Query 004636
Match_columns 740
No_of_seqs 665 out of 4099
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11091 aerobic respiration c 100.0 6.3E-57 1.4E-61 542.2 57.4 368 337-733 276-645 (779)
2 COG2205 KdpD Osmosensitive K+ 100.0 3.6E-57 7.9E-62 502.0 45.9 471 24-588 397-882 (890)
3 PRK10841 hybrid sensory kinase 100.0 1.3E-55 2.9E-60 532.8 51.3 382 327-733 430-919 (924)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 5.2E-54 1.1E-58 529.4 54.2 373 330-733 450-823 (968)
5 PRK11107 hybrid sensory histid 100.0 2.6E-53 5.6E-58 520.5 56.0 395 322-734 271-788 (919)
6 PRK15347 two component system 100.0 1.3E-53 2.9E-58 523.2 52.0 385 323-732 377-811 (921)
7 PRK11466 hybrid sensory histid 100.0 8.3E-53 1.8E-57 515.5 51.0 376 321-733 421-800 (914)
8 PRK13837 two-component VirA-li 100.0 8.1E-50 1.8E-54 481.5 66.8 570 88-734 238-815 (828)
9 KOG0519 Sensory transduction h 100.0 5.1E-55 1.1E-59 514.1 12.4 728 2-732 30-785 (786)
10 PRK09959 hybrid sensory histid 100.0 2.7E-49 5.8E-54 497.0 49.8 376 330-732 698-1075(1197)
11 PRK10618 phosphotransfer inter 100.0 1.1E-46 2.4E-51 448.9 38.3 307 325-665 431-737 (894)
12 PRK10490 sensor protein KdpD; 100.0 1.7E-42 3.7E-47 417.1 51.5 473 23-588 399-885 (895)
13 COG5002 VicK Signal transducti 100.0 1.3E-42 2.9E-47 350.4 18.5 228 340-588 221-451 (459)
14 PRK13557 histidine kinase; Pro 100.0 2.3E-38 4.9E-43 365.0 45.7 367 342-734 161-536 (540)
15 PRK09303 adaptive-response sen 100.0 1.7E-36 3.7E-41 334.3 32.4 235 329-586 136-378 (380)
16 COG4251 Bacteriophytochrome (l 100.0 1.1E-33 2.5E-38 305.3 34.7 261 285-589 481-745 (750)
17 TIGR02916 PEP_his_kin putative 100.0 4.9E-32 1.1E-36 320.6 51.1 388 124-584 283-679 (679)
18 PRK11006 phoR phosphate regulo 100.0 7.7E-33 1.7E-37 310.7 27.9 220 343-586 203-424 (430)
19 PRK10604 sensor protein RstB; 100.0 6.8E-32 1.5E-36 303.1 29.6 236 322-587 190-425 (433)
20 COG3852 NtrB Signal transducti 100.0 4.2E-32 9E-37 271.4 24.0 222 342-587 130-356 (363)
21 TIGR02938 nifL_nitrog nitrogen 100.0 6.8E-31 1.5E-35 298.7 29.2 216 342-585 274-494 (494)
22 PRK10815 sensor protein PhoQ; 100.0 1.5E-30 3.3E-35 295.3 31.5 235 322-586 244-479 (485)
23 COG4191 Signal transduction hi 100.0 2.9E-30 6.4E-35 280.2 29.8 213 343-585 383-601 (603)
24 PRK10549 signal transduction h 100.0 7.6E-30 1.7E-34 289.2 29.9 244 321-588 217-461 (466)
25 TIGR03785 marine_sort_HK prote 100.0 1.5E-29 3.2E-34 298.5 30.7 242 320-584 461-703 (703)
26 PRK10755 sensor protein BasS/P 100.0 1.9E-29 4.1E-34 276.0 28.8 215 342-586 135-351 (356)
27 PRK10364 sensor protein ZraS; 100.0 1.3E-28 2.8E-33 278.8 35.7 213 342-586 235-449 (457)
28 PRK09835 sensor kinase CusS; P 100.0 1.1E-28 2.3E-33 281.0 31.6 240 321-585 239-480 (482)
29 TIGR01386 cztS_silS_copS heavy 100.0 1.5E-28 3.2E-33 277.5 29.1 238 321-584 218-457 (457)
30 PRK10337 sensor protein QseC; 100.0 2.4E-28 5.3E-33 275.7 29.7 233 321-582 214-448 (449)
31 PRK09470 cpxA two-component se 100.0 4.9E-28 1.1E-32 273.9 30.8 240 320-586 219-458 (461)
32 TIGR02966 phoR_proteo phosphat 100.0 2.9E-28 6.3E-33 262.5 26.3 218 343-583 113-333 (333)
33 PRK09467 envZ osmolarity senso 100.0 7.6E-28 1.7E-32 270.5 28.3 229 321-586 206-434 (435)
34 PRK11073 glnL nitrogen regulat 100.0 9.7E-28 2.1E-32 261.5 27.2 218 342-585 128-347 (348)
35 PRK11100 sensory histidine kin 100.0 6.6E-27 1.4E-31 265.3 30.2 240 321-586 234-474 (475)
36 COG0642 BaeS Signal transducti 99.9 2.4E-25 5.3E-30 237.8 29.3 218 343-588 114-332 (336)
37 PRK11360 sensory histidine kin 99.9 2.1E-25 4.5E-30 260.0 29.0 213 343-586 389-602 (607)
38 COG5000 NtrY Signal transducti 99.9 4.5E-24 9.6E-29 231.0 31.8 211 344-585 486-708 (712)
39 PRK13560 hypothetical protein; 99.9 7.8E-25 1.7E-29 264.8 25.7 209 331-586 592-804 (807)
40 PRK11644 sensory histidine kin 99.9 7.9E-23 1.7E-27 232.4 31.7 194 342-585 300-494 (495)
41 PRK11086 sensory histidine kin 99.9 8.8E-23 1.9E-27 235.8 22.9 196 343-587 338-537 (542)
42 COG4192 Signal transduction hi 99.9 6.9E-22 1.5E-26 206.4 25.5 211 345-584 452-665 (673)
43 PRK10600 nitrate/nitrite senso 99.9 5.5E-19 1.2E-23 205.5 52.5 345 133-586 209-557 (569)
44 PRK15053 dpiB sensor histidine 99.9 1.2E-21 2.5E-26 226.9 26.0 196 346-587 340-541 (545)
45 COG0745 OmpR Response regulato 99.9 5E-21 1.1E-25 194.5 16.8 117 614-734 2-119 (229)
46 PRK10935 nitrate/nitrite senso 99.8 2.6E-16 5.7E-21 183.0 48.7 190 349-586 365-560 (565)
47 PRK13559 hypothetical protein; 99.8 3.5E-19 7.6E-24 195.2 21.9 186 344-586 170-360 (361)
48 PF02518 HATPase_c: Histidine 99.8 2.1E-19 4.5E-24 162.5 11.1 109 455-585 1-110 (111)
49 COG3290 CitA Signal transducti 99.8 4.5E-17 9.8E-22 177.1 23.7 194 346-587 335-533 (537)
50 COG2204 AtoC Response regulato 99.7 1.1E-17 2.4E-22 182.6 15.4 119 613-735 5-124 (464)
51 COG4753 Response regulator con 99.7 1E-17 2.2E-22 182.2 13.7 116 613-732 2-121 (475)
52 COG3437 Response regulator con 99.7 2.1E-17 4.6E-22 171.1 12.5 123 611-734 13-136 (360)
53 COG4566 TtrR Response regulato 99.7 4.2E-17 9.2E-22 153.9 12.7 116 614-733 6-122 (202)
54 PF00072 Response_reg: Respons 99.7 1E-16 2.3E-21 144.4 14.5 110 615-728 1-112 (112)
55 COG4565 CitB Response regulato 99.7 8.6E-17 1.9E-21 154.9 12.7 121 613-737 1-124 (224)
56 COG2197 CitB Response regulato 99.7 3.7E-16 8E-21 157.5 16.2 121 614-738 2-125 (211)
57 COG0784 CheY FOG: CheY-like re 99.7 1.5E-15 3.3E-20 140.6 15.6 119 611-733 4-126 (130)
58 PRK10547 chemotaxis protein Ch 99.7 3.8E-15 8.1E-20 171.9 20.0 147 417-588 343-526 (670)
59 COG3706 PleD Response regulato 99.6 6E-15 1.3E-19 160.0 15.0 122 612-735 132-254 (435)
60 KOG0519 Sensory transduction h 99.6 2.2E-16 4.7E-21 187.2 2.4 248 339-589 214-492 (786)
61 PRK10046 dpiA two-component re 99.6 2.2E-14 4.8E-19 146.6 15.7 118 613-734 5-125 (225)
62 PLN03029 type-a response regul 99.6 2.1E-14 4.6E-19 146.3 15.1 119 611-731 7-146 (222)
63 COG3850 NarQ Signal transducti 99.6 1.3E-10 2.9E-15 126.0 41.2 325 132-584 234-567 (574)
64 PRK10816 DNA-binding transcrip 99.5 1.4E-13 3.1E-18 139.8 16.6 116 614-733 2-118 (223)
65 PRK11173 two-component respons 99.5 1.7E-13 3.7E-18 140.9 16.8 116 613-733 4-120 (237)
66 PRK10529 DNA-binding transcrip 99.5 1.7E-13 3.8E-18 139.3 16.6 116 613-733 2-118 (225)
67 PRK04184 DNA topoisomerase VI 99.5 1.2E-13 2.6E-18 154.1 16.0 115 455-587 32-154 (535)
68 PRK10955 DNA-binding transcrip 99.5 2.2E-13 4.9E-18 139.0 16.6 116 614-734 3-118 (232)
69 PRK09836 DNA-binding transcrip 99.5 2.4E-13 5.2E-18 138.6 16.7 116 614-733 2-118 (227)
70 COG3947 Response regulator con 99.5 2.9E-14 6.2E-19 142.6 9.4 114 614-733 2-116 (361)
71 PRK10430 DNA-binding transcrip 99.5 2.1E-13 4.6E-18 140.7 15.3 114 613-730 2-120 (239)
72 PRK10766 DNA-binding transcrip 99.5 3.6E-13 7.8E-18 136.6 16.3 116 613-733 3-119 (221)
73 PRK10643 DNA-binding transcrip 99.5 4.4E-13 9.5E-18 135.6 16.7 117 613-733 1-118 (222)
74 PRK09468 ompR osmolarity respo 99.5 4.7E-13 1E-17 137.6 16.9 117 613-733 6-123 (239)
75 PRK10161 transcriptional regul 99.5 5.3E-13 1.2E-17 136.2 16.6 119 613-733 3-122 (229)
76 PRK10336 DNA-binding transcrip 99.5 6.4E-13 1.4E-17 134.2 16.7 117 613-733 1-118 (219)
77 PRK10840 transcriptional regul 99.5 5.6E-13 1.2E-17 135.3 16.2 122 612-737 3-130 (216)
78 COG4567 Response regulator con 99.5 3.4E-13 7.4E-18 122.2 12.5 113 614-730 11-124 (182)
79 TIGR02154 PhoB phosphate regul 99.5 6.3E-13 1.4E-17 134.7 16.2 119 613-733 3-122 (226)
80 PRK13856 two-component respons 99.5 6.3E-13 1.4E-17 137.1 16.2 115 614-733 3-119 (241)
81 PRK10701 DNA-binding transcrip 99.5 7.1E-13 1.5E-17 136.4 16.4 115 614-733 3-118 (240)
82 TIGR02875 spore_0_A sporulatio 99.5 9.7E-13 2.1E-17 137.7 16.8 119 613-733 3-124 (262)
83 PRK11517 transcriptional regul 99.5 1.3E-12 2.9E-17 132.3 17.1 117 613-734 1-118 (223)
84 TIGR03787 marine_sort_RR prote 99.5 1.2E-12 2.6E-17 133.3 16.5 117 614-734 2-121 (227)
85 PRK09958 DNA-binding transcrip 99.5 1.9E-12 4.1E-17 129.5 16.8 119 613-735 1-121 (204)
86 PRK11083 DNA-binding response 99.5 1.7E-12 3.6E-17 131.9 16.4 118 613-734 4-122 (228)
87 TIGR01387 cztR_silR_copR heavy 99.4 2.3E-12 5.1E-17 129.9 16.7 116 615-734 1-117 (218)
88 smart00387 HATPase_c Histidine 99.4 1.7E-12 3.6E-17 115.3 13.1 109 455-585 1-110 (111)
89 PRK14084 two-component respons 99.4 2.5E-12 5.5E-17 133.1 16.0 115 613-733 1-118 (246)
90 CHL00148 orf27 Ycf27; Reviewed 99.4 3.1E-12 6.7E-17 131.2 16.4 118 612-734 6-124 (240)
91 PRK09483 response regulator; P 99.4 3.7E-12 8E-17 128.6 16.7 120 613-736 2-124 (217)
92 PRK14868 DNA topoisomerase VI 99.4 1.4E-12 3E-17 148.1 13.5 130 436-586 22-160 (795)
93 PRK10100 DNA-binding transcrip 99.4 3.8E-12 8.3E-17 128.7 14.5 117 613-737 11-131 (216)
94 PRK15115 response regulator Gl 99.4 2.8E-12 6.1E-17 144.8 15.1 117 613-733 6-123 (444)
95 PRK10923 glnG nitrogen regulat 99.4 4.2E-12 9.1E-17 144.4 16.5 117 613-733 4-121 (469)
96 PRK11361 acetoacetate metaboli 99.4 4.3E-12 9.4E-17 143.8 16.1 118 613-734 5-123 (457)
97 PRK09935 transcriptional regul 99.4 9.6E-12 2.1E-16 124.6 16.6 119 613-735 4-125 (210)
98 PRK10360 DNA-binding transcrip 99.4 8.5E-12 1.8E-16 123.8 16.0 116 613-735 2-120 (196)
99 PRK10365 transcriptional regul 99.4 3.1E-12 6.7E-17 144.4 14.4 118 612-733 5-123 (441)
100 PRK09581 pleD response regulat 99.4 1.9E-12 4.2E-17 146.0 12.1 119 611-732 154-273 (457)
101 PRK11697 putative two-componen 99.4 7.1E-12 1.5E-16 129.0 15.3 113 613-732 2-117 (238)
102 TIGR02915 PEP_resp_reg putativ 99.4 5.1E-12 1.1E-16 142.7 15.1 113 615-733 1-119 (445)
103 TIGR01818 ntrC nitrogen regula 99.4 8E-12 1.7E-16 141.9 15.4 114 615-732 1-115 (463)
104 PF00512 HisKA: His Kinase A ( 99.3 5.5E-12 1.2E-16 103.2 9.9 66 343-408 1-68 (68)
105 PRK10710 DNA-binding transcrip 99.3 2.7E-11 5.8E-16 124.3 16.9 115 614-733 12-127 (240)
106 PRK11475 DNA-binding transcrip 99.3 1.5E-11 3.2E-16 123.5 13.9 110 624-737 2-119 (207)
107 PRK15479 transcriptional regul 99.3 3E-11 6.6E-16 122.0 16.3 116 614-733 2-118 (221)
108 PRK12555 chemotaxis-specific m 99.3 1.5E-11 3.4E-16 133.5 14.9 115 613-732 1-129 (337)
109 TIGR01052 top6b DNA topoisomer 99.3 9.8E-12 2.1E-16 137.5 13.0 102 454-574 23-131 (488)
110 COG3851 UhpB Signal transducti 99.3 2.4E-09 5.2E-14 110.4 28.4 240 290-584 248-493 (497)
111 PRK09390 fixJ response regulat 99.3 4.6E-11 9.9E-16 118.3 14.0 117 613-733 4-121 (202)
112 PRK00742 chemotaxis-specific m 99.3 7.3E-11 1.6E-15 129.2 15.8 116 612-732 3-132 (354)
113 PRK15411 rcsA colanic acid cap 99.3 9.5E-11 2.1E-15 118.0 15.1 119 614-737 2-127 (207)
114 cd00075 HATPase_c Histidine ki 99.3 4.6E-11 1E-15 104.3 11.0 100 460-582 1-102 (103)
115 PRK09581 pleD response regulat 99.2 9.9E-11 2.1E-15 132.1 15.9 118 614-733 4-122 (457)
116 PRK13558 bacterio-opsin activa 99.2 6.8E-11 1.5E-15 140.5 15.0 118 612-733 7-127 (665)
117 PRK13435 response regulator; P 99.2 2E-10 4.2E-15 108.7 15.3 115 612-734 5-122 (145)
118 PRK10610 chemotaxis regulatory 99.2 3.7E-10 8E-15 102.0 16.3 120 612-733 5-126 (129)
119 PRK10651 transcriptional regul 99.2 2.6E-10 5.7E-15 114.5 16.6 118 613-734 7-127 (216)
120 PRK15369 two component system 99.2 3E-10 6.4E-15 113.1 16.5 119 612-734 3-124 (211)
121 TIGR01925 spIIAB anti-sigma F 99.2 1.1E-10 2.4E-15 109.6 12.2 96 456-582 36-135 (137)
122 PRK10403 transcriptional regul 99.2 3.5E-10 7.7E-15 113.3 16.6 117 613-733 7-126 (215)
123 PRK14867 DNA topoisomerase VI 99.2 6.2E-11 1.3E-15 134.9 12.1 111 457-587 34-151 (659)
124 COG2201 CheB Chemotaxis respon 99.2 8.9E-11 1.9E-15 123.9 12.3 102 613-719 2-108 (350)
125 COG3707 AmiR Response regulato 99.2 1.2E-10 2.5E-15 111.5 11.7 114 612-730 5-120 (194)
126 COG0643 CheA Chemotaxis protei 99.2 1.4E-09 3E-14 126.7 21.1 146 417-587 390-575 (716)
127 COG4585 Signal transduction hi 99.2 1.4E-08 3.1E-13 111.6 28.1 111 435-585 255-365 (365)
128 PRK03660 anti-sigma F factor; 99.1 7.1E-10 1.5E-14 105.3 12.8 101 456-587 36-140 (146)
129 PRK09191 two-component respons 99.1 1.8E-09 4E-14 112.6 15.6 114 613-733 138-254 (261)
130 COG3920 Signal transduction hi 99.1 5.4E-08 1.2E-12 98.6 24.0 192 343-586 18-216 (221)
131 COG3275 LytS Putative regulato 99.0 5.8E-06 1.3E-10 89.1 38.6 236 268-587 308-553 (557)
132 PRK10693 response regulator of 99.0 2.1E-09 4.5E-14 115.0 12.6 88 641-732 2-91 (303)
133 cd00156 REC Signal receiver do 99.0 5.7E-09 1.2E-13 90.3 13.1 111 616-730 1-112 (113)
134 COG2972 Predicted signal trans 98.9 6.3E-07 1.4E-11 101.4 27.9 96 456-586 350-453 (456)
135 PRK04069 serine-protein kinase 98.8 5.4E-08 1.2E-12 94.0 12.6 102 456-586 39-144 (161)
136 COG3279 LytT Response regulato 98.8 2.7E-08 5.7E-13 102.7 9.8 112 613-730 2-116 (244)
137 COG4564 Signal transduction hi 98.8 9.1E-05 2E-09 76.3 34.7 187 355-586 262-448 (459)
138 PRK15029 arginine decarboxylas 98.7 5E-08 1.1E-12 114.2 12.3 105 614-723 2-122 (755)
139 PRK15429 formate hydrogenlyase 98.7 2E-06 4.2E-11 102.4 24.7 179 136-328 177-362 (686)
140 KOG0787 Dehydrogenase kinase [ 98.7 3.7E-06 8.1E-11 88.0 21.4 150 415-586 214-381 (414)
141 TIGR01924 rsbW_low_gc serine-p 98.6 3.7E-07 8.1E-12 87.9 12.0 101 457-586 40-144 (159)
142 smart00388 HisKA His Kinase A 98.6 2E-07 4.4E-12 74.4 8.5 64 344-407 2-65 (66)
143 PF14501 HATPase_c_5: GHKL dom 98.4 4.3E-06 9.4E-11 73.9 12.2 84 456-571 2-89 (100)
144 PRK11061 fused phosphoenolpyru 98.4 4.2E-05 9E-10 91.1 23.1 159 144-316 3-163 (748)
145 PRK11107 hybrid sensory histid 98.3 6.3E-06 1.4E-10 101.9 14.6 118 609-731 533-650 (919)
146 cd00082 HisKA Histidine Kinase 98.2 7.3E-06 1.6E-10 64.7 8.2 62 343-404 3-65 (65)
147 COG1389 DNA topoisomerase VI, 98.2 8.9E-06 1.9E-10 87.1 10.2 113 457-588 34-153 (538)
148 COG3706 PleD Response regulato 98.2 1.6E-06 3.4E-11 95.0 4.4 92 637-734 13-105 (435)
149 TIGR00585 mutl DNA mismatch re 98.1 1.4E-05 3E-10 85.8 11.1 95 458-579 21-122 (312)
150 TIGR01817 nifA Nif-specific re 98.1 0.00017 3.7E-09 83.4 20.1 157 144-314 5-163 (534)
151 PF13492 GAF_3: GAF domain; PD 98.1 9.2E-05 2E-09 67.6 13.8 129 158-309 1-129 (129)
152 PF01590 GAF: GAF domain; Int 98.0 8.1E-05 1.7E-09 70.3 11.9 136 158-307 1-154 (154)
153 PF13581 HATPase_c_2: Histidin 97.8 0.00013 2.9E-09 67.0 10.1 92 456-581 28-123 (125)
154 PRK05022 anaerobic nitric oxid 97.7 0.0016 3.4E-08 74.9 19.4 157 145-316 5-165 (509)
155 PRK15429 formate hydrogenlyase 97.7 0.00083 1.8E-08 80.2 17.5 165 145-325 10-179 (686)
156 COG2172 RsbW Anti-sigma regula 97.5 0.0011 2.3E-08 62.7 11.9 89 456-574 37-130 (146)
157 smart00065 GAF Domain present 97.5 0.005 1.1E-07 55.9 15.3 141 158-315 1-147 (149)
158 PF06490 FleQ: Flagellar regul 97.4 0.001 2.2E-08 59.7 9.9 106 614-730 1-107 (109)
159 PRK00095 mutL DNA mismatch rep 97.1 0.002 4.4E-08 75.5 10.1 88 459-573 22-115 (617)
160 PF13185 GAF_2: GAF domain; PD 97.0 0.0071 1.5E-07 56.4 11.4 135 157-308 2-148 (148)
161 smart00448 REC cheY-homologous 96.9 0.0054 1.2E-07 44.5 7.5 53 614-666 2-55 (55)
162 COG3605 PtsP Signal transducti 96.8 0.14 3E-06 57.4 20.2 154 146-313 5-160 (756)
163 PF13589 HATPase_c_3: Histidin 96.7 0.0011 2.3E-08 62.2 2.9 100 461-585 4-107 (137)
164 PRK02261 methylaspartate mutas 96.7 0.058 1.3E-06 50.4 14.4 119 612-734 3-137 (137)
165 cd02071 MM_CoA_mut_B12_BD meth 96.5 0.053 1.2E-06 49.6 12.9 107 619-728 10-121 (122)
166 TIGR00640 acid_CoA_mut_C methy 95.8 0.22 4.7E-06 46.3 12.9 111 619-732 13-128 (132)
167 PRK05559 DNA topoisomerase IV 95.6 0.022 4.8E-07 66.8 7.0 82 456-560 34-130 (631)
168 COG2203 FhlA FOG: GAF domain [ 95.1 0.03 6.5E-07 52.7 5.0 157 145-315 5-170 (175)
169 cd02067 B12-binding B12 bindin 94.6 0.43 9.3E-06 43.2 11.1 93 619-716 10-109 (119)
170 PRK13558 bacterio-opsin activa 94.4 1.8 4E-05 51.5 19.0 143 146-309 290-437 (665)
171 PRK05644 gyrB DNA gyrase subun 94.4 0.16 3.4E-06 59.8 9.5 82 456-560 34-130 (638)
172 TIGR01059 gyrB DNA gyrase, B s 94.2 0.092 2E-06 62.1 7.1 82 456-560 27-123 (654)
173 TIGR01501 MthylAspMutase methy 94.0 1.1 2.3E-05 41.6 12.3 111 619-732 12-133 (134)
174 COG0323 MutL DNA mismatch repa 93.9 0.05 1.1E-06 63.9 4.0 59 459-539 23-81 (638)
175 COG5381 Uncharacterized protei 93.8 0.11 2.4E-06 47.6 5.1 26 462-487 66-91 (184)
176 COG3604 FhlA Transcriptional r 93.5 3.2 6.9E-05 46.5 16.6 165 144-324 34-205 (550)
177 COG5385 Uncharacterized protei 93.4 7.3 0.00016 36.9 18.0 182 347-571 18-202 (214)
178 COG2185 Sbm Methylmalonyl-CoA 93.1 2.1 4.5E-05 40.0 12.3 113 618-732 22-138 (143)
179 TIGR01055 parE_Gneg DNA topois 92.9 0.26 5.7E-06 57.8 7.8 79 459-560 30-123 (625)
180 PRK14083 HSP90 family protein; 92.8 0.086 1.9E-06 61.3 3.6 76 462-558 26-117 (601)
181 cd02072 Glm_B12_BD B12 binding 92.7 2.4 5.3E-05 39.0 12.1 106 619-728 10-127 (128)
182 PRK05218 heat shock protein 90 92.5 0.34 7.5E-06 56.8 8.0 59 512-574 74-144 (613)
183 TIGR03815 CpaE_hom_Actino heli 91.1 0.91 2E-05 49.0 9.0 85 636-731 1-86 (322)
184 PF03709 OKR_DC_1_N: Orn/Lys/A 90.4 1.5 3.2E-05 39.6 8.3 100 626-730 7-111 (115)
185 smart00433 TOP2c Topoisomerase 90.0 0.46 1E-05 55.6 5.8 76 461-559 3-93 (594)
186 PF10090 DUF2328: Uncharacteri 89.4 23 0.0005 34.8 16.8 170 360-571 2-174 (182)
187 COG4999 Uncharacterized domain 88.9 2.1 4.5E-05 38.2 7.5 112 609-727 8-121 (140)
188 cd04728 ThiG Thiazole synthase 88.9 3.8 8.3E-05 41.8 10.5 102 618-731 106-224 (248)
189 PRK14939 gyrB DNA gyrase subun 87.9 0.95 2.1E-05 54.0 6.5 80 458-560 36-130 (756)
190 PF02310 B12-binding: B12 bind 87.9 8.5 0.00018 34.5 11.5 94 620-717 12-112 (121)
191 cd02069 methionine_synthase_B1 86.9 5.7 0.00012 40.1 10.6 97 614-715 90-200 (213)
192 cd02070 corrinoid_protein_B12- 86.8 8.8 0.00019 38.3 11.9 95 614-715 84-190 (201)
193 PRK00208 thiG thiazole synthas 86.3 6.3 0.00014 40.3 10.4 102 618-731 106-224 (250)
194 PTZ00272 heat shock protein 83 85.1 0.88 1.9E-05 53.8 4.2 21 511-531 72-92 (701)
195 PF04340 DUF484: Protein of un 84.4 4 8.7E-05 41.6 8.2 64 123-186 53-120 (225)
196 PRK09426 methylmalonyl-CoA mut 82.5 14 0.0003 44.3 12.7 110 619-733 593-709 (714)
197 PRK03958 tRNA 2'-O-methylase; 82.2 15 0.00033 35.5 10.5 111 614-736 33-153 (176)
198 PRK00043 thiE thiamine-phospha 81.7 24 0.00052 35.2 12.6 92 635-731 103-208 (212)
199 PF11849 DUF3369: Domain of un 80.7 58 0.0012 31.6 14.8 41 143-183 21-61 (174)
200 COG0326 HtpG Molecular chapero 80.3 1.5 3.2E-05 50.5 3.5 49 512-560 75-134 (623)
201 TIGR02370 pyl_corrinoid methyl 80.3 14 0.0003 36.8 10.1 92 619-715 95-192 (197)
202 PRK15399 lysine decarboxylase 77.5 20 0.00044 42.7 11.8 98 614-718 2-107 (713)
203 PRK01130 N-acetylmannosamine-6 77.1 26 0.00057 35.4 11.3 80 631-715 113-201 (221)
204 PRK00278 trpC indole-3-glycero 76.1 53 0.0011 34.2 13.4 96 626-725 150-254 (260)
205 PRK15400 lysine decarboxylase 75.2 23 0.0005 42.3 11.4 77 614-697 2-86 (714)
206 PF10087 DUF2325: Uncharacteri 74.7 37 0.00079 29.4 10.0 87 614-706 1-93 (97)
207 PTZ00130 heat shock protein 90 74.3 2.2 4.8E-05 50.9 2.8 46 512-557 136-192 (814)
208 KOG1979 DNA mismatch repair pr 73.7 4.4 9.5E-05 45.8 4.7 54 463-538 31-84 (694)
209 PLN03237 DNA topoisomerase 2; 72.5 5.8 0.00013 50.3 5.9 55 512-566 112-178 (1465)
210 KOG1977 DNA mismatch repair pr 71.2 6 0.00013 45.7 5.1 58 458-538 20-77 (1142)
211 PF14689 SPOB_a: Sensor_kinase 69.4 27 0.00058 27.7 7.1 45 347-395 15-59 (62)
212 TIGR03151 enACPred_II putative 68.4 43 0.00093 35.9 10.8 83 628-715 101-189 (307)
213 PRK07114 keto-hydroxyglutarate 68.1 50 0.0011 33.5 10.6 95 630-728 10-109 (222)
214 cd04726 KGPDC_HPS 3-Keto-L-gul 67.8 76 0.0016 31.3 11.9 84 626-715 93-185 (202)
215 PF07568 HisKA_2: Histidine ki 67.6 44 0.00096 27.6 8.5 72 351-431 2-73 (76)
216 cd04729 NanE N-acetylmannosami 67.5 67 0.0015 32.3 11.6 87 624-716 111-206 (219)
217 TIGR01163 rpe ribulose-phospha 67.2 59 0.0013 32.2 11.1 86 630-716 98-193 (210)
218 TIGR01058 parE_Gpos DNA topois 66.4 5 0.00011 47.3 3.4 83 456-561 31-128 (637)
219 PTZ00108 DNA topoisomerase 2-l 65.3 6.5 0.00014 49.9 4.3 51 512-562 95-157 (1388)
220 PHA02569 39 DNA topoisomerase 64.3 3.5 7.6E-05 48.3 1.6 51 512-562 80-144 (602)
221 CHL00162 thiG thiamin biosynth 64.0 1.5E+02 0.0032 30.7 12.8 105 620-731 122-238 (267)
222 KOG1978 DNA mismatch repair pr 63.7 8 0.00017 44.8 4.2 56 461-538 22-77 (672)
223 PF03729 DUF308: Short repeat 63.1 32 0.0007 27.4 6.8 55 46-105 16-70 (72)
224 cd00331 IGPS Indole-3-glycerol 63.0 1.1E+02 0.0024 30.7 12.1 79 633-715 118-200 (217)
225 cd00452 KDPG_aldolase KDPG and 61.8 56 0.0012 32.1 9.5 76 634-716 95-171 (190)
226 PRK05458 guanosine 5'-monophos 61.6 1.2E+02 0.0026 32.8 12.5 96 614-715 113-229 (326)
227 TIGR01334 modD putative molybd 61.1 86 0.0019 33.0 11.1 70 639-714 192-261 (277)
228 cd00429 RPE Ribulose-5-phospha 61.0 1E+02 0.0022 30.4 11.5 89 625-715 95-193 (211)
229 cd02068 radical_SAM_B12_BD B12 60.9 1.1E+02 0.0024 27.6 10.8 105 623-733 3-113 (127)
230 PTZ00109 DNA gyrase subunit b; 60.5 0.74 1.6E-05 55.1 -4.8 16 512-527 162-177 (903)
231 PF01408 GFO_IDH_MocA: Oxidore 60.4 74 0.0016 28.2 9.4 47 687-733 64-112 (120)
232 PF05690 ThiG: Thiazole biosyn 60.1 79 0.0017 32.2 9.9 104 620-730 108-223 (247)
233 PRK11889 flhF flagellar biosyn 59.9 1.3E+02 0.0027 33.7 12.3 108 612-719 269-388 (436)
234 PF02581 TMP-TENI: Thiamine mo 58.3 63 0.0014 31.5 9.1 81 628-714 88-175 (180)
235 cd01568 QPRTase_NadC Quinolina 57.9 56 0.0012 34.2 9.1 70 639-715 185-254 (269)
236 PF14248 DUF4345: Domain of un 57.7 76 0.0017 28.8 9.0 63 28-93 50-112 (124)
237 PRK05848 nicotinate-nucleotide 57.6 1.2E+02 0.0026 31.9 11.4 70 640-715 187-256 (273)
238 PRK14974 cell division protein 57.6 1.3E+02 0.0028 32.7 12.1 107 613-719 169-290 (336)
239 PF01729 QRPTase_C: Quinolinat 57.4 43 0.00092 32.5 7.5 70 640-715 85-154 (169)
240 PRK11840 bifunctional sulfur c 56.7 1.1E+02 0.0025 32.7 11.1 107 618-731 180-298 (326)
241 PF12805 FUSC-like: FUSC-like 56.3 2.5E+02 0.0055 29.4 14.0 84 27-111 3-98 (284)
242 cd00564 TMP_TenI Thiamine mono 55.8 1E+02 0.0022 29.8 10.3 74 636-715 95-177 (196)
243 PRK12724 flagellar biosynthesi 55.5 1.4E+02 0.003 33.5 12.0 106 613-719 253-370 (432)
244 PRK07896 nicotinate-nucleotide 55.3 80 0.0017 33.5 9.7 71 638-714 202-272 (289)
245 PF07332 DUF1469: Protein of u 55.1 92 0.002 28.0 9.0 23 92-114 76-98 (121)
246 PRK08385 nicotinate-nucleotide 55.0 1E+02 0.0022 32.5 10.4 95 614-715 156-258 (278)
247 PF02254 TrkA_N: TrkA-N domain 54.7 88 0.0019 27.5 8.8 92 613-715 22-115 (116)
248 TIGR00693 thiE thiamine-phosph 53.8 97 0.0021 30.4 9.8 71 640-715 101-179 (196)
249 PRK06731 flhF flagellar biosyn 53.3 1.9E+02 0.004 30.4 12.0 94 626-719 120-222 (270)
250 cd05212 NAD_bind_m-THF_DH_Cycl 53.0 60 0.0013 30.4 7.5 55 609-667 25-83 (140)
251 PRK12704 phosphodiesterase; Pr 52.6 14 0.0003 42.6 3.9 43 690-732 252-296 (520)
252 cd04730 NPD_like 2-Nitropropan 52.0 2.1E+02 0.0045 28.9 12.2 81 631-716 97-185 (236)
253 PRK06543 nicotinate-nucleotide 51.8 1.1E+02 0.0023 32.3 9.9 92 614-714 161-263 (281)
254 TIGR00343 pyridoxal 5'-phospha 51.7 85 0.0019 32.9 9.0 113 613-732 113-249 (287)
255 PRK07428 nicotinate-nucleotide 51.7 75 0.0016 33.7 8.8 69 640-714 201-269 (288)
256 PLN03128 DNA topoisomerase 2; 51.5 22 0.00047 44.8 5.5 50 512-561 87-148 (1135)
257 PRK10669 putative cation:proto 51.0 1.6E+02 0.0034 34.4 12.4 110 612-735 440-551 (558)
258 PRK00811 spermidine synthase; 50.6 88 0.0019 33.0 9.3 68 614-681 102-181 (283)
259 PRK06552 keto-hydroxyglutarate 50.4 1.5E+02 0.0032 30.0 10.4 95 630-727 8-105 (213)
260 cd04727 pdxS PdxS is a subunit 49.8 69 0.0015 33.6 7.9 59 669-732 181-246 (283)
261 COG0157 NadC Nicotinate-nucleo 49.5 2.1E+02 0.0046 30.0 11.4 92 615-713 161-259 (280)
262 PRK05718 keto-hydroxyglutarate 48.8 1.7E+02 0.0036 29.6 10.5 91 630-728 10-105 (212)
263 PRK04457 spermidine synthase; 48.5 2E+02 0.0043 30.0 11.4 71 612-682 90-168 (262)
264 PRK01362 putative translaldola 48.0 1.1E+02 0.0025 30.8 9.1 86 630-717 95-185 (214)
265 PRK07107 inosine 5-monophospha 47.7 1.1E+02 0.0024 35.2 10.0 104 612-715 254-380 (502)
266 PRK06096 molybdenum transport 47.5 84 0.0018 33.2 8.4 70 639-714 193-262 (284)
267 PRK12726 flagellar biosynthesi 47.3 2.4E+02 0.0051 31.3 11.9 90 627-718 252-352 (407)
268 PRK05637 anthranilate synthase 47.2 59 0.0013 32.6 7.0 48 614-661 3-50 (208)
269 PLN02274 inosine-5'-monophosph 47.0 2.4E+02 0.0052 32.5 12.7 99 612-715 260-379 (505)
270 cd01572 QPRTase Quinolinate ph 46.1 1.5E+02 0.0033 31.0 10.1 92 614-714 154-252 (268)
271 PRK06015 keto-hydroxyglutarate 45.6 1.3E+02 0.0027 30.1 8.9 57 664-726 36-92 (201)
272 PRK10263 DNA translocase FtsK; 45.5 1.2E+02 0.0027 38.5 10.5 20 22-41 70-92 (1355)
273 PRK05703 flhF flagellar biosyn 45.4 2.2E+02 0.0048 32.0 11.9 104 614-719 253-368 (424)
274 COG0512 PabA Anthranilate/para 45.1 35 0.00077 33.5 4.8 52 613-664 2-54 (191)
275 PRK05581 ribulose-phosphate 3- 45.0 2.9E+02 0.0063 27.4 11.9 100 630-730 103-217 (220)
276 COG0187 GyrB Type IIA topoisom 44.9 17 0.00036 42.1 2.9 49 512-560 69-129 (635)
277 PF10856 DUF2678: Protein of u 44.4 39 0.00085 30.2 4.4 32 27-58 65-98 (118)
278 PRK09140 2-dehydro-3-deoxy-6-p 44.4 1.7E+02 0.0036 29.3 9.7 91 631-728 6-101 (206)
279 TIGR01182 eda Entner-Doudoroff 44.0 1.6E+02 0.0034 29.6 9.3 80 639-726 13-96 (204)
280 PRK07695 transcriptional regul 43.8 1.8E+02 0.004 28.7 10.0 85 641-731 101-197 (201)
281 TIGR00064 ftsY signal recognit 43.4 3.6E+02 0.0079 28.2 12.5 106 613-718 101-227 (272)
282 TIGR00875 fsa_talC_mipB fructo 42.5 1.3E+02 0.0028 30.3 8.6 85 630-715 95-184 (213)
283 PTZ00314 inosine-5'-monophosph 42.3 2E+02 0.0043 33.0 11.1 99 612-715 253-372 (495)
284 PF03060 NMO: Nitronate monoox 42.1 2.1E+02 0.0045 30.9 10.8 81 630-715 130-218 (330)
285 PF03602 Cons_hypoth95: Conser 42.1 64 0.0014 31.7 6.2 62 614-677 67-137 (183)
286 PLN02716 nicotinate-nucleotide 41.8 1.4E+02 0.0031 31.8 9.0 69 640-713 208-287 (308)
287 TIGR00007 phosphoribosylformim 41.7 3.2E+02 0.0068 27.5 11.6 65 646-715 148-217 (230)
288 PRK08883 ribulose-phosphate 3- 41.7 2.3E+02 0.005 28.7 10.3 101 630-732 100-216 (220)
289 cd00956 Transaldolase_FSA Tran 41.2 2E+02 0.0043 28.9 9.7 84 631-715 96-184 (211)
290 TIGR00078 nadC nicotinate-nucl 41.1 1.1E+02 0.0024 32.0 8.0 93 614-715 150-249 (265)
291 COG1419 FlhF Flagellar GTP-bin 40.7 2.7E+02 0.0058 31.0 11.1 93 626-719 250-349 (407)
292 PF06103 DUF948: Bacterial pro 40.4 1.5E+02 0.0033 25.1 7.6 60 96-155 5-65 (90)
293 COG4377 Predicted membrane pro 40.2 53 0.0012 32.3 5.0 42 29-70 15-60 (258)
294 PRK03659 glutathione-regulated 39.8 2.1E+02 0.0045 33.8 11.1 94 612-716 423-518 (601)
295 TIGR03128 RuMP_HxlA 3-hexulose 39.5 3.8E+02 0.0083 26.3 13.9 99 626-729 92-204 (206)
296 cd01573 modD_like ModD; Quinol 39.5 1.7E+02 0.0036 30.8 9.2 70 639-715 187-257 (272)
297 TIGR00417 speE spermidine synt 39.4 2.3E+02 0.0049 29.6 10.3 69 614-682 98-177 (270)
298 PRK05415 hypothetical protein; 39.4 3E+02 0.0064 29.9 11.1 44 68-117 87-130 (341)
299 TIGR00799 mtp Golgi 4-transmem 39.3 1.2E+02 0.0026 30.6 7.4 92 18-112 56-157 (258)
300 PRK08072 nicotinate-nucleotide 39.2 1.8E+02 0.0039 30.6 9.3 67 640-715 193-259 (277)
301 PF12292 DUF3624: Protein of u 39.1 37 0.00079 28.1 3.2 56 3-63 2-59 (77)
302 PRK05567 inosine 5'-monophosph 39.1 3.5E+02 0.0077 31.0 12.5 101 612-715 240-359 (486)
303 PRK13125 trpA tryptophan synth 39.0 4.2E+02 0.009 27.2 12.0 85 627-717 120-215 (244)
304 PRK06843 inosine 5-monophospha 38.7 3.2E+02 0.0069 30.5 11.5 71 642-715 202-284 (404)
305 PF07851 TMPIT: TMPIT-like pro 38.1 5.5E+02 0.012 27.8 13.2 73 334-408 24-96 (330)
306 COG4708 Predicted membrane pro 37.7 1.9E+02 0.0041 27.1 7.8 81 25-108 74-160 (169)
307 PRK11359 cyclic-di-GMP phospho 37.7 1.7E+02 0.0037 35.4 10.5 106 621-730 677-794 (799)
308 TIGR03704 PrmC_rel_meth putati 37.6 3.6E+02 0.0079 27.8 11.3 97 613-710 111-233 (251)
309 PRK06231 F0F1 ATP synthase sub 37.6 2.1E+02 0.0045 28.7 9.1 17 51-67 9-30 (205)
310 PRK05742 nicotinate-nucleotide 37.4 1.7E+02 0.0037 30.8 8.8 67 640-715 194-260 (277)
311 COG3071 HemY Uncharacterized e 37.3 3.2E+02 0.0069 30.1 10.8 76 52-128 2-83 (400)
312 cd02065 B12-binding_like B12 b 37.3 2E+02 0.0043 25.5 8.4 61 619-679 10-75 (125)
313 TIGR01425 SRP54_euk signal rec 37.2 3.6E+02 0.0078 30.4 11.7 11 716-726 282-292 (429)
314 PRK10963 hypothetical protein; 37.1 4.6E+02 0.0099 26.5 15.5 63 122-185 49-115 (223)
315 COG0626 MetC Cystathionine bet 36.8 2.2E+02 0.0047 31.7 9.8 100 612-715 102-206 (396)
316 PLN02591 tryptophan synthase 36.7 1.2E+02 0.0025 31.6 7.3 58 669-731 65-128 (250)
317 PRK06559 nicotinate-nucleotide 36.5 2.6E+02 0.0057 29.6 10.0 92 614-714 169-267 (290)
318 PF11833 DUF3353: Protein of u 36.2 1E+02 0.0022 30.7 6.5 38 38-75 127-164 (194)
319 TIGR01620 hyp_HI0043 conserved 36.2 5E+02 0.011 27.5 11.9 25 146-170 119-143 (289)
320 COG0036 Rpe Pentose-5-phosphat 36.1 4E+02 0.0087 27.0 10.7 96 618-716 92-197 (220)
321 PLN02823 spermine synthase 36.0 1.5E+02 0.0033 32.2 8.4 53 614-666 129-187 (336)
322 PRK12723 flagellar biosynthesi 36.0 5E+02 0.011 28.8 12.6 105 614-719 208-323 (388)
323 cd08766 Cyt_b561_ACYB-1_like P 36.0 3.8E+02 0.0082 25.2 10.1 10 70-79 94-103 (144)
324 COG3159 Uncharacterized protei 35.3 4.8E+02 0.01 26.2 13.4 60 122-181 50-113 (218)
325 TIGR00736 nifR3_rel_arch TIM-b 35.1 1.6E+02 0.0035 30.1 8.0 42 670-715 178-219 (231)
326 COG0742 N6-adenine-specific me 34.8 97 0.0021 30.5 6.0 52 614-665 68-124 (187)
327 PF02882 THF_DHG_CYH_C: Tetrah 34.3 69 0.0015 30.7 4.9 60 609-668 33-92 (160)
328 PRK12656 fructose-6-phosphate 34.3 2.8E+02 0.0061 28.1 9.5 82 631-713 100-186 (222)
329 TIGR00262 trpA tryptophan synt 34.2 1.4E+02 0.0031 30.9 7.6 14 620-633 53-66 (256)
330 PRK12653 fructose-6-phosphate 34.2 2.2E+02 0.0048 28.8 8.8 84 630-714 97-185 (220)
331 PRK12655 fructose-6-phosphate 33.8 2.4E+02 0.0051 28.7 8.9 83 630-713 97-184 (220)
332 PF10086 DUF2324: Putative mem 33.7 1.7E+02 0.0038 29.7 7.9 35 32-66 2-36 (223)
333 COG1856 Uncharacterized homolo 33.6 3.6E+02 0.0078 27.4 9.6 86 631-719 144-254 (275)
334 PRK05749 3-deoxy-D-manno-octul 33.5 1.7E+02 0.0037 32.5 8.8 113 612-735 262-390 (425)
335 PF01081 Aldolase: KDPG and KH 33.4 2E+02 0.0042 28.7 8.0 88 631-726 4-96 (196)
336 KOG1608 Protein transporter of 33.3 5E+02 0.011 27.4 10.9 29 51-79 246-275 (374)
337 KOG1562 Spermidine synthase [A 33.2 1.6E+02 0.0034 31.3 7.4 62 614-675 147-215 (337)
338 PRK06978 nicotinate-nucleotide 33.1 1.3E+02 0.0029 31.8 7.2 66 640-714 210-275 (294)
339 COG0134 TrpC Indole-3-glycerol 32.7 3E+02 0.0065 28.6 9.4 82 629-715 149-235 (254)
340 PRK11036 putative S-adenosyl-L 32.6 3.8E+02 0.0083 27.4 10.6 70 612-681 66-139 (255)
341 TIGR01761 thiaz-red thiazoliny 32.5 3.4E+02 0.0073 29.6 10.4 105 613-733 4-114 (343)
342 PRK05458 guanosine 5'-monophos 32.2 1.6E+02 0.0035 31.8 7.8 64 646-714 100-166 (326)
343 PRK10742 putative methyltransf 32.1 3E+02 0.0064 28.5 9.3 59 611-669 109-178 (250)
344 COG4965 TadB Flp pilus assembl 32.0 4.3E+02 0.0094 28.2 10.7 31 141-171 137-167 (309)
345 TIGR01304 IMP_DH_rel_2 IMP deh 31.8 2.3E+02 0.0051 31.1 9.1 29 687-715 255-283 (369)
346 cd02809 alpha_hydroxyacid_oxid 31.8 3.6E+02 0.0078 28.6 10.5 87 626-715 162-255 (299)
347 PRK03612 spermidine synthase; 31.7 2.5E+02 0.0055 32.5 9.9 69 614-682 323-406 (521)
348 cd00381 IMPDH IMPDH: The catal 31.7 4.5E+02 0.0097 28.3 11.2 100 612-715 106-225 (325)
349 PF02300 Fumarate_red_C: Fumar 31.5 3E+02 0.0065 25.4 8.1 70 39-115 23-96 (129)
350 PF01596 Methyltransf_3: O-met 31.3 1.4E+02 0.003 29.9 6.7 66 613-680 71-144 (205)
351 PF00448 SRP54: SRP54-type pro 31.1 1.7E+02 0.0038 28.9 7.4 95 623-719 43-151 (196)
352 COG2022 ThiG Uncharacterized e 30.9 3.1E+02 0.0068 28.0 8.8 88 621-715 116-210 (262)
353 PRK13111 trpA tryptophan synth 30.8 1.7E+02 0.0037 30.4 7.5 57 670-730 76-138 (258)
354 PRK07649 para-aminobenzoate/an 30.6 58 0.0013 32.3 3.9 48 615-662 2-50 (195)
355 PF04973 NMN_transporter: Nico 30.5 3.4E+02 0.0074 26.3 9.3 82 18-107 41-132 (181)
356 PF04131 NanE: Putative N-acet 30.4 1.3E+02 0.0029 29.6 6.1 70 636-715 45-117 (192)
357 PRK13587 1-(5-phosphoribosyl)- 30.2 2.1E+02 0.0045 29.3 8.0 54 657-715 164-220 (234)
358 PRK07455 keto-hydroxyglutarate 30.1 2.2E+02 0.0048 27.9 7.9 66 642-713 112-177 (187)
359 PF00218 IGPS: Indole-3-glycer 29.7 3.4E+02 0.0075 28.2 9.4 86 627-716 149-238 (254)
360 KOG3040 Predicted sugar phosph 29.2 1.4E+02 0.003 29.9 6.0 83 622-734 50-138 (262)
361 cd04723 HisA_HisF Phosphoribos 29.2 2.1E+02 0.0046 29.1 7.9 66 645-715 148-217 (233)
362 COG0813 DeoD Purine-nucleoside 28.9 63 0.0014 32.5 3.6 50 453-524 19-69 (236)
363 cd01948 EAL EAL domain. This d 28.8 2.4E+02 0.0052 28.1 8.3 90 629-721 138-239 (240)
364 PF10754 DUF2569: Protein of u 28.7 3.9E+02 0.0084 25.2 9.0 43 20-62 54-97 (149)
365 cd04724 Tryptophan_synthase_al 28.6 2.1E+02 0.0047 29.3 7.8 56 670-730 64-125 (242)
366 PRK10558 alpha-dehydro-beta-de 28.4 5.8E+02 0.012 26.5 11.0 81 646-729 30-112 (256)
367 smart00052 EAL Putative diguan 28.3 2.7E+02 0.0058 27.7 8.5 90 629-721 139-240 (241)
368 PRK03562 glutathione-regulated 28.2 3.3E+02 0.0071 32.3 10.2 93 612-715 423-517 (621)
369 PRK04987 fumarate reductase su 28.1 2.4E+02 0.0052 26.0 6.9 76 37-117 22-99 (130)
370 PRK01581 speE spermidine synth 28.0 3.5E+02 0.0075 29.8 9.4 69 614-682 176-259 (374)
371 PRK14723 flhF flagellar biosyn 27.9 5.3E+02 0.011 31.4 11.7 88 626-716 232-331 (767)
372 PF00556 LHC: Antenna complex 27.9 1.1E+02 0.0023 22.0 3.7 29 50-80 10-38 (40)
373 COG4587 ABC-type uncharacteriz 27.8 3.3E+02 0.0072 28.1 8.5 62 17-79 103-175 (268)
374 PRK06106 nicotinate-nucleotide 27.8 2.9E+02 0.0063 29.1 8.6 66 640-714 199-264 (281)
375 PF01564 Spermine_synth: Sperm 27.7 1.1E+02 0.0023 31.7 5.3 69 614-682 102-182 (246)
376 PRK01911 ppnK inorganic polyph 27.6 5.9E+02 0.013 27.0 11.0 87 626-734 19-121 (292)
377 cd04732 HisA HisA. Phosphorib 27.3 6.2E+02 0.013 25.3 11.0 66 645-715 148-218 (234)
378 TIGR01302 IMP_dehydrog inosine 26.9 7.9E+02 0.017 27.8 12.6 101 612-715 236-355 (450)
379 PRK04302 triosephosphate isome 26.9 6.6E+02 0.014 25.2 12.9 87 625-716 104-202 (223)
380 PRK07028 bifunctional hexulose 26.8 9.3E+02 0.02 26.9 13.2 99 629-733 100-212 (430)
381 PRK14722 flhF flagellar biosyn 26.8 4.6E+02 0.01 28.9 10.3 77 626-703 184-263 (374)
382 TIGR00138 gidB 16S rRNA methyl 26.7 6E+02 0.013 24.7 11.0 101 613-721 67-173 (181)
383 PRK13566 anthranilate synthase 26.6 1.1E+02 0.0024 36.8 6.0 52 609-661 523-575 (720)
384 KOG1478 3-keto sterol reductas 26.5 39 0.00084 34.8 1.8 16 546-561 11-26 (341)
385 PRK06843 inosine 5-monophospha 26.4 2.7E+02 0.0058 31.1 8.4 63 647-714 157-220 (404)
386 cd07955 Anticodon_Ia_Cys_like 26.3 1.6E+02 0.0034 24.6 5.2 28 342-369 28-57 (81)
387 cd00546 QFR_TypeD_subunitC Qui 26.3 2.5E+02 0.0054 25.7 6.6 72 38-116 19-94 (124)
388 PRK13603 fumarate reductase su 26.2 2.6E+02 0.0056 25.6 6.7 72 38-116 19-94 (126)
389 cd01571 NAPRTase_B Nicotinate 25.9 3.6E+02 0.0079 28.7 9.1 67 645-713 198-270 (302)
390 PF14979 TMEM52: Transmembrane 25.8 60 0.0013 30.3 2.7 19 51-69 21-39 (154)
391 PRK10060 RNase II stability mo 25.7 4.7E+02 0.01 31.2 11.1 112 618-733 537-660 (663)
392 MTH00145 CYTB cytochrome b; Pr 25.6 2.7E+02 0.006 30.7 8.3 90 17-106 41-135 (379)
393 cd04737 LOX_like_FMN L-Lactate 25.6 7E+02 0.015 27.3 11.3 70 643-715 230-304 (351)
394 PRK06895 putative anthranilate 25.5 1.9E+02 0.0041 28.3 6.6 31 613-643 2-32 (190)
395 COG0421 SpeE Spermidine syntha 25.5 3.6E+02 0.0078 28.5 8.8 69 614-682 102-181 (282)
396 PRK09016 quinolinate phosphori 25.2 4.2E+02 0.0092 28.2 9.3 68 638-714 211-278 (296)
397 PRK08745 ribulose-phosphate 3- 25.2 7.3E+02 0.016 25.2 11.3 101 630-731 104-219 (223)
398 PRK03372 ppnK inorganic polyph 24.9 7.4E+02 0.016 26.5 11.2 99 614-734 7-129 (306)
399 PRK02155 ppnK NAD(+)/NADH kina 24.8 7.6E+02 0.017 26.1 11.3 99 614-734 7-120 (291)
400 PRK14191 bifunctional 5,10-met 24.8 1.7E+02 0.0036 31.0 6.2 64 610-673 155-218 (285)
401 PLN02591 tryptophan synthase 24.7 6.9E+02 0.015 25.8 10.6 98 615-717 110-219 (250)
402 COG2200 Rtn c-di-GMP phosphodi 24.5 5.6E+02 0.012 26.4 10.1 106 620-729 134-251 (256)
403 PRK06774 para-aminobenzoate sy 24.5 1E+02 0.0023 30.2 4.5 47 615-661 2-49 (191)
404 TIGR01037 pyrD_sub1_fam dihydr 24.4 1.6E+02 0.0035 31.2 6.2 59 671-734 223-287 (300)
405 PLN02366 spermidine synthase 24.2 3.4E+02 0.0074 29.0 8.6 69 614-682 117-197 (308)
406 PRK00748 1-(5-phosphoribosyl)- 24.1 3.3E+02 0.0072 27.4 8.3 56 655-715 159-219 (233)
407 PRK02615 thiamine-phosphate py 24.1 3E+02 0.0064 30.1 8.1 86 641-732 246-343 (347)
408 COG4122 Predicted O-methyltran 24.1 2.2E+02 0.0048 28.8 6.7 54 614-667 86-144 (219)
409 TIGR02082 metH 5-methyltetrahy 24.0 8.6E+02 0.019 31.3 13.1 99 613-715 733-844 (1178)
410 COG0190 FolD 5,10-methylene-te 24.0 1.2E+02 0.0026 31.9 4.9 59 610-668 154-212 (283)
411 PLN02871 UDP-sulfoquinovose:DA 24.0 2.9E+02 0.0063 31.2 8.6 110 612-735 290-402 (465)
412 PF07536 HWE_HK: HWE histidine 23.9 2.7E+02 0.0059 23.4 6.2 70 351-432 2-71 (83)
413 TIGR00735 hisF imidazoleglycer 23.9 6.4E+02 0.014 25.9 10.4 58 665-728 183-247 (254)
414 PRK08007 para-aminobenzoate sy 23.9 1.1E+02 0.0023 30.2 4.3 48 615-662 2-50 (187)
415 PF04279 IspA: Intracellular s 23.8 4.8E+02 0.01 25.4 8.8 89 21-119 17-115 (176)
416 PRK01231 ppnK inorganic polyph 23.8 6.9E+02 0.015 26.5 10.7 99 614-734 6-119 (295)
417 PF10066 DUF2304: Uncharacteri 23.8 5.3E+02 0.011 23.0 12.7 28 39-66 19-47 (115)
418 TIGR01306 GMP_reduct_2 guanosi 23.6 9.5E+02 0.02 25.9 12.7 97 614-715 110-226 (321)
419 PRK04539 ppnK inorganic polyph 23.6 7.5E+02 0.016 26.3 10.9 99 614-734 7-125 (296)
420 PF13748 ABC_membrane_3: ABC t 23.4 2.6E+02 0.0055 28.7 6.9 49 118-166 162-212 (237)
421 PF12822 DUF3816: Protein of u 23.2 6.4E+02 0.014 23.8 10.3 35 45-79 93-127 (172)
422 PLN02935 Bifunctional NADH kin 23.2 7.7E+02 0.017 28.3 11.3 99 614-734 196-319 (508)
423 cd03115 SRP The signal recogni 23.1 5.2E+02 0.011 24.4 9.0 102 612-715 28-146 (173)
424 PRK02649 ppnK inorganic polyph 23.0 6.7E+02 0.015 26.8 10.5 88 625-734 19-125 (305)
425 PRK14178 bifunctional 5,10-met 22.9 1.6E+02 0.0035 31.0 5.6 58 610-667 150-207 (279)
426 PRK00771 signal recognition pa 22.9 1.1E+03 0.024 26.5 13.1 11 716-726 275-285 (437)
427 smart00786 SHR3_chaperone ER m 22.9 42 0.00092 33.0 1.2 32 57-88 6-38 (196)
428 COG2820 Udp Uridine phosphoryl 22.8 1.7E+02 0.0037 29.9 5.5 56 452-530 21-82 (248)
429 PRK04180 pyridoxal biosynthesi 22.4 2.2E+02 0.0048 30.1 6.3 110 614-732 121-255 (293)
430 TIGR02921 PEP_integral PEP-CTE 22.3 2.8E+02 0.006 32.2 7.4 30 29-59 158-187 (952)
431 COG4420 Predicted membrane pro 22.2 7.6E+02 0.017 24.3 11.9 9 79-87 85-93 (191)
432 cd00284 Cytochrome_b_N Cytochr 22.2 5E+02 0.011 25.9 8.7 91 17-107 32-129 (200)
433 COG4825 Uncharacterized membra 22.1 1.8E+02 0.004 30.4 5.6 55 609-663 177-234 (395)
434 CHL00200 trpA tryptophan synth 22.1 2.8E+02 0.006 29.0 7.2 60 669-733 78-143 (263)
435 PRK13143 hisH imidazole glycer 22.1 1.8E+02 0.0039 28.8 5.7 44 613-661 1-44 (200)
436 PF06703 SPC25: Microsomal sig 22.0 1.8E+02 0.0039 27.8 5.4 49 19-67 21-72 (162)
437 cd03813 GT1_like_3 This family 22.0 3.1E+02 0.0068 31.1 8.4 110 612-735 324-444 (475)
438 PF09858 DUF2085: Predicted me 22.0 3.2E+02 0.0069 23.6 6.3 62 25-99 23-86 (93)
439 TIGR00959 ffh signal recogniti 21.8 8.8E+02 0.019 27.3 11.5 12 716-727 282-293 (428)
440 PF04341 DUF485: Protein of un 21.7 3E+02 0.0064 23.6 6.1 49 25-73 22-75 (91)
441 KOG0355 DNA topoisomerase type 21.5 1.2E+02 0.0025 36.5 4.5 51 457-527 51-102 (842)
442 COG3952 Predicted membrane pro 21.3 1.5E+02 0.0033 26.0 4.1 37 19-59 25-64 (113)
443 PRK09722 allulose-6-phosphate 21.2 5.3E+02 0.011 26.3 8.8 101 629-731 101-219 (229)
444 COG0352 ThiE Thiamine monophos 21.0 4.5E+02 0.0098 26.5 8.1 67 641-713 110-183 (211)
445 PLN02274 inosine-5'-monophosph 21.0 2.9E+02 0.0064 31.8 7.7 59 651-715 256-316 (505)
446 KOG2335 tRNA-dihydrouridine sy 21.0 5.8E+02 0.013 27.8 9.3 86 613-715 146-232 (358)
447 PF00534 Glycos_transf_1: Glyc 20.9 3.7E+02 0.008 25.0 7.5 110 612-735 47-160 (172)
448 PF11143 DUF2919: Protein of u 20.8 5.9E+02 0.013 24.1 8.4 27 24-51 54-81 (149)
449 PF10966 DUF2768: Protein of u 20.8 2.2E+02 0.0049 22.3 4.5 33 27-59 6-39 (58)
450 PRK03522 rumB 23S rRNA methylu 20.7 5.9E+02 0.013 27.1 9.7 63 613-678 196-262 (315)
451 PRK09189 uroporphyrinogen-III 20.5 7.8E+02 0.017 24.8 10.2 96 625-730 12-114 (240)
452 PRK14176 bifunctional 5,10-met 20.4 1.8E+02 0.0038 30.8 5.3 60 610-669 162-221 (287)
453 PRK07259 dihydroorotate dehydr 20.4 1E+03 0.022 25.1 11.3 60 670-734 222-287 (301)
454 PRK07668 hypothetical protein; 20.3 2.4E+02 0.0051 29.3 6.1 39 53-92 141-179 (254)
455 PTZ00170 D-ribulose-5-phosphat 20.2 1.8E+02 0.0039 29.6 5.3 102 628-732 106-222 (228)
456 PRK06552 keto-hydroxyglutarate 20.2 5.7E+02 0.012 25.7 8.8 98 625-731 99-206 (213)
457 COG3967 DltE Short-chain dehyd 20.1 67 0.0015 32.2 2.0 23 545-568 12-34 (245)
458 PF10131 PTPS_related: 6-pyruv 20.1 7.6E+02 0.016 29.3 11.1 55 18-73 69-123 (616)
No 1
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=6.3e-57 Score=542.20 Aligned_cols=368 Identities=29% Similarity=0.490 Sum_probs=319.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeee
Q 004636 337 AETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGT 416 (740)
Q Consensus 337 ~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~ 416 (740)
++++++.+++|++++||||||||++|.|+++++.+...+++++++++.|..+++++..++++++++++++.+...+..++
T Consensus 276 l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~ 355 (779)
T PRK11091 276 LEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQP 355 (779)
T ss_pred HHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeec
Confidence 34445678899999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCC
Q 004636 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSR 496 (740)
Q Consensus 417 ~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~ 496 (740)
+++.++++++...+...+..+++.+.++.+++.|..+.+|+.++.||+.||++||+||+++|.|.+.+.....
T Consensus 356 ~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~------- 428 (779)
T PRK11091 356 IDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEG------- 428 (779)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccC-------
Confidence 9999999999999999999999999999888888778899999999999999999999999988887654311
Q ss_pred CCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccc-cccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCc
Q 004636 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ-AIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGK 575 (740)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~-~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~ 575 (740)
..+.|+|.|+|+|||++++++||+|||+++ ....+..+|+||||+|||++|+.|||+|+++|. +|+
T Consensus 429 ------------~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~ 495 (779)
T PRK11091 429 ------------DMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGK 495 (779)
T ss_pred ------------CEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCC
Confidence 148999999999999999999999999984 434445789999999999999999999999998 688
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-C
Q 004636 576 GCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-H 654 (740)
Q Consensus 576 G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~ 654 (740)
||+|++.+|++.+....... +........+.+||||||++.++..+..+|+..||.+..+.|+.+|++.+. .
T Consensus 496 Gt~f~i~lP~~~~~~~~~~~-------~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~ 568 (779)
T PRK11091 496 GSCFTLTIHAPAVAEEVEDA-------FDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD 568 (779)
T ss_pred eEEEEEEEeccccccccccc-------cccccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC
Confidence 99999999987654322111 011112235679999999999999999999999999999999999999885 5
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 655 EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 655 ~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
.||+||+|+.||+|||++++++||+... ....+|||++|++... ...+++++|+++|+.||++.++|...+++++..
T Consensus 569 ~~Dlvl~D~~mp~~~G~e~~~~ir~~~~-~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 569 EYDLVLLDIQLPDMTGLDIARELRERYP-REDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhccc-cCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 7899999999999999999999975421 1222578889988764 467899999999999999999999999998754
No 2
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-57 Score=502.04 Aligned_cols=471 Identities=23% Similarity=0.338 Sum_probs=378.0
Q ss_pred hhHHHHHHHhhHhHHHHhHhhhcCCCchHHHHHHHHHHHHHhhHHH-------HHHHHhc----ccchhHHHHHHHHHHH
Q 004636 24 SDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATH-------LINLWTF----NMHSRTVAIVMTTAKV 92 (740)
Q Consensus 24 sd~~i~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h-------~~~~~~~----~~~~~~~~~~~~~~k~ 92 (740)
.|.++++.|.++-..+..|+.+.-|..--.++++.|.++++-=++- ++++..| -.|-|.+ -+.-....
T Consensus 397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf-~v~d~~y~ 475 (890)
T COG2205 397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTF-AVSDPQYL 475 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEE-EEecCchH
Confidence 7899999999999999888888777777777777777765432211 2222221 1111111 01122367
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhc
Q 004636 93 LTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGR 172 (740)
Q Consensus 93 ~ta~~s~~ta~~l~~~~p~~~~~~~~~ll~~~~a~~l~~e~~~~~~~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~ 172 (740)
+|..||+++|+....| ++++++|++..++++++++.+|++++++..+.+.+.|++++..++.+
T Consensus 476 vTf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~ 538 (890)
T COG2205 476 VTFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIAS 538 (890)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7888888888776665 99999999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEecCCCCceEEEEEeeccCCCCcceecCCchhHHHHhhcCCceEecCCCccccccccccccCCCceEEEEe
Q 004636 173 TLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRV 252 (740)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (740)
+++.. |.+++|+.++.-..+.++.. ....+...++|++.++++++.++++.
T Consensus 539 ~~~~~-v~i~l~~~~~~~~~~~~~~~-------l~~~d~aaa~W~~~~~~~AG~gTdTl--------------------- 589 (890)
T COG2205 539 LLNQR-VVILLPDDNGKLQPLGNPDG-------LSADDRAAAQWAFENGKPAGAGTDTL--------------------- 589 (890)
T ss_pred HhCCc-eEEEEecCCcccccccCCcc-------ccHHHHHHhhchhhCCCccccCCCCC---------------------
Confidence 99988 77788876654322221111 12334568899999999999998872
Q ss_pred ceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 253 PLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDS 332 (740)
Q Consensus 253 p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~~~~~~l~~ 332 (740)
++.+..++| +...+...+++.+.........+++.+++.++++|+|.|+++..+.++..+
T Consensus 590 -----pg~~~~~lP-l~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~-------------- 649 (890)
T COG2205 590 -----PGAKYLYLP-LKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQ-------------- 649 (890)
T ss_pred -----CCCceeEee-cccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 223334555 555667888888888866668889999999999999999999999887432
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004636 333 ARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET--ELTPE-QRLMVETILKSSNLLATLINDVLDLSRLEDGS 409 (740)
Q Consensus 333 a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~--~l~~~-~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~ 409 (740)
++.++| ..+.|+.|++++||||||||++|+|.++.|... .++++ +.+.+..|.+++++|.++|+||||++|+++|.
T Consensus 650 a~l~~e-~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~ 728 (890)
T COG2205 650 ARLAAE-RERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGG 728 (890)
T ss_pred HHHHHH-HHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 222333 237889999999999999999999999998753 34554 77899999999999999999999999999999
Q ss_pred ceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEEec
Q 004636 410 LQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN-ISITGFVAK 488 (740)
Q Consensus 410 ~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~-i~i~~~~~~ 488 (740)
++++.+|..+.+++.+++..++.....+. +.++++.++|. +..|...++||+.||++||+||+|+|. |.|.+....
T Consensus 729 ~~l~~~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~l-i~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~ 805 (890)
T COG2205 729 VNLKLDWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLPL-IHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER 805 (890)
T ss_pred cccccchhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCce-EecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec
Confidence 99999999999999999998887766555 67777888775 457999999999999999999999875 888776543
Q ss_pred ccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEE
Q 004636 489 SESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWI 568 (740)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v 568 (740)
. .+.|+|.|+|+|||++++++||++||+..+.. ...|+||||||||.||++|||+|++
T Consensus 806 ~--------------------~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~--~~~G~GLGLsIc~~iv~ahgG~I~a 863 (890)
T COG2205 806 E--------------------NVVFSVIDEGPGIPEGELERIFDKFYRGNKES--ATRGVGLGLAICRGIVEAHGGTISA 863 (890)
T ss_pred c--------------------eEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC--CCCCccccHHHHHHHHHHcCCeEEE
Confidence 2 48999999999999999999999999988643 3789999999999999999999999
Q ss_pred EeecCCceEEEEEEEEeCCC
Q 004636 569 ESEGLGKGCTAIFIVKLGIP 588 (740)
Q Consensus 569 ~S~~~g~G~~~~~~l~l~~~ 588 (740)
++. .++|++|+|.+|....
T Consensus 864 ~~~-~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 864 ENN-PGGGAIFVFTLPVEED 882 (890)
T ss_pred EEc-CCCceEEEEEeecCCC
Confidence 997 6789999999988644
No 3
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.3e-55 Score=532.77 Aligned_cols=382 Identities=30% Similarity=0.490 Sum_probs=329.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004636 327 NIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLE 406 (740)
Q Consensus 327 ~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle 406 (740)
++++++++++++++++.|+.|++++||||||||++|.|++++|.....+++++++++.|.+++++|.++|+++++++|++
T Consensus 430 e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie 509 (924)
T PRK10841 430 EESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIE 509 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777778888899999999999999999999999999998888888899999999999999999999999999999
Q ss_pred CCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEE
Q 004636 407 DGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFV 486 (740)
Q Consensus 407 ~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~ 486 (740)
.+...++.++|++.+++++++..+.+.+..|++.+.+.++++.|..+.+|+.+|+||+.||++||+||++.|.|.+.+..
T Consensus 510 ~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~ 589 (924)
T PRK10841 510 SEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRV 589 (924)
T ss_pred CCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999998888888778899999999999999999999999988877654
Q ss_pred ecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEE
Q 004636 487 AKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHI 566 (740)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I 566 (740)
.. .++.|+|.|+|+||+++.++++|+|||+.+....+..+|+||||+|||++++.|||+|
T Consensus 590 ~~--------------------~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I 649 (924)
T PRK10841 590 DG--------------------DYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDI 649 (924)
T ss_pred eC--------------------CEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCEE
Confidence 21 2588999999999999999999999999876555667899999999999999999999
Q ss_pred EEEeecCCceEEEEEEEEeCCCCCCCCCCC--------------------------------------------------
Q 004636 567 WIESEGLGKGCTAIFIVKLGIPEHSNDSNL-------------------------------------------------- 596 (740)
Q Consensus 567 ~v~S~~~g~G~~~~~~l~l~~~~~~~~~~~-------------------------------------------------- 596 (740)
+++|. +|+|++|+|.+|+..+........
T Consensus 650 ~v~S~-~g~Gt~F~i~LP~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~d~~i~d~ 728 (924)
T PRK10841 650 SVDSE-PGMGSQFTIRIPLYGAQYPQKKGVEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQEPTPEDVLITDD 728 (924)
T ss_pred EEEEc-CCCcEEEEEEEECCcccccccccCcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEcccccCCcCcEEEEcC
Confidence 99998 689999999999753211000000
Q ss_pred ----c--------------ccC---------------------------------C----CCc--cCCCCCCCceEEeec
Q 004636 597 ----S--------------FIP---------------------------------K----MPV--HGQTNFPGLKVLVMD 619 (740)
Q Consensus 597 ----~--------------~~~---------------------------------~----~~~--~~~~~~~~~~ILIvd 619 (740)
. ..+ . .+. .......+.+|||||
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVd 808 (924)
T PRK10841 729 PVQKKWQGRAVITFCRRHIGIPLEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVD 808 (924)
T ss_pred ccccccchhhhhhhhhccccChhhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEEC
Confidence 0 000 0 000 000112457899999
Q ss_pred CchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCC
Q 004636 620 ENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTD 698 (740)
Q Consensus 620 D~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~ 698 (740)
|++.++..+..+|++.||.|..+.||.+|++.+. ..||+||+|++||+|||++++++||+. .+..|||++|++..
T Consensus 809 D~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~DlVl~D~~mP~mdG~el~~~ir~~----~~~~pII~lTa~~~ 884 (924)
T PRK10841 809 DHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDVNMPNMDGYRLTQRLRQL----GLTLPVIGVTANAL 884 (924)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCCCCEEEEECCCC
Confidence 9999999999999999999999999999999885 578999999999999999999999753 34567999999999
Q ss_pred HHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 699 NLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 699 ~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
.+...+|+++|+++|+.||++.++|...+.++...
T Consensus 885 ~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 885 AEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987654
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=5.2e-54 Score=529.38 Aligned_cols=373 Identities=32% Similarity=0.540 Sum_probs=328.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004636 330 LDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGS 409 (740)
Q Consensus 330 l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~ 409 (740)
.++++.+++++++.|.+|++++||||||||++|.|+++++.+...+++++++++.|.+++++|..+++++++++|++.+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~ 529 (968)
T TIGR02956 450 HAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGH 529 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556777888899999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred ceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecc
Q 004636 410 LQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKS 489 (740)
Q Consensus 410 ~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~ 489 (740)
..++.+++++.+++++++..+...+..+++.+.++++++.|..+.+|+.+++||+.||++||+||+++|.|.|.+.....
T Consensus 530 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~ 609 (968)
T TIGR02956 530 LSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD 609 (968)
T ss_pred CeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC
Confidence 99999999999999999999999999999999999988888888899999999999999999999999998887654321
Q ss_pred cccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 004636 490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIE 569 (740)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~ 569 (740)
..+.|+|.|+|+|||++++++||+||++.+. .+..+|+||||+|||++++.|||+|+++
T Consensus 610 -------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~~g~GLGL~i~~~l~~~~gG~i~~~ 668 (968)
T TIGR02956 610 -------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQADG--RRRSGGTGLGLAISQRLVEAMDGELGVE 668 (968)
T ss_pred -------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhccCC--CCCCCCccHHHHHHHHHHHHcCCEEEEE
Confidence 1278999999999999999999999999873 3456899999999999999999999999
Q ss_pred eecCCceEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHH
Q 004636 570 SEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECF 649 (740)
Q Consensus 570 S~~~g~G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal 649 (740)
|. +|+|++|+|.+|+...+...... .......++.+||||||++.++..+..+|+..||+|..+.||.+|+
T Consensus 669 s~-~~~Gt~f~~~lp~~~~~~~~~~~--------~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~ 739 (968)
T TIGR02956 669 SE-LGVGSCFWFTLPLTRGKPAEDSA--------TLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSAL 739 (968)
T ss_pred ec-CCCcEEEEEEEEcCCCCcccccc--------ccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHH
Confidence 98 68899999999986533221110 0011233556899999999999999999999999999999999999
Q ss_pred HHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHH
Q 004636 650 RVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLS 728 (740)
Q Consensus 650 ~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~ 728 (740)
+.+. ..||+||+|++||+|||++++++||+... ....+|||++|++...+...+|+++|+++|+.||++.++|...+.
