Query 004636
Match_columns 740
No_of_seqs 481 out of 4099
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 18:37:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004636.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1933-1937//hhsearch_pdb/004636hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 1.0 1 1 304.3 29.6 232 335-587 11-249 (258)
2 2btz_A Pyruvate dehydrogenase 1.0 1 1 279.3 22.5 219 346-587 97-351 (394)
3 1gkz_A [3-methyl-2-oxobutanoat 1.0 1 1 278.8 26.1 227 339-588 116-375 (388)
4 2e0a_A Pyruvate dehydrogenase 1.0 1 1 273.9 28.5 219 345-587 96-351 (394)
5 2q8g_A [pyruvate dehydrogenase 1.0 1 1 273.0 24.3 219 345-587 107-364 (407)
6 4ew8_A Sensor protein DIVL; si 1.0 1 1 272.2 29.6 232 330-589 26-259 (268)
7 1y8o_A [pyruvate dehydrogenase 1.0 1 1 268.1 22.4 219 345-587 119-375 (419)
8 3jz3_A Sensor protein QSEC; he 1.0 1 1 266.8 12.3 216 344-588 2-219 (222)
9 3a0r_A Sensor protein; four he 1.0 1 1 264.2 21.8 214 342-587 130-346 (349)
10 3d36_A Sporulation kinase B; G 1.0 1 1 251.0 22.3 216 341-589 11-228 (244)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=1.00 E-value=1 Score=304.35 Aligned_cols=232 Identities=31% Similarity=0.457 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999999999999994765356899999999998149--9-99999999999999999999999999999763089810
Q 004636 335 REAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET--E-LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQ 411 (740)
Q Consensus 335 ~~~e~~~~~k~~fla~isHELRtPL~~I~g~~~lL~~~--~-~~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g~~~ 411 (740)
+++++..+.+.+|++++||||||||++|.++++++... . ..++.+++++.|.+++.++..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999870034158789999999999842247899999999999999999999999999999885278866
Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCC----EEEEEEEEE
Q ss_conf 1621005899999999997535440590899982999995226269899999999999884058999----099999983
Q 004636 412 LQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG----NISITGFVA 487 (740)
Q Consensus 412 l~~~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g----~i~i~~~~~ 487 (740)
+..+++++.+++.+++..+...+..+++.+.+......+..+.+|+.++.|++.||++||+||++.+ .|.+.....
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CCCCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
T ss_conf 76613559999999999999999976967985048898825874999999999999998985274789863699999547
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 25433368999876778789249899998519889948844551003346655678888734058999999998199999
Q 004636 488 KSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW 567 (740)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~ 567 (740)
. ..+.|.|+|+|+||+++.++++|+||++.+.....+.+|+||||+|||++++.|||+|+
T Consensus 171 ~--------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~ 230 (258)
T 2c2a_A 171 D--------------------GGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIW 230 (258)
T ss_dssp T--------------------TEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEE
T ss_pred C--------------------CEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9--------------------86999999658988978988662665157888777999761579999999998699899
Q ss_pred EEEECCCCEEEEEEEEEECC
Q ss_conf 99604994189999997078
Q 004636 568 IESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 568 v~S~~~g~G~~f~~~l~~~~ 587 (740)
++|. .|+|++|++.+|...
