Query 004636
Match_columns 740
No_of_seqs 481 out of 4099
Neff 8.1
Searched_HMMs 13730
Date Tue Mar 26 18:41:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004636.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1933-1937//hhsearch_scop/004636hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c2aa2 d.122.1.3 (A:321-481) 100.0 1.7E-31 1.3E-35 237.1 20.2 155 411-586 1-159 (161)
2 d1ysra1 d.122.1.3 (A:299-446) 100.0 1.3E-28 9.4E-33 216.8 17.4 146 413-586 2-147 (148)
3 d1bxda_ d.122.1.3 (A:) Histidi 100.0 8.2E-28 6E-32 211.1 17.5 151 411-590 4-154 (161)
4 d1id0a_ d.122.1.3 (A:) Histidi 100.0 1.6E-27 1.2E-31 209.0 18.4 144 415-586 2-145 (146)
5 d1gkza2 d.122.1.4 (A:186-378) 99.9 9.9E-27 7.2E-31 203.4 14.1 148 415-585 8-187 (193)
6 d1jm6a2 d.122.1.4 (A:1177-1366 99.9 4.1E-26 3E-30 199.0 16.6 150 416-586 10-179 (190)
7 d1r62a_ d.122.1.3 (A:) Nitroge 99.9 5.2E-26 3.8E-30 198.3 15.8 154 415-586 2-155 (156)
8 d1dcfa_ c.23.1.2 (A:) Receiver 99.9 7.1E-23 5.1E-27 176.1 17.9 131 608-738 3-134 (134)
9 d2pl1a1 c.23.1.1 (A:1-119) Pho 99.9 1.2E-20 9E-25 160.2 16.8 117 613-733 1-118 (119)
10 d1dbwa_ c.23.1.1 (A:) Transcri 99.9 3.1E-20 2.3E-24 157.3 18.0 118 612-733 3-121 (123)
11 d1zesa1 c.23.1.1 (A:3-123) Pho 99.9 2.3E-20 1.7E-24 158.3 17.0 118 614-733 2-120 (121)
12 d1s8na_ c.23.1.1 (A:) Probable 99.9 2.3E-21 1.7E-25 165.4 11.7 118 612-734 3-122 (190)
13 d1peya_ c.23.1.1 (A:) Sporulat 99.9 2.3E-20 1.7E-24 158.3 16.7 116 613-732 2-118 (119)
14 d1qkka_ c.23.1.1 (A:) Transcri 99.9 1.7E-20 1.3E-24 159.2 15.3 119 613-735 1-120 (140)
15 d2r25b1 c.23.1.1 (B:1087-1214) 99.9 4.8E-20 3.5E-24 156.0 17.3 118 613-733 2-126 (128)
16 d1ys7a2 c.23.1.1 (A:7-127) Tra 99.8 6.5E-21 4.7E-25 162.2 12.3 118 613-734 2-120 (121)
17 d1mb3a_ c.23.1.1 (A:) Cell div 99.8 1.8E-20 1.3E-24 159.1 14.4 120 613-734 2-122 (123)
18 d1kgsa2 c.23.1.1 (A:2-123) Pho 99.8 2.2E-20 1.6E-24 158.5 14.4 118 613-734 2-120 (122)
19 d1ny5a1 c.23.1.1 (A:1-137) Tra 99.8 3E-20 2.2E-24 157.4 15.0 119 613-735 1-120 (137)
20 d1mvoa_ c.23.1.1 (A:) PhoP rec 99.8 3.6E-20 2.6E-24 156.9 15.3 117 613-733 3-120 (121)
21 d2a9pa1 c.23.1.1 (A:2-118) DNA 99.8 6.3E-20 4.6E-24 155.2 16.0 115 614-733 2-117 (117)
22 d1zh2a1 c.23.1.1 (A:2-120) Tra 99.8 2.6E-20 1.9E-24 158.0 13.7 116 614-734 2-118 (119)
23 d1xhfa1 c.23.1.1 (A:2-122) Aer 99.8 9.4E-20 6.8E-24 154.0 16.5 116 613-733 3-119 (121)
24 d1w25a1 c.23.1.1 (A:2-140) Res 99.8 5.5E-20 4E-24 155.6 15.1 121 613-735 2-123 (139)
25 d2ayxa1 c.23.1.1 (A:817-949) S 99.8 3.4E-20 2.5E-24 157.1 13.9 119 611-733 7-126 (133)
26 d1jbea_ c.23.1.1 (A:) CheY pro 99.8 1.3E-19 9.8E-24 152.8 16.9 122 611-734 3-126 (128)
27 d1zgza1 c.23.1.1 (A:2-121) Tor 99.8 1.8E-19 1.3E-23 152.0 17.0 116 613-733 2-118 (120)
28 d1a04a2 c.23.1.1 (A:5-142) Nit 99.8 1.7E-19 1.2E-23 152.2 16.9 123 612-738 2-127 (138)
29 d1u0sy_ c.23.1.1 (Y:) CheY pro 99.8 1.1E-19 7.7E-24 153.6 15.7 115 612-730 1-117 (118)
30 d1i3ca_ c.23.1.1 (A:) Response 99.8 2.3E-19 1.7E-23 151.2 17.4 120 612-733 3-132 (144)
31 d1p6qa_ c.23.1.1 (A:) CheY pro 99.8 7.7E-20 5.6E-24 154.6 14.9 121 611-733 5-127 (129)
32 d1k66a_ c.23.1.1 (A:) Response 99.8 8.6E-20 6.3E-24 154.2 14.7 119 613-733 7-138 (149)
33 d1krwa_ c.23.1.1 (A:) NTRC rec 99.8 2.9E-20 2.1E-24 157.6 12.2 118 613-734 4-122 (123)
34 d1w25a2 c.23.1.1 (A:141-293) R 99.8 7.9E-20 5.7E-24 154.5 13.9 122 610-735 11-133 (153)
35 d1k68a_ c.23.1.1 (A:) Response 99.8 2.8E-19 2E-23 150.6 16.7 119 613-733 3-131 (140)
36 d1yioa2 c.23.1.1 (A:3-130) Res 99.8 2.1E-19 1.5E-23 151.5 14.4 118 613-734 3-121 (128)
37 d1dz3a_ c.23.1.1 (A:) Sporulat 99.8 2.3E-19 1.7E-23 151.2 14.3 118 613-733 2-122 (123)