T Consensus 740 ~~l~~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~-~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~ 818 (968)
T TIGR02956 740 ECFHQHAFDLALLDINLPDGDGVTLLQQLRAIYG-AKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIA 818 (968)
T ss_pred HHHHCCCCCEEEECCCCCCCCHHHHHHHHHhCcc-ccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 9884 57899999999999999999999976432 112278999999999999999999999999999999999999999
Q ss_pred HHHcc
Q 004636 729 DLLEH 733 (740)
Q Consensus 729 ~~l~~ 733 (740)
+++..
T Consensus 819 ~~~~~ 823 (968)
T TIGR02956 819 VILAG 823 (968)
T ss_pred HHhcc
Confidence 98743
No 5
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=2.6e-53 Score=520.52 Aligned_cols=395 Identities=32% Similarity=0.479 Sum_probs=338.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 322 LLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLD 401 (740)
Q Consensus 322 ~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd 401 (740)
++..++.+++.++++++++.+.|.+|++++||||||||++|.|+++++.+...+++++++++.|.++++++.++++++++
T Consensus 271 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 350 (919)
T PRK11107 271 QMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILD 350 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888899999999999999999999999999999988788889999999999999999999999999
Q ss_pred HHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEE
Q 004636 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNIS 481 (740)
Q Consensus 402 ~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~ 481 (740)
++|++.++..++..++++.+++++++..+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||+++|.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~ 430 (919)
T PRK11107 351 FSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNID 430 (919)
T ss_pred HHHHhcCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEE
Confidence 99999999999999999999999999999999999999999999888887788999999999999999999999999887
Q ss_pred EEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHH
Q 004636 482 ITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL 561 (740)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~ 561 (740)
+.+...... ++...+.|+|.|+|+|||+++++++|+|||+.+.+.+++.+|+||||+|||++++.
T Consensus 431 i~v~~~~~~---------------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~ 495 (919)
T PRK11107 431 ILVELRALS---------------NTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNE 495 (919)
T ss_pred EEEEEEecC---------------CCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHH
Confidence 766543221 12335899999999999999999999999998876667788999999999999999
Q ss_pred cCCEEEEEeecCCceEEEEEEEEeCCCCCCCCCCCc--------------------------------------------
Q 004636 562 MEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLS-------------------------------------------- 597 (740)
Q Consensus 562 ~gG~I~v~S~~~g~G~~~~~~l~l~~~~~~~~~~~~-------------------------------------------- 597 (740)
|||+|+++|. +|+|++|+|.+|+..+.........
T Consensus 496 ~gG~i~v~s~-~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~l~~ 574 (919)
T PRK11107 496 MGGDISFHSQ-PNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQLPE 574 (919)
T ss_pred hCCEEEEEec-CCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHHhcc
Confidence 9999999998 6889999999998644321100000
Q ss_pred ----------ccCC----------------------------------------------CC------------------
Q 004636 598 ----------FIPK----------------------------------------------MP------------------ 603 (740)
Q Consensus 598 ----------~~~~----------------------------------------------~~------------------ 603 (740)
..|. .|
T Consensus 575 ~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 654 (919)
T PRK11107 575 AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQ 654 (919)
T ss_pred CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccc
Confidence 0000 00
Q ss_pred ----ccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHH
Q 004636 604 ----VHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIH 678 (740)
Q Consensus 604 ----~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir 678 (740)
........+++|||||||+.++..++.+|+..|+.+..+.++.+|++.+. ..||+||+|+.||+|||+++++.||
T Consensus 655 ~~~~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~~dlil~D~~mp~~~g~~~~~~lr 734 (919)
T PRK11107 655 PPLLPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRPFDLILMDIQMPGMDGIRACELIR 734 (919)
T ss_pred cccccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 00001123468999999999999999999999999999999999999874 5789999999999999999999997
Q ss_pred HhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 679 DKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 679 ~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
+.. ..+..|||++|++.+.+...+|+++|+++|+.||++.++|...+++++...
T Consensus 735 ~~~--~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 735 QLP--HNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred hcc--cCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 542 234577999999999999999999999999999999999999999987653
No 6
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=1.3e-53 Score=523.17 Aligned_cols=385 Identities=30% Similarity=0.444 Sum_probs=330.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 323 LMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDL 402 (740)
Q Consensus 323 L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~ 402 (740)
+.++..++++++++++++++.+.+|++++||||||||++|.|+++++.+...+++++++++.+..++++|..++++++++
T Consensus 377 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~ 456 (921)
T PRK15347 377 VAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDF 456 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777788888888999999999999999999999999999988889999999999999999999999999999
Q ss_pred HhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEE
Q 004636 403 SRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISI 482 (740)
Q Consensus 403 srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i 482 (740)
+|++.+...++.+++++.++++++...+...+..+++.+.+.++++.|..+.+|+.+++||+.||++||+||+++|.|.+
T Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i 536 (921)
T PRK15347 457 SRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRL 536 (921)
T ss_pred HHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999888888888889999999999999999999999999888
Q ss_pred EEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHc
Q 004636 483 TGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLM 562 (740)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~ 562 (740)
.+.... ..+.|+|+|+|+||++++++++|+||++.+. +.+|+||||+|||++++.|
T Consensus 537 ~~~~~~--------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~i~~~~~~~~ 592 (921)
T PRK15347 537 RVKRHE--------------------QQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGLTIASSLAKMM 592 (921)
T ss_pred EEEEcC--------------------CEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHHHHHHHHHHHc
Confidence 764321 2589999999999999999999999998763 3579999999999999999
Q ss_pred CCEEEEEeecCCceEEEEEEEEeCCCCCCCCCCCc---------------------------------c-----------
Q 004636 563 EGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLS---------------------------------F----------- 598 (740)
Q Consensus 563 gG~I~v~S~~~g~G~~~~~~l~l~~~~~~~~~~~~---------------------------------~----------- 598 (740)
||+|+++|. +|+||+|+|.+|+............ .
T Consensus 593 gG~i~i~s~-~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (921)
T PRK15347 593 GGELTLFST-PGVGSCFSLVLPLNEYAPPEPLKGELSAPLALHRQLSAWGITCQPGHQNPALLDPELAYLPGRLYDLLQQ 671 (921)
T ss_pred CCEEEEEec-CCCceEEEEEEECCCCCCcccccccccchHHHHHHHHHcCCcccccccchhhcchhhhhcchHHHHHHHH
Confidence 999999998 6899999999998542211110000 0
Q ss_pred ----cCCCCcc-CCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHH
Q 004636 599 ----IPKMPVH-GQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYE 672 (740)
Q Consensus 599 ----~~~~~~~-~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e 672 (740)
.+..+.. .+....+++||||||++.++..+..+|+..||++..+.||.+|++.+. ..||+||+|+.||+|||++
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~mp~~~G~~ 751 (921)
T PRK15347 672 IIQGAPNEPVINLPLQPWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHRFDLVLMDIRMPGLDGLE 751 (921)
T ss_pred HhhcCCCcccccCCCCcccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHH
Confidence 0000000 001113468999999999999999999999999999999999999874 5789999999999999999
Q ss_pred HHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 673 ~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
++++||+......+.+|||++|++.+.+...+|+++|+++|+.||++.++|...+.++++
T Consensus 752 ~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 752 TTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred HHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 999997643223456789999999999999999999999999999999999999987653
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=8.3e-53 Score=515.53 Aligned_cols=376 Identities=27% Similarity=0.434 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (740)
Q Consensus 321 ~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lL 400 (740)
+++.+...++.+++.+.++..+++.+|++++||||||||++|.|+++++.+...+++++++++.|.++++++..++++++
T Consensus 421 ~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 500 (914)
T PRK11466 421 AELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDIL 500 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555667777788888899999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHhhhCCC--ceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC
Q 004636 401 DLSRLEDGS--LQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG 478 (740)
Q Consensus 401 d~srle~g~--~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g 478 (740)
++++++.+. ..++.+++++.+++++++..+...+..+++.+.++++++.|..+.+|+.+|+||+.||++||+||++.|
T Consensus 501 ~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g 580 (914)
T PRK11466 501 DYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEG 580 (914)
T ss_pred HHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999874 566778999999999999999999999999999998888887788999999999999999999999999
Q ss_pred eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHH
Q 004636 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (740)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~i 558 (740)
.|.+.+.... ..+.|.|.|+|+|||++.++++|+||++.+. ..+|+||||+|||++
T Consensus 581 ~I~i~~~~~~--------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~i~~~l 636 (914)
T PRK11466 581 SIVLRSRTDG--------------------EQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGLTISSRL 636 (914)
T ss_pred eEEEEEEEcC--------------------CEEEEEEEECCCCCCHHHHHHHhchhhcCCC----CCCCCcccHHHHHHH
Confidence 8887754321 1478999999999999999999999998653 357999999999999
Q ss_pred HHHcCCEEEEEeecCCceEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCe
Q 004636 559 VNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCD 638 (740)
Q Consensus 559 v~~~gG~I~v~S~~~g~G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~ 638 (740)
++.|||+|+++|. +|+|++|+|.+|+..+....... + .......+.+|||||||+.++..+..+|+..||+
T Consensus 637 ~~~~gG~i~v~s~-~~~Gt~f~i~lP~~~~~~~~~~~-------~-~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~ 707 (914)
T PRK11466 637 AQAMGGELSATST-PEVGSCFCLRLPLRVATAPVPKT-------V-NQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQ 707 (914)
T ss_pred HHHcCCEEEEEec-CCCCeEEEEEEEccccccccccc-------c-ccccccCCcceEEEeCCHHHHHHHHHHHHhcCCc
Confidence 9999999999998 68899999999986543221110 0 0112235679999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHC--CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEEC
Q 004636 639 VMTVSSVEECFRVVS--HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILK 716 (740)
Q Consensus 639 v~~a~~g~eal~~~~--~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~K 716 (740)
|..+.++.+|++.+. ..||+||+|++||+|||++++++||+. .+..|||++|++.......+++++|+++|+.|
T Consensus 708 v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~----~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~K 783 (914)
T PRK11466 708 VVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ----YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPK 783 (914)
T ss_pred eEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhh----CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeC
Confidence 999999999999773 468999999999999999999999752 35567899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcc
Q 004636 717 PVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 717 P~~~~~L~~~l~~~l~~ 733 (740)
|++.++|...+.++++.
T Consensus 784 P~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 784 PVPREVLGQLLAHYLQL 800 (914)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999998765
No 8
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=8.1e-50 Score=481.55 Aligned_cols=570 Identities=16% Similarity=0.203 Sum_probs=397.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHhhcccchh--HHHHH
Q 004636 88 TTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRH--TILKT 165 (740)
Q Consensus 88 ~~~k~~ta~~s~~ta~~l~~~~p~~~~~~~~~ll~~~~a~~l~~e~~~~~~~~~~~~~l~~lt~~i~~sld~~--~il~t 165 (740)
..++.+..+++++.++.++.+ +.++++..+.++++.+..+.++.++..+..+.+.+ +.+.+
T Consensus 238 ~~~Rl~l~~~~~~~~~~~~~l-----------------~~~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~~ 300 (828)
T PRK13837 238 RRVRLFLGAVSVALLGYIISL-----------------VLRLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIEA 300 (828)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344555555666555555544 55666666777777888888999999998876555 89999
Q ss_pred HHHhhhcccccceeEEEecCCCCceEEEEEeeccCCCCcceecCCchhHHHHhhcCCceEecCCCccccccccccccCCC
Q 004636 166 TLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPG 245 (740)
Q Consensus 166 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (740)
++..+...++.+.|++++.+.++.............. .. .......+..+................... ......+
T Consensus 301 ~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 376 (828)
T PRK13837 301 ALGILAKFFDADSAALALVDVGGRARIWTFPGLTPDP-VW-PDRLRALASTVKAAERDVVFVDRNGPVRKR--SCLTRRG 376 (828)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCeeeccCCccCCCC-Cc-hHHHHHHHHHHhccCCceEEeecccchhhh--cccccCC
Confidence 9999999999999998877766543332211000000 00 000001111111121111110000000000 0000111
Q ss_pred ceEEEEeceecccccccCCcccccccceeEEEEEeecC-CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 246 EVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD-SARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLM 324 (740)
Q Consensus 246 ~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~-~~r~~~~~~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~ 324 (740)
....+++|+ .......+++++... ....|...++.+++.++.+++.++++.+..++..+.+++
T Consensus 377 ~~~~~~~~~--------------~~~~~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~-- 440 (828)
T PRK13837 377 PALWACLAF--------------KSGDRIVALLGLGRQRYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERR-- 440 (828)
T ss_pred cceEEEEEe--------------ccCCceEEEEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 122222222 122333444444432 233455889999999999999998887765553332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 325 QQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-ELTPEQRLMVETILKSSNLLATLINDVLDLS 403 (740)
Q Consensus 325 ~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~-~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~s 403 (740)
+++ .+..+..++|++++||||||||++|.|+++++.+. ..+++.+++++.|.++++++..+++++++++
T Consensus 441 -----l~~-----~~rl~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~s 510 (828)
T PRK13837 441 -----LEH-----ARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFG 510 (828)
T ss_pred -----HHH-----HHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 12235667899999999999999999999988653 3455678899999999999999999999999
Q ss_pred hhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-CeEEE
Q 004636 404 RLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISI 482 (740)
Q Consensus 404 rle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~i~i 482 (740)
|...+ ..+++++.+++++++..++... .+++.+.++.++. +..+.+|+.++.||+.||++||+||+++ |.|.|
T Consensus 511 r~~~~----~~~~~~l~~ll~~~~~~~~~~~-~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I 584 (828)
T PRK13837 511 RKGER----NTKPFDLSELVTEIAPLLRVSL-PPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDI 584 (828)
T ss_pred CCCCC----CCcEEcHHHHHHHHHHHHHHHc-cCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEE
Confidence 96544 3468999999999999887543 4677777776554 3456789999999999999999999864 67777
Q ss_pred EEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHc
Q 004636 483 TGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLM 562 (740)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~ 562 (740)
.+......... ........++.++.|+|.|+|+|||++.++++|+|||+++. +|+||||+|||++++.|
T Consensus 585 ~~~~~~~~~~~-----~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv~~~ 653 (828)
T PRK13837 585 SLSRAKLRAPK-----VLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------GGTGLGLATVHGIVSAH 653 (828)
T ss_pred EEEEeeccccc-----ccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------CCCcchHHHHHHHHHHC
Confidence 66543211100 00000011244689999999999999999999999997642 79999999999999999
Q ss_pred CCEEEEEeecCCceEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEe
Q 004636 563 EGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTV 642 (740)
Q Consensus 563 gG~I~v~S~~~g~G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a 642 (740)
||+|+++|. +|+|++|++.+|...+........ + ...+.+...+.+|||||||+.++..+...|+..||+++.+
T Consensus 654 gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~~~~~~---~--~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~ 727 (828)
T PRK13837 654 AGYIDVQST-VGRGTRFDVYLPPSSKVPVAPQAF---F--GPGPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGF 727 (828)
T ss_pred CCEEEEEec-CCCeEEEEEEEeCCCCCCCCcccc---C--CCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEe
Confidence 999999998 688999999999764332211100 0 0011122346789999999999999999999999999999
Q ss_pred CCHHHHHHHHC-C--CCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCC
Q 004636 643 SSVEECFRVVS-H--EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVS 719 (740)
Q Consensus 643 ~~g~eal~~~~-~--~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~ 719 (740)
.++.++++.+. . .||+||+ .||+++|.++++.|+. ..+.+|||++|+........+++++| ++|+.||++
T Consensus 728 ~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~----~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~ 800 (828)
T PRK13837 728 STLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHA----AAPTLPIILGGNSKTMALSPDLLASV-AEILAKPIS 800 (828)
T ss_pred CCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHh----hCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCC
Confidence 99999999873 2 3799999 7999999999999964 24567899999999989999999999 999999999
Q ss_pred HHHHHHHHHHHHccc
Q 004636 720 LEKMRSVLSDLLEHR 734 (740)
Q Consensus 720 ~~~L~~~l~~~l~~~ 734 (740)
.++|...++++++..
T Consensus 801 ~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 801 SRTLAYALRTALATA 815 (828)
T ss_pred HHHHHHHHHHHHccc
Confidence 999999999988643
No 9
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-55 Score=514.10 Aligned_cols=728 Identities=39% Similarity=0.513 Sum_probs=583.5
Q ss_pred CCCCCCCC--CCCchhhhhHHhhhhhHHHHHHHhhHhHHHHhHhhhcCCCc-hHHHHHHHHHHHHHhhHHHHHHHHh-cc
Q 004636 2 ESCNCIEP--QWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFP-YRWVLVQFGAFIVLCGATHLINLWT-FN 77 (740)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~sd~~i~~~y~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~cg~~h~~~~~~-~~ 77 (740)
..|+|.+. .|........-++.||++|+.||||+|.+++||..+...+| |.|....|.+|+..||++|..+.|+ .-
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 109 (786)
T KOG0519|consen 30 DLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNGWTSYT 109 (786)
T ss_pred hhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchhhhcCC
Confidence 47999864 44444455788899999999999999999999999999885 9999999999999999999999999 54
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHH---HHHHHHHHhhhhhHHHhhHHHHHHHHHhh
Q 004636 78 MHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNK---AAELDREMGLIRTQEETGRHVRMLTHEIR 154 (740)
Q Consensus 78 ~~~~~~~~~~~~~k~~ta~~s~~ta~~l~~~~p~~~~~~~~~ll~~~~---a~~l~~e~~~~~~~~~~~~~l~~lt~~i~ 154 (740)
.+.-.++-..+..+..++.+++.||..++.++|+.+..|.++....+. ++++.++...+....+...+.++++.+++
T Consensus 110 ~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~~~~~~ 189 (786)
T KOG0519|consen 110 SHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRMLTHEIR 189 (786)
T ss_pred ccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeeeeeehh
Confidence 445556666677899999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccC----CCCcceecCCchhHHHHhhcCCceEecCCC
Q 004636 155 STLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ----NPVGYTVPIQLPVINQVFSSNHAVKISPNC 230 (740)
Q Consensus 155 ~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (740)
++++++.+++++..++.+.+..+.|+.|+|..........|+.+.. .....+.+..+.....++...+.......+
T Consensus 190 ~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s 269 (786)
T KOG0519|consen 190 AALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSAKSLLS 269 (786)
T ss_pred hhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhccccch
Confidence 9999999999999999999999999999999866555666666544 222345556677777777766655544444
Q ss_pred cccccccc-ccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHHHHHHHHHH-
Q 004636 231 PVARLRPL-AGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALS- 308 (740)
Q Consensus 231 ~~~~~~~~-~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a~q~a~al~- 308 (740)
........ ......++..+.++++..+.++....+++.....++..++.++.+.++.|...+.++.+.+++++..++.
T Consensus 270 ~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~ 349 (786)
T KOG0519|consen 270 LLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKF 349 (786)
T ss_pred hHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecc
Confidence 33333322 2245567889999999999999888899999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHH-HhcCCCCHHHHHHHHHHH
Q 004636 309 -HAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSL-LQETELTPEQRLMVETIL 386 (740)
Q Consensus 309 -~a~l~~e~~~~~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~l-L~~~~l~~~~~~~l~~i~ 386 (740)
++..+++....++.+..++..+..++++...+...+..++..++|..|+|.+.+.+.... +++..+.+++.-.++...
T Consensus 350 t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~ 429 (786)
T KOG0519|consen 350 THAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVM 429 (786)
T ss_pred cccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhh
Confidence 888888888888888888888999999988888999999999999999999999998874 455556666666778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHH
Q 004636 387 KSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLN 466 (740)
Q Consensus 387 ~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~N 466 (740)
+....+..+++.-.+.++...|.-......+.+..++...+....+....+...+...+..+.|..+.+|..++.|++.+
T Consensus 430 ~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (786)
T KOG0519|consen 430 RSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILD 509 (786)
T ss_pred hhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhh
Confidence 88889999999999999987777666777899999999999999988878888888888888888888899999999999
Q ss_pred HHHHHhh--cCCCCe-EEEEEEEecccccc----cCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhccccccc
Q 004636 467 VVGNAVK--FTKEGN-ISITGFVAKSESLR----DSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQA 539 (740)
Q Consensus 467 Ll~NAik--~t~~g~-i~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~ 539 (740)
..+++.+ ++..|+ ..+.+......... ....+-+..........+.+.+.+++.|....+.+..|..|.+...
T Consensus 510 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 589 (786)
T KOG0519|consen 510 FNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD 589 (786)
T ss_pred hcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhcccc
Confidence 9999999 887663 12222211110000 0001111111122223678999999999999999988888877665
Q ss_pred ccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeCCCCC--CCCCCCcccCCCCcc--CCCCCCCceE
Q 004636 540 IALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEH--SNDSNLSFIPKMPVH--GQTNFPGLKV 615 (740)
Q Consensus 540 ~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~I 615 (740)
...+...+.+++++.|.+..+.++|.+++.....|........+....... ...+.....+..+.. ......|.+|
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~i 669 (786)
T KOG0519|consen 590 LTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKI 669 (786)
T ss_pred chhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCce
Confidence 444335788999999999999999999987432232111000000000000 000111111111111 1223568899
Q ss_pred EeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC--CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEE
Q 004636 616 LVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS--HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVAL 693 (740)
Q Consensus 616 LIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~--~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~l 693 (740)
|+||||+.++++...+|+++|+++..+.||.||++.+. ..||+||||++||.|||+|++++||+... .++||||+
T Consensus 670 Llvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~---~~~pIvAl 746 (786)
T KOG0519|consen 670 LLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKER---WHLPIVAL 746 (786)
T ss_pred EEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhhc---CCCCEEEE
Confidence 99999999999999999999999999999999999997 57899999999999999999999987654 67889999
Q ss_pred ecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 694 TGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
||+.+++..++|++.|||+|++|||+.+.|...+++++.
T Consensus 747 Ta~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 747 TADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred ecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998864
No 10
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=2.7e-49 Score=497.03 Aligned_cols=376 Identities=28% Similarity=0.450 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004636 330 LDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQ-RLMVETILKSSNLLATLINDVLDLSRLEDG 408 (740)
Q Consensus 330 l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~-~~~l~~i~~~~~~l~~lI~~lLd~srle~g 408 (740)
+++++++++++.+++++|++++||||||||++|.|+++++.+...++++ .++++.+..+++++..+++++++++|++++
T Consensus 698 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~ 777 (1197)
T PRK09959 698 LEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESG 777 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344445555667889999999999999999999999999766555544 568889999999999999999999999999
Q ss_pred CceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEec
Q 004636 409 SLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAK 488 (740)
Q Consensus 409 ~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~ 488 (740)
...+..+++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.||+.||++||+||+++|.+.+.+....
T Consensus 778 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~ 857 (1197)
T PRK09959 778 NYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGH 857 (1197)
T ss_pred CceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEee
Confidence 99999999999999999999999999999988877654333345678999999999999999999999887776654321
Q ss_pred ccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEE
Q 004636 489 SESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWI 568 (740)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v 568 (740)
.. .+...+.|+|.|+|+|||++.+++||+||++++.. +..+|+||||+|||++++.|||+|++
T Consensus 858 ~~---------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~--~~~~G~GLGL~i~~~iv~~~gG~i~v 920 (1197)
T PRK09959 858 ID---------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG--RQQTGSGLGLMICKELIKNMQGDLSL 920 (1197)
T ss_pred ec---------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccC--CCCCCcCchHHHHHHHHHHcCCEEEE
Confidence 11 12335889999999999999999999999987642 34579999999999999999999999
Q ss_pred EeecCCceEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHH
Q 004636 569 ESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEEC 648 (740)
Q Consensus 569 ~S~~~g~G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~ea 648 (740)
+|. +|+|++|++.+|+........... .... +.....+.+||||||++.++..+..+|+..|+++..+.++.+|
T Consensus 921 ~s~-~~~Gt~f~i~lP~~~~~~~~~~~~--~~~~---~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a 994 (1197)
T PRK09959 921 ESH-PGIGTTFTITIPVEISQQVATVEA--KAEQ---PITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQA 994 (1197)
T ss_pred EeC-CCCcEEEEEEEEccccchhccccc--cccc---ccccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHH
Confidence 998 688999999999865432111100 0000 1111235689999999999999999999999999999999999
Q ss_pred HHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHH
Q 004636 649 FRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVL 727 (740)
Q Consensus 649 l~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l 727 (740)
++.+. ..||+||+|+.||+|||++++++||+. .+..|||++|++.+.....+++++|+++|+.||++.++|...+
T Consensus 995 l~~~~~~~~dlil~D~~mp~~~g~~~~~~i~~~----~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l 1070 (1197)
T PRK09959 995 LHKVSMQHYDLLITDVNMPNMDGFELTRKLREQ----NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHL 1070 (1197)
T ss_pred HHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHH
Confidence 99885 578999999999999999999999742 3456799999999999999999999999999999999999999
Q ss_pred HHHHc
Q 004636 728 SDLLE 732 (740)
Q Consensus 728 ~~~l~ 732 (740)
+++..
T Consensus 1071 ~~~~~ 1075 (1197)
T PRK09959 1071 SQLHQ 1075 (1197)
T ss_pred HHHhh
Confidence 87654
No 11
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=1.1e-46 Score=448.92 Aligned_cols=307 Identities=23% Similarity=0.330 Sum_probs=266.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004636 325 QQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSR 404 (740)
Q Consensus 325 ~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr 404 (740)
..+++++++++++++++++|++|++++||||||||++|.|+++++.+...+++++++++.|.++++++.++++++++++|
T Consensus 431 ~~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsr 510 (894)
T PRK10618 431 LVNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNM 510 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888889999999999999999999999999999999999987777888899999999999999999999999999
Q ss_pred hhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 004636 405 LEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITG 484 (740)
Q Consensus 405 le~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~ 484 (740)
+++|+..++.+++++.+++++++..+.+.+..+++.+.++.+.+.+..+.+|+.+++||+.||++||+||++.|.|.+.+
T Consensus 511 le~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v 590 (894)
T PRK10618 511 LETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEV 590 (894)
T ss_pred hhcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 99999999999999999999999999999999999998888766666788999999999999999999999999988876
Q ss_pred EEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCC
Q 004636 485 FVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEG 564 (740)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG 564 (740)
..... ....+.|+|.|+|+|||++.+++||+||++.+.. .+..+|+||||+|||+||+.|||
T Consensus 591 ~~~~~-----------------~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG 652 (894)
T PRK10618 591 DQDES-----------------SPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGG 652 (894)
T ss_pred EEccC-----------------CCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCC
Confidence 54321 1135899999999999999999999999987643 34467999999999999999999
Q ss_pred EEEEEeecCCceEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCC
Q 004636 565 HIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSS 644 (740)
Q Consensus 565 ~I~v~S~~~g~G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~ 644 (740)
+|+++|. +|+||+|++.+|+..+...... .......+.+||||||++.++..+..+|+++||+|..+.+
T Consensus 653 ~I~v~S~-~g~GT~F~I~LPl~~~~~~~~~----------~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~ 721 (894)
T PRK10618 653 HLTIKSR-EGLGTRYSIHLKMLAADPEVEE----------EEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDE 721 (894)
T ss_pred EEEEEEC-CCCcEEEEEEEEccCCcccccc----------cccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 9999998 6899999999998543221100 0122346789999999999999999999999999999887
Q ss_pred HHHHHHHHCCCCeEEEEecCC
Q 004636 645 VEECFRVVSHEHQVVFMDVCV 665 (740)
Q Consensus 645 g~eal~~~~~~~dlvl~D~~m 665 (740)
+. ....||+||+|.++
T Consensus 722 ~~-----~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 722 RL-----ISQEYDIFLTDNPS 737 (894)
T ss_pred cc-----cCCCCCEEEECCCC
Confidence 42 24579999999984
No 12
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=1.7e-42 Score=417.13 Aligned_cols=473 Identities=23% Similarity=0.317 Sum_probs=338.6
Q ss_pred hhhHHHHHHHhhHhHHHHhHhhhcCCCchHHHHHHHHHHHHH--hhH-----HHHHHHHhcccchhHHHH---HHHHHHH
Q 004636 23 ISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVL--CGA-----THLINLWTFNMHSRTVAI---VMTTAKV 92 (740)
Q Consensus 23 ~sd~~i~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--cg~-----~h~~~~~~~~~~~~~~~~---~~~~~k~ 92 (740)
..|.+.+++..+.-..+.+++...=+.+.-.+++++++++++ +|. +=++++..||+=--+.+| +......
T Consensus 399 ~~~~~~a~~~~~~~t~l~~~l~~~l~~~ni~mlyll~Vll~A~~~G~~pai~aavls~l~~nfFF~~P~~Tf~v~~~~~~ 478 (895)
T PRK10490 399 IQGCLVAIALCALITLIAMQWLPAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVASFDLFFVAPRGTLAVSDVQYL 478 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHheeCCCceEEEEcCcccH
Confidence 457788888777776666655443223344444444432221 111 113333333221001111 1112256
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhc
Q 004636 93 LTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGR 172 (740)
Q Consensus 93 ~ta~~s~~ta~~l~~~~p~~~~~~~~~ll~~~~a~~l~~e~~~~~~~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~ 172 (740)
+|.++++++|++...+ +.+++++.+..++++++.+.|++++++++.+.+.+++++++...+.+
T Consensus 479 ~t~~v~l~va~v~~~l-----------------~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~~ 541 (895)
T PRK10490 479 LTFAVMLTVGLVIGNL-----------------TAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLAS 541 (895)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 6777777777766654 78888999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEecCCCCceEEEEEeeccCCCCcceecCCchhHHHHhhcCCceEecCCCccccccccccccCCCceEEEEe
Q 004636 173 TLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRV 252 (740)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (740)
.++.. |++|+++.++........ . + ..+.+.....|.+.++.+.+.++++. + ......+
T Consensus 542 ~~~~~-~~l~l~~~~g~~~~~~~~----~--~-~~~~~~~~~~w~~~~~~~~g~~~~tl------------~-~~~~~~l 600 (895)
T PRK10490 542 TFQAR-SQLLLPDDNGKLQPLTHD----Q--G-MTPWDDAIARWSFDKGQPAGAGTDTL------------P-GVPYQIL 600 (895)
T ss_pred hhCCC-EEEEEEcCCCcccccccc----c--c-ccchHHHHHHHHHhcCCccccCcCcC------------C-CCceEEE
Confidence 99965 678888765532111100 0 0 12234456778888877765544321 1 1111223
Q ss_pred ceecccccccCCcccccccceeEEEEEeecCC-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 253 PLLHLSNFQINDWPELSTKRYALMVLMLPSDS-ARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALD 331 (740)
Q Consensus 253 p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~-~r~~~~~~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~~~~~~l~ 331 (740)
| +......+|++++.... .+.|.+++.++++.++.|++.++++..+.++..+
T Consensus 601 P--------------l~~~~~~~Gvl~l~~~~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~------------- 653 (895)
T PRK10490 601 P--------------LKSAQKTYGLLAVEPGNLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQ------------- 653 (895)
T ss_pred E--------------EEECCEEEEEEEEecCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3 23345567787776654 3567889999999999999999987765433111
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004636 332 SARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETE--LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGS 409 (740)
Q Consensus 332 ~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~--l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~ 409 (740)
++ ..++..+.+++|++.+||||||||++|.|+++++.... ...+..+.++.+.+++.++.++++++++++|++.+.
T Consensus 654 -~~-l~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~ 731 (895)
T PRK10490 654 -AR-LASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGG 731 (895)
T ss_pred -HH-HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 11 11222356788999999999999999999999886432 223344678889999999999999999999999999
Q ss_pred ceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEec
Q 004636 410 LQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAK 488 (740)
Q Consensus 410 ~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g-~i~i~~~~~~ 488 (740)
..++.+++++.+++++++..+......+++ .++++++.+ .+.+|+.++.||+.||++||+||+++| .|.+......
T Consensus 732 ~~l~~~~~~L~eli~~~l~~l~~~~~~~~i--~l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~ 808 (895)
T PRK10490 732 FNLRKEWLTLEEVVGSALQMLEPGLSGHPI--NLSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEG 808 (895)
T ss_pred CcccccccCHHHHHHHHHHHHHHHhcCCCE--EEEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeC
Confidence 999999999999999999999887766664 455555554 466899999999999999999999865 5666544221
Q ss_pred ccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEE
Q 004636 489 SESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWI 568 (740)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v 568 (740)
..+.|+|.|+|+|||++.++++|+|||+++.. +..+|+||||+|||++++.|||+|++
T Consensus 809 --------------------~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLGL~Ivk~ive~hGG~I~v 866 (895)
T PRK10490 809 --------------------ERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLGLAICRAIVEVHGGTIWA 866 (895)
T ss_pred --------------------CEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHHHHHHHHHHHHcCCEEEE
Confidence 24889999999999999999999999987642 34579999999999999999999999
Q ss_pred EeecCCceEEEEEEEEeCCC
Q 004636 569 ESEGLGKGCTAIFIVKLGIP 588 (740)
Q Consensus 569 ~S~~~g~G~~~~~~l~l~~~ 588 (740)
+|. +|+|++|++.+|+..+
T Consensus 867 ~s~-~~~Gt~f~i~LPl~~~ 885 (895)
T PRK10490 867 ENR-PEGGACFRVTLPLETP 885 (895)
T ss_pred EEC-CCCeEEEEEEeECCCC
Confidence 998 5789999999998643
No 13
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-42 Score=350.40 Aligned_cols=228 Identities=28% Similarity=0.479 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeee
Q 004636 340 AIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPE--QRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTF 417 (740)
Q Consensus 340 ~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~--~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~ 417 (740)
..+.|.+|.+++||||||||+++.++.+.|.++...+. ...++..-.++.+||.+||+|||.+||+++...+++.+++
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 33567789999999999999999999999998766444 5678888999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEecccccccCC
Q 004636 418 NLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDSR 496 (740)
Q Consensus 418 ~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g-~i~i~~~~~~~~~~~~~~ 496 (740)
|+...+.+++..+......+.....+..-|.-+.++..|++++.||+.|+++||+||+|+| .|++.....
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~--------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR--------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee---------
Confidence 9999999999999877555443312222355567788899999999999999999999975 577765432
Q ss_pred CCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCce
Q 004636 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (740)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G 576 (740)
+..+.++|+|.|.|||.+++++||++|||.+..++++.+||||||||+|.||++|||.||++|. .|+|
T Consensus 372 -----------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gkg 439 (459)
T COG5002 372 -----------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGKG 439 (459)
T ss_pred -----------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCCc
Confidence 1258999999999999999999999999999988899999999999999999999999999998 7999
Q ss_pred EEEEEEEEeCCC
Q 004636 577 CTAIFIVKLGIP 588 (740)
Q Consensus 577 ~~~~~~l~l~~~ 588 (740)
++|+|++|....
T Consensus 440 tt~~ftLPy~~~ 451 (459)
T COG5002 440 TTFSFTLPYSGE 451 (459)
T ss_pred eEEEEEecccCc
Confidence 999999998643
No 14
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=2.3e-38 Score=365.05 Aligned_cols=367 Identities=20% Similarity=0.290 Sum_probs=285.0
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeee
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETE-----LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGT 416 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~-----l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~ 416 (740)
+...++++.++||+||||+.|.++.+++.+.. ......+.++.+.+.++++..++++++++++.. ......
T Consensus 161 ~~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~ 236 (540)
T PRK13557 161 EALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRV 236 (540)
T ss_pred HHhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcc
Confidence 34567899999999999999999999885321 234556788999999999999999999998854 234567
Q ss_pred ecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEecccccccC
Q 004636 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDS 495 (740)
Q Consensus 417 ~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g-~i~i~~~~~~~~~~~~~ 495 (740)
+++.+++..+...+... ..+++.+.+..++..+. +.+|+.++.|++.||+.||+||++.| .+.+......... .
T Consensus 237 ~~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~---~ 311 (540)
T PRK13557 237 LNLNGLVSGMGELAERT-LGDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIED---E 311 (540)
T ss_pred cCHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCc---c
Confidence 89999999887766543 34667777766665554 45699999999999999999998754 4555433211100 0
Q ss_pred CCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCc
Q 004636 496 RAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGK 575 (740)
Q Consensus 496 ~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~ 575 (740)
....+ .....+..+.|+|.|+|+|||++.++++|+|||+++. ..+|+||||+|||++++.|||+|+++|. +|+
T Consensus 312 ~~~~~--~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~----~~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~ 384 (540)
T PRK13557 312 DLAMY--HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE----EGKGTGLGLSMVYGFAKQSGGAVRIYSE-VGE 384 (540)
T ss_pred ccccc--cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----CCCCCCccHHHHHHHHHHCCCEEEEEec-CCC
Confidence 00000 0011234588999999999999999999999998753 3579999999999999999999999998 688
Q ss_pred eEEEEEEEEeCCCCCCCCCCCcccCCCCccCCCCCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-C
Q 004636 576 GCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQTNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-H 654 (740)
Q Consensus 576 G~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~ 654 (740)
|++|++.+|.........+ .+ +........+.+|||+||++..+..+..+|+..||.+..+.++.++++.+. .
T Consensus 385 G~~f~i~lP~~~~~~~~~~----~~--~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~ 458 (540)
T PRK13557 385 GTTVRLYFPASDQAENPEQ----EP--KARAIDRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH 458 (540)
T ss_pred ceEEEEEeeCCCCccCCCC----CC--CCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC
Confidence 9999999887533221111 01 111112234568999999999999999999999999999999999999874 3
Q ss_pred -CCeEEEEecCCCC-CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 655 -EHQVVFMDVCVPG-IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 655 -~~dlvl~D~~mp~-~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
.||+|++|..||+ ++|+++++.|++. .+.+|||++|..........++..|+++|+.||++.++|...+++++.
T Consensus 459 ~~~d~vi~d~~~~~~~~~~~~~~~l~~~----~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 459 PEVDLLFTDLIMPGGMNGVMLAREARRR----QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred CCceEEEEeccCCCCCCHHHHHHHHHHh----CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 5899999999997 9999999999753 345678889998888888888999999999999999999999999876
Q ss_pred cc
Q 004636 733 HR 734 (740)
Q Consensus 733 ~~ 734 (740)
.+
T Consensus 535 ~~ 536 (540)
T PRK13557 535 GP 536 (540)
T ss_pred CC
Confidence 54
No 15
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=1.7e-36 Score=334.30 Aligned_cols=235 Identities=24% Similarity=0.441 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 329 ALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELT-------PEQRLMVETILKSSNLLATLINDVLD 401 (740)
Q Consensus 329 ~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~-------~~~~~~l~~i~~~~~~l~~lI~~lLd 401 (740)
.++++++++++..+.+++|++++||||||||++|.++++++.+...+ +..+++++.+.++++++.++++++++
T Consensus 136 ~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~ 215 (380)
T PRK09303 136 VLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLE 215 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666778899999999999999999999999999754322 23567889999999999999999999
Q ss_pred HHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-CeE
Q 004636 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNI 480 (740)
Q Consensus 402 ~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~i 480 (740)
+++.+.+...++.+++|+.+++.+++..+...+..+++.+.++++.+.|. +.+|+.++.||+.||++||+||++. |.|
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~d~~~l~qvl~NLl~NAik~~~~~~~I 294 (380)
T PRK09303 216 VGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPS-VYADQERIRQVLLNLLDNAIKYTPEGGTI 294 (380)
T ss_pred HHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCe-EEeCHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 99999999989999999999999999999999999999999988777664 5789999999999999999999986 466
Q ss_pred EEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHH
Q 004636 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~ 560 (740)
.+.+.... ...+.|+|.|+|+|||++.+++||+|||+.+. .++.+|+||||+|||++++
T Consensus 295 ~i~~~~~~-------------------~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 295 TLSMLHRT-------------------TQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred EEEEEecC-------------------CCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHH
Confidence 66543211 12588999999999999999999999999875 3456899999999999999
Q ss_pred HcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 561 LMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 561 ~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
.|||+|+++|. +|+|++|+|++|..
T Consensus 354 ~~gG~i~v~s~-~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 354 VHYGQIWVDSE-PGQGSCFHFTLPVY 378 (380)
T ss_pred HcCCEEEEEec-CCCccEEEEEEecC
Confidence 99999999998 58899999999863
No 16
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=305.28 Aligned_cols=261 Identities=29% Similarity=0.458 Sum_probs=207.6
Q ss_pred cccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHH
Q 004636 285 ARQWHVHELELVEVVADQVA-VALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAII 363 (740)
Q Consensus 285 ~r~~~~~~~~ll~~~a~q~a-~al~~a~l~~e~~~~~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~ 363 (740)
...|++.|++....+-.-+. +.+.++ ++ +.+.++++++++...+.|...+|||||+||+.|.
T Consensus 481 s~PWs~~ei~~A~~LR~aiv~ivl~~a----------ee-------la~l~r~lersn~el~~f~yv~sHdlqePl~~I~ 543 (750)
T COG4251 481 SQPWSEVEIEAALELRKAIVGIVLRHA----------EE-------LAQLRRELERSNAELRAFAYVASHDLQEPLRQIS 543 (750)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH----------HH-------HHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHH
Confidence 45688888777665544321 222222 22 3344455556666667899999999999999999
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeE
Q 004636 364 ALSSLLQET---ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLL 440 (740)
Q Consensus 364 g~~~lL~~~---~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~ 440 (740)
+++++|.+. .++.+.++++..+.+.+.+|.++|++++.++++.....++ ++.|+.+++.+++..+.......++.
T Consensus 544 ~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l--~~td~~~vv~~vl~~l~~ri~dtgae 621 (750)
T COG4251 544 NYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPL--QPTDVQKVVDKVLLELSQRIADTGAE 621 (750)
T ss_pred HHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC--CCcchHHHHHHHHHhcccccccccce
Confidence 999999754 5788899999999999999999999999999997655554 58899999999999999988888865
Q ss_pred EEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCC
Q 004636 441 VALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGS 520 (740)
Q Consensus 441 l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~ 520 (740)
+. +.+ +|. +.+|+.++.||+.||+.||+||..++.-.|.+.....+ ..+.+.|.|+|+
T Consensus 622 i~--i~~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~e------------------d~~t~sV~dng~ 679 (750)
T COG4251 622 IR--IAP-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQE------------------DEWTFSVRDNGI 679 (750)
T ss_pred EE--ecc-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceEEeeeccC------------------CceEEEecCCCC
Confidence 55 445 665 56899999999999999999998765323333222211 137899999999
Q ss_pred CCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeCCCC
Q 004636 521 GISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE 589 (740)
Q Consensus 521 GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~~~~ 589 (740)
||+++..++||..|.+.... ..+.|+|+||+|||+|++.|+|+||++|. +|.|+||.|++|...+.
T Consensus 680 Gi~~a~~~riF~iFqRl~s~--~~y~gtG~GL~I~kkI~e~H~G~i~vEs~-~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 680 GIDPAYFERIFVIFQRLHSR--DEYLGTGLGLAICKKIAERHQGRIWVEST-PGEGSTFYFTLPVGGEE 745 (750)
T ss_pred CcCHHHHHHHHHHHHhcCch--hhhcCCCccHHHHHHHHHHhCceEEEeec-CCCceeEEEEeecCCcC
Confidence 99999999999999988643 46789999999999999999999999998 69999999999986543
No 17
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=4.9e-32 Score=320.57 Aligned_cols=388 Identities=18% Similarity=0.202 Sum_probs=263.4
Q ss_pred HHHHHHHHHHhhhhhHHHh--hHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCC
Q 004636 124 NKAAELDREMGLIRTQEET--GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN 201 (740)
Q Consensus 124 ~~a~~l~~e~~~~~~~~~~--~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (740)
.+.+++++.+.....+++. -.....+++.+.++.|.+++++.++..+.+.++.+..++|+.+.++.............
T Consensus 283 ~lr~~l~~~~~k~~~~~~~dyr~~~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~ 362 (679)
T TIGR02916 283 TLRARLRVFISKHFFRYKYDYREEWLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPL 362 (679)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCC
Confidence 3466677766543322221 12246799999999999999999999999999999999999887765444432221111
Q ss_pred CCcceecCCchhHHHHhhcCCceEecCCCccccc-cc--cccccCCCceEEEEeceecccccccCCcccccccceeEEEE
Q 004636 202 PVGYTVPIQLPVINQVFSSNHAVKISPNCPVARL-RP--LAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVL 278 (740)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl 278 (740)
.....+.+.+..++...++.............. .. ............+++|+ ...+...|++
T Consensus 363 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vPL--------------~~~~~~~G~l 427 (679)
T TIGR02916 363 -AQAFEPSDSAFCQFLQESGWIINLEEARSEPDHYSGLVLPEWLREIPNAWLIVPL--------------ISGEELVGFV 427 (679)
T ss_pred -cccCCCCCCHHHHHHHhCCCcccchhhcCCcccccccccchhhhcCCCceEEEEe--------------ccCCEEEEEE
Confidence 111233334444443333322222111100000 00 00000000111233343 2334456666
Q ss_pred EeecC-CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 004636 279 MLPSD-SARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRT 357 (740)
Q Consensus 279 ~l~~~-~~r~~~~~~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRt 357 (740)
++..+ ..+.++.++.++++.++.|++.++++.+..++..+ + +..+..+++.+.++|||||
T Consensus 428 ~l~~~~~~~~~~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~--------------~-----~~~~~~~~~~a~i~HdLrn 488 (679)
T TIGR02916 428 VLARPRTAGEFNWEVRDLLKTAGRQAASYLAQMEASEALAE--------------A-----RQFEAFNRMSAFVVHDLKN 488 (679)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-----HHHHHHHHHHHHHHHHhcc
Confidence 66654 45678999999999999999999987665544211 1 1123456788999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhh
Q 004636 358 PMHAIIALSSLLQETELTPE-QRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASV 436 (740)
Q Consensus 358 PL~~I~g~~~lL~~~~l~~~-~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~ 436 (740)
|++.+....+...+...+++ ..++++.+.++.+++.++++++.+.. ...+.+++++.++++++.+..+.. .
T Consensus 489 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ll~~~~~~~~~~--~ 560 (679)
T TIGR02916 489 LVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVDLLRRAIASKRAQ--G 560 (679)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHHHHHHHHHHhhhh--c
Confidence 99999888777665444444 45678889999999999988875433 245567899999999998876542 2
Q ss_pred cCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEE
Q 004636 437 KKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQV 515 (740)
Q Consensus 437 k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V 515 (740)
.. +.++++++ ..+.+|+..+.||+.||++||+||+++ |.|.|.+.... ..+.|+|
T Consensus 561 ~~--~~l~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~--------------------~~~~i~V 616 (679)
T TIGR02916 561 PR--PEVSIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVEREC--------------------GAARIEI 616 (679)
T ss_pred CC--ceEEeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcC--------------------CEEEEEE
Confidence 33 34444443 346789999999999999999999874 57777654321 2478999
Q ss_pred EecCCCCCcCC-hhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEE
Q 004636 516 KDSGSGISPQD-IPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK 584 (740)
Q Consensus 516 ~D~G~GI~~e~-l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~ 584 (740)
+|||+|||++. .+++|+||++++ .+|+|+||++||++++.|||+|+++|. +|+|++|++.+|
T Consensus 617 ~D~G~Gi~~~~i~~~lF~pf~~~~------~~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 679 (679)
T TIGR02916 617 EDSGCGMSPAFIRERLFKPFDTTK------GAGMGIGVYECRQYVEEIGGRIEVEST-PGQGTIFTLVLP 679 (679)
T ss_pred EEcCCCcChHHHHHhcCCCCCCCC------CCCcchhHHHHHHHHHHcCCEEEEEec-CCCceEEEEEeC
Confidence 99999999999 999999999765 279999999999999999999999998 688999998875
No 18
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=7.7e-33 Score=310.74 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=185.8
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHH
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETEL-TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~ 421 (740)
.+.+|++++||||||||++|.|+++++.+... ++..+++++.|.++++++..+++++++++|++.+......+.+++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45679999999999999999999999976543 45567789999999999999999999999999887766677899999
Q ss_pred HHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEecccccccCCCCCC
Q 004636 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDSRAPEF 500 (740)
Q Consensus 422 li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g-~i~i~~~~~~~~~~~~~~~~~~ 500 (740)
+++.+...+.... .+++.+.++.+++. .+.+|+.++.|++.||++||+||+++| .|.+.....
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------- 346 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------- 346 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-------------
Confidence 9988877776554 56677777776554 467899999999999999999999865 566654321
Q ss_pred cCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEE
Q 004636 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (740)
Q Consensus 501 ~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~ 580 (740)
...+.|+|.|+|+|||++.++++|+|||+.+...+++.+|+||||+|||++++.|||+|+++|. +|+|++|+
T Consensus 347 -------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~-~~~Gt~f~ 418 (430)
T PRK11006 347 -------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE-VGKGTRFS 418 (430)
T ss_pred -------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEec-CCCceEEE
Confidence 1147899999999999999999999999987665566789999999999999999999999998 68899999
Q ss_pred EEEEeC
Q 004636 581 FIVKLG 586 (740)
Q Consensus 581 ~~l~l~ 586 (740)
+.+|..
T Consensus 419 i~lP~~ 424 (430)
T PRK11006 419 FVLPER 424 (430)
T ss_pred EEechH
Confidence 998764
No 19
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=6.8e-32 Score=303.13 Aligned_cols=236 Identities=19% Similarity=0.314 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 322 LLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLD 401 (740)
Q Consensus 322 ~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd 401 (740)
++.+....++++..+.++..+.+++|++++||||||||+.|.+..+++.+. ++++.+ .+.+..+++..++++++.
T Consensus 190 el~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~~---~i~~~~~~l~~li~~ll~ 264 (433)
T PRK10604 190 SLERLGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAESQ---ALNRDIGQLEALIEELLT 264 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345556667777777788888889999999999999999999998888632 222222 377888999999999999
Q ss_pred HHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEE
Q 004636 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNIS 481 (740)
Q Consensus 402 ~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~ 481 (740)
++|++.+......+++++.+++++++..++.....+++.+.+. .+ +..+.+|+..+.+++.||++||+||++ |.|.
T Consensus 265 ~~rl~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~--~~-~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~ 340 (433)
T PRK10604 265 YARLDRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTP--HQ-GDYGALDMRLMERVLDNLLNNALRYAH-SRVR 340 (433)
T ss_pred HHhccCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEec--CC-CceEecCHHHHHHHHHHHHHHHHHhCC-CeEE
Confidence 9999999888888999999999999999988777776555443 22 234557999999999999999999985 6677
Q ss_pred EEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHH
Q 004636 482 ITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL 561 (740)
Q Consensus 482 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~ 561 (740)
|++....+ .+.|+|.|+|+|||+++++++|+|||+.+.+..++.+|+||||+|||++++.
T Consensus 341 I~~~~~~~--------------------~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~ 400 (433)
T PRK10604 341 VSLLLDGN--------------------QACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALA 400 (433)
T ss_pred EEEEEECC--------------------EEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHH
Confidence 76543321 4789999999999999999999999998876666678999999999999999
Q ss_pred cCCEEEEEeecCCceEEEEEEEEeCC
Q 004636 562 MEGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 562 ~gG~I~v~S~~~g~G~~~~~~l~l~~ 587 (740)
|||+|+++|. +|+|++|++.+|...
T Consensus 401 ~gG~i~v~s~-~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 401 MGGSVNCDES-ELGGARFSFSWPVWH 425 (433)
T ss_pred CCCEEEEEec-CCCeeEEEEEEeCCC
Confidence 9999999998 688999999998764
No 20
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-32 Score=271.38 Aligned_cols=222 Identities=23% Similarity=0.378 Sum_probs=183.6
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHH
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~ 421 (740)
++-+.+.++++|||||||.+|.|.+++|+..-.++..++|.+.|.++++|+.+|++.+.-++- +-+.+..++|+++
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 455678999999999999999999999998776777899999999999999999999966653 3345566899999
Q ss_pred HHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCC---C--CeEEEEEEEecccccccCC
Q 004636 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK---E--GNISITGFVAKSESLRDSR 496 (740)
Q Consensus 422 li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~---~--g~i~i~~~~~~~~~~~~~~ 496 (740)
+++.+....+..+. +++.+.-+.+|++|.+ .+|+++|.|++.||+.||+.+.. . |.|+++.+.....+..+
T Consensus 206 VLerV~~lv~~e~~-~~i~l~rdYDPSLP~v-~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g-- 281 (363)
T COG3852 206 VLERVRALVEAEFA-DNVRLIRDYDPSLPEV-LGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAG-- 281 (363)
T ss_pred HHHHHHHHHhcccC-CceEEeecCCCCCccc-cCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccC--
Confidence 99999988876654 6788888999999985 58999999999999999999854 2 77877654322211111
Q ss_pred CCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCce
Q 004636 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (740)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G 576 (740)
......+.++|.|||+|||++-++++|.||.+++ .+||||||+|+++++..|||.|+++|. +| .
T Consensus 282 --------~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r------~~GsGLGLala~~li~qH~G~Ie~~S~-Pg-~ 345 (363)
T COG3852 282 --------TRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGR------EGGTGLGLALAQNLIDQHGGKIEFDSW-PG-R 345 (363)
T ss_pred --------ceeEeeeeeEEecCCCCCChHHhhhccccccccC------CCCccccHHHHHHHHHhcCCEEEEecc-CC-c
Confidence 1122357889999999999999999999998875 589999999999999999999999998 45 7
Q ss_pred EEEEEEEEeCC
Q 004636 577 CTAIFIVKLGI 587 (740)
Q Consensus 577 ~~~~~~l~l~~ 587 (740)
|+|++.+|...
T Consensus 346 T~FrvllP~~~ 356 (363)
T COG3852 346 TVFRVLLPIRK 356 (363)
T ss_pred eEEEEEeeccc
Confidence 88998888754
No 21
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.98 E-value=6.8e-31 Score=298.73 Aligned_cols=216 Identities=23% Similarity=0.302 Sum_probs=166.4
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHH
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~ 421 (740)
+...++++.++||+||||++|.++++++.+...+.......+.+.+...++.+.++.+.++.. ........++|+.+
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~dl~~ 350 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP---QSPQEIVVPVNLNQ 350 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcccccccccHHH
Confidence 445678888999999999999999999875433222223333333333444444444444332 22334457899999
Q ss_pred HHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-----eEEEEEEEecccccccCC
Q 004636 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-----NISITGFVAKSESLRDSR 496 (740)
Q Consensus 422 li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g-----~i~i~~~~~~~~~~~~~~ 496 (740)
++++++..+...+..+++.+.++.++.+|. +.+|+.+++||+.||++||+||++.+ .|.+....
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~---------- 419 (494)
T TIGR02938 351 ILRDVITLSTPRLLAAGIVVDWQPAATLPA-ILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTAL---------- 419 (494)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEecCCCCCe-eecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEe----------
Confidence 999999999988888999998888777764 56899999999999999999998765 23333221
Q ss_pred CCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCce
Q 004636 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (740)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G 576 (740)
.+..+.|+|+|||+|||++.+++||+|||+++.. ..+|+||||+|||+||+.|||+|+++|. +|+|
T Consensus 420 ----------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~~~G~GlGL~i~~~iv~~~gG~i~~~s~-~~~G 485 (494)
T TIGR02938 420 ----------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---SRKHIGMGLSVAQEIVADHGGIIDLDDD-YSEG 485 (494)
T ss_pred ----------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---CCCCCcccHHHHHHHHHHcCCEEEEEEC-CCCC
Confidence 1125889999999999999999999999998753 2689999999999999999999999998 6889
Q ss_pred EEEEEEEEe
Q 004636 577 CTAIFIVKL 585 (740)
Q Consensus 577 ~~~~~~l~l 585 (740)
|+|++++|+
T Consensus 486 ~~f~i~lp~ 494 (494)
T TIGR02938 486 CRIIVEFRV 494 (494)
T ss_pred EEEEEEecC
Confidence 999999885
No 22
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.98 E-value=1.5e-30 Score=295.33 Aligned_cols=235 Identities=18% Similarity=0.273 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 322 LLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDVL 400 (740)
Q Consensus 322 ~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~l~~lI~~lL 400 (740)
++......+++..++.++..+..++|++++||||||||++|.+..+.+.+.. .+.++ ....+.+...++.+++++++
T Consensus 244 El~~L~~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~~--~~~~~~~~i~ri~~~i~~ll 321 (485)
T PRK10815 244 ELTSLVRNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVEQ--AEPIMLEQISRISQQIGYYL 321 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555566667788999999999999999999999887654 33332 33557788899999999999
Q ss_pred HHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeE
Q 004636 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480 (740)
Q Consensus 401 d~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i 480 (740)
+.++.+.+...+..+.+++.+++++++..+...+..+++.+.++++++. .+.+|+..+.+|+.||++||+||+++ .+
T Consensus 322 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i 398 (485)
T PRK10815 322 HRASMRSEHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FV 398 (485)
T ss_pred HHHHhhcCCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cE
Confidence 9999999888888889999999999999999988999988888776543 45689999999999999999999975 34
Q ss_pred EEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHH
Q 004636 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~ 560 (740)
.|.+... +..+.|+|+|+|+|||++.++++|+||++.+. ..+|+||||+|||++++
T Consensus 399 ~I~~~~~--------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~----~~~G~GLGL~Ivk~iv~ 454 (485)
T PRK10815 399 EISARQT--------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADT----LRPGQGLGLSVAREITE 454 (485)
T ss_pred EEEEEEe--------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCC----CCCCcchhHHHHHHHHH
Confidence 4543321 12478999999999999999999999998753 24699999999999999
Q ss_pred HcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 561 LMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 561 ~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
.|||+|+++|. +++|++|++.+|..
T Consensus 455 ~~gG~i~v~s~-~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 455 QYEGKISAGDS-PLGGARMEVIFGRQ 479 (485)
T ss_pred HcCCEEEEEEC-CCCEEEEEEEEcCC
Confidence 99999999998 57799999988764
No 23
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.98 E-value=2.9e-30 Score=280.25 Aligned_cols=213 Identities=25% Similarity=0.393 Sum_probs=183.1
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecH
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSS---LLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~---lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l 419 (740)
...++.+++||||++||++|.++++ +|.+....++.++.+..|..-.+||..+.+.|-.|+|..... .+++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 4467899999999999999998776 455677788889999999999999999999999999976544 468999
Q ss_pred HHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecccccccCC
Q 004636 420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSR 496 (740)
Q Consensus 420 ~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~---~g~i~i~~~~~~~~~~~~~~ 496 (740)
.+.|++++..+.......+..+..+.++ .|.+|.+|+.||+||+.|||.||+++.. ++.|.|.....
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~--------- 528 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE--------- 528 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec---------
Confidence 9999999999999998888777776644 3567889999999999999999999964 45676665432
Q ss_pred CCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCce
Q 004636 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (740)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G 576 (740)
+..+.|+|+||||||+++.++++|+|||++|.. .+|.||||+||+.|++.+||+|.+.+. +++|
T Consensus 529 -----------~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~----~~GLGLGLaIS~~i~~d~GGsL~v~n~-~~~G 592 (603)
T COG4191 529 -----------GGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPV----GKGLGLGLAISQNIARDLGGSLEVANH-PEGG 592 (603)
T ss_pred -----------CCeEEEEEccCCCCCCHHHHHhhcCCccccCcc----cCCcchhHHHHHHHHHHhCCeEEeecC-CCCc
Confidence 224899999999999999999999999999853 689999999999999999999999986 5679
Q ss_pred EEEEEEEEe
Q 004636 577 CTAIFIVKL 585 (740)
Q Consensus 577 ~~~~~~l~l 585 (740)
+.|++.++.
T Consensus 593 a~F~i~L~~ 601 (603)
T COG4191 593 ASFTIELRR 601 (603)
T ss_pred eEEEEEeec
Confidence 999888763
No 24
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=7.6e-30 Score=289.19 Aligned_cols=244 Identities=25% Similarity=0.363 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (740)
Q Consensus 321 ~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lL 400 (740)
+++.+....+++...++++..+.+.+|++.+|||+||||+.+.+..+.+++... +...+.+..+...++++.+++++++
T Consensus 217 dE~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~ 295 (466)
T PRK10549 217 DELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLH 295 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777787777888999999999999999999999999876432 2234457788889999999999999
Q ss_pred HHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-Ce
Q 004636 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GN 479 (740)
Q Consensus 401 d~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~ 479 (740)
++++.+.+...+..+++++.+++++++..++.....+++.+.++.++.. .+.+|+..+.|++.||++||+||+++ |.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~ 373 (466)
T PRK10549 296 QLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGS 373 (466)
T ss_pred HHHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999999999999999999999999999999988888888888776543 35589999999999999999999875 56
Q ss_pred EEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHH
Q 004636 480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV 559 (740)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv 559 (740)
|.+.+.... ..+.|.|.|+|+|||+++++++|+|||+++....+..+|+||||+||++++
T Consensus 374 I~i~~~~~~--------------------~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~ 433 (466)
T PRK10549 374 LHISAEQRD--------------------KTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIV 433 (466)
T ss_pred EEEEEEEcC--------------------CEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHH
Confidence 666653321 248899999999999999999999999987655556789999999999999
Q ss_pred HHcCCEEEEEeecCCceEEEEEEEEeCCC
Q 004636 560 NLMEGHIWIESEGLGKGCTAIFIVKLGIP 588 (740)
Q Consensus 560 ~~~gG~I~v~S~~~g~G~~~~~~l~l~~~ 588 (740)
+.|||+++++|. .|+|++|++.+|+..+
T Consensus 434 ~~~~G~l~~~s~-~~~G~~~~i~lP~~~~ 461 (466)
T PRK10549 434 EAHNGRIIAAHS-PFGGVSITVELPLERD 461 (466)
T ss_pred HHcCCEEEEEEC-CCCeEEEEEEccCCCC
Confidence 999999999998 5789999999887543
No 25
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=1.5e-29 Score=298.52 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 320 RDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDV 399 (740)
Q Consensus 320 ~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~l 399 (740)
.+++.+..+.++++..++++..+..++|.+.+|||+||||+.|.+..+.+.....+++..++++.+.++++++..+++++
T Consensus 461 ~DEIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l 540 (703)
T TIGR03785 461 RDEIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNM 540 (703)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777888888888888889999999999999999999999999877777788889999999999999999999
Q ss_pred HHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-
Q 004636 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG- 478 (740)
Q Consensus 400 Ld~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g- 478 (740)
++++|++.+....+.+++|+.+++++++..++.....+++.+.+. .+ +..+.+|+..|.|++.||++||+||++++
T Consensus 541 ~~~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~ 617 (703)
T TIGR03785 541 SEATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ET-PLVMRGSPELIAQMLDKLVDNAREFSPEDG 617 (703)
T ss_pred HHHHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CC-CeEEEECHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999988777788899999999999999998887777655543 32 23567899999999999999999999754
Q ss_pred eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHH
Q 004636 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (740)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~i 558 (740)
.|.|.+... +..+.|+|.|+|+||+++.++++|+|||+.+.......+|+||||+|||++
T Consensus 618 ~I~I~~~~~--------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~I 677 (703)
T TIGR03785 618 LIEVGLSQN--------------------KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLI 677 (703)
T ss_pred eEEEEEEEc--------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHH
Confidence 566654322 124789999999999999999999999987754444456899999999999
Q ss_pred HHHcCCEEEEEeecCCceEEEEEEEE
Q 004636 559 VNLMEGHIWIESEGLGKGCTAIFIVK 584 (740)
Q Consensus 559 v~~~gG~I~v~S~~~g~G~~~~~~l~ 584 (740)
++.|||+|+++|.+.|+|++|++.+|
T Consensus 678 v~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 678 ADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 99999999999985557999888775
No 26
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=1.9e-29 Score=276.03 Aligned_cols=215 Identities=22% Similarity=0.291 Sum_probs=173.3
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecH-H
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL-H 420 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l-~ 420 (740)
+.+++|.+++||||||||++|.+..+++.+... ++ .+.+.+..+++..+++++++++|.+.........++++ .
T Consensus 135 ~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~ 209 (356)
T PRK10755 135 DQERLFTADVAHELRTPLAGIRLHLELLEKQHH-ID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLE 209 (356)
T ss_pred HHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-hh----HHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHH
Confidence 344579999999999999999999998865422 12 33455667889999999999999877666666678888 9
Q ss_pred HHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEecccccccCCCCC
Q 004636 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDSRAPE 499 (740)
Q Consensus 421 ~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g-~i~i~~~~~~~~~~~~~~~~~ 499 (740)
+++..+...+......+++.+.++..+ .+..+.+|+..+.+++.||++||+||+++| .|.+.+...
T Consensus 210 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~------------ 276 (356)
T PRK10755 210 DVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE------------ 276 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc------------
Confidence 999999888988888888777664222 234567899999999999999999999754 576665321
Q ss_pred CcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEE
Q 004636 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (740)
Q Consensus 500 ~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~ 579 (740)
+..+.|+|+|+|+||++++++++|++|++.+. +.+|+||||+||+++++.|||+|+++|.+.++|++|
T Consensus 277 --------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~ 344 (356)
T PRK10755 277 --------DGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRA 344 (356)
T ss_pred --------CCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEE
Confidence 12478999999999999999999999998653 357999999999999999999999999843389999
Q ss_pred EEEEEeC
Q 004636 580 IFIVKLG 586 (740)
Q Consensus 580 ~~~l~l~ 586 (740)
++.+|..
T Consensus 345 ~i~~p~~ 351 (356)
T PRK10755 345 WVWLPKA 351 (356)
T ss_pred EEEecCC
Confidence 8888753
No 27
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=1.3e-28 Score=278.76 Aligned_cols=213 Identities=27% Similarity=0.450 Sum_probs=182.1
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHH
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~ 420 (740)
...++|.+.+|||+||||++|.++++++.+.. ..++.++.++.+.++++++.+++++++++++.. .....++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 45567999999999999999999999987543 345667788999999999999999999999843 3455689999
Q ss_pred HHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecccccccCCCCC
Q 004636 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPE 499 (740)
Q Consensus 421 ~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~i~i~~~~~~~~~~~~~~~~~ 499 (740)
+++++++..+...+..+++.+.++.++..+. +.+|+.++.|++.||++||+||+++ +.|.+.+....
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~----------- 378 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLPE-IQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESG----------- 378 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCce-EEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeC-----------
Confidence 9999999999999999999999888765553 4579999999999999999999764 56776654321
Q ss_pred CcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEE
Q 004636 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (740)
Q Consensus 500 ~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~ 579 (740)
..+.|+|.|+|+|||++.++++|++||+++ .+|+||||+|||++++.|||+++++|. +|+|++|
T Consensus 379 ---------~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k------~~g~GlGL~iv~~~v~~~gG~i~i~s~-~~~Gt~f 442 (457)
T PRK10364 379 ---------AGVKISVTDSGKGIAADQLEAIFTPYFTTK------AEGTGLGLAVVHNIVEQHGGTIQVASQ-EGKGATF 442 (457)
T ss_pred ---------CeEEEEEEECCCCCCHHHHHHHhCccccCC------CCCCcccHHHHHHHHHHCCCEEEEEeC-CCCcEEE
Confidence 138899999999999999999999999764 468999999999999999999999998 5889999
Q ss_pred EEEEEeC
Q 004636 580 IFIVKLG 586 (740)
Q Consensus 580 ~~~l~l~ 586 (740)
++.+|..
T Consensus 443 ~i~lP~~ 449 (457)
T PRK10364 443 TLWLPVN 449 (457)
T ss_pred EEEecCC
Confidence 9998875
No 28
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=1.1e-28 Score=281.00 Aligned_cols=240 Identities=22% Similarity=0.369 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETEL-TPEQRLMVETILKSSNLLATLINDV 399 (740)
Q Consensus 321 ~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~l~~lI~~l 399 (740)
+++.+....++++..+.++..+.+.+|++.+|||||||++.+.+.++.+..... ..+..+.+..+..+..++..+++++
T Consensus 239 dEl~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~l 318 (482)
T PRK09835 239 IELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDM 318 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888888888888888999999999999999999998887754433 3445567778888899999999999
Q ss_pred HHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-
Q 004636 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG- 478 (740)
Q Consensus 400 Ld~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g- 478 (740)
+++++.+.+...+...++++.++++++...+...+..+++.+.+.. + +..+.+|+..+.+++.||++||+||+++|
T Consensus 319 l~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~ 395 (482)
T PRK09835 319 LFLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--D-PCQVAGDPLMLRRAISNLLSNALRYTPAGE 395 (482)
T ss_pred HHHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--C-CcEEEECHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999888888888999999999999999988888887776543 2 34567899999999999999999999765
Q ss_pred eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHH
Q 004636 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (740)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~i 558 (740)
.|.|.+.... ..+.|+|.|+|+|||++.++++|+|||+.+....+..+|+||||+|||++
T Consensus 396 ~I~i~~~~~~--------------------~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i 455 (482)
T PRK09835 396 AITVRCQEVD--------------------HQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSI 455 (482)
T ss_pred eEEEEEEEeC--------------------CEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHH
Confidence 4766654321 13789999999999999999999999998765555567999999999999
Q ss_pred HHHcCCEEEEEeecCCceEEEEEEEEe
Q 004636 559 VNLMEGHIWIESEGLGKGCTAIFIVKL 585 (740)
Q Consensus 559 v~~~gG~I~v~S~~~g~G~~~~~~l~l 585 (740)
++.|||+|+++|. ++|++|++.+|.
T Consensus 456 ~~~~~g~i~~~s~--~~g~~~~i~lP~ 480 (482)
T PRK09835 456 VVAHKGTVAVTSD--ARGTRFVISLPR 480 (482)
T ss_pred HHHCCCEEEEEEC--CCcEEEEEEeeC
Confidence 9999999999997 358998888874
No 29
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=1.5e-28 Score=277.47 Aligned_cols=238 Identities=24% Similarity=0.380 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDV 399 (740)
Q Consensus 321 ~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~-l~~~~~~~l~~i~~~~~~l~~lI~~l 399 (740)
+++.+....++++..++++..+...++.+.+|||+||||+++.+.++.+.... ..++..+.++.+.+..+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788888888888888889999999999999999999998875443 33455678888889999999999999
Q ss_pred HHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-C
Q 004636 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-G 478 (740)
Q Consensus 400 Ld~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g 478 (740)
+++++.+........+++++.++++++++.+...+..+++.+.++ .+ ..+.+|+..+.+++.||++||+||+++ |
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 999999998888888999999999999999998888888666554 32 346789999999999999999999976 5
Q ss_pred eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHH
Q 004636 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (740)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~i 558 (740)
.|.|...... ..+.|+|.|+|+|||++.++++|++||+++.......+|+||||+||+++
T Consensus 374 ~I~i~~~~~~--------------------~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~ 433 (457)
T TIGR01386 374 TITVRIERRS--------------------DEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSI 433 (457)
T ss_pred eEEEEEEecC--------------------CEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHH
Confidence 6776654321 24789999999999999999999999998876555678999999999999
Q ss_pred HHHcCCEEEEEeecCCceEEEEEEEE
Q 004636 559 VNLMEGHIWIESEGLGKGCTAIFIVK 584 (740)
Q Consensus 559 v~~~gG~I~v~S~~~g~G~~~~~~l~ 584 (740)
++.|||++++++ +|+|++|++.+|
T Consensus 434 ~~~~~G~~~~~~--~~~G~~~~~~~P 457 (457)
T TIGR01386 434 MEAHGGRASAES--PDGKTRFILRFP 457 (457)
T ss_pred HHHCCCEEEEEe--CCCceEEEEecC
Confidence 999999999999 367999888765
No 30
>PRK10337 sensor protein QseC; Provisional
Probab=99.97 E-value=2.4e-28 Score=275.68 Aligned_cols=233 Identities=20% Similarity=0.316 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004636 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPE-QRLMVETILKSSNLLATLINDV 399 (740)
Q Consensus 321 ~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~-~~~~l~~i~~~~~~l~~lI~~l 399 (740)
+++.+....+++...+.++..+..++|++.++||||||++.+.+.++.+.....+++ ..++++.+...++++.++++++
T Consensus 214 ~Ei~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l 293 (449)
T PRK10337 214 SEVRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQL 293 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777889999999999999999998888765444444 4568889999999999999999
Q ss_pred HHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-
Q 004636 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG- 478 (740)
Q Consensus 400 Ld~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g- 478 (740)
+.++|++.+......+++++.+++++++..+...+..+++.+.++.++. +..+.+|+..+.+++.||++||+||+++|
T Consensus 294 l~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~ 372 (449)
T PRK10337 294 LTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGS 372 (449)
T ss_pred HHHHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9999998876666778999999999999999988888998888877543 33456899999999999999999999864
Q ss_pred eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHH
Q 004636 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRF 558 (740)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~i 558 (740)
.|.+.... ..++|+|+|+|||+++++++|+|||+.+. ++.+|+||||+||+++
T Consensus 373 ~i~i~~~~------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~iv~~i 425 (449)
T PRK10337 373 VVDVTLNA------------------------RNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLSIVRRI 425 (449)
T ss_pred eEEEEEEe------------------------eEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHHHHHHH
Confidence 55554321 25899999999999999999999998653 2457999999999999
Q ss_pred HHHcCCEEEEEeecCCceEEEEEE
Q 004636 559 VNLMEGHIWIESEGLGKGCTAIFI 582 (740)
Q Consensus 559 v~~~gG~I~v~S~~~g~G~~~~~~ 582 (740)
++.|||+|+++|. +++|++|++.
T Consensus 426 ~~~~gg~l~~~s~-~~~G~~~~i~ 448 (449)
T PRK10337 426 AKLHGMNVSFGNA-PEGGFEAKVS 448 (449)
T ss_pred HHHcCCEEEEEec-CCCeEEEEEe
Confidence 9999999999998 5778887764
No 31
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.96 E-value=4.9e-28 Score=273.87 Aligned_cols=240 Identities=25% Similarity=0.346 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 320 RDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDV 399 (740)
Q Consensus 320 ~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~l 399 (740)
.+++.+....+++...++++....+.+|++.+||||||||+.+.+..+++......+ ..+..+...++++..+++++
T Consensus 219 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l 295 (461)
T PRK09470 219 PQEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDL 295 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHH
Confidence 356677777788888888888888899999999999999999999888876543222 24567888999999999999
Q ss_pred HHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCe
Q 004636 400 LDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN 479 (740)
Q Consensus 400 Ld~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~ 479 (740)
++++|.+... .+..+.+++.++++++++.+......+++.+.++..++ +..+.+|+..+.+++.||++||+||++ +.
T Consensus 296 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~ 372 (461)
T PRK09470 296 LVLSRNQQKN-HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TK 372 (461)
T ss_pred HHHHHhhccc-ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-Cc
Confidence 9999987643 56777899999999999988877777887777764333 345678999999999999999999986 45
Q ss_pred EEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHH
Q 004636 480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV 559 (740)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv 559 (740)
+.+.+.... ..+.|+|.|+|+||+++.++++|+|||+.+....+..+|+||||+||++++
T Consensus 373 i~i~~~~~~--------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v 432 (461)
T PRK09470 373 IEVAFSVDK--------------------DGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAI 432 (461)
T ss_pred EEEEEEEEC--------------------CEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHH
Confidence 666544321 147899999999999999999999999987655556789999999999999
Q ss_pred HHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 560 NLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 560 ~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
+.|||+++++|. +++|++|++.+|+.
T Consensus 433 ~~~~G~l~~~s~-~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 433 QQHRGWVKAEDS-PLGGLRLTIWLPLY 458 (461)
T ss_pred HHCCCEEEEEEC-CCCeEEEEEEeeCC
Confidence 999999999998 57799999988864
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=2.9e-28 Score=262.47 Aligned_cols=218 Identities=31% Similarity=0.474 Sum_probs=186.1
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHH
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQET--ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~~--~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~ 420 (740)
.+.+|.+.++||+||||++|.++.+.+... ..+++..++++.|.+.++++..++++++++++++.+......+++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345699999999999999999999988654 345566778999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecccccccCCCCC
Q 004636 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPE 499 (740)
Q Consensus 421 ~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~i~i~~~~~~~~~~~~~~~~~ 499 (740)
+++..+...+......+++.+.+..++ +..+.+|+..+.+++.||+.||+||++. +.|.+......