T Consensus 231 v~s~-~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 231 VESE-VGKGSRFFVWIPKDR 249 (258)
T ss_dssp EEEE-TTTEEEEEEEEECCC
T ss_pred EEEC-CCCCCEEEEEEECCC
T ss_conf 9863-899828999960787
No 2
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=1.00 E-value=1 Score=279.27 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC-CCCEEE
Q ss_conf 999994765356-----89999999999814999999----999999--999999999999999999976308-981016
Q 004636 346 DFLAVMNHEMRT-----PMHAIIALSSLLQETELTPE----QRLMVE--TILKSSNLLATLINDVLDLSRLED-GSLQLQ 413 (740)
Q Consensus 346 ~fla~isHELRt-----PL~~I~g~~~lL~~~~~~~~----~~~~l~--~i~~~~~~l~~lI~~lLd~sr~~~-g~~~l~ 413 (740)
+|+++++||||| ||+.|.|+++++.....++. ...+++ .+.+.+.++ +|++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999999850220179999999999876057866689999999999985327999--99999998522246788764
Q ss_pred E----EEECHHHHHHHHHHHHHHHHHH-----CCEEEEEEE--CCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCE---
Q ss_conf 2----1005899999999997535440-----590899982--9999952262698999999999998840589990---
Q 004636 414 I----GTFNLHAVFREVLNLIKPIASV-----KKLLVALNL--APDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN--- 479 (740)
Q Consensus 414 ~----~~~~L~~li~~~~~~~~~~~~~-----k~i~l~~~~--~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~--- 479 (740)
. +++++.+++++++..++..+.. +++.+.+.. .+..+..+.+|+.+|.||+.||++||+||+++|.
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 02026887899999999999999999961789976999722678887738995589999999999999999765025667
Q ss_pred -----EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCC-----CCCCCCCCC
Q ss_conf -----9999998325433368999876778789249899998519889948844551003346655-----678888734
Q 004636 480 -----ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI-----ALRNSSGSG 549 (740)
Q Consensus 480 -----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~-----~~~~~~GtG 549 (740)
|.|.+.... ..+.|.|+|+|+||+++.+++||++||+++.. ..+..+|+|
T Consensus 255 ~~~~~I~I~~~~~~--------------------~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGE--------------------EDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECS--------------------SEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEECC--------------------CEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88998799998079--------------------8799999967999797999898563566789877666779878744
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECC
Q ss_conf 05899999999819999999604994189999997078
Q 004636 550 LGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 550 LGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~~~ 587 (740)
|||+|||.+++.|||+|+++|. .|+|++|++.+|...
T Consensus 315 LGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 315 YGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALS 351 (394)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESST
T ss_pred CCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCC
T ss_conf 7899999999995997899962-798569999963898
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=1.00 E-value=1 Score=278.83 Aligned_cols=227 Identities=15% Similarity=0.149 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9999999999994765356899999-999998149999999999999999999999999999999763089810162100
Q 004636 339 TAIRARNDFLAVMNHEMRTPMHAII-ALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTF 417 (740)
Q Consensus 339 ~~~~~k~~fla~isHELRtPL~~I~-g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g~~~l~~~~~ 417 (740)
+.++.+.+|+++++||+||||+.|. |+.+++.....+++.+++++.+.++..++..++++++++++.+.+...+..+++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 89999999999999874328999999999998622682889999999999899999999999987245898201023788
Q ss_pred CHHHHHHHHHHHHHHHHHHC---CEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCC---------EEEEEEE
Q ss_conf 58999999999975354405---90899982999995226269899999999999884058999---------0999999
Q 004636 418 NLHAVFREVLNLIKPIASVK---KLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG---------NISITGF 485 (740)
Q Consensus 418 ~L~~li~~~~~~~~~~~~~k---~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g---------~i~i~~~ 485 (740)
++.+++++++..++..+..+ ...+.+..+.+ ..+.+|+.+|.||+.||+.||+||+++| .|.|.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 8999999999999999998518997079970478--71565489999999999999999855015677888998899999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCC--------------------CCCC
Q ss_conf 83254333689998767787892498999985198899488445510033466556--------------------7888
Q 004636 486 VAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIA--------------------LRNS 545 (740)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~--------------------~~~~ 545 (740)
... ..+.|.|+|+|+||+++.+++||++||+++... .+..
T Consensus 274 ~~~--------------------~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (388)
T 1gkz_A 274 NND--------------------VDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPM 333 (388)
T ss_dssp ECS--------------------SEEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CC
T ss_pred ECC--------------------CEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 479--------------------879999998078869789887638445057886554432210000012455678986
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 8734058999999998199999996049941899999970789
Q 004636 546 SGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP 588 (740)
Q Consensus 546 ~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~~~~ 588 (740)
+|+||||+|||.+++.|||+|+++|. .|.|++|++.+|..-.