38 d1p2fa2 c.23.1.1 (A:1-120) Res 99.8 4.5E-19 3.3E-23 149.1 15.2 117 613-735 3-119 (120)
39 d1qo0d_ c.23.1.3 (D:) Positive 99.8 5.2E-18 3.8E-22 141.6 11.6 117 609-733 8-124 (189)
40 d1a2oa1 c.23.1.1 (A:1-140) Met 99.7 5.4E-17 3.9E-21 134.4 14.7 117 612-732 3-132 (140)
41 d1ixma_ d.123.1.1 (A:) Sporula 99.7 3.4E-17 2.5E-21 135.8 13.6 166 342-552 7-179 (179)
42 d2b4aa1 c.23.1.1 (A:2-119) Hyp 99.7 3.2E-17 2.3E-21 136.0 11.1 112 612-730 2-115 (118)
43 d2hkja3 d.122.1.2 (A:10-228) T 99.7 6.3E-16 4.6E-20 126.8 15.1 158 455-633 18-183 (219)
44 d1i58a_ d.122.1.3 (A:) Histidi 99.5 2.5E-13 1.8E-17 108.4 13.0 70 514-585 119-188 (189)
45 d1th8a_ d.122.1.3 (A:) Anti-si 99.3 2.6E-11 1.9E-15 94.1 12.5 95 457-582 37-135 (139)
46 d2c2aa1 a.30.2.1 (A:232-320) S 99.3 1.3E-11 9.2E-16 96.4 9.5 75 336-410 12-89 (89)
47 d1y8oa2 d.122.1.4 (A:177-301) 99.2 9.4E-11 6.8E-15 90.2 10.0 97 415-531 13-125 (125)
48 d1mc0a1 d.110.2.1 (A:215-401) 98.9 1.1E-07 8.1E-12 68.4 15.5 164 143-320 5-169 (187)
49 d1joya_ a.30.2.1 (A:) EnvZ his 98.6 2E-08 1.5E-12 73.6 5.2 59 341-404 9-67 (67)
50 d1mc0a2 d.110.2.1 (A:402-555) 98.5 3.5E-06 2.6E-10 57.7 14.7 147 158-317 1-150 (154)
51 d2k2na1 d.110.2.1 (A:31-200) S 98.3 1E-05 7.5E-10 54.5 13.0 140 159-312 1-170 (170)
52 d2oola1 d.110.2.1 (A:140-333) 98.1 0.0003 2.2E-08 44.0 20.1 156 139-308 3-187 (194)
53 d1vhma_ d.110.2.1 (A:) Hypothe 98.1 0.0003 2.2E-08 44.0 16.6 141 149-311 13-154 (159)
54 d3c2wa1 d.110.2.1 (A:118-309) 98.1 0.00032 2.3E-08 43.8 15.9 83 146-228 10-96 (192)
55 d2o9ca1 d.110.2.1 (A:135-321) 98.1 0.00043 3.1E-08 43.0 18.5 153 144-310 4-185 (187)
56 d2veaa1 d.110.2.1 (A:131-326) 97.9 0.00055 4E-08 42.2 15.4 85 144-228 8-96 (196)
57 d1h7sa2 d.122.1.2 (A:29-231) D 97.2 0.0027 1.9E-07 37.3 10.4 90 459-575 6-101 (203)
58 d1b63a2 d.122.1.2 (A:-2-216) D 96.7 0.0029 2.1E-07 37.1 6.8 89 459-574 24-118 (218)
59 d1f5ma_ d.110.2.1 (A:) Hypothe 96.1 0.033 2.4E-06 29.6 16.7 133 156-307 36-174 (176)
60 d1pvga2 d.122.1.2 (A:7-245) DN 95.2 0.074 5.4E-06 27.1 8.5 83 458-562 52-150 (239)
61 d1ei1a2 d.122.1.2 (A:2-220) DN 94.1 0.099 7.2E-06 26.2 7.1 83 457-562 32-129 (219)
62 d1kija2 d.122.1.2 (A:9-220) DN 92.2 0.25 1.8E-05 23.3 8.8 84 456-562 23-121 (212)
63 d1s14a_ d.122.1.2 (A:) Topoiso 91.7 0.2 1.4E-05 24.1 5.7 78 456-571 2-82 (168)
64 d2iwxa1 d.122.1.1 (A:2-214) HS 85.3 0.53 3.9E-05 21.0 4.3 59 512-574 73-141 (213)
65 d2gqpa1 d.122.1.1 (A:74-337) H 84.9 0.53 3.8E-05 21.1 4.1 56 512-571 71-141 (227)
66 d1ccwa_ c.23.6.1 (A:) Glutamat 84.3 0.81 5.9E-05 19.7 12.6 117 614-733 5-136 (137)
67 d1uyla_ d.122.1.1 (A:) HSP90 { 84.3 0.52 3.8E-05 21.1 3.9 61 512-576 72-142 (208)
68 d7reqa2 c.23.6.1 (A:561-728) M 65.2 2.5 0.00018 16.2 12.1 107 613-722 38-153 (168)
69 d1kzyc2 c.15.1.4 (C:1867-1972) 55.5 2.2 0.00016 16.7 1.4 59 609-667 2-62 (106)
70 d1xm3a_ c.1.31.1 (A:) Thiazole 43.6 5.5 0.0004 13.9 7.1 105 620-731 110-226 (251)
71 d1xrsb1 c.23.6.1 (B:102-261) D 32.9 7.9 0.00058 12.7 9.4 113 619-734 30-158 (160)
72 d7reqb2 c.23.6.1 (B:476-638) M 29.2 9.1 0.00066 12.3 7.2 116 613-733 36-161 (163)
73 d1o4ua1 c.1.17.1 (A:104-273) Q 25.1 11 0.00078 11.8 5.7 93 614-712 50-149 (170)
No 1
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=1.7e-31 Score=237.14 Aligned_cols=155 Identities=30% Similarity=0.428 Sum_probs=135.4
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCE----EEEEEEE
Q ss_conf 016210058999999999975354405908999829999952262698999999999998840589990----9999998
Q 004636 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN----ISITGFV 486 (740)
Q Consensus 411 ~l~~~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~----i~i~~~~ 486 (740)
+++.+++++.+++++++..++..+..+++.+.++.+.+.|..+.+|+.+|+||+.||++||+|||+.|. |.+....