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~----------- 259 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDG----------- 259 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcC-----------
Confidence 999999999999999888888887732 3456789999999999999999999875 45666543221
Q ss_pred CcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEE
Q 004636 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (740)
Q Consensus 500 ~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~ 579 (740)
..+.|.|.|+|+|||++.++++|+|||+.+.......+|+||||++|+++++.|||++++.|. +|+|++|
T Consensus 260 ---------~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~-~~~Gt~~ 329 (333)
T TIGR02966 260 ---------GGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESE-LGKGSTF 329 (333)
T ss_pred ---------CEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEec-CCCCeEE
Confidence 137899999999999999999999999876544445689999999999999999999999998 5889999
Q ss_pred EEEE
Q 004636 580 IFIV 583 (740)
Q Consensus 580 ~~~l 583 (740)
++.+
T Consensus 330 ~i~l 333 (333)
T TIGR02966 330 SFIF 333 (333)
T ss_pred EEEC
Confidence 8763
No 33
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=7.6e-28 Score=270.45 Aligned_cols=229 Identities=24% Similarity=0.354 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (740)
Q Consensus 321 ~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lL 400 (740)
+++.+....++++..+.++..+.++.|++++||||||||+.|.+.++++.+. .....+.+.++.++|..++++++
T Consensus 206 ~Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l 280 (435)
T PRK09467 206 SEVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFI 280 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888888899999999999999999999888877432 22344567888999999999999
Q ss_pred HHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeE
Q 004636 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480 (740)
Q Consensus 401 d~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i 480 (740)
++.|.+.+ ...+++++.+++++++.... ..+..+.++++.. +..+.+|+..+.+++.||++||+||+ .|.|
T Consensus 281 ~~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i 351 (435)
T PRK09467 281 DYLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWI 351 (435)
T ss_pred HHhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 99987643 34568999999999987655 2344455555443 33567899999999999999999998 4667
Q ss_pred EEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHH
Q 004636 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~ 560 (740)
.|..... +..+.|+|.|+|+||++++++++|+||++.+.. ++.+|+||||+||+++++
T Consensus 352 ~i~~~~~--------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~--~~~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 352 KVSSGTE--------------------GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA--RGSSGTGLGLAIVKRIVD 409 (435)
T ss_pred EEEEEec--------------------CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC--CCCCCeehhHHHHHHHHH
Confidence 7765432 114789999999999999999999999997643 345799999999999999
Q ss_pred HcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 561 LMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 561 ~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
.|||++.+.|. +++|++|++.+|+.
T Consensus 410 ~~~g~l~i~~~-~~~G~~~~i~lp~~ 434 (435)
T PRK09467 410 QHNGKVELGNS-EEGGLSARAWLPLT 434 (435)
T ss_pred HCCCEEEEEEC-CCCcEEEEEEEeCC
Confidence 99999999988 57799999888764
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.96 E-value=9.7e-28 Score=261.52 Aligned_cols=218 Identities=24% Similarity=0.368 Sum_probs=172.7
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHH
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~ 421 (740)
+.+++|++.++||+||||++|.|+.+++.+...+++.+++++.+.++++++..++++++.+.+... ..+.++..
T Consensus 128 ~~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~ 201 (348)
T PRK11073 128 VAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHK 201 (348)
T ss_pred HHHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHH
Confidence 345679999999999999999999999887666677788999999999999999999998765432 34679999
Q ss_pred HHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcC-C-CCeEEEEEEEecccccccCCCCC
Q 004636 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT-K-EGNISITGFVAKSESLRDSRAPE 499 (740)
Q Consensus 422 li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t-~-~g~i~i~~~~~~~~~~~~~~~~~ 499 (740)
+++.+...+.... .+++.+.++.+++.|. +.+|+.++.||+.||++||+||+ + .|.|.+..........
T Consensus 202 ~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~-i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~------- 272 (348)
T PRK11073 202 VAERVVQLVSLEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTL------- 272 (348)
T ss_pred HHHHHHHHHhhhc-cCCcEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEcccccccc-------
Confidence 9999888777554 3567777777666654 56799999999999999999996 3 4566665422111000
Q ss_pred CcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEE
Q 004636 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (740)
Q Consensus 500 ~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~ 579 (740)
........+.++|.|+|+|||++..+++|+|||+++ .+|+||||+|||++++.|||+|+++|. +| |++|
T Consensus 273 ---~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~------~~g~GlGL~i~~~iv~~~gG~i~~~s~-~~-~~~f 341 (348)
T PRK11073 273 ---HGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR------EGGTGLGLSIARNLIDQHSGKIEFTSW-PG-HTEF 341 (348)
T ss_pred ---CCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC------CCCccCCHHHHHHHHHHcCCeEEEEec-CC-ceEE
Confidence 000111246799999999999999999999999764 469999999999999999999999997 46 4888
Q ss_pred EEEEEe
Q 004636 580 IFIVKL 585 (740)
Q Consensus 580 ~~~l~l 585 (740)
++.+|+
T Consensus 342 ~i~lP~ 347 (348)
T PRK11073 342 SVYLPI 347 (348)
T ss_pred EEEEec
Confidence 888875
No 35
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.96 E-value=6.6e-27 Score=265.26 Aligned_cols=240 Identities=26% Similarity=0.380 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 321 DLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL 400 (740)
Q Consensus 321 ~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lL 400 (740)
+++.+....++++..++++. +...+|++.++||+|||++.+.+.++.+.+....++..++++.+..+++++..++++++
T Consensus 234 dEi~~l~~~~~~m~~~l~~~-~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 312 (475)
T PRK11100 234 SELRELAQALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLL 312 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666655543 34567999999999999999999999988755566677899999999999999999999
Q ss_pred HHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-Ce
Q 004636 401 DLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GN 479 (740)
Q Consensus 401 d~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~ 479 (740)
.+++++.........++++.++++++...+......+++.+.++.+ +..+.+|...+.+++.||+.||+||+.+ |.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~ 389 (475)
T PRK11100 313 ELARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGT 389 (475)
T ss_pred HHHhcccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999998877777789999999999999999988889988877664 3446679999999999999999999864 66
Q ss_pred EEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHH
Q 004636 480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV 559 (740)
Q Consensus 480 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv 559 (740)
|.+.+.... ..+.++|+|+|+|||+++++++|++|++.+.. ....+|+||||+||++++
T Consensus 390 i~i~~~~~~--------------------~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~ 448 (475)
T PRK11100 390 ITLSAEVDG--------------------EQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLAFVREVA 448 (475)
T ss_pred EEEEEEEcC--------------------CEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHHHHHHHH
Confidence 777654321 14889999999999999999999999987532 234579999999999999
Q ss_pred HHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 560 NLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 560 ~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
+.|||+++++|. +|+|++|.+.+|..
T Consensus 449 ~~~~G~i~i~s~-~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 449 RLHGGEVTLRNR-PEGGVLATLTLPRH 474 (475)
T ss_pred HHCCCEEEEEEc-CCCeEEEEEEeeCC
Confidence 999999999998 57799999888753
No 36
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-25 Score=237.76 Aligned_cols=218 Identities=40% Similarity=0.624 Sum_probs=180.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-ceeeeeeecHHH
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGS-LQLQIGTFNLHA 421 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~-~~l~~~~~~l~~ 421 (740)
.+..|++.++||+|||++.+.+..+.+... ..+..++.+..+...++++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988866554 222267788888889999999999999999998863 334467788999
Q ss_pred HHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCc
Q 004636 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFF 501 (740)
Q Consensus 422 li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~ 501 (740)
++.++...+......+.+.+....+ .+..+.+|+.++.|++.||++||+||++.+.|.+.......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~------------ 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDE------------ 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCC------------
Confidence 9999999999888777877775443 23456789999999999999999999986667776543211
Q ss_pred CCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEE
Q 004636 502 PVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 581 (740)
Q Consensus 502 ~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~ 581 (740)
++.++|.|+|+||+++.++++|+||++++.. .+|+||||+|||++++.|||.++++|. +|.|++|++
T Consensus 259 --------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~----~~g~GlGL~i~~~~~~~~~g~i~~~~~-~~~Gt~~~i 325 (336)
T COG0642 259 --------QVTISVEDTGPGIPEEELERIFEPFFRTDKS----RSGTGLGLAIVKRIVELHGGTISVESE-PGKGTTFTI 325 (336)
T ss_pred --------eEEEEEEcCCCCCCHHHHHHhccCeeccCCC----CCCCCccHHHHHHHHHHcCCEEEEEec-CCCceEEEE
Confidence 4899999999999999999999999998753 239999999999999999999999998 477899999
Q ss_pred EEEeCCC
Q 004636 582 IVKLGIP 588 (740)
Q Consensus 582 ~l~l~~~ 588 (740)
++|....
T Consensus 326 ~lP~~~~ 332 (336)
T COG0642 326 RLPLAPA 332 (336)
T ss_pred EEecccc
Confidence 8887643
No 37
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=2.1e-25 Score=260.01 Aligned_cols=213 Identities=29% Similarity=0.475 Sum_probs=182.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHH
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAV 422 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~l 422 (740)
...+|++.++||+||||+.|.++.+++.....+++..+.++.+.++++++..++++++++++.... ..+++++.++
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 456799999999999999999999998776666778899999999999999999999999987543 3468999999
Q ss_pred HHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEecccccccCCCCCCc
Q 004636 423 FREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPEFF 501 (740)
Q Consensus 423 i~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~-~g~i~i~~~~~~~~~~~~~~~~~~~ 501 (740)
++++...+......+++.+.++.+++.+. +.+|+..|.|++.|+++||+||++ .|.|.+.......
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~------------ 531 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELPP-IWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSD------------ 531 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCCe-EEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCC------------
Confidence 99999999887777888888888776654 457999999999999999999976 4566665432211
Q ss_pred CCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEE
Q 004636 502 PVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 581 (740)
Q Consensus 502 ~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~ 581 (740)
..+.|+|+|+|+|||++.++++|+||++.+ ..|+||||++||++++.|||+|+++|. +|+|++|++
T Consensus 532 -------~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~glGL~~~~~~~~~~~G~i~~~s~-~~~Gt~~~i 597 (607)
T PRK11360 532 -------GQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGTGLGLALSQRIINAHGGDIEVESE-PGVGTTFTL 597 (607)
T ss_pred -------CEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCCchhHHHHHHHHHHcCCEEEEEEc-CCCceEEEE
Confidence 127899999999999999999999999754 468999999999999999999999998 688999999
Q ss_pred EEEeC
Q 004636 582 IVKLG 586 (740)
Q Consensus 582 ~l~l~ 586 (740)
.+|..
T Consensus 598 ~lp~~ 602 (607)
T PRK11360 598 YLPIN 602 (607)
T ss_pred EecCC
Confidence 98874
No 38
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-24 Score=230.99 Aligned_cols=211 Identities=19% Similarity=0.275 Sum_probs=165.5
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhc---CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeee
Q 004636 344 RNDFLAVMNHEMRTPMHAIIALSSLLQE---TELTP---EQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTF 417 (740)
Q Consensus 344 k~~fla~iSHELRtPL~~I~g~~~lL~~---~~l~~---~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~ 417 (740)
-.+-..-++||||||||-|.-.++-|.. ...++ .-++..++|.++...+.+|+++.-+|+|+.. ++++..
T Consensus 486 W~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~----p~~e~~ 561 (712)
T COG5000 486 WGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPA----PKLEKS 561 (712)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcc
Confidence 3445566999999999999988887753 22333 2356789999999999999999999999865 455689
Q ss_pred cHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-----Ce-EEEEEEEecccc
Q 004636 418 NLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-----GN-ISITGFVAKSES 491 (740)
Q Consensus 418 ~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-----g~-i~i~~~~~~~~~ 491 (740)
||.++++++....+.. ...+.+..++..+ |....+|+..|.|++.||+.||.++-.. +. -.+++....
T Consensus 562 dL~~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~--- 635 (712)
T COG5000 562 DLRALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD--- 635 (712)
T ss_pred hHHHHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEec---
Confidence 9999999999887743 3466677777655 7777789999999999999999998532 11 012222111
Q ss_pred cccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEee
Q 004636 492 LRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (740)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~ 571 (740)
.+..+.+.|.|||.|+|.+.+.++||||.+++ .+||||||+|||+|+|.|||++++.+.
T Consensus 636 ---------------~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr------~KGTGLGLAiVKkIvEeHGG~leL~da 694 (712)
T COG5000 636 ---------------ADGRIVVDVIDNGKGFPRENRHRALEPYVTTR------EKGTGLGLAIVKKIVEEHGGRLELHNA 694 (712)
T ss_pred ---------------CCCeEEEEEecCCCCCChHHhhhhccCceecc------cccccccHHHHHHHHHhcCCeEEecCC
Confidence 12248899999999999999999999999876 479999999999999999999999987
Q ss_pred cCCceEEEEEEEEe
Q 004636 572 GLGKGCTAIFIVKL 585 (740)
Q Consensus 572 ~~g~G~~~~~~l~l 585 (740)
+.-.|..+.+.+|.
T Consensus 695 ~d~~GA~i~i~fp~ 708 (712)
T COG5000 695 PDFDGAMIRIKFPL 708 (712)
T ss_pred CCCCCcEEEEEccc
Confidence 54447776666654
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.93 E-value=7.8e-25 Score=264.79 Aligned_cols=209 Identities=14% Similarity=0.163 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q 004636 331 DSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSL 410 (740)
Q Consensus 331 ~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~ 410 (740)
++++++++++++.+++|+++|||||||||++|.|+++++.+...+++...++..+......+....+.++..
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 663 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS-------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 345556666778899999999999999999999999998876667777776666655555555555544321
Q ss_pred eeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEE
Q 004636 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE----GNISITGFV 486 (740)
Q Consensus 411 ~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~----g~i~i~~~~ 486 (740)
....++++.++++++...+......+...+.+.++.+.+.....+...+.||+.||++||+||+.. |.|.+....
T Consensus 664 -~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 664 -EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred -ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 234578999999999998887776666556666655544444456678899999999999999743 456665432
Q ss_pred ecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEE
Q 004636 487 AKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHI 566 (740)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I 566 (740)
. ++.++.|+|+|||+|||++.. ...|+||||+|||+||+.|||+|
T Consensus 743 ~-------------------~~~~v~i~V~D~G~GI~~~~~----------------~~~~~gLGLai~~~iv~~~gG~I 787 (807)
T PRK13560 743 Q-------------------GDGMVNLCVADDGIGLPAGFD----------------FRAAETLGLQLVCALVKQLDGEI 787 (807)
T ss_pred c-------------------CCCEEEEEEEeCCCcCCcccc----------------ccccCCccHHHHHHHHHHcCCEE
Confidence 1 122589999999999998731 13577899999999999999999
Q ss_pred EEEeecCCceEEEEEEEEeC
Q 004636 567 WIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 567 ~v~S~~~g~G~~~~~~l~l~ 586 (740)
+++|. +||+|+|++|+.
T Consensus 788 ~v~S~---~Gt~F~i~lP~~ 804 (807)
T PRK13560 788 ALDSR---GGARFNIRFPMS 804 (807)
T ss_pred EEEcC---CceEEEEEecCC
Confidence 99984 599999999874
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.92 E-value=7.9e-23 Score=232.38 Aligned_cols=194 Identities=16% Similarity=0.240 Sum_probs=152.1
Q ss_pred HHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHH
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETEL-TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~ 420 (740)
+.++++.+.++||+||||++|.+.++++++... +++.++..+.|.+.+.++.+.++++++..|. ...+++++.
T Consensus 300 ~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L~ 373 (495)
T PRK11644 300 SVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTLE 373 (495)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCHH
Confidence 567789999999999999999999998876443 3445677888999999999999999876542 234578999
Q ss_pred HHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCC
Q 004636 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEF 500 (740)
Q Consensus 421 ~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~ 500 (740)
+.++++++.+..... ++.+.++.+.+.+....+|+..+.|++.|+++||+||++.+.|.+.....+
T Consensus 374 ~~l~~l~~~l~~~~~--~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~------------ 439 (495)
T PRK11644 374 QAIRSLMREMELEDR--GIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQD------------ 439 (495)
T ss_pred HHHHHHHHHHHHhhc--CceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcC------------
Confidence 999999988875443 444444443322223445788899999999999999999888777654321
Q ss_pred cCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEE
Q 004636 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (740)
Q Consensus 501 ~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~ 580 (740)
..+.++|+|+|+|||+++ .|+|+||++||++++.|||+++++| |+|++|+
T Consensus 440 --------~~i~l~V~DnG~Gi~~~~-------------------~~~GLGL~ivr~iv~~~GG~i~v~S---~~Gt~f~ 489 (495)
T PRK11644 440 --------ERLMLVIEDDGSGLPPGS-------------------GQQGFGLRGMRERVTALGGTLTISC---THGTRLS 489 (495)
T ss_pred --------CEEEEEEEECCCCCCcCC-------------------CCCCCcHHHHHHHHHHcCCEEEEEc---CCCEEEE
Confidence 148899999999998752 3679999999999999999999998 5689999
Q ss_pred EEEEe
Q 004636 581 FIVKL 585 (740)
Q Consensus 581 ~~l~l 585 (740)
+.+|.
T Consensus 490 I~LP~ 494 (495)
T PRK11644 490 VSLPQ 494 (495)
T ss_pred EEEeC
Confidence 88874
No 41
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.90 E-value=8.8e-23 Score=235.77 Aligned_cols=196 Identities=24% Similarity=0.305 Sum_probs=135.2
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHH
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAV 422 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~l 422 (740)
...++++.++||+||||++|.|++++... ++..+++.. .+++....++++++..+ .+ +
T Consensus 338 ~~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~-----~ 395 (542)
T PRK11086 338 NYADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILK---TANNYQEEIGSLLGKIK----------SP-----V 395 (542)
T ss_pred HHHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHH---HHHHHHHHHHHHHHhcc----------CH-----H
Confidence 34567788999999999999998886432 222233222 22222233333332211 01 1
Q ss_pred HHHHHHHHhhhhhhcCeEEEEEeCCCCCcce-eccHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecccccccCCCC
Q 004636 423 FREVLNLIKPIASVKKLLVALNLAPDLPEYA-VGDEKRLMQTLLNVVGNAVKFTK---EGNISITGFVAKSESLRDSRAP 498 (740)
Q Consensus 423 i~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v-~~D~~~L~qVl~NLl~NAik~t~---~g~i~i~~~~~~~~~~~~~~~~ 498 (740)
+...+......+..+++.+.++.++.+|... ..+...|.||+.||++||+||++ .|.|.+......
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~---------- 465 (542)
T PRK11086 396 IAGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRN---------- 465 (542)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcC----------
Confidence 1122222223455677777777665555432 12345799999999999999963 456666543321
Q ss_pred CCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEE
Q 004636 499 EFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 578 (740)
Q Consensus 499 ~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~ 578 (740)
..+.|+|+|+|+|||++.++++|+|||+++ .+|+||||+|||++++.|||+|+++|. +|+|++
T Consensus 466 ----------~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~------~~g~GlGL~iv~~iv~~~~G~i~v~s~-~~~G~~ 528 (542)
T PRK11086 466 ----------GWLHCEVSDDGPGIAPDEIDAIFDKGYSTK------GSNRGVGLYLVKQSVENLGGSIAVESE-PGVGTQ 528 (542)
T ss_pred ----------CEEEEEEEECCCCCCHHHHHHHHhCCCccC------CCCCcCcHHHHHHHHHHcCCEEEEEeC-CCCcEE
Confidence 247899999999999999999999999754 469999999999999999999999998 688999
Q ss_pred EEEEEEeCC
Q 004636 579 AIFIVKLGI 587 (740)
Q Consensus 579 ~~~~l~l~~ 587 (740)
|++.+|...
T Consensus 529 f~i~lP~~~ 537 (542)
T PRK11086 529 FFVQIPWDG 537 (542)
T ss_pred EEEEEeCCC
Confidence 999998753
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.90 E-value=6.9e-22 Score=206.43 Aligned_cols=211 Identities=20% Similarity=0.328 Sum_probs=168.7
Q ss_pred HHHHHHhHhhhhhHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHH
Q 004636 345 NDFLAVMNHEMRTPMHAIIALSS---LLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (740)
Q Consensus 345 ~~fla~iSHELRtPL~~I~g~~~---lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~ 421 (740)
++=+.++||||+.||+++.+|.= ...+...+...+.+++.|..-.+|+..+|+.+..|+|-.+++-++ .|+++.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 45578899999999999988643 233455667778999999999999999999999999988877554 5899999
Q ss_pred HHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCc
Q 004636 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFF 501 (740)
Q Consensus 422 li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~ 501 (740)
++..+.+.+....+.+.+.+. .+.+. .+|.||..+++||+.||+-||++++..-.-.|.+....+
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li--~ptD~-~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~------------ 594 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLI--NPTDD-LMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGT------------ 594 (673)
T ss_pred HHHHHHHHHHhhhhhcccccc--CCccc-ceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecC------------
Confidence 999999999988877775544 33343 457899999999999999999998754322232222211
Q ss_pred CCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEE
Q 004636 502 PVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 581 (740)
Q Consensus 502 ~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~ 581 (740)
+...+++.|.|+|+|.|-+..+++|.||.+++ .-|.||||+||..+++.|.|++.+.|. .-++..+..
T Consensus 595 -----~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK------~vgLGlGLSIsqSlmeqmqG~l~lASt-Lt~nA~ViL 662 (673)
T COG4192 595 -----EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK------EVGLGLGLSISQSLMEQMQGRLALAST-LTKNAMVIL 662 (673)
T ss_pred -----cccceEEEEecCCCCCchhHHHHhcCCccccc------ccccccchhHHHHHHHHhcCcchHhhh-cccCcEEEE
Confidence 12248899999999999999999999998765 469999999999999999999999997 566766554
Q ss_pred EEE
Q 004636 582 IVK 584 (740)
Q Consensus 582 ~l~ 584 (740)
.+.
T Consensus 663 ~f~ 665 (673)
T COG4192 663 EFQ 665 (673)
T ss_pred EEe
Confidence 443
No 43
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.90 E-value=5.5e-19 Score=205.53 Aligned_cols=345 Identities=15% Similarity=0.172 Sum_probs=213.2
Q ss_pred HhhhhhHHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCC-Cc-eEEEEEeeccCCCCcceecCC
Q 004636 133 MGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRT-GL-ELQLSYTLRQQNPVGYTVPIQ 210 (740)
Q Consensus 133 ~~~~~~~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 210 (740)
...+.++.+....+|..++.+..+.+....+.....++.+.++.....+...+.. +. .......
T Consensus 209 t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------- 274 (569)
T PRK10600 209 TAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQ-------------- 274 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCC--------------
Confidence 3334444455566788899999998888888899999999998887665332211 11 1011100
Q ss_pred chhHHHHhhcCCceEecCCCccccccccccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchh
Q 004636 211 LPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHV 290 (740)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~ 290 (740)
+. ..... ..+ ...+... .+.. .+.....|| +......+|++.......+.+++
T Consensus 275 -~~---~~~~~------~~~---~~~~~~~--~~~~-----------~~~~~~~~~-l~~~~~~~G~~~~~~~~~~~l~~ 327 (569)
T PRK10600 275 -SD---MTCDD------KGC---QLCPRGV--LPVG-----------DRGTTLKWR-LSDKHGQYGILLATLPQGRHLSH 327 (569)
T ss_pred -Cc---cCccc------ccc---ccccccC--CCcC-----------CCCceEEEE-eecCCcceEEEEEEcCCCCCCCH
Confidence 00 00000 000 0000000 0000 000011233 23344455666655555667889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHh
Q 004636 291 HELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQ 370 (740)
Q Consensus 291 ~~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~ 370 (740)
++.++++.++.|++.++...+..++. +++. .. +.++.+...+-|.+..+|+.+....+.++
T Consensus 328 ~~~~ll~~l~~~l~~~l~~~~~~~~~-----------~~~~----~~----~er~~iarelhd~i~~~L~~l~~~~~~l~ 388 (569)
T PRK10600 328 DQQQLVDTLVEQLTATLALERQQERQ-----------QQLI----VM----EERATIARELHDSIAQSLSCMKMQVSCLQ 388 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH----HH----HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999877644321110 0000 00 11222222233334445555555544443
Q ss_pred c--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCC
Q 004636 371 E--TELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPD 448 (740)
Q Consensus 371 ~--~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~ 448 (740)
. ...+++.++.+..|.+..+++...+++++...+.. ..+.++.+.+++++..+.... ++.+.++.+..
T Consensus 389 ~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~ 458 (569)
T PRK10600 389 MQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSARF---GFPVKLDYQLP 458 (569)
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 2 33456778899999999999999999999877642 346789999999988887554 33344443222
Q ss_pred CCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChh
Q 004636 449 LPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP 528 (740)
Q Consensus 449 ~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~ 528 (740)
.+.....++..+.|++.|+++||+||++.+.|.|...... ..+.++|.|+|+|||++.
T Consensus 459 ~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~--------------------~~~~l~V~D~G~Gi~~~~-- 516 (569)
T PRK10600 459 PRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQ--------------------NQVKLSVQDNGCGVPENA-- 516 (569)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC--------------------CEEEEEEEECCCCCCccc--
Confidence 1111122455699999999999999998888777653221 248899999999999853
Q ss_pred hhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 529 NLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 529 ~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
..|+|+||+|||++++.|||+++++|. +|+||+|++.+|..
T Consensus 517 ----------------~~~~glGL~i~~~~~~~lgG~l~i~s~-~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 517 ----------------ERSNHYGLIIMRDRAQSLRGDCRVRRR-ESGGTEVVVTFIPE 557 (569)
T ss_pred ----------------cCCCCccHHHHHHHHHHcCCEEEEEEC-CCCCEEEEEEEecC
Confidence 136799999999999999999999998 57899999988764
No 44
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.89 E-value=1.2e-21 Score=226.91 Aligned_cols=196 Identities=17% Similarity=0.146 Sum_probs=142.3
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHH
Q 004636 346 DFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFRE 425 (740)
Q Consensus 346 ~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~ 425 (740)
+.+..++||++|||++|.|+.++- +..+.++.+.+.+.++..+++++....+. ..+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHHH
Confidence 456678999999999999976642 22346677788888888888888764321 112222
Q ss_pred HHHHHhhhhhhcCeEEEEEeCCCCC-cceeccHHHHHHHHHHHHHHHhhcC---CCC--eEEEEEEEecccccccCCCCC
Q 004636 426 VLNLIKPIASVKKLLVALNLAPDLP-EYAVGDEKRLMQTLLNVVGNAVKFT---KEG--NISITGFVAKSESLRDSRAPE 499 (740)
Q Consensus 426 ~~~~~~~~~~~k~i~l~~~~~~~~p-~~v~~D~~~L~qVl~NLl~NAik~t---~~g--~i~i~~~~~~~~~~~~~~~~~ 499 (740)
+... ...+..+++.+.+..+..+. .....|+..+.|++.||++||+||+ ++| .|.+.....
T Consensus 399 l~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~------------ 465 (545)
T PRK15053 399 LFGK-VQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE------------ 465 (545)
T ss_pred HHHH-HHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC------------
Confidence 2211 23345567766665443321 1234699999999999999999994 333 455443221
Q ss_pred CcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEE
Q 004636 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTA 579 (740)
Q Consensus 500 ~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~ 579 (740)
+..+.|+|+|+|+|||++..+++|++||+++. ++.+|+||||+|||++++.|||+|+++|. .|.||+|
T Consensus 466 --------~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~---~~~~g~GlGL~ivk~iv~~~~G~i~v~s~-~~~Gt~f 533 (545)
T PRK15053 466 --------GDDVVIEVADQGCGVPESLRDKIFEQGVSTRA---DEPGEHGIGLYLIASYVTRCGGVITLEDN-DPCGTLF 533 (545)
T ss_pred --------CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCC---CCCCCceeCHHHHHHHHHHcCCEEEEEEC-CCCeEEE
Confidence 12478999999999999999999999998753 23468999999999999999999999998 6889999
Q ss_pred EEEEEeCC
Q 004636 580 IFIVKLGI 587 (740)
Q Consensus 580 ~~~l~l~~ 587 (740)
++.+|...
T Consensus 534 ~i~lP~~~ 541 (545)
T PRK15053 534 SIFIPKVK 541 (545)
T ss_pred EEEECCCC
Confidence 99988643
No 45
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=5e-21 Score=194.55 Aligned_cols=117 Identities=23% Similarity=0.405 Sum_probs=109.9
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+|||||||+..++.+...|++.||+|..+.+|.+|++.+. . ||+|++|++||+|||+++|++||+. ....+|||+
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~---~~~~~PIi~ 77 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAK---KGSGPPIIV 77 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECCCCCCCHHHHHHHHHhh---cCCCCcEEE
Confidence 7999999999999999999999999999999999999884 6 9999999999999999999999854 345678999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
+|+..+..++...+++|||||++|||+++||.++++.++++.
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999998775
No 46
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.83 E-value=2.6e-16 Score=182.99 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=137.8
Q ss_pred HHhHhhhhhHHHHHHHHHHH----HhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHH
Q 004636 349 AVMNHEMRTPMHAIIALSSL----LQET--ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAV 422 (740)
Q Consensus 349 a~iSHELRtPL~~I~g~~~l----L~~~--~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~l 422 (740)
..++||+++|++.+..+... +.+. ...++..+.+..+.+...++...+.+++...+ ....++++.+.
T Consensus 365 ~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~~ 437 (565)
T PRK10935 365 ATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGSA 437 (565)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHHH
Confidence 45899999988877665443 3322 22345556777777777888888888876543 33457899999
Q ss_pred HHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcC
Q 004636 423 FREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFP 502 (740)
Q Consensus 423 i~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~ 502 (740)
+.+++..++... +..+.++.+.+.+.....++.++.|++.|++.||+||++.|.+.+......
T Consensus 438 l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~-------------- 500 (565)
T PRK10935 438 LEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNP-------------- 500 (565)
T ss_pred HHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC--------------
Confidence 999999887543 333333332111112223456799999999999999999888877654321
Q ss_pred CCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEE
Q 004636 503 VPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI 582 (740)
Q Consensus 503 ~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~ 582 (740)
...+.++|.|+|+|||++. ..|+|+||+||+++++.|||+|+++|. +|+|++|++.
T Consensus 501 -----~~~~~i~V~D~G~Gi~~~~------------------~~~~glGL~i~~~iv~~~~G~i~v~s~-~~~Gt~~~i~ 556 (565)
T PRK10935 501 -----DGEHTVSIRDDGIGIGELK------------------EPEGHYGLNIMQERAERLGGTLTISQP-PGGGTTVSLT 556 (565)
T ss_pred -----CCEEEEEEEECCcCcCCCC------------------CCCCCcCHHHHHHHHHHcCCEEEEEEC-CCCcEEEEEE
Confidence 1248899999999999732 247899999999999999999999998 5889999998
Q ss_pred EEeC
Q 004636 583 VKLG 586 (740)
Q Consensus 583 l~l~ 586 (740)
+|..
T Consensus 557 lP~~ 560 (565)
T PRK10935 557 FPSQ 560 (565)
T ss_pred ECCC
Confidence 8865
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.83 E-value=3.5e-19 Score=195.24 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=139.1
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHH
Q 004636 344 RNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVF 423 (740)
Q Consensus 344 k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li 423 (740)
+.+|++.++||+||||+.|.|+.+++... .+..++++.+.+.+.++.++++++++.++ .+++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHHH
Confidence 45688999999999999999999988622 23345678888999999999999987643 3579999999
Q ss_pred HHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhc---CC-CCeEEEEEEEecccccccCCCCC
Q 004636 424 REVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKF---TK-EGNISITGFVAKSESLRDSRAPE 499 (740)
Q Consensus 424 ~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~---t~-~g~i~i~~~~~~~~~~~~~~~~~ 499 (740)
++++..+... +..+.++. +..+. ...+...|.|||.||+.||+|| ++ .|.|.|......
T Consensus 238 ~~~~~~~~~~----~~~i~~~~-~~~~~-~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~----------- 300 (361)
T PRK13559 238 RAQVAPYAPR----ATRVAFEG-PGIRL-GAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP----------- 300 (361)
T ss_pred HHHHHhhcCC----CceEEEEC-CCeee-CHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC-----------
Confidence 9998877643 33344443 22211 1112356999999999999999 43 477777652111
Q ss_pred CcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHH-cCCEEEEEeecCCceEE
Q 004636 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL-MEGHIWIESEGLGKGCT 578 (740)
Q Consensus 500 ~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~-~gG~I~v~S~~~g~G~~ 578 (740)
.+..+.+.|.|+|.|++++ ..|+|+||+||+++++. |||++++++. +.|++
T Consensus 301 -------~~~~~~i~v~d~G~~~~~~-------------------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~--~~G~~ 352 (361)
T PRK13559 301 -------EGAGFRIDWQEQGGPTPPK-------------------LAKRGFGTVIIGAMVESQLNGQLEKTWS--DDGLL 352 (361)
T ss_pred -------CCCeEEEEEECCCCCCCCC-------------------CCCCCcHHHHHHHHHHHHcCCeEEEEEc--CCeEE
Confidence 1224789999999987653 35789999999999997 9999999987 45999
Q ss_pred EEEEEEeC
Q 004636 579 AIFIVKLG 586 (740)
Q Consensus 579 ~~~~l~l~ 586 (740)
|++++|+.
T Consensus 353 ~~l~~P~~ 360 (361)
T PRK13559 353 ARIEIPSR 360 (361)
T ss_pred EEEEEeCC
Confidence 99998853
No 48
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=2.1e-19 Score=162.45 Aligned_cols=109 Identities=37% Similarity=0.569 Sum_probs=96.3
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhc
Q 004636 455 GDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTK 533 (740)
Q Consensus 455 ~D~~~L~qVl~NLl~NAik~t~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~ 533 (740)
||+.++.+++.||++||++|+++ +.|.|.+..... .+.|+|.|+|.|||+++++++|++
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~d~G~gi~~~~l~~~~~~ 60 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD--------------------HLSIEISDNGVGIPPEELEKLFEP 60 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------EEEEEEEESSSSTTHHHHHHHCST
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------eEEEEEEeccccccccccccchhh
Confidence 69999999999999999999986 788887654422 489999999999999999999999
Q ss_pred ccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEe
Q 004636 534 FAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (740)
Q Consensus 534 F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l 585 (740)
|++.+. .....+|+|+||++|+.+++.|+|++++.+. .++|++|+|.+|+
T Consensus 61 ~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~-~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 61 FFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESS-EGGGTTVTFTLPL 110 (111)
T ss_dssp TSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEE-TTTEEEEEEEEEG
T ss_pred cccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEc-CCCcEEEEEEEEC
Confidence 998875 3344678999999999999999999999998 5889999999986
No 49
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.77 E-value=4.5e-17 Score=177.09 Aligned_cols=194 Identities=23% Similarity=0.297 Sum_probs=139.4
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHH
Q 004636 346 DFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFRE 425 (740)
Q Consensus 346 ~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~ 425 (740)
+-+...+||..|=|++|.|+.++=. ..+..+.|.+.++.-...++.+..- +. ++++..
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~-------yd~a~~~I~~~~~~qq~~~~~l~~~--i~-------------~~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGE-------YDDALDYIQQESEEQQELIDSLSEK--IK-------------DPVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHHHHhhhhhhHHHHHHh--cc-------------cHHHHH
Confidence 3456689999999999999887532 2233444555555555555544321 11 122333
Q ss_pred HHHHHhhhhhhcCeEEEEEeCCCCCcc-eeccHHHHHHHHHHHHHHHhhcCC--C--CeEEEEEEEecccccccCCCCCC
Q 004636 426 VLNLIKPIASVKKLLVALNLAPDLPEY-AVGDEKRLMQTLLNVVGNAVKFTK--E--GNISITGFVAKSESLRDSRAPEF 500 (740)
Q Consensus 426 ~~~~~~~~~~~k~i~l~~~~~~~~p~~-v~~D~~~L~qVl~NLl~NAik~t~--~--g~i~i~~~~~~~~~~~~~~~~~~ 500 (740)
.+---...+++.++.+.++....+|.. -.-+..-+-.++.||++||+.++- + ..|.+....
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~-------------- 458 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD-------------- 458 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe--------------
Confidence 333334457788988888777666542 123788899999999999999864 2 345554332
Q ss_pred cCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEE
Q 004636 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAI 580 (740)
Q Consensus 501 ~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~ 580 (740)
.+..+.|+|.|+|||||++..+++|++-|+++. ..|.|.||++||++|+.+||.|+++|+ .+.|++|+
T Consensus 459 ------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rGiGL~Lvkq~V~~~~G~I~~~s~-~~~Gt~F~ 526 (537)
T COG3290 459 ------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRGIGLYLVKQLVERLGGSIEVESE-KGQGTRFS 526 (537)
T ss_pred ------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCchhHHHHHHHHHHcCceEEEeeC-CCCceEEE
Confidence 223589999999999999999999999887763 478999999999999999999999998 57899998
Q ss_pred EEEEeCC
Q 004636 581 FIVKLGI 587 (740)
Q Consensus 581 ~~l~l~~ 587 (740)
+.+|...
T Consensus 527 i~iP~~~ 533 (537)
T COG3290 527 IYIPKVK 533 (537)
T ss_pred EECCCCc
Confidence 8887653
No 50
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.75 E-value=1.1e-17 Score=182.56 Aligned_cols=119 Identities=28% Similarity=0.469 Sum_probs=110.4
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCC-CCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSH-EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~-~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||||||++..|..+...|+..||+|..+.|+.+|++.+.. .+|+|++|+.||+|||++++++|++ .++..|||
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~----~~~~~pVI 80 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKS----RDPDLPVI 80 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHh----hCCCCCEE
Confidence 369999999999999999999999999999999999999854 5799999999999999999999964 34677899
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
++|++.+.+...++++.||.|||.|||++++|...++++++.+.
T Consensus 81 ~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 81 VMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998754
No 51
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.74 E-value=1e-17 Score=182.25 Aligned_cols=116 Identities=24% Similarity=0.487 Sum_probs=105.5
Q ss_pred ceEEeecCchHHHHHHHHHHH--hcCCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCc
Q 004636 613 LKVLVMDENGVSRSVTKGLLL--HLGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~--~~g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~ 688 (740)
.+||||||.+..|+.++.++. ..|++++ +|.||.||++.++ .+||+||+|+.||+|||+++++.+|+ ..|.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike----~~p~~ 77 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKE----QSPDT 77 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHHH----hCCCc
Confidence 479999999999999999996 4689877 8999999999985 58999999999999999999999975 34666
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 689 ~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
.+|++|++.+.+.+.++++.|+.|||.||++.++|.+++.++.+
T Consensus 78 ~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 78 EFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred eEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999988754
No 52
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-17 Score=171.10 Aligned_cols=123 Identities=24% Similarity=0.391 Sum_probs=110.8
Q ss_pred CCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 611 ~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
..++||+|||.+.++..++.+|+..||++..+.||+++++... +.+|+||+|++||+|||+|++++|+... ......|
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~-p~t~~ip 91 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMS-PSTRRIP 91 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccCCceEEeeccCCCccHHHHHHHHHhcC-Ccccccc
Confidence 4578999999999999999999999999999999999999875 4679999999999999999999997633 3456678
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
||++|+..+.+...+++.+|+++||.||+++.+|..+++..++.+
T Consensus 92 ~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 92 VILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred eEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998766443
No 53
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.72 E-value=4.2e-17 Score=153.88 Aligned_cols=116 Identities=25% Similarity=0.339 Sum_probs=106.8
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
-|.|||||..+|+.+..+|+..||++.+..|+++.+... ...|.++|+|+.||+|+|.|+-.+++. .....|||+
T Consensus 6 ~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~----~~~~~PVIf 81 (202)
T COG4566 6 LVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAE----RGIRLPVIF 81 (202)
T ss_pred eEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHh----cCCCCCEEE
Confidence 589999999999999999999999999999999999876 467899999999999999999988853 345667999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|++.+.....+++++||-|||.|||+.+.|.+++++.++.
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998865
No 54
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.72 E-value=1e-16 Score=144.40 Aligned_cols=110 Identities=27% Similarity=0.459 Sum_probs=102.3
Q ss_pred EEeecCchHHHHHHHHHHHhcCC-eEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGC-DVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
||||||++..++.++..|+..|| .+..+.|+.++++.+ ...||+|++|+.||+++|.+++++||+. .+.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~----~~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQI----NPSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHH----TTTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccc----cccccEEE
Confidence 79999999999999999999999 999999999999988 4679999999999999999999999754 26688999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHH
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLS 728 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~ 728 (740)
+|+..+.....+++++|+++|+.||++.++|.++|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999999875
No 55
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.71 E-value=8.6e-17 Score=154.85 Aligned_cols=121 Identities=18% Similarity=0.443 Sum_probs=107.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++|||||||+.+.++-+.++++. ||+++ +|.++++|..++. ..|||||+|+.||+.||++++..||.. +..+=
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~----~~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQ----HYPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhc----CCCCC
Confidence 37999999999999999999875 88877 8999999999885 578999999999999999999999753 33344
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLF 737 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~~~ 737 (740)
||++||-.+.+...++++.|+-||+.|||..+.|.+++.++.+++..+
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999988776443
No 56
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.69 E-value=3.7e-16 Score=157.53 Aligned_cols=121 Identities=26% Similarity=0.391 Sum_probs=108.9
Q ss_pred eEEeecCchHHHHHHHHHHHhcC-CeEE-EeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLG-CDVM-TVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g-~~v~-~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
+|+|+||++..|..++.+|+..+ ++|+ .+.||.++++.+ ...||+|++|+.||+|||+++++.||+ ..+..+|
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~----~~p~~~v 77 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRA----RGPDIKV 77 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcCCCEEEEcCCCCCCChHHHHHHHHH----HCCCCcE
Confidence 69999999999999999998765 8866 778899999986 468999999999999999999999973 3455679
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccccccc
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLFE 738 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~~~~ 738 (740)
+++|.+.+.....+++++||++|+.|+.++++|.++++.++.+..+++
T Consensus 78 vvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~ 125 (211)
T COG2197 78 VVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLP 125 (211)
T ss_pred EEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeC
Confidence 999999999999999999999999999999999999999998876654
No 57
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.67 E-value=1.5e-15 Score=140.56 Aligned_cols=119 Identities=29% Similarity=0.551 Sum_probs=102.7
Q ss_pred CCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHH-HHHHHHCC--CCeEEEEecCCCCCCHHHHHHHHHHhhccCCCC
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVE-ECFRVVSH--EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHER 687 (740)
Q Consensus 611 ~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~-eal~~~~~--~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~ 687 (740)
.+.+||+|||++.++..+...|...|+.+..+.+|. +|++.+.. .||+|++|++||+|||+++++++|+. ...
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~----~~~ 79 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR----GPN 79 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCC
Confidence 346899999999999999999999999999999996 99998864 48999999999999999999999753 233
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHH-HHHHHHHHHcc
Q 004636 688 PLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEK-MRSVLSDLLEH 733 (740)
Q Consensus 688 ~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~-L~~~l~~~l~~ 733 (740)
+|+|++|++........+++.|+++|+.||+...+ |...+.+.+..
T Consensus 80 ~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 80 IPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred CCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 34788999999887788899999999999977776 78888766544
No 58
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.65 E-value=3.8e-15 Score=171.88 Aligned_cols=147 Identities=24% Similarity=0.351 Sum_probs=110.3
Q ss_pred ecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHH---HHHHHHHHhhcCC-------------CCeE
Q 004636 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQT---LLNVVGNAVKFTK-------------EGNI 480 (740)
Q Consensus 417 ~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qV---l~NLl~NAik~t~-------------~g~i 480 (740)
+.+..++...-..++..+...+..+.+.+.... ...|+..+.++ |.||+.||++|+. .|.|
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 445666666666666666555555555554432 34699999998 5799999999962 3567
Q ss_pred EEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChh---------------------hhhhccccccc
Q 004636 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP---------------------NLFTKFAQNQA 539 (740)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~---------------------~iF~~F~~~~~ 539 (740)
.+..... +..+.|+|+|+|.||+++.+. .||+|||++..
T Consensus 420 ~l~a~~~--------------------~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 420 ILSAEHQ--------------------GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEEc--------------------CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 6665432 124889999999999987553 69999887754
Q ss_pred ccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeCCC
Q 004636 540 IALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP 588 (740)
Q Consensus 540 ~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~~~ 588 (740)
.. +..+|.|+||++||++++.|||+|+++|. .|+||+|++.+|+...
T Consensus 480 ~~-~~~sGrGvGL~iVk~~ve~lgG~I~v~S~-~g~Gt~f~i~LPltla 526 (670)
T PRK10547 480 QV-TDVSGRGVGMDVVKRNIQEMGGHVEIQSK-QGKGTTIRILLPLTLA 526 (670)
T ss_pred cc-ccCCCCchhHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEEechhh
Confidence 32 34579999999999999999999999998 6999999999987653
No 59
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.61 E-value=6e-15 Score=160.02 Aligned_cols=122 Identities=21% Similarity=0.355 Sum_probs=111.8
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
..+||+|||+..+++.++++|...||.+..+.++++|+..+. .+||+||+|+.||+|||+++|+++|+... ...+||
T Consensus 132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~--t~~ipi 209 (435)
T COG3706 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLER--TRDIPI 209 (435)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCCCcEEEEecCCCccCHHHHHHHHhcccc--cccccE
Confidence 358999999999999999999999999999999999999885 48899999999999999999999987653 356779
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
|++++..+.....++++.|++||+.||++..++..++++.++...
T Consensus 210 i~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 210 ILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred EEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999998887654
No 60
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.60 E-value=2.2e-16 Score=187.22 Aligned_cols=248 Identities=31% Similarity=0.427 Sum_probs=203.2
Q ss_pred HHHHHHHH--HHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeee
Q 004636 339 TAIRARND--FLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGT 416 (740)
Q Consensus 339 ~~~~~k~~--fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~ 416 (740)
.+.-.+++ |.++++||+|+|++. |....+.+...+.+++.+.......+.....+++++++.++.++|..++...+
T Consensus 214 ~~~~~~sq~~~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~r 291 (786)
T KOG0519|consen 214 AAVWSPSQKGFLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKR 291 (786)
T ss_pred hcccCccchhhcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeee
Confidence 33334444 999999999999987 55556666778899999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccccccc--
Q 004636 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRD-- 494 (740)
Q Consensus 417 ~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~-- 494 (740)
|++..++..+...+...+..++..+....+.+.|..+.+|+.++.|++.|+++||+||+..|.+..............
T Consensus 292 f~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~ 371 (786)
T KOG0519|consen 292 FDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDV 371 (786)
T ss_pred cchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHH
Confidence 999999999999999999999999988888888888999999999999999999999999998877665433211100
Q ss_pred --------CCCC------------CCc-C-CCC----CCceEEEEEEEecCCCCCcCChhh-hhhcccccccccCCCCCC
Q 004636 495 --------SRAP------------EFF-P-VPI----ENHFYLRVQVKDSGSGISPQDIPN-LFTKFAQNQAIALRNSSG 547 (740)
Q Consensus 495 --------~~~~------------~~~-~-~~~----~~~~~v~i~V~D~G~GI~~e~l~~-iF~~F~~~~~~~~~~~~G 547 (740)
.... ... + ... ..-..-.+.+.|+|.||+.+.... +|.+|-+......+.++|
T Consensus 372 l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~g 451 (786)
T KOG0519|consen 372 LLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGG 451 (786)
T ss_pred HHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCC
Confidence 0000 000 0 000 001124567899999999999888 999999998888888999
Q ss_pred cchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeCCCC
Q 004636 548 SGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE 589 (740)
Q Consensus 548 tGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~~~~ 589 (740)
+|+|+.+|+.+++.|+|.+.+.+. .+.|++|+|.+++....
T Consensus 452 t~~~~~i~~~l~~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~ 492 (786)
T KOG0519|consen 452 TGLGESIVFSLVELMSGEISDISC-ISLGKTFSFTLDLLTNL 492 (786)
T ss_pred CcccchhhccHHHHHHHHhhhhhh-hccCceeeEEEEeccCC
Confidence 999999999999999999999998 57899999998886543
No 61
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.59 E-value=2.2e-14 Score=146.65 Aligned_cols=118 Identities=15% Similarity=0.324 Sum_probs=103.5
Q ss_pred ceEEeecCchHHHHHHHHHHHh-cCCe-EEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLH-LGCD-VMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~-~g~~-v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.+||||||++..+..+...|+. .|+. +..+.++.++++.+. ..||+|++|+.||+++|+++++.||+. .+..+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~----~~~~~ 80 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA----HYPGD 80 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhc----CCCCC
Confidence 6899999999999999999986 4785 568999999999874 579999999999999999999999742 23356
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
||++|+..+.+...+++++||++|+.||++.++|...++++..++
T Consensus 81 iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred EEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999998875443
No 62
>PLN03029 type-a response regulator protein; Provisional
Probab=99.58 E-value=2.1e-14 Score=146.29 Aligned_cols=119 Identities=23% Similarity=0.463 Sum_probs=103.0
Q ss_pred CCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-C--------------------CCeEEEEecCCCCCC
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-H--------------------EHQVVFMDVCVPGID 669 (740)
Q Consensus 611 ~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~--------------------~~dlvl~D~~mp~~d 669 (740)
..++||||||++.++..+..+|+..||.+..+.++.++++.+. . .+|+||+|+.||+|+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3468999999999999999999999999999999999998773 2 257999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHH
Q 004636 670 GYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 670 G~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l 731 (740)
|+++++.||+.. .....|||++|+........+|+++|+++|+.||++..+|...+..++
T Consensus 87 G~e~l~~ir~~~--~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 87 GYDLLKKIKESS--SLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred HHHHHHHHHhcc--ccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 999999997532 123467888999999999999999999999999999999977665544
No 63
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-10 Score=125.95 Aligned_cols=325 Identities=18% Similarity=0.232 Sum_probs=203.5
Q ss_pred HHhhhhhHHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCCCCcceecCCc
Q 004636 132 EMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQL 211 (740)
Q Consensus 132 e~~~~~~~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (740)
+.+..+++.+....+|.-++.+-.+-.....++.....+....++....+.+.+.++......+..
T Consensus 234 KT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~-------------- 299 (574)
T COG3850 234 KTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAE-------------- 299 (574)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhcc--------------
Confidence 344455555666778999999999999999999999988888888766665544333221111110
Q ss_pred hhHHHHhhcCCceEecCCCccccccccccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhh
Q 004636 212 PVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVH 291 (740)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~ 291 (740)
......+ +.+ .+ ... | ...| +...+..++++.. .+.....
T Consensus 300 ---------~~di~~~-d~~-----------~~-~~~----~---------~~~~-l~~~g~~Lg~l~~----~~~l~~~ 339 (574)
T COG3850 300 ---------QWDISEG-DQP-----------SG-LKW----P---------QEDP-LTQQGHLLGTLPW----QRSLPED 339 (574)
T ss_pred ---------CcceecC-CCC-----------cc-cch----h---------hhcc-hhhhhhhheeeec----cCCCCCc
Confidence 0000000 000 00 000 0 0001 1222333344333 4556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHH----HHH
Q 004636 292 ELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIA----LSS 367 (740)
Q Consensus 292 ~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~g----~~~ 367 (740)
+..+++.++.+++.++...+..++.++ |- ..+.| +.|+.||.-.|+-... ...
T Consensus 340 d~~Ll~tl~~~L~rtL~~~~~q~~~qQ-----------Ll--------lmEER----atIAReLHDSiAQsLS~LkiQvt 396 (574)
T COG3850 340 DQQLLDTLVQQLGRTLALNKQQEQQQQ-----------LL--------LMEER----ATIARELHDSIAQSLSFLKIQVT 396 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH--------HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988865443322110 11 11122 2344455544444443 444
Q ss_pred HHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEEE
Q 004636 368 LLQET---ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALN 444 (740)
Q Consensus 368 lL~~~---~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~~ 444 (740)
+|+.. ...++.++.+..|++..+---+-+.++|.--|+. .+.-++..-++++++.++.. .++.++++
T Consensus 397 ~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRlt-------L~e~~L~~AL~~~~~~f~~q---tg~~~~l~ 466 (574)
T COG3850 397 LLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLT-------LQEAELPPALEQMLAEFSNQ---TGITVTLD 466 (574)
T ss_pred HHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccCchHHHHHHHHHHHHhc---cCCeEEEe
Confidence 55532 3445667888888888888888888888766643 34567788888888888754 34444443
Q ss_pred eCCCCCccee-c-cHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCC
Q 004636 445 LAPDLPEYAV-G-DEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGI 522 (740)
Q Consensus 445 ~~~~~p~~v~-~-D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI 522 (740)
..+|.... . -...+-||+..=++||+||+....|.+++.... ..+.+.|.|||+||
T Consensus 467 --~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~--------------------g~~~~~VeDnG~Gi 524 (574)
T COG3850 467 --YQLPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND--------------------GQVTLTVEDNGVGI 524 (574)
T ss_pred --ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC--------------------CeEEEEEeeCCcCC
Confidence 33333221 1 235678899999999999999888888765432 24889999999999
Q ss_pred CcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEE
Q 004636 523 SPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK 584 (740)
Q Consensus 523 ~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~ 584 (740)
|+.. ..+| =-||.|-+.=++..||.+.+++. +|+||.+.++++
T Consensus 525 ~~~~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~-~~gGT~V~ltf~ 567 (574)
T COG3850 525 DEAA-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRR-EGGGTEVSLTFP 567 (574)
T ss_pred CCcc-----------------CCCC-CcchHHHHHHHHHhcCeEEEeec-CCCCeEEEEEec
Confidence 9852 1233 57999999999999999999998 688999888765
No 64
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.54 E-value=1.4e-13 Score=139.81 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=105.9
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++++|+. .+..|||+
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~----~~~~pii~ 77 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSN----DVSLPILV 77 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc----CCCCCEEE
Confidence 7999999999999999999999999999999999998774 578999999999999999999998642 34567888
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|+..+.+....++++|+++|+.||++.++|...+..++++
T Consensus 78 ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988765
No 65
>PRK11173 two-component response regulator; Provisional
Probab=99.53 E-value=1.7e-13 Score=140.91 Aligned_cols=116 Identities=23% Similarity=0.425 Sum_probs=105.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||+|||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.||+ . +.+|||
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~----~-~~~pii 78 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELRE----Q-ANVALM 78 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHhc----C-CCCCEE
Confidence 47999999999999999999999999999999999998774 57899999999999999999999863 1 346688
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+......++++|+++|+.||++.++|...+++++++
T Consensus 79 ~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r 120 (237)
T PRK11173 79 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 899999998899999999999999999999999999988765
No 66
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.53 E-value=1.7e-13 Score=139.31 Aligned_cols=116 Identities=16% Similarity=0.312 Sum_probs=104.4
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||+|||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|++++++||+ .+..|+|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~-----~~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ-----WSAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHc-----CCCCCEE
Confidence 37999999999999999999999999999999999998764 57899999999999999999999963 1345688
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+.+...+++++|+++|+.||++.++|...++.+++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999988764
No 67
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.53 E-value=1.2e-13 Score=154.10 Aligned_cols=115 Identities=23% Similarity=0.397 Sum_probs=88.3
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhh
Q 004636 455 GDEKRLMQTLLNVVGNAVKFTKEG----NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530 (740)
Q Consensus 455 ~D~~~L~qVl~NLl~NAik~t~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~i 530 (740)
++...|.|++.||++||++|++.+ .|.+.+..... +...+.|+|.|||+||++++++++
T Consensus 32 ~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~-----------------~~~~~~I~V~DNG~GIp~e~l~~i 94 (535)
T PRK04184 32 NPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDE-----------------GKDHYRVTVEDNGPGIPPEEIPKV 94 (535)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccC-----------------CCcEEEEEEEcCCCCCCHHHHHHH
Confidence 466889999999999999999764 35554432110 122578999999999999999999
Q ss_pred hhccccccccc--CCCCCCcchhHHHHHHHHHHcCCE-EEEEeecCCceE-EEEEEEEeCC
Q 004636 531 FTKFAQNQAIA--LRNSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGC-TAIFIVKLGI 587 (740)
Q Consensus 531 F~~F~~~~~~~--~~~~~GtGLGLaI~k~iv~~~gG~-I~v~S~~~g~G~-~~~~~l~l~~ 587 (740)
|++|+++.... ....+|+||||++|+.+++.|+|. +++.|.. |+|+ +|+|.+++..
T Consensus 95 F~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~-~~g~~~~~~~l~id~ 154 (535)
T PRK04184 95 FGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISST-GGSKKAYYFELKIDT 154 (535)
T ss_pred hhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEec-CCCceEEEEEEEecc
Confidence 99987654322 123467999999999999999997 9999984 5565 7888887654
No 68
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.52 E-value=2.2e-13 Score=138.96 Aligned_cols=116 Identities=20% Similarity=0.380 Sum_probs=105.3
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVAL 693 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~l 693 (740)
+||+|||++..+..+...|+..|+.+..+.++.+++..+...||+|++|+.||+++|+++++.||+. .+ .|||++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~d~vl~d~~~~~~~g~~~~~~l~~~----~~-~~ii~l 77 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTLKELRQT----HQ-TPVIML 77 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhcCCCEEEEeCCCCCCcHHHHHHHHHhc----CC-CcEEEE
Confidence 7999999999999999999989999999999999999876679999999999999999999999742 23 678889
Q ss_pred ecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 694 TGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|+..+......++++|+++|+.||++.++|...++.++++.
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 99988888899999999999999999999999999987654
No 69
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.52 E-value=2.4e-13 Score=138.55 Aligned_cols=116 Identities=15% Similarity=0.301 Sum_probs=105.4
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+||++||++..+..+...|+..|+.+..+.++.++++.+. ..||+|++|+.||+++|+++++.+|+. .+.+|||+
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~~~~~~g~~~~~~lr~~----~~~~pii~ 77 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSA----NKGMPILL 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc----CCCCCEEE
Confidence 7999999999999999999999999999999999998764 578999999999999999999998742 34567888
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|+..+.+...+++++|+++|+.||++.++|...++.+++.
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 70
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.52 E-value=2.9e-14 Score=142.59 Aligned_cols=114 Identities=18% Similarity=0.404 Sum_probs=100.3
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+|+||||+..+...+..+|++.|..+..++...+|++.+ ...|||||+|+.||+|||+|+++++|.. .+..+||+
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i----~~~v~iif 77 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDI----ESAVPIIF 77 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCCCEEEEEeecCCccHHHHHHHHHHh----hccCcEEE
Confidence 799999999999999999999998888999999999987 5689999999999999999999999754 35677999
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|++..... .++....+||+.||++++.|..+|.+.+.+
T Consensus 78 Issh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 78 ISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred Eecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 999876654 445566799999999999999999998754
No 71
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.51 E-value=2.1e-13 Score=140.74 Aligned_cols=114 Identities=14% Similarity=0.375 Sum_probs=100.2
Q ss_pred ceEEeecCchHHHHHHHHHHHh-cCCeEE-EeCCHHHHHHHHC---CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCC
Q 004636 613 LKVLVMDENGVSRSVTKGLLLH-LGCDVM-TVSSVEECFRVVS---HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHER 687 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~-~g~~v~-~a~~g~eal~~~~---~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~ 687 (740)
++||||||++..+..+..+|++ .|+.+. .+.++.++++.+. ..||+||+|+.||++||+++++.|++. .+.
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~----~~~ 77 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA----GCK 77 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh----CCC
Confidence 4799999999999999999986 477655 7899999998763 468999999999999999999999742 345
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 688 PLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 688 ~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
.|||++|++.+.....+++++|+++|+.||++.++|...+.++
T Consensus 78 ~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 78 SDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999864
No 72
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.51 E-value=3.6e-13 Score=136.57 Aligned_cols=116 Identities=22% Similarity=0.409 Sum_probs=104.7
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||+|||++..+..+...|+..|+.+..+.++.++++.+. ..||+|++|..||+++|+++++.+|+. +.+|+|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~-----~~~~ii 77 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSR-----STVGII 77 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhC-----CCCCEE
Confidence 47999999999999999999999999999999999998774 578999999999999999999999742 346788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+.....+++++|++||+.||++.++|...+..++++
T Consensus 78 ~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 78 LVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred EEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999887654
No 73
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.50 E-value=4.4e-13 Score=135.59 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=105.3
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
++||+|||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.+++. .+..|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~----~~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQK----KYTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhc----CCCCcEE
Confidence 37999999999999999999999999999999999998774 578999999999999999999998642 3456788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+......++++|+++|+.||++.++|...++.+++.
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999987754
No 74
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.50 E-value=4.7e-13 Score=137.59 Aligned_cols=117 Identities=20% Similarity=0.403 Sum_probs=106.5
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+|||+||++..+..+...|+..|+++..+.++.++++.+. ..||+|++|..||+++|+++++.||+. .+.+|||
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~----~~~~pii 81 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQ----NNPTPII 81 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCCCCEE
Confidence 58999999999999999999999999999999999998774 578999999999999999999999742 3456788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+......++++|+++|+.||++.++|...++.++++
T Consensus 82 ~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 82 MLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999998765
No 75
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.49 E-value=5.3e-13 Score=136.18 Aligned_cols=119 Identities=16% Similarity=0.273 Sum_probs=106.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||+|||++..+..+...|+..|+++..+.++.++++.+. ..||+|++|+.||+++|+++++.+++.. ..+..|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~--~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRES--MTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcc--ccCCCCEE
Confidence 47999999999999999999989999999999999999774 5789999999999999999999997531 23456788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+.....+++++|+++|+.||++.++|.+.++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999988754
No 76
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.49 E-value=6.4e-13 Score=134.23 Aligned_cols=117 Identities=19% Similarity=0.338 Sum_probs=105.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
++||||||++..+..+...|+..|+++..+.++.+++..+. ..||+|++|+.||+++|+++++.|++ ..+.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~i~~----~~~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWRE----KGQREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHh----cCCCCcEE
Confidence 37999999999999999999999999999999999998774 57899999999999999999999964 23556788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+......++++|+++|+.||++.++|...++.+++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 899999998889999999999999999999999999887753
No 77
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.49 E-value=5.6e-13 Score=135.30 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=106.1
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCC-e-EEEeCCHHHHHHHHC-CCCeEEEEecCCCC---CCHHHHHHHHHHhhccCC
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGC-D-VMTVSSVEECFRVVS-HEHQVVFMDVCVPG---IDGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~-~-v~~a~~g~eal~~~~-~~~dlvl~D~~mp~---~dG~e~~~~Ir~~~~~~~ 685 (740)
+++||||||++..+..++..|+..++ . +..+.++.++++.+. ..||+||+|+.||+ ++|++++++|++. .
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~----~ 78 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRH----F 78 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH----C
Confidence 36899999999999999999987665 3 557899999998774 57999999999999 5999999999642 3
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccccc
Q 004636 686 ERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLF 737 (740)
Q Consensus 686 ~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~~~ 737 (740)
+.++||++|+..+......++++|+++|+.||.+.++|..+++.+..+..++
T Consensus 79 ~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~ 130 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFT 130 (216)
T ss_pred CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeec
Confidence 5567899999999988899999999999999999999999999988776543
No 78
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.49 E-value=3.4e-13 Score=122.20 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=103.5
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+.||||||..+...+.+.+++.||.|.++.+.+|++...+ ..|...++|+.|.+.+|+++++.||. ..+...||+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~----~~~d~rivv 86 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRE----RRADMRIVV 86 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHh----cCCcceEEE
Confidence 6899999999999999999999999999999999999885 57899999999999999999999974 345567899
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
+|++.+....+++.+.||++|+.||-+.+++..++.+-
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 99999999999999999999999999999998887654
No 79
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.48 E-value=6.3e-13 Score=134.73 Aligned_cols=119 Identities=19% Similarity=0.350 Sum_probs=106.0
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+|||+||++..+..+...|+..|+++..+.++.+++..+. ..||+|++|+.||+++|+++++.||+.. ..+..|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~--~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRP--ETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccc--cCCCCCEE
Confidence 47999999999999999999989999999999999998774 5789999999999999999999996432 13456788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+......++++|+++|+.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 899999998999999999999999999999999999988765
No 80
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.48 E-value=6.3e-13 Score=137.13 Aligned_cols=115 Identities=22% Similarity=0.311 Sum_probs=101.9
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+||+|||++..+..+...|+..||.+..+.++.++++.+. ..||+|++|+.||+++|+++++.||+. ...|||+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~l~~~i~~~-----~~~pii~ 77 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLNLGREDGLEIVRSLATK-----SDVPIII 77 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc-----CCCcEEE
Confidence 7999999999999999999999999999999999998774 578999999999999999999998641 2456888
Q ss_pred EecC-CCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGS-TDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~-~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|+. .+.....+++++|+++|+.||++.++|...++.+++.
T Consensus 78 lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 78 ISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred EECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 8885 4666778999999999999999999999999988765
No 81
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.48 E-value=7.1e-13 Score=136.45 Aligned_cols=115 Identities=19% Similarity=0.285 Sum_probs=103.4
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.||+. . ..|+|+
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir~~----~-~~pii~ 77 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRPK----W-QGPIVL 77 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc----C-CCCEEE
Confidence 7999999999999999999999999999999999999874 578999999999999999999999752 2 346777
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|+..+.....+++++|++||+.||++.++|...++..++.
T Consensus 78 l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 78 LTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 89888888888999999999999999999999999987754
No 82
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.47 E-value=9.7e-13 Score=137.70 Aligned_cols=119 Identities=19% Similarity=0.351 Sum_probs=103.6
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++||||||++..+..+...|+.. ++.+. .+.++.++++.+. ..||+|++|+.||++||+++++++++.. ....+|
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~~~l~~i~~~~--~~~~~~ 80 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIE--LSARPR 80 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhc--cccCCe
Confidence 58999999999999999999854 55655 7899999999874 5789999999999999999999997532 223478
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
||++|+........++++.|+++|+.||++.++|...+++++..
T Consensus 81 iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 81 VIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999988754
No 83
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.47 E-value=1.3e-12 Score=132.33 Aligned_cols=117 Identities=16% Similarity=0.362 Sum_probs=104.9
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
++||+|||++..+..+...|+..|+.+..+.++.+++..+ ...||+|++|+.||+++|+++++.+|+. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~-----~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA-----KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHcC-----CCCCEE
Confidence 3799999999999999999999999999999999999877 4578999999999999999999998642 245688
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
++|+..+.+...+++++|+++|+.||++.++|...++..+.+.
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 8999999999999999999999999999999999999887653
No 84
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.46 E-value=1.2e-12 Score=133.32 Aligned_cols=117 Identities=15% Similarity=0.274 Sum_probs=104.6
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCC--CCHHHHHHHHHHhhccCCCCceE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPG--IDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~--~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
+||++||++..+..+...|+..||++..+.++.+++..+. ..||+|++|+.||+ ++|+++++.+++. .+..||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~----~~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSL----SATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCCCCE
Confidence 6999999999999999999999999999999999998774 57999999999998 5899999998642 344678
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|++|+..+......++++|+++|+.||++.++|...++.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999999999887653
No 85
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.45 E-value=1.9e-12 Score=129.46 Aligned_cols=119 Identities=14% Similarity=0.395 Sum_probs=105.7
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
++||++||++..+..+...|+..|+.+. .+.++.++++.+. ..||+|++|..||+++|+++++.+++. .+..||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~----~~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR----QYSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHhh----CCCCeE
Confidence 3799999999999999999998899987 6999999998774 578999999999999999999988642 344568
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
|++|+..+......++++|+++|+.||++.++|...++.++.+..
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~ 121 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 121 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCc
Confidence 889999998899999999999999999999999999999887644
No 86
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.45 E-value=1.7e-12 Score=131.93 Aligned_cols=118 Identities=18% Similarity=0.279 Sum_probs=105.6
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||||||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.||+. .+..|||
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~----~~~~~ii 79 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLLAF----HPALPVI 79 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhh----CCCCCEE
Confidence 47999999999999999999989999999999999998774 578999999999999999999999742 2456788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
++|+..+......++++|+++|+.||++.++|...++.++++.
T Consensus 80 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 80 FLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 8999988888889999999999999999999999999887653
No 87
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.44 E-value=2.3e-12 Score=129.85 Aligned_cols=116 Identities=19% Similarity=0.366 Sum_probs=104.5
Q ss_pred EEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEE
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVAL 693 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~l 693 (740)
||++||++..+..+...|+..|+.+..+.++.+++..+ ...||+|++|+.||+++|+++++.+++. .+..|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~----~~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRS----GKQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCCCcEEEE
Confidence 58999999999999999999999999999999999877 4578999999999999999999998642 345678889
Q ss_pred ecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 694 TGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|+..+.....+++++|+++|+.||++.++|...++.++++.
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999887654
No 88
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.43 E-value=1.7e-12 Score=115.35 Aligned_cols=109 Identities=40% Similarity=0.636 Sum_probs=89.9
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhc
Q 004636 455 GDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTK 533 (740)
Q Consensus 455 ~D~~~L~qVl~NLl~NAik~t~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~ 533 (740)
+|+..|.+++.|+++||++++.. +.+.+.+.... ..+.+.|.|+|.|++++..+++|.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~--------------------~~~~i~i~d~g~g~~~~~~~~~~~~ 60 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDG--------------------DHLEITVEDNGPGIPPEDLEKIFEP 60 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcC--------------------CEEEEEEEeCCCCCCHHHHHHHhcC
Confidence 47889999999999999999886 66666554321 2478999999999999999999999
Q ss_pred ccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEe
Q 004636 534 FAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (740)
Q Consensus 534 F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l 585 (740)
+++.+. ......+.|+||++|+++++.|+|++++.+. .+.|+++++.+|+
T Consensus 61 ~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~~~ 110 (111)
T smart00387 61 FFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESE-PGGGTTFTITLPL 110 (111)
T ss_pred eEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEeeC
Confidence 987653 2233568999999999999999999999886 4678888888775
No 89
>PRK14084 two-component response regulator; Provisional
Probab=99.43 E-value=2.5e-12 Score=133.12 Aligned_cols=115 Identities=20% Similarity=0.387 Sum_probs=97.9
Q ss_pred ceEEeecCchHHHHHHHHHHHhcC-C-eEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLG-C-DVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g-~-~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++||||||++..+..+..+|+..+ + .+..+.++.+++..+. ..||++++|+.||++||++++++||+ ..+.++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~dlv~lDi~m~~~~G~~~~~~i~~----~~~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDINLMDESGIELAAKIQK----MKEPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh----cCCCCE
Confidence 479999999999999999998765 4 4668999999998774 57899999999999999999999964 234567
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
||++|++.. ...++++.|+++|+.||++.++|.+.+.++.+.
T Consensus 77 iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 77 IIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888888654 456889999999999999999999999987643
No 90
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.43 E-value=3.1e-12 Score=131.24 Aligned_cols=118 Identities=26% Similarity=0.453 Sum_probs=105.6
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
.++||++||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.+++. +..||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~-----~~~~i 80 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRKE-----SDVPI 80 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc-----CCCcE
Confidence 468999999999999999999999999999999999998774 578999999999999999999998642 34678
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|++|++.+......++++|+++|+.||++.++|...++.+++..
T Consensus 81 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 81 IMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 88999999888899999999999999999999999999887553
No 91
>PRK09483 response regulator; Provisional
Probab=99.42 E-value=3.7e-12 Score=128.65 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=106.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++|||+||++..+..+...|+.. |+.+. .+.++.+++..+. ..||+|++|+.||+++|+++++.+++. .+..|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~----~~~~~ 77 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRY----TPDVK 77 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH----CCCCe
Confidence 47999999999999999999874 88876 7899999998774 578999999999999999999998642 35577
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVL 736 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~~ 736 (740)
||++|...+......++..|+++|+.||++.++|...+++++.+..+
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~ 124 (217)
T PRK09483 78 IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRY 124 (217)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcc
Confidence 89999999998889999999999999999999999999998877543
No 92
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.41 E-value=1.4e-12 Score=148.11 Aligned_cols=130 Identities=21% Similarity=0.263 Sum_probs=90.1
Q ss_pred hcCeEEEEEeCCCCCcce-eccHHHHHHHHHHHHHHHhhcCCCCe----EEEEEEEecccccccCCCCCCcCCCCCCceE
Q 004636 436 VKKLLVALNLAPDLPEYA-VGDEKRLMQTLLNVVGNAVKFTKEGN----ISITGFVAKSESLRDSRAPEFFPVPIENHFY 510 (740)
Q Consensus 436 ~k~i~l~~~~~~~~p~~v-~~D~~~L~qVl~NLl~NAik~t~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (740)
.+.+.+..-+..+.+..- -.|...|.+++.|||+||++|++.+. |.|.+.. . +.+
T Consensus 22 ~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~--~------------------g~~ 81 (795)
T PRK14868 22 QREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE--V------------------GDY 81 (795)
T ss_pred ccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--C------------------CCE
Confidence 355556555555443322 23577899999999999999998653 4444321 1 124
Q ss_pred EEEEEEecCCCCCcCChhhhhhcccccccc----cCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 511 LRVQVKDSGSGISPQDIPNLFTKFAQNQAI----ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 511 v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~----~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
+.|.|.|||+||++++++++|++|+++... ..++..|.|||+++|...+ .+||.+++.|...|.+..+.+.+.+.
T Consensus 82 v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 82 YRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 789999999999999999999999865421 2244567888888887777 47999999998544444444444443
No 93
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.40 E-value=3.8e-12 Score=128.69 Aligned_cols=117 Identities=11% Similarity=0.163 Sum_probs=96.4
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeE-EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHH-HHHHHhhccCCCCceE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDV-MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVA-VHIHDKFTRRHERPLI 690 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v-~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~-~~Ir~~~~~~~~~~~I 690 (740)
.++++|||+|..+..++.+|+. ++.+ ..+.++.++++.+. +||+||+|+.||++||++++ +.|++ ..+..+|
T Consensus 11 ~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~-~~DvvllDi~~p~~~G~~~~~~~i~~----~~p~~~v 84 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS-SGSIILLDMMEADKKLIHYWQDTLSR----KNNNIKI 84 (216)
T ss_pred ceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC-CCCEEEEECCCCCccHHHHHHHHHHH----hCCCCcE
Confidence 4799999999999999999984 5654 47789999998754 48999999999999999997 45653 3455779
Q ss_pred EEEecCCCHHHHHHHHH--cCCCeEEECCCCHHHHHHHHHHHHcccccc
Q 004636 691 VALTGSTDNLTKDNCMR--VGMDGVILKPVSLEKMRSVLSDLLEHRVLF 737 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~--~Ga~~~i~KP~~~~~L~~~l~~~l~~~~~~ 737 (740)
|++|+..+. ...++. +||.+|+.|+.+.++|.++|+.++++..++
T Consensus 85 vvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~ 131 (216)
T PRK10100 85 LLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYF 131 (216)
T ss_pred EEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCccc
Confidence 999998763 334555 599999999999999999999999887654
No 94
>PRK15115 response regulator GlrR; Provisional
Probab=99.40 E-value=2.8e-12 Score=144.79 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=106.6
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||||||++.++..+...|+..||.+..+.++.+|+..+. ..||+||+|+.||+++|+++++++++ ..+.+|||
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~~dlvilD~~lp~~~g~~ll~~l~~----~~~~~pvI 81 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLRMDEMDGMQLFAEIQK----VQPGMPVI 81 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHh----cCCCCcEE
Confidence 58999999999999999999999999999999999999875 57899999999999999999998864 24556788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+.....+++++|+++|+.||++.++|...+.++++.
T Consensus 82 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 82 ILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 899999998999999999999999999999999999988754
No 95
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.39 E-value=4.2e-12 Score=144.40 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=106.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||||||++..+..+...|+..||.+..+.++.+++..+. ..||+||+|+.||++||++++++|++. .+..|+|
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~~DlvllD~~lp~~dgl~~l~~ir~~----~~~~pvI 79 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQR----HPMLPVI 79 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEECCCCCCCCHHHHHHHHHhh----CCCCeEE
Confidence 47999999999999999999999999999999999999875 578999999999999999999999742 3556788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|++.+.+....++++|+++|+.||++.+++...+.+++..
T Consensus 80 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred EEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999887653
No 96
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.39 E-value=4.3e-12 Score=143.82 Aligned_cols=118 Identities=17% Similarity=0.349 Sum_probs=106.4
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||||||++..+..+...|+..||.+..+.++.+++..+. ..||+|++|+.||+++|+++++.+++. .+.+|||
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlillD~~~p~~~g~~ll~~i~~~----~~~~pvI 80 (457)
T PRK11361 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSH----ETRTPVI 80 (457)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCCCCEE
Confidence 47999999999999999999999999999999999999874 578999999999999999999998642 3556788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
++|++.+.+...++++.|++||+.||++.++|...+.++++.+
T Consensus 81 ~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred EEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcccc
Confidence 8999999999999999999999999999999999998876543
No 97
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.39 E-value=9.6e-12 Score=124.60 Aligned_cols=119 Identities=15% Similarity=0.279 Sum_probs=104.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.+|||+||++..+..+...|+.. ++.+. .+.++.+++..+. ..||+|++|+.||+++|.++++.+++. .+..|
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~----~~~~~ 79 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQI----QSTVK 79 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh----CCCCc
Confidence 47999999999999999999876 57776 6889999998764 578999999999999999999998742 34467
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
||++|+..+.....++++.|+++|+.||++.++|...++.++.+..
