLTK-DNCMRVGMDGVILKPV-SLEKMRSVL 727
++ HI + R + P++V +T+N+ +R+G++ V+LKPV L ++R ++
Sbjct: 67 LKLLEHIRN---RGDQTPVLV--ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120
>pdb|3F6C|A Chain A, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
pdb|3F6C|B Chain B, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
Length = 134
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTV-----SSVEECFRVVSHEHQVVFMDVCVPG 667
L +++D++ ++ + + LL+ +++ S+V+ RV + + +V +DV +PG
Sbjct: 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQ---RVETLKPDIVIIDVDIPG 58
Query: 668 IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVL 727
++G +V + +R +I+ ++ D+ +C G +G + K E M +++
Sbjct: 59 VNGIQVL----ETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKK---EGMNNII 111
Query: 728 S 728
+
Sbjct: 112 A 112
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGY 671
+ VLV++++ V R + + L G V + +E ++++S +H VV +D+ +P ++G
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGL 60
Query: 672 EVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731
E+ I + R ++ +TG T M++G + KP LE++ ++ +
Sbjct: 61 EILKWIKE----RSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116
Query: 732 EHRVL 736
EHR L
Sbjct: 117 EHRKL 121
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 657 QVVFMDVCVPGIDGYEVAVHIHDKFTRRH-ERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715
++ +DV +PG+DG+ V + D T RH LI AL G D + + G +
Sbjct: 47 DIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRI---QGLESGASDFLT 103
Query: 716 KPVS 719
KP+
Sbjct: 104 KPID 107
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGYE 672
K+L++D+ + K + G +V+T + E E ++ + + +P IDG E
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILXLMLPEIDGLE 62
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731
VA K R+ I+ L+ K + +G D + KP S ++++ + LL
Sbjct: 63 VA-----KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALL 116
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 657 QVVFMDVCVPGIDGYEVAVHIHDKFTRRH-ERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715
++ +DV +PG+DG+ V + D T RH LI AL G D + + G +
Sbjct: 48 DIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRI---QGLESGASDFLT 104
Query: 716 KPVS 719
KP+
Sbjct: 105 KPID 108
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 30/159 (18%)
Query: 419 LHAVFREVLNLIKPIASV---KKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT 475
LH V + NLI + V K + ++++++P++ VG++ ++ + NV+ NA K+
Sbjct: 8 LHPVAPLLDNLISALNKVYQRKGVNISMDISPEIS--FVGEQNDFVEVMGNVLDNACKYC 65
Query: 476 KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFA 535
E FV S D +L + V+D G GI P +L
Sbjct: 66 LE-------FVEISARQTDD--------------HLHIFVEDDGPGI-PHSKRSLVFDRG 103
Query: 536 QNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574
Q +A LR G G+GLA+ + G I LG
Sbjct: 104 Q-RADTLR--PGQGVGLAVAREITEQYAGQIIASDSLLG 139
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 657 QVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRV---GMDGV 713
VV +D+ + G+DG+ + I K T +++A+TG+ LT DN R+ G +
Sbjct: 56 DVVMLDLMMVGMDGFSICHRI--KSTPATANIIVIAMTGA---LTDDNVSRIVALGAETC 110
Query: 714 ILKPVSLEKMRSVLSDLLEHR 734
KP++ + + L+E +
Sbjct: 111 FGKPLNFTLLEKTIKQLVEQK 131
>pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 530
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 512 RVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSG-SGLGLAICKRFVNLMEGHIWIES 570
+V V D+G GI PQ++PN F + + R + G GLG+ + + + IE
Sbjct: 71 KVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKP-IEI 129
Query: 571 EGLGKGCTAIFIVKLGIPEHSND 593
E I+ KL I + N+
Sbjct: 130 ETSPVNSKRIYTFKLKIDINKNE 152
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSH-EHQVVFMDVCVPGIDGYE 672
K+LV+D+ + + L G +V E +V + ++ +D+ +P DG E
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732
V + K+ + P+I+ LT + K + +G D + KP S ++ + + L
Sbjct: 64 VCREVRKKY----DMPIIM-LTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118
Query: 733 HRVLFE 738
++ E
Sbjct: 119 RQLTLE 124
>pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
Length = 469