T Consensus 1 el~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~ 80 (161)
T d2c2aa2 1 QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE 80 (161)
T ss_dssp CCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE
T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 97047999999999999999999987797899983899987999889999999999999999963607975304677885
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 32543336899987677878924989999851988994884455100334665567888873405899999999819999
Q 004636 487 AKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHI 566 (740)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I 566 (740)
. . .++.|+|+|+|+|||+++++++|+||||.+...+++.+|+||||+|||++++.|||+|
T Consensus 81 ~--~------------------~~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i 140 (161)
T d2c2aa2 81 K--D------------------GGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRI 140 (161)
T ss_dssp E--T------------------TEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEE
T ss_pred C--C------------------CEEEEEEEECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 5--9------------------9999999982777798999886398487678887888934579999999999879989
Q ss_pred EEEEECCCCEEEEEEEEEEC
Q ss_conf 99960499418999999707
Q 004636 567 WIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 567 ~v~S~~~g~G~~f~~~l~~~ 586 (740)
+++|. .|+|++|++++|..
T Consensus 141 ~v~s~-~~~Gt~f~i~lP~~ 159 (161)
T d2c2aa2 141 WVESE-VGKGSRFFVWIPKD 159 (161)
T ss_dssp EEEEE-TTTEEEEEEEEECC
T ss_pred EEEEC-CCCEEEEEEEEECC
T ss_conf 99964-99906999999854
No 2
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.96 E-value=1.3e-28 Score=216.78 Aligned_cols=146 Identities=20% Similarity=0.254 Sum_probs=122.3
Q ss_pred EEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
Q ss_conf 62100589999999999753544059089998299999522626989999999999988405899909999998325433
Q 004636 413 QIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESL 492 (740)
Q Consensus 413 ~~~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~i~i~~~~~~~~~~ 492 (740)
+.+++|+.+++++++..++.....+ .+.+..+ .+..+.+|+.+|+|++.||++||+||++.+.|.+.+.....
T Consensus 2 d~~pvdl~~l~~~~~~~~~~~~~~~--~i~~~~~--~~~~v~~d~~~l~~vl~NLl~NAiky~~~~~I~i~~~~~~~--- 74 (148)
T d1ysra1 2 DHVPVDITDLLDRAAHDAARIYPDL--DVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA--- 74 (148)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHSTTC--EEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT---
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC--CEEEECC--CCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---
T ss_conf 9885569999999999999874798--6899569--99589988999999999999998886699489999970499---
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 36899987677878924989999851988994884455100334665567888873405899999999819999999604
Q 004636 493 RDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEG 572 (740)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~ 572 (740)
.+.|+|+|+|+|||+++++++|+||+|.+. .+.+|+||||+|||+|++.|||+|+++|.
T Consensus 75 -----------------~~~i~V~D~G~Gi~~~~~~~ife~f~r~~~---~~~~G~GLGL~i~~~iv~~hgG~i~~~s~- 133 (148)
T d1ysra1 75 -----------------GVEIAIDDNGSGVPEGERQVVFERFSRGST---ASHSGSGLGLALVAQQAQLHGGTASLENS- 133 (148)
T ss_dssp -----------------EEEEEEEESSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEEC-
T ss_pred -----------------EEEEEEEECCCCCCHHHHHHHCCCCCCCCC---CCCCCCCHHHHHHHHHHHHCCCEEEEEEC-
T ss_conf -----------------999999974879897999975576344799---99897157999999999984998999976-
Q ss_pred CCCEEEEEEEEEEC
Q ss_conf 99418999999707
Q 004636 573 LGKGCTAIFIVKLG 586 (740)
Q Consensus 573 ~g~G~~f~~~l~~~ 586 (740)
.++|++|++.+|++
T Consensus 134 ~~~Gt~f~i~lP~~ 147 (148)
T d1ysra1 134 PLGGARLVLRLPGP 147 (148)
T ss_dssp TTSSEEEEEEEECC
T ss_pred CCCEEEEEEEEECC
T ss_conf 99837999999839
No 3
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=8.2e-28 Score=211.09 Aligned_cols=151 Identities=24% Similarity=0.359 Sum_probs=123.6
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 01621005899999999997535440590899982999995226269899999999999884058999099999983254
Q 004636 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSE 490 (740)
Q Consensus 411 ~l~~~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~i~i~~~~~~~~ 490 (740)
++..+.+||.+++++++..++.. .+. +.+.+.+..+ .+.+|+.+|+|++.||++||+||+ .+.|.|.......