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~ 125 (210)
T PRK09935 80 VLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYT 125 (210)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCc
Confidence 8889999888888999999999999999999999999998877643
No 98
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.38 E-value=8.5e-12 Score=123.85 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=101.0
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCe-EEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCD-VMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.+||||||++..+..+...|+.. |+. +..+.++.++++.+. ..||+|++|+.||+++|+++++.++ +..|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~-------~~~~ 74 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLP-------KGMA 74 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHc-------cCCC
Confidence 37999999999999999999754 665 457899999999874 5789999999999999999998774 1346
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
||++|...+.+....+++.|+++|+.||++.++|..+++.++++..
T Consensus 75 vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~ 120 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120 (196)
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCe
Confidence 8889999999999999999999999999999999999999887643
No 99
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=3.1e-12 Score=144.36 Aligned_cols=118 Identities=19% Similarity=0.338 Sum_probs=106.8
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
.++||||||++..+..+...|+..|+.+..+.++.+++..+. ..||+||+|+.||+++|++++++||+. .+.+||
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~DlvilD~~m~~~~G~~~~~~ir~~----~~~~~v 80 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKAL----NPAIPV 80 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhh----CCCCeE
Confidence 368999999999999999999999999999999999999774 568999999999999999999999753 355789
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
|++|++.+.+...++++.|+.+|+.||++.++|...+.+.++.
T Consensus 81 i~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 81 LIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653
No 100
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.38 E-value=1.9e-12 Score=146.04 Aligned_cols=119 Identities=13% Similarity=0.240 Sum_probs=104.4
Q ss_pred CCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 611 ~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
...+||+|||++..+..+..+|.. ++.+..+.++.+++..+. ..||+|++|+.||+|||++++++||+.. ..+..|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~~d~vi~d~~~p~~~g~~l~~~i~~~~--~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETNYDLVIVSANFENYDPLRLCSQLRSKE--RTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCCCCEEEecCCCCCchHhHHHHHHHhcc--ccCCCc
Confidence 345899999999999999999965 577788999999999774 5789999999999999999999997532 235677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
||++|++.+.+...+|++.|++||+.||+++++|...+...++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877554
No 101
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.38 E-value=7.1e-12 Score=128.97 Aligned_cols=113 Identities=25% Similarity=0.366 Sum_probs=95.4
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCC-e-EEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGC-D-VMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~-~-v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++|+||||++..+..+...|+..|. . +..+.++.+++..+. ..||++|+|+.||++||+++++.++. ...++
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~dlv~lDi~~~~~~G~~~~~~l~~-----~~~~~ 76 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLKPDVVFLDIQMPRISGLELVGMLDP-----EHMPY 76 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHhcc-----cCCCE
Confidence 4799999999999999999998773 4 346899999998774 57899999999999999999988742 23456
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
||++|++. +...++++.|+.+|+.||++.++|...+.++.+
T Consensus 77 ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 77 IVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred EEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 88888865 356788999999999999999999999988764
No 102
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.37 E-value=5.1e-12 Score=142.71 Aligned_cols=113 Identities=16% Similarity=0.275 Sum_probs=101.2
Q ss_pred EEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCC-----CCHHHHHHHHHHhhccCCCCc
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPG-----IDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~-----~dG~e~~~~Ir~~~~~~~~~~ 688 (740)
||||||++..+..+...| .||++..+.|+.+|++.+. ..||+||+|+.||+ +||+++++++++ ..+..
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~----~~~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILA----IAPDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHh----hCCCC
Confidence 689999999999999888 6999999999999999884 57899999999996 899999998864 34567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 689 ~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
|||++|+..+.+...+++++|++||+.||++.++|...++++++.
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 788999999999999999999999999999999999999877653
No 103
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.35 E-value=8e-12 Score=141.88 Aligned_cols=114 Identities=23% Similarity=0.361 Sum_probs=103.8
Q ss_pred EEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEE
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVAL 693 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~l 693 (740)
||||||++..+..+...|+..||.+..+.++.+++..+. ..||+|++|+.||+++|++++++|++. .+.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlVllD~~~p~~~g~~ll~~l~~~----~~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKKR----HPQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHHh----CCCCeEEEE
Confidence 689999999999999999999999999999999999874 578999999999999999999999752 355678889
Q ss_pred ecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 694 TGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
|++.+.....+++++|+++|+.||++.++|...++++++
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764
No 104
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.35 E-value=5.5e-12 Score=103.17 Aligned_cols=66 Identities=42% Similarity=0.749 Sum_probs=61.3
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQE-TELTPEQ-RLMVETILKSSNLLATLINDVLDLSRLEDG 408 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~-~~l~~~~-~~~l~~i~~~~~~l~~lI~~lLd~srle~g 408 (740)
+|++|++.+||||||||++|.++++++.+ ...++++ +++++.|..+++++.++++++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 36789999999999999999999999998 7788888 999999999999999999999999999886
No 105
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.34 E-value=2.7e-11 Score=124.28 Aligned_cols=115 Identities=18% Similarity=0.323 Sum_probs=103.5
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+||++||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|..||+++|+++++.|++ .+.+|+|+
T Consensus 12 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~-----~~~~pii~ 86 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRR-----FSDIPIVM 86 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHh-----cCCCCEEE
Confidence 7999999999999999999999999999999999999774 56899999999999999999999863 23467888
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+++..+......++++|+++|+.||++.++|...++.++++
T Consensus 87 l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 87 VTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred EEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 99988888888999999999999999999999999887754
No 106
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.33 E-value=1.5e-11 Score=123.52 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=90.8
Q ss_pred HHHHHHHHHHh---cCCeEEEeCCHHHHHHHHC-CCCeEEE---EecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecC
Q 004636 624 SRSVTKGLLLH---LGCDVMTVSSVEECFRVVS-HEHQVVF---MDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGS 696 (740)
Q Consensus 624 ~~~~l~~~L~~---~g~~v~~a~~g~eal~~~~-~~~dlvl---~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~ 696 (740)
.|..+..+|+. .|+.+..+.+++++++.+. ..||++| +|+.||++||++++++|++. .+..+||++|+.
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~----~p~~~iIvlt~~ 77 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIK----FPRMRRLVIADD 77 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHH----CCCCCEEEEeCC
Confidence 36778888864 4666778999999999885 4789998 78899999999999999753 456678889998
Q ss_pred CCHHHHHHHH-HcCCCeEEECCCCHHHHHHHHHHHHcccccc
Q 004636 697 TDNLTKDNCM-RVGMDGVILKPVSLEKMRSVLSDLLEHRVLF 737 (740)
Q Consensus 697 ~~~~~~~~~l-~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~~~ 737 (740)
.++....+++ ++||++|+.||.+.++|.++|+.++++..++
T Consensus 78 ~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~ 119 (207)
T PRK11475 78 DIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQA 119 (207)
T ss_pred CCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCccc
Confidence 7776565555 7999999999999999999999998876544
No 107
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.33 E-value=3e-11 Score=121.98 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=103.7
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+||++||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.+++. .+.+|+|+
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~~~~~~~~~~~~~i~~~----~~~~~ii~ 77 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDINMPGMDGLEVLQRLRKR----GQTLPVLL 77 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcHHHHHHHHHhc----CCCCCEEE
Confidence 6999999999999999999989999999999999988764 578999999999999999999988642 34467888
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|...+.....+++++|+++|+.||++.+++.+.++.++++
T Consensus 78 lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 118 (221)
T PRK15479 78 LTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118 (221)
T ss_pred EECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhh
Confidence 99998888889999999999999999999999999887654
No 108
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.33 E-value=1.5e-11 Score=133.53 Aligned_cols=115 Identities=14% Similarity=0.231 Sum_probs=95.3
Q ss_pred ceEEeecCchHHHHHHHHHHH-hcCCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLL-HLGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~-~~g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++||||||++..+..+..+|+ ..|+++. .+.|+.++++.+. ..||+|++|+.||+|+|++++++|++. .+ .|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~pDlVllD~~mp~~~G~e~l~~l~~~----~~-~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQPPDVILMDLEMPRMDGVEATRRIMAE----RP-CP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----CC-Cc
Confidence 379999999999999999994 5688886 7899999999885 578999999999999999999999652 22 45
Q ss_pred EEEEecCCC--HHHHHHHHHcCCCeEEECCC---------CHHHHHHHHHHHHc
Q 004636 690 IVALTGSTD--NLTKDNCMRVGMDGVILKPV---------SLEKMRSVLSDLLE 732 (740)
Q Consensus 690 II~lt~~~~--~~~~~~~l~~Ga~~~i~KP~---------~~~~L~~~l~~~l~ 732 (740)
||++++... .....++++.|+++|+.||+ ..++|.+.++.+..
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 777777643 45566899999999999999 66777788777654
No 109
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.32 E-value=9.8e-12 Score=137.53 Aligned_cols=102 Identities=22% Similarity=0.375 Sum_probs=80.8
Q ss_pred eccHHHHHHHHHHHHHHHhhcCCC-C---eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhh
Q 004636 454 VGDEKRLMQTLLNVVGNAVKFTKE-G---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN 529 (740)
Q Consensus 454 ~~D~~~L~qVl~NLl~NAik~t~~-g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~ 529 (740)
.+|...|.|++.||++||++|+.. | .|.+..... +..++.|+|.|||+||+++++++
T Consensus 23 ~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-------------------g~~~~~I~V~DNG~GIp~edl~~ 83 (488)
T TIGR01052 23 SGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-------------------GKDHYKVTVEDNGPGIPEEYIPK 83 (488)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-------------------CCceEEEEEEECCCCCCHHHHHh
Confidence 468899999999999999999874 3 355543211 11246799999999999999999
Q ss_pred hhhccccccccc--CCCCCCcchhHHHHHHHHHHcCCE-EEEEeecCC
Q 004636 530 LFTKFAQNQAIA--LRNSSGSGLGLAICKRFVNLMEGH-IWIESEGLG 574 (740)
Q Consensus 530 iF~~F~~~~~~~--~~~~~GtGLGLaI~k~iv~~~gG~-I~v~S~~~g 574 (740)
+|++|++++... ....++.|+||++|+.+++.|+|+ +++.|...|
T Consensus 84 iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 84 VFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred hhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecCC
Confidence 999998776532 123478999999999999999998 999998433
No 110
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.31 E-value=2.4e-09 Score=110.35 Aligned_cols=240 Identities=18% Similarity=0.256 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHH
Q 004636 290 VHELELVEVVADQVA------VALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAII 363 (740)
Q Consensus 290 ~~~~~ll~~~a~q~a------~al~~a~l~~e~~~~~~~L~~~~~~l~~a~~~~e~~~~~k~~fla~iSHELRtPL~~I~ 363 (740)
.+..+++-.++.|.- +|+++ +.+-.++..+++.+ |+++.+. -...+...|++...-+-.|+-.-+|+|.
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqr--lrelnqrL~~EL~~-~raLaeq--ListEEsiRk~vARELHDeIGQnITAIr 322 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQR--LRELNQRLQKELAR-NRALAEQ--LISTEESIRKDVARELHDEIGQNITAIR 322 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hHHHHHH--HHhhHHHHHHHHHHHHHHHhcchHHHHH
Confidence 455666666776643 44544 22223333333332 2333222 2233335667777778888999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCeEEEE
Q 004636 364 ALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVAL 443 (740)
Q Consensus 364 g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i~l~~ 443 (740)
..+.+.++...++..++....|..-+.+...-+..+|.--| +-..++.-+.+.+..+++.++ ..++++.+.+
T Consensus 323 ~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~--~~ergihcq~ 394 (497)
T COG3851 323 TQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREME--LEERGIHCQL 394 (497)
T ss_pred HHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhh--hhhcCeEEEe
Confidence 99999988766777777788888888888888888876443 223456778889999988887 4678877777
Q ss_pred EeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCC
Q 004636 444 NLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGIS 523 (740)
Q Consensus 444 ~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~ 523 (740)
+...+....-..-+.-+.++...+++|-+||.+...|+|.....++ .+.++|+|||.|+|
T Consensus 395 ~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e--------------------~l~Lei~DdG~Gl~ 454 (497)
T COG3851 395 DWRINETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE--------------------RLMLEIEDDGSGLP 454 (497)
T ss_pred ccccCcccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc--------------------EEEEEEecCCcCCC
Confidence 6543321111112345788999999999999998888887654322 37899999999998
Q ss_pred cCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEE
Q 004636 524 PQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK 584 (740)
Q Consensus 524 ~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~ 584 (740)
+. .+-.|.||.=-++=|.+.||++..+|. .||++.+.+|
T Consensus 455 ~~-------------------~~v~G~Gl~GmrERVsaLGG~ltlssq---~GTrviVnLP 493 (497)
T COG3851 455 PG-------------------SGVQGFGLTGMRERVSALGGTLTLSSQ---HGTRVIVNLP 493 (497)
T ss_pred CC-------------------CCccCcCcchHHHHHHHhCCceEEEec---cCcEEEEecc
Confidence 73 245688888899999999999999996 4788777766
No 111
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.28 E-value=4.6e-11 Score=118.26 Aligned_cols=117 Identities=24% Similarity=0.317 Sum_probs=104.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
.+||++||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|..||+++|+++++.+++. .+.+|+|
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~~~~~~~~~~~~l~~~----~~~~~ii 79 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKAR----GSPLPVI 79 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCCCCEEEEeCCCCCCcHHHHHHHHHhc----CCCCCEE
Confidence 47999999999999999999989999999999999998774 568999999999999999999999642 3456788
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++|+..+......+++.|+++|+.||++.+++...+...++.
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 899998888899999999999999999999999988877654
No 112
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.26 E-value=7.3e-11 Score=129.19 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=94.8
Q ss_pred CceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCc
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~ 688 (740)
..+||||||++.++..+...|+.. |+.+. .+.|+.++++.+. ..||+|++|+.||++||++++++|++. .+ .
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~~DlVllD~~mp~~dgle~l~~i~~~----~~-~ 77 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLNPDVITLDVEMPVMDGLDALEKIMRL----RP-T 77 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhCCCEEEEeCCCCCCChHHHHHHHHHh----CC-C
Confidence 358999999999999999999876 88887 8999999999774 578999999999999999999999653 23 5
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCCeEEECCCCH---------HHHHHHHHHHHc
Q 004636 689 LIVALTGST--DNLTKDNCMRVGMDGVILKPVSL---------EKMRSVLSDLLE 732 (740)
Q Consensus 689 ~II~lt~~~--~~~~~~~~l~~Ga~~~i~KP~~~---------~~L~~~l~~~l~ 732 (740)
|||++|+.. ......++++.|+++|+.||++. ++|...++.+.+
T Consensus 78 piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~ 132 (354)
T PRK00742 78 PVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAAR 132 (354)
T ss_pred CEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhh
Confidence 688888753 34556789999999999999953 556666665543
No 113
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.26 E-value=9.5e-11 Score=118.03 Aligned_cols=119 Identities=17% Similarity=0.265 Sum_probs=96.9
Q ss_pred eEEeecCchHHHHHHHHHHHhcCC--e-EEEeCCHHHHHHHHC-CCCeEEEEecC--CCCCCHHHHHHHHHHhhccCCCC
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGC--D-VMTVSSVEECFRVVS-HEHQVVFMDVC--VPGIDGYEVAVHIHDKFTRRHER 687 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~--~-v~~a~~g~eal~~~~-~~~dlvl~D~~--mp~~dG~e~~~~Ir~~~~~~~~~ 687 (740)
.|+||||++..+..++.+|+..++ . +..++++.++++.+. ..||+||+|+. ||.+||.+++++|++. .+.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~----~p~ 77 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLRPSVVFINEDCFIHDASNSQRIKQIINQ----HPN 77 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChHHHHHHHHHH----CCC
Confidence 589999999999999999986653 3 347899999999775 57999999965 8888999999999743 455
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCe-EEECCCCHHHHHHHHHHHHcccccc
Q 004636 688 PLIVALTGSTDNLTKDNCMRVGMDG-VILKPVSLEKMRSVLSDLLEHRVLF 737 (740)
Q Consensus 688 ~~II~lt~~~~~~~~~~~l~~Ga~~-~i~KP~~~~~L~~~l~~~l~~~~~~ 737 (740)
.+||++|+..+..... ++..|++. |+.|+.++++|.++++.+..++.++
T Consensus 78 ~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~ 127 (207)
T PRK15411 78 TLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTI 127 (207)
T ss_pred CeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCccc
Confidence 6788899887765543 55666655 8899999999999999998877654
No 114
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.25 E-value=4.6e-11 Score=104.30 Aligned_cols=100 Identities=39% Similarity=0.607 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhcCC--CCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhccccc
Q 004636 460 LMQTLLNVVGNAVKFTK--EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQN 537 (740)
Q Consensus 460 L~qVl~NLl~NAik~t~--~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~ 537 (740)
+.+++.++++||++|+. .+.+.+...... ..+.|.|.|+|.|+++..+++.|.+|...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~--------------------~~~~v~i~d~g~g~~~~~~~~~~~~~~~~ 60 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDG--------------------DHLEIRVEDNGPGIPEEDLERIFERFSDG 60 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecC--------------------CEEEEEEEeCCCCCCHHHHHHHhhhhhcC
Confidence 36889999999999987 456666543221 24789999999999999999999987211
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEE
Q 004636 538 QAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI 582 (740)
Q Consensus 538 ~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~ 582 (740)
.......+.|+||++|+++++.|||++++.+. .+.|+++++.
T Consensus 61 --~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~ 102 (103)
T cd00075 61 --SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE-PGGGTTFTIT 102 (103)
T ss_pred --CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEE
Confidence 12233568999999999999999999999887 4567777654
No 115
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.24 E-value=9.9e-11 Score=132.12 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=105.2
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
+||++||++..+..+...|+..|+.+..+.++.+++..+. ..||+|++|+.||+++|+++++.|++.. ..+.+|||+
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~--~~~~~~ii~ 81 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDP--ATTHIPVVM 81 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCc--ccCCCCEEE
Confidence 7999999999999999999988999999999999999875 5789999999999999999999996421 224567899
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+|+..+.....+++++|+++|+.||++.++|..++.++++.
T Consensus 82 ~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 82 VTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
No 116
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.24 E-value=6.8e-11 Score=140.52 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=102.2
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
..+||||||++.++..+..+|...||.+..+.++.+++..+. ..||+||+|+.||+++|++++++||+ ..+..||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~lp~~~g~~~l~~l~~----~~~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGEIDCVVADHEPDGFDGLALLEAVRQ----TTAVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccCCCEEEEeccCCCCcHHHHHHHHHh----cCCCCCE
Confidence 358999999999999999999988999999999999999774 57899999999999999999999964 3455678
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEECCCCHH--HHHHHHHHHHcc
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLE--KMRSVLSDLLEH 733 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~--~L~~~l~~~l~~ 733 (740)
|++|+..+.+...++++.|+++|+.||.+.. .+...++..+..
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999998643 666666665543
No 117
>PRK13435 response regulator; Provisional
Probab=99.24 E-value=2e-10 Score=108.67 Aligned_cols=115 Identities=27% Similarity=0.339 Sum_probs=96.9
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCC-CCCHHHHHHHHHHhhccCCCCc
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVP-GIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp-~~dG~e~~~~Ir~~~~~~~~~~ 688 (740)
..+|||+||++.....+...|+..|+.+. .++++.++++.+. ..||+|++|..|+ +++|+++++.+++ .+..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~-----~~~~ 79 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSA-----DGGV 79 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHh-----CCCC
Confidence 46899999999999999999998899987 7899999998774 5789999999998 5899999988853 1345
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 689 ~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|+|+++...+ ...++.+|+++|+.||++.++|.+.|+++..++
T Consensus 80 pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 80 EVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred CEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 6888887543 346788999999999999999999999887654
No 118
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.23 E-value=3.7e-10 Score=102.05 Aligned_cols=120 Identities=21% Similarity=0.327 Sum_probs=102.4
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCe-EEEeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCD-VMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
..+++++|+++.....+...|+..|++ +..+.++.+++.... ..+|++++|..+|+++|+++++.+++.. ..+.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~l~d~~~~~~~~~~~~~~l~~~~--~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADG--AMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccCCCEEEEcCCCCCCCHHHHHHHHHhCC--CcCCCc
Confidence 468999999999999999999988985 678899999988764 5789999999999999999999886431 224456
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+++++..........+++.|+++|+.||++.+++...++++++.
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 77788888888888999999999999999999999999887643
No 119
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.23 E-value=2.6e-10 Score=114.46 Aligned_cols=118 Identities=20% Similarity=0.339 Sum_probs=102.5
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.+||||||++..+..+...|... ++.+. .+.++.+++..+. ..||+|++|..||+++|+++++.+++. .+..|
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~~~~~~~~~~l~~~----~~~~~ 82 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK----SLSGR 82 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHHHh----CCCCc
Confidence 58999999999999999999764 56544 6899999998774 578999999999999999999998642 34456
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
+|+++...+......+++.|+++|+.||++.++|...+..++.+.
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 888999888888889999999999999999999999999988664
No 120
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.22 E-value=3e-10 Score=113.11 Aligned_cols=119 Identities=18% Similarity=0.351 Sum_probs=102.8
Q ss_pred CceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCc
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~ 688 (740)
..+||++||++..+..+...|... ++.+. .+.++.+++... ...||+|++|..||+++|+++++.+++. .+.+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~----~~~~ 78 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLEPDIVILDLGLPGMNGLDVIPQLHQR----WPAM 78 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH----CCCC
Confidence 358999999999999999999875 46654 788999998876 4578999999999999999999988653 3456
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 689 ~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|+|++|+..+......+++.|+++|+.||++.++|...+...+.+.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 79 NILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred cEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 7888999999888999999999999999999999999999887654
No 121
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.21 E-value=1.1e-10 Score=109.60 Aligned_cols=96 Identities=21% Similarity=0.361 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhh
Q 004636 456 DEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF 531 (740)
|...+.+++.|+++||++|+- ++.|.+...... ..+.++|.|+|+||+ ..+++|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~--------------------~~~~i~I~D~G~gi~--~~~~~~ 93 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIED--------------------HEVYITVRDEGIGIE--NLEEAR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeC--------------------CEEEEEEEEcCCCcC--chhHhh
Confidence 667899999999999999852 355666654321 148899999999997 477899
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEE
Q 004636 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI 582 (740)
Q Consensus 532 ~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~ 582 (740)
+||++.+. ..+|+|+||++++++ .+++++++. .++|+++++.
T Consensus 94 ~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~-~~~Gt~v~i~ 135 (137)
T TIGR01925 94 EPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSE-KEKGTKIIMK 135 (137)
T ss_pred CCCcccCC----CCCCCcccHHHHHHh----CCcEEEEEC-CCCCeEEEEE
Confidence 99997643 246899999998874 578999997 5789988765
No 122
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.21 E-value=3.5e-10 Score=113.29 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=101.0
Q ss_pred ceEEeecCchHHHHHHHHHHHh-cCCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLH-LGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~-~g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+. ..||+|++|..||+++|+++++.+++. .+..|
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~~~~~~~~l~~~----~~~~~ 82 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDPDVILLDLNMKGMSGLDTLNALRRD----GVTAQ 82 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHHHh----CCCCe
Confidence 5899999999999999999975 477775 6899999998764 578999999999999999999988642 34456
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+++++...+......+++.|+++|+.||++.++|...++.++.+
T Consensus 83 ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 83 IIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred EEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 88889888888888999999999999999999999999986654
No 123
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.21 E-value=6.2e-11 Score=134.92 Aligned_cols=111 Identities=20% Similarity=0.325 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhh
Q 004636 457 EKRLMQTLLNVVGNAVKFTKEG----NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (740)
Q Consensus 457 ~~~L~qVl~NLl~NAik~t~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~ 532 (740)
...|.+++.||++||++|+..+ .|.+.+... +...+.|.|.|||+|||+++++++|+
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-------------------g~~~~~I~V~DNG~GIp~e~l~~iFe 94 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL-------------------GSDHYKVAVEDNGPGIPPEFVPKVFG 94 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-------------------CCcEEEEEEEeeCeeCCHHHHhhhhc
Confidence 3445599999999999998753 455544321 11247899999999999999999999
Q ss_pred cccccccccC--CCCCCcchhHHHHHHHHHHc-CCEEEEEeecCCceEEEEEEEEeCC
Q 004636 533 KFAQNQAIAL--RNSSGSGLGLAICKRFVNLM-EGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 533 ~F~~~~~~~~--~~~~GtGLGLaI~k~iv~~~-gG~I~v~S~~~g~G~~~~~~l~l~~ 587 (740)
+|++++.... ...++.|+||+++..+.+.+ ||.+++.|. .|.|++|++.+++..
T Consensus 95 rF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~-~g~G~~f~i~L~i~i 151 (659)
T PRK14867 95 KMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTS-TGDGKIHEMEIKMSV 151 (659)
T ss_pred cccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEE-cCCCEEEEEEEEEEe
Confidence 9987653211 33568999999999999886 566999998 577888888888865
No 124
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.21 E-value=8.9e-11 Score=123.91 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=85.2
Q ss_pred ceEEeecCchHHHHHHHHHHHhcC-C-eEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLG-C-DVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g-~-~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.+||+|||.+.+|+.++++|...| . .|.++.||.+|++.+ +..||+|.||+.||.|||++++++|-+ ....|
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~-----~~p~p 76 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMR-----LRPLP 76 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHhc-----CCCCc
Confidence 589999999999999999999888 4 455899999999987 468999999999999999999988732 23456
Q ss_pred EEEEecCCC--HHHHHHHHHcCCCeEEECCCC
Q 004636 690 IVALTGSTD--NLTKDNCMRVGMDGVILKPVS 719 (740)
Q Consensus 690 II~lt~~~~--~~~~~~~l~~Ga~~~i~KP~~ 719 (740)
||++++-.. .+...+|++.||-||+.||..
T Consensus 77 Vimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 77 VIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 776765333 455668999999999999985
No 125
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-10 Score=111.52 Aligned_cols=114 Identities=25% Similarity=0.319 Sum_probs=94.7
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEE-EeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVM-TVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.++||++||++.++..+...|...||.++ ++.++.++...+ ..+||+||+|+.||.-|-.+.. .+ ...+..+|
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd~~e~~-~~----~~~~~~~p 79 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRDIIEAL-LL----ASENVARP 79 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcCCCEEEEecCCCCccHHHHH-HH----hhcCCCCC
Confidence 46899999999999999999999999877 678888888766 5689999999999999833322 11 12345667
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
||++|++.+++..+.+.++|+.+||.||++...+...+.-+
T Consensus 80 iv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA 120 (194)
T COG3707 80 IVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVA 120 (194)
T ss_pred EEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHH
Confidence 99999999999999999999999999999999888776543
No 126
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-09 Score=126.68 Aligned_cols=146 Identities=24% Similarity=0.369 Sum_probs=104.8
Q ss_pred ecHHHHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHH---HHHHHHHHhhcC-------------CCCeE
Q 004636 417 FNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQT---LLNVVGNAVKFT-------------KEGNI 480 (740)
Q Consensus 417 ~~l~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qV---l~NLl~NAik~t-------------~~g~i 480 (740)
+.+..++...-+.++..+..-+-.+.+.+...-. .-|+.-+.++ |.+|+.||+.|. +.|.|
T Consensus 390 vP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~t---elDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I 466 (716)
T COG0643 390 VPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDT---ELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTI 466 (716)
T ss_pred eeHHHHHhhccHHHHHHHHHhCCeeEEEEecCCe---eehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceE
Confidence 3445555555555555554433334444443321 2387777776 679999999995 23677
Q ss_pred EEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCC------------------------hhhhhhcccc
Q 004636 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD------------------------IPNLFTKFAQ 536 (740)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~------------------------l~~iF~~F~~ 536 (740)
++.+... ++.+.|+|+|+|.||+.+. ..-||.|-|+
T Consensus 467 ~L~A~~~--------------------gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFS 526 (716)
T COG0643 467 TLSAYHE--------------------GNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFS 526 (716)
T ss_pred EEEEEcC--------------------CCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCC
Confidence 7765432 3358999999999996532 3457999887
Q ss_pred cccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeCC
Q 004636 537 NQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 537 ~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~~ 587 (740)
+... -..-+|-|.||=+||+-++.+||+|.++|+ +|+||+|++.+|+.+
T Consensus 527 Ta~~-VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~-~G~GT~Fti~LPLTL 575 (716)
T COG0643 527 TAEQ-VTDVSGRGVGMDVVKTNIEQLGGSISVSSE-PGKGTTFTIRLPLTL 575 (716)
T ss_pred cchh-hhcccCCccCHHHHHHHHHHcCCEEEEEec-CCCCeEEEEecCcHH
Confidence 7653 345789999999999999999999999999 799999999998754
No 127
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-08 Score=111.57 Aligned_cols=111 Identities=25% Similarity=0.419 Sum_probs=83.4
Q ss_pred hhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEE
Q 004636 435 SVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQ 514 (740)
Q Consensus 435 ~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 514 (740)
...++.+..+..+..+..-..-..-+.+++.--++||+||++...+.++.....+ .+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~--------------------~l~l~ 314 (365)
T COG4585 255 ERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDD--------------------ELRLE 314 (365)
T ss_pred hhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCC--------------------EEEEE
Confidence 3344445544432211112235678999999999999999998888877654322 48999
Q ss_pred EEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEe
Q 004636 515 VKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (740)
Q Consensus 515 V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l 585 (740)
|.|||.|++++. .+.|.||.=-|+=|+..||++.+.|. +|+||++++.+|+
T Consensus 315 V~DnG~Gf~~~~-------------------~~~~~GL~~mreRv~~lgG~l~i~S~-~g~Gt~i~i~lPl 365 (365)
T COG4585 315 VIDNGVGFDPDK-------------------EGGGFGLLGMRERVEALGGTLTIDSA-PGQGTTVTITLPL 365 (365)
T ss_pred EEECCcCCCccc-------------------cCCCcchhhHHHHHHHcCCEEEEEec-CCCceEEEEecCC
Confidence 999999987743 11689999999999999999999999 5999999888774
No 128
>PRK03660 anti-sigma F factor; Provisional
Probab=99.12 E-value=7.1e-10 Score=105.26 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhh
Q 004636 456 DEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF 531 (740)
|...+.+++.|++.||++|+. ++.+.+...... ..+.++|.|+|.||++ ..+.|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~--------------------~~l~i~I~D~G~g~~~--~~~~~ 93 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEE--------------------EELEITVRDEGKGIED--IEEAM 93 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECC--------------------CEEEEEEEEccCCCCh--HHHhh
Confidence 667899999999999999863 245666543221 1478999999999986 67899
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeCC
Q 004636 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 532 ~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~~ 587 (740)
++|++.+. ..++.|+||+++++ +.+.+++++. .++|++|++..++..
T Consensus 94 ~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~-~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 94 QPLYTTKP----ELERSGMGFTVMES----FMDEVEVESE-PGKGTTVRMKKYLKK 140 (146)
T ss_pred CCCcccCC----CCCCccccHHHHHH----hCCeEEEEec-CCCcEEEEEEEEecc
Confidence 99987543 13578999998875 4578999987 577999988887753
No 129
>PRK09191 two-component response regulator; Provisional
Probab=99.09 E-value=1.8e-09 Score=112.61 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=95.3
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCC-CCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPG-IDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~-~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
.+|||+||++..+..+...|+..|+.+. .+.++.+++..+. ..||+|++|+.||+ ++|+++++.+++. . .+|
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~~~----~-~~p 212 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKT----F-DVP 212 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHh----C-CCC
Confidence 3799999999999999999998899987 7899999998774 57899999999995 8999999988642 2 467
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
||++|+..+... .+...|+.+|+.||++.++|...+.+++..
T Consensus 213 ii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 213 VIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 888888765543 334567899999999999999999987654
No 130
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.05 E-value=5.4e-08 Score=98.55 Aligned_cols=192 Identities=20% Similarity=0.220 Sum_probs=128.9
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhCCCceeeeeeecHH
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLA--TLINDVLDLSRLEDGSLQLQIGTFNLH 420 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~--~lI~~lLd~srle~g~~~l~~~~~~l~ 420 (740)
.+..++.-+.|-+||=|+.|.+++.+-.+...++ ..+.+ .+...|+. .++.+.|.-+ ....++..
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~---~~~~~Ri~sla~~He~L~~s---------~~~~~~~~ 84 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEAL---RESQNRIQSLALIHELLYKS---------GDDTWDFA 84 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHH---HHHHHHHHHHHHHHHHHhcC---------CcceEcHH
Confidence 4556778899999999999998887765444443 22222 23333332 2344444322 23467888
Q ss_pred HHHHHHHHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcC----CCCeEEEEEEEecccccccCC
Q 004636 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT----KEGNISITGFVAKSESLRDSR 496 (740)
Q Consensus 421 ~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t----~~g~i~i~~~~~~~~~~~~~~ 496 (740)
.+++.+...+.+....+.+.+....++++..- .--..-|--++.-|+.||+||. +.|.|.|......+.
T Consensus 85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~-~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~------ 157 (221)
T COG3920 85 SYLELLASNLFPSYGGKDIRLILDSGPNVFLD-PDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDG------ 157 (221)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCceEEC-chhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCC------
Confidence 88888888888764445566666655542111 1134567788899999999995 357787776544321
Q ss_pred CCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHH-HHcCCEEEEEeecCCc
Q 004636 497 APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFV-NLMEGHIWIESEGLGK 575 (740)
Q Consensus 497 ~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv-~~~gG~I~v~S~~~g~ 575 (740)
....+.|.|+|.|+|.+. ++ ...|+|+.+++.+| +..||.+...+. .
T Consensus 158 ------------~~~~l~v~deg~G~~~~~------~~-----------~~~g~G~~Lv~~lv~~q~~g~~~~~~~---~ 205 (221)
T COG3920 158 ------------GRFLLTVWDEGGGPPVEA------PL-----------SRGGFGLQLVERLVPEQLGGELEDERP---D 205 (221)
T ss_pred ------------CeEEEEEEECCCCCCCCC------CC-----------CCCCcHHHHHHHHHHHHcCCeEEEEcC---C
Confidence 035788999999998742 11 35699999999999 899999999876 2
Q ss_pred eEEEEEEEEeC
Q 004636 576 GCTAIFIVKLG 586 (740)
Q Consensus 576 G~~~~~~l~l~ 586 (740)
|+.|++.+|..
T Consensus 206 Gt~~~i~~~~~ 216 (221)
T COG3920 206 GTEFRLRFPLS 216 (221)
T ss_pred CEEEEEEEecc
Confidence 88887777654
No 131
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.02 E-value=5.8e-06 Score=89.06 Aligned_cols=236 Identities=23% Similarity=0.243 Sum_probs=139.2
Q ss_pred ccccceeEEEEEeecCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 268 LSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDF 347 (740)
Q Consensus 268 l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~~~~~~l~~a~~~~e~~~~~k~~f 347 (740)
+...+.++|.+-+...+++.++.-+.++.+-++.-+...++..+. +++...+.+++-.+- +
T Consensus 308 L~~~g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQie~ge~-----------e~q~~ll~~AEik~L---q----- 368 (557)
T COG3275 308 LRGKGRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQIEAGEA-----------ERQRELLKQAEIKAL---Q----- 368 (557)
T ss_pred cccCCceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHH---H-----
Confidence 445577888888888888888877777776666544433322111 111111222211111 1
Q ss_pred HHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHH
Q 004636 348 LAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVL 427 (740)
Q Consensus 348 la~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~ 427 (740)
...=.|=|=|-||.|.... .. .++..|+ ++-++-.|-|-.-..- ..+.+.|.+-++.+-
T Consensus 369 aQvnPHFLFNaLNTIsa~I---R~--npdkAre--------------Lil~LS~yfR~NL~~~--~~~~v~L~kEl~~v~ 427 (557)
T COG3275 369 AQVNPHFLFNALNTISAVI---RR--NPDKARE--------------LILYLSTYFRYNLENN--TQEIVTLSKELEHVN 427 (557)
T ss_pred hccChHHHHHHHHHHHHHh---cC--ChHHHHH--------------HHHHHHHHHHHHhcCC--cceEeehHHHHHHHH
Confidence 1223466666677665432 11 1222233 3333333333221111 134577877777776
Q ss_pred HHHhhhhh--hcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcC-----CCCeEEEEEEEecccccccCCCCCC
Q 004636 428 NLIKPIAS--VKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFT-----KEGNISITGFVAKSESLRDSRAPEF 500 (740)
Q Consensus 428 ~~~~~~~~--~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t-----~~g~i~i~~~~~~~~~~~~~~~~~~ 500 (740)
..++-.-. ..++++.+++++.+.... =|.. ++.=|++||+||. +.|.|++.+...+.
T Consensus 428 AYl~IEkARF~~rL~v~i~id~~l~~~~--iP~f---ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~----------- 491 (557)
T COG3275 428 AYLSIEKARFGDRLDVVIDIDEELRQVQ--IPSF---ILQPLVENAIKHGISQLKDTGRVTISVEKEDA----------- 491 (557)
T ss_pred HHHHHHHHhcCCceEEEEecCHHHhhcc--Cchh---hhhHHHHHHHHhcccchhcCCceEEEEEEeCC-----------
Confidence 65543211 234566666665543221 2333 3556789999995 24677777654322
Q ss_pred cCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCC---EEEEEeecCCceE
Q 004636 501 FPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEG---HIWIESEGLGKGC 577 (740)
Q Consensus 501 ~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG---~I~v~S~~~g~G~ 577 (740)
.+++.|+|||.|++++ +..|+|+||+.+++=++.+-| -+.++|. +..||
T Consensus 492 ---------~l~i~VeDng~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~-~q~gT 543 (557)
T COG3275 492 ---------DLRIEVEDNGGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESL-EQAGT 543 (557)
T ss_pred ---------eEEEEEecCCCCcCCC------------------CCCCCChHHHHHHHHHHHhcCccccceEEec-cCCCc
Confidence 3899999999999886 146999999999999998888 7888887 46699
Q ss_pred EEEEEEEeCC
Q 004636 578 TAIFIVKLGI 587 (740)
Q Consensus 578 ~~~~~l~l~~ 587 (740)
++.|.+|...
T Consensus 544 ri~f~lp~~~ 553 (557)
T COG3275 544 RIIFRLPLQR 553 (557)
T ss_pred EEEEEecCcc
Confidence 9999998764
No 132
>PRK10693 response regulator of RpoS; Provisional
Probab=99.01 E-value=2.1e-09 Score=114.99 Aligned_cols=88 Identities=17% Similarity=0.456 Sum_probs=76.9
Q ss_pred EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCC-
Q 004636 641 TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPV- 718 (740)
Q Consensus 641 ~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~- 718 (740)
.+.++.++++.+. ..||+|++|+.||+|+|++++++||+. .+.+|||++|+..+.+...+++++|++||+.||+
T Consensus 2 ~a~~g~~al~~l~~~~pDlVL~D~~mp~~~Gle~~~~ir~~----~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGGFTPDLIICDLAMPRMNGIEFVEHLRNR----GDQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 4789999999874 578999999999999999999999753 3456789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHc
Q 004636 719 SLEKMRSVLSDLLE 732 (740)
Q Consensus 719 ~~~~L~~~l~~~l~ 732 (740)
+.++|.+.+.+.++
T Consensus 78 ~~~~L~~~i~~~l~ 91 (303)
T PRK10693 78 DLNRLREMVFACLY 91 (303)
T ss_pred cHHHHHHHHHHHhh
Confidence 58999998887664
No 133
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.01 E-value=5.7e-09 Score=90.28 Aligned_cols=111 Identities=24% Similarity=0.460 Sum_probs=95.8
Q ss_pred EeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEe
Q 004636 616 LVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALT 694 (740)
Q Consensus 616 LIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt 694 (740)
+++|+++..+..+...+...|+.+..+.+..+++..+ ...+|++++|..+++.+|.+.++.+++. .+.+|+++++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~~----~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR----GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCCCCEEEEecCCCCCchHHHHHHHHHh----CCCCCEEEEE
Confidence 4789999999999999998899999999999998876 4578999999999999999999988653 3445677788
Q ss_pred cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 695 GSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 695 ~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
..........+++.|+++|+.||++.+++...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 777777778889999999999999999999888754
No 134
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.90 E-value=6.3e-07 Score=101.42 Aligned_cols=96 Identities=30% Similarity=0.449 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHHHhhcC-----CCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhh
Q 004636 456 DEKRLMQTLLNVVGNAVKFT-----KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t-----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~i 530 (740)
||. -++..|++||++|+ ++|.|.+..... ...+.++|.|||+||+++..+.+
T Consensus 350 ~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~--------------------~~~i~i~i~Dng~g~~~~~~~~~ 406 (456)
T COG2972 350 DPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKKQ--------------------DDVIQISISDNGPGIDEEKLEGL 406 (456)
T ss_pred Cch---HHHhHHHHHHHHHhcccCCCCCEEEEEEEEc--------------------CCEEEEEEeeCCCCCChhHHHHH
Confidence 655 46779999999997 235666654332 12589999999999999877655
Q ss_pred hhcccccccccCCCCCC-cchhHHHHHHHHHHcCCE--EEEEeecCCceEEEEEEEEeC
Q 004636 531 FTKFAQNQAIALRNSSG-SGLGLAICKRFVNLMEGH--IWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 531 F~~F~~~~~~~~~~~~G-tGLGLaI~k~iv~~~gG~--I~v~S~~~g~G~~~~~~l~l~ 586 (740)
.+. .++ .|+||+=+++.++.+-|. +.++|. +|+|++..+.+|..
T Consensus 407 ~~~-----------~~~r~giGL~Nv~~rl~~~~g~~~~~i~s~-~~~gt~v~~~~~~~ 453 (456)
T COG2972 407 STK-----------GENRSGIGLSNVKERLKLYFGEPGLSIDSQ-PGKGTFVQIIIPKR 453 (456)
T ss_pred Hhh-----------ccCcccccHHHHHHHHHHeeCCcceeEeec-CCCcEEEEEEeehh
Confidence 332 112 699999999999999887 588888 68899998887753
No 135
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.80 E-value=5.4e-08 Score=93.96 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhh
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKE----GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF 531 (740)
|...+..++.+++.||++|+.. |.|.|...... ..+.|.|+|+|+||+++.+++.|
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~--------------------~~l~i~V~D~G~g~d~~~~~~~~ 98 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYE--------------------DRLEIVVADNGVSFDYETLKSKL 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEEC--------------------CEEEEEEEECCcCCChHHhcccc
Confidence 5566888999999999999753 45666544321 15899999999999999999999
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 532 ~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
.||++.+... ...+.|+||++++++++. +.+.+. .|+++++.-.+.
T Consensus 99 ~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~~---~G~~v~~~k~~~ 144 (161)
T PRK04069 99 GPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYKD---SGVTVSMTKYIN 144 (161)
T ss_pred CCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEcC---CCcEEEEEEEcC
Confidence 9988655332 235779999999999986 666653 366777665543
No 136
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.77 E-value=2.7e-08 Score=102.66 Aligned_cols=112 Identities=28% Similarity=0.500 Sum_probs=93.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCeEE-EeCCHHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++|+++||++..++.+..++... .+++. .+.++.++++.+. ..+|++|+|+.||+|+|+++++.|+. ..+.++
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~----~~~~~~ 77 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRK----GDPRPA 77 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccCCCeEEEeeccCccchHHHHHHhcc----cCCCCe
Confidence 47999999999999999999832 23333 6888999999874 47899999999999999999999864 256677
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
|+++|++.+.. ..+++..+-||+.||++.+.|...+.+.
T Consensus 78 Ivfvt~~~~~a--~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 78 IVFVTAHDEYA--VAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred EEEEEehHHHH--HHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 99999976554 4566888999999999999999999864
No 137
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.76 E-value=9.1e-05 Score=76.28 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhh
Q 004636 355 MRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIA 434 (740)
Q Consensus 355 LRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~ 434 (740)
|..-|-+..-..++....-.+|.+ -.-..|.+++++|..-|+++...|. .--+--....-|..-++..++.++
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH---~LRP~~LDDLGL~aALe~L~~~f~--- 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH---DLRPRALDDLGLTAALEALLEDFK--- 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc---ccChhhhhhhhHHHHHHHHHHHhh---
Confidence 344455555666666543322222 1125577788888888887766553 111111223334444555555554
Q ss_pred hhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEE
Q 004636 435 SVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQ 514 (740)
Q Consensus 435 ~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 514 (740)
...++.+.+..+.......-.-...+.+|...-+.|-=+|+..-.|+|..... +..+++.
T Consensus 335 ~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~~--------------------~d~vql~ 394 (459)
T COG4564 335 ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQM--------------------GDMVQLM 394 (459)
T ss_pred hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccC--------------------CcceEEE
Confidence 45677776665432111111124578899999999999998665666543221 2258999
Q ss_pred EEecCCCCCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 515 VKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 515 V~D~G~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
|+|||+|++.+... .+-.|+||--.|.=+...||+..++|.+ +||..+..+|..
T Consensus 395 vrDnG~GF~~~~~~----------------~~~~GiGLRNMrERma~~GG~~~v~s~p--~GTel~v~Lp~~ 448 (459)
T COG4564 395 VRDNGVGFSVKEAL----------------QKRHGIGLRNMRERMAHFGGELEVESSP--QGTELTVLLPLD 448 (459)
T ss_pred EecCCCCccchhhc----------------cCccccccccHHHHHHHhCceEEEEecC--CCcEEEEEecch
Confidence 99999998875321 1237999999999999999999999985 378777777654
No 138
>PRK15029 arginine decarboxylase; Provisional
Probab=98.74 E-value=5e-08 Score=114.23 Aligned_cols=105 Identities=12% Similarity=0.196 Sum_probs=84.6
Q ss_pred eEEeecCchH--------HHHHHHHHHHhcCCeEEEeCCHHHHHHHHC--CCCeEEEEecCCCCCCHH----HHHHHHHH
Q 004636 614 KVLVMDENGV--------SRSVTKGLLLHLGCDVMTVSSVEECFRVVS--HEHQVVFMDVCVPGIDGY----EVAVHIHD 679 (740)
Q Consensus 614 ~ILIvdD~~~--------~~~~l~~~L~~~g~~v~~a~~g~eal~~~~--~~~dlvl~D~~mp~~dG~----e~~~~Ir~ 679 (740)
+|||||||.. .++.+...|+..||+|..+.|+.+|++.+. ..+|+||+|++||++||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 689999999999999999999999999884 378999999999999997 89988874
Q ss_pred hhccCCCCceEEEEecCCC--HHHHHHHHHcCCCeEEECCCCHHHH
Q 004636 680 KFTRRHERPLIVALTGSTD--NLTKDNCMRVGMDGVILKPVSLEKM 723 (740)
Q Consensus 680 ~~~~~~~~~~II~lt~~~~--~~~~~~~l~~Ga~~~i~KP~~~~~L 723 (740)
.....|||++|+..+ .......++. +++|+-+--+..++
T Consensus 82 ----~~~~iPIIlLTar~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 122 (755)
T PRK15029 82 ----RQQNVPVFLLGDREKALAAMDRDLLEL-VDEFAWILEDTADF 122 (755)
T ss_pred ----hCCCCCEEEEEcCCcccccCCHHHHHh-hheEEEecCCCHHH
Confidence 234577999999886 3333333332 78888887665554
No 139
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.71 E-value=2e-06 Score=102.41 Aligned_cols=179 Identities=18% Similarity=0.204 Sum_probs=124.0
Q ss_pred hhhHHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEE--EeeccC--CCCcceecCCc
Q 004636 136 IRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLS--YTLRQQ--NPVGYTVPIQL 211 (740)
Q Consensus 136 ~~~~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~ 211 (740)
++++.+..+.+.++|+.+.+.+|.++++......+.+.++.++|.+++++.++..+... +..... ...+...+...
T Consensus 177 L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~~~~~~~~ 256 (686)
T PRK15429 177 LCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAG 256 (686)
T ss_pred HHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhcccccccCCccc
Confidence 33333446779999999999999999999999999999999999999998877665543 222111 11123345555
Q ss_pred hhHHHHhhcCCceEecCCCccccccc---cccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccc
Q 004636 212 PVINQVFSSNHAVKISPNCPVARLRP---LAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQW 288 (740)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~ 288 (740)
+.+.+++.++++..+........... .......+-...+.+|+ ...+..+|++.+.....+.|
T Consensus 257 ~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL--------------~~~~~v~GvL~l~~~~~~~F 322 (686)
T PRK15429 257 TLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPL--------------MSGDTMLGVLKLAQCEEKVF 322 (686)
T ss_pred chHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeE--------------EECCEEEEEEEEeeCCCCcC
Confidence 78899999999998854332111110 00000011122334553 34556889998877778899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 289 HVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNI 328 (740)
Q Consensus 289 ~~~~~~ll~~~a~q~a~al~~a~l~~e~~~~~~~L~~~~~ 328 (740)
++++++++..+|+|+|+|++++..+++..+....+.+.+.
T Consensus 323 ~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~ 362 (686)
T PRK15429 323 TTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENL 362 (686)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHH
Confidence 9999999999999999999999999886665555544443
No 140
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.65 E-value=3.7e-06 Score=87.99 Aligned_cols=150 Identities=19% Similarity=0.262 Sum_probs=109.5
Q ss_pred eeecHHHHHHHHHHHHhhhhhhcCe---EEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCC-----CCe----EEE
Q 004636 415 GTFNLHAVFREVLNLIKPIASVKKL---LVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-----EGN----ISI 482 (740)
Q Consensus 415 ~~~~l~~li~~~~~~~~~~~~~k~i---~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~-----~g~----i~i 482 (740)
..+++.++|+++.+..+..+..+=+ .+.++-.......+ .=|..|..++..|+.||.++|- .+. |.|
T Consensus 214 ~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V 292 (414)
T KOG0787|consen 214 PRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKV 292 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 4689999999999998877765532 12332222322221 2478899999999999999872 233 555
Q ss_pred EEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccccCC------CCCCcchhHHHHH
Q 004636 483 TGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALR------NSSGSGLGLAICK 556 (740)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~~~~------~~~GtGLGLaI~k 556 (740)
.+...+ .-+.|.|+|.|-||+.++.+++|.=-|++...... .-.|.|-||.|||
T Consensus 293 ~V~~gd--------------------eDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisr 352 (414)
T KOG0787|consen 293 TVAKGD--------------------EDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISR 352 (414)
T ss_pred EEecCC--------------------cceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHH
Confidence 443211 12678899999999999999999976665433222 2359999999999
Q ss_pred HHHHHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 557 RFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 557 ~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
...+..||++.+.|- .|-||-..+.++..
T Consensus 353 lYa~yf~Gdl~L~Sl-eG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 353 LYARYFGGDLKLQSL-EGIGTDVYIYLKAL 381 (414)
T ss_pred HHHHHhCCCeeEEee-eccccceEEEeccC
Confidence 999999999999998 68899888877653
No 141
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.61 E-value=3.7e-07 Score=87.89 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhh
Q 004636 457 EKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (740)
Q Consensus 457 ~~~L~qVl~NLl~NAik~t~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~ 532 (740)
...+.-++.+++.||++|+. +|.|.|...... ..+.+.|+|+|+|++++.++..|.
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~--------------------~~l~i~V~D~G~gfd~~~~~~~~~ 99 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYE--------------------DRLEIIVSDQGDSFDMDTFKQSLG 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeC--------------------CEEEEEEEEcccccCchhhccccC
Confidence 34577899999999999974 356666654321 148899999999999999888888
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEeC
Q 004636 533 KFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 533 ~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l~ 586 (740)
+++..+.. ....+.|+||+|++++++ ++.+++. +|+++.+...++
T Consensus 100 ~~~~~~~~--~~~~~~G~GL~Li~~L~D----~v~~~~~---~G~~l~l~k~~~ 144 (159)
T TIGR01924 100 PYDGSEPI--DDLREGGLGLFLIETLMD----EVEVYED---SGVTVAMTKYLN 144 (159)
T ss_pred CCCCCCCc--ccCCCCccCHHHHHHhcc----EEEEEeC---CCEEEEEEEEEc
Confidence 87654432 224567999999999998 6777763 356666655444
No 142
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.61 E-value=2e-07 Score=74.38 Aligned_cols=64 Identities=53% Similarity=0.789 Sum_probs=56.9
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 004636 344 RNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLED 407 (740)
Q Consensus 344 k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~ 407 (740)
+.+|++.++||+||||++|.++++.+.+...+++..++++.+.++++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999887566666688999999999999999999999998764
No 143
>PF14501 HATPase_c_5: GHKL domain
Probab=98.40 E-value=4.3e-06 Score=73.85 Aligned_cols=84 Identities=29% Similarity=0.368 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhh
Q 004636 456 DEKRLMQTLLNVVGNAVKFTK----EGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF 531 (740)
|..-|-.+|.||++||++++. +..|.+...... ..+.|.|.+.-.+ + .++++
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~--------------------~~~~i~i~N~~~~---~-~~~~~ 57 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREEN--------------------GFLVIIIENSCEK---E-IEKLE 57 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC--------------------CEEEEEEEECCCC---c-ccccc
Confidence 455678899999999999864 234555543321 2588999998544 1 12222
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEee
Q 004636 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (740)
Q Consensus 532 ~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~ 571 (740)
+. ..+.++.|+||..++++++.++|++.++++
T Consensus 58 ----~~----~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~ 89 (100)
T PF14501_consen 58 ----SS----SSKKKGHGIGLKNVKKILEKYNGSLSIESE 89 (100)
T ss_pred ----cc----ccCCCCCCcCHHHHHHHHHHCCCEEEEEEE
Confidence 11 234689999999999999999999999887
No 144
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=98.36 E-value=4.2e-05 Score=91.05 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeecc--CCCCcceecCCchhHHHHhhcC
Q 004636 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ--QNPVGYTVPIQLPVINQVFSSN 221 (740)
Q Consensus 144 ~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 221 (740)
..++.+++.+.++.|.++++...+..+.+.++++.|.+|+.+.++..+........ ........+...+.+.+++.++
T Consensus 3 ~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg 82 (748)
T PRK11061 3 TRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLA 82 (748)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhccC
Confidence 35788999999999999999999999999999999999998877765555433321 1111223455678899999999
Q ss_pred CceEecCCCccccccccccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHHH
Q 004636 222 HAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVAD 301 (740)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a~ 301 (740)
+++.+.+.....++.........+...-+.+||. ..+..+|++.+....++.|++++.+++..+|.
T Consensus 83 ~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~--------------~~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA~ 148 (748)
T PRK11061 83 EPINLADAQKHPSFKYIPSVKEERFRAFLGVPII--------------YRRQLLGVLVVQQRELRQFDESEESFLVTLAT 148 (748)
T ss_pred ceEEECCcccCcccccCccccCccceEEEEEEEe--------------eCCEEEEEEEEeeCCCCCCCHHHHHHHHHHHH
Confidence 9999987776655532111112233344556643 34568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004636 302 QVAVALSHAAILEES 316 (740)
Q Consensus 302 q~a~al~~a~l~~e~ 316 (740)
|+++|++++++.+..
T Consensus 149 ~aAiAL~na~l~~~~ 163 (748)
T PRK11061 149 QLAAILSQSQLTALF 163 (748)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887654
No 145
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.29 E-value=6.3e-06 Score=101.87 Aligned_cols=118 Identities=12% Similarity=0.174 Sum_probs=97.9
Q ss_pred CCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCc
Q 004636 609 NFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 609 ~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~ 688 (740)
.+.+.+|+++||++..+..+..+|+..|+.+..+.++.+ .....||++++|+.||++++.+......+... ...+
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~---l~~~~~d~il~~~~~~~~~~~~~~~~~~~~~~--~~~~ 607 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ---LPEAHYDILLLGLPVTFREPLTMLHERLAKAK--SMTD 607 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH---hccCCCCEEEecccCCCCCCHHHHHHHHHhhh--hcCC
Confidence 356789999999999999999999999999999999887 23467899999999999888776655544332 2234
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHH
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 689 ~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l 731 (740)
++|++++.........+.+.|+++|+.||++.+++...+....
T Consensus 608 ~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 608 FLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 5777888888888999999999999999999999999987653
No 146
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.20 E-value=7.3e-06 Score=64.73 Aligned_cols=62 Identities=48% Similarity=0.665 Sum_probs=53.1
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004636 343 ARNDFLAVMNHEMRTPMHAIIALSSLLQETEL-TPEQRLMVETILKSSNLLATLINDVLDLSR 404 (740)
Q Consensus 343 ~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l-~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr 404 (740)
.+.++.+.++||+||||+++.+.++.+.+... .++....++.+.++++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999999998876433 556678889999999999999999999874
No 147
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.16 E-value=8.9e-06 Score=87.11 Aligned_cols=113 Identities=19% Similarity=0.316 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCe----EEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhh
Q 004636 457 EKRLMQTLLNVVGNAVKFTKEGN----ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (740)
Q Consensus 457 ~~~L~qVl~NLl~NAik~t~~g~----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~ 532 (740)
...|.|++..|++|++++|+..+ |.+.+... +..++.+.|.|||||||+++.+++|-
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-------------------~~d~y~v~veDNGpGIP~e~IPkvFG 94 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-------------------GKDHYKVIVEDNGPGIPEEQIPKVFG 94 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-------------------CCceEEEEEecCCCCCChhHhHHHHH
Confidence 45789999999999999998533 44443322 12368899999999999999999998
Q ss_pred cccccccc-cCC-CCCCcchhHHHHHHHHHHcCCE-EEEEeecCCceEEEEEEEEeCCC
Q 004636 533 KFAQNQAI-ALR-NSSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGCTAIFIVKLGIP 588 (740)
Q Consensus 533 ~F~~~~~~-~~~-~~~GtGLGLaI~k~iv~~~gG~-I~v~S~~~g~G~~~~~~l~l~~~ 588 (740)
++.-++.- ... +.+--|||.+-|--..++.-|+ +.|.|...+.++...+.+.....
T Consensus 95 k~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~ 153 (538)
T COG1389 95 KMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQ 153 (538)
T ss_pred HHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCC
Confidence 76544322 112 2345689999998889988775 88888755557777777776543
No 148
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.15 E-value=1.6e-06 Score=94.99 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=79.0
Q ss_pred CeEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 637 CDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 637 ~~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
++|.++.+|.+++..+ ...+|.+++|++||+|||+++++.++.. +.+ ++++|+..+..+..+.+++|++++++
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~-----~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAE-----PAT-VVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhcCCCCeEEeecccCCcCchhHHHHHhcC-----Ccc-eEEEEecCCCCcchhHHhhhhhhhcc
Confidence 5677799999999977 5788999999999999999999888532 333 77789999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHccc
Q 004636 716 KPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 716 KP~~~~~L~~~l~~~l~~~ 734 (740)
||++...+..........+
T Consensus 87 ~~~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CCCChHHHHHhhhhhccch
Confidence 9999999998887765443
No 149
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=1.4e-05 Score=85.84 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhccccc
Q 004636 458 KRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQN 537 (740)
Q Consensus 458 ~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~ 537 (740)
..+.+++.||++||+++.. ..|.+.+.. . ....|+|.|+|.||++++++++|++|+++
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~-------------------~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--G-------------------GLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--C-------------------CEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 3577999999999999864 456555421 1 12469999999999999999999999987
Q ss_pred ccccC------CCCCCcchhHHHHHHHHHHcCCEEEEEeec-CCceEEE
Q 004636 538 QAIAL------RNSSGSGLGLAICKRFVNLMEGHIWIESEG-LGKGCTA 579 (740)
Q Consensus 538 ~~~~~------~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~-~g~G~~~ 579 (740)
+.... ...+--|.||+-...+ +++.+.|.. .+.+..+
T Consensus 79 k~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~ 122 (312)
T TIGR00585 79 KIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAW 122 (312)
T ss_pred CCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceE
Confidence 65321 1124447777654333 368888863 2334443
No 150
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.09 E-value=0.00017 Score=83.42 Aligned_cols=157 Identities=14% Similarity=0.186 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEE-EeeccCCCCcceecCCchhHHHHhhcCC
Q 004636 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLS-YTLRQQNPVGYTVPIQLPVINQVFSSNH 222 (740)
Q Consensus 144 ~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (740)
..++.+++.+..+.|.++++...+..+.+.++++.|++++.+.++..+... +............+...+...+++.+++
T Consensus 5 ~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~~~ 84 (534)
T TIGR01817 5 AALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVATGN 84 (534)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhhcccccccCCccHHHHHHhcCC
Confidence 458889999999999999999999999999999999999988776543332 2211111111234456788999999999
Q ss_pred ceEecCCCccccccccccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCC-cccchhhHHHHHHHHHH
Q 004636 223 AVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDS-ARQWHVHELELVEVVAD 301 (740)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~-~r~~~~~~~~ll~~~a~ 301 (740)
+..+.+.....++.........+....+++|+. ..+..+|++++.+.. .+.|+++++++++.+|.
T Consensus 85 pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~--------------~~g~viGvL~v~s~~~~~~ft~~d~~lL~~lA~ 150 (534)
T TIGR01817 85 SLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIK--------------ADSETIGVLAADRDFRSRERLEEEVRFLEMVAN 150 (534)
T ss_pred eEEecccccCchhhhccccccCCcceEEEEEEc--------------CCCEEEEEEEEEeccccccccHHHHHHHHHHHH
Confidence 999887765554432111112333445666643 356688999998764 46679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 004636 302 QVAVALSHAAILE 314 (740)
Q Consensus 302 q~a~al~~a~l~~ 314 (740)
++++++..++++.
T Consensus 151 ~ia~aI~~~~~~~ 163 (534)
T TIGR01817 151 LIGQTVRLHRLVA 163 (534)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998766654
No 151
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.06 E-value=9.2e-05 Score=67.62 Aligned_cols=129 Identities=22% Similarity=0.320 Sum_probs=90.2
Q ss_pred chhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCCCCcceecCCchhHHHHhhcCCceEecCCCccccccc
Q 004636 158 DRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRP 237 (740)
Q Consensus 158 d~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (740)
|.++++..++..+.+.++.+.|++|..+.++..+................+...+.+.+++.++++........ .
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~---- 75 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDE-R---- 75 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC------
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccc-c----
Confidence 57889999999999999999999999998877776665542222222356778889999999998765543221 0
Q ss_pred cccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHHHHHHHHHHH
Q 004636 238 LAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSH 309 (740)
Q Consensus 238 ~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a~q~a~al~~ 309 (740)
...+....+.+|+. .....+|++++.....+.|+++++++++.+|++++++++|
T Consensus 76 ----~~~~~~s~~~vPl~--------------~~~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 76 ----DFLGIRSLLVVPLR--------------SRDRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp ----TTTTTCEEEEEEEE--------------ETTEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred ----cCCCCCEEEEEEEe--------------ECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 01222333445543 3346788888888888899999999999999999999874
No 152
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=97.97 E-value=8.1e-05 Score=70.33 Aligned_cols=136 Identities=23% Similarity=0.300 Sum_probs=96.3
Q ss_pred chhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCC--CCcceecCCchhHHHHhhcCCceEecCCCccccc
Q 004636 158 DRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN--PVGYTVPIQLPVINQVFSSNHAVKISPNCPVARL 235 (740)
Q Consensus 158 d~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (740)
|.+++++.+++++.+.+++++|.++..+.++..+...+...... ..+...+...+....++.+.++..+.+.....++
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 67899999999999999999999988888887765554442221 1233445556788999999999998877655544
Q ss_pred ccccccc---------------CCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCc-ccchhhHHHHHHHH
Q 004636 236 RPLAGKY---------------MPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSA-RQWHVHELELVEVV 299 (740)
Q Consensus 236 ~~~~~~~---------------~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~-r~~~~~~~~ll~~~ 299 (740)
....... ..|-...+.+| +...+..+|++++....+ +.|+++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vP--------------i~~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVP--------------IISGGRLIGVLSLYRTRPGRPFTEEDLALLESF 146 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEE--------------EEETTEEEEEEEEEEESSSSS--HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEee--------------eecccCcEEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 3211110 12333344455 334567889999988877 99999999999999
Q ss_pred HHHHHHHH
Q 004636 300 ADQVAVAL 307 (740)
Q Consensus 300 a~q~a~al 307 (740)
|+++++||
T Consensus 147 a~~~a~ai 154 (154)
T PF01590_consen 147 AQQLAIAI 154 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999886
No 153
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.81 E-value=0.00013 Score=66.97 Aligned_cols=92 Identities=22% Similarity=0.280 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhh
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKE----GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~~----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF 531 (740)
+...+.-++.-++.||++|+.. +.|.+...... ..+.++|.|+|+|+++...+.-.
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~--------------------~~l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDP--------------------DRLRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcC--------------------CEEEEEEEECCCCCChhhccCcc
Confidence 3457888999999999999865 34555533321 24899999999999887544321
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCCceEEEEE
Q 004636 532 TKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 581 (740)
Q Consensus 532 ~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~~~~ 581 (740)
..- .......|+||.|.+++++.. .+ + .++|+++++
T Consensus 88 ~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~--~~~gn~v~l 123 (125)
T PF13581_consen 88 PWE-------PDSLREGGRGLFLIRSLMDEV----DY-R--EDGGNTVTL 123 (125)
T ss_pred ccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E--CCCeEEEEE
Confidence 110 023567899999999999865 44 3 345777655
No 154
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.73 E-value=0.0016 Score=74.89 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=106.2
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCCCCcceecC-CchhHHHHhhcCCc
Q 004636 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPI-QLPVINQVFSSNHA 223 (740)
Q Consensus 145 ~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 223 (740)
.++++++.|.+++|.+++++..+..+.+.+.++.|.+...+.+...+..++....... ....+. +.|.+..++.++.+
T Consensus 5 ~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~~l~~~as~gl~~~~~-~~~~~~geGP~l~av~~~g~~ 83 (509)
T PRK05022 5 ALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDVL-GRRFALEEHPRLEAILRAGDP 83 (509)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCcEEEEEEcCCChHhh-CCccCCCcchHHHHHHhcCCe
Confidence 5789999999999999999999999999999999998877754333333333221111 111112 23567777777888
Q ss_pred eEecCCCccccc-ccc-cc-ccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHH
Q 004636 224 VKISPNCPVARL-RPL-AG-KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300 (740)
Q Consensus 224 ~~~~~~~~~~~~-~~~-~~-~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a 300 (740)
+.+.++.....+ ... .. ....|-...+++|+. ..+..+|++.+....+..|++++.+++..+|
T Consensus 84 v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~--------------~~~~~~GvL~l~~~~~~~f~~~~~~~l~~~a 149 (509)
T PRK05022 84 VRFPADSELPDPYDGLIPGVQESLPVHDCMGLPLF--------------VDGRLIGALTLDALDPGQFDAFSDEELRALA 149 (509)
T ss_pred EEEecCCCCCcccccccccccccCCcceEEEEEEE--------------ECCEEEEEEEEeeCCCCcCCHHHHHHHHHHH
Confidence 877755422221 000 00 011122245566653 3456788999988888899999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004636 301 DQVAVALSHAAILEES 316 (740)
Q Consensus 301 ~q~a~al~~a~l~~e~ 316 (740)
.++++|+.+++.+++.
T Consensus 150 ~~~a~Al~~a~~~~~l 165 (509)
T PRK05022 150 ALAAATLRNALLIEQL 165 (509)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988877664
No 155
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.72 E-value=0.00083 Score=80.15 Aligned_cols=165 Identities=14% Similarity=0.130 Sum_probs=110.7
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCC-CCc--ceecCCchhHHHHhhcC
Q 004636 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQN-PVG--YTVPIQLPVINQVFSSN 221 (740)
Q Consensus 145 ~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~ 221 (740)
.+..+|+.+.+..|..+.+......+.+.+..+++.+.+.+.....+.. +...... +.. .......+...+++.++
T Consensus 10 ~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~~~ 88 (686)
T PRK15429 10 GLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILSRP 88 (686)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEeecC
Confidence 4778899999999999999999999999999999999888876655443 3332111 110 01112334455666677
Q ss_pred CceEecCCCccccccccc--cccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHH
Q 004636 222 HAVKISPNCPVARLRPLA--GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVV 299 (740)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~ 299 (740)
++..+.......+++... +.|.+ | .. +...| +...+.++|++++.....+.|+++|.+++..+
T Consensus 89 ~~l~~~~~~~~~~~~~l~~~~~~~~---------~---~~--~lgvP-l~~~~~v~G~l~l~~~~~~~Ft~~d~~ll~~l 153 (686)
T PRK15429 89 DTLHCSYEEFCETWPQLAAGGLYPK---------F---GH--YCLMP-LAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTF 153 (686)
T ss_pred ceEEEchHHhhhccHHHhhcccccC---------c---cc--eEEec-eeeCCeeEEEEEEEEcCCCCCCHHHHHHHHHH
Confidence 776655443222221111 11100 0 00 12234 44577889999999888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 300 ADQVAVALSHAAILEESMRARDLLMQ 325 (740)
Q Consensus 300 a~q~a~al~~a~l~~e~~~~~~~L~~ 325 (740)
|.++++|+++++++++..+..+.|.+
T Consensus 154 a~~a~~aie~~~~~e~~~~~~~~L~~ 179 (686)
T PRK15429 154 TQIVSVVTEQIQSRVVNNVDYELLCR 179 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887766655533
No 156
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.54 E-value=0.0011 Score=62.67 Aligned_cols=89 Identities=26% Similarity=0.359 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-----CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhh
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKE-----GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~~-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~i 530 (740)
|-.+++-++..++.||++|+.. |.|.|....... .+.+.|.|.|+|+. ..+..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~--------------------~~~i~i~D~G~~~~--~~~~~ 94 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDG--------------------KLEIRIWDQGPGIE--DLEES 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCC--------------------eEEEEEEeCCCCCC--CHHHh
Confidence 6778999999999999999754 777777654322 48999999997764 46666
Q ss_pred hhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCC
Q 004636 531 FTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (740)
Q Consensus 531 F~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g 574 (740)
+.+.+.... ....-|+||.+.+++++ ++.+++...|
T Consensus 95 ~~~~~~~~~----~~~~~G~Gl~l~~~~~D----~~~~~~~~~~ 130 (146)
T COG2172 95 LGPGDTTAE----GLQEGGLGLFLAKRLMD----EFSYERSEDG 130 (146)
T ss_pred cCCCCCCCc----ccccccccHHHHhhhhe----eEEEEeccCC
Confidence 776644332 23445999999999885 6778865444
No 157
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=97.46 E-value=0.005 Score=55.93 Aligned_cols=141 Identities=24% Similarity=0.298 Sum_probs=89.0
Q ss_pred chhHHHHHHHHhhhcccccceeEEEecCCC-CceEEEEEeeccC-CCCcceecCCchhHHHHhhcCCceEecCCCccccc
Q 004636 158 DRHTILKTTLVELGRTLALEECALWMPTRT-GLELQLSYTLRQQ-NPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARL 235 (740)
Q Consensus 158 d~~~il~t~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (740)
|.++++..++..+.+.++.+.|.++..+.+ ...+......... .......+...+...+++.++++....+.......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPVF 80 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechhhCCcc
Confidence 456788888899999999999999988763 3333222221111 11123345556778888888877776544321110
Q ss_pred cccccccCC---CceEEEEeceecccccccCCcccccccceeEEEEEeecC-CcccchhhHHHHHHHHHHHHHHHHHHHH
Q 004636 236 RPLAGKYMP---GEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSD-SARQWHVHELELVEVVADQVAVALSHAA 311 (740)
Q Consensus 236 ~~~~~~~~~---g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~-~~r~~~~~~~~ll~~~a~q~a~al~~a~ 311 (740)
...+.. +-...+.+|+. ..+..+|++++... ..+.|+.+++++++.++++++.++++.+
T Consensus 81 ---~~~~~~~~~~~~s~~~~Pl~--------------~~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~ 143 (149)
T smart00065 81 ---ALDLLGRYQGVRSFLAVPLV--------------ADGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQ 143 (149)
T ss_pred ---ccccccceeceeeEEEeeee--------------ecCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 11222334432 24556777777776 7899999999999999999999999887
Q ss_pred HHHH
Q 004636 312 ILEE 315 (740)
Q Consensus 312 l~~e 315 (740)
+.++
T Consensus 144 ~~~~ 147 (149)
T smart00065 144 LYEE 147 (149)
T ss_pred HHHh
Confidence 6543
No 158
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.44 E-value=0.001 Score=59.66 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=72.8
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEE-EEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVV-FMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlv-l~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
||||||||..-+..+..+|+-.|+++..+++.+-.........+.+ +....++ ...+.++.+- ...+++|+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~----~~~~~~Pvll 74 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADWSSPWEACAVILGSCS--KLAELLKELL----KWAPHIPVLL 74 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhhhcCCcEEEEEecCch--hHHHHHHHHH----hhCCCCCEEE
Confidence 6999999999999999999999999998887543122223444443 4433333 3344444442 3467788987
Q ss_pred EecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
+......... ..+-+-|..|++..+|.+.+++.
T Consensus 75 lg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 75 LGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 7766554111 12667799999999999999875
No 159
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.09 E-value=0.002 Score=75.47 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccc
Q 004636 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (740)
Q Consensus 459 ~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~ 538 (740)
+...|+..||+||+.+. ...|.|.+. .. ....|+|.|+|.||++++++.+|.++++.+
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~--~~-------------------g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE--EG-------------------GLKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE--eC-------------------CeEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 56789999999999975 455666542 11 135799999999999999999999988765
Q ss_pred cccC------CCCCCcchhHHHHHHHHHHcCCEEEEEeecC
Q 004636 539 AIAL------RNSSGSGLGLAICKRFVNLMEGHIWIESEGL 573 (740)
Q Consensus 539 ~~~~------~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~ 573 (740)
-... ...|=-|.||+-...+ +++.+.|...
T Consensus 80 i~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~~ 115 (617)
T PRK00095 80 IASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRTA 115 (617)
T ss_pred CCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEecC
Confidence 3221 1123346666654443 4677777643
No 160
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=97.02 E-value=0.0071 Score=56.44 Aligned_cols=135 Identities=21% Similarity=0.252 Sum_probs=79.0
Q ss_pred cchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCCCCcce--ecCCc--hh-------HHHHhhcCCceE
Q 004636 157 LDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYT--VPIQL--PV-------INQVFSSNHAVK 225 (740)
Q Consensus 157 ld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~-------~~~~~~~~~~~~ 225 (740)
.|.+++++.++..+.+..+.+.+.+|+.+.++......+........... .+... .. ...++.++++..