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 512 RVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSG-SGLGLAICKRFVNLMEGHIWIES 570
+V V D+G GI PQ++PN F + + R + G GLG+ + + + IE
Sbjct: 70 KVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKP-IEI 128
Query: 571 EGLGKGCTAIFIVKLGIPEHSND 593
E I+ KL I + N+
Sbjct: 129 ETSPVNSKRIYTFKLKIDINKNE 151
>pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
Length = 471
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 512 RVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSG-SGLGLAICKRFVNLMEGHIWIES 570
+V V D+G GI PQ++PN F + + R + G GLG+ + + + IE
Sbjct: 72 KVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKP-IEI 130
Query: 571 EGLGKGCTAIFIVKLGIPEHSND 593
E I+ KL I + N+
Sbjct: 131 ETSPVNSKRIYTFKLKIDINKNE 153
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSH-EHQVVFMDVCVPGIDGYE 672
K+LV+D+ + + L G +V E +V + ++ +D+ +P DG E
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKM 723
V + K+ + P+I+ LT + K + +G D + KP S ++
Sbjct: 64 VCREVRKKY----DMPIIM-LTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
Length = 472
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 512 RVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGS-GLGL 552
+V V D+G GI PQ++PN F + + R + G GLG+
Sbjct: 73 KVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGXYGLGV 114
>pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
Length = 469
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 512 RVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGS-GLGL 552
+V V D+G GI PQ++PN F + + R + G GLG+
Sbjct: 70 KVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGXYGLGV 111
>pdb|1YS3|A Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|B Chain B, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|C Chain C, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|A Chain A, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|B Chain B, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|C Chain C, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
Length = 150
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 511 LRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIES 570
+ + + D+GSG+ + +F +F++ + SGSGLGLA+ + L G +E+
Sbjct: 78 VEIAIDDNGSGVPEGERQVVFERFSRGSTAS---HSGSGLGLALVAQQAQLHGGTASLEN 134
Query: 571 EGLG 574
LG
Sbjct: 135 SPLG 138
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFR-VVSHEHQVVFMDVCVPGIDGYE 672
++LV+D+ R + K L G ++ T + EE + S + +V +D+ +PGI G E
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLE 62
Query: 673 VAVHIHDK 680
VA I K
Sbjct: 63 VAGEIRKK 70
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSH-EHQVVFMDVCVPGIDGYE 672
KVL++D++ V R + L G +V+ + + +S ++ +D+ +P +DG+
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGFT 63
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVS 719
V + +K +R ++ LT + + +G V+ KP S
Sbjct: 64 VLKKLQEK--EEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFS 108
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 419 LHAVFREVLNLIKPIASV---KKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT 475
LH V + NL + V K + ++L+++P++ VG++ ++ + NV+ NA K+
Sbjct: 3 LHPVAPLLDNLTSALNKVYQRKGVNISLDISPEIS--FVGEQNDFVEVMGNVLDNACKYC 60
Query: 476 KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFA 535
E FV S D H Y + V+D G GI +F +
Sbjct: 61 LE-------FVEISARQTDE------------HLY--IVVEDDGPGIPLSKREVIFDR-- 97
Query: 536 QNQAIALRNSSGSGLGLAICKRFVNLMEGHI 566
+ LR G G+GLA+ + EG I
Sbjct: 98 GQRVDTLR--PGQGVGLAVAREITEQYEGKI 126
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFR-VVSHEHQVVFMDVCVPGIDGYE 672
++LV+D+ R + K L G ++ T + EE + S + +V +D+ PGI G E
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEXPGISGLE 62
Query: 673 VAVHIHDK 680
VA I K
Sbjct: 63 VAGEIRKK 70
>pdb|2Q2E|B Chain B, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 621
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 510 YLRVQVKDSGSGISPQDIPNLFTKFAQNQAI-ALRNSSG-SGLGLAICKRFVNLMEG 564
Y+ V ++D+G GI + IP +F K AL+ S G G+G++ + + G
Sbjct: 73 YVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAG 129