T Consensus 4 el~~e~~dl~~ll~e~i~~~~~~--~~~--i~~~~~~~~~-~v~~d~~~l~~vl~NLi~NAik~~-~~~i~i~~~~~~~- 76 (161)
T d1bxda_ 4 EMPMEMADLNAVLGEVIAAESGY--ERE--IETALYPGSI-EVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPN- 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCSS--SCC--EEEECCSSCC-CEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC--CCC--EEEEECCCCE-EEEECHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEECC-
T ss_conf 79865284999999999974011--285--8999569985-899889999999999999999857-9839999998699-
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 33368999876778789249899998519889948844551003346655678888734058999999998199999996
Q 004636 491 SLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIES 570 (740)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S 570 (740)
++.|+|+|+|+||+++++++||+||||.+.. +..+|+||||+|||+|++.|||+|+++|
T Consensus 77 -------------------~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~--~~~~g~GLGL~ivk~iv~~hgG~i~v~s 135 (161)
T d1bxda_ 77 -------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLAIVQRIVDNHNGMLELGT 135 (161)
T ss_dssp -------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEE
T ss_pred -------------------EEEEEEEECCCCCCHHHHHHHHCCCEECCCC--CCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf -------------------9999999858788999999874784488788--8589877459999999998799899997
Q ss_pred ECCCCEEEEEEEEEECCCCC
Q ss_conf 04994189999997078988
Q 004636 571 EGLGKGCTAIFIVKLGIPEH 590 (740)
Q Consensus 571 ~~~g~G~~f~~~l~~~~~~~ 590 (740)
. +++|++|++++|++..+.
T Consensus 136 ~-~~~Gt~f~v~lPl~~~~~ 154 (161)
T d1bxda_ 136 S-ERGGLSIRAWLPVPVTRA 154 (161)
T ss_dssp E-TTTEEEEEEEECCCSCCC
T ss_pred C-CCCCEEEEEEEEEECCCC
T ss_conf 2-999189999998326667
No 4
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=1.6e-27 Score=208.99 Aligned_cols=144 Identities=20% Similarity=0.361 Sum_probs=124.3
Q ss_pred EEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC
Q ss_conf 10058999999999975354405908999829999952262698999999999998840589990999999832543336
Q 004636 415 GTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRD 494 (740)
Q Consensus 415 ~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~ 494 (740)
+.+++.+++++++..++..+..+++.+.++.++++ .+.+|+.+|.|++.||++||+||+++ .+.|.+.....
T Consensus 2 e~~~l~~ll~~~~~~~~~~~~~k~i~i~~~~~~~~--~~~~d~~~l~~vl~NLl~NAik~~~~-~i~i~~~~~~~----- 73 (146)
T d1id0a_ 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE----- 73 (146)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC--EEEECHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEECC-----
T ss_conf 76579999999999999999978979999849995--79988999999999999999986009-88999996099-----
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 89998767787892498999985198899488445510033466556788887340589999999981999999960499
Q 004636 495 SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (740)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g 574 (740)
.+.|+|+|+|+||++++++++|+||||.+.. .+|+||||+|||+|++.|||+|+++|. .+
T Consensus 74 ---------------~~~i~V~D~G~Gi~~~~~~~iF~~F~r~~~~----~~G~GLGL~I~k~iv~~h~G~i~~~s~-~~ 133 (146)
T d1id0a_ 74 ---------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGES-ML 133 (146)
T ss_dssp ---------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEEC-TT
T ss_pred ---------------EEEEEEEEECCCCCHHHHHHHCCCCCCCCCC----CCCEEHHHHHHHHHHHHCCCEEEEEEC-CC
T ss_conf ---------------8999999507999989999972896348999----897037999999999985998999974-99
Q ss_pred CEEEEEEEEEEC
Q ss_conf 418999999707
Q 004636 575 KGCTAIFIVKLG 586 (740)
Q Consensus 575 ~G~~f~~~l~~~ 586 (740)
+|++|++.+|..
T Consensus 134 ~Gt~f~i~lP~~ 145 (146)
T d1id0a_ 134 GGARMEVIFGRQ 145 (146)
T ss_dssp SSEEEEEEECCC
T ss_pred CEEEEEEEEECC
T ss_conf 846999999488
No 5
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.94 E-value=9.9e-27 Score=203.41 Aligned_cols=148 Identities=17% Similarity=0.227 Sum_probs=117.7
Q ss_pred EEECHHHHHHHHHHHHHHHHHHC---CEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCC---------EEEE
Q ss_conf 10058999999999975354405---90899982999995226269899999999999884058999---------0999
Q 004636 415 GTFNLHAVFREVLNLIKPIASVK---KLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG---------NISI 482 (740)
Q Consensus 415 ~~~~L~~li~~~~~~~~~~~~~k---~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g---------~i~i 482 (740)
..+++.++++++++.++..+..+ ...+.+..+++. .+.+|+.+|.|||.||+.||+||++++ .|.+
T Consensus 8 t~~~l~~lv~~~~~~~~~~~~~~~~~~~~v~i~~~~~~--~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~~I~i 85 (193)
T d1gkza2 8 TRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA--RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVI 85 (193)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC--CEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC--EEEECHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEE
T ss_conf 77999999999999999999986098857886057770--3556699999999999999998441570440356643999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCC-------------------
Q ss_conf 9998325433368999876778789249899998519889948844551003346655678-------------------
Q 004636 483 TGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALR------------------- 543 (740)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~------------------- 543 (740)
..... ..++.|+|+|+|+||+++.+++||+|||+++....+
T Consensus 86 ~~~~~--------------------~~~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (193)
T d1gkza2 86 TIANN--------------------DVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQS 145 (193)
T ss_dssp EEEEC--------------------SSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------------------------
T ss_pred EEECC--------------------CCEEEEEEECCCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99705--------------------8889999955999879999997567761445555544456432355443343334
Q ss_pred -CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEE
Q ss_conf -888734058999999998199999996049941899999970
Q 004636 544 -NSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (740)
Q Consensus 544 -~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~ 585 (740)
...|+||||+|||++++.|||+|+++|. +|+||+|++.||.