T Consensus 334 ~G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 334 HGFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDG 375 (388)
T ss_dssp SCSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCC
T ss_conf 87267899999999996997899963-8984799999538998
No 4
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=1.00 E-value=1 Score=273.94 Aligned_cols=219 Identities=18% Similarity=0.202 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHCCCCEE
Q ss_conf 9999994765356-----8999999999981499----9999999999--999999999999999999-97630898101
Q 004636 345 NDFLAVMNHEMRT-----PMHAIIALSSLLQETE----LTPEQRLMVE--TILKSSNLLATLINDVLD-LSRLEDGSLQL 412 (740)
Q Consensus 345 ~~fla~isHELRt-----PL~~I~g~~~lL~~~~----~~~~~~~~l~--~i~~~~~~l~~lI~~lLd-~sr~~~g~~~l 412 (740)
.+++++++||||| ||+.|.|+++++.... ..++.+++++ .+.+.+.+| +|+++++ +++. .+....
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCC-CCCCCC
T ss_conf 99999999999863100078999999999866435755689999999999999899999--999999986144-678887
Q ss_pred EE----EEECHHHHHHHHHHHHHHHHHHC-----CEEEEEEE--CCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCE--
Q ss_conf 62----10058999999999975354405-----90899982--9999952262698999999999998840589990--
Q 004636 413 QI----GTFNLHAVFREVLNLIKPIASVK-----KLLVALNL--APDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN-- 479 (740)
Q Consensus 413 ~~----~~~~L~~li~~~~~~~~~~~~~k-----~i~l~~~~--~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~-- 479 (740)
.. +++++.+++++++..++..+..+ ++.+.++. .+..+..+.+|+.+|.||+.||++||+||+++|.
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~ 252 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQEN 252 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 30301577779999999999999999985189996699972257789872799748999999999999999998731566
Q ss_pred ------EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCC------CCCCCCC
Q ss_conf ------9999998325433368999876778789249899998519889948844551003346655------6788887
Q 004636 480 ------ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI------ALRNSSG 547 (740)
Q Consensus 480 ------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~------~~~~~~G 547 (740)
|.|.+.... ..+.|.|+|+|+||+++.+++||++||+++.. ..+..+|
T Consensus 253 ~~~~~~I~I~~~~~~--------------------~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G 312 (394)
T 2e0a_A 253 QPSLTPIEVIVVLGK--------------------EDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAG 312 (394)
T ss_dssp SSSCCCEEEEEEECS--------------------SEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSC
T ss_pred CCCCCCEEEEEEECC--------------------CEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 688998799999579--------------------879999996799959789878757676278987767677789787
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECC
Q ss_conf 3405899999999819999999604994189999997078
Q 004636 548 SGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 548 tGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~~~ 587 (740)
+||||+|||++++.|||+|+++|. .|+|++|++.+|...