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 46788899988889999999999988887776433333332221111111 11111 11 111277888888
Q ss_pred ec-CCCccccccccccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHHHHHH
Q 004636 226 IS-PNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVA 304 (740)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a~q~a 304 (740)
+. ++..... ....-..|-...+.+||. ..+..+|++.+.+...+.|+++++++++.+|+|++
T Consensus 82 ~~~~~~~~~~---~~~~~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a 144 (148)
T PF13185_consen 82 INDDDSSFPP---WELARHPGIRSILCVPLR--------------SGGEVIGVLSLYSKEPNAFSEEDLELLEALADQIA 144 (148)
T ss_dssp ESCCCGGGST---THHHCCTT-SEEEEEEEE--------------ETTEEEEEEEEEESSTT---HHHHHHHHHHHHHHH
T ss_pred EeCccccccc---hhhhccccCCEEEEEEEe--------------ECCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHH
Confidence 77 2211111 011112233445566653 34578899999998889999999999999999999
Q ss_pred HHHH
Q 004636 305 VALS 308 (740)
Q Consensus 305 ~al~ 308 (740)
+||+
T Consensus 145 ~aie 148 (148)
T PF13185_consen 145 IAIE 148 (148)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 161
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.87 E-value=0.0054 Score=44.52 Aligned_cols=53 Identities=25% Similarity=0.526 Sum_probs=46.7
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecCCC
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVP 666 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~mp 666 (740)
+++++||++..+..+...+...|+++....++.++...+. ..+|++++|..+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCC
Confidence 6899999999999999999989999999999999988774 5689999998764
No 162
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=96.80 E-value=0.14 Score=57.43 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=108.2
Q ss_pred HHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEee--ccCCCCcceecCCchhHHHHhhcCCc
Q 004636 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL--RQQNPVGYTVPIQLPVINQVFSSNHA 223 (740)
Q Consensus 146 l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (740)
++.+-++.++.++.++-|...+.++......+.|-+|+-+.++..+.+-.+. ......-.....+.+.+..+..+.+|
T Consensus 5 Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aeP 84 (756)
T COG3605 5 LRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEP 84 (756)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccCC
Confidence 5667777888888888888889999999999999999999887655554332 21111112233456778888888888
Q ss_pred eEecCCCccccccccccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHHHHH
Q 004636 224 VKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQV 303 (740)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a~q~ 303 (740)
..+.+.+.-..|. |.|..--.+ | .. ..+.| +...+..+||++++....|.|.+.|.+.+.++|.|+
T Consensus 85 lNLsdAqsHPsF~-----Y~petgEE~----Y--~s--FLGvP-Ii~~~r~lGVLVVQqk~~R~y~E~Eve~L~T~A~~l 150 (756)
T COG3605 85 LNLADAQSHPSFK-----YLPETGEER----Y--HS--FLGVP-IIRRGRLLGVLVVQQRELRQYDEDEVEFLVTLAMQL 150 (756)
T ss_pred CChhhhhhCCccc-----cccccchHH----H--HH--hhccc-eeecCceeEEEEEecccccccchHHHHHHHHHHHHH
Confidence 8887766544443 333111100 0 00 12344 335678999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 004636 304 AVALSHAAIL 313 (740)
Q Consensus 304 a~al~~a~l~ 313 (740)
|.-++++.+.
T Consensus 151 A~iva~~el~ 160 (756)
T COG3605 151 AEIVAQSQLT 160 (756)
T ss_pred HHHHHhhhhh
Confidence 9988888765
No 163
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.71 E-value=0.0011 Score=62.20 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccccc
Q 004636 461 MQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI 540 (740)
Q Consensus 461 ~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~~~ 540 (740)
.++|.-||.||+.+.. ..|.|.+...... .-.|.|.|+|.||+.+++.+.|...+..+..
T Consensus 4 ~~al~ElI~Ns~DA~a-~~I~I~i~~~~~~-------------------~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~ 63 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA-TNIKISIDEDKKG-------------------ERYIVIEDNGEGMSREDLESFFRIGRSSKKS 63 (137)
T ss_dssp THHHHHHHHHHHHHHH-HHEEEEEEEETTT-------------------TTEEEEEESSS---HHHHHHHTTCHHTHHHH
T ss_pred HHHHHHHHHHHHHccC-CEEEEEEEcCCCC-------------------CcEEEEEECCcCCCHHHHHHhccccCCCCCc
Confidence 4678889999998643 2355554433211 1368999999999999999988765544431
Q ss_pred --cCCCCCCcchh--HHHHHHHHHHcCCEEEEEeecCCceEEEEEEEEe
Q 004636 541 --ALRNSSGSGLG--LAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (740)
Q Consensus 541 --~~~~~~GtGLG--LaI~k~iv~~~gG~I~v~S~~~g~G~~~~~~l~l 585 (740)
.....+.-|+| +|+. .++..+.+.|...|...++.|....
T Consensus 64 ~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~ 107 (137)
T PF13589_consen 64 EKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDW 107 (137)
T ss_dssp HHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEE
T ss_pred hhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEec
Confidence 12234556777 4433 4688899999866666666666553
No 164
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.70 E-value=0.058 Score=50.44 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=84.9
Q ss_pred CceEEee----cCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHH-CCCCeEEEEecCCCCC--CHHHHHHHHHHhh
Q 004636 612 GLKVLVM----DENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVV-SHEHQVVFMDVCVPGI--DGYEVAVHIHDKF 681 (740)
Q Consensus 612 ~~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~-~~~~dlvl~D~~mp~~--dG~e~~~~Ir~~~ 681 (740)
+.+||+. |.+..-...+..+|+..||+|+... ..++..+.+ +..+|+|.+...|... +-.++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~- 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA- 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc-
Confidence 3467777 8888888899999999999999653 466767665 5689999999877632 223444444332
Q ss_pred ccCCCCceEEEEecCC------CHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 682 TRRHERPLIVALTGST------DNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 682 ~~~~~~~~II~lt~~~------~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
..+.++|+ +.+.. ..++..++.+.|++.+....-+.++...-+++.++.|
T Consensus 82 --~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~~~ 137 (137)
T PRK02261 82 --GLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLNQR 137 (137)
T ss_pred --CCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhccC
Confidence 12344444 44443 3456678889999999999999999999999877643
No 165
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.55 E-value=0.053 Score=49.61 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=74.5
Q ss_pred cCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCC-CceEEEE
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHE-RPLIVAL 693 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~-~~~II~l 693 (740)
|.+..-...+..+|+..||+|.... ..++..+.+ ...+|+|.+...++. ..+.++++.+..++..+ .++ +++
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~--~~~~~~~~~~~L~~~~~~~i~-i~~ 86 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGG--HMTLFPEVIELLRELGAGDIL-VVG 86 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchh--hHHHHHHHHHHHHhcCCCCCE-EEE
Confidence 6666667778889999999998543 466666665 568999999887753 33334443333333322 443 446
Q ss_pred ecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHH
Q 004636 694 TGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLS 728 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~ 728 (740)
.+....+...+..++|+|+|+..--+.++...-++
T Consensus 87 GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 66666777788899999999999999888877654
No 166
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.79 E-value=0.22 Score=46.25 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=77.5
Q ss_pred cCchHHHHHHHHHHHhcCCeEEEe---CCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCC-CceEEEE
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMTV---SSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHE-RPLIVAL 693 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~-~~~II~l 693 (740)
|-+..-...+..+|+..||+|+.. .+.++..+.. +..+|+|.+...|.. -.+.++.+.+..+.... .++|+ +
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~--~~~~~~~~~~~L~~~g~~~i~vi-v 89 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGG--HLTLVPALRKELDKLGRPDILVV-V 89 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhh--hHHHHHHHHHHHHhcCCCCCEEE-E
Confidence 566666788899999999999853 4677777765 568898888665532 24444444444333322 34444 5
Q ss_pred ecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 694 TGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
.+....++..+..++|+|+|+..=-++.+..+.+.+.+.
T Consensus 90 GG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 90 GGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred eCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 655566677888999999999988899999888877543
No 167
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.61 E-value=0.022 Score=66.77 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhh---
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKEG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN--- 529 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~--- 529 (740)
+...+.+++.-||+||+.....| .|.|.+. .+ -.|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~--~d---------------------g~I~V~DnGrGIP~~~~~~~~~ 90 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH--AD---------------------GSVSVRDNGRGIPVGIHPEEGK 90 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe--CC---------------------CcEEEEEcCCCCCcccccccCC
Confidence 56788999999999999875443 4554432 11 1589999999999999888
Q ss_pred -----hhhcccccccccC---CCCCC-cchhHHHHHHHHH
Q 004636 530 -----LFTKFAQNQAIAL---RNSSG-SGLGLAICKRFVN 560 (740)
Q Consensus 530 -----iF~~F~~~~~~~~---~~~~G-tGLGLaI~k~iv~ 560 (740)
+|.....+..-.. ...+| .|.|++.+..+-+
T Consensus 91 ~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~ 130 (631)
T PRK05559 91 SGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSS 130 (631)
T ss_pred cchheeeeeccccCccCCccccccCcccccchhhhhhhee
Confidence 8876443332111 11233 6999998887754
No 168
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=95.12 E-value=0.03 Score=52.68 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCc--eEEEEEeecc--CCCCc--cee-cCCchhHHHH
Q 004636 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGL--ELQLSYTLRQ--QNPVG--YTV-PIQLPVINQV 217 (740)
Q Consensus 145 ~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~--~~~-~~~~~~~~~~ 217 (740)
.+..+++.++.+.+.++++.++...+...++.+.|.+|..+.+.. ...+.+.... ..... ... +.......++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T COG2203 5 LLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIGIA 84 (175)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhhhh
Confidence 456778889999999999999999999999999898887665532 0000000000 00000 000 0011112222
Q ss_pred hhcCCceEecCCCccccccccccccCCC-ceEEEEeceecccccccCCcccccccceeEEEEEeecCCcc-cchhhHHHH
Q 004636 218 FSSNHAVKISPNCPVARLRPLAGKYMPG-EVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSAR-QWHVHELEL 295 (740)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r-~~~~~~~~l 295 (740)
...+.+..+.+.....+..........+ -... ...| +...+..+|++++.....+ .|+++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------l~vP-l~~~~~~~G~l~~~~~~~~~~~~~~e~~l 150 (175)
T COG2203 85 LREGRPVVVEDILQDPRFRDNPLVLLEPPIRSY-------------LGVP-LIAQGELLGLLCVHDSEPRRQWSEEELEL 150 (175)
T ss_pred hcCCceEEeeccccCcccccCHHHHHHHHHHHh-------------eeee-eeECCEeeEEeeeeccCCCCCCCHHHHHH
Confidence 3333333333222211111000000000 0011 1223 2334466777887777666 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004636 296 VEVVADQVAVALSHAAILEE 315 (740)
Q Consensus 296 l~~~a~q~a~al~~a~l~~e 315 (740)
++.+|.|++.|+.+++++++
T Consensus 151 l~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 151 LEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765
No 169
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.65 E-value=0.43 Score=43.24 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=62.0
Q ss_pred cCchHHHHHHHHHHHhcCCeEEEe---CCHHHHHHHH-CCCCeEEEEecCCCCC--CHHHHHHHHHHhhccCCC-CceEE
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMTV---SSVEECFRVV-SHEHQVVFMDVCVPGI--DGYEVAVHIHDKFTRRHE-RPLIV 691 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~~-~~~~dlvl~D~~mp~~--dG~e~~~~Ir~~~~~~~~-~~~II 691 (740)
|.+..-...+..+|+..||+|... .+.++..+.+ +.+||+|.+...+... +..++++.+|+ ..+ .++|+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~----~~~~~~~i~ 85 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKE----AGLDDIPVL 85 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHH----cCCCCCeEE
Confidence 566677788899999999999754 2355666655 5689999998765432 33445555543 333 45454
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEEC
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILK 716 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~K 716 (740)
+.+.........+.+.|+|.|+..
T Consensus 86 -vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 86 -VGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred -EECCCCChhHHHHHHcCCeEEECC
Confidence 566655554567888999888763
No 170
>PRK13558 bacterio-opsin activator; Provisional
Probab=94.43 E-value=1.8 Score=51.54 Aligned_cols=143 Identities=14% Similarity=0.105 Sum_probs=84.8
Q ss_pred HHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccC-CCCcc--eecCCchhHHHHhhc--
Q 004636 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQ-NPVGY--TVPIQLPVINQVFSS-- 220 (740)
Q Consensus 146 l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~-- 220 (740)
+..+++.+..+.++..+.......+....+.+.+.++.++.+...+......... ...+. ......+ ...++.+
T Consensus 290 l~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p-~~~a~~~~~ 368 (665)
T PRK13558 290 VNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGP-AAAALQSVV 368 (665)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCc-hHHHHHhcc
Confidence 4567777888899999999999999998888888888777665544332211110 00000 0001111 1222222
Q ss_pred CCceEecCCCccccccccccccCCCceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHHHHHH
Q 004636 221 NHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300 (740)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll~~~a 300 (740)
+.+..+.+........ . ..|. ..+.+| +...+...|++.+....++.|+++++++++.++
T Consensus 369 ~~~~~~~~~~~~~~~~----~-~~~~-s~~~vP--------------L~~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la 428 (665)
T PRK13558 369 AETEAVESTDVDGVSG----T-VDGS-AVAAVP--------------LVYRETTYGVLVVYTAEPDEIDDRERVVLEALG 428 (665)
T ss_pred CceEEecCCCcccccc----c-cCCc-eEEEEe--------------EEECCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 3333332211100000 0 0111 333444 445677889999999999999999999999999
Q ss_pred HHHHHHHHH
Q 004636 301 DQVAVALSH 309 (740)
Q Consensus 301 ~q~a~al~~ 309 (740)
.+++.||..
T Consensus 429 ~~ia~aI~~ 437 (665)
T PRK13558 429 RAVGAAINA 437 (665)
T ss_pred HHHHHHHHH
Confidence 999999863
No 171
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=94.43 E-value=0.16 Score=59.83 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhh---
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKEG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN--- 529 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~--- 529 (740)
|+.-|.+++..||+||+.-...| .|.|.+. .+ + .|+|.|||.|||.+..+.
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~--~~------------------g---~I~V~DnG~GIp~~~h~~~ki 90 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN--ED------------------G---SITVTDNGRGIPVDIHPKTGK 90 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe--CC------------------C---cEEEEEeCccccCCccCCCCC
Confidence 66788999999999999843334 5555532 11 1 589999999999974432
Q ss_pred -----hhhccccccccc----CCCCCCcchhHHHHHHHHH
Q 004636 530 -----LFTKFAQNQAIA----LRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 530 -----iF~~F~~~~~~~----~~~~~GtGLGLaI~k~iv~ 560 (740)
+|.....+..-. ....+-.|.||+.+..+-+
T Consensus 91 ~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 91 PAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred CchHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 444332221110 0122346999998887776
No 172
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.21 E-value=0.092 Score=62.09 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhh---
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKE---GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN--- 529 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~--- 529 (740)
|+.-+.+++..||+||+.-... ..|.|.+. .+ + .|+|.|||.|||.+..+.
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~--~~------------------g---~I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN--DD------------------G---SVTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe--CC------------------C---cEEEEEeCCCcCccccCcCCC
Confidence 5677899999999999983323 34555432 11 1 389999999999874332
Q ss_pred -----hhhcccccccc----cCCCCCCcchhHHHHHHHHH
Q 004636 530 -----LFTKFAQNQAI----ALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 530 -----iF~~F~~~~~~----~~~~~~GtGLGLaI~k~iv~ 560 (740)
+|.....+..- .....+-.|.||+.+..+-+
T Consensus 84 ~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 84 SAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred CchHHheeeecccCccCCCcceecCCccchhHHHHHHhcC
Confidence 34332221111 11122337999998887765
No 173
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=94.05 E-value=1.1 Score=41.65 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=73.1
Q ss_pred cCchHHHHHHHHHHHhcCCeEEE---eCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCC-CCceEEEE
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMT---VSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRH-ERPLIVAL 693 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~---a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~-~~~~II~l 693 (740)
|-+..-...+..+|+..||+|+- ..+.++.++.. +..+|+|-+...|.. ..+..+++.+..+... ..++ +++
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~--~~~~~~~~~~~l~~~gl~~~~-viv 88 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGH--GEIDCKGLRQKCDEAGLEGIL-LYV 88 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc--CHHHHHHHHHHHHHCCCCCCE-EEe
Confidence 44555667788999999999984 35677777765 568999988876642 2323333333222222 2333 445
Q ss_pred ecCC--CHH----HHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 694 TGST--DNL----TKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 694 t~~~--~~~----~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
.+.. .++ ...++.+.|++......-+++++.+.+++.|+
T Consensus 89 GG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 89 GGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred cCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 5531 122 23468899999999988999999999988764
No 174
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.05 Score=63.86 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccc
Q 004636 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (740)
Q Consensus 459 ~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~ 538 (740)
+-.-|+--|++||+.+.. -.|.|. .... +.-.|.|+|||.||++++++-.+.++.+.+
T Consensus 23 rPaSVVKELVENSlDAGA-t~I~I~--ve~g-------------------G~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 23 RPASVVKELVENSLDAGA-TRIDIE--VEGG-------------------GLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred cHHHHHHHHHhcccccCC-CEEEEE--EccC-------------------CccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 344688999999999754 234443 3222 123599999999999999999999998876
Q ss_pred c
Q 004636 539 A 539 (740)
Q Consensus 539 ~ 539 (740)
-
T Consensus 81 I 81 (638)
T COG0323 81 I 81 (638)
T ss_pred C
Confidence 3
No 175
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.78 E-value=0.11 Score=47.61 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEEEe
Q 004636 462 QTLLNVVGNAVKFTKEGNISITGFVA 487 (740)
Q Consensus 462 qVl~NLl~NAik~t~~g~i~i~~~~~ 487 (740)
-+...|+.||+||...|.|+|.....
T Consensus 66 Yl~NELiENAVKfra~geIvieasl~ 91 (184)
T COG5381 66 YLANELIENAVKFRATGEIVIEASLY 91 (184)
T ss_pred HHHHHHHHhhhcccCCCcEEEEEEec
Confidence 44567999999999999999887654
No 176
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=93.53 E-value=3.2 Score=46.46 Aligned_cols=165 Identities=18% Similarity=0.158 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCCCCceEEEEEeeccCCCC--cceecCCchhHHHHhhcC
Q 004636 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPV--GYTVPIQLPVINQVFSSN 221 (740)
Q Consensus 144 ~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 221 (740)
+.+++++..+..-.+.+..+......+...++++..++...+.++.....+..+...... ........+....++.++
T Consensus 34 ~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~~ 113 (550)
T COG3604 34 RILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKAG 113 (550)
T ss_pred HHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhCC
Confidence 456777877777778888888888888888888887888777665222222222111110 012345678899999999
Q ss_pred CceEe-cCCCccccccccccccCCC----ceEEEEeceecccccccCCcccccccceeEEEEEeecCCcccchhhHHHHH
Q 004636 222 HAVKI-SPNCPVARLRPLAGKYMPG----EVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELV 296 (740)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~~~~~~~g----~~~~~~~p~~~~~~~~~~~~p~l~~~~~~~~vl~l~~~~~r~~~~~~~~ll 296 (740)
.+..+ ..++....- ..+....+ -..-+.+| +......+|++.+....+..+...--+.+
T Consensus 114 ~p~~~~~~d~~~~~~--~~~l~~~~~~~~~~a~i~~P--------------L~~~~~~~G~Ltld~~~~~~f~~~~~~~l 177 (550)
T COG3604 114 RPLVFHPADSLFPDP--YDGLLPDTEGNKKHACIGVP--------------LKSGDKLIGALTLDHTEPDQFDEDLDEEL 177 (550)
T ss_pred CcEEEecCCcccCCc--ccccccCccCCcceeEEeee--------------eeeCCeeeeeEEeeeecccccchhHHHHH
Confidence 99888 444322110 00000000 11222333 33455677888887777777766666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 297 EVVADQVAVALSHAAILEESMRARDLLM 324 (740)
Q Consensus 297 ~~~a~q~a~al~~a~l~~e~~~~~~~L~ 324 (740)
+.++.-++.+..++.+.++..+.++.+.
T Consensus 178 r~La~~a~la~~~~~l~~~l~~~~~~l~ 205 (550)
T COG3604 178 RFLAALAALAVANALLHRELSSLKERLE 205 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776444443333
No 177
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.38 E-value=7.3 Score=36.92 Aligned_cols=182 Identities=15% Similarity=0.115 Sum_probs=105.7
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHH
Q 004636 347 FLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREV 426 (740)
Q Consensus 347 fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~ 426 (740)
+.+-++||+=+|..+|..-.++|.+...+++ .++.|..++.... ..|.|+|+.-|..-..-..+|-.+.=.-+
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~addD---Am~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek~A 90 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADDD---AMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEKAA 90 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccHH---HHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHHHH
Confidence 5677999999999999999999998776644 3556667766654 56789998765443333456655443333
Q ss_pred HHHHhhhhhhcCeEEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEEecccccccCCCCCCcCCCC
Q 004636 427 LNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDSRAPEFFPVPI 505 (740)
Q Consensus 427 ~~~~~~~~~~k~i~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~ 505 (740)
.+.+. ..+-++..+.++.+ + .+.+. ..+.||+--|--.-|.| .+.++... .+.
T Consensus 91 ~~~~a----~ekpe~~W~g~r~~---~--~Kn~v-kllLNl~lia~~aiPrGG~~~vtle~--~e~-------------- 144 (214)
T COG5385 91 QDFFA----NEKPELTWNGPRAI---L--PKNRV-KLLLNLFLIAYGAIPRGGSLVVTLEN--PET-------------- 144 (214)
T ss_pred HHHHh----ccCCcccccCChhh---c--CcchH-HHHHHHHHHHcccCCCCCeeEEEeec--CCc--------------
Confidence 33332 22234555544332 1 23333 46789888777776755 45444321 110
Q ss_pred CCceEEEEEEEecCCC--CCcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEee
Q 004636 506 ENHFYLRVQVKDSGSG--ISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (740)
Q Consensus 506 ~~~~~v~i~V~D~G~G--I~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~ 571 (740)
.-+|++.-.|+- .||+.++ - +.+... ...-++.-.--+-.--+++.-|++|.++..
T Consensus 145 ----d~rfsi~akG~m~Rvppk~le----l-~~G~~~-eE~vdahsVQpyYt~lLa~eAgm~I~v~~~ 202 (214)
T COG5385 145 ----DARFSIIAKGRMMRVPPKFLE----L-HSGEPP-EEAVDAHSVQPYYTLLLAEEAGMTISVHAT 202 (214)
T ss_pred ----CceEEEEecCccccCCHHHHh----h-hcCCCc-cccCCCccccHHHHHHHHHHcCCeEEEEec
Confidence 135666666653 3443222 1 122111 111234444456667789999999999986
No 178
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=93.08 E-value=2.1 Score=40.00 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=83.3
Q ss_pred ecCchHHHHHHHHHHHhcCCeEEE---eCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEE
Q 004636 618 MDENGVSRSVTKGLLLHLGCDVMT---VSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVAL 693 (740)
Q Consensus 618 vdD~~~~~~~l~~~L~~~g~~v~~---a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~l 693 (740)
.|-+..-.+++.+.|+..||+|+. ..+.+|+.+.. ++..|+|.+... .-...+++..+++..+.......++++
T Consensus 22 lDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl--~g~h~~l~~~lve~lre~G~~~i~v~~ 99 (143)
T COG2185 22 LDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSL--DGGHLTLVPGLVEALREAGVEDILVVV 99 (143)
T ss_pred ccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEec--cchHHHHHHHHHHHHHHhCCcceEEee
Confidence 477888889999999999999984 57889988865 677887776542 334577777776666555544434456
Q ss_pred ecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 694 TGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
.+.-.+++..+..+.|++.++.--.+..+...-+...+.
T Consensus 100 GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 100 GGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred cCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 777777888888889999999877777777766665544
No 179
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=92.90 E-value=0.26 Score=57.79 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhh---cCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCC--------h
Q 004636 459 RLMQTLLNVVGNAVK---FTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD--------I 527 (740)
Q Consensus 459 ~L~qVl~NLl~NAik---~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~--------l 527 (740)
...+++.-||+||+. ......|.|.+. .+ -.|+|.|||.|||.+. +
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~--~d---------------------~~I~V~DnGrGIp~~~h~~~g~~~~ 86 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAGFASIIMVILH--QD---------------------QSIEVFDNGRGMPVDIHPKEGVSAV 86 (625)
T ss_pred CcceeehhhhhcccchhhcCCCCEEEEEEe--CC---------------------CeEEEEecCCccCcccccccCCcHH
Confidence 346777788888887 323345555532 11 1489999999999988 7
Q ss_pred hhhh-hccccccc---ccCCCCCCcchhHHHHHHHHH
Q 004636 528 PNLF-TKFAQNQA---IALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 528 ~~iF-~~F~~~~~---~~~~~~~GtGLGLaI~k~iv~ 560 (740)
+-+| .....++- ......+-.|.||+.+..+-+
T Consensus 87 e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~ 123 (625)
T TIGR01055 87 EVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSK 123 (625)
T ss_pred HHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcC
Confidence 7777 33221111 011112336999999988877
No 180
>PRK14083 HSP90 family protein; Provisional
Probab=92.82 E-value=0.086 Score=61.28 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCCC---------CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhh
Q 004636 462 QTLLNVVGNAVKFTKE---------GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (740)
Q Consensus 462 qVl~NLl~NAik~t~~---------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~ 532 (740)
..+.+|+.||..+... +.|.|... ... .-.|.|.|||+||+.+++.+.|-
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~--------------------~~~l~I~DnGiGmt~eel~~~l~ 84 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAG--------------------GGTLIVEDNGIGLTEEEVHEFLA 84 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCC--------------------CcEEEEEeCCCCCCHHHHHHHHh
Confidence 4578999999888532 34555431 110 13689999999999999998763
Q ss_pred ccccccc-c------cCCCCCCcchhHHHHHHH
Q 004636 533 KFAQNQA-I------ALRNSSGSGLGLAICKRF 558 (740)
Q Consensus 533 ~F~~~~~-~------~~~~~~GtGLGLaI~k~i 558 (740)
....... . ...-.|.-|+|+.-|-.+
T Consensus 85 ~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v 117 (601)
T PRK14083 85 TIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV 117 (601)
T ss_pred hhccchhhhhhhcccccccccccccceEEEEEe
Confidence 3221111 0 011235678887655433
No 181
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.67 E-value=2.4 Score=38.97 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=69.6
Q ss_pred cCchHHHHHHHHHHHhcCCeEEE---eCCHHHHHHHH-CCCCeEEEEecCCCC-CCH-HHHHHHHHHhhccCCCCceEEE
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMT---VSSVEECFRVV-SHEHQVVFMDVCVPG-IDG-YEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~---a~~g~eal~~~-~~~~dlvl~D~~mp~-~dG-~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
|-+..-...+..+|+..||+|+- ..+.++.++.. ...+|+|-+...|.. |.. -++.+.+|+. ....++|+
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~---gl~~v~vi- 85 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA---GLKDILLY- 85 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHC---CCCCCeEE-
Confidence 44555667888899999999984 34567777755 568999988876643 222 3444444432 11234444
Q ss_pred EecCC--C----HHHHHHHHHcCCCeEEECCCCHHHHHHHHH
Q 004636 693 LTGST--D----NLTKDNCMRVGMDGVILKPVSLEKMRSVLS 728 (740)
Q Consensus 693 lt~~~--~----~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~ 728 (740)
+.+.. . .++..+..+.|++......-+++++.+.|+
T Consensus 86 vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 86 VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 55542 2 334466888999999998888888887765
No 182
>PRK05218 heat shock protein 90; Provisional
Probab=92.48 E-value=0.34 Score=56.81 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=37.0
Q ss_pred EEEEEecCCCCCcCChhhhhhccccccc------------ccCCCCCCcchhHHHHHHHHHHcCCEEEEEeecCC
Q 004636 512 RVQVKDSGSGISPQDIPNLFTKFAQNQA------------IALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~~iF~~F~~~~~------------~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g 574 (740)
.|.|.|||.||+.+++..-|....+... ....-.+-.|+|+.-|-. .+-++.|.|...|
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~----va~~v~V~Sr~~~ 144 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM----VADKVTVITRSAG 144 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh----ccCEEEEEEcCCC
Confidence 4899999999999999987754332210 011123557888864322 3457788776433
No 183
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.12 E-value=0.91 Score=48.96 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=56.9
Q ss_pred CCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEe-cCCCHHHHHHHHHcCCCeEE
Q 004636 636 GCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALT-GSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 636 g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt-~~~~~~~~~~~l~~Ga~~~i 714 (740)
|+++..+.+..++-..+. .-.+|++|..+ ...+ ++.. ..+++.+++++ ...+.+....++++|+.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-----~~~~--~~~~---~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l 69 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA-RAPLVLVDADM-----AEAC--AAAG---LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVA 69 (322)
T ss_pred CCceEEccCchhhhhccc-cCCeEEECchh-----hhHH--Hhcc---CCCCCCEEEEeCCCCCHHHHHHHHHhChhhee
Confidence 566777777666544333 34788998744 1111 1111 12233344444 45678888999999999999
Q ss_pred ECCCCHHHHHHHHHHHH
Q 004636 715 LKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 715 ~KP~~~~~L~~~l~~~l 731 (740)
.+|++.++|.+.+.++.
T Consensus 70 ~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 70 VLPEAEGWLVELLADLD 86 (322)
T ss_pred eCCCCHHHHHHHHHhhc
Confidence 99999999999998874
No 184
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=90.43 E-value=1.5 Score=39.63 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCeEEEeCCHHHHHHHHCCC--CeEEEEecCCCC--CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHH
Q 004636 626 SVTKGLLLHLGCDVMTVSSVEECFRVVSHE--HQVVFMDVCVPG--IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLT 701 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~~a~~g~eal~~~~~~--~dlvl~D~~mp~--~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~ 701 (740)
..+...|++.|++|+.+.+.++++..++.. .+.|++|+. ++ ....+++++||. .+...||.+++.....+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~----~~~~iPVFl~~~~~~~~~ 81 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRE----RNFGIPVFLLAERDTTED 81 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHH----HSTT-EEEEEESCCHHHC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHH----hCCCCCEEEEecCCCccc
Confidence 345667777899999999999999999654 477999985 11 134566777754 456788888887554443
Q ss_pred HHHHHHcCCCeEEECCCC-HHHHHHHHHHH
Q 004636 702 KDNCMRVGMDGVILKPVS-LEKMRSVLSDL 730 (740)
Q Consensus 702 ~~~~l~~Ga~~~i~KP~~-~~~L~~~l~~~ 730 (740)
.-...-.-+++|+...-+ ++.....|.++
T Consensus 82 l~~~~l~~v~~~i~l~~~t~~fia~rI~~A 111 (115)
T PF03709_consen 82 LPAEVLGEVDGFIWLFEDTAEFIARRIEAA 111 (115)
T ss_dssp CCHHHHCCESEEEETTTTTHHHHHHHHHHH
T ss_pred CCHHHHhhccEEEEecCCCHHHHHHHHHHH
Confidence 333344568899998765 44444445443
No 185
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=89.98 E-value=0.46 Score=55.59 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCC---eEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChh--------h
Q 004636 461 MQTLLNVVGNAVKFTKEG---NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP--------N 529 (740)
Q Consensus 461 ~qVl~NLl~NAik~t~~g---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~--------~ 529 (740)
.+++.-||+||+...-.| .|.|.+. .. + .|+|.|||.|||.+..+ -
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~--~~------------------g---~I~V~DnG~GIp~~~h~~~~~~~~e~ 59 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTID--KD------------------N---SISVEDNGRGIPVEIHPKEKKYAPEV 59 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEe--CC------------------C---eEEEEEeCCceeCCccCcCCCCcHHH
Confidence 345667888898875333 4554432 11 1 58999999999976543 3
Q ss_pred hhhcccccccccC----CCCCCcchhHHHHHHHH
Q 004636 530 LFTKFAQNQAIAL----RNSSGSGLGLAICKRFV 559 (740)
Q Consensus 530 iF~~F~~~~~~~~----~~~~GtGLGLaI~k~iv 559 (740)
+|.....+..-.. ...+-.|.||+.+..+-
T Consensus 60 v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 60 IFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred hhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 3443322221111 11234699999887764
No 186
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=89.40 E-value=23 Score=34.80 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHHhhhhhhcCe
Q 004636 360 HAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKL 439 (740)
Q Consensus 360 ~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~~~~~~~k~i 439 (740)
.+|.+..++|.+...+ +.+..++.|.+++...... +.|.|+--|.... -+.++..++-.-+-.. ....++
T Consensus 2 GAI~NGLELL~~~~~~-~~~~~~~LI~~Sa~~A~aR----l~F~RlAFGaag~-~~~i~~~e~~~~~~~~----~~~~r~ 71 (182)
T PF10090_consen 2 GAINNGLELLDDEGDP-EMRPAMELIRESARNASAR----LRFFRLAFGAAGS-GQQIDLGEARSVLRGY----FAGGRI 71 (182)
T ss_pred cchhhhHHHHcCCCCc-cchHHHHHHHHHHHHHHHH----HHHHHHHcCCCCC-CCCCCHHHHHHHHHHH----HhCCce
Confidence 3677788988876542 3333778888888776644 4567776555433 3567776654433333 333456
Q ss_pred EEEEEeCCCCCcceeccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEec
Q 004636 440 LVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDS 518 (740)
Q Consensus 440 ~l~~~~~~~~p~~v~~D~~~L~qVl~NLl~NAik~t~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~ 518 (740)
.+....+.+.. ++.. -+++.|++-=|...-|. |.|+|....... ...++|.=+
T Consensus 72 ~l~W~~~~~~~-----~k~~-vklllnl~l~a~~alprGG~i~V~~~~~~~--------------------~~~~~v~a~ 125 (182)
T PF10090_consen 72 TLDWQVERDLL-----PKPE-VKLLLNLLLCAEDALPRGGEITVSIEGSEG--------------------DGGWRVRAE 125 (182)
T ss_pred EEEccCccccC-----CHHH-HHHHHHHHHHHHhhcCCCCEEEEEEeccCC--------------------CceEEEEEe
Confidence 66666554411 2333 37899998888888775 567765332211 134666667
Q ss_pred CCCC--CcCChhhhhhcccccccccCCCCCCcchhHHHHHHHHHHcCCEEEEEee
Q 004636 519 GSGI--SPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (740)
Q Consensus 519 G~GI--~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~ 571 (740)
|+.+ +++...- +.-.. ..........=.+....+++..|++|.++..
T Consensus 126 G~~~~~~~~~~~~----L~g~~--~~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 126 GPRARLDPDLWAA----LAGED--PEEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred ccccCCCHHHHHH----hcCCC--CCCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 7654 3332222 21111 0112334455678888999999999999875
No 187
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=88.92 E-value=2.1 Score=38.23 Aligned_cols=112 Identities=14% Similarity=0.247 Sum_probs=77.4
Q ss_pred CCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHH-HHHHhhccCCC
Q 004636 609 NFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAV-HIHDKFTRRHE 686 (740)
Q Consensus 609 ~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~-~Ir~~~~~~~~ 686 (740)
.+.|.+.+.||.|..-......+|.+.+.+|+.-.+..+ + ...||++++.+-.+--+-..+-. ++.+... -.
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~--mt 81 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----LPPAHYDMMLLGVAVTFRENLTMQHERLAKALS--MT 81 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecccccc----cChhhhceeeecccccccCCchHHHHHHHHHHh--hh
Confidence 356789999999999999999999999999987655332 3 34689999998776444333221 1111111 12
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHH
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVL 727 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l 727 (740)
+..|+++-. ...-..++..+-|+-+++.||++...|...+
T Consensus 82 d~vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 82 DFVILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred cceEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 334665543 3444567888999999999999999988743
No 188
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.90 E-value=3.8 Score=41.79 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=71.7
Q ss_pred ecCchHHHHHHHHHHHhcCCeEE--EeCCHHHHHHHHCCCCeEEEEecCCC---------CC-CHHHHHHHHHHhhccCC
Q 004636 618 MDENGVSRSVTKGLLLHLGCDVM--TVSSVEECFRVVSHEHQVVFMDVCVP---------GI-DGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 618 vdD~~~~~~~l~~~L~~~g~~v~--~a~~g~eal~~~~~~~dlvl~D~~mp---------~~-dG~e~~~~Ir~~~~~~~ 685 (740)
..|.....+..+.+.+ .||.|. +++|...|-++..-.++.| || +. | .++++.|++.
T Consensus 106 lpd~~~tv~aa~~L~~-~Gf~vlpyc~dd~~~ar~l~~~G~~~v-----mPlg~pIGsg~Gi~~-~~~I~~I~e~----- 173 (248)
T cd04728 106 LPDPIETLKAAEILVK-EGFTVLPYCTDDPVLAKRLEDAGCAAV-----MPLGSPIGSGQGLLN-PYNLRIIIER----- 173 (248)
T ss_pred ccCHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHcCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh-----
Confidence 4466666666665554 599987 5567777777666677877 66 12 3 6778777642
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCeEE-----ECCCCHHHHHHHHHHHH
Q 004636 686 ERPLIVALTGSTDNLTKDNCMRVGMDGVI-----LKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 686 ~~~~II~lt~~~~~~~~~~~l~~Ga~~~i-----~KP~~~~~L~~~l~~~l 731 (740)
...|||+=.+-..+++..++++.|+|+++ .|.-++..+.......+
T Consensus 174 ~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 174 ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 23567777788999999999999999986 46556777766666554
No 189
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=87.93 E-value=0.95 Score=53.99 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChh------
Q 004636 458 KRLMQTLLNVVGNAVKFTKE---GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP------ 528 (740)
Q Consensus 458 ~~L~qVl~NLl~NAik~t~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~------ 528 (740)
.-|.+++.-+++||+.-.-. ..|.|.+. .+ + .|+|.|||.|||.+..+
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~--~d------------------g---sIsV~DnGrGIPvd~h~~~g~~~ 92 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIH--AD------------------G---SVSVSDNGRGIPTDIHPEEGVSA 92 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEc--CC------------------C---eEEEEEcCCcccCCcccccCCch
Confidence 56899999999999983323 34555432 11 1 58999999999997332
Q ss_pred --hhhhccccccc----ccCCCCCCcchhHHHHHHHHH
Q 004636 529 --NLFTKFAQNQA----IALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 529 --~iF~~F~~~~~----~~~~~~~GtGLGLaI~k~iv~ 560 (740)
-+|.....+.. ...-..+=.|.|++.+..+-+
T Consensus 93 ~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svvNAlS~ 130 (756)
T PRK14939 93 AEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSE 130 (756)
T ss_pred hhheeeeecccCCCCCCcccccCCccCccceEeehccC
Confidence 23322221111 111112336889988877765
No 190
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=87.88 E-value=8.5 Score=34.54 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHHhcCCeEEEe---CCHHHHHHHH-CCCCeEEEEecC-CCCCCHHHHHHHHHHhhccCCCCceEEEEe
Q 004636 620 ENGVSRSVTKGLLLHLGCDVMTV---SSVEECFRVV-SHEHQVVFMDVC-VPGIDGYEVAVHIHDKFTRRHERPLIVALT 694 (740)
Q Consensus 620 D~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~~-~~~~dlvl~D~~-mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt 694 (740)
-++.-...+..+|++.|++|... .+.++..+.+ ..+||+|.+... .+. ++...++-+..+...+.++|+ +.
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~---~~~~~~l~~~~k~~~p~~~iv-~G 87 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPN---LPEAKRLARAIKERNPNIPIV-VG 87 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTH---HHHHHHHHHHHHTTCTTSEEE-EE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCc---HHHHHHHHHHHHhcCCCCEEE-EE
Confidence 34666788899999999999865 2345555655 468999999884 333 223333323333455666665 55
Q ss_pred cCCCHHHHHHHHH--cCCCeEEECC
Q 004636 695 GSTDNLTKDNCMR--VGMDGVILKP 717 (740)
Q Consensus 695 ~~~~~~~~~~~l~--~Ga~~~i~KP 717 (740)
+..-......+++ .|+|..+.-.
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred CCchhcChHHHhccCcCcceecCCC
Confidence 5544455566665 7888877643
No 191
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.87 E-value=5.7 Score=40.09 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=60.9
Q ss_pred eEEee----cCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHH-CCCCeEEEEecCCCCC-C-HHHHHHHHHHhhcc
Q 004636 614 KVLVM----DENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVV-SHEHQVVFMDVCVPGI-D-GYEVAVHIHDKFTR 683 (740)
Q Consensus 614 ~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~-~~~~dlvl~D~~mp~~-d-G~e~~~~Ir~~~~~ 683 (740)
+|++. |.+..-...+..+|+..||+|+... ..++.++.+ +.+||+|.+...|+.. . --+++++++ .
T Consensus 90 ~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~----~ 165 (213)
T cd02069 90 KIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMN----R 165 (213)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHH----h
Confidence 45555 6777777888999999999998653 356666666 5689999999888632 1 133444443 2
Q ss_pred CCCCceEEEEecCC-CHHHHHH---HHHcCCCeEEE
Q 004636 684 RHERPLIVALTGST-DNLTKDN---CMRVGMDGVIL 715 (740)
Q Consensus 684 ~~~~~~II~lt~~~-~~~~~~~---~l~~Ga~~~i~ 715 (740)
....++|+ +.+.. +.+...+ +-..|||.|-.
T Consensus 166 ~~~~~~i~-vGG~~~~~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 166 RGIKIPLL-IGGAATSRKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred cCCCCeEE-EEChhcCHHHHhhhhccccCCCceEec
Confidence 34456665 44433 3332221 23469998865
No 192
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=86.77 E-value=8.8 Score=38.30 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=61.7
Q ss_pred eEEee----cCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHH-CCCCeEEEEecCCCCC--CHHHHHHHHHHhhcc
Q 004636 614 KVLVM----DENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVV-SHEHQVVFMDVCVPGI--DGYEVAVHIHDKFTR 683 (740)
Q Consensus 614 ~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~-~~~~dlvl~D~~mp~~--dG~e~~~~Ir~~~~~ 683 (740)
+|++. |-+..-...+..+|+..||+|+... +.++.++.+ ..+||+|-+...|+.. +..++++.+|+
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~---- 159 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKE---- 159 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHH----
Confidence 55555 6666667888899999999998542 356666665 5689999999877653 22344445543
Q ss_pred CCC--CceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 684 RHE--RPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 684 ~~~--~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
..+ .++|+ +.+..-..+ -+-+.|||.|-.
T Consensus 160 ~~~~~~~~i~-vGG~~~~~~--~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKVM-VGGAPVNQE--FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCeEE-EECCcCCHH--HHHHcCCcEEEC
Confidence 333 55565 455443332 456779998865
No 193
>PRK00208 thiG thiazole synthase; Reviewed
Probab=86.34 E-value=6.3 Score=40.31 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=71.1
Q ss_pred ecCchHHHHHHHHHHHhcCCeEE--EeCCHHHHHHHHCCCCeEEEEecCCC---------CC-CHHHHHHHHHHhhccCC
Q 004636 618 MDENGVSRSVTKGLLLHLGCDVM--TVSSVEECFRVVSHEHQVVFMDVCVP---------GI-DGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 618 vdD~~~~~~~l~~~L~~~g~~v~--~a~~g~eal~~~~~~~dlvl~D~~mp---------~~-dG~e~~~~Ir~~~~~~~ 685 (740)
..|.....+..+.+.+ .||.|. +++|..+|-++..-.++.| || +. | .+.++.|++.
T Consensus 106 lpd~~~tv~aa~~L~~-~Gf~vlpyc~~d~~~ak~l~~~G~~~v-----mPlg~pIGsg~gi~~-~~~i~~i~e~----- 173 (250)
T PRK00208 106 LPDPIETLKAAEILVK-EGFVVLPYCTDDPVLAKRLEEAGCAAV-----MPLGAPIGSGLGLLN-PYNLRIIIEQ----- 173 (250)
T ss_pred CcCHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHcCCCEe-----CCCCcCCCCCCCCCC-HHHHHHHHHh-----
Confidence 3455556666655554 599987 5567777777666677877 66 11 3 6777777642
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCeEE-----ECCCCHHHHHHHHHHHH
Q 004636 686 ERPLIVALTGSTDNLTKDNCMRVGMDGVI-----LKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 686 ~~~~II~lt~~~~~~~~~~~l~~Ga~~~i-----~KP~~~~~L~~~l~~~l 731 (740)
...|||+=.+-..+++..++++.|+|+++ .|--++..+.......+
T Consensus 174 ~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 174 ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 23568777888999999999999999986 46556777776666554
No 194
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=85.12 E-value=0.88 Score=53.83 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=17.5
Q ss_pred EEEEEEecCCCCCcCChhhhh
Q 004636 511 LRVQVKDSGSGISPQDIPNLF 531 (740)
Q Consensus 511 v~i~V~D~G~GI~~e~l~~iF 531 (740)
..+.|.|||+||+++++.+-+
T Consensus 72 ~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred CEEEEEECCCCCCHHHHHHHh
Confidence 368999999999999876654
No 195
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=84.36 E-value=4 Score=41.58 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHh----hhhhHHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecCC
Q 004636 123 KNKAAELDREMG----LIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTR 186 (740)
Q Consensus 123 ~~~a~~l~~e~~----~~~~~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~~ 186 (740)
+.++++|+.+.. .+++.+.....+..++.++-++-+.+++..+....+...++++.|.+++.+.
T Consensus 53 R~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~ 120 (225)
T PF04340_consen 53 RERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDD 120 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 344455555543 4455555567788899999999999999999999999999999998877664
No 196
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=82.54 E-value=14 Score=44.33 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=73.8
Q ss_pred cCchHHHHHHHHHHHhcCCeEEEe---CCHHHHHHHH-CCCCeEEEEecCCCCC--CHHHHHHHHHHhhccCC-CCceEE
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMTV---SSVEECFRVV-SHEHQVVFMDVCVPGI--DGYEVAVHIHDKFTRRH-ERPLIV 691 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~~-~~~~dlvl~D~~mp~~--dG~e~~~~Ir~~~~~~~-~~~~II 691 (740)
|.+..-...+..+|+..||+|..- .+.+++.+.. ...+|+|.+...+... ..-++++.||+ .. +..+ |
T Consensus 593 d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~----~G~~~v~-v 667 (714)
T PRK09426 593 DGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKK----LGREDIM-V 667 (714)
T ss_pred cchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHh----cCCCCcE-E
Confidence 445555678889999999999732 4567777765 5678888776554332 23344555542 32 2232 4
Q ss_pred EEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
++.+...+++...+.++|+|+|+..=.+..+..+.+.+.|..
T Consensus 668 l~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 668 VVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLSA 709 (714)
T ss_pred EEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 456553455556778899999999999999999888887744
No 197
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=82.16 E-value=15 Score=35.54 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=72.0
Q ss_pred eEEeecCchHHHHHHHHHHHhcC--CeEEEeCCHHHHHHHHC---CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCc
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLG--CDVMTVSSVEECFRVVS---HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~~~---~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~ 688 (740)
++.|+.+++..++.++++++.+| |+|....|.+++++-+. ..+.|+..+...++ . ...||+.... ..|
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~---~~~ir~~~~~--~~p 105 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--V---EPEIREAHRK--GEP 105 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--h---HHHHHHhhcc--CCc
Confidence 68999999999999999999987 67889999999998763 24678888887765 3 4455544322 445
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCeEEECCCC-----HHHHHHHHHHHHccccc
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVS-----LEKMRSVLSDLLEHRVL 736 (740)
Q Consensus 689 ~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~-----~~~L~~~l~~~l~~~~~ 736 (740)
.+|++.+..-+....+. .||..-+=+ ...+.-.|.++++++++
T Consensus 106 ~LIvvGg~gvp~evye~-----aDynlgvg~qpHSvrAAlAI~LDRL~~g~el 153 (176)
T PRK03958 106 LLIVVGAEKVPREVYEL-----ADWNVAVGNQPHSEVAALAVFLDRLFEGKEL 153 (176)
T ss_pred EEEEEcCCCCCHHHHhh-----CCEEeccCCCChHHHHHHHHHHHHhcCCcch
Confidence 55666666555544332 234332211 33344455666666543
No 198
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=81.69 E-value=24 Score=35.15 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=61.5
Q ss_pred cCCeEE-EeCCHHHHHHHHCCCCeEEEEecCCCCC--------CHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHH
Q 004636 635 LGCDVM-TVSSVEECFRVVSHEHQVVFMDVCVPGI--------DGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNC 705 (740)
Q Consensus 635 ~g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~--------dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~ 705 (740)
.|..+- .+.+..|+.+......|.|.++-..|.. .|++.++++++.. +..||++..+- +.+....+
T Consensus 103 ~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~v~a~GGI-~~~~i~~~ 177 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV----GDIPIVAIGGI-TPENAPEV 177 (212)
T ss_pred CCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCc-CHHHHHHH
Confidence 344433 4567778777777788999887555533 3588888886532 22567765554 67788899
Q ss_pred HHcCCCeEEE-----CCCCHHHHHHHHHHHH
Q 004636 706 MRVGMDGVIL-----KPVSLEKMRSVLSDLL 731 (740)
Q Consensus 706 l~~Ga~~~i~-----KP~~~~~L~~~l~~~l 731 (740)
+++|++++.. +.-++.+....+.+.+
T Consensus 178 ~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 178 LEAGADGVAVVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred HHcCCCEEEEeHHhhcCCCHHHHHHHHHHHH
Confidence 9999999885 5556666655555543
No 199
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=80.69 E-value=58 Score=31.63 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEe
Q 004636 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWM 183 (740)
Q Consensus 143 ~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~ 183 (740)
...+-.-+.+|-+.-+.++.....+.++...++++..+++.
T Consensus 21 Le~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~ 61 (174)
T PF11849_consen 21 LEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYC 61 (174)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 34455566677777889999999999999999999777766
No 200
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=80.32 E-value=1.5 Score=50.50 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=28.9
Q ss_pred EEEEEecCCCCCcCChhhhhh--------ccccc---ccccCCCCCCcchhHHHHHHHHH
Q 004636 512 RVQVKDSGSGISPQDIPNLFT--------KFAQN---QAIALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~~iF~--------~F~~~---~~~~~~~~~GtGLGLaI~k~iv~ 560 (740)
.++|+|||+||..+++..-.. .|... +.....=-|-.|+|++-|--+++
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAd 134 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVAD 134 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeee
Confidence 589999999999988754321 12111 11011113567999987765543
No 201
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=80.25 E-value=14 Score=36.81 Aligned_cols=92 Identities=12% Similarity=0.182 Sum_probs=57.7
Q ss_pred cCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHH-CCCCeEEEEecCCCCCC-H-HHHHHHHHHhhccCCCCceEEE
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVV-SHEHQVVFMDVCVPGID-G-YEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~-~~~~dlvl~D~~mp~~d-G-~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
|.+..-...+..+|+..||+|+... ..++.++.+ ...||+|.+...|+..- . .++++++|+.. ..+.++|+
T Consensus 95 d~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~--~~~~v~i~- 171 (197)
T TIGR02370 95 DVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEG--YRDSVKFM- 171 (197)
T ss_pred chhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcC--CCCCCEEE-
Confidence 3455566777889999999999543 356666666 46899999998776432 1 33444444321 12345555
Q ss_pred EecCCCHHHHHHHHHcCCCeEEE
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.+..-.. .-+.+.|+|.|-.
T Consensus 172 vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 172 VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred EEChhcCH--HHHHHhCCcEEeC
Confidence 55554432 3466789999864
No 202
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=77.50 E-value=20 Score=42.66 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=60.1
Q ss_pred eEEeecCch-HH-----HHHHHHHHHhcCCeEEEeCCHHHHHHHHCC--CCeEEEEecCCCCCCHHHHHHHHHHhhccCC
Q 004636 614 KVLVMDENG-VS-----RSVTKGLLLHLGCDVMTVSSVEECFRVVSH--EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 614 ~ILIvdD~~-~~-----~~~l~~~L~~~g~~v~~a~~g~eal~~~~~--~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~ 685 (740)
+|+|||++- .+ ...+..-|++.||+|..+.+..++....+. ..+.|++|..-. ..++++++|+ .+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~ 74 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQ----LN 74 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHH----hC
Confidence 567776653 22 334556677889999999999999998764 457788885322 3557777754 34
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCeEEECCC
Q 004636 686 ERPLIVALTGSTDNLTKDNCMRVGMDGVILKPV 718 (740)
Q Consensus 686 ~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~ 718 (740)
...||+++.............-.-.++|+..--
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYAL 107 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeecc
Confidence 567788776543322211122223566666443
No 203
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=77.13 E-value=26 Score=35.36 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=53.4
Q ss_pred HHHh-cCCeEE-EeCCHHHHHHHHCCCCeEEEEecC-------CCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHH
Q 004636 631 LLLH-LGCDVM-TVSSVEECFRVVSHEHQVVFMDVC-------VPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLT 701 (740)
Q Consensus 631 ~L~~-~g~~v~-~a~~g~eal~~~~~~~dlvl~D~~-------mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~ 701 (740)
..++ .|..+. .+.+.+++.......+|++.+... .+...+++.++++++.. ..||++..+-.+.++
T Consensus 113 ~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~ 187 (221)
T PRK01130 113 RIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-----GCPVIAEGRINTPEQ 187 (221)
T ss_pred HHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHH
Confidence 3344 565554 456778877666667887755321 12223478888886532 356887777778899
Q ss_pred HHHHHHcCCCeEEE
Q 004636 702 KDNCMRVGMDGVIL 715 (740)
Q Consensus 702 ~~~~l~~Ga~~~i~ 715 (740)
..++++.|+|+++.
T Consensus 188 ~~~~l~~GadgV~i 201 (221)
T PRK01130 188 AKKALELGAHAVVV 201 (221)
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999875
No 204
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=76.11 E-value=53 Score=34.24 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEec---CCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHH
Q 004636 626 SVTKGLLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMDV---CVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLT 701 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D~---~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~ 701 (740)
+.+....+..|..+. .+.|.+|+..+....+|+|-..- .....| ++.+.++.+.. ....++|+.++-.+.++
T Consensus 150 ~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d-~~~~~~l~~~~---p~~~~vIaegGI~t~ed 225 (260)
T PRK00278 150 KELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVD-LETTERLAPLI---PSDRLVVSESGIFTPED 225 (260)
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCC-HHHHHHHHHhC---CCCCEEEEEeCCCCHHH
Confidence 333344456798866 67888888776666778765431 112223 66666665432 12336888999999999
Q ss_pred HHHHHHcCCCeEEE-----CCCCHHHHHH
Q 004636 702 KDNCMRVGMDGVIL-----KPVSLEKMRS 725 (740)
Q Consensus 702 ~~~~l~~Ga~~~i~-----KP~~~~~L~~ 725 (740)
..++.++|+|+++. ||-++.+...
T Consensus 226 ~~~~~~~Gad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 226 LKRLAKAGADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred HHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 99999999999754 5555554433
No 205
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=75.22 E-value=23 Score=42.28 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=51.1
Q ss_pred eEEeecCch-HH-----HHHHHHHHHhcCCeEEEeCCHHHHHHHHCC--CCeEEEEecCCCCCCHHHHHHHHHHhhccCC
Q 004636 614 KVLVMDENG-VS-----RSVTKGLLLHLGCDVMTVSSVEECFRVVSH--EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 614 ~ILIvdD~~-~~-----~~~l~~~L~~~g~~v~~a~~g~eal~~~~~--~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~ 685 (740)
+|++|+++- .+ ...+..-|++.||+|+.+.+..++....+. ..+.|++|.. +. ..++++.+|+ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~----~~ 74 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWD--KY-NLELCEEISK----MN 74 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecc--hh-hHHHHHHHHH----hC
Confidence 466665552 11 344556778889999999999999998764 4477888842 22 2447777753 34
Q ss_pred CCceEEEEecCC
Q 004636 686 ERPLIVALTGST 697 (740)
Q Consensus 686 ~~~~II~lt~~~ 697 (740)
...||+++....
T Consensus 75 ~~~Pv~~~~~~~ 86 (714)
T PRK15400 75 ENLPLYAFANTY 86 (714)
T ss_pred CCCCEEEEcccc
Confidence 566788776543
No 206
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.73 E-value=37 Score=29.42 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=51.6
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEe--CCH----HHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCC
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTV--SSV----EECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHER 687 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a--~~g----~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~ 687 (740)
+||||-..+.+...++..+++.|++.... .++ ..-+...-...|+||+=. +.-+=++...+++..++ ..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t---~~vsH~~~~~vk~~akk--~~ 75 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFT---DYVSHNAMWKVKKAAKK--YG 75 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEe---CCcChHHHHHHHHHHHH--cC
Confidence 48999888888888999999999998887 222 222443335678876633 22344455555554432 22
Q ss_pred ceEEEEecCCCHHHHHHHH
Q 004636 688 PLIVALTGSTDNLTKDNCM 706 (740)
Q Consensus 688 ~~II~lt~~~~~~~~~~~l 706 (740)
.|++. +.........+++
T Consensus 76 ip~~~-~~~~~~~~l~~~l 93 (97)
T PF10087_consen 76 IPIIY-SRSRGVSSLERAL 93 (97)
T ss_pred CcEEE-ECCCCHHHHHHHH
Confidence 45664 3333343444443
No 207
>PTZ00130 heat shock protein 90; Provisional
Probab=74.35 E-value=2.2 Score=50.91 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=27.6
Q ss_pred EEEEEecCCCCCcCChhhhhhcccc-----------cccccCCCCCCcchhHHHHHH
Q 004636 512 RVQVKDSGSGISPQDIPNLFTKFAQ-----------NQAIALRNSSGSGLGLAICKR 557 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~~iF~~F~~-----------~~~~~~~~~~GtGLGLaI~k~ 557 (740)
.|+|.|||+||..+++..-+..-.+ .......-.|-.|+|++-|--
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm 192 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL 192 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee
Confidence 5789999999999987654321111 001011224567999887743
No 208
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=73.72 E-value=4.4 Score=45.83 Aligned_cols=54 Identities=26% Similarity=0.505 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccc
Q 004636 463 TLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (740)
Q Consensus 463 Vl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~ 538 (740)
++-.|+.|++.+... +|.|. +..+ +- =.++|+|||.||-.++++-+-++|.+.+
T Consensus 31 AlKEliENSLDA~ST-~I~V~--vk~G------------------GL-KLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 31 ALKELIENSLDANST-SIDVL--VKDG------------------GL-KLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred HHHHHHhccccCCCc-eEEEE--EecC------------------Ce-EEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 456788888876432 34333 2221 21 3578999999999999999999998765
No 209
>PLN03237 DNA topoisomerase 2; Provisional
Probab=72.53 E-value=5.8 Score=50.32 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=33.0
Q ss_pred EEEEEecCCCCCcCChh--------hhhhcccccccccC----CCCCCcchhHHHHHHHHHHcCCEE
Q 004636 512 RVQVKDSGSGISPQDIP--------NLFTKFAQNQAIAL----RNSSGSGLGLAICKRFVNLMEGHI 566 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~--------~iF~~F~~~~~~~~----~~~~GtGLGLaI~k~iv~~~gG~I 566 (740)
.|+|.|+|.|||-+..+ -||.....+..-.. -.++-.|.|.+.|.-+-+.+--++
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev 178 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIET 178 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEE
Confidence 48999999999986433 24443333322111 113346999998887776544333
No 210
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=71.24 E-value=6 Score=45.68 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhccccc
Q 004636 458 KRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQN 537 (740)
Q Consensus 458 ~~L~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~ 537 (740)
.-|.|++..|+-|++.+... .|.|.+.. ....+.|.|+|.|+..++++.+-++||+.
T Consensus 20 ~sla~~VeElv~NSiDA~At-~V~v~V~~----------------------~t~sv~ViDdG~G~~rdDl~~lg~ry~TS 76 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEAT-CVAVRVNM----------------------ETFSVQVIDDGFGMGRDDLEKLGNRYFTS 76 (1142)
T ss_pred HHHHHHHHHHHhhccccCce-EEEEEecC----------------------ceeEEEEEecCCCccHHHHHHHHhhhhhh
Confidence 35789999999999987432 23333211 13678999999999999999999998876
Q ss_pred c
Q 004636 538 Q 538 (740)
Q Consensus 538 ~ 538 (740)
+
T Consensus 77 K 77 (1142)
T KOG1977|consen 77 K 77 (1142)
T ss_pred h
Confidence 4
No 211
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.44 E-value=27 Score=27.69 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.2
Q ss_pred HHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 004636 347 FLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATL 395 (740)
Q Consensus 347 fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~l 395 (740)
.+...-||+.|-|..|.|+.++ ...++..+|++.+.+..+....+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999998874 23455677877777766665443
No 212
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.45 E-value=43 Score=35.86 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHHHHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEecC-----CCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHH
Q 004636 628 TKGLLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMDVC-----VPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLT 701 (740)
Q Consensus 628 l~~~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D~~-----mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~ 701 (740)
+.+.++..|..+. .+.+.++|..+.....|.|++.-. .....-+++++++++.. ..|||+-.+-.+..+
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-----~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV-----SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-----CCCEEEECCCCCHHH
Confidence 3345666787765 578888888877778888887432 11223488888886432 356888778888888
Q ss_pred HHHHHHcCCCeEEE
Q 004636 702 KDNCMRVGMDGVIL 715 (740)
Q Consensus 702 ~~~~l~~Ga~~~i~ 715 (740)
...++..||+++..
T Consensus 176 ~~~al~~GA~gV~i 189 (307)
T TIGR03151 176 MAAAFALGAEAVQM 189 (307)
T ss_pred HHHHHHcCCCEeec
Confidence 99999999999764
No 213
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.14 E-value=50 Score=33.55 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHhcCC-eEEEeCCHHHHHHHHC----CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHH
Q 004636 630 GLLLHLGC-DVMTVSSVEECFRVVS----HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDN 704 (740)
Q Consensus 630 ~~L~~~g~-~v~~a~~g~eal~~~~----~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~ 704 (740)
..|.+.+. -|+...+.++|....+ .... .+.+.|-.-++++.++++++.+....+. .+|-...-.+.++...
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e~a~~ 86 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPG-MILGVGSIVDAATAAL 86 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCC-eEEeeEeCcCHHHHHH
Confidence 44444453 3446677777776543 2333 3455555556888888886554333333 2455555567778888
Q ss_pred HHHcCCCeEEECCCCHHHHHHHHH
Q 004636 705 CMRVGMDGVILKPVSLEKMRSVLS 728 (740)
Q Consensus 705 ~l~~Ga~~~i~KP~~~~~L~~~l~ 728 (740)
+.++|++ |+.-|.--.++.+.-+
T Consensus 87 a~~aGA~-FiVsP~~~~~v~~~~~ 109 (222)
T PRK07114 87 YIQLGAN-FIVTPLFNPDIAKVCN 109 (222)
T ss_pred HHHcCCC-EEECCCCCHHHHHHHH
Confidence 8999998 5555655555554433
No 214
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=67.75 E-value=76 Score=31.27 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCeEE----EeCCHHHHHHHHCCCCeEEEEecC-----CCCCCHHHHHHHHHHhhccCCCCceEEEEecC
Q 004636 626 SVTKGLLLHLGCDVM----TVSSVEECFRVVSHEHQVVFMDVC-----VPGIDGYEVAVHIHDKFTRRHERPLIVALTGS 696 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~----~a~~g~eal~~~~~~~dlvl~D~~-----mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~ 696 (740)
..+.+..++.|..+. ...+..+..+......|.|.+... .....+.+.++++++. ...||+ .++.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~-~~GG 166 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-----LGVKVA-VAGG 166 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-----cCCCEE-EECC
Confidence 334455566777665 445778887766667888777431 1123556777776532 335566 4666
Q ss_pred CCHHHHHHHHHcCCCeEEE
Q 004636 697 TDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 697 ~~~~~~~~~l~~Ga~~~i~ 715 (740)
-+.+...+++++|+|.++.
T Consensus 167 I~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 167 ITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred cCHHHHHHHHhcCCCEEEE
Confidence 6788899999999998764
No 215
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=67.64 E-value=44 Score=27.57 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=49.6
Q ss_pred hHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHH
Q 004636 351 MNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLI 430 (740)
Q Consensus 351 iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~ 430 (740)
+.|-+||-|..|.++..+=.....+++.++.+..+......+..+=+.|. -+ + ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~-~~----~----~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLY-QS----E----DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cC----C----CCCeecHHHHHHHHHHHH
Confidence 57999999999999988876666677777777666655554443333222 11 1 234699999999998876
Q ss_pred h
Q 004636 431 K 431 (740)
Q Consensus 431 ~ 431 (740)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 5
No 216
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=67.49 E-value=67 Score=32.34 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcC-CeEE-EeCCHHHHHHHHCCCCeEEEEecC-------CCCCCHHHHHHHHHHhhccCCCCceEEEEe
Q 004636 624 SRSVTKGLLLHLG-CDVM-TVSSVEECFRVVSHEHQVVFMDVC-------VPGIDGYEVAVHIHDKFTRRHERPLIVALT 694 (740)
Q Consensus 624 ~~~~l~~~L~~~g-~~v~-~a~~g~eal~~~~~~~dlvl~D~~-------mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt 694 (740)
..+.++.. ++.| ..+. .+.+.+++.......+|++..... .+...+++.++++++.. ..||++..
T Consensus 111 ~~~~i~~~-~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-----~ipvia~G 184 (219)
T cd04729 111 LAELIKRI-HEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-----GIPVIAEG 184 (219)
T ss_pred HHHHHHHH-HHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc-----CCCEEEeC
Confidence 33444333 3344 4433 456778887766667887754211 12223478888886532 35688777
Q ss_pred cCCCHHHHHHHHHcCCCeEEEC
Q 004636 695 GSTDNLTKDNCMRVGMDGVILK 716 (740)
Q Consensus 695 ~~~~~~~~~~~l~~Ga~~~i~K 716 (740)
+-.+.++..++++.|+|+++.-
T Consensus 185 GI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 185 RINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 7778899999999999998763
No 217
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.19 E-value=59 Score=32.22 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=49.3
Q ss_pred HHHHhcCCeEEE---eCCHHHHHHHHCCCCeEEEEecCCCCCCH-------HHHHHHHHHhhccCCCCceEEEEecCCCH
Q 004636 630 GLLLHLGCDVMT---VSSVEECFRVVSHEHQVVFMDVCVPGIDG-------YEVAVHIHDKFTRRHERPLIVALTGSTDN 699 (740)
Q Consensus 630 ~~L~~~g~~v~~---a~~g~eal~~~~~~~dlvl~D~~mp~~dG-------~e~~~~Ir~~~~~~~~~~~II~lt~~~~~ 699 (740)
+.+++.|..+.. ..+..+.++.+....|.|+++-.-|+.+| ++.++++++......+..||+ +.+.-..
T Consensus 98 ~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~-v~GGI~~ 176 (210)
T TIGR01163 98 QLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIE-VDGGVND 176 (210)
T ss_pred HHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEE-EECCcCH
Confidence 455556765443 23446666655445677766554444443 445555654433222234554 4555567
Q ss_pred HHHHHHHHcCCCeEEEC
Q 004636 700 LTKDNCMRVGMDGVILK 716 (740)
Q Consensus 700 ~~~~~~l~~Ga~~~i~K 716 (740)
+...++.+.|+|.++.-
T Consensus 177 env~~l~~~gad~iivg 193 (210)
T TIGR01163 177 DNARELAEAGADILVAG 193 (210)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 88888899999987653
No 218
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=66.40 E-value=5 Score=47.33 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChh----
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKE---GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP---- 528 (740)
Q Consensus 456 D~~~L~qVl~NLl~NAik~t~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~---- 528 (740)
|+.-|.+++.-+|+||+.-.-. ..|.|++. .+ -.|+|.|+|.|||-+..+
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~--~d---------------------gsitV~DnGrGIPv~~h~~~~~ 87 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLH--KD---------------------NSITVQDDGRGIPTGIHQDGNI 87 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEc--CC---------------------CeEEEEECCCcccCcccCcCCC
Confidence 4666777777888888764322 34555432 11 148999999999975332
Q ss_pred ----hhhhcccccccc----cCCCCCCcchhHHHHHHHHHH
Q 004636 529 ----NLFTKFAQNQAI----ALRNSSGSGLGLAICKRFVNL 561 (740)
Q Consensus 529 ----~iF~~F~~~~~~----~~~~~~GtGLGLaI~k~iv~~ 561 (740)
-+|.....+..- ..-..+-.|.|++.+.-+-+.
T Consensus 88 ~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 88 STVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred ccceeEEEEecccCcCCCCcccccCCcccccccccceeece
Confidence 223222221111 111123469999988777663
No 219
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=65.35 E-value=6.5 Score=49.94 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=31.0
Q ss_pred EEEEEecCCCCCcCChh--------hhhhcccccccccC----CCCCCcchhHHHHHHHHHHc
Q 004636 512 RVQVKDSGSGISPQDIP--------NLFTKFAQNQAIAL----RNSSGSGLGLAICKRFVNLM 562 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~--------~iF~~F~~~~~~~~----~~~~GtGLGLaI~k~iv~~~ 562 (740)
.|+|.|+|.|||-+..+ -||.....+..-.. -.++-.|.|.+.|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 48999999999986543 24444333322111 11234699999887776543
No 220
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=64.29 E-value=3.5 Score=48.26 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=30.5
Q ss_pred EEEEEecCCCCCcCChh-----------hhhhcccccccc---cCCCCCCcchhHHHHHHHHHHc
Q 004636 512 RVQVKDSGSGISPQDIP-----------NLFTKFAQNQAI---ALRNSSGSGLGLAICKRFVNLM 562 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~-----------~iF~~F~~~~~~---~~~~~~GtGLGLaI~k~iv~~~ 562 (740)
.|+|.|+|.|||-+..+ -+|.....+..- ..-..+-.|.|.+.|.-+-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 48999999999986542 123222222111 1112455799999887776654
No 221
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=64.05 E-value=1.5e+02 Score=30.66 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=68.9
Q ss_pred CchHHHHHHHHHHHhcCCeEEEe--CCHHHHHHHHCCCCeEEEEecCCCCCCH-----HHHHHHHHHhhccCCCCceEEE
Q 004636 620 ENGVSRSVTKGLLLHLGCDVMTV--SSVEECFRVVSHEHQVVFMDVCVPGIDG-----YEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 620 D~~~~~~~l~~~L~~~g~~v~~a--~~g~eal~~~~~~~dlvl~D~~mp~~dG-----~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
|+....+..+.+. +.||.|... +|..-|-++..-. --.+|=+.-|.-+| -..++.|++ .+..|||.
T Consensus 122 D~~etl~Aae~Lv-~eGF~VlPY~~~D~v~a~rLed~G-c~aVMPlgsPIGSg~Gl~n~~~l~~i~e-----~~~vpViv 194 (267)
T CHL00162 122 DPIGTLKAAEFLV-KKGFTVLPYINADPMLAKHLEDIG-CATVMPLGSPIGSGQGLQNLLNLQIIIE-----NAKIPVII 194 (267)
T ss_pred ChHHHHHHHHHHH-HCCCEEeecCCCCHHHHHHHHHcC-CeEEeeccCcccCCCCCCCHHHHHHHHH-----cCCCcEEE
Confidence 5555566655544 569999854 4444444444333 23566666675544 334455543 23466776
Q ss_pred EecCCCHHHHHHHHHcCCCeEE-----ECCCCHHHHHHHHHHHH
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVI-----LKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i-----~KP~~~~~L~~~l~~~l 731 (740)
=.+-...++..++++.|+|+.+ .|--++.++...++...
T Consensus 195 dAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV 238 (267)
T CHL00162 195 DAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238 (267)
T ss_pred eCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHH
Confidence 7888999999999999999975 47778888888877654
No 222
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=63.65 E-value=8 Score=44.78 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCChhhhhhcccccc
Q 004636 461 MQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (740)
Q Consensus 461 ~qVl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l~~iF~~F~~~~ 538 (740)
.-++..|++|++..... .|.|. .... +.=.|+|.|||.||++.+.+-+-.++++.+
T Consensus 22 ~sAVKELvENSiDAGAT-~I~I~--~kdy-------------------G~d~IEV~DNG~GI~~~n~~~l~lkh~TSK 77 (672)
T KOG1978|consen 22 VSAVKELVENSIDAGAT-AIDIK--VKDY-------------------GSDSIEVSDNGSGISATDFEGLALKHTTSK 77 (672)
T ss_pred HHHHHHHHhcCcccCCc-eeeEe--cCCC-------------------CcceEEEecCCCCCCccchhhhhhhhhhhc
Confidence 37888999999987432 23332 2211 123599999999999999888777766544
No 223
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=63.06 E-value=32 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=38.4
Q ss_pred cCCCchHHHHHHHHHHHHHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004636 46 SAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALML 105 (740)
Q Consensus 46 ~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~ta~~s~~ta~~l 105 (740)
.++.....+..++|.+.+..|..+++..+. .... ...|. ...++++++++.++.+
T Consensus 16 ~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~-~~~~-~~~~~---~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 16 NPDASLAALAIILGIWLIISGIFQLISAFR-RRKG-SKGWW---WSLLSGILSIVLGIIL 70 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc-chhhH---HHHHHHHHHHHHHHHH
Confidence 344567778899999999999999999998 3321 11222 2567777777777654
No 224
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=62.99 E-value=1.1e+02 Score=30.70 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=53.5
Q ss_pred HhcCCeEE-EeCCHHHHHHHHCCCCeEEEEe---cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHc
Q 004636 633 LHLGCDVM-TVSSVEECFRVVSHEHQVVFMD---VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRV 708 (740)
Q Consensus 633 ~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D---~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~ 708 (740)
...|..+. .+.+.+++.+.....+|.+..- ....+ .+++.++++++.. ....|+++..+-.+.++..+++++
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~-~~~~~~~~l~~~~---~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFE-VDLNTTERLAPLI---PKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccC-cCHHHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHc
Confidence 44687765 4577777766666677776543 11111 2357777775432 134578888888888999999999
Q ss_pred CCCeEEE
Q 004636 709 GMDGVIL 715 (740)
Q Consensus 709 Ga~~~i~ 715 (740)
|+++++.
T Consensus 194 Ga~gviv 200 (217)
T cd00331 194 GADAVLI 200 (217)
T ss_pred CCCEEEE
Confidence 9999874
No 225
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=61.81 E-value=56 Score=32.14 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=54.3
Q ss_pred hcCCeEE-EeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCe
Q 004636 634 HLGCDVM-TVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDG 712 (740)
Q Consensus 634 ~~g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~ 712 (740)
..|..+. -+.|.+|+.+..+..+|+|-++- ++.. |.+.++.+++. .+..|+++. +.-+.+...+++++|++.
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p-~~~~-g~~~~~~l~~~----~~~~p~~a~-GGI~~~n~~~~~~~G~~~ 167 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQALELGADIVKLFP-AEAV-GPAYIKALKGP----FPQVRFMPT-GGVSLDNAAEWLAAGVVA 167 (190)
T ss_pred HcCCcEECCcCCHHHHHHHHHCCCCEEEEcC-Cccc-CHHHHHHHHhh----CCCCeEEEe-CCCCHHHHHHHHHCCCEE
Confidence 3454443 56789999988888889988864 3444 89999888532 234678765 445788889999999988
Q ss_pred EEEC
Q 004636 713 VILK 716 (740)
Q Consensus 713 ~i~K 716 (740)
+-.-
T Consensus 168 v~v~ 171 (190)
T cd00452 168 VGGG 171 (190)
T ss_pred EEEc
Confidence 6554
No 226
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.57 E-value=1.2e+02 Score=32.78 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=62.6
Q ss_pred eEEeec----CchHHHHHHHHHHHhcC-CeEEE--eCCHHHHHHHHCCCCeEEEEecCCCC------------CC--HHH
Q 004636 614 KVLVMD----ENGVSRSVTKGLLLHLG-CDVMT--VSSVEECFRVVSHEHQVVFMDVCVPG------------ID--GYE 672 (740)
Q Consensus 614 ~ILIvd----D~~~~~~~l~~~L~~~g-~~v~~--a~~g~eal~~~~~~~dlvl~D~~mp~------------~d--G~e 672 (740)
.++.+| +.....+.++.+=+... ..+.. +.+.++|..+.....|.+.+... |+ .. ++.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~-~G~~~~t~~~~g~~~~~w~l~ 191 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIG-PGKVCITKIKTGFGTGGWQLA 191 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCC-CCcccccccccCCCCCccHHH
Confidence 567774 23334444544433433 33443 67889998888878888765421 11 12 465
Q ss_pred HHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 673 ~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+++.+++.. ..|||+-.+-....+..+|+..||+.+..
T Consensus 192 ai~~~~~~~-----~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 192 ALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 677775432 36699988899999999999999998765
No 227
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=61.07 E-value=86 Score=32.99 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=49.2
Q ss_pred EEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 639 VMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 639 v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
.+.+.+.+++.+.+...+|+|++| +|+.-+=.++.+.++ ...+.. ++..++.-+.+......+.|+|-+.
T Consensus 192 eVEv~tleea~ea~~~GaDiI~lD-n~~~e~l~~~v~~l~----~~~~~~-~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 192 TVEADTIEQALTVLQASPDILQLD-KFTPQQLHHLHERLK----FFDHIP-TLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred EEECCCHHHHHHHHHcCcCEEEEC-CCCHHHHHHHHHHHh----ccCCCE-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 346789999999998889999999 343333333333332 122333 5678999999999999999988754
No 228
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=61.05 E-value=1e+02 Score=30.44 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCeEEE-eC--CHHHHHHHHCCCCeEEEEecCCCCCCH-------HHHHHHHHHhhccCCCCceEEEEe
Q 004636 625 RSVTKGLLLHLGCDVMT-VS--SVEECFRVVSHEHQVVFMDVCVPGIDG-------YEVAVHIHDKFTRRHERPLIVALT 694 (740)
Q Consensus 625 ~~~l~~~L~~~g~~v~~-a~--~g~eal~~~~~~~dlvl~D~~mp~~dG-------~e~~~~Ir~~~~~~~~~~~II~lt 694 (740)
.+.++. ++..|..+.. +. +..+.++.+....|.++++-..|+.+| .+.++++|+......+..||+ +.