T Consensus 146 ~~~~G~GlGL~i~k~ive~~gG~i~v~S~-~g~Gt~f~l~L~~ 187 (193)
T d1gkza2 146 GPMHGFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRH 187 (193)
T ss_dssp -CCSCSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CCCCEEEEEEECC
T ss_conf 55456786789999999987998999944-9985699999889
No 6
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=99.94 E-value=4.1e-26 Score=199.03 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=116.4
Q ss_pred EECHHHHHHHHHHHHHHHHHHC-----CEEEEEE--ECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCC--------EE
Q ss_conf 0058999999999975354405-----9089998--2999995226269899999999999884058999--------09
Q 004636 416 TFNLHAVFREVLNLIKPIASVK-----KLLVALN--LAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEG--------NI 480 (740)
Q Consensus 416 ~~~L~~li~~~~~~~~~~~~~k-----~i~l~~~--~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g--------~i 480 (740)
.+++.++++++.+..+..+... .+.+... .....+..+.+|+.+|.||+.||+.||+||++++ .|
T Consensus 10 ~~~l~~ii~da~e~~r~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~I 89 (190)
T d1jm6a2 10 NCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPI 89 (190)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 99999999999999999999863247443058972258999889998799999999999999999725268644324318
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCC-----CCCCHHHHHH
Q ss_conf 99999832543336899987677878924989999851988994884455100334665567888-----8734058999
Q 004636 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNS-----SGSGLGLAIC 555 (740)
Q Consensus 481 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~-----~GtGLGLaI~ 555 (740)
.+...... ..+.|+|+|+|+|||++.++++|+||||++....+.. +|+||||+||
T Consensus 90 ~v~~~~~~--------------------~~~~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~ 149 (190)
T d1jm6a2 90 KIMVALGE--------------------EDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPIS 149 (190)
T ss_dssp EEEEEECS--------------------SEEEEEEEECSCCCCGGGTTGGGCTTCCCSCCC---------CCSSCHHHHH
T ss_pred EEEEEECC--------------------EEEEEEEECCCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99998177--------------------0899999016999989999998575625677676755443448887529999
Q ss_pred HHHHHHCCCEEEEEEECCCCEEEEEEEEEEC
Q ss_conf 9999981999999960499418999999707
Q 004636 556 KRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 586 (740)
Q Consensus 556 k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~~ 586 (740)
|++|+.|||+|+++|. +|+|++|++++|..
T Consensus 150 k~ive~hgG~I~v~s~-~g~Gt~f~i~lP~~ 179 (190)
T d1jm6a2 150 RLYAKYFQGDLQLFSM-EGFGTDAVIYLKAL 179 (190)
T ss_dssp HHHHHHTTCEEEEEEE-TTTEEEEEEEEESS
T ss_pred HHHHHHCCCEEEEEEC-CCCCEEEEEEEECC
T ss_conf 9999987998999954-99954999998589
No 7
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=5.2e-26 Score=198.32 Aligned_cols=154 Identities=25% Similarity=0.317 Sum_probs=121.7
Q ss_pred EEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC
Q ss_conf 10058999999999975354405908999829999952262698999999999998840589990999999832543336
Q 004636 415 GTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRD 494 (740)
Q Consensus 415 ~~~~L~~li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~ 494 (740)
...++++++++++..++... .+++.+..++++++|. +.+|+.+|+|||.||+.||++|+..+..............
T Consensus 2 ~~~~i~evie~v~~l~~~~~-~~~i~i~~~~~~~~~~-v~~D~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~~~-- 77 (156)
T d1r62a_ 2 VTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQL-- 77 (156)
T ss_dssp EEECHHHHHHHHHHHHTTTC-CTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEE--
T ss_pred CCCCHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCE-EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEE--
T ss_conf 05459999999999999876-6998999984999977-9988999999999999999986343897222000113202--
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 89998767787892498999985198899488445510033466556788887340589999999981999999960499
Q 004636 495 SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (740)
Q Consensus 495 ~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g 574 (740)
.........++.+.|.|||+||+++.++++|+||++++ ..|+||||+|||+|++.|||+|+++|. +|
T Consensus 78 ------~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~pf~s~k------~~G~GLGL~i~~~iv~~hgG~i~v~s~-~g 144 (156)
T d1r62a_ 78 ------TLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR------EGGTGLGLSIARNLIDQHSGKIEFTSW-PG 144 (156)
T ss_dssp ------EETTEEEEEEEEEEEEEECTTC--------------------------CHHHHHHHHHHHHTTCEEEEEEE-TT
T ss_pred ------EECCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCEECC------CCCCCCHHHHHHHHHHHCCCEEEEEEE-CC
T ss_conf ------10012578558999813789989899975165630237------899984389999999987998999995-99
Q ss_pred CEEEEEEEEEEC
Q ss_conf 418999999707
Q 004636 575 KGCTAIFIVKLG 586 (740)
Q Consensus 575 ~G~~f~~~l~~~ 586 (740)
|++|++.+|+.