T Consensus 313 ~GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 313 FGYGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALS 351 (394)
T ss_dssp SSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSG
T ss_pred CCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCC
T ss_conf 226899999999994997999954-896379999967999
No 5
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=1.00 E-value=1 Score=272.99 Aligned_cols=219 Identities=17% Similarity=0.197 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC----C-
Q ss_conf 9999994765356-----899999999998149999----999999999--99999999999999999976308----9-
Q 004636 345 NDFLAVMNHEMRT-----PMHAIIALSSLLQETELT----PEQRLMVET--ILKSSNLLATLINDVLDLSRLED----G- 408 (740)
Q Consensus 345 ~~fla~isHELRt-----PL~~I~g~~~lL~~~~~~----~~~~~~l~~--i~~~~~~l~~lI~~lLd~sr~~~----g- 408 (740)
+.|.+ ++||||| ||+.|.|+++++.....+ ++.+.+++. +.+.+.++ +|++++++++.+. +
T Consensus 107 ~~f~~-~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~ 183 (407)
T 2q8g_A 107 YDFTD-TVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSH 183 (407)
T ss_dssp HHHHH-HHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---------
T ss_pred HHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCC
T ss_conf 99999-99999864110259999999999876356866789999999999999999999--9999999845433567888
Q ss_pred --CCEEEEEEECHHHHHHHHHHHHHHHHHHC-----CEEEEEEE--CCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf --81016210058999999999975354405-----90899982--999995226269899999999999884058999-
Q 004636 409 --SLQLQIGTFNLHAVFREVLNLIKPIASVK-----KLLVALNL--APDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG- 478 (740)
Q Consensus 409 --~~~l~~~~~~L~~li~~~~~~~~~~~~~k-----~i~l~~~~--~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g- 478 (740)
......+++++.+++++++..++..+..+ ++.+.++. .+..+..+.+|+.+|.||+.||++||+||+++|
T Consensus 184 ~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 263 (407)
T 2q8g_A 184 RKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHH 263 (407)
T ss_dssp -CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 46225445778899999999999999999851789956999963478898727997599999999999999999876115
Q ss_pred -------EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCC------CCCCC
Q ss_conf -------09999998325433368999876778789249899998519889948844551003346655------67888
Q 004636 479 -------NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI------ALRNS 545 (740)
Q Consensus 479 -------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~------~~~~~ 545 (740)
.|.|.+.... ..+.|.|+|+|+||+++.+++||++||+++.. ..+..
T Consensus 264 ~~~~~~~~I~I~~~~~~--------------------~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~ 323 (407)
T 2q8g_A 264 ANRGVYPPIQVHVTLGN--------------------EDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPL 323 (407)
T ss_dssp TTTCCCCCEEEEEEECS--------------------SEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCS
T ss_pred CCCCCCCCEEEEEEECC--------------------CEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 66788997799999689--------------------8799999966898897999988475550788877666677987
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECC
Q ss_conf 873405899999999819999999604994189999997078
Q 004636 546 SGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 546 ~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~~~ 587 (740)
+|+||||+|||.+++.|||+|+++|. .|+|++|++.+|...
T Consensus 324 ~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 324 AGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALS 364 (407)
T ss_dssp SCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSG
T ss_pred CCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCC
T ss_conf 87077889999999982997999974-898569999977899
No 6
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=1.00 E-value=1 Score=272.22 Aligned_cols=232 Identities=28% Similarity=0.425 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999947653568999999999981499-99999999999999999999999999999763089
Q 004636 330 LDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETE-LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDG 408 (740)
Q Consensus 330 l~~a~~~~e~~~~~k~~fla~isHELRtPL~~I~g~~~lL~~~~-~~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g 408 (740)
+++..+++++..+.+.+|++.++|||||||++|.++++++.+.. .+++.+++++.+.+++.++..++++++++++.+.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999988987528999999999986266898899999999999999999999999999986447
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEEE
Q ss_conf 810162100589999999999753544059089998299999522626989999999999988405899-9099999983
Q 004636 409 SLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-GNISITGFVA 487 (740)
Q Consensus 409 ~~~l~~~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~-g~i~i~~~~~ 487 (740)