T Consensus 95 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~-v~ 172 (211)
T cd00429 95 HRTIQL-IKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIE-VD 172 (211)
T ss_pred HHHHHH-HHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEE-EE
Confidence 344443 3445655442 22 234444444334688777755565444 445555654433223335665 45
Q ss_pred cCCCHHHHHHHHHcCCCeEEE
Q 004636 695 GSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 695 ~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.-..+...++.+.|+|+++.
T Consensus 173 GGI~~env~~~~~~gad~iiv 193 (211)
T cd00429 173 GGINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 555668888999999999875
No 229
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=60.93 E-value=1.1e+02 Score=27.64 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCeEEEeC--CHHHHHHHH-C-CCCeEEEEecCCCCC-CHHHHHHHHHHhhccCCCCceEEEEecCC
Q 004636 623 VSRSVTKGLLLHLGCDVMTVS--SVEECFRVV-S-HEHQVVFMDVCVPGI-DGYEVAVHIHDKFTRRHERPLIVALTGST 697 (740)
Q Consensus 623 ~~~~~l~~~L~~~g~~v~~a~--~g~eal~~~-~-~~~dlvl~D~~mp~~-dG~e~~~~Ir~~~~~~~~~~~II~lt~~~ 697 (740)
.-...+..+|++.|+++.... ..++.++.+ . .+||+|.+...-+.. ...++++.+|+ ..+..+|++ -+..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~----~~p~~~iv~-GG~~ 77 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKE----VLPNVIVVV-GGPH 77 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHH----HCCCCEEEE-CCcc
Confidence 345667888888898876543 344555555 3 689999998754443 34556666654 345565653 4432
Q ss_pred CHHHHHH-HHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 698 DNLTKDN-CMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 698 ~~~~~~~-~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
-...... ....++| |+.+=--...+.+.++.+.++
T Consensus 78 ~t~~p~~~~~~~~~D-~vv~GEgE~~~~~l~~~l~~g 113 (127)
T cd02068 78 ATFFPEEILEEPGVD-FVVIGEGEETFLKLLEELEEG 113 (127)
T ss_pred hhhCHHHHhcCCCCC-EEEECCcHHHHHHHHHHHHcC
Confidence 2222233 2344555 555533334455555554443
No 230
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=60.49 E-value=0.74 Score=55.15 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.3
Q ss_pred EEEEEecCCCCCcCCh
Q 004636 512 RVQVKDSGSGISPQDI 527 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l 527 (740)
.|+|.|+|.|||-+..
T Consensus 162 sItV~DnGRGIPvd~h 177 (903)
T PTZ00109 162 SVEISDNGRGIPCDVS 177 (903)
T ss_pred eEEEEeCCcccccccc
Confidence 4899999999997543
No 231
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=60.42 E-value=74 Score=28.16 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=33.0
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCeEEECCC--CHHHHHHHHHHHHcc
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVILKPV--SLEKMRSVLSDLLEH 733 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~--~~~~L~~~l~~~l~~ 733 (740)
...+|+.......+....++++|.+=|+.||+ +.+++.+.++..-+.
T Consensus 64 D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 64 DAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp SEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 33334333345556677899999999999999 788888877665443
No 232
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=60.07 E-value=79 Score=32.25 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=60.3
Q ss_pred CchHHHHHHHHHHHhcCCeEEE--eCCHHHHHHHHCCCCeEEEEecCCCCCCH-----HHHHHHHHHhhccCCCCceEEE
Q 004636 620 ENGVSRSVTKGLLLHLGCDVMT--VSSVEECFRVVSHEHQVVFMDVCVPGIDG-----YEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 620 D~~~~~~~l~~~L~~~g~~v~~--a~~g~eal~~~~~~~dlvl~D~~mp~~dG-----~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
|+....+..+ .|-+.||.|.. .+|.--|-++..-... .+|=+.-|..+| -..++.|++.. ..|||+
T Consensus 108 D~~etl~Aae-~Lv~eGF~VlPY~~~D~v~akrL~d~Gca-avMPlgsPIGSg~Gi~n~~~l~~i~~~~-----~vPvIv 180 (247)
T PF05690_consen 108 DPIETLKAAE-ILVKEGFVVLPYCTDDPVLAKRLEDAGCA-AVMPLGSPIGSGRGIQNPYNLRIIIERA-----DVPVIV 180 (247)
T ss_dssp -HHHHHHHHH-HHHHTT-EEEEEE-S-HHHHHHHHHTT-S-EBEEBSSSTTT---SSTHHHHHHHHHHG-----SSSBEE
T ss_pred ChhHHHHHHH-HHHHCCCEEeecCCCCHHHHHHHHHCCCC-EEEecccccccCcCCCCHHHHHHHHHhc-----CCcEEE
Confidence 4444455444 45567999984 3555555555433322 566677776665 34566665432 356776
Q ss_pred EecCCCHHHHHHHHHcCCCeEEE-----CCCCHHHHHHHHHHH
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSDL 730 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~-----KP~~~~~L~~~l~~~ 730 (740)
=.+-..+++...+++.|+|+++. |--++-.+..+++..
T Consensus 181 DAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~A 223 (247)
T PF05690_consen 181 DAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLA 223 (247)
T ss_dssp ES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHH
Confidence 78889999999999999999986 445566666666544
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.87 E-value=1.3e+02 Score=33.65 Aligned_cols=108 Identities=10% Similarity=0.175 Sum_probs=57.7
Q ss_pred CceEEeecCchH---HHHHHHHHHHhcCCeEEEeCCHHHHHHHH---CC--CCeEEEEecCCCCCCHHHHHHHHHHhhcc
Q 004636 612 GLKVLVMDENGV---SRSVTKGLLLHLGCDVMTVSSVEECFRVV---SH--EHQVVFMDVCVPGIDGYEVAVHIHDKFTR 683 (740)
Q Consensus 612 ~~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~~---~~--~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~ 683 (740)
+.+|.+++-|+. ..+.++..-+..|+.+..+.+..+..+.+ .. .+|+||+|--=-...-.+.++++++....
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 346766665543 23344455456788888777766544433 32 58999999632111224445555554433
Q ss_pred CCCCceEEEEecCCCHHHHH---HHH-HcCCCeEEECCCC
Q 004636 684 RHERPLIVALTGSTDNLTKD---NCM-RVGMDGVILKPVS 719 (740)
Q Consensus 684 ~~~~~~II~lt~~~~~~~~~---~~l-~~Ga~~~i~KP~~ 719 (740)
..+.-.++++++.....+.. +.+ ..|.+++|.--+|
T Consensus 349 ~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~TKLD 388 (436)
T PRK11889 349 VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFD 388 (436)
T ss_pred cCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEEEccc
Confidence 33333355566654443322 222 3588887764444
No 234
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=58.29 E-value=63 Score=31.46 Aligned_cols=81 Identities=21% Similarity=0.122 Sum_probs=54.4
Q ss_pred HHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCC-------CHHHHHHHHHHhhccCCCCceEEEEecCCCHH
Q 004636 628 TKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGI-------DGYEVAVHIHDKFTRRHERPLIVALTGSTDNL 700 (740)
Q Consensus 628 l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~-------dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~ 700 (740)
.+..+....+--..+.|.+|+.++.....|.|++.-.-|-. -|++..+++++.. ..||+++.+- +.+
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~-----~~pv~AlGGI-~~~ 161 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS-----PIPVYALGGI-TPE 161 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-----SSCEEEESS---TT
T ss_pred hhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC-----CCCEEEEcCC-CHH
Confidence 34555543444457899999777777788999998765433 3888888876432 2679988776 455
Q ss_pred HHHHHHHcCCCeEE
Q 004636 701 TKDNCMRVGMDGVI 714 (740)
Q Consensus 701 ~~~~~l~~Ga~~~i 714 (740)
....+.+.|++++-
T Consensus 162 ~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 162 NIPELREAGADGVA 175 (180)
T ss_dssp THHHHHHTT-SEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 67788999999864
No 235
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=57.90 E-value=56 Score=34.25 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred EEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 639 VMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 639 v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.+.+.|.+|+.+.+...+|.|.+|-.-| +-++++.+..+.. +..||. .++.-+.+......++|+|.+-.
T Consensus 185 ~vev~t~eea~~A~~~gaD~I~ld~~~~-----e~l~~~v~~i~~~-~~i~i~-asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 185 EVEVETLEEAEEALEAGADIIMLDNMSP-----EELKEAVKLLKGL-PRVLLE-ASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred EEecCCHHHHHHHHHcCCCEEEECCCCH-----HHHHHHHHHhccC-CCeEEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 3467899999998887899999987544 3344433332222 345555 57777888888999999998743
No 236
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=57.71 E-value=76 Score=28.84 Aligned_cols=63 Identities=22% Similarity=0.127 Sum_probs=45.2
Q ss_pred HHHHHhhHhHHHHhHhhhcCCCchHHHHHHHHHHHHHhhHHHHHHHHhcccchhHHHHHHHHHHHH
Q 004636 28 IALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVL 93 (740)
Q Consensus 28 i~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~ 93 (740)
++-.|+++-+.++|...+-+. .+..+...++|+...|...+++.+.-..|. +.+|...++-++
T Consensus 50 ~~G~~~g~Gl~~l~~~~~~~~--~~~al~~l~~~~~~~~lgRlis~~~dG~p~-~~~~~~l~~Elv 112 (124)
T PF14248_consen 50 YGGLYLGLGLLLLWAAFKPEY--RRPALRLLALFIGGGGLGRLISLALDGPPS-PFLWVALIFELV 112 (124)
T ss_pred HHHHHHHHHHHHHHHHccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 677888888888887776443 445777788899999999999999987765 333333333333
No 237
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.61 E-value=1.2e+02 Score=31.87 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=49.0
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.+++.+|+.+++...+|+|.+|= |+ .+.++++-+......+.+ ++..++.-+.+...++.+.|+|.+.+
T Consensus 187 VEv~tleea~~A~~~GaDiI~LDn----~~-~e~l~~~v~~~~~~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 187 IECESLEEAKNAMNAGADIVMCDN----MS-VEEIKEVVAYRNANYPHV-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred EEeCCHHHHHHHHHcCCCEEEECC----CC-HHHHHHHHHHhhccCCCe-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 368899999999988899999874 33 344444433322223444 45568888999999999999997653
No 238
>PRK14974 cell division protein FtsY; Provisional
Probab=57.59 E-value=1.3e+02 Score=32.66 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred ceEEeecCc---hHHHHHHHHHHHhcCCeEEEeCCHH-------HHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhh
Q 004636 613 LKVLVMDEN---GVSRSVTKGLLLHLGCDVMTVSSVE-------ECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKF 681 (740)
Q Consensus 613 ~~ILIvdD~---~~~~~~l~~~L~~~g~~v~~a~~g~-------eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~ 681 (740)
.+|++++-| ....+.++...+..|..+.....+. ++++.. ...+|+||+|-.=-.-.-.++..++++..
T Consensus 169 ~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~ 248 (336)
T PRK14974 169 FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIV 248 (336)
T ss_pred CeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHH
Confidence 356666554 2333445555566677665443321 333333 34679999996311111244555554433
Q ss_pred ccCCCCceEEEEecCCCHHHHH--HHH--HcCCCeEEECCCC
Q 004636 682 TRRHERPLIVALTGSTDNLTKD--NCM--RVGMDGVILKPVS 719 (740)
Q Consensus 682 ~~~~~~~~II~lt~~~~~~~~~--~~l--~~Ga~~~i~KP~~ 719 (740)
+...+...++++.+....+... +.+ ..|.+++|.--+|
T Consensus 249 ~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 249 RVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred HhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeec
Confidence 3233444455555544433332 222 2588887654444
No 239
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=57.39 E-value=43 Score=32.49 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=47.5
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.+.|.+|+.+++...+|.|.+|=.-| +-++++.+..+...+.+ .|..++.-+.+...+..+.|+|.+-.
T Consensus 85 VEv~~~ee~~ea~~~g~d~I~lD~~~~-----~~~~~~v~~l~~~~~~v-~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 85 VEVENLEEAEEALEAGADIIMLDNMSP-----EDLKEAVEELRELNPRV-KIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEES-CH-----HHHHHHHHHHHHHTTTS-EEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred EEcCCHHHHHHHHHhCCCEEEecCcCH-----HHHHHHHHHHhhcCCcE-EEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 478899999999988899999996544 33333333222233444 56688988889999999999987643
No 240
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=56.70 E-value=1.1e+02 Score=32.71 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=66.1
Q ss_pred ecCchHHHHHHHHHHHhcCCeE--EEeCCHHHHHHHHCCCCeEEEEecCCCCCC-----HHHHHHHHHHhhccCCCCceE
Q 004636 618 MDENGVSRSVTKGLLLHLGCDV--MTVSSVEECFRVVSHEHQVVFMDVCVPGID-----GYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 618 vdD~~~~~~~l~~~L~~~g~~v--~~a~~g~eal~~~~~~~dlvl~D~~mp~~d-----G~e~~~~Ir~~~~~~~~~~~I 690 (740)
..|.....+..+.+. +.|+.| .+++|...|-++..-.+ ..+|=+.-|.-+ --+.++.+++. +..||
T Consensus 180 lpd~~~~v~aa~~L~-~~Gf~v~~yc~~d~~~a~~l~~~g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~-----~~vpV 252 (326)
T PRK11840 180 YPDMVETLKATEILV-KEGFQVMVYCSDDPIAAKRLEDAGA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG-----ATVPV 252 (326)
T ss_pred ccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHhcCC-EEEeeccccccCCCCCCCHHHHHHHHHc-----CCCcE
Confidence 344444445544444 359998 36677777777665444 334332222222 24555555432 34667
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEE-----CCCCHHHHHHHHHHHH
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSDLL 731 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~-----KP~~~~~L~~~l~~~l 731 (740)
|.=.+-...++..++++.|+|+.+. |--++-.+.++++...
T Consensus 253 ivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av 298 (326)
T PRK11840 253 LVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAV 298 (326)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHH
Confidence 7667889999999999999999864 5567777777766543
No 241
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=56.26 E-value=2.5e+02 Score=29.44 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=47.6
Q ss_pred HHHHHHhhHhHHHHhHhhhcCCCchHHHHHHHHHHHHHhh-----------HHHHHHHHhcccch-hHHHHHHHHHHHHH
Q 004636 27 FIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCG-----------ATHLINLWTFNMHS-RTVAIVMTTAKVLT 94 (740)
Q Consensus 27 ~i~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg-----------~~h~~~~~~~~~~~-~~~~~~~~~~k~~t 94 (740)
++++..|++-..+++++.-.+ .+|--++.+++.+..++| .+=++-++|+-.|. .+..|.....=++.
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~-~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~G 81 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYP-WLLILVLALLTFFFGMLGVYGPRAATIGFATLLVAVYTMAGPSPGPEALEHALLFLAG 81 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 455556656556666554332 333333333333222222 13345566764444 34455666667788
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004636 95 AVVSCATALMLVHIIPD 111 (740)
Q Consensus 95 a~~s~~ta~~l~~~~p~ 111 (740)
++...+.++..|++-|.
T Consensus 82 glwy~~lsl~~~~l~p~ 98 (284)
T PF12805_consen 82 GLWYLLLSLLWWPLRPY 98 (284)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 88888888999999875
No 242
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=55.78 E-value=1e+02 Score=29.84 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=48.7
Q ss_pred CCeEE-EeCCHHHHHHHHCCCCeEEEEecCCCC--------CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHH
Q 004636 636 GCDVM-TVSSVEECFRVVSHEHQVVFMDVCVPG--------IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCM 706 (740)
Q Consensus 636 g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~--------~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l 706 (740)
+..+- .+.+..++.+.....+|.|+++..-|. ..|.+.++++++. ...||++..+- +.+...++.
T Consensus 95 ~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pv~a~GGi-~~~~i~~~~ 168 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-----VEIPVVAIGGI-TPENAAEVL 168 (196)
T ss_pred CCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEEECCC-CHHHHHHHH
Confidence 44333 345667777766667899988644332 3457788777542 23567766554 567888999
Q ss_pred HcCCCeEEE
Q 004636 707 RVGMDGVIL 715 (740)
Q Consensus 707 ~~Ga~~~i~ 715 (740)
++|++++..
T Consensus 169 ~~Ga~~i~~ 177 (196)
T cd00564 169 AAGADGVAV 177 (196)
T ss_pred HcCCCEEEE
Confidence 999998754
No 243
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.46 E-value=1.4e+02 Score=33.47 Aligned_cols=106 Identities=8% Similarity=0.139 Sum_probs=56.9
Q ss_pred ceEEeecCch---HHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC-CCCeEEEEecC-CCCCCHHHHHHHHHHhhccC---
Q 004636 613 LKVLVMDENG---VSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVC-VPGIDGYEVAVHIHDKFTRR--- 684 (740)
Q Consensus 613 ~~ILIvdD~~---~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlvl~D~~-mp~~dG~e~~~~Ir~~~~~~--- 684 (740)
.+|.+++-|. .....++...+..|..+..+.+..++.+.+. ..+|+||+|-. .+..|. +.+.++++.....
T Consensus 253 ~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~ 331 (432)
T PRK12724 253 KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEK 331 (432)
T ss_pred CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCC
Confidence 3566666554 1123344444555766666655666666553 57899999951 111222 3334443322211
Q ss_pred CCCceEEEEecCCCHHHHHHHHH----cCCCeEEECCCC
Q 004636 685 HERPLIVALTGSTDNLTKDNCMR----VGMDGVILKPVS 719 (740)
Q Consensus 685 ~~~~~II~lt~~~~~~~~~~~l~----~Ga~~~i~KP~~ 719 (740)
.+.-.++++++....++.....+ .|.++.|.--+|
T Consensus 332 ~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLD 370 (432)
T PRK12724 332 DSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLD 370 (432)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEccc
Confidence 22234677788777765555544 577876654343
No 244
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.33 E-value=80 Score=33.45 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=48.6
Q ss_pred eEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 638 DVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 638 ~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
-.+.++|.+|+.+++....|+|.+| +| +--++-+.+ +..+...++. .+..++.-+.+......+.|+|.+-
T Consensus 202 IeVEv~tl~ea~eal~~gaDiI~LD-nm---~~e~vk~av-~~~~~~~~~v-~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEGAELVLLD-NF---PVWQTQEAV-QRRDARAPTV-LLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEEcCCHHHHHHHHHcCCCEEEeC-CC---CHHHHHHHH-HHHhccCCCE-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3457899999999998889999999 34 322222222 2222223333 5667888899999999999998754
No 245
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=55.10 E-value=92 Score=28.02 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q 004636 92 VLTAVVSCATALMLVHIIPDLLS 114 (740)
Q Consensus 92 ~~ta~~s~~ta~~l~~~~p~~~~ 114 (740)
++++.+.++.+..++...-+.++
T Consensus 76 liv~~~~l~la~i~~~~~~~~l~ 98 (121)
T PF07332_consen 76 LIVAGLYLLLALILLLIGRRRLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556555555554444443
No 246
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.04 E-value=1e+02 Score=32.46 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=60.7
Q ss_pred eEEeecCchHHHHHHHHHHHh---cC--C-eEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCC--
Q 004636 614 KVLVMDENGVSRSVTKGLLLH---LG--C-DVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRH-- 685 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~---~g--~-~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~-- 685 (740)
.|||-|++-... .+...++. .. . -.+.+++.+|+.+.+...+|+|.+|=..|+ .++++.+......
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~~~e-----~l~~~v~~l~~~~~~ 229 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNMTPE-----EIREVIEALKREGLR 229 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCCCHH-----HHHHHHHHHHhcCcC
Confidence 378877775443 34444432 22 2 234789999999999888999999964432 3333323222222
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 686 ERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 686 ~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.+ .+..++.-+.+...+..+.|+|.+.+
T Consensus 230 ~~~-~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 230 ERV-KIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CCE-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 333 55678888889999999999997543
No 247
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.72 E-value=88 Score=27.52 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=55.2
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCH-HHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSV-EECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g-~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
.+|.++|.|+...+ .+...|+.+...+-. .+.++... .+.+.+++...-. ..-+.++..+|+. .+..+|
T Consensus 22 ~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d-~~n~~~~~~~r~~----~~~~~i 92 (116)
T PF02254_consen 22 IDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD-EENLLIALLAREL----NPDIRI 92 (116)
T ss_dssp SEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH-HHHHHHHHHHHHH----TTTSEE
T ss_pred CEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhcCccccCEEEEccCCH-HHHHHHHHHHHHH----CCCCeE
Confidence 47899999987754 334567777654332 34455443 4667777766432 3345666666543 345667
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 691 I~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
++... +.+......++|+|..+.
T Consensus 93 i~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 93 IARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEES--SHHHHHHHHHTT-SEEEE
T ss_pred EEEEC--CHHHHHHHHHCCcCEEEC
Confidence 75543 455566677899998764
No 248
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=53.77 E-value=97 Score=30.38 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=48.8
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCC--------CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCC
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPG--------IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMD 711 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~--------~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~ 711 (740)
..+.+.+++.+......|+|.++-..|. ..|++.++.+.+.. +..||+++.+- +.+...++++.|++
T Consensus 101 ~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~----~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 101 VSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS----IDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred EeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 3567788877766668899988755441 23788888775422 23567766554 57778888999999
Q ss_pred eEEE
Q 004636 712 GVIL 715 (740)
Q Consensus 712 ~~i~ 715 (740)
++..
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8653
No 249
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=53.26 E-value=1.9e+02 Score=30.41 Aligned_cols=94 Identities=10% Similarity=0.191 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCeEEEeCCHHH---HHHHHC--CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHH
Q 004636 626 SVTKGLLLHLGCDVMTVSSVEE---CFRVVS--HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNL 700 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~~a~~g~e---al~~~~--~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~ 700 (740)
..++...+..|+.+..+.+..+ +++.+. ..+|+||+|--=-.-..-+.++++++......+.-.++++++.....
T Consensus 120 ~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 120 QQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred HHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 3444555567888877766543 333333 36899999973221112344555544333233333455666654443
Q ss_pred HHHHH----HHcCCCeEEECCCC
Q 004636 701 TKDNC----MRVGMDGVILKPVS 719 (740)
Q Consensus 701 ~~~~~----l~~Ga~~~i~KP~~ 719 (740)
+.... -..+.+++|.--+|
T Consensus 200 d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 200 DMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred HHHHHHHHhCCCCCCEEEEEeec
Confidence 33222 23577776654343
No 250
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=52.95 E-value=60 Score=30.42 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=45.9
Q ss_pred CCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeC----CHHHHHHHHCCCCeEEEEecCCCC
Q 004636 609 NFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVS----SVEECFRVVSHEHQVVFMDVCVPG 667 (740)
Q Consensus 609 ~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~----~g~eal~~~~~~~dlvl~D~~mp~ 667 (740)
++.|.+|.|+.......+-+..+|.+.|+.|..+. |.+++. ...|+|+.-..-|.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v----~~ADIVvsAtg~~~ 83 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV----HDADVVVVGSPKPE 83 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH----hhCCEEEEecCCCC
Confidence 46788999999999999999999999999999887 444433 35799999887774
No 251
>PRK12704 phosphodiesterase; Provisional
Probab=52.65 E-value=14 Score=42.60 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=36.9
Q ss_pred EEEEecCCCHH--HHHHHHHcCCCeEEECCCCHHHHHHHHHHHHc
Q 004636 690 IVALTGSTDNL--TKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 690 II~lt~~~~~~--~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~ 732 (740)
+|++|+.+... ....+++.|+.|+..||++.+++...+++-++
T Consensus 252 ~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 252 AVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred eEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 66688877766 78899999999999999999999999887654
No 252
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=52.01 E-value=2.1e+02 Score=28.88 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=51.9
Q ss_pred HHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEecCCCC-------CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHH
Q 004636 631 LLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMDVCVPG-------IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTK 702 (740)
Q Consensus 631 ~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~-------~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~ 702 (740)
.+++.+..+. .+.+.+++..+.....|.|+.+-.-++ ...+++++++++.. ..||++.-+-...++.
T Consensus 97 ~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-----~~Pvi~~GGI~~~~~v 171 (236)
T cd04730 97 RLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-----DIPVIAAGGIADGRGI 171 (236)
T ss_pred HHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-----CCCEEEECCCCCHHHH
Confidence 3444565554 345666665555556788877542111 24577888876432 2467776676666888
Q ss_pred HHHHHcCCCeEEEC
Q 004636 703 DNCMRVGMDGVILK 716 (740)
Q Consensus 703 ~~~l~~Ga~~~i~K 716 (740)
.++++.|+|+++.-
T Consensus 172 ~~~l~~GadgV~vg 185 (236)
T cd04730 172 AAALALGADGVQMG 185 (236)
T ss_pred HHHHHcCCcEEEEc
Confidence 89999999988764
No 253
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.85 E-value=1.1e+02 Score=32.31 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=57.8
Q ss_pred eEEeecCchHH--------HHHHHHHHHhcCC--e-EEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhc
Q 004636 614 KVLVMDENGVS--------RSVTKGLLLHLGC--D-VMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFT 682 (740)
Q Consensus 614 ~ILIvdD~~~~--------~~~l~~~L~~~g~--~-v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~ 682 (740)
.|||=|.+-.. .+.+.+.=++.++ . .+.+.|.+|+.+.+...+|+|.+|=.-| .+=-++...+ +
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~s~-e~l~~av~~~----~ 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNFSL-DDLREGVELV----D 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCCCH-HHHHHHHHHh----C
Confidence 46766666442 2333333333443 2 3578999999999988899999994332 2222222222 1
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 683 RRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 683 ~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
... ++-.++.-+.+...+..+.|+|-..
T Consensus 236 ---~~~-~leaSGgI~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 236 ---GRA-IVEASGNVNLNTVGAIASTGVDVIS 263 (281)
T ss_pred ---CCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 122 5667899999999999999998543
No 254
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=51.74 E-value=85 Score=32.94 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=70.1
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEe------CCHHHHHHHHCC----CCeEEEEe-------cCCCCCCHHHHHH
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTV------SSVEECFRVVSH----EHQVVFMD-------VCVPGIDGYEVAV 675 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a------~~g~eal~~~~~----~~dlvl~D-------~~mp~~dG~e~~~ 675 (740)
.+++++-|-...-+.++.. ..|+..+.. .+..||+..++. ...+.-|+ ..-..-.|+++++
T Consensus 113 f~vpfmad~~~l~EAlrai--~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLk 190 (287)
T TIGR00343 113 FKVPFVCGARDLGEALRRI--NEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLL 190 (287)
T ss_pred cCCCEEccCCCHHHHHHHH--HCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHH
Confidence 3678888887777777664 357766532 244566665431 11221111 0000125789998
Q ss_pred HHHHhhccCCCCceEE--EEecCCCHHHHHHHHHcCCCeEE-----ECCCCHHHHHHHHHHHHc
Q 004636 676 HIHDKFTRRHERPLIV--ALTGSTDNLTKDNCMRVGMDGVI-----LKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 676 ~Ir~~~~~~~~~~~II--~lt~~~~~~~~~~~l~~Ga~~~i-----~KP~~~~~L~~~l~~~l~ 732 (740)
++++.. ..||| +..+-..+++...+++.|++++. .|.-++++....+.+.+.
T Consensus 191 ei~~~~-----~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 191 EVLKLG-----KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred HHHHhC-----CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 886531 24566 77777799999999999999985 455577777666666553
No 255
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.73 E-value=75 Score=33.66 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=46.9
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
+.+.|.+|+.+++...+|+|.+|- |. .+-++++-+..+...+..++. .++.-+.+...+..+.|+|.+.
T Consensus 201 VEv~tleea~eA~~~GaD~I~LDn-~~----~e~l~~av~~~~~~~~~i~le-AsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 201 VETETLEQVQEALEYGADIIMLDN-MP----VDLMQQAVQLIRQQNPRVKIE-ASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred EECCCHHHHHHHHHcCCCEEEECC-CC----HHHHHHHHHHHHhcCCCeEEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 367899999999988899999993 32 233333322222223445554 5777788888899999999764
No 256
>PLN03128 DNA topoisomerase 2; Provisional
Probab=51.48 E-value=22 Score=44.76 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=28.9
Q ss_pred EEEEEecCCCCCcCChh--------hhhhcccccccccC----CCCCCcchhHHHHHHHHHH
Q 004636 512 RVQVKDSGSGISPQDIP--------NLFTKFAQNQAIAL----RNSSGSGLGLAICKRFVNL 561 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~--------~iF~~F~~~~~~~~----~~~~GtGLGLaI~k~iv~~ 561 (740)
.|+|.|+|.|||-+..+ -||.....+..-.. -.++-.|.|.+.|.-+-+.
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~ 148 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE 148 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCe
Confidence 48999999999976432 23433333222111 1123368898877766543
No 257
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=50.96 E-value=1.6e+02 Score=34.43 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=65.3
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCC-HHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSS-VEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
+..+.++|.|+...+.+ ++.|+.+...+- -.+.++... ++.|.++....=++.| ..++..+|+. ++..+
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~-~~iv~~~~~~----~~~~~ 510 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA-GEIVASAREK----RPDIE 510 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHH-HHHHHHHHHH----CCCCe
Confidence 45689999888754433 346888776542 245555553 4678777654221111 2344445432 35566
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
||+-+. +++......++|+|..+. ..+++.+.+.+.+.+..
T Consensus 511 iiar~~--~~~~~~~l~~~Gad~vv~---p~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 511 IIARAH--YDDEVAYITERGANQVVM---GEREIARTMLELLETPP 551 (558)
T ss_pred EEEEEC--CHHHHHHHHHcCCCEEEC---hHHHHHHHHHHHhcCCC
Confidence 876554 445556677899997773 34666677777776653
No 258
>PRK00811 spermidine synthase; Provisional
Probab=50.61 E-value=88 Score=33.00 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=46.3
Q ss_pred eEEeecCchHHHHHHHHHHHhcC------CeE-EEeCCHHHHHHHHCCCCeEEEEecCCCCCC-----HHHHHHHHHHhh
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLG------CDV-MTVSSVEECFRVVSHEHQVVFMDVCVPGID-----GYEVAVHIHDKF 681 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g------~~v-~~a~~g~eal~~~~~~~dlvl~D~~mp~~d-----G~e~~~~Ir~~~ 681 (740)
+|..||=|+.+.+..++.+...+ -++ ....|+.+.+......+|+|++|..-|..- .-++.+.+++..
T Consensus 102 ~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L 181 (283)
T PRK00811 102 KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRAL 181 (283)
T ss_pred EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhc
Confidence 79999999999999998886432 123 356777766654346799999998655322 245566665544
No 259
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.43 E-value=1.5e+02 Score=29.96 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHhcCC-eEEEeCCHHHHHHHHCC--CCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHH
Q 004636 630 GLLLHLGC-DVMTVSSVEECFRVVSH--EHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCM 706 (740)
Q Consensus 630 ~~L~~~g~-~v~~a~~g~eal~~~~~--~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l 706 (740)
..|.+.+. -|....+.++++..... .-.+=++.+.|-.-++++.++++++.+. ..+. .+|-...-.+.++..++.
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~-~~p~-~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYK-DDPE-VLIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcC-CCCC-eEEeeeeCCCHHHHHHHH
Confidence 44555453 34466777777765531 2233344555666678999988876431 1112 355555567788888999
Q ss_pred HcCCCeEEECCCCHHHHHHHH
Q 004636 707 RVGMDGVILKPVSLEKMRSVL 727 (740)
Q Consensus 707 ~~Ga~~~i~KP~~~~~L~~~l 727 (740)
++|++ |+.-|.--.++.+.-
T Consensus 86 ~aGA~-FivsP~~~~~v~~~~ 105 (213)
T PRK06552 86 LAGAQ-FIVSPSFNRETAKIC 105 (213)
T ss_pred HcCCC-EEECCCCCHHHHHHH
Confidence 99998 555676666655543
No 260
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=49.76 E-value=69 Score=33.56 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHhhccCCCCceEE--EEecCCCHHHHHHHHHcCCCeEEE-----CCCCHHHHHHHHHHHHc
Q 004636 669 DGYEVAVHIHDKFTRRHERPLIV--ALTGSTDNLTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 669 dG~e~~~~Ir~~~~~~~~~~~II--~lt~~~~~~~~~~~l~~Ga~~~i~-----KP~~~~~L~~~l~~~l~ 732 (740)
.|+++++++++.. . .||| +..+-..+++..++++.|++++.. +.-++.+....+.+.+.
T Consensus 181 ~d~elLk~l~~~~----~-iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 181 APYELVKETAKLG----R-LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCHHHHHHHHHhc----C-CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 5788888886432 2 4454 777777999999999999999764 44466666666665543
No 261
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=49.49 E-value=2.1e+02 Score=29.97 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=59.1
Q ss_pred EEeecCchHHHHHHHHHHH----hcCCeE---EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCC
Q 004636 615 VLVMDENGVSRSVTKGLLL----HLGCDV---MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHER 687 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~----~~g~~v---~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~ 687 (740)
|||=|.+-...-.+...++ ..++.. +.++|.+|+.+++...+|+|++|-+-| -++-+.+ +... ...
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~~----e~~~~av-~~l~-~~~- 233 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMSP----EELKEAV-KLLG-LAG- 233 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCCH----HHHHHHH-HHhc-cCC-
Confidence 5655555544333444443 346543 368999999999999999999995433 2332222 2211 222
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCeE
Q 004636 688 PLIVALTGSTDNLTKDNCMRVGMDGV 713 (740)
Q Consensus 688 ~~II~lt~~~~~~~~~~~l~~Ga~~~ 713 (740)
..++-.|+.-+.+......+.|+|-+
T Consensus 234 ~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 234 RALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred ceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 34677899999999988889999854
No 262
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.81 E-value=1.7e+02 Score=29.56 Aligned_cols=91 Identities=10% Similarity=0.111 Sum_probs=54.9
Q ss_pred HHHHhcCC-eEEEeCCHHHHHHHHC----CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHH
Q 004636 630 GLLLHLGC-DVMTVSSVEECFRVVS----HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDN 704 (740)
Q Consensus 630 ~~L~~~g~-~v~~a~~g~eal~~~~----~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~ 704 (740)
..|.+.+. -|....+.+++++... ...++|=+- +-.-++++.++++|+.+ +.. +|..-.-.+.+....
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit--l~~~~~~~~I~~l~~~~----p~~-~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVT--LRTPAALEAIRLIAKEV----PEA-LIGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe--cCCccHHHHHHHHHHHC----CCC-EEEEeeccCHHHHHH
Confidence 34454453 3456677888887553 345544333 44447999998887543 333 344444566678889
Q ss_pred HHHcCCCeEEECCCCHHHHHHHHH
Q 004636 705 CMRVGMDGVILKPVSLEKMRSVLS 728 (740)
Q Consensus 705 ~l~~Ga~~~i~KP~~~~~L~~~l~ 728 (740)
+.++||+ |+.-|..-.++.+.-+
T Consensus 83 a~~aGA~-FivsP~~~~~vi~~a~ 105 (212)
T PRK05718 83 AIEAGAQ-FIVSPGLTPPLLKAAQ 105 (212)
T ss_pred HHHcCCC-EEECCCCCHHHHHHHH
Confidence 9999998 5555654445555433
No 263
>PRK04457 spermidine synthase; Provisional
Probab=48.51 E-value=2e+02 Score=29.97 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=47.8
Q ss_pred CceEEeecCchHHHHHHHHHHHhcC--CeEE-EeCCHHHHHHHHCCCCeEEEEecCCC-C----CCHHHHHHHHHHhhc
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLG--CDVM-TVSSVEECFRVVSHEHQVVFMDVCVP-G----IDGYEVAVHIHDKFT 682 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g--~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp-~----~dG~e~~~~Ir~~~~ 682 (740)
+.+|..||=|+.+.+..++.+...+ -++. ...|+.+.+......+|+|++|..-+ . ..-.++.+.+++..+
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~ 168 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALS 168 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcC
Confidence 3579999999999998888775322 2333 45788777765556799999996321 1 123577777766543
No 264
>PRK01362 putative translaldolase; Provisional
Probab=48.03 E-value=1.1e+02 Score=30.81 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=57.5
Q ss_pred HHHHhcCCeE--EEeCCHHHHHHHHCCCCeEE--EEe-cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHH
Q 004636 630 GLLLHLGCDV--MTVSSVEECFRVVSHEHQVV--FMD-VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDN 704 (740)
Q Consensus 630 ~~L~~~g~~v--~~a~~g~eal~~~~~~~dlv--l~D-~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~ 704 (740)
+.|++.|..+ +.+-+..+|+.......+.| ++. +.=.+.||+++++++++..+..+..+.|+ ..+.-+.....+
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkil-aAS~r~~~~v~~ 173 (214)
T PRK01362 95 KALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEII-AASVRHPMHVLE 173 (214)
T ss_pred HHHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEE-EeecCCHHHHHH
Confidence 3466678655 46788889888775544432 111 11236799999999988776555455565 455567777888
Q ss_pred HHHcCCCeEEECC
Q 004636 705 CMRVGMDGVILKP 717 (740)
Q Consensus 705 ~l~~Ga~~~i~KP 717 (740)
+..+|+| +++=|
T Consensus 174 ~~~~G~d-~iTi~ 185 (214)
T PRK01362 174 AALAGAD-IATIP 185 (214)
T ss_pred HHHcCCC-EEecC
Confidence 8999999 55544
No 265
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.66 E-value=1.1e+02 Score=35.24 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=58.2
Q ss_pred CceEEeecCchHH----HHHHHHHHHhcC--CeEEE--eCCHHHHHHHHCCCCeEEEE--------------ecCCCCCC
Q 004636 612 GLKVLVMDENGVS----RSVTKGLLLHLG--CDVMT--VSSVEECFRVVSHEHQVVFM--------------DVCVPGID 669 (740)
Q Consensus 612 ~~~ILIvdD~~~~----~~~l~~~L~~~g--~~v~~--a~~g~eal~~~~~~~dlvl~--------------D~~mp~~d 669 (740)
|..+++||-.+.. .+.++.+=+..+ ..+.. +.+.+.|.+++....|.|.+ |...|..+
T Consensus 254 Gvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ 333 (502)
T PRK07107 254 GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQAT 333 (502)
T ss_pred CCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHH
Confidence 3455666533333 344444333333 33333 55666777766666676654 33334333
Q ss_pred HHHHHHH-HHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 670 GYEVAVH-IHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 670 G~e~~~~-Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.+--+.+ .++..+......|||+=.+-....+..+|+.+|||..+.
T Consensus 334 ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 334 ALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred HHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 3222222 222222223346799888888899999999999998764
No 266
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=47.53 E-value=84 Score=33.20 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=48.5
Q ss_pred EEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 639 VMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 639 v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
.+.+.+.+++.+++...+|+|++| +|+..+=-++.+.++ ...+.+ ++..++.-+.+......+.|+|-+.
T Consensus 193 eVEv~tleqa~ea~~agaDiI~LD-n~~~e~l~~av~~~~----~~~~~~-~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 193 VVEADTPKEAIAALRAQPDVLQLD-KFSPQQATEIAQIAP----SLAPHC-TLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEECCCHHHHHHHHHcCCCEEEEC-CCCHHHHHHHHHHhh----ccCCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 446789999999998889999999 443322223332221 122333 5678899999999899999988754
No 267
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.30 E-value=2.4e+02 Score=31.34 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCeEEEeCCHHHHHHHH---C--CCCeEEEEecCCCCC--CHHHHHHHHHHhhccCCCCceEEEEecCCCH
Q 004636 627 VTKGLLLHLGCDVMTVSSVEECFRVV---S--HEHQVVFMDVCVPGI--DGYEVAVHIHDKFTRRHERPLIVALTGSTDN 699 (740)
Q Consensus 627 ~l~~~L~~~g~~v~~a~~g~eal~~~---~--~~~dlvl~D~~mp~~--dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~ 699 (740)
.++..-+..|+.+..+.+..+..+.+ . ..+|+||+|-- +. ..-+.+..+++......+...++++++....
T Consensus 252 QLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA--Gr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 252 QFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV--GRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred HHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC--CCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 44444445566555566655543332 2 34677888752 22 1123334443322222233223444544444
Q ss_pred HHHHHHH----HcCCCeEEECCC
Q 004636 700 LTKDNCM----RVGMDGVILKPV 718 (740)
Q Consensus 700 ~~~~~~l----~~Ga~~~i~KP~ 718 (740)
.+....+ ..|.+++|.--+
T Consensus 330 ~d~~~i~~~f~~l~i~glI~TKL 352 (407)
T PRK12726 330 ADVMTILPKLAEIPIDGFIITKM 352 (407)
T ss_pred HHHHHHHHhcCcCCCCEEEEEcc
Confidence 4444332 245666554333
No 268
>PRK05637 anthranilate synthase component II; Provisional
Probab=47.25 E-value=59 Score=32.63 Aligned_cols=48 Identities=6% Similarity=0.101 Sum_probs=35.6
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEE
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFM 661 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~ 661 (740)
+||++|-...+..-+.+.|++.|+.+.+..+....-+.....||.||+
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIl 50 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICL 50 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEE
Confidence 799999988888889999999999988876643322222446776666
No 269
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=47.05 E-value=2.4e+02 Score=32.50 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=64.2
Q ss_pred CceEEeecCchH----HHHHHHHHHHhc-CCeEE--EeCCHHHHHHHHCCCCeEEEEec--------------CCCCCCH
Q 004636 612 GLKVLVMDENGV----SRSVTKGLLLHL-GCDVM--TVSSVEECFRVVSHEHQVVFMDV--------------CVPGIDG 670 (740)
Q Consensus 612 ~~~ILIvdD~~~----~~~~l~~~L~~~-g~~v~--~a~~g~eal~~~~~~~dlvl~D~--------------~mp~~dG 670 (740)
|..++++|-..- ..+.++.+=+.+ +..++ -+.+.++|..+.....|.|.+.+ ..|...-
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~ 339 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATA 339 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccH
Confidence 455777764332 123343332333 35554 37889999998888889887643 1233344
Q ss_pred HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 671 YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 671 ~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+..+.++.+. ...|||+=.+-....+..+|+.+||+.++.
T Consensus 340 i~~~~~~~~~-----~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 340 VYKVASIAAQ-----HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5555555332 236799889999999999999999998764
No 270
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.10 E-value=1.5e+02 Score=30.99 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=57.9
Q ss_pred eEEeecCchHHHH----HHHHHHHhcC---CeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCC
Q 004636 614 KVLVMDENGVSRS----VTKGLLLHLG---CDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHE 686 (740)
Q Consensus 614 ~ILIvdD~~~~~~----~l~~~L~~~g---~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~ 686 (740)
.+||.|++-...- .+...=+..+ .--+.+.|.+|+.+......|.|.+|-.- .+.++++.+... .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~-----~e~l~~~~~~~~---~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMS-----PEELREAVALLK---G 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcC-----HHHHHHHHHHcC---C
Confidence 4677776643321 1222222233 22357899999999888889999999532 455555543321 2
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
..|+++ ++.-+.+......+.|+|.+-
T Consensus 226 ~ipi~A-iGGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 226 RVLLEA-SGGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 455664 666678888899999999854
No 271
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.56 E-value=1.3e+02 Score=30.14 Aligned_cols=57 Identities=11% Similarity=0.164 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHH
Q 004636 664 CVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSV 726 (740)
Q Consensus 664 ~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~ 726 (740)
.|-.-+.++.++++++.+ +. .+|-...-.+.++..++.++|++ |+.-|.--.++.+.
T Consensus 36 t~~tp~a~~~I~~l~~~~----~~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~ 92 (201)
T PRK06015 36 TLRTPAALDAIRAVAAEV----EE-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAA 92 (201)
T ss_pred eCCCccHHHHHHHHHHHC----CC-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 333445666666665432 22 23444444556666677777776 44445544444443
No 272
>PRK10263 DNA translocase FtsK; Provisional
Probab=45.47 E-value=1.2e+02 Score=38.53 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=13.8
Q ss_pred hhhhH---HHHHHHhhHhHHHHh
Q 004636 22 YISDF---FIALAYFSIPLELIY 41 (740)
Q Consensus 22 ~~sd~---~i~~~y~~i~~~~~~ 41 (740)
.+||+ +++++.|.||+.+++
T Consensus 70 ~LAD~L~~LFGl~AYLLP~LL~~ 92 (1355)
T PRK10263 70 WLADTLFFIFGVMAYTIPVIIVG 92 (1355)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 55664 467788889986644
No 273
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.38 E-value=2.2e+02 Score=31.97 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=55.1
Q ss_pred eEEeecCchH---HHHHHHHHHHhcCCeEEEeCCHHHHHHHHC--CCCeEEEEecCCCCCCH--HHHHHHHHHhhc-cCC
Q 004636 614 KVLVMDENGV---SRSVTKGLLLHLGCDVMTVSSVEECFRVVS--HEHQVVFMDVCVPGIDG--YEVAVHIHDKFT-RRH 685 (740)
Q Consensus 614 ~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~~~--~~~dlvl~D~~mp~~dG--~e~~~~Ir~~~~-~~~ 685 (740)
+|.+|+-|+- ..+.+..+-+..|+.+..+.+..+....+. ..+|+||+|- |+.+. ...+..+++... ...
T Consensus 253 ~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~~~~ 330 (424)
T PRK05703 253 KVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEFSGE 330 (424)
T ss_pred eEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhccCC
Confidence 5666665552 123344444556777777777766555542 3689999996 33222 222333333222 112
Q ss_pred CCceEEEEecCCCHHHHHHHH----HcCCCeEEECCCC
Q 004636 686 ERPLIVALTGSTDNLTKDNCM----RVGMDGVILKPVS 719 (740)
Q Consensus 686 ~~~~II~lt~~~~~~~~~~~l----~~Ga~~~i~KP~~ 719 (740)
+....+++++.....+..+.. ..|.+.+|.--++
T Consensus 331 ~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlD 368 (424)
T PRK05703 331 PIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLD 368 (424)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 333466678777665554433 3467776554444
No 274
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.14 E-value=35 Score=33.55 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=40.3
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEecC
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVC 664 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D~~ 664 (740)
.+||+||.....---+.+++++.|+++.+..|...-...+ ...||.|++.-.
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPG 54 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPG 54 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCC
Confidence 4799999999999999999999999988776653223333 456899998754
No 275
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=44.98 E-value=2.9e+02 Score=27.45 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=54.9
Q ss_pred HHHHhcCCeEEE-e--CCHHHHHHHHCCCCeEEEEecCCCCCCH-------HHHHHHHHHhhccCCCCceEEEEecCCCH
Q 004636 630 GLLLHLGCDVMT-V--SSVEECFRVVSHEHQVVFMDVCVPGIDG-------YEVAVHIHDKFTRRHERPLIVALTGSTDN 699 (740)
Q Consensus 630 ~~L~~~g~~v~~-a--~~g~eal~~~~~~~dlvl~D~~mp~~dG-------~e~~~~Ir~~~~~~~~~~~II~lt~~~~~ 699 (740)
+.++..|..+.. + .+..+.++.+....|.|.++-.-|+.+| ++-++++++.... ...++.|++.+.-+.
T Consensus 103 ~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~-~~~~~~i~v~GGI~~ 181 (220)
T PRK05581 103 QLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE-RGLDILIEVDGGINA 181 (220)
T ss_pred HHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHh-cCCCceEEEECCCCH
Confidence 334455766443 2 2345555555445677777654465544 3444445432211 111245556677777
Q ss_pred HHHHHHHHcCCCeEEE-----CCCCHHHHHHHHHHH
Q 004636 700 LTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSDL 730 (740)
Q Consensus 700 ~~~~~~l~~Ga~~~i~-----KP~~~~~L~~~l~~~ 730 (740)
+...++.+.|+|.++. |.-++.+-...+++.
T Consensus 182 ~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 182 DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 8888888999997654 444555555555444
No 276
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=44.94 E-value=17 Score=42.06 Aligned_cols=49 Identities=20% Similarity=0.391 Sum_probs=29.7
Q ss_pred EEEEEecCCCCCcCChhh--------hhhcccccccc----cCCCCCCcchhHHHHHHHHH
Q 004636 512 RVQVKDSGSGISPQDIPN--------LFTKFAQNQAI----ALRNSSGSGLGLAICKRFVN 560 (740)
Q Consensus 512 ~i~V~D~G~GI~~e~l~~--------iF~~F~~~~~~----~~~~~~GtGLGLaI~k~iv~ 560 (740)
.|+|.|+|.|||-+..++ ||.....+..- ..-+++=.|.|.+.|..+-+
T Consensus 69 sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~ 129 (635)
T COG0187 69 SISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALST 129 (635)
T ss_pred eEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccc
Confidence 489999999999877433 45433222211 11122346888888776654
No 277
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=44.43 E-value=39 Score=30.23 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHhhHhHHHHhHhhhcCCC--chHHHHHHH
Q 004636 27 FIALAYFSIPLELIYFVKKSAVF--PYRWVLVQF 58 (740)
Q Consensus 27 ~i~~~y~~i~~~~~~~~~~~~~~--~~~~~~~~~ 58 (740)
...+..-+|+..++.+++|+.|+ .|+|...+.
T Consensus 65 avcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~~~ 98 (118)
T PF10856_consen 65 AVCILLICISAILLIFWYRQGDLDPKFRYLIYYN 98 (118)
T ss_pred HHHHHHHHHHHHhheeehhcCCCChhHHHHHHHH
Confidence 34445556666677777777776 266665443
No 278
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=44.42 E-value=1.7e+02 Score=29.34 Aligned_cols=91 Identities=9% Similarity=0.077 Sum_probs=52.5
Q ss_pred HHHhcCC-eEEEeCCHHHHHHHHC----CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHH
Q 004636 631 LLLHLGC-DVMTVSSVEECFRVVS----HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNC 705 (740)
Q Consensus 631 ~L~~~g~-~v~~a~~g~eal~~~~----~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~ 705 (740)
.|++.+. -|....+.+++.+... .... ++.+.+-.-++.+.++.+++.+ +.+.+|-...-.+.++...+
T Consensus 6 ~l~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~~~----~~~~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 6 PFTKLPLIAILRGITPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVKAL----GDRALIGAGTVLSPEQVDRL 79 (206)
T ss_pred HHHhCCEEEEEeCCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHc----CCCcEEeEEecCCHHHHHHH
Confidence 4444443 2335566666665442 2333 3444555557888887776532 22335555555677788889
Q ss_pred HHcCCCeEEECCCCHHHHHHHHH
Q 004636 706 MRVGMDGVILKPVSLEKMRSVLS 728 (740)
Q Consensus 706 l~~Ga~~~i~KP~~~~~L~~~l~ 728 (740)
.++|++. +.-|....++.+..+
T Consensus 80 ~~aGA~f-ivsp~~~~~v~~~~~ 101 (206)
T PRK09140 80 ADAGGRL-IVTPNTDPEVIRRAV 101 (206)
T ss_pred HHcCCCE-EECCCCCHHHHHHHH
Confidence 9999974 555766656655543
No 279
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.01 E-value=1.6e+02 Score=29.59 Aligned_cols=80 Identities=8% Similarity=0.144 Sum_probs=44.8
Q ss_pred EEEeCCHHHHHHHH----CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 639 VMTVSSVEECFRVV----SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 639 v~~a~~g~eal~~~----~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
|....+.+++++.. ....+++=+.++- -+.++.++++++.+ +.. +|-...-.+.++..++.++||+ |+
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~----~~~-~vGAGTVl~~~~a~~a~~aGA~-Fi 84 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEV----PDA-LIGAGTVLNPEQLRQAVDAGAQ-FI 84 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHC----CCC-EEEEEeCCCHHHHHHHHHcCCC-EE
Confidence 33455666665543 2345544444433 45777777776432 232 3444445667777788888887 45
Q ss_pred ECCCCHHHHHHH
Q 004636 715 LKPVSLEKMRSV 726 (740)
Q Consensus 715 ~KP~~~~~L~~~ 726 (740)
.-|..-.++.+.
T Consensus 85 vsP~~~~~v~~~ 96 (204)
T TIGR01182 85 VSPGLTPELAKH 96 (204)
T ss_pred ECCCCCHHHHHH
Confidence 556555555444
No 280
>PRK07695 transcriptional regulator TenI; Provisional
Probab=43.79 E-value=1.8e+02 Score=28.70 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=52.5
Q ss_pred EeCCHHHHHHHHCCCCeEEEEecCCC-----C--CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeE
Q 004636 641 TVSSVEECFRVVSHEHQVVFMDVCVP-----G--IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGV 713 (740)
Q Consensus 641 ~a~~g~eal~~~~~~~dlvl~D~~mp-----~--~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~ 713 (740)
.+.+.+++.++.+...|.|+.+-..| + ..|++.++++++. ...||+++.+- +.+....+++.|++++
T Consensus 101 s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-----~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-----LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 45566676665556778777654222 1 2367777777532 23668876555 7888889999999987
Q ss_pred E-----ECCCCHHHHHHHHHHHH
Q 004636 714 I-----LKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 714 i-----~KP~~~~~L~~~l~~~l 731 (740)
. .+.-++.+-...+.+.+
T Consensus 175 av~s~i~~~~~p~~~~~~~~~~~ 197 (201)
T PRK07695 175 AVMSGIFSSANPYSKAKRYAESI 197 (201)
T ss_pred EEEHHHhcCCCHHHHHHHHHHHH
Confidence 3 23334555555555444
No 281
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.44 E-value=3.6e+02 Score=28.20 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=49.7
Q ss_pred ceEEeecCchH---HHHHHHHHHHhcCCeEEEeCC---HH----HHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhh
Q 004636 613 LKVLVMDENGV---SRSVTKGLLLHLGCDVMTVSS---VE----ECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKF 681 (740)
Q Consensus 613 ~~ILIvdD~~~---~~~~l~~~L~~~g~~v~~a~~---g~----eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~ 681 (740)
.+|+++|-|.. ..+.+..+.+..|..+..... .. ++++.. ...+|+||+|--=-...--+...++++..
T Consensus 101 ~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~ 180 (272)
T TIGR00064 101 KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIK 180 (272)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHH
Confidence 46777775542 234455556666766554332 21 223322 35689999996311111222333332211
Q ss_pred cc------CCCCceEEEEecCCCHHHHHHHH----HcCCCeEEECCC
Q 004636 682 TR------RHERPLIVALTGSTDNLTKDNCM----RVGMDGVILKPV 718 (740)
Q Consensus 682 ~~------~~~~~~II~lt~~~~~~~~~~~l----~~Ga~~~i~KP~ 718 (740)
.. ..+.-.++++.+....+....+. ..|.+++|.-=+
T Consensus 181 ~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKl 227 (272)
T TIGR00064 181 RVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKL 227 (272)
T ss_pred HHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 11 11333456666665554333332 256777655433
No 282
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=42.52 E-value=1.3e+02 Score=30.32 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=56.4
Q ss_pred HHHHhcCCeE--EEeCCHHHHHHHHCCCCeEE--EEe-cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHH
Q 004636 630 GLLLHLGCDV--MTVSSVEECFRVVSHEHQVV--FMD-VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDN 704 (740)
Q Consensus 630 ~~L~~~g~~v--~~a~~g~eal~~~~~~~dlv--l~D-~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~ 704 (740)
+.|+..|..+ +.+-+..+|+.......+.| ++. +.=-+.||+++++++++..+..+....|++ .+.-+.....+
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~ 173 (213)
T TIGR00875 95 KILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLE 173 (213)
T ss_pred HHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHH
Confidence 3466677654 46788888888765444432 111 111246999999999888766556676664 55567777888
Q ss_pred HHHcCCCeEEE
Q 004636 705 CMRVGMDGVIL 715 (740)
Q Consensus 705 ~l~~Ga~~~i~ 715 (740)
+..+|+|.+-.
T Consensus 174 ~~~~G~d~vTi 184 (213)
T TIGR00875 174 AALIGADIATM 184 (213)
T ss_pred HHHcCCCEEEc
Confidence 88999996543
No 283
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=42.26 E-value=2e+02 Score=33.05 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=59.4
Q ss_pred CceEEeecC----chHHHHHHHHHHHhc-CCeEEE--eCCHHHHHHHHCCCCeEEEEec--------------CCCCCCH
Q 004636 612 GLKVLVMDE----NGVSRSVTKGLLLHL-GCDVMT--VSSVEECFRVVSHEHQVVFMDV--------------CVPGIDG 670 (740)
Q Consensus 612 ~~~ILIvdD----~~~~~~~l~~~L~~~-g~~v~~--a~~g~eal~~~~~~~dlvl~D~--------------~mp~~dG 670 (740)
|..++.+|- .....+.++.+-+.. +..+.. +.+.+++..++....|.|.+.+ ..|.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~--- 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQ--- 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCCh---
Confidence 456777774 233334454443332 333333 5667777777777778776543 2333
Q ss_pred HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 671 YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 671 ~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.++..+++... ....|||+=.+-....+..+|+.+||+.++.
T Consensus 330 ~~ai~~~~~~~~--~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 330 ASAVYHVARYAR--ERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred HHHHHHHHHHHh--hcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 334334433222 1236788767888899999999999998765
No 284
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=42.08 E-value=2.1e+02 Score=30.93 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=54.0
Q ss_pred HHHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEe-cCC----C-CC-CHHHHHHHHHHhhccCCCCceEEEEecCCCHHH
Q 004636 630 GLLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMD-VCV----P-GI-DGYEVAVHIHDKFTRRHERPLIVALTGSTDNLT 701 (740)
Q Consensus 630 ~~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D-~~m----p-~~-dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~ 701 (740)
+.++..|..+. .++|.++|..+.+..+|.|+.- ..- . .. +-+.+..++++.. .+|||+-.+-.+...
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~-----~iPViaAGGI~dg~~ 204 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV-----DIPVIAAGGIADGRG 204 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH------SS-EEEESS--SHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc-----CCcEEEecCcCCHHH
Confidence 45677787766 7899999998887788887764 211 1 22 3577777776532 277888788888888
Q ss_pred HHHHHHcCCCeEEE
Q 004636 702 KDNCMRVGMDGVIL 715 (740)
Q Consensus 702 ~~~~l~~Ga~~~i~ 715 (740)
...++..||+++..
T Consensus 205 iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 205 IAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHCT-SEEEE
T ss_pred HHHHHHcCCCEeec
Confidence 99999999999874
No 285
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=42.06 E-value=64 Score=31.67 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=41.3
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCe---EEEeCCHHHHHHHH---CCCCeEEEEecCCCCCCH---HHHHHHH
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCD---VMTVSSVEECFRVV---SHEHQVVFMDVCVPGIDG---YEVAVHI 677 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~---v~~a~~g~eal~~~---~~~~dlvl~D~~mp~~dG---~e~~~~I 677 (740)
+|..||-|+.....+++-++..|.. .+...|...++... ...+|+|++|- |-..+ .+++..|
T Consensus 67 ~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l 137 (183)
T PF03602_consen 67 SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELL 137 (183)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHH
Confidence 6889999999999999999988843 33556777777544 35789999995 43333 4455555
No 286
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=41.83 E-value=1.4e+02 Score=31.84 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=45.7
Q ss_pred EEeCCHHHHHHHHC------CCCeEEEEecC--CCCC---CHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHc
Q 004636 640 MTVSSVEECFRVVS------HEHQVVFMDVC--VPGI---DGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRV 708 (740)
Q Consensus 640 ~~a~~g~eal~~~~------~~~dlvl~D~~--mp~~---dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~ 708 (740)
+.+.|.+|+.+++. ...|+|++|=+ -|+- +--++.+.+ +.. ....+ +-.++.-+.+......+.
T Consensus 208 VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av-~~~---~~~~~-lEaSGGIt~~ni~~yA~t 282 (308)
T PLN02716 208 VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAV-ELI---NGRFE-TEASGNVTLDTVHKIGQT 282 (308)
T ss_pred EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHH-Hhh---CCCce-EEEECCCCHHHHHHHHHc
Confidence 47889999999888 78899999953 1221 222222222 221 22333 567888899998888899
Q ss_pred CCCeE
Q 004636 709 GMDGV 713 (740)
Q Consensus 709 Ga~~~ 713 (740)
|+|-.
T Consensus 283 GVD~I 287 (308)
T PLN02716 283 GVTYI 287 (308)
T ss_pred CCCEE
Confidence 99854
No 287
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=41.68 E-value=3.2e+02 Score=27.53 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=43.9
Q ss_pred HHHHHHH-CCCCe-EEEEecCCCCC-CH--HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 646 EECFRVV-SHEHQ-VVFMDVCVPGI-DG--YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 646 ~eal~~~-~~~~d-lvl~D~~mp~~-dG--~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.+..+.+ ....+ ++++|+.--++ .| +++++++++. ...|+++-.+-.+.++..++++.|+++++.
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-----~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA-----VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3444434 34555 78888854332 22 6778777543 335688778888888988999999999875
No 288
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=41.65 E-value=2.3e+02 Score=28.70 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=59.7
Q ss_pred HHHHhcCCeEEEeCCH---HHHHHHHCCCCeE-EEEecCCCCCCH-------HHHHHHHHHhhccCCCCceEEEEecCCC
Q 004636 630 GLLLHLGCDVMTVSSV---EECFRVVSHEHQV-VFMDVCVPGIDG-------YEVAVHIHDKFTRRHERPLIVALTGSTD 698 (740)
Q Consensus 630 ~~L~~~g~~v~~a~~g---~eal~~~~~~~dl-vl~D~~mp~~dG-------~e~~~~Ir~~~~~~~~~~~II~lt~~~~ 698 (740)
..+++.|+.+-.+=|. .+.++-+-...|+ ++|-+ -|+..| ++-++++|+.....+...+|. +-+.-+
T Consensus 100 ~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV-~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~-vdGGI~ 177 (220)
T PRK08883 100 QLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV-NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLE-IDGGVK 177 (220)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEe-cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEE-EECCCC
Confidence 4567788887766433 3444433234454 45544 466655 455666655443323345555 466677
Q ss_pred HHHHHHHHHcCCCeEEE-----CCCCHHHHHHHHHHHHc
Q 004636 699 NLTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 699 ~~~~~~~l~~Ga~~~i~-----KP~~~~~L~~~l~~~l~ 732 (740)
.+....+.++|||.++. +.-++.+....+++.+.
T Consensus 178 ~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~ 216 (220)
T PRK08883 178 VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELA 216 (220)
T ss_pred HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 88888999999997753 44456666666665543
No 289
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=41.16 E-value=2e+02 Score=28.90 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=54.7
Q ss_pred HHHhcCCe--EEEeCCHHHHHHHHCCCCeEE--EEe-cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHH
Q 004636 631 LLLHLGCD--VMTVSSVEECFRVVSHEHQVV--FMD-VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNC 705 (740)
Q Consensus 631 ~L~~~g~~--v~~a~~g~eal~~~~~~~dlv--l~D-~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~ 705 (740)
.|++.|.. +..+-|..+|+.......+.| +++ +.=-+.||.++++++.+..+..+....|+ ..+--+..+..++
T Consensus 96 ~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil-~As~r~~~ei~~a 174 (211)
T cd00956 96 KLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKIL-AASIRNPQHVIEA 174 (211)
T ss_pred HHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEE-ecccCCHHHHHHH
Confidence 45555754 457889999988775444431 111 11136799999999987776544444555 4555677778889
Q ss_pred HHcCCCeEEE
Q 004636 706 MRVGMDGVIL 715 (740)
Q Consensus 706 l~~Ga~~~i~ 715 (740)
..+|++-+-.
T Consensus 175 ~~~Gad~vTv 184 (211)
T cd00956 175 ALAGADAITL 184 (211)
T ss_pred HHcCCCEEEe
Confidence 9999996543
No 290
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=41.06 E-value=1.1e+02 Score=32.03 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=58.4
Q ss_pred eEEeecCchHHH----HHHHHHHHhcC--C-eEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCC
Q 004636 614 KVLVMDENGVSR----SVTKGLLLHLG--C-DVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHE 686 (740)
Q Consensus 614 ~ILIvdD~~~~~----~~l~~~L~~~g--~-~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~ 686 (740)
.+||.|++.... ..+...=+..| . --+.+.|.+|+.++.....|.|.+|-.-| +-++++.+... .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~-----e~lk~~v~~~~---~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKP-----EEIKEAVQLLK---G 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCH-----HHHHHHHHHhc---C
Confidence 467777764332 12222222234 2 23478999999999888899999987444 44444433221 2
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
..||++ ++.-+.+......+.|+|.+-.
T Consensus 222 ~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 255664 6667788888999999998653
No 291
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=40.72 E-value=2.7e+02 Score=30.96 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCeEEEeCCHHHHHHHHC--CCCeEEEEe-cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHH
Q 004636 626 SVTKGLLLHLGCDVMTVSSVEECFRVVS--HEHQVVFMD-VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTK 702 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~~a~~g~eal~~~~--~~~dlvl~D-~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~ 702 (740)
+.++.+-+-+|+.+..+.+++|..+.+. ..+|+||+| ..++-.|... +.+++......++.-.-+++++.....+.
T Consensus 250 EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~-i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 250 EQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEK-IEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred HHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHH-HHHHHHHHhccccceEEEEEecCcchHHH
Confidence 4455555667899999999999877663 467999999 6677777654 35665554433333334556776666666
Q ss_pred HHHHH----cCCCeEEECCCC
Q 004636 703 DNCMR----VGMDGVILKPVS 719 (740)
Q Consensus 703 ~~~l~----~Ga~~~i~KP~~ 719 (740)
.+.++ .+.+++|.--+|
T Consensus 329 kei~~~f~~~~i~~~I~TKlD 349 (407)
T COG1419 329 KEIIKQFSLFPIDGLIFTKLD 349 (407)
T ss_pred HHHHHHhccCCcceeEEEccc
Confidence 55554 578887765444
No 292
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=40.40 E-value=1.5e+02 Score=25.13 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHhhhhhH-HHhhHHHHHHHHHhhc
Q 004636 96 VVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQ-EETGRHVRMLTHEIRS 155 (740)
Q Consensus 96 ~~s~~ta~~l~~~~p~~~~~~~~~ll~~~~a~~l~~e~~~~~~~-~~~~~~l~~lt~~i~~ 155 (740)
++.++-++..+.++|-+.++...-.-......++++++..+..+ .+.......++.++..
T Consensus 5 I~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 5 IAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555565656555432122223344455555444332 2223334444444443
No 293
>COG4377 Predicted membrane protein [Function unknown]
Probab=40.19 E-value=53 Score=32.34 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=31.3
Q ss_pred HHHHhhHhHHHHhHhhhcCCCchHHHHHHHHHHHH----HhhHHHH
Q 004636 29 ALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIV----LCGATHL 70 (740)
Q Consensus 29 ~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~----~cg~~h~ 70 (740)
|+|..++|+..++|.+||-|+..+-+++=-.+|.+ +=|+-|.
T Consensus 15 aiall~~pIG~i~w~krky~~~l~v~g~GA~~Ffvf~qiLE~~vHv 60 (258)
T COG4377 15 AIALLAFPIGSIWWAKRKYQINLAVLGLGAVAFFVFSQILEKLVHV 60 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHhccceE
Confidence 78888999999999999988887766654444544 4566664
No 294
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.80 E-value=2.1e+02 Score=33.83 Aligned_cols=94 Identities=11% Similarity=0.186 Sum_probs=59.0
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCC-HHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSS-VEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
+..+.++|.|+...+.+ ++.|+.+...+- -.+.++... .+.|+++.-..=+. +-..+++.+|+ ..+..+
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~-~n~~i~~~~r~----~~p~~~ 493 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPE-DTMKIVELCQQ----HFPHLH 493 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHH-HHHHHHHHHHH----HCCCCe
Confidence 45689999998765533 456888776543 344555553 46787777553322 23455555553 346667
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEEC
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILK 716 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~K 716 (740)
||+-+. +.+...+..++|+|.++.-
T Consensus 494 IiaRa~--~~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 494 ILARAR--GRVEAHELLQAGVTQFSRE 518 (601)
T ss_pred EEEEeC--CHHHHHHHHhCCCCEEEcc
Confidence 875443 4566778889999988764
No 295
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=39.53 E-value=3.8e+02 Score=26.35 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCeEEEe-CCH----HHHHHHHCCCCeEEEEecCCC----CCCHHHHHHHHHHhhccCCCCceEEEEecC
Q 004636 626 SVTKGLLLHLGCDVMTV-SSV----EECFRVVSHEHQVVFMDVCVP----GIDGYEVAVHIHDKFTRRHERPLIVALTGS 696 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~~a-~~g----~eal~~~~~~~dlvl~D~~mp----~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~ 696 (740)
..+.+..++.|..+... .+. +++..+.....|+|-+.-... ...+++-++++++.. +.++ |++++.
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~----~~~~-i~v~GG 166 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLV----KEAR-VAVAGG 166 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhc----CCCc-EEEECC
Confidence 33445566778888754 343 444445455778886642110 112455556665432 2343 445677
Q ss_pred CCHHHHHHHHHcCCCeEEE-----CCCCHHHHHHHHHH
Q 004636 697 TDNLTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSD 729 (740)
Q Consensus 697 ~~~~~~~~~l~~Ga~~~i~-----KP~~~~~L~~~l~~ 729 (740)
...+....++++|++.++. +.-++.+..+.+++
T Consensus 167 I~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~ 204 (206)
T TIGR03128 167 INLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRK 204 (206)
T ss_pred cCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHh
Confidence 7888888999999997766 44455555544443
No 296
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=39.52 E-value=1.7e+02 Score=30.75 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=47.5
Q ss_pred EEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHH-HHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 639 VMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGY-EVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 639 v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~-e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
-+.+.|.+|+.+......|.|.+|-.-|. ++ ++.+.++ ...+..|+++ ++.-+.+...+..+.|+|.+..
T Consensus 187 gVev~t~eea~~A~~~gaD~I~ld~~~p~--~l~~~~~~~~----~~~~~i~i~A-sGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAEAGADILQLDKFSPE--ELAELVPKLR----SLAPPVLLAA-AGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHHcCCCEEEECCCCHH--HHHHHHHHHh----ccCCCceEEE-ECCCCHHHHHHHHHcCCcEEEE
Confidence 34678999999888778899999955442 22 2222222 2223456664 5666788888999999998753
No 297
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=39.42 E-value=2.3e+02 Score=29.57 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=45.8
Q ss_pred eEEeecCchHHHHHHHHHHHhcC-----CeEE-EeCCHHHHHHHHCCCCeEEEEecCCCCCC-----HHHHHHHHHHhhc
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLG-----CDVM-TVSSVEECFRVVSHEHQVVFMDVCVPGID-----GYEVAVHIHDKFT 682 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g-----~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~d-----G~e~~~~Ir~~~~ 682 (740)
++.+||-++.+.+..++.+...+ -.+. ...|+.+.++.....+|+|++|..-|... .-++.+.+++..+
T Consensus 98 ~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~ 177 (270)
T TIGR00417 98 KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALN 177 (270)
T ss_pred eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhC
Confidence 68899999999888888775432 1222 34677776665556899999998654322 2456666665543
No 298
>PRK05415 hypothetical protein; Provisional
Probab=39.40 E-value=3e+02 Score=29.93 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=19.0
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 004636 68 THLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKT 117 (740)
Q Consensus 68 ~h~~~~~~~~~~~~~~~~~~~~~k~~ta~~s~~ta~~l~~~~p~~~~~~~ 117 (740)
-++.+.|. -+.|++|.- -++.+++.++....+++=+=++-+++.
T Consensus 87 ~~i~~~~~---~~~wlg~~~---~~~~~~~~~~~~~~~~rE~~~l~rL~~ 130 (341)
T PRK05415 87 QWLRDAFQ---RSDWLGLGA---AVVGALIVLAGLGIVVREWRRLRRLRQ 130 (341)
T ss_pred HHHHHHHH---hCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 344455432 334444444444444444333344443
No 299
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=39.32 E-value=1.2e+02 Score=30.60 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=52.6
Q ss_pred hHHhhhhhHHHHHHHhhHhHHHHhHhhh-cCCCchHHHHHHHHHHHHHhhHHHHHHHHhcccchh-------HHHHHHH-
Q 004636 18 MKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSR-------TVAIVMT- 88 (740)
Q Consensus 18 ~~~~~~sd~~i~~~y~~i~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~-------~~~~~~~- 88 (740)
.--++.|..+...+.|.|.+.|++++-+ |...-+..++++++=||+. .-|+++.+.= .|.| +--|+.-
T Consensus 56 ~ia~~~ss~~~~~~l~~~slsll~gvI~~r~~~l~pfl~~Qi~D~~~c--ll~~~g~yie-~pa~l~~~~~~~~~~liPF 132 (258)
T TIGR00799 56 RIADLYSSFLLINALFIISVSLLMGVVKNREKYLYPFLSLQIMDFLLC--LLTLLGSYIE-LPAYLKLARPRPGPSKIPL 132 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeHHHHHHHHHHHHH--HHHHhhhhhc-chhhhhhccccCccccchH
Confidence 4456777777788889999999999655 4444344456666655541 2333333331 1100 0001111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhh
Q 004636 89 -TAKVLTAVVSCATALMLVHIIPDL 112 (740)
Q Consensus 89 -~~k~~ta~~s~~ta~~l~~~~p~~ 112 (740)
-..++-..+|+.||+.-..-+|.-
T Consensus 133 fclQifDF~Ls~Lta~ss~~ylp~y 157 (258)
T TIGR00799 133 MTLQLLDFCLSILTLCSSYMEVPTY 157 (258)
T ss_pred HHHHHHHHHHHHHHHhhhheechHH
Confidence 114566678888888887777743
No 300
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.20 E-value=1.8e+02 Score=30.64 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=47.8
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.+.|.+|+.+.....+|.|.+|- =|.+.++++++.. ..+.|+. .++.-+.+......+.|+|.+-.
T Consensus 193 vsv~tleea~~A~~~gaDyI~lD~-----~~~e~l~~~~~~~---~~~i~i~-AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 193 VETETEEQVREAVAAGADIIMFDN-----RTPDEIREFVKLV---PSAIVTE-ASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred EEeCCHHHHHHHHHcCCCEEEECC-----CCHHHHHHHHHhc---CCCceEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 477899999998888889999983 2456676665432 1223344 46667888888999999998643
No 301
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=39.10 E-value=37 Score=28.11 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=36.9
Q ss_pred CCC-CCC-CCCCchhhhhHHhhhhhHHHHHHHhhHhHHHHhHhhhcCCCchHHHHHHHHHHHH
Q 004636 3 SCN-CIE-PQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIV 63 (740)
Q Consensus 3 ~~~-~~~-~~~~~~~~~~~~~~~sd~~i~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 63 (740)
.|+ |.+ -+|+. +.+++.--|-+..++-.+=| ++|+..+-.-.+-..|-++|++|..
T Consensus 2 ~C~~C~~~~F~~K---iGRC~rCM~QLtvLs~~~w~--iWw~~f~d~P~sieSIALl~~~~Af 59 (77)
T PF12292_consen 2 ACNDCQESWFWQK---IGRCQRCMWQLTVLSVLSWP--IWWFFFRDTPTSIESIALLFFCFAF 59 (77)
T ss_pred ChhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHH--HHHHHHcCCcchHHHHHHHHHHHHH
Confidence 454 543 36665 58899888998888887777 3454444333456678887777654
No 302
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=39.05 E-value=3.5e+02 Score=30.95 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=60.9
Q ss_pred CceEEeecCc-h---HHHHHHHHHHHhc-CCeEE--EeCCHHHHHHHHCCCCeEEEEecCCCC------------CCHHH
Q 004636 612 GLKVLVMDEN-G---VSRSVTKGLLLHL-GCDVM--TVSSVEECFRVVSHEHQVVFMDVCVPG------------IDGYE 672 (740)
Q Consensus 612 ~~~ILIvdD~-~---~~~~~l~~~L~~~-g~~v~--~a~~g~eal~~~~~~~dlvl~D~~mp~------------~dG~e 672 (740)
+..++++|.. . .....+..+-++. +..+. .+.+.++|..+.....|.|-+.+ -|+ ..-++
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~-g~gs~~~~r~~~~~g~p~~~ 318 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGI-GPGSICTTRIVAGVGVPQIT 318 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECC-CCCccccceeecCCCcCHHH
Confidence 4567888754 1 2223333333333 33333 34667788887777778776533 122 11245
Q ss_pred HHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 673 ~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
++..+++... ....|||+=.+-....+..+|+.+||+.++.