T Consensus 145 -Gt~f~i~LPl~ 155 (156)
T d1r62a_ 145 -HTEFSVYLPIR 155 (156)
T ss_dssp -EEEEEEEEEEE
T ss_pred -CEEEEEEEEEC
T ss_conf -58999999941
No 8
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.91 E-value=7.1e-23 Score=176.11 Aligned_cols=131 Identities=72% Similarity=1.222 Sum_probs=119.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCC
Q ss_conf 788872377606846789999999875199599969998899987899929998368999999999999987510-4899
Q 004636 608 TNFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFT-RRHE 686 (740)
Q Consensus 608 ~~~~~~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlil~D~~mp~~dG~e~~~~ir~~~~-~~~~ 686 (740)
+++.|.+||||||++.+|..+..+|+..||++..+.||.+|++.++++||+||+|+.||+|||++++++||+... ...+
T Consensus 3 ~d~~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~dlillD~~mP~~dG~el~~~ir~~~~~~~~~ 82 (134)
T d1dcfa_ 3 SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (134)
T ss_dssp CCCTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 98999999999599999999999999879999998999999997643997679873368986699999999860002589
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 9569999158998879999982898599799998899999999970655455
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLFE 738 (740)
Q Consensus 687 ~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~ 738 (740)
.++||++|++...+...+++++|+++|+.||++.++|...++++++.+.+++
T Consensus 83 ~~~ii~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~r~~~e 134 (134)
T d1dcfa_ 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPRVLYE 134 (134)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCCCCCC
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 8769998589999999999986999899898999999999999853130479
No 9
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.86 E-value=1.2e-20 Score=160.21 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=108.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 2377606846789999999875199599969998899987-899929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
+||||||||+.++..++..|+..||+|..+.||++|++.+ ...||+|++|+.||++||++++++||+. .+.+|||
T Consensus 1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dliilD~~mP~~~G~e~~~~i~~~----~~~~pvi 76 (119)
T d2pl1a1 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN----DVSLPIL 76 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHT----TCCSCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEHHCCCCCCHHHHHHHHHHHC----CCCCCEE
T ss_conf 989999689999999999999879999997887999999983464555342039995058899999862----9665457
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 991589988799999828985997999988999999999706
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
++|+..+.....+++++|+++|+.||++.++|..++++++++
T Consensus 77 ~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lrR 118 (119)
T d2pl1a1 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (119)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 654169999999999869989997989999999999999815
No 10
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.86 E-value=3.1e-20 Score=157.34 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 723776068467899999998751995999699988999878-9992999836899999999999998751048999569
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLI 690 (740)
Q Consensus 612 ~~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~I 690 (740)
..+||||||++..|..++..|+..||+|..++||++|++.+. .+||+|++|+.||+|||++++++||+. .+.++|
T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~----~~~~~i 78 (123)
T d1dbwa_ 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL----KINIPS 78 (123)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT----TCCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC----CCCCEE
T ss_conf 9989999799999999999999879999997787999999760688699973457655235999999824----988759
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 9991589988799999828985997999988999999999706
Q 004636 691 VALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 691 I~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
|++|++.+.+...+++++|+++|+.||++.++|..++++++++
T Consensus 79 I~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~a~e~ 121 (123)
T d1dbwa_ 79 IVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (123)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9998368999999999879988998979999999999999986
No 11
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.86 E-value=2.3e-20 Score=158.29 Aligned_cols=118 Identities=16% Similarity=0.285 Sum_probs=108.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 3776068467899999998751995999699988999878-999299983689999999999999875104899956999
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II~ 692 (740)
+|||||||+.++..++..|+..||++..+.||.+|++.+. ..||+|++|+.||+|||++++++||+... .+.+|||+
T Consensus 2 kILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~lr~~~~--~~~~pvi~ 79 (121)
T d1zesa1 2 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESM--TRDIPVVM 79 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHSSSSCCSEEEECSSCTTSCHHHHHHHHHHSTT--TTTSCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCC--CCCCEEEE
T ss_conf 8999968999999999999987999999878599999997158878974057899979999999984766--79992999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 91589988799999828985997999988999999999706
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
+|++.+.....++++.|+++|+.||++.++|...+++++++
T Consensus 80 lt~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~v~~~lrR 120 (121)
T d1zesa1 80 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 120 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 98879999999999879988997989999999999999817
No 12
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.86 E-value=2.3e-21 Score=165.41 Aligned_cols=118 Identities=21% Similarity=0.320 Sum_probs=107.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 72377606846789999999875199599-9699988999878-999299983689999999999999875104899956
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~vLivdD~~~~r~~l~~~L~~~g~~v~-~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~ 689 (740)
+.+||||||++.+|..+..+|+..||+++ .|+||.+|++.+. ..||+|++|++||+|||++++++||+. . ..|
T Consensus 3 p~kILiVDD~~~~r~~l~~~L~~~g~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP~~dG~e~~~~ir~~----~-~~p 77 (190)
T d1s8na_ 3 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASK----R-IAP 77 (190)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT----T-CSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHC----C-CCC
T ss_conf 98899990989999999999998799799998999999999753799999996403486159999988865----9-998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 999915899887999998289859979999889999999997065
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 690 II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
|+++|++.+.+...+|+++||+||+.||+++++|..+++.++.+.