...+..+++++.+++.+++..+...+..+++.+.++.+++.+. +.+|+..+.+|+.||+.||+||++. |.|.+.+...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~-v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSCE-EEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCE-EECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 7612666336999999999998765420382499981887826-856999999999999999997189997799999966
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 25433368999876778789249899998519889948844551003346655678888734058999999998199999
Q 004636 488 KSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW 567 (740)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~ 567 (740)
. ..+.|.|+|+|+||+++.++++|+||++.+ .+|+||||++|+++++.|||+|+
T Consensus 185 ~--------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~------~~g~GlGL~i~~~~~~~~gG~i~ 238 (268)
T 4ew8_A 185 L--------------------GEVRLDVSDTGRGVPFHVQAHIFDRFVGRD------RGGPGLGLALVKALVELHGGWVA 238 (268)
T ss_dssp S--------------------SEEEEEEEESSCCCCHHHHTTTTSTTCCCS------SCCCTTHHHHHHHHHHHTTCEEE
T ss_pred C--------------------CEEEEEEECCCCCCCHHHHHHHHHHHHCCC------CCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 9--------------------879999973899989899998888986689------99984339999999998399899
Q ss_pred EEEECCCCEEEEEEEEEECCCC
Q ss_conf 9960499418999999707898
Q 004636 568 IESEGLGKGCTAIFIVKLGIPE 589 (740)
Q Consensus 568 v~S~~~g~G~~f~~~l~~~~~~ 589 (740)
++|. .|+|++|++.+|...++
T Consensus 239 i~s~-~~~Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 239 LESE-PGNGSTFTCHLPETQQP 259 (268)
T ss_dssp EEEC-TTSCEEEEEEEECCC--
T ss_pred EEEC-CCCCEEEEEEECCCCCC
T ss_conf 9966-99977999993688898
No 7
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=1.00 E-value=1 Score=268.13 Aligned_cols=219 Identities=20% Similarity=0.226 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHCCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-CCCCEE
Q ss_conf 9999994765356899-----99999999814999----99999999999999--999999999999997630-898101
Q 004636 345 NDFLAVMNHEMRTPMH-----AIIALSSLLQETEL----TPEQRLMVETILKS--SNLLATLINDVLDLSRLE-DGSLQL 412 (740)
Q Consensus 345 ~~fla~isHELRtPL~-----~I~g~~~lL~~~~~----~~~~~~~l~~i~~~--~~~l~~lI~~lLd~sr~~-~g~~~l 412 (740)
++|. +++|||||||+ .|.|+++++..... .++..++++.+..+ +.++ +|++++.+.+.. .+....
T Consensus 119 ~~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~ 195 (419)
T 1y8o_A 119 DNFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPK 195 (419)
T ss_dssp HHHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTT
T ss_pred HHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCC
T ss_conf 9999-999998541166699999999999987466866689999999999998888999--9999999860224677877
Q ss_pred ----EEEEECHHHHHHHHHHHHHHHHHH-----CCEEEEEEEC--CCCCCCEECCHHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf ----621005899999999997535440-----5908999829--99995226269899999999999884058999---
Q 004636 413 ----QIGTFNLHAVFREVLNLIKPIASV-----KKLLVALNLA--PDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG--- 478 (740)
Q Consensus 413 ----~~~~~~L~~li~~~~~~~~~~~~~-----k~i~l~~~~~--~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g--- 478 (740)
..+++++.+++++++..++..+.. +++.+.+... +..+..+.+|+.+|.||+.||++||+||+++|
T Consensus 196 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~ 275 (419)
T 1y8o_A 196 HIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYED 275 (419)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54522676889999999999999999985088996799963047789984899739999999999999999998751356
Q ss_pred ------EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCC------CCCCCC
Q ss_conf ------09999998325433368999876778789249899998519889948844551003346655------678888
Q 004636 479 ------NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI------ALRNSS 546 (740)
Q Consensus 479 ------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~------~~~~~~ 546 (740)
.|.|.+.... ..+.|.|+|+|+||+++.+++||+|||+++.. ..+..+
T Consensus 276 ~~~~~~~I~I~~~~~~--------------------~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~ 335 (419)
T 1y8o_A 276 RKEGYPAVKTLVTLGK--------------------EDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLA 335 (419)
T ss_dssp CSSCCCCEEEEEEECS--------------------SEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC-
T ss_pred CCCCCCCEEEEEEECC--------------------CEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6778997899999579--------------------87999999799997989999883733416888776666778868
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECC
Q ss_conf 73405899999999819999999604994189999997078
Q 004636 547 GSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGI 587 (740)
Q Consensus 547 GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~~~ 587 (740)
|+||||+|||++++.|||+|+++|. .|+|++|++.+|...