T Consensus 319 ~~~~~~~~~~--~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 319 AIADAAEAAK--KYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHhc--cCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 5655544322 2246788877888999999999999998654
No 303
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.05 E-value=4.2e+02 Score=27.15 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCeEEEeCCH---HHHHH-HHCCCCeEEEEecCCCCCCH------HHHHHHHHHhhccCCCCceEEEEecC
Q 004636 627 VTKGLLLHLGCDVMTVSSV---EECFR-VVSHEHQVVFMDVCVPGIDG------YEVAVHIHDKFTRRHERPLIVALTGS 696 (740)
Q Consensus 627 ~l~~~L~~~g~~v~~a~~g---~eal~-~~~~~~dlvl~D~~mp~~dG------~e~~~~Ir~~~~~~~~~~~II~lt~~ 696 (740)
.+...+++.|.++..+-+. .+-++ .+....++++| -.+|+..+ .+.++++|+.. +..||+ +-+.
T Consensus 120 ~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~----~~~~i~-v~gG 193 (244)
T PRK13125 120 KYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV----GNKYLV-VGFG 193 (244)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc----CCCCEE-EeCC
Confidence 4556667889887654332 33444 44556677878 44665322 34555565432 122354 4444
Q ss_pred C-CHHHHHHHHHcCCCeEEECC
Q 004636 697 T-DNLTKDNCMRVGMDGVILKP 717 (740)
Q Consensus 697 ~-~~~~~~~~l~~Ga~~~i~KP 717 (740)
- +.++..++.++|+|+++.-.
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 4 77888888999999998764
No 304
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.74 E-value=3.2e+02 Score=30.51 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=47.6
Q ss_pred eCCHHHHHHHHCCCCeEEEEecCCCCC------------CHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcC
Q 004636 642 VSSVEECFRVVSHEHQVVFMDVCVPGI------------DGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVG 709 (740)
Q Consensus 642 a~~g~eal~~~~~~~dlvl~D~~mp~~------------dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~G 709 (740)
+.+.++|..++....|.|...+. |+. .-++++..+++... ....|||+=.+-....+..+|+.+|
T Consensus 202 V~T~e~a~~l~~aGaD~I~vG~g-~Gs~c~tr~~~g~g~p~ltai~~v~~~~~--~~~vpVIAdGGI~~~~Di~KALalG 278 (404)
T PRK06843 202 IVTKEAALDLISVGADCLKVGIG-PGSICTTRIVAGVGVPQITAICDVYEVCK--NTNICIIADGGIRFSGDVVKAIAAG 278 (404)
T ss_pred cCCHHHHHHHHHcCCCEEEECCC-CCcCCcceeecCCCCChHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcC
Confidence 67788888887777888775431 211 12344444433221 2236799888889999999999999
Q ss_pred CCeEEE
Q 004636 710 MDGVIL 715 (740)
Q Consensus 710 a~~~i~ 715 (740)
|+.++.
T Consensus 279 A~aVmv 284 (404)
T PRK06843 279 ADSVMI 284 (404)
T ss_pred CCEEEE
Confidence 998764
No 305
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.12 E-value=5.5e+02 Score=27.76 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004636 334 RREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDG 408 (740)
Q Consensus 334 ~~~~e~~~~~k~~fla~iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g 408 (740)
++.+++..+..+.-.+.++|.-+.. ..+.....-++. ..+++..+.++.+.+...+....+.|+-.+---.+|
T Consensus 24 ~qKleel~~lQ~~C~ssI~~QkkrL-k~L~~sLk~~~~-~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkkNG 96 (330)
T PF07851_consen 24 KQKLEELSKLQDKCSSSISHQKKRL-KELKKSLKRCKK-SLSAEERELIEKLEEDIKERRCQLFDMEAFLPKKNG 96 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHHHhhHHHHHhhCCCCCC
Confidence 3445555566777888899988853 333333333322 356677888888888888877777777655433333
No 306
>COG4708 Predicted membrane protein [Function unknown]
Probab=37.70 E-value=1.9e+02 Score=27.09 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=44.4
Q ss_pred hHHHHHHHhhHhHHH--HhHhhhcCCCchHHH----HHHHHHHHHHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 004636 25 DFFIALAYFSIPLEL--IYFVKKSAVFPYRWV----LVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVS 98 (740)
Q Consensus 25 d~~i~~~y~~i~~~~--~~~~~~~~~~~~~~~----~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~ta~~s 98 (740)
|.+.+-.--.|-+.| +||.++.+|.-|+++ +..|+.|....-.+--++..-..+-.+-+.|.. -++.=+||
T Consensus 74 Dv~~G~~sT~I~l~Lgv~~f~ky~Kdy~~ngi~~k~~i~~~i~fsism~~ia~EL~iv~~~PFlltw~t---ta~gEfvs 150 (169)
T COG4708 74 DVFVGGLSTLIFLSLGVILFSKYSKDYLFNGIINKAFIFFSILFSISMFIIAMELKIVAHAPFLLTWFT---TALGEFVS 150 (169)
T ss_pred HHHhccHHHHHHHHHHHHhhhhhhhhhhhcccchhhhhhccHHHHHHHHHHHHhhhhhcCCcHHHHHHH---HHHHHHHH
Confidence 445554444555555 999999998666544 333444333333333444444443345566654 45555677
Q ss_pred HHHHHHHHHH
Q 004636 99 CATALMLVHI 108 (740)
Q Consensus 99 ~~ta~~l~~~ 108 (740)
++....+.-.
T Consensus 151 l~vg~~~m~k 160 (169)
T COG4708 151 LYVGALIMDK 160 (169)
T ss_pred HHhhHHHHHH
Confidence 7766554443
No 307
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=37.69 E-value=1.7e+02 Score=35.43 Aligned_cols=106 Identities=8% Similarity=0.008 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHhcCCeEEE--eCCHHHHHHHHC-CCCeEEEEecCCC-----CCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 621 NGVSRSVTKGLLLHLGCDVMT--VSSVEECFRVVS-HEHQVVFMDVCVP-----GIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 621 ~~~~~~~l~~~L~~~g~~v~~--a~~g~eal~~~~-~~~dlvl~D~~mp-----~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
....+..+ ..|++.||.+.. +.+|...+..+. -++|.|=+|-.+- +.....+++.|....+. -...+|
T Consensus 677 ~~~~~~~l-~~l~~~G~~i~ld~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~vi- 752 (799)
T PRK11359 677 DTEIFKRI-QILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQS--LNLTVV- 752 (799)
T ss_pred HHHHHHHH-HHHHHCCCEEEEECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHH--CCCeEE-
Confidence 34445544 457788999865 567777777664 4689999986541 12234555555443322 223355
Q ss_pred EecCCCHHHHHHHHHcCCCe----EEECCCCHHHHHHHHHHH
Q 004636 693 LTGSTDNLTKDNCMRVGMDG----VILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~----~i~KP~~~~~L~~~l~~~ 730 (740)
.++-.+.+....+.+.|++. |+.||...++|...+++.
T Consensus 753 a~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 753 AEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred EEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 58888888888999999973 788999999999987765
No 308
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=37.64 E-value=3.6e+02 Score=27.76 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=54.5
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHH-HHCCCCeEEEEecC-----------------------CCCC
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFR-VVSHEHQVVFMDVC-----------------------VPGI 668 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~-~~~~~~dlvl~D~~-----------------------mp~~ 668 (740)
.+|..+|-++...+..++-++..|.++.. .|..+.+. .....+|+|++|.- ..+.
T Consensus 111 ~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~ 189 (251)
T TIGR03704 111 IELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA 189 (251)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC
Confidence 36788898888888887777766655433 33333332 12346899999841 1235
Q ss_pred CHHHHHHHHHHhhc-cCCCCceEEEEecCCCHHHHHHHH-HcCC
Q 004636 669 DGYEVAVHIHDKFT-RRHERPLIVALTGSTDNLTKDNCM-RVGM 710 (740)
Q Consensus 669 dG~e~~~~Ir~~~~-~~~~~~~II~lt~~~~~~~~~~~l-~~Ga 710 (740)
||+++.+.|-+... --.+.-.+++.+...........+ +.|.
T Consensus 190 dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~ 233 (251)
T TIGR03704 190 DGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGL 233 (251)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCC
Confidence 78877776632211 112233355556555555444444 3454
No 309
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.58 E-value=2.1e+02 Score=28.71 Aligned_cols=17 Identities=29% Similarity=0.835 Sum_probs=8.5
Q ss_pred hHHHHHHH-----HHHHHHhhH
Q 004636 51 YRWVLVQF-----GAFIVLCGA 67 (740)
Q Consensus 51 ~~~~~~~~-----~~f~~~cg~ 67 (740)
|+|.++.| +.|.+.|-.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (205)
T PRK06231 9 FKLLLLSFSFLIISLFLVSCTE 30 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 55554444 445556643
No 310
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.41 E-value=1.7e+02 Score=30.85 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=47.6
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+.+.|.+|+.+.+...+|+|.+|- | |.+-++++.+.. .+..|+. .++.-+.+....+.+.|+|.+-+
T Consensus 194 VEv~tleea~eA~~~gaD~I~LD~-~----~~e~l~~~v~~~---~~~i~le-AsGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 194 VEVESLDELRQALAAGADIVMLDE-L----SLDDMREAVRLT---AGRAKLE-ASGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred EEeCCHHHHHHHHHcCCCEEEECC-C----CHHHHHHHHHHh---CCCCcEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 467899999998888899999984 3 455555554332 1345566 46667788888999999997654
No 311
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=37.34 E-value=3.2e+02 Score=30.11 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cHHHHHHHH
Q 004636 52 RWVLVQFGAFIVLCGATHLINLWTF----NMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVK--TRELFLKNK 125 (740)
Q Consensus 52 ~~~~~~~~~f~~~cg~~h~~~~~~~----~~~~~~~~~~~~~~k~~ta~~s~~ta~~l~~~~p~~~~~~--~~~ll~~~~ 125 (740)
+||+|+|..|++.-|..-.++.-+= -+++|-+ -.+-..-++..++.++.-+.+.+++-+++.+| ++.+....+
T Consensus 2 ~~vl~l~~ll~agi~~g~~~~~qqgyVlI~~~~~~i-e~Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rK 80 (400)
T COG3071 2 RRVLLLFVLLLAGIGVGLAIAGQQGYVLIQTDNYNI-EMSLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRK 80 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccCCceEEEecceee-eeeHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5889999999998888877665431 1222211 11112233444555555566777888889999 555655444
Q ss_pred HHH
Q 004636 126 AAE 128 (740)
Q Consensus 126 a~~ 128 (740)
-.+
T Consensus 81 rrr 83 (400)
T COG3071 81 RRR 83 (400)
T ss_pred HHH
Confidence 443
No 312
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.29 E-value=2e+02 Score=25.53 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=41.0
Q ss_pred cCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHH-CCCCeEEEEecCCCCCC-HHHHHHHHHH
Q 004636 619 DENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVV-SHEHQVVFMDVCVPGID-GYEVAVHIHD 679 (740)
Q Consensus 619 dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~-~~~~dlvl~D~~mp~~d-G~e~~~~Ir~ 679 (740)
|.++.....+..++++.|+++.... +.++..+.+ ..+||+|.+...+.... .++.+.++|+
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5666777888889999999998653 334444544 46899999988775432 3444445543
No 313
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=37.16 E-value=3.6e+02 Score=30.37 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=6.0
Q ss_pred CCCCHHHHHHH
Q 004636 716 KPVSLEKMRSV 726 (740)
Q Consensus 716 KP~~~~~L~~~ 726 (740)
.||+++.+..+
T Consensus 282 e~f~p~~~~~r 292 (429)
T TIGR01425 282 EIFKTQPFISK 292 (429)
T ss_pred CcCChHHHHHH
Confidence 46666665443
No 314
>PRK10963 hypothetical protein; Provisional
Probab=37.08 E-value=4.6e+02 Score=26.54 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHh----hhhhHHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEEEecC
Q 004636 122 LKNKAAELDREMG----LIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPT 185 (740)
Q Consensus 122 ~~~~a~~l~~e~~----~~~~~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~~~~~ 185 (740)
+.+++.+|+.+.. .+++.+.....+..++.++-++-|.+++..+.. .+.+.++++.+++++.+
T Consensus 49 LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~ 115 (223)
T PRK10963 49 QRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFP 115 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEec
Confidence 3445555555543 345555556777888999988999999998886 78999999988887754
No 315
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=36.79 E-value=2.2e+02 Score=31.72 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=60.8
Q ss_pred CceEEeecC-chHHHHHHHHHHHhcCCeEEEeCC--HHHHHHHHCC-CCeEEEEecCC-CCCCHHHHHHHHHHhhccCCC
Q 004636 612 GLKVLVMDE-NGVSRSVTKGLLLHLGCDVMTVSS--VEECFRVVSH-EHQVVFMDVCV-PGIDGYEVAVHIHDKFTRRHE 686 (740)
Q Consensus 612 ~~~ILIvdD-~~~~~~~l~~~L~~~g~~v~~a~~--g~eal~~~~~-~~dlvl~D~~m-p~~dG~e~~~~Ir~~~~~~~~ 686 (740)
|-+|++.+| -.-.+.....++++.|.++..+.+ ..+..+.+.. +.++|+++--- |-|.=.|+ +.|.+..+...
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI-~~i~~~A~~~g- 179 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDI-PAIARLAKAYG- 179 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccH-HHHHHHHHhcC-
Confidence 447888877 667788889999999999997764 4455666664 78999998422 33332222 23333332222
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
. ++++-..-..-..++-++.|||=++.
T Consensus 180 -~-~vvVDNTfatP~~q~PL~~GaDIVvh 206 (396)
T COG0626 180 -A-LVVVDNTFATPVLQRPLELGADIVVH 206 (396)
T ss_pred -C-EEEEECCcccccccChhhcCCCEEEE
Confidence 2 33343333333456778888886653
No 316
>PLN02591 tryptophan synthase
Probab=36.75 E-value=1.2e+02 Score=31.55 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHhhccCCCCceEEEEecCCC------HHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHH
Q 004636 669 DGYEVAVHIHDKFTRRHERPLIVALTGSTD------NLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 669 dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~------~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l 731 (740)
+.++.++++|+ . ...|+|++|-.+. +....+|.++|+|+.|.=...++|..+....+-
T Consensus 65 ~~~~~~~~~r~----~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAP----Q-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhc----C-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 35677777752 1 2345666765432 334667888999999998888887777666553
No 317
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.51 E-value=2.6e+02 Score=29.59 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=57.1
Q ss_pred eEEeecCchHHH----HHHHHHHHhcCC--e-EEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCC
Q 004636 614 KVLVMDENGVSR----SVTKGLLLHLGC--D-VMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHE 686 (740)
Q Consensus 614 ~ILIvdD~~~~~----~~l~~~L~~~g~--~-v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~ 686 (740)
.|||=|.+-... +.+.+.=++.++ . .+.+.|.+|+.+++...+|+|++|=+-| -++-+.+ +..+ .
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnmsp----e~l~~av-~~~~---~ 240 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNMSL----EQIEQAI-TLIA---G 240 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCCCH----HHHHHHH-HHhc---C
Confidence 467666554333 333333233342 2 3468999999999988899999995333 2222222 2211 1
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
. .++-.++.-+.+......+.|+|-..
T Consensus 241 ~-~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 241 R-SRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred c-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 2 35667888999999898999998643
No 318
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=36.19 E-value=1e+02 Score=30.69 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHhHhhhcCCCchHHHHHHHHHHHHHhhHHHHHHHHh
Q 004636 38 ELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWT 75 (740)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~ 75 (740)
+.+||..||..-+.+.++|-|+++++-...+-++..|-
T Consensus 127 ~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l 164 (194)
T PF11833_consen 127 ACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWL 164 (194)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35699988876678888999999988666666665554
No 319
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=36.15 E-value=5e+02 Score=27.47 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=12.7
Q ss_pred HHHHHHHhhcccchhHHHHHHHHhh
Q 004636 146 VRMLTHEIRSTLDRHTILKTTLVEL 170 (740)
Q Consensus 146 l~~lt~~i~~sld~~~il~t~~~~l 170 (740)
...+.+.+.+..|..+++.-.-+++
T Consensus 119 ~~r~~~~~~~~~d~~ell~L~e~~v 143 (289)
T TIGR01620 119 RAAWKETENEVIDGPELIELAEREV 143 (289)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHh
Confidence 3444555555555555555444433
No 320
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=36.05 E-value=4e+02 Score=26.98 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=61.8
Q ss_pred ecCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHHCCCCeEEEEecCCCCCCHHH----HHHHH---HHhhccCCCC
Q 004636 618 MDENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVVSHEHQVVFMDVCVPGIDGYE----VAVHI---HDKFTRRHER 687 (740)
Q Consensus 618 vdD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~~~~~dlvl~D~~mp~~dG~e----~~~~I---r~~~~~~~~~ 687 (740)
+|+.+..-+.+ +.+++.|+..-.+= +.-++++-+-...|+|++=-.=|+..|-. .+.+| |+..... .
T Consensus 92 ~E~~~~~~r~i-~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~-~- 168 (220)
T COG0036 92 AEATEHIHRTI-QLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDER-L- 168 (220)
T ss_pred eccCcCHHHHH-HHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhccc-C-
Confidence 56555554444 56677898876653 34566665545678766533348888843 33444 3333221 1
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCeEEEC
Q 004636 688 PLIVALTGSTDNLTKDNCMRVGMDGVILK 716 (740)
Q Consensus 688 ~~II~lt~~~~~~~~~~~l~~Ga~~~i~K 716 (740)
...|-+-+..+.+....+.++|||-|+.=
T Consensus 169 ~~~IeVDGGI~~~t~~~~~~AGad~~VaG 197 (220)
T COG0036 169 DILIEVDGGINLETIKQLAAAGADVFVAG 197 (220)
T ss_pred CeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence 55777889999999999999999987653
No 321
>PLN02823 spermine synthase
Probab=36.02 E-value=1.5e+02 Score=32.16 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=38.9
Q ss_pred eEEeecCchHHHHHHHHHHHhc-----CCeEE-EeCCHHHHHHHHCCCCeEEEEecCCC
Q 004636 614 KVLVMDENGVSRSVTKGLLLHL-----GCDVM-TVSSVEECFRVVSHEHQVVFMDVCVP 666 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~-----g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp 666 (740)
+|-+||=|+.+.+..++.+... +-++. ...||.+.++...+.+|+||+|..-|
T Consensus 129 ~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 129 KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADP 187 (336)
T ss_pred eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCc
Confidence 6899999999999999887532 12233 55777777765456899999997544
No 322
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.00 E-value=5e+02 Score=28.83 Aligned_cols=105 Identities=10% Similarity=0.157 Sum_probs=57.4
Q ss_pred eEEeecCch---HHHHHHHHHHHhcCCeEEEeCCHHHHHHHHC--CCCeEEEEecC-CCCCCHHHHHHHHHHhhccCCCC
Q 004636 614 KVLVMDENG---VSRSVTKGLLLHLGCDVMTVSSVEECFRVVS--HEHQVVFMDVC-VPGIDGYEVAVHIHDKFTRRHER 687 (740)
Q Consensus 614 ~ILIvdD~~---~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~--~~~dlvl~D~~-mp~~dG~e~~~~Ir~~~~~~~~~ 687 (740)
+|.+++-|. .....++.+-+..|..+..+.+..+..+.+. ..+|+||+|-- ....|-.. +.++++......+.
T Consensus 208 ~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~~~~ 286 (388)
T PRK12723 208 NIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMK-LAEMKELLNACGRD 286 (388)
T ss_pred eEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCCCCEEEEcCCCCCccCHHH-HHHHHHHHHhcCCC
Confidence 455554443 2233355555556777777777666544442 46899999953 12234333 44444443322222
Q ss_pred -ceEEEEecCCCHHHHHHHHH----cCCCeEEECCCC
Q 004636 688 -PLIVALTGSTDNLTKDNCMR----VGMDGVILKPVS 719 (740)
Q Consensus 688 -~~II~lt~~~~~~~~~~~l~----~Ga~~~i~KP~~ 719 (740)
-.++++++.....+..+.++ .|.+++|.--+|
T Consensus 287 ~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 287 AEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 24677788777666655443 467776654333
No 323
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.96 E-value=3.8e+02 Score=25.24 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=3.9
Q ss_pred HHHHHhcccc
Q 004636 70 LINLWTFNMH 79 (740)
Q Consensus 70 ~~~~~~~~~~ 79 (740)
+.+..+||.|
T Consensus 94 ~~G~~~f~~P 103 (144)
T cd08766 94 LFGFVTFWFP 103 (144)
T ss_pred HHHHHHHHcC
Confidence 3333334443
No 324
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.29 E-value=4.8e+02 Score=26.24 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhhhh----HHHhhHHHHHHHHHhhcccchhHHHHHHHHhhhcccccceeEE
Q 004636 122 LKNKAAELDREMGLIRT----QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECAL 181 (740)
Q Consensus 122 ~~~~a~~l~~e~~~~~~----~~~~~~~l~~lt~~i~~sld~~~il~t~~~~l~~~l~~~~~~~ 181 (740)
..+...+|+++...+.. .+..-..+..++..+-++-+.++.+++.....++-|++....+
T Consensus 50 ~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l 113 (218)
T COG3159 50 LRNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASL 113 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEE
Confidence 44455566666554433 3344455678899999999999999999988999999985544
No 325
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=35.11 E-value=1.6e+02 Score=30.08 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 670 GYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 670 G~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.++.++++++.. +..|||...+-.+.++..++++.|||++..
T Consensus 178 ~~~~I~~i~~~~----~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 178 DMDLLKILSEEF----NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred hHHHHHHHHHhc----CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 378888876432 236799888888999999999999998764
No 326
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=34.82 E-value=97 Score=30.53 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=39.0
Q ss_pred eEEeecCchHHHHHHHHHHHhcCC--eEE-EeCCHHHHHHHHCCC--CeEEEEecCC
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGC--DVM-TVSSVEECFRVVSHE--HQVVFMDVCV 665 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~~~~~--~dlvl~D~~m 665 (740)
+++.||-|......+++-++.+|+ ++. ...|...++..+... ||+|++|---
T Consensus 68 ~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 68 RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPY 124 (187)
T ss_pred eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCC
Confidence 688999999999999998888773 333 445556777766544 8999999733
No 327
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=34.32 E-value=69 Score=30.73 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=43.3
Q ss_pred CCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCC
Q 004636 609 NFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGI 668 (740)
Q Consensus 609 ~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~ 668 (740)
++.|.+++||-.....-.-+..+|.+.|..|..+.+-.+-++....+.|+|+.-..-|++
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNL 92 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeeccccc
Confidence 467889999999999999999999999999998866543344344567999999988876
No 328
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=34.30 E-value=2.8e+02 Score=28.14 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=54.8
Q ss_pred HHHhcCCeE--EEeCCHHHHHHHHCCCCeEE--EE-ecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHH
Q 004636 631 LLLHLGCDV--MTVSSVEECFRVVSHEHQVV--FM-DVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNC 705 (740)
Q Consensus 631 ~L~~~g~~v--~~a~~g~eal~~~~~~~dlv--l~-D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~ 705 (740)
.|+..|..+ +.+-+..+|+.......+.| ++ -+.=-+.||.+++++|++.+...+..+.|++ .+.-+.....++
T Consensus 100 ~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~a 178 (222)
T PRK12656 100 TLKAEGYHITATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILA-ASFKNVAQVNKA 178 (222)
T ss_pred HHHHCCCceEEeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEE-EecCCHHHHHHH
Confidence 456668654 46788888887765333321 11 1111367999999998887766566666664 555677778899
Q ss_pred HHcCCCeE
Q 004636 706 MRVGMDGV 713 (740)
Q Consensus 706 l~~Ga~~~ 713 (740)
..+|++..
T Consensus 179 ~~~G~d~v 186 (222)
T PRK12656 179 FALGAQAV 186 (222)
T ss_pred HHcCCCEE
Confidence 99999864
No 329
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=34.16 E-value=1.4e+02 Score=30.94 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=7.8
Q ss_pred CchHHHHHHHHHHH
Q 004636 620 ENGVSRSVTKGLLL 633 (740)
Q Consensus 620 D~~~~~~~l~~~L~ 633 (740)
|-|..++.-.+.|+
T Consensus 53 DGpvIq~a~~~al~ 66 (256)
T TIGR00262 53 DGPTIQAADLRALR 66 (256)
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555555554
No 330
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=34.16 E-value=2.2e+02 Score=28.83 Aligned_cols=84 Identities=11% Similarity=0.201 Sum_probs=54.2
Q ss_pred HHHHhcCCeE--EEeCCHHHHHHHHCCCCeEE--EEe-cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHH
Q 004636 630 GLLLHLGCDV--MTVSSVEECFRVVSHEHQVV--FMD-VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDN 704 (740)
Q Consensus 630 ~~L~~~g~~v--~~a~~g~eal~~~~~~~dlv--l~D-~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~ 704 (740)
+.|+..|..+ +.+-+..+|+.......+.| ++. +.=-+.||+++++++++..+..+..+.|++ .+.-+..+..+
T Consensus 97 ~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~ 175 (220)
T PRK12653 97 KMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALD 175 (220)
T ss_pred HHHHHcCCCeeEEEecCHHHHHHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHH
Confidence 3466667654 46778888876554333321 111 111367999999999888765556666664 44456667778
Q ss_pred HHHcCCCeEE
Q 004636 705 CMRVGMDGVI 714 (740)
Q Consensus 705 ~l~~Ga~~~i 714 (740)
++.+|+|-+-
T Consensus 176 ~~~~G~d~vT 185 (220)
T PRK12653 176 CLLAGCESIT 185 (220)
T ss_pred HHHcCCCEEE
Confidence 8899999653
No 331
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=33.84 E-value=2.4e+02 Score=28.66 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=53.7
Q ss_pred HHHHhcCCeE--EEeCCHHHHHHHHCCCCeEE--EEe-cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHH
Q 004636 630 GLLLHLGCDV--MTVSSVEECFRVVSHEHQVV--FMD-VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDN 704 (740)
Q Consensus 630 ~~L~~~g~~v--~~a~~g~eal~~~~~~~dlv--l~D-~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~ 704 (740)
+.|+..|..+ +.+-+..+|+.......+.| ++. +.--+.||+++++++++..+..+..+.|++ .+.-+.....+
T Consensus 97 ~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~ 175 (220)
T PRK12655 97 KKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALD 175 (220)
T ss_pred HHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHH
Confidence 3466678654 46778888876554333321 111 112367999999999887765555666664 44456677778
Q ss_pred HHHcCCCeE
Q 004636 705 CMRVGMDGV 713 (740)
Q Consensus 705 ~l~~Ga~~~ 713 (740)
++.+|++-+
T Consensus 176 ~~~~G~d~v 184 (220)
T PRK12655 176 CLLAGCQSI 184 (220)
T ss_pred HHHcCCCEE
Confidence 889999964
No 332
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=33.67 E-value=1.7e+02 Score=29.68 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=24.1
Q ss_pred HhhHhHHHHhHhhhcCCCchHHHHHHHHHHHHHhh
Q 004636 32 YFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCG 66 (740)
Q Consensus 32 y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg 66 (740)
++.+|+.++++.|||...-++..++=..+|++.-.
T Consensus 2 ~~~~pi~l~~~~rk~~~~~~~~f~~Ga~~F~v~~~ 36 (223)
T PF10086_consen 2 SILLPILLFIYFRKRKKISWKPFILGALVFFVFAQ 36 (223)
T ss_pred eehHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 36789999998998876655555555555665444
No 333
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=33.63 E-value=3.6e+02 Score=27.40 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred HHHhcCCeEEEe----------CCHHHHHHHHC-CCCeEEEEecCCCC----------CCHHHHHHHHHHhhccCCCCce
Q 004636 631 LLLHLGCDVMTV----------SSVEECFRVVS-HEHQVVFMDVCVPG----------IDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 631 ~L~~~g~~v~~a----------~~g~eal~~~~-~~~dlvl~D~~mp~----------~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
+|++.|.+|+.- ..-.+|++++. .++|.++++.-||- -+--|.++-++.. +..-+.|.
T Consensus 144 ~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~A-R~~f~~pv 222 (275)
T COG1856 144 LLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYA-RKKFPNPV 222 (275)
T ss_pred HHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHH-HHhCCCCe
Confidence 455667665421 23457899886 67899999998873 2445666655432 22344554
Q ss_pred EEEEecCCCHHH----HHHHHHcCCCeEEECCCC
Q 004636 690 IVALTGSTDNLT----KDNCMRVGMDGVILKPVS 719 (740)
Q Consensus 690 II~lt~~~~~~~----~~~~l~~Ga~~~i~KP~~ 719 (740)
+|- .+...-+. ...+..+|+|. |++|.+
T Consensus 223 ~iG-CmrP~Ge~rvk~d~~av~~gVd~-It~P~~ 254 (275)
T COG1856 223 SIG-CMRPRGEWRVKLDKEAVLAGVDR-ITFPPR 254 (275)
T ss_pred eEe-ecCcCchhHHHHHHHHHHcCCce-eecCCc
Confidence 443 33332222 33456678875 888865
No 334
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=33.54 E-value=1.7e+02 Score=32.51 Aligned_cols=113 Identities=10% Similarity=0.022 Sum_probs=59.3
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEE---------------EeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHH
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVM---------------TVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVH 676 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~---------------~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~ 676 (740)
+.+++||-|.+.-...+.+.+++.|.... ......+.-..+ ...|++++--...+.-|..+++.
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y-~~aDi~~v~~S~~e~~g~~~lEA 340 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLY-AIADIAFVGGSLVKRGGHNPLEP 340 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHH-HhCCEEEECCCcCCCCCCCHHHH
Confidence 45788888877654567777787776432 222222322222 23588666322211123333322
Q ss_pred HHHhhccCCCCceEEEEecC-CCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 677 IHDKFTRRHERPLIVALTGS-TDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 677 Ir~~~~~~~~~~~II~lt~~-~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
+ . ...|||+ +.+ ....+..+.+. ..+++..|-+.++|.+.+..++..+.
T Consensus 341 m------a-~G~PVI~-g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~~~~ 390 (425)
T PRK05749 341 A------A-FGVPVIS-GPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLTDPD 390 (425)
T ss_pred H------H-hCCCEEE-CCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhcCHH
Confidence 2 1 1234663 433 22222222221 23466678899999999999887543
No 335
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=33.36 E-value=2e+02 Score=28.68 Aligned_cols=88 Identities=9% Similarity=0.072 Sum_probs=45.1
Q ss_pred HHHhcCCe-EEEeCCHHHHHHHH----CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHH
Q 004636 631 LLLHLGCD-VMTVSSVEECFRVV----SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNC 705 (740)
Q Consensus 631 ~L~~~g~~-v~~a~~g~eal~~~----~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~ 705 (740)
.|++.+.- |....+.+++.+.. ..... ++.+.|-.-+++++++++++.+ +.. +|-...-.+.++..++
T Consensus 4 ~l~~~~iiaVir~~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~~----p~~-~vGAGTV~~~e~a~~a 76 (196)
T PF01081_consen 4 RLKENKIIAVIRGDDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKEF----PDL-LVGAGTVLTAEQAEAA 76 (196)
T ss_dssp HHHHHSEEEEETTSSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHHH----TTS-EEEEES--SHHHHHHH
T ss_pred HHhhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHHC----CCC-eeEEEeccCHHHHHHH
Confidence 34444432 22344555555433 22333 3344455557788888887543 232 4555556677888888
Q ss_pred HHcCCCeEEECCCCHHHHHHH
Q 004636 706 MRVGMDGVILKPVSLEKMRSV 726 (740)
Q Consensus 706 l~~Ga~~~i~KP~~~~~L~~~ 726 (740)
.++||+-.++ |.--+++.+.
T Consensus 77 ~~aGA~FivS-P~~~~~v~~~ 96 (196)
T PF01081_consen 77 IAAGAQFIVS-PGFDPEVIEY 96 (196)
T ss_dssp HHHT-SEEEE-SS--HHHHHH
T ss_pred HHcCCCEEEC-CCCCHHHHHH
Confidence 9999985444 5544444443
No 336
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=5e+02 Score=27.38 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred hHHHHHHHHH-HHHHhhHHHHHHHHhcccc
Q 004636 51 YRWVLVQFGA-FIVLCGATHLINLWTFNMH 79 (740)
Q Consensus 51 ~~~~~~~~~~-f~~~cg~~h~~~~~~~~~~ 79 (740)
+...|.++++ |++.==.|-.+++.|+|++
T Consensus 246 ~~k~fslwa~vF~l~Rl~tliiaVlt~gfg 275 (374)
T KOG1608|consen 246 YQKLFSLWAAVFVLGRLGTLIIAVLTVGFG 275 (374)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566666665 6666667778899999864
No 337
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=33.15 E-value=1.6e+02 Score=31.30 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=48.3
Q ss_pred eEEeecCchHHHHHHHHHHHhc--CCe---EE-EeCCHHHHHHHH-CCCCeEEEEecCCCCCCHHHHHH
Q 004636 614 KVLVMDENGVSRSVTKGLLLHL--GCD---VM-TVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAV 675 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~--g~~---v~-~a~~g~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~ 675 (740)
.|+++|-|....++=++++... ||+ |. ...||...++.. .+.+|+|++|..=|.+.+..+-+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHH
Confidence 5899999998888888888754 442 33 456888888887 56789999999999998866553
No 338
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.10 E-value=1.3e+02 Score=31.81 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=46.2
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
+.++|.+|+.+++...+|+|++|=+-| -++.+.+ +..+ .. .++-.++.-+.+...+..+.|+|-.-
T Consensus 210 VEvetleea~eA~~aGaDiImLDnmsp----e~l~~av-~~~~---~~-~~lEaSGGIt~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 210 IEVETLAQLETALAHGAQSVLLDNFTL----DMMREAV-RVTA---GR-AVLEVSGGVNFDTVRAFAETGVDRIS 275 (294)
T ss_pred EEcCCHHHHHHHHHcCCCEEEECCCCH----HHHHHHH-Hhhc---CC-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 478899999999988999999995333 2222222 2211 22 35667888899988888899998543
No 339
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=32.70 E-value=3e+02 Score=28.56 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=54.1
Q ss_pred HHHHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEecCCCCCCH----HHHHHHHHHhhccCCCCceEEEEecCCCHHHHH
Q 004636 629 KGLLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMDVCVPGIDG----YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKD 703 (740)
Q Consensus 629 ~~~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~dG----~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~ 703 (740)
...-+.+|.++. .+.|.+|+-.++....++| .++=-+... ++.+.++.... .....+|.-|+-.+.++..
T Consensus 149 ~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI--GINnRdL~tf~vdl~~t~~la~~~---p~~~~~IsESGI~~~~dv~ 223 (254)
T COG0134 149 VDRAHELGMEVLVEVHNEEELERALKLGAKII--GINNRDLTTLEVDLETTEKLAPLI---PKDVILISESGISTPEDVR 223 (254)
T ss_pred HHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE--EEeCCCcchheecHHHHHHHHhhC---CCCcEEEecCCCCCHHHHH
Confidence 344456899887 6889988877776555554 222222222 44455553322 2334567778888999999
Q ss_pred HHHHcCCCeEEE
Q 004636 704 NCMRVGMDGVIL 715 (740)
Q Consensus 704 ~~l~~Ga~~~i~ 715 (740)
+..+.|+|+|+.
T Consensus 224 ~l~~~ga~a~LV 235 (254)
T COG0134 224 RLAKAGADAFLV 235 (254)
T ss_pred HHHHcCCCEEEe
Confidence 999999999986
No 340
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=32.57 E-value=3.8e+02 Score=27.44 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=45.7
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCC--eEE-EeCCHHHHHHHHCCCCeEEEEecCCCCC-CHHHHHHHHHHhh
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGC--DVM-TVSSVEECFRVVSHEHQVVFMDVCVPGI-DGYEVAVHIHDKF 681 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~-dG~e~~~~Ir~~~ 681 (740)
+.+|..+|-++.+.+..++.+...|. ++. ...+..+........+|+|++...+.-+ |-.++++++.+..
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~L 139 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVL 139 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHc
Confidence 34789999999999988888877664 233 3445555333345678999987654322 3456666765544
No 341
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=32.50 E-value=3.4e+02 Score=29.57 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=58.2
Q ss_pred ceEEeecCchHHHHHHHHHHHhc-CCeEEE-eCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHL-GCDVMT-VSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~-g~~v~~-a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
+||.||-- ..-+..+..+.+.. +++++. ++...+..+.+...+++ |..+.++-+ . ......+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi-------~~y~~~eel------l--~d~Di~~ 67 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGV-------PLYCEVEEL------P--DDIDIAC 67 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCC-------CccCCHHHH------h--cCCCEEE
Confidence 57888876 44444443333323 577763 33333433333333331 111222211 1 1234434
Q ss_pred EEEe----cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 691 VALT----GSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 691 I~lt----~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
|.+. .....+...+|+++|..=+..||+..+|..+.++.+-++
T Consensus 68 V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 68 VVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred EEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 4431 235577888999999999999999988887777665443
No 342
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=32.22 E-value=1.6e+02 Score=31.77 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=43.2
Q ss_pred HHHHHHHCC--CCeEEEEecCCCCCCH-HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 646 EECFRVVSH--EHQVVFMDVCVPGIDG-YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 646 ~eal~~~~~--~~dlvl~D~~mp~~dG-~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
+++.+++.. .+|+|.+|..-+..+. .+++++||+ ..+.++||+ ..-.+.+....+.++|+|...
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~----~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK----HLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh----hCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 455556655 4599999998865433 566777764 334455664 223467788899999999965
No 343
>PRK10742 putative methyltransferase; Provisional
Probab=32.11 E-value=3e+02 Score=28.53 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=43.7
Q ss_pred CCceEEeecCchHHHHHHHHHHHhc------CC----eEE-EeCCHHHHHHHHCCCCeEEEEecCCCCCC
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHL------GC----DVM-TVSSVEECFRVVSHEHQVVFMDVCVPGID 669 (740)
Q Consensus 611 ~~~~ILIvdD~~~~~~~l~~~L~~~------g~----~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~d 669 (740)
.|.+|..||-++.....++.-|++. +. ++. ...|..+.+......||+|.+|-+-|.-.
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCCc
Confidence 3567999999999999999999874 21 222 34566666665555799999999888643
No 344
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=32.03 E-value=4.3e+02 Score=28.24 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=21.1
Q ss_pred HhhHHHHHHHHHhhcccchhHHHHHHHHhhh
Q 004636 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELG 171 (740)
Q Consensus 141 ~~~~~l~~lt~~i~~sld~~~il~t~~~~l~ 171 (740)
+--..+..+.+.+++.....+-++.+..|..
T Consensus 137 qlP~aLdlivr~l~aG~~l~dAl~~~~~e~~ 167 (309)
T COG4965 137 QLPEALDLIVRALRAGAPLPDALRLAAKETP 167 (309)
T ss_pred HhhHHHHHHHHHhhCCCCHHHHHHHHHhhCC
Confidence 3345577788888888877777766665543
No 345
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=31.82 E-value=2.3e+02 Score=31.12 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.4
Q ss_pred CceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
..|||+-.+-.+..+..+++.+|||.+..
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeee
Confidence 46799888889999999999999999764
No 346
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=31.82 E-value=3.6e+02 Score=28.58 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCeEE--EeCCHHHHHHHHCCCCeEEEEecCC-----CCCCHHHHHHHHHHhhccCCCCceEEEEecCCC
Q 004636 626 SVTKGLLLHLGCDVM--TVSSVEECFRVVSHEHQVVFMDVCV-----PGIDGYEVAVHIHDKFTRRHERPLIVALTGSTD 698 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~--~a~~g~eal~~~~~~~dlvl~D~~m-----p~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~ 698 (740)
+.++.+-+..+.-+. .+.+.++|..+.....|.|.+.-+- .+...++++.++++.. .+..|||+-.+-.+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~~~ipvia~GGI~~ 238 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV---GGRIEVLLDGGIRR 238 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh---cCCCeEEEeCCCCC
Confidence 344444444444333 3467777777777777777664321 1234577777776533 22467998888899
Q ss_pred HHHHHHHHHcCCCeEEE
Q 004636 699 NLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 699 ~~~~~~~l~~Ga~~~i~ 715 (740)
..+..+++..||+.+..
T Consensus 239 ~~d~~kal~lGAd~V~i 255 (299)
T cd02809 239 GTDVLKALALGADAVLI 255 (299)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999998654
No 347
>PRK03612 spermidine synthase; Provisional
Probab=31.70 E-value=2.5e+02 Score=32.47 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=45.2
Q ss_pred eEEeecCchHHHHHHHH--HHHhcC------CeEE-EeCCHHHHHHHHCCCCeEEEEecCCCCCCH------HHHHHHHH
Q 004636 614 KVLVMDENGVSRSVTKG--LLLHLG------CDVM-TVSSVEECFRVVSHEHQVVFMDVCVPGIDG------YEVAVHIH 678 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~--~L~~~g------~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~dG------~e~~~~Ir 678 (740)
+|..||=|+.+.+..++ .+.+.+ -++. ...|+.+.++...++||+|++|..-|...+ -|+.+.++
T Consensus 323 ~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~ 402 (521)
T PRK03612 323 QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLK 402 (521)
T ss_pred eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHH
Confidence 78999999999998887 333211 1233 456777766655568999999976554322 25666666
Q ss_pred Hhhc
Q 004636 679 DKFT 682 (740)
Q Consensus 679 ~~~~ 682 (740)
+..+
T Consensus 403 ~~L~ 406 (521)
T PRK03612 403 RRLA 406 (521)
T ss_pred HhcC
Confidence 5543
No 348
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=31.67 E-value=4.5e+02 Score=28.34 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=58.7
Q ss_pred CceEEeecC----chHHHHHHHHHHHhcC--CeEE--EeCCHHHHHHHHCCCCeEEEEecCCCCC------------CHH
Q 004636 612 GLKVLVMDE----NGVSRSVTKGLLLHLG--CDVM--TVSSVEECFRVVSHEHQVVFMDVCVPGI------------DGY 671 (740)
Q Consensus 612 ~~~ILIvdD----~~~~~~~l~~~L~~~g--~~v~--~a~~g~eal~~~~~~~dlvl~D~~mp~~------------dG~ 671 (740)
+..++++|- .+...+.++. +++.+ ..+. .+.+.++|..+.....|.|.+.+ -|+. .-+
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~-ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~-g~G~~~~t~~~~g~g~p~~ 183 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKF-IKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGI-GPGSICTTRIVTGVGVPQA 183 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH-HHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECC-CCCcCcccceeCCCCCCHH
Confidence 446666652 2333344443 33333 4443 35677888887777788887642 1211 123
Q ss_pred HHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 672 EVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 672 e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.++..+.+... ....|||+-.+-.+..+..+++..||+.+..
T Consensus 184 ~~i~~v~~~~~--~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 184 TAVADVAAAAR--DYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 34444433221 1235688766777889999999999999876
No 349
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=31.52 E-value=3e+02 Score=25.37 Aligned_cols=70 Identities=11% Similarity=0.338 Sum_probs=41.5
Q ss_pred HHhHhhhcCCCc--hHHHHHHHHHHHHHhhHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004636 39 LIYFVKKSAVFP--YRWVLVQFGAFIVLCGATHLINLWTFNMH--SRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLS 114 (740)
Q Consensus 39 ~~~~~~~~~~~~--~~~~~~~~~~f~~~cg~~h~~~~~~~~~~--~~~~~~~~~~~k~~ta~~s~~ta~~l~~~~p~~~~ 114 (740)
-.|.+|--.-+| +-.+++++|.|-+.-|.. .|.=|.. ..|+.. +..+++.+.+++=|.+.+.++||+..
T Consensus 23 ~~YMlRE~T~v~~~~f~l~Ll~Gl~~L~~G~~----aw~~~~~fl~nP~vv---~lnliaLaa~L~Ha~TwF~l~Pkam~ 95 (129)
T PF02300_consen 23 RFYMLREGTSVPVAWFSLVLLYGLFALGQGPE----AWQGWLAFLQNPIVV---ILNLIALAAALLHAKTWFELAPKAMP 95 (129)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHTHHH----HHHHHHHHHTSHHHH---HHHHHHHHHHHHHHHHHHHHGGGG--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHccCHH----HHHHHHHHHcCcHHH---HHHHHHHHHHHHHHHHHHHHchhhhh
Confidence 445555444443 333455566666555543 2333221 124443 45999999999999999999999997
Q ss_pred c
Q 004636 115 V 115 (740)
Q Consensus 115 ~ 115 (740)
+
T Consensus 96 i 96 (129)
T PF02300_consen 96 I 96 (129)
T ss_dssp -
T ss_pred h
Confidence 5
No 350
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=31.33 E-value=1.4e+02 Score=29.95 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=46.4
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCC--eEE-EeCCHHHHHHHH-C----CCCeEEEEecCCCCCCHHHHHHHHHHh
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGC--DVM-TVSSVEECFRVV-S----HEHQVVFMDVCVPGIDGYEVAVHIHDK 680 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~~-~----~~~dlvl~D~~mp~~dG~e~~~~Ir~~ 680 (740)
.+|.-+|-|+...+..+..+++.|+ .+. ...++.+.+..+ . ..||+||+|-.- -+-.+....+.+.
T Consensus 71 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~~~~~~l 144 (205)
T PF01596_consen 71 GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYFEKALPL 144 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHHHHHHHH
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHHHHHhhh
Confidence 4799999999999999999998886 344 557788877754 2 258999999853 2344444444333
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=31.09 E-value=1.7e+02 Score=28.90 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCeEEEeCC---HH----HHHHHH-CCCCeEEEEecCCCCCC--HHHHHHHHHHhhccCCCCceEEE
Q 004636 623 VSRSVTKGLLLHLGCDVMTVSS---VE----ECFRVV-SHEHQVVFMDVCVPGID--GYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 623 ~~~~~l~~~L~~~g~~v~~a~~---g~----eal~~~-~~~~dlvl~D~~mp~~d--G~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
.-.+.++.+-+..|..+..+.+ .. ++++.. .+.+|+||+|- |+.+ -.+..+++++......+.-.+++
T Consensus 43 ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT--~Gr~~~d~~~~~el~~~~~~~~~~~~~LV 120 (196)
T PF00448_consen 43 GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDT--AGRSPRDEELLEELKKLLEALNPDEVHLV 120 (196)
T ss_dssp HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE---SSSSTHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEec--CCcchhhHHHHHHHHHHhhhcCCccceEE
Confidence 3456677777788888777653 22 233333 25689999997 4432 24455666544433334445667
Q ss_pred EecCCCHHHHHHHH---H-cCCCeEEECCCC
Q 004636 693 LTGSTDNLTKDNCM---R-VGMDGVILKPVS 719 (740)
Q Consensus 693 lt~~~~~~~~~~~l---~-~Ga~~~i~KP~~ 719 (740)
+++....+...... + .|.++.|.--+|
T Consensus 121 lsa~~~~~~~~~~~~~~~~~~~~~lIlTKlD 151 (196)
T PF00448_consen 121 LSATMGQEDLEQALAFYEAFGIDGLILTKLD 151 (196)
T ss_dssp EEGGGGGHHHHHHHHHHHHSSTCEEEEESTT
T ss_pred EecccChHHHHHHHHHhhcccCceEEEEeec
Confidence 77776666543332 3 367776643333
No 352
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=30.95 E-value=3.1e+02 Score=27.97 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHhcCCeEEEeC--CHHHHHHHHCCCCeEEEEecCCCCCCHH-----HHHHHHHHhhccCCCCceEEEE
Q 004636 621 NGVSRSVTKGLLLHLGCDVMTVS--SVEECFRVVSHEHQVVFMDVCVPGIDGY-----EVAVHIHDKFTRRHERPLIVAL 693 (740)
Q Consensus 621 ~~~~~~~l~~~L~~~g~~v~~a~--~g~eal~~~~~~~dlvl~D~~mp~~dG~-----e~~~~Ir~~~~~~~~~~~II~l 693 (740)
.-...+.. +.|-+.||.|.... |.--|-++..-. -..+|=+.-|..+|. ..++.|++. ...|||+=
T Consensus 116 ~~etl~Aa-e~Lv~eGF~VlPY~~dD~v~arrLee~G-caavMPl~aPIGSg~G~~n~~~l~iiie~-----a~VPviVD 188 (262)
T COG2022 116 PIETLKAA-EQLVKEGFVVLPYTTDDPVLARRLEEAG-CAAVMPLGAPIGSGLGLQNPYNLEIIIEE-----ADVPVIVD 188 (262)
T ss_pred hHHHHHHH-HHHHhCCCEEeeccCCCHHHHHHHHhcC-ceEeccccccccCCcCcCCHHHHHHHHHh-----CCCCEEEe
Confidence 33344444 44556799988544 333333333222 336677777766553 344445432 25678877
Q ss_pred ecCCCHHHHHHHHHcCCCeEEE
Q 004636 694 TGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 694 t~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.+-..+++...+++.|+|+++.
T Consensus 189 AGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 189 AGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred CCCCChhHHHHHHhcccceeeh
Confidence 8889999999999999999986
No 353
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.85 E-value=1.7e+02 Score=30.44 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhccCCCCceEEEEecC------CCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 670 GYEVAVHIHDKFTRRHERPLIVALTGS------TDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 670 G~e~~~~Ir~~~~~~~~~~~II~lt~~------~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
.++.++++|+. ....|++++|-. ..+....+|.++|+|+.|.=...+++..+.+...
T Consensus 76 ~~~~~~~~r~~----~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREK----DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhc----CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 45666666521 223455556643 2233466777788888887666676666555444
No 354
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=30.59 E-value=58 Score=32.29 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=36.0
Q ss_pred EEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEe
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMD 662 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D 662 (740)
|||||.+...-.-+...|++.|+++.+..+.+...+.+ ...||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEEC
Confidence 89999999999999999999999998876653323323 3467776663
No 355
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=30.52 E-value=3.4e+02 Score=26.34 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=56.2
Q ss_pred hHHhhhhhHHHHHHHhhHhHHHHhHhhhcC----CCc------hHHHHHHHHHHHHHhhHHHHHHHHhcccchhHHHHHH
Q 004636 18 MKYQYISDFFIALAYFSIPLELIYFVKKSA----VFP------YRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVM 87 (740)
Q Consensus 18 ~~~~~~sd~~i~~~y~~i~~~~~~~~~~~~----~~~------~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~ 87 (740)
...|.-+|.+..+-|+.+.+.-+|..+|++ +.+ -.|++.+.++.+...+.+-++.-++- + +.-|
T Consensus 41 ~~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~-- 114 (181)
T PF04973_consen 41 YQAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLTD---S-PFPW-- 114 (181)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---C-chHH--
Confidence 356788999999999999988888777532 333 34677777777777787777776661 1 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004636 88 TTAKVLTAVVSCATALMLVH 107 (740)
Q Consensus 88 ~~~k~~ta~~s~~ta~~l~~ 107 (740)
..++|...|+...+++.+
T Consensus 115 --~Da~~~~~siva~~l~~~ 132 (181)
T PF04973_consen 115 --LDALTTVLSIVAQWLMAR 132 (181)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 267777777777666554
No 356
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=30.37 E-value=1.3e+02 Score=29.61 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=48.2
Q ss_pred CCeEEEeCCHHHHHHHHCCCCeEEEEecCC---CCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCe
Q 004636 636 GCDVMTVSSVEECFRVVSHEHQVVFMDVCV---PGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDG 712 (740)
Q Consensus 636 g~~v~~a~~g~eal~~~~~~~dlvl~D~~m---p~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~ 712 (740)
++.|...++-+|+.+++....|+|=+|-.. | .+--+++++||+.+ .+++..-...++...|.++|+|
T Consensus 45 ~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l~~li~~i~~~~--------~l~MADist~ee~~~A~~~G~D- 114 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAGADIIALDATDRPRP-ETLEELIREIKEKY--------QLVMADISTLEEAINAAELGFD- 114 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-HHHHHHHHHHCT--------SEEEEE-SSHHHHHHHHHTT-S-
T ss_pred CCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCHHHHHHHHHHhC--------cEEeeecCCHHHHHHHHHcCCC-
Confidence 567888899999999888889999999766 5 77788888887532 2345666788888999999987
Q ss_pred EEE
Q 004636 713 VIL 715 (740)
Q Consensus 713 ~i~ 715 (740)
++.
T Consensus 115 ~I~ 117 (192)
T PF04131_consen 115 IIG 117 (192)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 357
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.15 E-value=2.1e+02 Score=29.27 Aligned_cols=54 Identities=13% Similarity=0.308 Sum_probs=41.1
Q ss_pred eEEEEecCCCCC-CH--HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 657 QVVFMDVCVPGI-DG--YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 657 dlvl~D~~mp~~-dG--~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.++++|+..-++ .| +++++++++. ...||++-.+-.+.++..++++.|+++.+.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~-----~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKA-----TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 799999976543 33 6677777532 235688778888889999999999999876
No 358
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.11 E-value=2.2e+02 Score=27.92 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=46.8
Q ss_pred eCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeE
Q 004636 642 VSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGV 713 (740)
Q Consensus 642 a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~ 713 (740)
+.+..|+.+..+...|.|=+ .--+.+-|.+.++.+++. .+..|+++ ++.-+.+.....+++|++++
T Consensus 112 ~~t~~e~~~A~~~Gadyv~~-Fpt~~~~G~~~l~~~~~~----~~~ipvva-iGGI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 112 ALTPTEIVTAWQAGASCVKV-FPVQAVGGADYIKSLQGP----LGHIPLIP-TGGVTLENAQAFIQAGAIAV 177 (187)
T ss_pred cCCHHHHHHHHHCCCCEEEE-CcCCcccCHHHHHHHHhh----CCCCcEEE-eCCCCHHHHHHHHHCCCeEE
Confidence 67888888887777787765 222224588999888642 23467876 55567788889999999875
No 359
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=29.71 E-value=3.4e+02 Score=28.15 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEe---cCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHH
Q 004636 627 VTKGLLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMD---VCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTK 702 (740)
Q Consensus 627 ~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D---~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~ 702 (740)
.+...-..+|.++. .+.|.+|.-.++....++|=.. +.--..| ++.+.++..... ....+|+-++-.+.++.
T Consensus 149 ~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd-~~~~~~l~~~ip---~~~~~iseSGI~~~~d~ 224 (254)
T PF00218_consen 149 ELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVD-LNRTEELAPLIP---KDVIVISESGIKTPEDA 224 (254)
T ss_dssp HHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBH-THHHHHHHCHSH---TTSEEEEESS-SSHHHH
T ss_pred HHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccC-hHHHHHHHhhCc---cceeEEeecCCCCHHHH
Confidence 34444567899876 7899999887776666766553 3333333 455656654332 33567888888999999
Q ss_pred HHHHHcCCCeEEEC
Q 004636 703 DNCMRVGMDGVILK 716 (740)
Q Consensus 703 ~~~l~~Ga~~~i~K 716 (740)
.++.++|+|+++.-
T Consensus 225 ~~l~~~G~davLVG 238 (254)
T PF00218_consen 225 RRLARAGADAVLVG 238 (254)
T ss_dssp HHHCTTT-SEEEES
T ss_pred HHHHHCCCCEEEEC
Confidence 99999999999874
No 360
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=29.25 E-value=1.4e+02 Score=29.90 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhcCCeEE---EeCCHHHHHHHHC---CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEec
Q 004636 622 GVSRSVTKGLLLHLGCDVM---TVSSVEECFRVVS---HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTG 695 (740)
Q Consensus 622 ~~~~~~l~~~L~~~g~~v~---~a~~g~eal~~~~---~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~ 695 (740)
...+..+.+-|.+.|+++. ..++...|.+.+. -+|-+++-|--|++.+|++. +.+...+|.+..
T Consensus 50 k~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT----------s~pn~VViglap 119 (262)
T KOG3040|consen 50 KESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT----------SDPNCVVIGLAP 119 (262)
T ss_pred chhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC----------CCCCeEEEecCc
Confidence 3444555667788999886 4567777777763 26889999999999999865 355555665543
Q ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 696 STDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 696 ~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
+-|+.+.|..+.+-+++.+
T Consensus 120 --------------------e~F~y~~ln~AFrvL~e~~ 138 (262)
T KOG3040|consen 120 --------------------EGFSYQRLNRAFRVLLEMK 138 (262)
T ss_pred --------------------ccccHHHHHHHHHHHHcCC
Confidence 3456666666666666554
No 361
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=29.18 E-value=2.1e+02 Score=29.12 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCC-eEEEEecCCCCC-CH--HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 645 VEECFRVVSHEH-QVVFMDVCVPGI-DG--YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 645 g~eal~~~~~~~-dlvl~D~~mp~~-dG--~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
..+.++.+...+ .++++|+..-++ .| +++++++.+. ...|+++-.+-.+.++..++++.|+++.+.
T Consensus 148 ~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~-----~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAAR-----ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHh-----cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 455555442225 699999976443 22 6777777532 235688778888999999999999999875
No 362
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=28.86 E-value=63 Score=32.49 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=35.6
Q ss_pred eeccHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCc
Q 004636 453 AVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISP 524 (740)
Q Consensus 453 v~~D~~~L~qVl~NLl~NAik~t~~-g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~ 524 (740)
+-|||.|-+-+-.|.++|++++++- |-.-.++... .-+++|.-+|.|||.
T Consensus 19 mPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYK----------------------Gk~iSvmg~GmGipS 69 (236)
T COG0813 19 MPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYK----------------------GKKISVMGHGMGIPS 69 (236)
T ss_pred cCCCCchHHHHHHHHHhhhhhhhhhcchhcccceec----------------------CcEEEEEEecCCCcc
Confidence 3489999999999999999999852 2122222111 136889999999986
No 363
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=28.77 E-value=2.4e+02 Score=28.05 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=58.0
Q ss_pred HHHHHhcCCeEEEe--CCHHHHHHHHC-CCCeEEEEecCCC-C----CCHHHHHHHHHHhhccCCCCceEEEEecCCCHH
Q 004636 629 KGLLLHLGCDVMTV--SSVEECFRVVS-HEHQVVFMDVCVP-G----IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNL 700 (740)
Q Consensus 629 ~~~L~~~g~~v~~a--~~g~eal~~~~-~~~dlvl~D~~mp-~----~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~ 700 (740)
.+.|++.||.+..- ..+...++.+. -.||.|=+|..+. . .....+++.+.+.... ...++| .++-.+.+
T Consensus 138 ~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~vi-a~gVe~~~ 214 (240)
T cd01948 138 LRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHS--LGLKVV-AEGVETEE 214 (240)
T ss_pred HHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHH--CCCeEE-EEecCCHH
Confidence 34467789987754 34455555554 4789999996542 1 2335566666444332 234455 68888999
Q ss_pred HHHHHHHcCCCe----EEECCCCHH
Q 004636 701 TKDNCMRVGMDG----VILKPVSLE 721 (740)
Q Consensus 701 ~~~~~l~~Ga~~----~i~KP~~~~ 721 (740)
....+.+.|++. |+.||.+.+
T Consensus 215 ~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 215 QLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHcCCCeeeeceeccCCCCC
Confidence 999999999853 667887653
No 364
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=28.65 E-value=3.9e+02 Score=25.16 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=30.4
Q ss_pred HhhhhhHHHHHHHhhHhHHHHhH-hhhcCCCchHHHHHHHHHHH
Q 004636 20 YQYISDFFIALAYFSIPLELIYF-VKKSAVFPYRWVLVQFGAFI 62 (740)
Q Consensus 20 ~~~~sd~~i~~~y~~i~~~~~~~-~~~~~~~~~~~~~~~~~~f~ 62 (740)
....-+.+++++++.--+.+.|. .+||+.+|...+.++....+
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~~ll~~v~ 97 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPKLYIIWLLISVL 97 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 44667888888777777777764 45667789888877765544
No 365
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=28.63 E-value=2.1e+02 Score=29.29 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhccCCCCceEEEEecCCC------HHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 670 GYEVAVHIHDKFTRRHERPLIVALTGSTD------NLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 670 G~e~~~~Ir~~~~~~~~~~~II~lt~~~~------~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
+++.++++|+. . ..|+++++-... +.....+.++|+++.+.=....+++...++.+
T Consensus 64 ~~~~~~~vr~~----~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKK----N-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhc----C-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 45555555432 1 234555555332 44566777888888877544555555444443
No 366
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=28.40 E-value=5.8e+02 Score=26.47 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHH-CCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCC-CHHHH
Q 004636 646 EECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPV-SLEKM 723 (740)
Q Consensus 646 ~eal~~~-~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~-~~~~L 723 (740)
..+.+++ ...||.|++|+.=-.+|--++...||.. + ....++++ =....+.....+++++|+++++.-=+ +.++.
T Consensus 30 p~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~-~-~~g~~~lV-Rvp~~~~~~i~r~LD~Ga~giivP~v~tae~a 106 (256)
T PRK10558 30 PITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMAL-K-GSASAPVV-RVPTNEPVIIKRLLDIGFYNFLIPFVETAEEA 106 (256)
T ss_pred cHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHH-h-hcCCCcEE-ECCCCCHHHHHHHhCCCCCeeeecCcCCHHHH
Confidence 4555655 4579999999987777776776666533 2 23344454 34666788889999999999877444 46666
Q ss_pred HHHHHH
Q 004636 724 RSVLSD 729 (740)
Q Consensus 724 ~~~l~~ 729 (740)
.+.++.
T Consensus 107 ~~~v~a 112 (256)
T PRK10558 107 RRAVAS 112 (256)
T ss_pred HHHHHH
Confidence 655544
No 367
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=28.28 E-value=2.7e+02 Score=27.73 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=57.3
Q ss_pred HHHHHhcCCeEEE--eCCHHHHHHHHC-CCCeEEEEecCCCC-----CCHHHHHHHHHHhhccCCCCceEEEEecCCCHH
Q 004636 629 KGLLLHLGCDVMT--VSSVEECFRVVS-HEHQVVFMDVCVPG-----IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNL 700 (740)
Q Consensus 629 ~~~L~~~g~~v~~--a~~g~eal~~~~-~~~dlvl~D~~mp~-----~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~ 700 (740)
...|++.|+.+.. +..+..-+..+. -++|.|=+|..+-. .....+++.+.+..+. ....+| .++-.+.+
T Consensus 139 i~~l~~~G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~vi-a~gVe~~~ 215 (241)
T smart00052 139 LQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQK--LGLQVV-AEGVETPE 215 (241)
T ss_pred HHHHHHCCCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHH--CCCeEE-EecCCCHH
Confidence 3556778998764 344555556554 46899999965421 1234555555443322 223355 58888888
Q ss_pred HHHHHHHcCCC---e-EEECCCCHH
Q 004636 701 TKDNCMRVGMD---G-VILKPVSLE 721 (740)
Q Consensus 701 ~~~~~l~~Ga~---~-~i~KP~~~~ 721 (740)
....+.+.|++ | |+.||.+.+
T Consensus 216 ~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 216 QLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHcCCCEEeeceeccCCCCC
Confidence 99999999986 3 677887654
No 368
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.15 E-value=3.3e+02 Score=32.33 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=57.6
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCC-HHHHHHHHC-CCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSS-VEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~~~-~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
+..+.++|.|+...+.+ ++.|+.+..-+- -.+.++... ++.|++++-..=++.| ..++...|+ ..++.+
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n-~~i~~~ar~----~~p~~~ 493 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS-LQLVELVKE----HFPHLQ 493 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH-HHHHHHHHH----hCCCCe
Confidence 45688999998865544 446888775432 334555443 4678887766333322 555555554 345566
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
|++-+ .+.+...+..++|+|..+.
T Consensus 494 iiaRa--~d~~~~~~L~~~Gad~v~~ 517 (621)
T PRK03562 494 IIARA--RDVDHYIRLRQAGVEKPER 517 (621)
T ss_pred EEEEE--CCHHHHHHHHHCCCCEEeh
Confidence 77544 3456677788999997654
No 369
>PRK04987 fumarate reductase subunit C; Provisional
Probab=28.07 E-value=2.4e+02 Score=25.99 Aligned_cols=76 Identities=11% Similarity=0.305 Sum_probs=50.2
Q ss_pred HHHHhHhhhcCCCc--hHHHHHHHHHHHHHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 004636 37 LELIYFVKKSAVFP--YRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLS 114 (740)
Q Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~ta~~s~~ta~~l~~~~p~~~~ 114 (740)
+--.|.+|--.-+| +-.+.+++|.|-+.-|....-+-..| . ..|+. -+...++.+.+++=+.+.+.++||++.
T Consensus 22 FYr~YMlRE~T~v~~~~f~lvLl~Gl~~L~~g~~aw~~f~~f-l-qnPiv---~~lniiaL~a~LlHa~TwF~~~Pka~~ 96 (130)
T PRK04987 22 FYRFYMLREATAVPAVWFSLVLIYGLFALKNGPEAWAGFVSF-L-QNPIV---VILNIITLAAALLHTKTWFEMAPKAAN 96 (130)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-H-hCcHH---HHHHHHHHHHHHHHHHHHHHHcchhhe
Confidence 33455555555454 33466777888777776643333332 2 12444 345899999999999999999999988
Q ss_pred ccc
Q 004636 115 VKT 117 (740)
Q Consensus 115 ~~~ 117 (740)
+..
T Consensus 97 i~v 99 (130)
T PRK04987 97 IIV 99 (130)
T ss_pred eee
Confidence 754
No 370
>PRK01581 speE spermidine synthase; Validated
Probab=27.99 E-value=3.5e+02 Score=29.80 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=44.3
Q ss_pred eEEeecCchHHHHHHHHH--HH---hc---CCeEE-EeCCHHHHHHHHCCCCeEEEEecCCCCCC------HHHHHHHHH
Q 004636 614 KVLVMDENGVSRSVTKGL--LL---HL---GCDVM-TVSSVEECFRVVSHEHQVVFMDVCVPGID------GYEVAVHIH 678 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~--L~---~~---g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~d------G~e~~~~Ir 678 (740)
+|.+||=|+.+.+..+.. |. +. +-++. ...|+.+.+......||+|++|..=|... .-++.+.++
T Consensus 176 ~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~ 255 (374)
T PRK01581 176 HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIA 255 (374)
T ss_pred eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHH
Confidence 788999999988877752 21 11 12343 56788877765556799999997443221 245666666
Q ss_pred Hhhc
Q 004636 679 DKFT 682 (740)
Q Consensus 679 ~~~~ 682 (740)
+..+
T Consensus 256 ~~Lk 259 (374)
T PRK01581 256 TFLT 259 (374)
T ss_pred HhcC
Confidence 6543
No 371
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.90 E-value=5.3e+02 Score=31.39 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCeEEEeCCHHHHHHHHC--CCCeEEEEecCCCC---CCHHHHHHHHHHhhccCCCCceEEEEecCCCHH
Q 004636 626 SVTKGLLLHLGCDVMTVSSVEECFRVVS--HEHQVVFMDVCVPG---IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNL 700 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~~a~~g~eal~~~~--~~~dlvl~D~~mp~---~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~ 700 (740)
+.++.+-+..|..+..+.+..+..+.+. ..+|+||+|- |+ .| -++.++++.......+.-.++++++....+
T Consensus 232 eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~VLIDT--AGRs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~ 308 (767)
T PRK14723 232 EQLRIYGRILGVPVHAVKDAADLRFALAALGDKHLVLIDT--VGMSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGD 308 (767)
T ss_pred HHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCEEEEeC--CCCCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHH
Confidence 4555555666777777777777655553 3568999885 33 23 224444433222223333456666665554
Q ss_pred HHH---HHHHc----CCCeEEEC
Q 004636 701 TKD---NCMRV----GMDGVILK 716 (740)
Q Consensus 701 ~~~---~~l~~----Ga~~~i~K 716 (740)
+.. +.++. +.+++|.-
T Consensus 309 ~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 309 TLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred HHHHHHHHHhhcccCCCCEEEEe
Confidence 433 33432 56776643
No 372
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=27.90 E-value=1.1e+02 Score=22.01 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHhcccch
Q 004636 50 PYRWVLVQFGAFIVLCGATHLINLWTFNMHS 80 (740)
Q Consensus 50 ~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~ 80 (740)
|+.+.-.++++|.+++=.-|++-.- |.||
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~~--~~~W 38 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVLS--WTPW 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSSH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh--cCCC
Confidence 7888888899999999999987443 6655
No 373
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.85 E-value=3.3e+02 Score=28.10 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=43.0
Q ss_pred hhHHhhhhhHHHHHHH---hhHhHHHHhHhhhc--CCCchHHHHHHHHHHHHHhhHH------HHHHHHhcccc
Q 004636 17 LMKYQYISDFFIALAY---FSIPLELIYFVKKS--AVFPYRWVLVQFGAFIVLCGAT------HLINLWTFNMH 79 (740)
Q Consensus 17 ~~~~~~~sd~~i~~~y---~~i~~~~~~~~~~~--~~~~~~~~~~~~~~f~~~cg~~------h~~~~~~~~~~ 79 (740)
.++-|+.+|.....+- |.+|+.++|+..-- --+|=.|.+.+|..++ +||.+ ..++.+.||.+
T Consensus 103 ~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~l-a~~~~~~F~i~f~~~~~aFwt~ 175 (268)
T COG4587 103 YLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLAL-ALLFLLRFLIQFTFGLFAFWTE 175 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcc
Confidence 4688999999999988 88999999987543 3345567777676654 55533 23455666664
No 374
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.79 E-value=2.9e+02 Score=29.14 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=46.5
Q ss_pred EEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 640 MTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 640 ~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
+.+.|.+|+.+.+...+|+|.+|-+-| -++.+.+ +.. ....+ +..++.-+.+...+..+.|+|-+-
T Consensus 199 VEv~tleea~ea~~~gaDiI~LDn~s~----e~l~~av-~~~---~~~~~-leaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 199 VEVDTLDQLEEALELGVDAVLLDNMTP----DTLREAV-AIV---AGRAI-TEASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred EEeCCHHHHHHHHHcCCCEEEeCCCCH----HHHHHHH-HHh---CCCce-EEEECCCCHHHHHHHHhcCCCEEE
Confidence 578999999999988899999995333 3333322 221 12233 567888999988888999998643
No 375
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=27.65 E-value=1.1e+02 Score=31.68 Aligned_cols=69 Identities=9% Similarity=0.155 Sum_probs=49.8
Q ss_pred eEEeecCchHHHHHHHHHHHhcCC-----eE-EEeCCHHHHHHHHCC-CCeEEEEecCCCCCCH-----HHHHHHHHHhh
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGC-----DV-MTVSSVEECFRVVSH-EHQVVFMDVCVPGIDG-----YEVAVHIHDKF 681 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~-----~v-~~a~~g~eal~~~~~-~~dlvl~D~~mp~~dG-----~e~~~~Ir~~~ 681 (740)
+|-+||=|+.+.+..++.+..... ++ +...||..-++.... .+|+|++|..-|...+ .|+.+.+++..
T Consensus 102 ~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L 181 (246)
T PF01564_consen 102 SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRL 181 (246)
T ss_dssp EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHE
T ss_pred eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhc
Confidence 688999999999999998864321 22 377888888887766 8999999998876544 46666666554
Q ss_pred c
Q 004636 682 T 682 (740)
Q Consensus 682 ~ 682 (740)
.
T Consensus 182 ~ 182 (246)
T PF01564_consen 182 K 182 (246)
T ss_dssp E
T ss_pred C
Confidence 3
No 376
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.61 E-value=5.9e+02 Score=27.00 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCeEEEeCCHHHHHH----------------HHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCce
Q 004636 626 SVTKGLLLHLGCDVMTVSSVEECFR----------------VVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~~a~~g~eal~----------------~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
..+..+|++.|+++....+..+.+. .+...+|+|+. =+.||. +++..|.. . ...+|
T Consensus 19 ~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT-~L~aa~~~-~--~~~~P 90 (292)
T PRK01911 19 QELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT-FLRTATYV-G--NSNIP 90 (292)
T ss_pred HHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH-HHHHHHHh-c--CCCCC
Confidence 4455567778998887554222211 11224577665 367883 33333322 1 23467
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|+.+.. |=-+|++ .++++++.+.+.++++++
T Consensus 91 ilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 91 ILGINT-------------GRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred EEEEec-------------CCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 886542 5567777 688999999999998775
No 377
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=27.33 E-value=6.2e+02 Score=25.35 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=42.8
Q ss_pred HHHHHHHHC-CCC-eEEEEecCCCCC---CHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 645 VEECFRVVS-HEH-QVVFMDVCVPGI---DGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 645 g~eal~~~~-~~~-dlvl~D~~mp~~---dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
..+..+.+. ... -++++|+..-++ -.+++++++++. ...||++-.+-.+.++..++++.|+++++.
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 334444443 334 467787744222 126778777642 235688778888888899999999999765
No 378
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=26.94 E-value=7.9e+02 Score=27.80 Aligned_cols=101 Identities=16% Similarity=0.259 Sum_probs=60.5
Q ss_pred CceEEeecC---chHHH-HHHHHHHHhc-CCeEE--EeCCHHHHHHHHCCCCeEEEEecCCCC-------C-----CHHH
Q 004636 612 GLKVLVMDE---NGVSR-SVTKGLLLHL-GCDVM--TVSSVEECFRVVSHEHQVVFMDVCVPG-------I-----DGYE 672 (740)
Q Consensus 612 ~~~ILIvdD---~~~~~-~~l~~~L~~~-g~~v~--~a~~g~eal~~~~~~~dlvl~D~~mp~-------~-----dG~e 672 (740)
+..++.||- +.... +.++.+=+.. ...+. .+.+.++|..++....|.|-+.+. |+ . --++
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g-~G~~~~t~~~~~~g~p~~~ 314 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIG-PGSICTTRIVAGVGVPQIT 314 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCC-CCcCCccceecCCCccHHH
Confidence 456788876 33333 3333332221 33333 367788888888777787755431 21 1 1234
Q ss_pred HHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 673 VAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 673 ~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
++..+++... ....|||+=.+-....+..+|+.+||+.++.
T Consensus 315 ~i~~~~~~~~--~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 315 AVYDVAEYAA--QSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred HHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5444543322 1246788877888999999999999998764
No 379
>PRK04302 triosephosphate isomerase; Provisional
Probab=26.93 E-value=6.6e+02 Score=25.23 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEec----CCC-C-----CCH-HHHHHHHHHhhccCCCCceEEE
Q 004636 625 RSVTKGLLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMDV----CVP-G-----IDG-YEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 625 ~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D~----~mp-~-----~dG-~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
.+.+... .+.|..+. ++.+.+++.......+|+|-..- ... + .++ .++.+.+|+ .....||++
T Consensus 104 ~~~v~~a-~~~Gl~~I~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~----~~~~~pvi~ 178 (223)
T PRK04302 104 EAVVERA-KKLGLESVVCVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKK----VNPDVKVLC 178 (223)
T ss_pred HHHHHHH-HHCCCeEEEEcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHh----ccCCCEEEE
Confidence 3444444 34688766 44555555554445667654321 110 1 111 233344442 223467876
Q ss_pred EecCCCHHHHHHHHHcCCCeEEEC
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILK 716 (740)
Q Consensus 693 lt~~~~~~~~~~~l~~Ga~~~i~K 716 (740)
-.+-...++..++.+.|+|+++.-
T Consensus 179 GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 179 GAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred ECCCCCHHHHHHHHcCCCCEEEEe
Confidence 666678888888999999998753
No 380
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=26.80 E-value=9.3e+02 Score=26.94 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=59.9
Q ss_pred HHHHHhcCCeEEE----eCCHHH-HHHHHCCCCeEEEEecC----CCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCH
Q 004636 629 KGLLLHLGCDVMT----VSSVEE-CFRVVSHEHQVVFMDVC----VPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDN 699 (740)
Q Consensus 629 ~~~L~~~g~~v~~----a~~g~e-al~~~~~~~dlvl~D~~----mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~ 699 (740)
.+..++.|..+.. ..+..+ +..+.....|.|.+... .....+++.++++++. ...||++.. .-..