T Consensus 78 Ii~lTa~~~~~~~~~al~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 122 (190)
T d1s8na_ 78 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 122 (190)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 899957899999999998699874669999999999999999866
No 13
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=99.86 E-value=2.3e-20 Score=158.29 Aligned_cols=116 Identities=17% Similarity=0.332 Sum_probs=107.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23776068467899999998751995999699988999878-99929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
.||||||||+.+|..++..|+..||++..+.||.+|++.+. ..||+|++|+.||++||++++++||+. .+..|||
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~----~~~~pvi 77 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVI----DENIRVI 77 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHH----CTTCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH----CCCCCEE
T ss_conf 889999699999999999999869989995998999999980799889981458999789999999971----9999689
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99158998879999982898599799998899999999970
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLE 732 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~ 732 (740)
++|++.+.....+++++|+++|+.||++.++|..+++++|+
T Consensus 78 ~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~L~ 118 (119)
T d1peya_ 78 IMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 118 (119)
T ss_dssp EEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 97068999999999987998899899999999999998777
No 14
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=99.85 E-value=1.7e-20 Score=159.16 Aligned_cols=119 Identities=21% Similarity=0.270 Sum_probs=109.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23776068467899999998751995999699988999878-99929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
++|||||||+.++..++.+|+..||.+..+.||.+|++.+. ..||+|++|+.||+|||++++++||+. .+..|||
T Consensus 1 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlil~D~~mP~~~G~el~~~lr~~----~~~~pvI 76 (140)
T d1qkka_ 1 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILAL----DPDLPMI 76 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHH----CTTSCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHH----CCCCCEE
T ss_conf 989999789999999999999879989982774789999745585167776336898799999999973----8889689
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 99158998879999982898599799998899999999970655
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~ 735 (740)
++|++.+.+...+++++||+||+.||++.++|...++++++.+.
T Consensus 77 ~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~ 120 (140)
T d1qkka_ 77 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 120 (140)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 89899999999999986999842699989999999999999999
No 15
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.85 E-value=4.8e-20 Score=156.00 Aligned_cols=118 Identities=29% Similarity=0.507 Sum_probs=106.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHC------CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 23776068467899999998751995-999699988999878------99929998368999999999999987510489
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCD-VMTVSSVEECFRVVS------HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~-v~~a~~g~eal~~~~------~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~ 685 (740)
.||||||||+.++..++.+|+..||. +..|.||++|++.++ ++||+||+|++||+|||++++++||+...
T Consensus 2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~--- 78 (128)
T d2r25b1 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLG--- 78 (128)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSC---
T ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC---
T ss_conf 59999969899999999999986995999976839999999864402577887999707999888999999997068---
Q ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 995699991589988799999828985997999988999999999706
Q 004636 686 ERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 686 ~~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
...|||++|++.+.....+|+++|+++|+.||++.++|...+++++..
T Consensus 79 ~~~piI~lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 126 (128)
T d2r25b1 79 YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 126 (128)
T ss_dssp CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 998099997779999999999869989998989999999999999984
No 16
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.85 E-value=6.5e-21 Score=162.20 Aligned_cols=118 Identities=20% Similarity=0.321 Sum_probs=108.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 2377606846789999999875199599969998899987-899929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
++|||||||+.++..+...|+..||+|.++.||.+|++.+ ...||+|++|++||+|||++++++||+. .+..|||
T Consensus 2 PkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~----~~~~piI 77 (121)
T d1ys7a2 2 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAM----DNDVPVC 77 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHT----TCCCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHC----CCCCEEE
T ss_conf 989999899999999999999879999998788999999982798789977603675207899999964----9998799
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9915899887999998289859979999889999999997065
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
++|+..+.....+++++|+++|+.||++.++|..+++++++++
T Consensus 78 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rr 120 (121)
T d1ys7a2 78 VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 120 (121)
T ss_dssp EEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9982189999999998799899989899999999999999757
No 17
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=99.85 E-value=1.8e-20 Score=159.08 Aligned_cols=120 Identities=21% Similarity=0.340 Sum_probs=109.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23776068467899999998751995999699988999878-99929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
.+|||||||+.++..++.+|+..||++..+.||.+|++.+. ..||+|++|+.||+|||++++++||+... ....|||
T Consensus 2 krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~mp~~dG~el~~~ir~~~~--~~~iPii 79 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDD--LAHIPVV 79 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTT--TTTSCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCEE
T ss_conf 66999988899999999999987999999788899999998179888998750279848999999982887--6899969
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9915899887999998289859979999889999999997065
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
++|+........+++++|+++|+.||++.++|.+.++++++++
T Consensus 80 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~r~ 122 (123)
T d1mb3a_ 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (123)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9998547899999997699899989899999999999998279
No 18
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.85 E-value=2.2e-20 Score=158.46 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=109.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 2377606846789999999875199599969998899987-899929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
.+|||||||+.++..++..|+..||.|..+.||++|++.+ ...||+|++|+.||++||+++++++|+. .+.+|||
T Consensus 2 irILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~----~~~~piI 77 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRES----GVNTPVL 77 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHT----TCCCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC----CCCCCEE
T ss_conf 789999189999999999999879999997566999999986276522001355662167899999853----8998489
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9915899887999998289859979999889999999997065
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
++|++.+.....+++++|+++|+.||+++++|..+++++++++
T Consensus 78 ~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~r~ 120 (122)
T d1kgsa2 78 MLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 120 (122)
T ss_dssp EEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9727799999999998599651429999999999999999870
No 19
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=99.84 E-value=3e-20 Score=157.43 Aligned_cols=119 Identities=24% Similarity=0.461 Sum_probs=109.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 2377606846789999999875199599969998899987-899929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
++|||||||+..+..++.+|+..||+|..+.||++|+..+ ...||+||+|+.||+++|++++++||+. .+.+|||
T Consensus 1 mkILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvilD~~mp~~~G~e~~~~lr~~----~~~~piI 76 (137)
T d1ny5a1 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKER----SPETEVI 76 (137)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHH----CTTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH----CCCCCEE
T ss_conf 979999558999999999999879999998889999987302555530177766544689999999984----8899899
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 99158998879999982898599799998899999999970655
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~ 735 (740)
++|++.+.....+++++|++||+.||++.++|...++++++.+.