T Consensus 336 G~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 336 GFGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALS 375 (419)
T ss_dssp -CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCG
T ss_pred CEECCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCC
T ss_conf 7405899999999996997999964-899779999965888
No 8
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=1.00 E-value=1 Score=266.81 Aligned_cols=216 Identities=21% Similarity=0.291 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHH
Q ss_conf 99999994765356899999999998149999-99999999999999999999999999976308981016210058999
Q 004636 344 RNDFLAVMNHEMRTPMHAIIALSSLLQETELT-PEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAV 422 (740)
Q Consensus 344 k~~fla~isHELRtPL~~I~g~~~lL~~~~~~-~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g~~~l~~~~~~L~~l 422 (740)
+.+|++.++|||||||++|.++++++.....+ ++..++++.+.++++++..++++++++++.+.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 77899997687447599999999998643588478999999999999999999999998997413587667355779999
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99999997535440590899982999995226269899999999999884058999-09999998325433368999876
Q 004636 423 FREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG-NISITGFVAKSESLRDSRAPEFF 501 (740)
Q Consensus 423 i~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g-~i~i~~~~~~~~~~~~~~~~~~~ 501 (740)
+.+++..+...+..+++.+.++.+++.+ .+.+|+..+.+|+.||+.||+||++.| .|.+... .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--A------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--S-------------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--C-------------
T ss_conf 9999998777899708758986088650-77368999999999999999873989986999972--6-------------
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 77878924989999851988994884455100334665567888873405899999999819999999604994189999
Q 004636 502 PVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 581 (740)
Q Consensus 502 ~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~ 581 (740)
-.|.|+|+|+||+++.++++|+||++.+. .+.+|+||||++|+++++.|||+|+++|. .|+|++|+|
T Consensus 146 ---------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~ 212 (222)
T 3jz3_A 146 ---------DNFIVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKV 212 (222)
T ss_dssp ---------SEEEEECSCC-----------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEE
T ss_pred ---------CEEEEEECCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHHHHCCCEEEEECC-CCCCEEEEE
T ss_conf ---------73899878999799999999863250899---99995463599999999984998999728-999579999
Q ss_pred EEEECCC
Q ss_conf 9970789
Q 004636 582 IVKLGIP 588 (740)
Q Consensus 582 ~l~~~~~ 588 (740)
.+|...+
T Consensus 213 ~~P~~~~ 219 (222)
T 3jz3_A 213 SWLEHHH 219 (222)
T ss_dssp ECCCC--
T ss_pred EECCCCC
T ss_conf 6367799
No 9
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=264.15 Aligned_cols=214 Identities=25% Similarity=0.393 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHH
Q ss_conf 999999999476535689999999999814999-9999999999999999999999999999763089810162100589
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETEL-TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420 (740)
Q Consensus 342 ~~k~~fla~isHELRtPL~~I~g~~~lL~~~~~-~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g~~~l~~~~~~L~ 420 (740)
+.+++|++.++||+||||++|.++++++.+... +++..++++.+..++.++..++++++++++.. ..+..+++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCHH
T ss_conf 999999988788764649999999999986306918999999999999999999999999983775---55677425799
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEECCCCCCCCCCCC
Q ss_conf 99999999975354405908999829999952262698999999999998840589-99099999983254333689998
Q 004636 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAPE 499 (740)
Q Consensus 421 ~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~-~g~i~i~~~~~~~~~~~~~~~~~ 499 (740)
+++.+++..+...+..+++.+.++.+++.+ .+.+|+.++.||+.||+.||+||++ .|.|.+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC----------
T ss_conf 999999999999999769689995488884-598689999999999999999865579779999995598----------
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEEECCCCEEE
Q ss_conf 7677878924989999851988994884455100334665567888873405899999999-819999999604994189
Q 004636 500 FFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVN-LMEGHIWIESEGLGKGCT 578 (740)
Q Consensus 500 ~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~-~~gG~I~v~S~~~g~G~~ 578 (740)
.+.|+|+|+|+||+++.++++|+||++++ .+|+||||+||+++++ .|||.++++|. .+ |++
T Consensus 276 ----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~g~GlGL~i~~~~v~~~~gg~i~~~~~-~~-Gt~ 337 (349)
T 3a0r_A 276 ----------KVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTENR-EN-GVV 337 (349)
T ss_dssp ----------EEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCTHHHHHHHHTTCSBCCEEEC-SS-EEE
T ss_pred ----------EEEEEEEECCCCCCHHHHHHCCCCCCCCC------CCCCCCHHHHHHHHHHHHCCCEEEEEEC-CC-CEE
T ss_conf ----------89999998999979679955388873079------9983110999999999718977999807-99-479
Q ss_pred EEEEEEECC
Q ss_conf 999997078
Q 004636 579 AIFIVKLGI 587 (740)
Q Consensus 579 f~~~l~~~~ 587 (740)
|++.+|...