T Consensus 100 i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-----~~iPI~a~G-GI~~ 173 (430)
T PRK07028 100 VRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEE-----VSIPIAVAG-GLDA 173 (430)
T ss_pred HHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhh-----CCCcEEEEC-CCCH
Confidence 3444556766654 123233 33334456788766532 1224667888877642 125676544 4467
Q ss_pred HHHHHHHHcCCCeE-----EECCCCHHHHHHHHHHHHcc
Q 004636 700 LTKDNCMRVGMDGV-----ILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 700 ~~~~~~l~~Ga~~~-----i~KP~~~~~L~~~l~~~l~~ 733 (740)
+....++++|++.+ |.+.-++.+....+++.++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 77888999999965 45666777777777776654
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.78 E-value=4.6e+02 Score=28.94 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCeEEEeCCHHHHHHHHC--CCCeEEEEecC-CCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHH
Q 004636 626 SVTKGLLLHLGCDVMTVSSVEECFRVVS--HEHQVVFMDVC-VPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTK 702 (740)
Q Consensus 626 ~~l~~~L~~~g~~v~~a~~g~eal~~~~--~~~dlvl~D~~-mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~ 702 (740)
+.++.+-+..|..+..+.++.+....+. ..+|+||+|-- ++..|.. +.+.+........+.-.++++++....++.
T Consensus 184 EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~-l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 184 EQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRT-VSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred HHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHH-HHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 5556666667888877777665544442 45799999953 3333332 333332221111122236667776666553
Q ss_pred H
Q 004636 703 D 703 (740)
Q Consensus 703 ~ 703 (740)
.
T Consensus 263 ~ 263 (374)
T PRK14722 263 N 263 (374)
T ss_pred H
Confidence 3
No 382
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=26.72 E-value=6e+02 Score=24.66 Aligned_cols=101 Identities=14% Similarity=0.225 Sum_probs=57.8
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCe-EE-EeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCD-VM-TVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~-v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~I 690 (740)
.+|..+|-++...+.+++..++.|+. +. ...+..+ +. ....+|+|+++. +..+ -++.+.+++..+ +.-.+
T Consensus 67 ~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~~-~~~~fD~I~s~~-~~~~--~~~~~~~~~~Lk---pgG~l 138 (181)
T TIGR00138 67 LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-FQ-HEEQFDVITSRA-LASL--NVLLELTLNLLK---VGGYF 138 (181)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-cc-ccCCccEEEehh-hhCH--HHHHHHHHHhcC---CCCEE
Confidence 36889999999888888888877763 43 3345444 21 235789999986 3332 234455544332 22334
Q ss_pred EEEecCCCHHHHH----HHHHcCCCeEEECCCCHH
Q 004636 691 VALTGSTDNLTKD----NCMRVGMDGVILKPVSLE 721 (740)
Q Consensus 691 I~lt~~~~~~~~~----~~l~~Ga~~~i~KP~~~~ 721 (740)
++.-+........ +|...|..-.=.||++..
T Consensus 139 vi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 139 LAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred EEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 4444444443333 333357776556666543
No 383
>PRK13566 anthranilate synthase; Provisional
Probab=26.63 E-value=1.1e+02 Score=36.79 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEE
Q 004636 609 NFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFM 661 (740)
Q Consensus 609 ~~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~ 661 (740)
...+.+|||||-...+...+.+.|++.|++|.+....... +.+ ...+|.||+
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~~~~~DgVVL 575 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLDRVNPDLVVL 575 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhhhcCCCEEEE
Confidence 3467899999988888888999999999999877654321 222 246887665
No 384
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=26.51 E-value=39 Score=34.78 Aligned_cols=16 Identities=63% Similarity=1.070 Sum_probs=14.1
Q ss_pred CCcchhHHHHHHHHHH
Q 004636 546 SGSGLGLAICKRFVNL 561 (740)
Q Consensus 546 ~GtGLGLaI~k~iv~~ 561 (740)
..+||||+||+++++.
T Consensus 11 anSglGl~i~~RLl~~ 26 (341)
T KOG1478|consen 11 ANSGLGLAICKRLLAE 26 (341)
T ss_pred CCCcccHHHHHHHHhc
Confidence 4679999999999975
No 385
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.39 E-value=2.7e+02 Score=31.08 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHCCCCeEEEEecCCCC-CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 647 ECFRVVSHEHQVVFMDVCVPG-IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 647 eal~~~~~~~dlvl~D~~mp~-~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
++-.++....|+|.+|..-+. ..-.++++.||+.+ +..+|| +..-...+....+.++|+|...
T Consensus 157 ~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~----p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 157 RVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKY----PNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhC----CCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 334445668899999997764 34457777776532 334444 4555677888899999999875
No 386
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=26.35 E-value=1.6e+02 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHhhhhhHHH--HHHHHHHHH
Q 004636 342 RARNDFLAVMNHEMRTPMH--AIIALSSLL 369 (740)
Q Consensus 342 ~~k~~fla~iSHELRtPL~--~I~g~~~lL 369 (740)
..+.+|...|+.||+||.. .+..+...+
T Consensus 28 ~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 28 ALVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 4568899999999999964 444444444
No 387
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=26.30 E-value=2.5e+02 Score=25.65 Aligned_cols=72 Identities=11% Similarity=0.327 Sum_probs=47.5
Q ss_pred HHHhHhhhcCCCc--hHHHHHHHHHHHHHhhHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004636 38 ELIYFVKKSAVFP--YRWVLVQFGAFIVLCGATHLINLWTFNMH--SRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLL 113 (740)
Q Consensus 38 ~~~~~~~~~~~~~--~~~~~~~~~~f~~~cg~~h~~~~~~~~~~--~~~~~~~~~~~k~~ta~~s~~ta~~l~~~~p~~~ 113 (740)
--.|.+|--.-+| +-.+.+++|.|-+.-|.. .|.=|.+ ..|+. -+...++.+.+++=+.+.+.++||+.
T Consensus 19 Yr~YMlRE~T~v~~~~f~lvLl~Gl~~L~~g~~----aw~~f~~flqnPiv---~~lniiaL~a~L~Ha~TwF~~~Pkam 91 (124)
T cd00546 19 YRFYMLREATAVPTVWFSLVLLYGLFALGSGPE----SWAGFVSFLQNPIV---VLLNIIALAAALLHAKTWFEMAPKVM 91 (124)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455555555444 334566777777777764 3443321 12433 34589999999999999999999998
Q ss_pred ccc
Q 004636 114 SVK 116 (740)
Q Consensus 114 ~~~ 116 (740)
.+.
T Consensus 92 ~i~ 94 (124)
T cd00546 92 NII 94 (124)
T ss_pred hhh
Confidence 864
No 388
>PRK13603 fumarate reductase subunit C; Provisional
Probab=26.17 E-value=2.6e+02 Score=25.58 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=47.4
Q ss_pred HHHhHhhhcCCCc--hHHHHHHHHHHHHHhhHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004636 38 ELIYFVKKSAVFP--YRWVLVQFGAFIVLCGATHLINLWTFNMH--SRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLL 113 (740)
Q Consensus 38 ~~~~~~~~~~~~~--~~~~~~~~~~f~~~cg~~h~~~~~~~~~~--~~~~~~~~~~~k~~ta~~s~~ta~~l~~~~p~~~ 113 (740)
--.|.+|--.-+| +-.+.+++|.|-+.-|.- .|.=|.. ..|+. -+...++.+.+++=+.+.+.++||++
T Consensus 19 Yr~YMlRE~T~v~~~~f~lvLl~Gl~~L~~G~~----aw~~f~~flqnPiv---v~lniiaL~a~L~Ha~TwF~~~Pkam 91 (126)
T PRK13603 19 YLRFMLREISCIFVAWFVLYLVLVLRAVGAGGN----SYQRFLDFSANPVV---VVLNVVALSFLLLHAVTWFGSAPRAM 91 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcChH----HHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455555555444 334566677777776665 3433321 12433 34589999999999999999999999
Q ss_pred ccc
Q 004636 114 SVK 116 (740)
Q Consensus 114 ~~~ 116 (740)
.+.
T Consensus 92 ~I~ 94 (126)
T PRK13603 92 VIQ 94 (126)
T ss_pred hhh
Confidence 864
No 389
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=25.93 E-value=3.6e+02 Score=28.73 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=45.0
Q ss_pred HHHHHHHHC---CCCeEEEEecCCCC--CCHHHHHHHHHHhhccCC-CCceEEEEecCCCHHHHHHHHHcCCCeE
Q 004636 645 VEECFRVVS---HEHQVVFMDVCVPG--IDGYEVAVHIHDKFTRRH-ERPLIVALTGSTDNLTKDNCMRVGMDGV 713 (740)
Q Consensus 645 g~eal~~~~---~~~dlvl~D~~mp~--~dG~e~~~~Ir~~~~~~~-~~~~II~lt~~~~~~~~~~~l~~Ga~~~ 713 (740)
..+|++... ..+|.|.+| +|.+ -|..+.++++++...... +.. .|..|+.-+.+...+..+.|+|-|
T Consensus 198 v~eal~~~~~~~~~~d~I~lD-n~~~~~G~~~~~~~~~~~~l~~~g~~~~-~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLD-TPSSRRGVFRYLIREVRWALDIRGYKHV-KIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEEC-CCCCCCCCHHHHHHHHHHHHHhCCCCCe-EEEEeCCCCHHHHHHHHHcCCCEE
Confidence 346776653 258999999 4531 235677777776654332 333 456788888888888889997765
No 390
>PF14979 TMEM52: Transmembrane 52
Probab=25.78 E-value=60 Score=30.27 Aligned_cols=19 Identities=37% Similarity=1.032 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHhhHHH
Q 004636 51 YRWVLVQFGAFIVLCGATH 69 (740)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~h 69 (740)
|-|++++.++..++||.|-
T Consensus 21 yIwLill~~~llLLCG~ta 39 (154)
T PF14979_consen 21 YIWLILLIGFLLLLCGLTA 39 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4588888888889999763
No 391
>PRK10060 RNase II stability modulator; Provisional
Probab=25.71 E-value=4.7e+02 Score=31.20 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=74.5
Q ss_pred ecCchHHHHHHHHHHHhcCCeEEE--eCCHHHHHHHHC-CCCeEEEEecCC----C-CCCHHHHHHHHHHhhccCCCCce
Q 004636 618 MDENGVSRSVTKGLLLHLGCDVMT--VSSVEECFRVVS-HEHQVVFMDVCV----P-GIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 618 vdD~~~~~~~l~~~L~~~g~~v~~--a~~g~eal~~~~-~~~dlvl~D~~m----p-~~dG~e~~~~Ir~~~~~~~~~~~ 689 (740)
++|.......+ ..|++.|+.+.. +.+|...+..+. -++|.|=+|-.. . +.....+++.|-...... ...
T Consensus 537 ~~~~~~~~~~l-~~L~~~G~~ialDdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~l--g~~ 613 (663)
T PRK10060 537 IENEELALSVI-QQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQAL--NLQ 613 (663)
T ss_pred hcCHHHHHHHH-HHHHHCCCEEEEECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHC--CCc
Confidence 34555555555 557888998875 567777777775 467998888432 2 234456666654433322 233
Q ss_pred EEEEecCCCHHHHHHHHHcCCCe----EEECCCCHHHHHHHHHHHHcc
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDG----VILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lt~~~~~~~~~~~l~~Ga~~----~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+| ..+-.+.+....+.+.|++. |+.||...+++...+++...+
T Consensus 614 vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~~~ 660 (663)
T PRK10060 614 VI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYLKR 660 (663)
T ss_pred EE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhhhc
Confidence 55 47777888888888999864 688999999998888765443
No 392
>MTH00145 CYTB cytochrome b; Provisional
Probab=25.62 E-value=2.7e+02 Score=30.73 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=59.0
Q ss_pred hhHHhhhhhHHHHHHHhhHhHHHHhHhhh-cCCCchHHHHHHH----HHHHHHhhHHHHHHHHhcccchhHHHHHHHHHH
Q 004636 17 LMKYQYISDFFIALAYFSIPLELIYFVKK-SAVFPYRWVLVQF----GAFIVLCGATHLINLWTFNMHSRTVAIVMTTAK 91 (740)
Q Consensus 17 ~~~~~~~sd~~i~~~y~~i~~~~~~~~~~-~~~~~~~~~~~~~----~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k 91 (740)
+.-.|++|=++.|.-|-.-+-.-..-+.. -+|+||.|.+-.. +.|.++|---|+.-.+=+--.-++..|.+|++-
T Consensus 41 ~~~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~Gv~l 120 (379)
T MTH00145 41 CLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTL 120 (379)
T ss_pred HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHhHHH
Confidence 44678999999998887554322222222 4689999988654 668889999999976433222345679988776
Q ss_pred HHHHHHHHHHHHHHH
Q 004636 92 VLTAVVSCATALMLV 106 (740)
Q Consensus 92 ~~ta~~s~~ta~~l~ 106 (740)
.+..++...|..+|.
T Consensus 121 ~~l~~~~af~GYvLp 135 (379)
T MTH00145 121 LLLSMGTAFLGYVLP 135 (379)
T ss_pred HHHHHHHHHHhhccC
Confidence 665555555555443
No 393
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=25.60 E-value=7e+02 Score=27.27 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=46.6
Q ss_pred CCHHHHHHHHCCCCeEEEEecC----C-CCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 643 SSVEECFRVVSHEHQVVFMDVC----V-PGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 643 ~~g~eal~~~~~~~dlvl~D~~----m-p~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
.+.++|..+.....|.|++.-+ + .....++.+.+|++.. ....|||+-.+-....+..+++..||+.+..
T Consensus 230 ~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~---~~~i~vi~dGGIr~g~Di~kaLalGA~~V~i 304 (351)
T cd04737 230 QSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV---NHRVPIIFDSGVRRGEHVFKALASGADAVAV 304 (351)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh---CCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5666666666666666655311 0 1112467777775432 2347799888889999999999999998654
No 394
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=25.52 E-value=1.9e+02 Score=28.31 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.4
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeC
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVS 643 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~ 643 (740)
+||||||-.+..-..+.+.|++.|+++.+..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 4899999888877779999999998887665
No 395
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=25.50 E-value=3.6e+02 Score=28.50 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=50.6
Q ss_pred eEEeecCchHHHHHHHHHHHhcC--Ce----EEEeCCHHHHHHHHCCCCeEEEEecCCCCCC-----HHHHHHHHHHhhc
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLG--CD----VMTVSSVEECFRVVSHEHQVVFMDVCVPGID-----GYEVAVHIHDKFT 682 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g--~~----v~~a~~g~eal~~~~~~~dlvl~D~~mp~~d-----G~e~~~~Ir~~~~ 682 (740)
++-+||=|+.+.+.-++.|.... .. -+...||.+-++-....+|+||+|..=|..- -.++-+.+++..+
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~ 181 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALK 181 (282)
T ss_pred eEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcC
Confidence 78999999999999999997543 22 2356888887776666899999999877311 2566666665543
No 396
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=25.22 E-value=4.2e+02 Score=28.16 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=47.7
Q ss_pred eEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEE
Q 004636 638 DVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVI 714 (740)
Q Consensus 638 ~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i 714 (740)
-.+.+.|.+|+.+.+...+|+|.+|-.-| -++.+.+ +.. ..+. .+..++.-+.+...+.-+.|+|-+.
T Consensus 211 IeVEv~sleea~ea~~~gaDiI~LDn~s~----e~~~~av-~~~---~~~~-~ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 211 VEVEVENLDELDQALKAGADIIMLDNFTT----EQMREAV-KRT---NGRA-LLEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEeCCCCh----HHHHHHH-Hhh---cCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 34578999999999988899999995444 2232222 221 1233 5667888888888899999998654
No 397
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.21 E-value=7.3e+02 Score=25.16 Aligned_cols=101 Identities=15% Similarity=0.214 Sum_probs=59.6
Q ss_pred HHHHhcCCeEEEeCCH---HHHHHHHCCCCeEEEEecCCCCCCHHHHH-------HHHHHhhccCCCCceEEEEecCCCH
Q 004636 630 GLLLHLGCDVMTVSSV---EECFRVVSHEHQVVFMDVCVPGIDGYEVA-------VHIHDKFTRRHERPLIVALTGSTDN 699 (740)
Q Consensus 630 ~~L~~~g~~v~~a~~g---~eal~~~~~~~dlvl~D~~mp~~dG~e~~-------~~Ir~~~~~~~~~~~II~lt~~~~~ 699 (740)
+.+++.|+.+-.+=|. -+.++-+-...|.|++=-.=|+..|-.+. +++|+........ ..|.+.+..+.
T Consensus 104 ~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~-~~IeVDGGI~~ 182 (223)
T PRK08745 104 QLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKP-IRLEIDGGVKA 182 (223)
T ss_pred HHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCC-eeEEEECCCCH
Confidence 5567778877665333 33444333355654442234787775443 3444333222222 45778999999
Q ss_pred HHHHHHHHcCCCeEE-----ECCCCHHHHHHHHHHHH
Q 004636 700 LTKDNCMRVGMDGVI-----LKPVSLEKMRSVLSDLL 731 (740)
Q Consensus 700 ~~~~~~l~~Ga~~~i-----~KP~~~~~L~~~l~~~l 731 (740)
+....+.++|||-++ -|.-++++-.+.+++.+
T Consensus 183 eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 183 DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 999999999999654 45445666666655543
No 398
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.91 E-value=7.4e+02 Score=26.50 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=57.6
Q ss_pred eEEee--cCchH---HHHHHHHHHHhcCCeEEEeCCHHHHHH-------------------HHCCCCeEEEEecCCCCCC
Q 004636 614 KVLVM--DENGV---SRSVTKGLLLHLGCDVMTVSSVEECFR-------------------VVSHEHQVVFMDVCVPGID 669 (740)
Q Consensus 614 ~ILIv--dD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~-------------------~~~~~~dlvl~D~~mp~~d 669 (740)
+|.|+ -+.+. ....+...|++.|+++....+....+. .....+|+|+. =+.|
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGD 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGGD 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcCC
Confidence 46666 23333 334556667778998887654322211 11123566655 3678
Q ss_pred HHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 670 GYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 670 G~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
|. +++..|.. ....+||+.+. .|=-+|++ .++++++.+.+.+++++.
T Consensus 83 GT-~L~aar~~---~~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 83 GT-ILRAAELA---RAADVPVLGVN-------------LGHVGFLA-EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred HH-HHHHHHHh---ccCCCcEEEEe-------------cCCCceec-cCCHHHHHHHHHHHHcCC
Confidence 83 23333321 12345787654 26678888 488899999999998775
No 399
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=24.83 E-value=7.6e+02 Score=26.11 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=58.7
Q ss_pred eEEee--cCchHH---HHHHHHHHHhcCCeEEEeCCHHHH----------HHHHCCCCeEEEEecCCCCCCHHHHHHHHH
Q 004636 614 KVLVM--DENGVS---RSVTKGLLLHLGCDVMTVSSVEEC----------FRVVSHEHQVVFMDVCVPGIDGYEVAVHIH 678 (740)
Q Consensus 614 ~ILIv--dD~~~~---~~~l~~~L~~~g~~v~~a~~g~ea----------l~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir 678 (740)
+|.|+ .+.+.. ...+.+.|++.|+++....+.... .+.....+|+|+. =+.||. +++.+|
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 36665 333333 345556667789887765432221 1122235687776 366873 334443
Q ss_pred HhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 679 DKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 679 ~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
.. ....+|++.+. .|=-+|++ .++++++.+.+.+++++.
T Consensus 82 ~~---~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 82 QL---APYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred Hh---cCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 32 12356677654 35557888 789999999999998765
No 400
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.80 E-value=1.7e+02 Score=30.98 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=50.4
Q ss_pred CCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHH
Q 004636 610 FPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEV 673 (740)
Q Consensus 610 ~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~ 673 (740)
+.|.+|+||-.....-.-+..+|.+.|..|+.+.+-..-+.....+.|+|+.-..-|++-.-+.
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~ 218 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASM 218 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHH
Confidence 4678999999998888889999988899999887655445544457799999998888754443
No 401
>PLN02591 tryptophan synthase
Probab=24.66 E-value=6.9e+02 Score=25.82 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=56.2
Q ss_pred EEeecCchHHHHHHHHHHHhcCCeEEE-e-CCH-HHHHHHH-CC--CCeEEEEecCCCC------CCHHHHHHHHHHhhc
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGCDVMT-V-SSV-EECFRVV-SH--EHQVVFMDVCVPG------IDGYEVAVHIHDKFT 682 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~~v~~-a-~~g-~eal~~~-~~--~~dlvl~D~~mp~------~dG~e~~~~Ir~~~~ 682 (740)
++|.|=...-..-+...+++.|...+. + .+. ++=++.+ .. .|=.++.=..-.+ .+-.+.++++|+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~--- 186 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKE--- 186 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh---
Confidence 677776666666677777888877653 2 443 2223333 33 3322222111111 112344666653
Q ss_pred cCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECC
Q 004636 683 RRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKP 717 (740)
Q Consensus 683 ~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP 717 (740)
....||++=.+-.+.++..+..+.|||+.+.-.
T Consensus 187 --~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 --VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred --cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 234556654566678888899999999999864
No 402
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=24.51 E-value=5.6e+02 Score=26.43 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHHhcCCeEE--EeCCHHHHHHHHC-CCCeEEEEecCC-----CCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 620 ENGVSRSVTKGLLLHLGCDVM--TVSSVEECFRVVS-HEHQVVFMDVCV-----PGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 620 D~~~~~~~l~~~L~~~g~~v~--~a~~g~eal~~~~-~~~dlvl~D~~m-----p~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
+.+.....+ +.|+..|+.+. -+.+|...+..+. -++|.|=+|-.+ .......+++.|-+..+. -...+|
T Consensus 134 ~~~~~~~~l-~~L~~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~--l~~~vv 210 (256)
T COG2200 134 DLDTALALL-RQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHK--LGLTVV 210 (256)
T ss_pred CHHHHHHHH-HHHHHCCCeEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHH--CCCEEE
Confidence 333444444 45677898765 5778888888875 478988877544 223344566666444332 223355
Q ss_pred EEecCCCHHHHHHHHHcCCCe----EEECCCCHHHHHHHHHH
Q 004636 692 ALTGSTDNLTKDNCMRVGMDG----VILKPVSLEKMRSVLSD 729 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~Ga~~----~i~KP~~~~~L~~~l~~ 729 (740)
.-+-.+.+....+.+.|++. |+.||...+++...+.+
T Consensus 211 -aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 211 -AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred -EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHhh
Confidence 35666777777888999983 78999999887776544
No 403
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=24.51 E-value=1e+02 Score=30.20 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=34.2
Q ss_pred EEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEE
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFM 661 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~ 661 (740)
||+||.....-.-+...|++.|+++.++.+..--++.+ ...||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEE
Confidence 79999999998889999999999999887643112223 346765554
No 404
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=24.36 E-value=1.6e+02 Score=31.17 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCe------EEECCCCHHHHHHHHHHHHccc
Q 004636 671 YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDG------VILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 671 ~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~------~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
++.+.++++. -..|||+..+-.+.++..+++.+|||. ++.+|.-..++.+.+.++++.+
T Consensus 223 l~~v~~i~~~-----~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKM-----VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhc-----CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 4556666532 236799888889999999999999997 6778977888888888887664
No 405
>PLN02366 spermidine synthase
Probab=24.22 E-value=3.4e+02 Score=29.03 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=45.7
Q ss_pred eEEeecCchHHHHHHHHHHHhcC-----CeEE-EeCCHHHHHHHH-CCCCeEEEEecCCCCCC-----HHHHHHHHHHhh
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLG-----CDVM-TVSSVEECFRVV-SHEHQVVFMDVCVPGID-----GYEVAVHIHDKF 681 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g-----~~v~-~a~~g~eal~~~-~~~~dlvl~D~~mp~~d-----G~e~~~~Ir~~~ 681 (740)
+|-+||=|+.+.+..++.+...+ -++. ...|+.+.++.. ...+|+|++|..-|..- .-++.+.+++..
T Consensus 117 ~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L 196 (308)
T PLN02366 117 QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARAL 196 (308)
T ss_pred eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhc
Confidence 68899989988888888775431 1233 457777766654 45799999998665422 235566666554
Q ss_pred c
Q 004636 682 T 682 (740)
Q Consensus 682 ~ 682 (740)
+
T Consensus 197 ~ 197 (308)
T PLN02366 197 R 197 (308)
T ss_pred C
Confidence 3
No 406
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.14 E-value=3.3e+02 Score=27.38 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=40.0
Q ss_pred CCe-EEEEecCCCCC-CH--HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcC-CCeEEE
Q 004636 655 EHQ-VVFMDVCVPGI-DG--YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVG-MDGVIL 715 (740)
Q Consensus 655 ~~d-lvl~D~~mp~~-dG--~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~G-a~~~i~ 715 (740)
.++ ++++|...-++ .| +++++++++. ...|||+-.+-.+.++..++++.| +++++.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAA-----VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 344 78887754322 33 6888887542 125688888888899999999988 999875
No 407
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.12 E-value=3e+02 Score=30.06 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=55.9
Q ss_pred EeCCHHHHHHHHCCCCeEEEEecCCCC-------CCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeE
Q 004636 641 TVSSVEECFRVVSHEHQVVFMDVCVPG-------IDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGV 713 (740)
Q Consensus 641 ~a~~g~eal~~~~~~~dlvl~D~~mp~-------~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~ 713 (740)
.+.|.+++.++....+|.|.+.-.-|. .-|++.++.+.+. ...||+++.+- +.+...+.+++|++++
T Consensus 246 S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~-----~~iPv~AiGGI-~~~ni~~l~~~Ga~gV 319 (347)
T PRK02615 246 STTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE-----APIPWFAIGGI-DKSNIPEVLQAGAKRV 319 (347)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh-----CCCCEEEECCC-CHHHHHHHHHcCCcEE
Confidence 567788877777777899887544331 3467888777532 23678887655 4677778899999986
Q ss_pred E-----ECCCCHHHHHHHHHHHHc
Q 004636 714 I-----LKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 714 i-----~KP~~~~~L~~~l~~~l~ 732 (740)
- .+--++.+-...+.+.+.
T Consensus 320 AvisaI~~a~dp~~~~~~l~~~l~ 343 (347)
T PRK02615 320 AVVRAIMGAEDPKQATQELLKQLS 343 (347)
T ss_pred EEeHHHhCCCCHHHHHHHHHHHHh
Confidence 4 344455555555554443
No 408
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=24.08 E-value=2.2e+02 Score=28.84 Aligned_cols=54 Identities=11% Similarity=0.250 Sum_probs=41.2
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCe--EEEeC--CHHHHHHH-HCCCCeEEEEecCCCC
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCD--VMTVS--SVEECFRV-VSHEHQVVFMDVCVPG 667 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~--v~~a~--~g~eal~~-~~~~~dlvl~D~~mp~ 667 (740)
++.=+|-|+...+..++.+++.|.. +.... +..+.++. ....||+||+|..-+.
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~ 144 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKAD 144 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCChhh
Confidence 7888999999999999999998864 33333 56666654 3468899999986543
No 409
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=24.04 E-value=8.6e+02 Score=31.33 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=61.9
Q ss_pred ceEEee----cCchHHHHHHHHHHHhcCCeEEEeC---CHHHHHHHH-CCCCeEEEEecCCC-CCCH-HHHHHHHHHhhc
Q 004636 613 LKVLVM----DENGVSRSVTKGLLLHLGCDVMTVS---SVEECFRVV-SHEHQVVFMDVCVP-GIDG-YEVAVHIHDKFT 682 (740)
Q Consensus 613 ~~ILIv----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~~-~~~~dlvl~D~~mp-~~dG-~e~~~~Ir~~~~ 682 (740)
.+|++. |-+..-..++..+|+..||+|+-.. ..++.++.+ ...+|+|-+...|. .|.. -++++.+++
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~--- 809 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNR--- 809 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHh---
Confidence 367776 7778888888899999999998553 355666665 46899999887764 3333 344555543
Q ss_pred cCCCCceEEEEecCCCHHHHHH-H--HHcCCCeEEE
Q 004636 683 RRHERPLIVALTGSTDNLTKDN-C--MRVGMDGVIL 715 (740)
Q Consensus 683 ~~~~~~~II~lt~~~~~~~~~~-~--l~~Ga~~~i~ 715 (740)
....++|++=.+..+.+.... + ...|+|.|-.
T Consensus 810 -~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 810 -RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred -cCCCceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 334566664444333333322 1 1238887765
No 410
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=24.04 E-value=1.2e+02 Score=31.85 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=49.1
Q ss_pred CCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCC
Q 004636 610 FPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGI 668 (740)
Q Consensus 610 ~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~ 668 (740)
+.|.++.||--....-+-+..+|...++.|+.+.+...-+....+..|+++.-+.-|++
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~ 212 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHF 212 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccc
Confidence 45678999999999999999999999999999988765566556677999999988875
No 411
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=24.00 E-value=2.9e+02 Score=31.20 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=62.5
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEE
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II 691 (740)
+.+++||-|.+. ++.++++.+.......-.-+.++..+.+. ..|+.++=.. .+.=|+-+++.+ . ...|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~-~aDv~V~pS~-~E~~g~~vlEAm------A-~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYA-SGDVFVMPSE-SETLGFVVLEAM------A-SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHH-HCCEEEECCc-ccccCcHHHHHH------H-cCCCEE
Confidence 457888877654 44455555533222222234455555543 3577665322 222344444433 1 224566
Q ss_pred EEecCCCHHHHHHHHHc---CCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 692 ALTGSTDNLTKDNCMRV---GMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 692 ~lt~~~~~~~~~~~l~~---Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
+ |..... .+..+. |-++++..|-+.+++.+.+..+++.+.
T Consensus 360 ~-s~~gg~---~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 360 A-ARAGGI---PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPE 402 (465)
T ss_pred E-cCCCCc---HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 4 333222 234455 899999999999999999999887654
No 412
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=23.95 E-value=2.7e+02 Score=23.38 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=40.6
Q ss_pred hHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeeeecHHHHHHHHHHHH
Q 004636 351 MNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLI 430 (740)
Q Consensus 351 iSHELRtPL~~I~g~~~lL~~~~l~~~~~~~l~~i~~~~~~l~~lI~~lLd~srle~g~~~l~~~~~~l~~li~~~~~~~ 430 (740)
+.|-+||-|+.|.+++..-.+...+.+. +.+.+..-..-|. -..+++. + -..+.++|.++++..+.-+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~~~--~~~~~~~Rl~ALa-~a~~ll~--~-------~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASVEE--FAEAFSGRLQALA-RAHDLLS--R-------SDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCHHH--HHHHHHHHHHHHH-HHHHHHh--c-------CCCCCccHHHHHHHHHHhc
Confidence 5799999999999998887655444332 2222221111111 1122211 1 1234789999999998876
Q ss_pred hh
Q 004636 431 KP 432 (740)
Q Consensus 431 ~~ 432 (740)
..
T Consensus 70 ~~ 71 (83)
T PF07536_consen 70 GS 71 (83)
T ss_pred cC
Confidence 64
No 413
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.92 E-value=6.4e+02 Score=25.91 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcC-CCeEEE------CCCCHHHHHHHHH
Q 004636 665 VPGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVG-MDGVIL------KPVSLEKMRSVLS 728 (740)
Q Consensus 665 mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~G-a~~~i~------KP~~~~~L~~~l~ 728 (740)
+++.| +++++++++. ...|||+..+-.+.++..++++.| +++.+. +-++.+++.+.++
T Consensus 183 ~~g~~-~~~~~~i~~~-----~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 183 KSGYD-LELTKAVSEA-----VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred CCCCC-HHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 44443 6888887642 235688888889999999999988 999554 5577777766655
No 414
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=23.89 E-value=1.1e+02 Score=30.15 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=35.1
Q ss_pred EEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHH-CCCCeEEEEe
Q 004636 615 VLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMD 662 (740)
Q Consensus 615 ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlvl~D 662 (740)
||+||.....---+.++|++.|+++.+..+-+.-++.+ ...||.||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEc
Confidence 89999999998889999999999988876643122222 3467766664
No 415
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=23.81 E-value=4.8e+02 Score=25.38 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=46.4
Q ss_pred hhhhhHHHHHHHhhHhHH---HHhHhhhcCCCchHHHHHHHHHHHHHhhHHHHH--HHHhcccchhHHHHHHHHHHHHHH
Q 004636 21 QYISDFFIALAYFSIPLE---LIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLI--NLWTFNMHSRTVAIVMTTAKVLTA 95 (740)
Q Consensus 21 ~~~sd~~i~~~y~~i~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~--~~~~~~~~~~~~~~~~~~~k~~ta 95 (740)
...+|...|.+-+-+-.. +..++++|+-=+..|+- ++.-++++|.|=++ +.|-.|-|. ++..+.|
T Consensus 17 y~~~~i~~At~~~i~~~~~~v~~~~~~~r~v~~~~~is--~~lv~vfG~lTl~~~d~~fik~KpT--------ii~~l~a 86 (176)
T PF04279_consen 17 YKTYGIFVATAVLIVATLAQVAYSWIRRRKVPKMQWIS--LVLVLVFGGLTLLFHDPRFIKWKPT--------IINWLFA 86 (176)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHhCcCchhHHHH--HHHHHHHHHHHHHhCCcceeehhHH--------HHHHHHH
Confidence 345666666554433322 22223444322233332 22334456676665 345556653 4566666
Q ss_pred HHHHHHHHH-----HHHHhhhhhccccHH
Q 004636 96 VVSCATALM-----LVHIIPDLLSVKTRE 119 (740)
Q Consensus 96 ~~s~~ta~~-----l~~~~p~~~~~~~~~ 119 (740)
++-+.+.+. +=+++.+.+.+|.+.
T Consensus 87 ~~ll~s~~~~~k~ll~~ll~~~~~L~~~~ 115 (176)
T PF04279_consen 87 AVLLGSLLFGKKPLLKRLLGKQLPLPDRG 115 (176)
T ss_pred HHHHHHHHhcCCcHHHHHHHHhCCCCHHH
Confidence 777777666 666777777777543
No 416
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.79 E-value=6.9e+02 Score=26.51 Aligned_cols=99 Identities=14% Similarity=0.250 Sum_probs=57.7
Q ss_pred eEEee--cCchH---HHHHHHHHHHhcCCeEEEeCCHHHHH----------HHHCCCCeEEEEecCCCCCCHHHHHHHHH
Q 004636 614 KVLVM--DENGV---SRSVTKGLLLHLGCDVMTVSSVEECF----------RVVSHEHQVVFMDVCVPGIDGYEVAVHIH 678 (740)
Q Consensus 614 ~ILIv--dD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal----------~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir 678 (740)
+|.|+ .+.+. ..+.+.+.|++.|+++.......+.+ ..+...+|+|+. =+.||. +++..|
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 80 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAAR 80 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHHH
Confidence 46665 33333 33455666777899887654322211 112234677765 266773 223332
Q ss_pred HhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 679 DKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 679 ~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
. . ....+||+.+.. |=-+|++ .++++++.+.+.+++++.
T Consensus 81 ~-~--~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 81 A-L--ARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred H-h--cCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 2 1 234567876543 5566775 789999999999998764
No 417
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=23.76 E-value=5.3e+02 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.490 Sum_probs=14.1
Q ss_pred HHhHhhhcCC-CchHHHHHHHHHHHHHhh
Q 004636 39 LIYFVKKSAV-FPYRWVLVQFGAFIVLCG 66 (740)
Q Consensus 39 ~~~~~~~~~~-~~~~~~~~~~~~f~~~cg 66 (740)
+++.+||++- ..+...++.++.+.+.++
T Consensus 19 ii~~vr~~~l~~~~~l~Wl~~~i~~l~~~ 47 (115)
T PF10066_consen 19 IIRLVRKRKLRLKYSLLWLVFSIILLILS 47 (115)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 4455666653 344444444454555554
No 418
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=23.58 E-value=9.5e+02 Score=25.90 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=57.4
Q ss_pred eEEeecCc----hHHHHHHHHHHHhcCCeEEE---eCCHHHHHHHHCCCCeEEEEecCCC-----------CCC--HHHH
Q 004636 614 KVLVMDEN----GVSRSVTKGLLLHLGCDVMT---VSSVEECFRVVSHEHQVVFMDVCVP-----------GID--GYEV 673 (740)
Q Consensus 614 ~ILIvdD~----~~~~~~l~~~L~~~g~~v~~---a~~g~eal~~~~~~~dlvl~D~~mp-----------~~d--G~e~ 673 (740)
.++++|-- ....+.++.+-+....-.+. +.+.+.|..+.....|.|.+.+.-- +.. +++.
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~a 189 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAA 189 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHH
Confidence 46666651 33333444433333322222 3467777777766667666442110 112 3456
Q ss_pred HHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 674 AVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 674 ~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
+..+++. ...|||+-.+-....+..+|+.+|||.+..
T Consensus 190 i~ev~~a-----~~~pVIadGGIr~~~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 190 LRWCAKA-----ARKPIIADGGIRTHGDIAKSIRFGASMVMI 226 (321)
T ss_pred HHHHHHh-----cCCeEEEECCcCcHHHHHHHHHcCCCEEee
Confidence 6666532 236799999999999999999999998765
No 419
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.57 E-value=7.5e+02 Score=26.30 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=57.8
Q ss_pred eEEee--cCchHHH---HHHHHHHHhcCCeEEEeCCHHH---HH------------HHHCCCCeEEEEecCCCCCCHHHH
Q 004636 614 KVLVM--DENGVSR---SVTKGLLLHLGCDVMTVSSVEE---CF------------RVVSHEHQVVFMDVCVPGIDGYEV 673 (740)
Q Consensus 614 ~ILIv--dD~~~~~---~~l~~~L~~~g~~v~~a~~g~e---al------------~~~~~~~dlvl~D~~mp~~dG~e~ 673 (740)
+|+|+ -+.+... ..+...|++.|+++..-..... .. ..+...+|+|+. =+.||. +
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~ 81 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDGT-F 81 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcHH-H
Confidence 46666 3334333 3445566778988876432111 11 111224577665 367884 3
Q ss_pred HHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 674 AVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 674 ~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
++..|.. ....+||+.+. .|=-+|++ .++++++.+.+.++++++
T Consensus 82 L~aa~~~---~~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 82 LSVAREI---APRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred HHHHHHh---cccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcCC
Confidence 3333322 12356788765 36678888 589999999999998775
No 420
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=23.40 E-value=2.6e+02 Score=28.66 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHh--hHHHHHHHHHhhcccchhHHHHHH
Q 004636 118 RELFLKNKAAELDREMGLIRTQEET--GRHVRMLTHEIRSTLDRHTILKTT 166 (740)
Q Consensus 118 ~~ll~~~~a~~l~~e~~~~~~~~~~--~~~l~~lt~~i~~sld~~~il~t~ 166 (740)
.+.+-..++.|+++|++.+..+... .+|.+.+++-=-.-.|+|.+-+-.
T Consensus 162 ~~~L~~~LNnrlE~eV~~i~~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~ 212 (237)
T PF13748_consen 162 NYRLYRRLNNRLEKEVDIIERRKPASLRRHYRRLSRLRIRLSDREALGYLL 212 (237)
T ss_pred HHHHHHHHhHHHHHHccHhhcCChHHHHHHHHHHHhhhhhhchHHHHHHHH
Confidence 5677788899999999988766544 355444433211234666654433
No 421
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=23.19 E-value=6.4e+02 Score=23.80 Aligned_cols=35 Identities=9% Similarity=-0.114 Sum_probs=18.3
Q ss_pred hcCCCchHHHHHHHHHHHHHhhHHHHHHHHhcccc
Q 004636 45 KSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMH 79 (740)
Q Consensus 45 ~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~ 79 (740)
+.+....++..+.+..-.++|...+-+-.+.++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 127 (172)
T PF12822_consen 93 KLKKKSKKRIIIAIIIAGVLGTLVNTLLNLGIIYP 127 (172)
T ss_dssp --SS-SHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455556666666666666666555555443
No 422
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=23.17 E-value=7.7e+02 Score=28.32 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=57.9
Q ss_pred eEEee--cCchHHHHHH---HHHHH-hcCCeEEEeCCHHHHHH----------------H---HCCCCeEEEEecCCCCC
Q 004636 614 KVLVM--DENGVSRSVT---KGLLL-HLGCDVMTVSSVEECFR----------------V---VSHEHQVVFMDVCVPGI 668 (740)
Q Consensus 614 ~ILIv--dD~~~~~~~l---~~~L~-~~g~~v~~a~~g~eal~----------------~---~~~~~dlvl~D~~mp~~ 668 (740)
+|+|| -+++...+.+ ..+|+ ..|+.+..-.+....+. . +...+|+||. =+.
T Consensus 196 ~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iGG 271 (508)
T PLN02935 196 TVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LGG 271 (508)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----ECC
Confidence 57776 4444444443 44455 46788776543222110 0 1124566665 367
Q ss_pred CHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 669 DGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 669 dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
||. +++..|. . ....+||+.+ ..|=-+|++ +++++++.+.|.++++++
T Consensus 272 DGT-lL~Aar~-~--~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 272 DGT-VLWAASM-F--KGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cHH-HHHHHHH-h--ccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCC
Confidence 884 3344432 2 2345678765 357778885 799999999999998775
No 423
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.06 E-value=5.2e+02 Score=24.44 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=48.3
Q ss_pred CceEEeecCchHHH---HHHHHHHHhcCCeEEEeC---CHHHHH----HH-HCCCCeEEEEecCCCCCCH--HHHHHHHH
Q 004636 612 GLKVLVMDENGVSR---SVTKGLLLHLGCDVMTVS---SVEECF----RV-VSHEHQVVFMDVCVPGIDG--YEVAVHIH 678 (740)
Q Consensus 612 ~~~ILIvdD~~~~~---~~l~~~L~~~g~~v~~a~---~g~eal----~~-~~~~~dlvl~D~~mp~~dG--~e~~~~Ir 678 (740)
+.+|+++|-|.... +.+....++.|..+.... +..+.+ .. ....+|+||+|. |+... -+.++.++
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiDt--~g~~~~~~~~l~~l~ 105 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVIVDT--AGRLQIDENLMEELK 105 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEEC--cccchhhHHHHHHHH
Confidence 45788887664322 223333445566555443 333222 22 245789999987 33321 23344443
Q ss_pred HhhccCCCCceEEEEecCCCHHHHHHHH----HcCCCeEEE
Q 004636 679 DKFTRRHERPLIVALTGSTDNLTKDNCM----RVGMDGVIL 715 (740)
Q Consensus 679 ~~~~~~~~~~~II~lt~~~~~~~~~~~l----~~Ga~~~i~ 715 (740)
.......+.-.++++.+....+....+. ..|.++.+.
T Consensus 106 ~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~vil 146 (173)
T cd03115 106 KIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVIL 146 (173)
T ss_pred HHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEE
Confidence 3222122333455566654443322222 246666544
No 424
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.03 E-value=6.7e+02 Score=26.79 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCeEEEeCCHHHHH-------------------HHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCC
Q 004636 625 RSVTKGLLLHLGCDVMTVSSVEECF-------------------RVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 625 ~~~l~~~L~~~g~~v~~a~~g~eal-------------------~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~ 685 (740)
...+...|++.|+++....+..+.+ ..+....|+|++ =+.||- +++..|.. ..
T Consensus 19 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDGT-lL~aar~~---~~ 90 (305)
T PRK02649 19 AEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGDGT-VLSAARQL---AP 90 (305)
T ss_pred HHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCcHH-HHHHHHHh---cC
Confidence 3455666778899887655432221 111224576665 366883 44444432 23
Q ss_pred CCceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHccc
Q 004636 686 ERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 686 ~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~ 734 (740)
..+||+.+. .|=-+|++ .++++++.+.+.++++++
T Consensus 91 ~~iPilGIN-------------~G~lGFLt-~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 91 CGIPLLTIN-------------TGHLGFLT-EAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CCCcEEEEe-------------CCCCcccc-cCCHHHHHHHHHHHHcCC
Confidence 456788654 26677887 478899999999998775
No 425
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.95 E-value=1.6e+02 Score=30.98 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCC
Q 004636 610 FPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPG 667 (740)
Q Consensus 610 ~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~ 667 (740)
+.|.+|.|++......+-+..+|...|+.|.++.+-..-+.......|+|+.-+.-|.
T Consensus 150 l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~ 207 (279)
T PRK14178 150 IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAG 207 (279)
T ss_pred CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCccc
Confidence 4677999999999999999999998999998876655545544457899999885553
No 426
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.93 E-value=1.1e+03 Score=26.53 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=5.6
Q ss_pred CCCCHHHHHHH
Q 004636 716 KPVSLEKMRSV 726 (740)
Q Consensus 716 KP~~~~~L~~~ 726 (740)
.||+++.+...
T Consensus 275 e~f~~~~~~~~ 285 (437)
T PRK00771 275 ERFDPDRFISR 285 (437)
T ss_pred CcCCHHHHHHH
Confidence 35555555443
No 427
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=22.88 E-value=42 Score=33.05 Aligned_cols=32 Identities=6% Similarity=0.177 Sum_probs=27.2
Q ss_pred HHHHHHHHhhHHHHHHH-HhcccchhHHHHHHH
Q 004636 57 QFGAFIVLCGATHLINL-WTFNMHSRTVAIVMT 88 (740)
Q Consensus 57 ~~~~f~~~cg~~h~~~~-~~~~~~~~~~~~~~~ 88 (740)
-|++|+++|-++-++.+ ++-|+.+|++.|-..
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~ 38 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPD 38 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCC
Confidence 48899999999999987 778998998888754
No 428
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=22.76 E-value=1.7e+02 Score=29.90 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=38.1
Q ss_pred ceeccHHHHHHHHHHHHHHHhhcCCCCe-EEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCc-----C
Q 004636 452 YAVGDEKRLMQTLLNVVGNAVKFTKEGN-ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISP-----Q 525 (740)
Q Consensus 452 ~v~~D~~~L~qVl~NLl~NAik~t~~g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~-----e 525 (740)
++.|||.|..++-. +++|+.+-+.... .+.+.... .-.+.|.-+|+|.|. |
T Consensus 21 ilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~----------------------g~~v~v~StGIGgPSaaIAvE 77 (248)
T COG2820 21 ILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYN----------------------GKPVTVCSTGIGGPSAAIAVE 77 (248)
T ss_pred EecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEc----------------------CeEEEEEecCCCCchHHHHHH
Confidence 34699999999777 9999988765432 22222221 135889999999887 4
Q ss_pred Chhhh
Q 004636 526 DIPNL 530 (740)
Q Consensus 526 ~l~~i 530 (740)
++.++
T Consensus 78 EL~~l 82 (248)
T COG2820 78 ELARL 82 (248)
T ss_pred HHHhc
Confidence 45554
No 429
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=22.38 E-value=2.2e+02 Score=30.08 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=65.7
Q ss_pred eEEeecCchHHHHHHHHHHHhcCCeEEEeC------CHHHHHHHHCC---------CC---eEEEEecCCCCCCHHHHHH
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVS------SVEECFRVVSH---------EH---QVVFMDVCVPGIDGYEVAV 675 (740)
Q Consensus 614 ~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~------~g~eal~~~~~---------~~---dlvl~D~~mp~~dG~e~~~ 675 (740)
+++++-|-...-+.++.. ..|+..+... |..||++.++. .+ .+-... -....++++++
T Consensus 121 ~~~fmad~~~l~EAlrai--~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a--~~~~~~~elL~ 196 (293)
T PRK04180 121 TVPFVCGARNLGEALRRI--AEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAA--KELQAPYELVK 196 (293)
T ss_pred CCCEEccCCCHHHHHHHH--HCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhc--cccCCCHHHHH
Confidence 567777776666666553 3466655333 45566553320 11 000000 00124688888
Q ss_pred HHHHhhccCCCCceEE--EEecCCCHHHHHHHHHcCCCeEEE-----CCCCHHHHHHHHHHHHc
Q 004636 676 HIHDKFTRRHERPLIV--ALTGSTDNLTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 676 ~Ir~~~~~~~~~~~II--~lt~~~~~~~~~~~l~~Ga~~~i~-----KP~~~~~L~~~l~~~l~ 732 (740)
++++.. . .||| +..+-..+++...+++.|++++.. |.-++.+....+.+.+.
T Consensus 197 ei~~~~----~-iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 197 EVAELG----R-LPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred HHHHhC----C-CCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 886532 2 4565 777777999999999999999753 55577777776666553
No 430
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=22.35 E-value=2.8e+02 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=21.0
Q ss_pred HHHHhhHhHHHHhHhhhcCCCchHHHHHHHH
Q 004636 29 ALAYFSIPLELIYFVKKSAVFPYRWVLVQFG 59 (740)
Q Consensus 29 ~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~ 59 (740)
-+++|.||.+.-+|...-- +.|.|+.=+|-
T Consensus 158 ~l~~~~ip~~~gff~l~~~-i~~~~~~~i~n 187 (952)
T TIGR02921 158 LLAFFAIPAAAGFFELLEE-IEFEHLGDIFN 187 (952)
T ss_pred HHHHHhhhHHhHHHHHHHH-HHHHhHHHHHH
Confidence 3688999999888765543 56777655444
No 431
>COG4420 Predicted membrane protein [Function unknown]
Probab=22.20 E-value=7.6e+02 Score=24.32 Aligned_cols=9 Identities=0% Similarity=0.032 Sum_probs=5.6
Q ss_pred chhHHHHHH
Q 004636 79 HSRTVAIVM 87 (740)
Q Consensus 79 ~~~~~~~~~ 87 (740)
..||..|+-
T Consensus 85 DpyPFi~Ln 93 (191)
T COG4420 85 DPYPFILLN 93 (191)
T ss_pred CCccHHHHH
Confidence 346777665
No 432
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=22.18 E-value=5e+02 Score=25.87 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=60.8
Q ss_pred hhHHhhhhhHHHHHHHhhHhHHHHhHhh-hcCCCchHHHHHH----HHHHHHHhhHHHHHHHHhc--ccchhHHHHHHHH
Q 004636 17 LMKYQYISDFFIALAYFSIPLELIYFVK-KSAVFPYRWVLVQ----FGAFIVLCGATHLINLWTF--NMHSRTVAIVMTT 89 (740)
Q Consensus 17 ~~~~~~~sd~~i~~~y~~i~~~~~~~~~-~~~~~~~~~~~~~----~~~f~~~cg~~h~~~~~~~--~~~~~~~~~~~~~ 89 (740)
..-.|++|=++.|+-|..-+-.-..-+. =-.|+||.|++-- .+.++++|=.-|++-.+-+ +-..+...|++|+
T Consensus 32 ~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~~pre~~W~~G~ 111 (200)
T cd00284 32 CLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKPRELTWVIGV 111 (200)
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3467899999988888765432222222 2368999998764 3668888999999977543 2223467899987
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004636 90 AKVLTAVVSCATALMLVH 107 (740)
Q Consensus 90 ~k~~ta~~s~~ta~~l~~ 107 (740)
+-.+-.++...|...|.+
T Consensus 112 ~l~~l~~~~af~GY~Lpw 129 (200)
T cd00284 112 ILLLLTMATAFMGYVLPW 129 (200)
T ss_pred HHHHHHHHHHHcccccCc
Confidence 777666666666665543
No 433
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=22.13 E-value=1.8e+02 Score=30.45 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=38.6
Q ss_pred CCCCceEEeecCchHHHHHH---HHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEec
Q 004636 609 NFPGLKVLVMDENGVSRSVT---KGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDV 663 (740)
Q Consensus 609 ~~~~~~ILIvdD~~~~~~~l---~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~ 663 (740)
..++.+||||-|.+..+.-+ +..+++.....+-++.+.+.+....-+|++|+=|.
T Consensus 177 ~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD~l~~~GykP~lIvGdp 234 (395)
T COG4825 177 DLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRKAGYKPQLIVGDP 234 (395)
T ss_pred hhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHHHHHHcCCCcceeecCc
Confidence 45788999998888776554 55565544444456666777766667899998874
No 434
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.12 E-value=2.8e+02 Score=28.98 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhccCCCCceEEEEecC------CCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcc
Q 004636 669 DGYEVAVHIHDKFTRRHERPLIVALTGS------TDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 669 dG~e~~~~Ir~~~~~~~~~~~II~lt~~------~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~ 733 (740)
+.++.++++| .....|++++|-. ..+....+|.++|+|+++.--...++..+....+-+.
T Consensus 78 ~~~~~~~~~r-----~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~ 143 (263)
T CHL00200 78 KILSILSEVN-----GEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLY 143 (263)
T ss_pred HHHHHHHHHh-----cCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHc
No 435
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.06 E-value=1.8e+02 Score=28.80 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=35.6
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFM 661 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~ 661 (740)
++|+|+|-.-.+...+.+.|++.|+++....+..+. ..+|.|++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEI-----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHH-----ccCCEEEE
Confidence 479999999999999999999999999988764321 36787776
No 436
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.02 E-value=1.8e+02 Score=27.81 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=28.0
Q ss_pred HHhhhhhHHHHHHHhhHhHHHHhHhh-hcCCCchHH--HHHHHHHHHHHhhH
Q 004636 19 KYQYISDFFIALAYFSIPLELIYFVK-KSAVFPYRW--VLVQFGAFIVLCGA 67 (740)
Q Consensus 19 ~~~~~sd~~i~~~y~~i~~~~~~~~~-~~~~~~~~~--~~~~~~~f~~~cg~ 67 (740)
.-|..+|.=+++.|.|+-++.+-|.. +.-.+|-.. +..+.++|.++.|+
T Consensus 21 e~~~l~d~kL~lg~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~i 72 (162)
T PF06703_consen 21 ESHTLTDIKLALGYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGI 72 (162)
T ss_pred eEEEEEcHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHH
Confidence 34566888888888888777665554 333344333 33333445555443
No 437
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.01 E-value=3.1e+02 Score=31.07 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=65.4
Q ss_pred CceEEeecC---chHHHHHHHHHHHhcCC--eEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCC
Q 004636 612 GLKVLVMDE---NGVSRSVTKGLLLHLGC--DVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHE 686 (740)
Q Consensus 612 ~~~ILIvdD---~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~ 686 (740)
+.+++|+-+ ++...+.++++.++.|. +|.... ..+..+.+ ...|++++-... +.-|.-+++.+ . .
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l-~~aDv~vlpS~~-Eg~p~~vlEAm------a-~ 393 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYL-PKLDVLVLTSIS-EGQPLVILEAM------A-A 393 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHH-HhCCEEEeCchh-hcCChHHHHHH------H-c
Confidence 456777743 34556667777777765 344444 33333333 246887765432 33355555443 1 2
Q ss_pred CceEEEEecCCCHHHHHHHHHc------CCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 687 RPLIVALTGSTDNLTKDNCMRV------GMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 687 ~~~II~lt~~~~~~~~~~~l~~------Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
..|||+ |..... .+..+. |..+++..|-+.+++.+.+.+++..+.
T Consensus 394 G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 394 GIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPE 444 (475)
T ss_pred CCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHH
Confidence 244664 443332 233333 778999999999999999999887643
No 438
>PF09858 DUF2085: Predicted membrane protein (DUF2085); InterPro: IPR019206 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.97 E-value=3.2e+02 Score=23.64 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=30.1
Q ss_pred hHHHHHHHhhHhHHHHhH--hhhcCCCchHHHHHHHHHHHHHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 004636 25 DFFIALAYFSIPLELIYF--VKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSC 99 (740)
Q Consensus 25 d~~i~~~y~~i~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~ta~~s~ 99 (740)
+..|-+.|+. .++++ .|++...+-.|+.+++..-..+=|.||++. |+.+... .+.+|.+.+=
T Consensus 23 CtGiy~G~~~---~~~~~~~~r~~~~~~~~~~~~l~~lpm~iDg~~q~~~----~~es~N~------lR~iTG~l~G 86 (93)
T PF09858_consen 23 CTGIYLGLLI---GLLLFYLGRIRLPPLSIWLALLLLLPMAIDGFTQLFG----WRESNNL------LRLITGLLFG 86 (93)
T ss_pred hHHHHHHHHH---HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHhce----eccCCCh------hHHHhhHHHH
Confidence 3445455554 33443 332222223333344444556778888887 3333222 3666666543
No 439
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.78 E-value=8.8e+02 Score=27.28 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=6.3
Q ss_pred CCCCHHHHHHHH
Q 004636 716 KPVSLEKMRSVL 727 (740)
Q Consensus 716 KP~~~~~L~~~l 727 (740)
.||+++.+...|
T Consensus 282 ~~f~p~~~~~~i 293 (428)
T TIGR00959 282 EPFHPERMASRI 293 (428)
T ss_pred ccCCHHHHHHHH
Confidence 456666554443
No 440
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=21.74 E-value=3e+02 Score=23.59 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=27.3
Q ss_pred hHHHHHHHhhHhHHHHhH--hhhcCCC--chHH-HHHHHHHHHHHhhHHHHHHH
Q 004636 25 DFFIALAYFSIPLELIYF--VKKSAVF--PYRW-VLVQFGAFIVLCGATHLINL 73 (740)
Q Consensus 25 d~~i~~~y~~i~~~~~~~--~~~~~~~--~~~~-~~~~~~~f~~~cg~~h~~~~ 73 (740)
=++..+.||+.|+...|. +--.+-. +..| +.+-++.|++.++.|.+.--
T Consensus 22 ~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~ 75 (91)
T PF04341_consen 22 SAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVR 75 (91)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888776665 1222222 3444 44556666666666654433
No 441
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=21.47 E-value=1.2e+02 Score=36.52 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCeEEEEEEEecccccccCCCCCCcCCCCCCceEEEEEEEecCCCCCcCCh
Q 004636 457 EKRLMQTLLNVVGNAVK-FTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDI 527 (740)
Q Consensus 457 ~~~L~qVl~NLl~NAik-~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~l 527 (740)
..-|.+|+..++.||.. -.+.+.-++.+...... -.|+|.|+|.|||-+..
T Consensus 51 ~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~--------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 51 VPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK--------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred CCcHHHHHHHHhhcccccccCCCcceeEEEEccCC--------------------CEEEEEeCCCcceeeec
Confidence 34578899999999988 22233222222222111 36899999999987665
No 442
>COG3952 Predicted membrane protein [Function unknown]
Probab=21.28 E-value=1.5e+02 Score=26.03 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=24.3
Q ss_pred HHhhhhhHHHHHHHhhHhHHHHhHhhhc---CCCchHHHHHHHH
Q 004636 19 KYQYISDFFIALAYFSIPLELIYFVKKS---AVFPYRWVLVQFG 59 (740)
Q Consensus 19 ~~~~~sd~~i~~~y~~i~~~~~~~~~~~---~~~~~~~~~~~~~ 59 (740)
.||++ ..++...|+.=..+=+|..++ +++| -.||-|+
T Consensus 25 ~W~Li--G~~g~~lFt~Rf~VQw~~se~a~rsv~P--~~FW~~s 64 (113)
T COG3952 25 SWKLI--GFSGQLLFTGRFVVQWLASEHANRSVIP--VLFWYFS 64 (113)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCcch--HHHHHHH
Confidence 45554 367888999998888887654 4444 4455444
No 443
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.18 E-value=5.3e+02 Score=26.32 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=59.9
Q ss_pred HHHHHhcCCeEEEeCCH---HHHHHHHCCCCe-EEEEecCCCCCCHHHHHH----HHH---HhhccCCCCceEEEEecCC
Q 004636 629 KGLLLHLGCDVMTVSSV---EECFRVVSHEHQ-VVFMDVCVPGIDGYEVAV----HIH---DKFTRRHERPLIVALTGST 697 (740)
Q Consensus 629 ~~~L~~~g~~v~~a~~g---~eal~~~~~~~d-lvl~D~~mp~~dG~e~~~----~Ir---~~~~~~~~~~~II~lt~~~ 697 (740)
-..+++.|..+-.|=|. -+.++-+-...| +.+|-++ |+..|-.+.. +|+ +....... ...|-+-+..
T Consensus 101 i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~-PGf~GQ~fi~~~l~KI~~lr~~~~~~~~-~~~IeVDGGI 178 (229)
T PRK09722 101 IDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVD-PGFAGQPFIPEMLDKIAELKALRERNGL-EYLIEVDGSC 178 (229)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEc-CCCcchhccHHHHHHHHHHHHHHHhcCC-CeEEEEECCC
Confidence 35567778877655332 333432223445 4556665 8888855543 443 32222222 2356778888
Q ss_pred CHHHHHHHHHcCCCeEEEC-------CCCHHHHHHHHHHHH
Q 004636 698 DNLTKDNCMRVGMDGVILK-------PVSLEKMRSVLSDLL 731 (740)
Q Consensus 698 ~~~~~~~~l~~Ga~~~i~K-------P~~~~~L~~~l~~~l 731 (740)
+.+...++.++|||-++.= .-++.+..+.+++.+
T Consensus 179 ~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~ 219 (229)
T PRK09722 179 NQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQI 219 (229)
T ss_pred CHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHH
Confidence 8899999999999966533 334566666666544
No 444
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.02 E-value=4.5e+02 Score=26.47 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=49.5
Q ss_pred EeCCHHHHHHHHCCCCeEEEEecCC-------CCCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeE
Q 004636 641 TVSSVEECFRVVSHEHQVVFMDVCV-------PGIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGV 713 (740)
Q Consensus 641 ~a~~g~eal~~~~~~~dlvl~D~~m-------p~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~ 713 (740)
.+.|.+|+.++....+|.|.+.--. +.-.|++.++.+++. ...|++++.+ .+.+.....+++|+++.
T Consensus 110 S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~-----~~iP~vAIGG-i~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 110 STHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIREL-----VNIPVVAIGG-INLENVPEVLEAGADGV 183 (211)
T ss_pred ecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHh-----CCCCEEEEcC-CCHHHHHHHHHhCCCeE
Confidence 5568899888876668998887543 345789999888643 2256887765 45667888999999985
No 445
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=21.00 E-value=2.9e+02 Score=31.80 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=39.0
Q ss_pred HHCCCCeEEEEecCCCCCCH--HHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeEEE
Q 004636 651 VVSHEHQVVFMDVCVPGIDG--YEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVIL 715 (740)
Q Consensus 651 ~~~~~~dlvl~D~~mp~~dG--~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~i~ 715 (740)
++....|+|.+|.. .+-+- ++.+++||+. .+..+|| ...-...++...+.++|||....
T Consensus 256 l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~~----~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 256 LVKAGVDVVVLDSS-QGDSIYQLEMIKYIKKT----YPELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHcCCCEEEEeCC-CCCcHHHHHHHHHHHHh----CCCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 34557899999983 12222 3677777653 3344455 34456788899999999998754
No 446
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.96 E-value=5.8e+02 Score=27.79 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=58.0
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEE
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~ 692 (740)
.+|=|-+|.....+..+ +++..|+...++..-.-..+-. .+|-.| ++.++.||+.. +..|||+
T Consensus 146 ~KIRI~~d~~kTvd~ak-~~e~aG~~~ltVHGRtr~~kg~-----------~~~pad-~~~i~~v~~~~----~~ipvia 208 (358)
T KOG2335|consen 146 VKIRIFVDLEKTVDYAK-MLEDAGVSLLTVHGRTREQKGL-----------KTGPAD-WEAIKAVRENV----PDIPVIA 208 (358)
T ss_pred EEEEecCcHHHHHHHHH-HHHhCCCcEEEEecccHHhcCC-----------CCCCcC-HHHHHHHHHhC----cCCcEEe
Confidence 45666678888877765 6677798887776533222211 233333 78888887543 3367886
Q ss_pred EecCCCHHHHHHHHH-cCCCeEEE
Q 004636 693 LTGSTDNLTKDNCMR-VGMDGVIL 715 (740)
Q Consensus 693 lt~~~~~~~~~~~l~-~Ga~~~i~ 715 (740)
=..-...++..+|++ .|+|++++
T Consensus 209 NGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 209 NGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred eCCcCcHHHHHHHHHHhCCceEEe
Confidence 666677788999998 89999886
No 447
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=20.95 E-value=3.7e+02 Score=25.03 Aligned_cols=110 Identities=12% Similarity=0.221 Sum_probs=63.2
Q ss_pred CceEEeecCchHHHHHHHHHHHhcCC--eEEEeCCH--HHHHHHHCCCCeEEEEecCCCCCCHHHHHHHHHHhhccCCCC
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGC--DVMTVSSV--EECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHER 687 (740)
Q Consensus 612 ~~~ILIvdD~~~~~~~l~~~L~~~g~--~v~~a~~g--~eal~~~~~~~dlvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~ 687 (740)
..++.|+.+.+... .+....+..+. .+...... .+..+++.. .|+++.=... +.-|..+++.+- ..
T Consensus 47 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~-~di~v~~s~~-e~~~~~~~Ea~~-------~g 116 (172)
T PF00534_consen 47 NYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS-SDIFVSPSRN-EGFGLSLLEAMA-------CG 116 (172)
T ss_dssp TEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH-TSEEEE-BSS-BSS-HHHHHHHH-------TT
T ss_pred CeEEEEEccccccc-cccccccccccccccccccccccccccccccc-ceeccccccc-cccccccccccc-------cc
Confidence 35677777443333 34455555454 34444433 344444433 5766664444 334555554441 22
Q ss_pred ceEEEEecCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHHcccc
Q 004636 688 PLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 688 ~~II~lt~~~~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~l~~~~ 735 (740)
.|+| ++... ...+.+..|..+++..|.+.+++.+.+.+++...+
T Consensus 117 ~pvI-~~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 117 CPVI-ASDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp -EEE-EESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHH
T ss_pred ccee-ecccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCHH
Confidence 3455 34422 23456778889999999999999999999987653
No 448
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=20.79 E-value=5.9e+02 Score=24.13 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=17.6
Q ss_pred hhHHHHHHHhhHhHHHHhH-hhhcCCCch
Q 004636 24 SDFFIALAYFSIPLELIYF-VKKSAVFPY 51 (740)
Q Consensus 24 sd~~i~~~y~~i~~~~~~~-~~~~~~~~~ 51 (740)
+|+.+|++- ++|..++++ ..+|++.|.
T Consensus 54 ~~f~lgL~~-g~Pall~~~l~~~R~~~~~ 81 (149)
T PF11143_consen 54 SDFYLGLAA-GLPALLLMLLSGRRHRSPR 81 (149)
T ss_pred hHHHHHHHH-hHHHHHHHHHHccCCCCch
Confidence 667777764 566666665 457777776
No 449
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=20.76 E-value=2.2e+02 Score=22.30 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHHHHhhHhHHHHhHhhhc-CCCchHHHHHHHH
Q 004636 27 FIALAYFSIPLELIYFVKKS-AVFPYRWVLVQFG 59 (740)
Q Consensus 27 ~i~~~y~~i~~~~~~~~~~~-~~~~~~~~~~~~~ 59 (740)
+.++....|...++||.|.+ +.--++++..+++
T Consensus 6 ~~~iglMfisv~~i~~sR~Klk~~~lk~i~~~vA 39 (58)
T PF10966_consen 6 FGAIGLMFISVILIYFSRYKLKGKFLKFIVSLVA 39 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 55666777888899999855 4435666655443
No 450
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=20.67 E-value=5.9e+02 Score=27.10 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=42.0
Q ss_pred ceEEeecCchHHHHHHHHHHHhcCCe-EE-EeCCHHHHHHHHCCCCeEEEEecCCCCCCH--HHHHHHHH
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCD-VM-TVSSVEECFRVVSHEHQVVFMDVCVPGIDG--YEVAVHIH 678 (740)
Q Consensus 613 ~~ILIvdD~~~~~~~l~~~L~~~g~~-v~-~a~~g~eal~~~~~~~dlvl~D~~mp~~dG--~e~~~~Ir 678 (740)
.+|.-+|-++...+..++-.+..|.. +. ...|..+........+|+|++|- | -.| -++++.|.
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP--P-r~G~~~~~~~~l~ 262 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP--P-RRGIGKELCDYLS 262 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC--C-CCCccHHHHHHHH
Confidence 47899999999998888887777753 33 45666554432334689999993 3 344 35555553
No 451
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=20.47 E-value=7.8e+02 Score=24.79 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCeEEEeCC------HHHHHHHHCCCCe-EEEEecCCCCCCHHHHHHHHHHhhccCCCCceEEEEecCC
Q 004636 625 RSVTKGLLLHLGCDVMTVSS------VEECFRVVSHEHQ-VVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVALTGST 697 (740)
Q Consensus 625 ~~~l~~~L~~~g~~v~~a~~------g~eal~~~~~~~d-lvl~D~~mp~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~ 697 (740)
...+...|++.|+++...+- ..++.+.+...+| +||+.- ||.+.+.......+ .....+++++.
T Consensus 12 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~-----naV~~~~~~~~~~~-~~~~~~~~aVG--- 82 (240)
T PRK09189 12 AERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSA-----EAVRHLAALGERLL-PHLALPLFAVG--- 82 (240)
T ss_pred hHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECH-----HHHHHHHhcchhhH-HhcCCeEEEEc---
Confidence 34556778888998886532 1222233334455 456653 57766533211111 11234566554
Q ss_pred CHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Q 004636 698 DNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 698 ~~~~~~~~l~~Ga~~~i~KP~~~~~L~~~l~~~ 730 (740)
+.....+.+.|..+++.++.+.+.|.+.+...
T Consensus 83 -~~Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~ 114 (240)
T PRK09189 83 -EATAEAARELGFRHVIEGGGDGVRLAETVAAA 114 (240)
T ss_pred -HHHHHHHHHcCCCCCcCCCCCHHHHHHHHHHh
Confidence 34455556789988888889999998887654
No 452
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.44 E-value=1.8e+02 Score=30.85 Aligned_cols=60 Identities=10% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCceEEeecCchHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHCCCCeEEEEecCCCCCC
Q 004636 610 FPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGID 669 (740)
Q Consensus 610 ~~~~~ILIvdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlvl~D~~mp~~d 669 (740)
+.|.+++|+-.....-+-+..+|.+.|+.|+.+.+-..-+.....+.|+|+.-+.-|++=
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i 221 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLI 221 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCcccc
Confidence 467799999999999999999999899999988764443444445789999999888753
No 453
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=20.39 E-value=1e+03 Score=25.07 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhccCCCCceEEEEecCCCHHHHHHHHHcCCCeE------EECCCCHHHHHHHHHHHHccc
Q 004636 670 GYEVAVHIHDKFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGV------ILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 670 G~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~~~~l~~Ga~~~------i~KP~~~~~L~~~l~~~l~~~ 734 (740)
.++.++++++.. ..|||+..+-.+.++..+++.+|||.+ +..|.-..++.+-+.++++.+
T Consensus 222 ~l~~v~~i~~~~-----~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 222 ALRMVYQVYQAV-----DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred cHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 367777776432 367998888899999999999998753 446777888888888877654
No 454
>PRK07668 hypothetical protein; Validated
Probab=20.32 E-value=2.4e+02 Score=29.34 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhcccchhHHHHHHHHHHH
Q 004636 53 WVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKV 92 (740)
Q Consensus 53 ~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~ 92 (740)
|-...|.++++-++..=++....-|+|. +.|-++...-.
T Consensus 141 ~~i~~~~~~~~p~~l~i~i~~l~k~yp~-~~~~ls~~qs~ 179 (254)
T PRK07668 141 WFLIIYLVILIPMLLIVAIMFLNKWYGT-PMLQFTQMQSY 179 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCc-eEEEecchHHH
Confidence 3445556666666766677777777774 55444444333
No 455
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=20.22 E-value=1.8e+02 Score=29.58 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=59.2
Q ss_pred HHHHHHhcCCeEEEe----CCHHHHHHHHC-CCCeE-EEEecCCCCCCHHHH----HHHHHHhhccCCCCceEEEEecCC
Q 004636 628 TKGLLLHLGCDVMTV----SSVEECFRVVS-HEHQV-VFMDVCVPGIDGYEV----AVHIHDKFTRRHERPLIVALTGST 697 (740)
Q Consensus 628 l~~~L~~~g~~v~~a----~~g~eal~~~~-~~~dl-vl~D~~mp~~dG~e~----~~~Ir~~~~~~~~~~~II~lt~~~ 697 (740)
....+++.|..+-.+ .+.++....++ ...|. ++|+.+ |+.+|..+ +.+|++.. ...+. .-|.+++.-
T Consensus 106 ~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~-pG~~gq~~~~~~~~ki~~~~-~~~~~-~~I~VdGGI 182 (228)
T PTZ00170 106 VARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE-PGFGGQSFMHDMMPKVRELR-KRYPH-LNIQVDGGI 182 (228)
T ss_pred HHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc-cCCCCcEecHHHHHHHHHHH-Hhccc-CeEEECCCC
Confidence 334455667665543 34444444443 23465 456665 77777533 34443321 11122 346789999
Q ss_pred CHHHHHHHHHcCCCeE-----EECCCCHHHHHHHHHHHHc
Q 004636 698 DNLTKDNCMRVGMDGV-----ILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 698 ~~~~~~~~l~~Ga~~~-----i~KP~~~~~L~~~l~~~l~ 732 (740)
..+....+.++|+|-+ |.|.-++++-.+.+++.++
T Consensus 183 ~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 183 NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999954 4454466666666665543
No 456
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.19 E-value=5.7e+02 Score=25.72 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCeEE-EeCCHHHHHHHHCCCCeEEEEecCCC-CCCHHHHHHHHHHhhccCCCCceEEEEecCCCHHHH
Q 004636 625 RSVTKGLLLHLGCDVM-TVSSVEECFRVVSHEHQVVFMDVCVP-GIDGYEVAVHIHDKFTRRHERPLIVALTGSTDNLTK 702 (740)
Q Consensus 625 ~~~l~~~L~~~g~~v~-~a~~g~eal~~~~~~~dlvl~D~~mp-~~dG~e~~~~Ir~~~~~~~~~~~II~lt~~~~~~~~ 702 (740)
.+++. ...+.|.-+. -+.+..|+.+..+...|+|=+ .| +.-|.+.++.++.. .+..|++ -|+.-+.+..
T Consensus 99 ~~v~~-~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vkl---FPa~~~G~~~ik~l~~~----~p~ip~~-atGGI~~~N~ 169 (213)
T PRK06552 99 RETAK-ICNLYQIPYLPGCMTVTEIVTALEAGSEIVKL---FPGSTLGPSFIKAIKGP----LPQVNVM-VTGGVNLDNV 169 (213)
T ss_pred HHHHH-HHHHcCCCEECCcCCHHHHHHHHHcCCCEEEE---CCcccCCHHHHHHHhhh----CCCCEEE-EECCCCHHHH
Confidence 34443 3445676666 577889999988878888776 33 34578888877542 3446777 4777778889
Q ss_pred HHHHHcCCCeEE-----ECCC---CHHHHHHHHHHHH
Q 004636 703 DNCMRVGMDGVI-----LKPV---SLEKMRSVLSDLL 731 (740)
Q Consensus 703 ~~~l~~Ga~~~i-----~KP~---~~~~L~~~l~~~l 731 (740)
.+.+++|++.+- .+.. +.+++.+..+++.
T Consensus 170 ~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~ 206 (213)
T PRK06552 170 KDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYM 206 (213)
T ss_pred HHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHH
Confidence 999999987743 3332 3356666555543
No 457
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=20.12 E-value=67 Score=32.16 Aligned_cols=23 Identities=43% Similarity=0.803 Sum_probs=17.7
Q ss_pred CCCcchhHHHHHHHHHHcCCEEEE
Q 004636 545 SSGSGLGLAICKRFVNLMEGHIWI 568 (740)
Q Consensus 545 ~~GtGLGLaI~k~iv~~~gG~I~v 568 (740)
++++|+||+++|++.++ |-++-+
T Consensus 12 GG~sGIGl~lak~f~el-gN~VIi 34 (245)
T COG3967 12 GGASGIGLALAKRFLEL-GNTVII 34 (245)
T ss_pred CCcchhhHHHHHHHHHh-CCEEEE
Confidence 57899999999999986 334433
No 458
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=20.07 E-value=7.6e+02 Score=29.27 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=30.0
Q ss_pred hHHhhhhhHHHHHHHhhHhHHHHhHhhhcCCCchHHHHHHHHHHHHHhhHHHHHHH
Q 004636 18 MKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINL 73 (740)
Q Consensus 18 ~~~~~~sd~~i~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~ 73 (740)
..++.=+++.=++|+.-+|+.+++..+.++.=..+++.. .+...-+-+.||++..
T Consensus 69 ~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~-lAl~~all~lsHll~~ 123 (616)
T PF10131_consen 69 RNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWIL-LALSMALLALSHLLST 123 (616)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHhHHHH
Confidence 344455788888999999998765443221112343322 2223333456675544
Done!