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS---HEHQVVFMDVCVPGIDG 670
K+LV+D+ K LL G +V+T SS E R+ + + VV D+ +P + G
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 671 YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730
++ I K H +I+ G DN M+ G + KPV+ + + +++
Sbjct: 65 MDILREI--KKITPHMAVIILTGHGDLDNAIL--AMKEGAFEYLRKPVTAQDLSIAINNA 120
Query: 731 LEHRVLF 737
+ + L
Sbjct: 121 INRKKLL 127
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 602 MPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHL--GCDVMTVSSVEECFRVVSHEHQVV 659
+PV+ N GL +L M+ TK LL+ L GC + + + CF++ S E+++
Sbjct: 242 IPVYVGVNIKGLHLLNME--------TKALLISLKYGCFMWQLGDTDTCFQIHSMENKMS 293
Query: 660 FM 661
F+
Sbjct: 294 FI 295
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 602 MPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHL--GCDVMTVSSVEECFRVVSHEHQVV 659
+PV+ N GL +L M+ TK LL+ L GC + + + CF++ S E+++
Sbjct: 242 IPVYVGVNIKGLHLLNME--------TKALLISLKYGCFMWQLGDTDTCFQIHSMENKMS 293
Query: 660 FM 661
F+
Sbjct: 294 FI 295
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 658 VVFMDVCVPGIDGYEVAVHI-HDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILK 716
V+ +D+ +PG DG EV I D+ ++ +V +T S++ + C + I+K
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIP---VVIMTTSSNPKDIEICYSYSISSYIVK 121
Query: 717 PVSLEKMRSVLSDLLEH 733
P+ ++++ + +++
Sbjct: 122 PLEIDRLTETVQTFIKY 138
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFR-VVSHEHQVVFMDVCVPGIDGYEV 673
+L++D++ + +L G +V +S EE + + + + DV +PGIDGY +
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTL 66
Query: 674 AVHIHDKFTRRHERPL-----IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLS 728
K R+H PL I+ LT D K G + + KP +++ +
Sbjct: 67 C-----KRVRQH--PLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVK 119
Query: 729 DLL 731
++L
Sbjct: 120 NIL 122
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECF-RVVSHEHQVVFMDVCVPGIDGYE- 672
+LV D+ + +V +GL H D + + + V + V+ D+ +PG+DG
Sbjct: 20 LLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTL 79
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILK-PVSLE 721
V + + TR + P+IV L+ D L K G + ++K P ++E
Sbjct: 80 VREYRSNPLTR--DIPIIV-LSTKEDPLIKSAAFAAGANDYLVKLPDNIE 126
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 606 GQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECF-RVVSHEHQVVFMDVC 664
G+ P +VLV+D+ + L G +V T ++ + R V +DV
Sbjct: 17 GENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX 76
Query: 665 VPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKM 723
PG DG+ V + + P + LT K + +G D + KP SLE++
Sbjct: 77 XPGXDGFGVLRRLRADGI---DAPALF-LTARDSLQDKIAGLTLGGDDYVTKPFSLEEV 131
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQ-VVFMDVCVPGIDGYEV 673
V ++D++ R K +L G +++ S +C ++ VV +D+ PG DG++
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIXXPGXDGWDT 69
Query: 674 AVHIHD 679
I D
Sbjct: 70 IRAILD 75
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSH-EHQVVFMDVCVPGIDGYE 672
++LV+D++ + +L G D + + V +V +D+ +PG++G +
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKP 717
V + R IV LT TD + + G D I+KP
Sbjct: 67 VC-----RVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKP 106
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEH-QVVFMDVCVPGIDGYE 672
K+L++D+ R + + G ++ + +V+ E +V +D+ +PG+DG E
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64
Query: 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731
+A + K + R +I+ G D + + +G KP ++++R + L
Sbjct: 65 IAKRM--KVIDENIRVIIMTAYGELDMIQESK--ELGALTHFAKPFDIDEIRDAVKKYL 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,272,197
Number of Sequences: 62578
Number of extensions: 746153
Number of successful extensions: 1615
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 73
length of query: 740
length of database: 14,973,337
effective HSP length: 106
effective length of query: 634
effective length of database: 8,340,069
effective search space: 5287603746
effective search space used: 5287603746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)