T Consensus 338 f~i~lP~~~ 346 (349)
T 3a0r_A 338 FIFEIPKTP 346 (349)
T ss_dssp EEEEEESCT
T ss_pred EEEEECCCC
T ss_conf 999932897
No 10
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=250.99 Aligned_cols=216 Identities=23% Similarity=0.435 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECH
Q ss_conf 99999999994765356899999999998149999-99999999999999999999999999976308981016210058
Q 004636 341 IRARNDFLAVMNHEMRTPMHAIIALSSLLQETELT-PEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419 (740)
Q Consensus 341 ~~~k~~fla~isHELRtPL~~I~g~~~lL~~~~~~-~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g~~~l~~~~~~L 419 (740)
.+.+++|++.++|||||||++|.++++++.+...+ ++.+++++.+.+++.++..++++++++++.+.+ ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHH
T ss_conf 999999999866975467999999999987063580679999999999999999999999998731568----8631257
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEECCCCCCCCCCC
Q ss_conf 999999999975354405908999829999952262698999999999998840589-9909999998325433368999
Q 004636 420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTK-EGNISITGFVAKSESLRDSRAP 498 (740)
Q Consensus 420 ~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~-~g~i~i~~~~~~~~~~~~~~~~ 498 (740)
..++.+++..+...+..+++.+.+..++ ..+.+|+..+.+++.||+.||+||++ .+.|.+.+.....
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCC---CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC---------
T ss_conf 9999999999999987427287236887---3689679999999999999999964679818999998599---------
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEE
Q ss_conf 87677878924989999851988994884455100334665567888873405899999999819999999604994189
Q 004636 499 EFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 578 (740)
Q Consensus 499 ~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~ 578 (740)
.+.|.|+|+|+||+++.++++|+||++.+. .+|+|+||++|+++++.|||+|+++|. .++|++
T Consensus 155 -----------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----~~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~ 217 (244)
T 3d36_A 155 -----------RVLIRIADTGVGMTKEQLERLGEPYFTTKG-----VKGTGLGMMVVYRIIESMNGTIRIESE-IHKGTT 217 (244)
T ss_dssp -----------EEEEEEEECSSCCCHHHHHHTTSTTCCSSG-----GGCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEE
T ss_pred -----------EEEEEEEECCCCCCHHHHHHHHCCCCCCCC-----CCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCCEE
T ss_conf -----------899999725899798999988563302789-----887652599999999985998999966-999179
Q ss_pred EEEEEEECCCC
Q ss_conf 99999707898
Q 004636 579 AIFIVKLGIPE 589 (740)
Q Consensus 579 f~~~l~~~~~~ 589 (740)
|++.+|+...+
T Consensus 218 ~~i~lP~~~~~ 228 (244)
T 3d36_A 218 VSIYLPLASSP 228 (244)
T ss_dssp EEEEEECCC--
T ss_pred EEEEECCCCCC
T ss_conf 99995189998
Done!