T Consensus 77 ~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 120 (137)
T d1ny5a1 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120 (137)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 89898999999999986998888497999999999999999999
No 20
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.84 E-value=3.6e-20 Score=156.92 Aligned_cols=117 Identities=25% Similarity=0.384 Sum_probs=107.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23776068467899999998751995999699988999878-99929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
.+|||||||+.++..++..|++.||+|..+.||++|++.+. .+||+|++|+.||++||+++++++|+. .+.++||
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~mp~~~G~~~~~~~r~~----~~~~~ii 78 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQ----KLMFPIL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT----TCCCCEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCC----CCCCEEE
T ss_conf 879999899999999999999889999998788999998743566589731454699982366553105----8998899
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 991589988799999828985997999988999999999706
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
++|+........+++++|+++|+.||+++++|...+++++++
T Consensus 79 ~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~lrR 120 (121)
T d1mvoa_ 79 MLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120 (121)
T ss_dssp EEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 998138999999999879989998989999999999999846
No 21
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.84 E-value=6.3e-20 Score=155.22 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=106.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 3776068467899999998751995999699988999878-999299983689999999999999875104899956999
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II~ 692 (740)
+|||||||+.++..++..|+..||+|..+.||++|++.+. .+||+|++|+.||++||+++++++++. +..|||+
T Consensus 2 rILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlillD~~mp~~~G~~~~~~i~~~-----~~~pvI~ 76 (117)
T d2a9pa1 2 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKT-----SSVPILM 76 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHTT-----CCCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHC-----CCCCEEE
T ss_conf 89999799999999999999879999998787999999983698789850455799962899999867-----9998899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 91589988799999828985997999988999999999706
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 693 lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
+|+..+.....+++++|+++|+.||+++++|.+.+++++++
T Consensus 77 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrR 117 (117)
T d2a9pa1 77 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 117 (117)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 96689999999999869989998989999999999998197
No 22
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=2.6e-20 Score=157.97 Aligned_cols=116 Identities=16% Similarity=0.312 Sum_probs=106.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 3776068467899999998751995999699988999878-999299983689999999999999875104899956999
Q 004636 614 KVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 614 ~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II~ 692 (740)
+|||||||+.++..++..|+..||+|..+.||++|++.+. ..||+|++|+.||+|||++++++||+. +..|||+
T Consensus 2 nILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dliilD~~mP~~~G~e~~~~ir~~-----~~~piI~ 76 (119)
T d1zh2a1 2 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW-----SAVPVIV 76 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTT-----CCCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHC-----CCCCEEE
T ss_conf 79999779999999999999879999996888999999982599789942666799871589998723-----5786799
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 915899887999998289859979999889999999997065
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 693 lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
+|+..+.....+++++|+++|+.||++.++|..++++++++.
T Consensus 77 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~ 118 (119)
T d1zh2a1 77 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 118 (119)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 951589999999998699999989899999999999997431
No 23
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=9.4e-20 Score=153.97 Aligned_cols=116 Identities=22% Similarity=0.410 Sum_probs=107.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 2377606846789999999875199599969998899987-899929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
++|||||||+..+..+...|+..||+|..+.||++|++.+ ..+||+|++|+.||+++|+++++++|+. +.+|||
T Consensus 3 p~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~~-----~~~pii 77 (121)
T d1xhfa1 3 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ-----ANVALM 77 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH-----CCCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHC-----CCCCEE
T ss_conf 979999899999999999999879999998886999999984087789861134776672789999866-----998599
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 991589988799999828985997999988999999999706
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
++|++.+.....+++++|++||+.||+++++|..++++++++
T Consensus 78 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~~l~R 119 (121)
T d1xhfa1 78 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 119 (121)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 998889999999999859887885989999999999999855
No 24
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.84 E-value=5.5e-20 Score=155.59 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=109.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23776068467899999998751995999699988999878-99929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
.+||||||++.++..++.+|+..||+|..+.||.+|++.+. ..||+|++|+.||+++|+++++.+|.... ....|||
T Consensus 2 arILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlil~D~~~p~~~G~~~~~~ir~~~~--~~~~piI 79 (139)
T d1w25a1 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPT--TRHIPVV 79 (139)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTT--TTTSCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCC--CCCCCEE
T ss_conf 88999989899999999999987999999746325455431354102211012468984288877664132--4689889
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 99158998879999982898599799998899999999970655
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~ 735 (740)
++|++.+.....+++++|++||+.||++.++|...++++++.+.
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lr~~~ 123 (139)
T d1w25a1 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL 123 (139)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 99707999999999986998888899999999999999999999
No 25
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=3.4e-20 Score=157.12 Aligned_cols=119 Identities=24% Similarity=0.433 Sum_probs=109.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 872377606846789999999875199599969998899987-8999299983689999999999999875104899956
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 611 ~~~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~ 689 (740)
.+++|||||||+.++..++.+|+..||.+..+.||.+|++.+ .++||+||+|+.||+|||++++++||+.. +..|
T Consensus 7 ~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~----~~~p 82 (133)
T d2ayxa1 7 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG----LTLP 82 (133)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHH----CCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHC----CCCC
T ss_conf 998899998999999999999997598899977487789987345745999953689998899999999768----8988
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 99991589988799999828985997999988999999999706
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
|+++|++.+.+...+++++|+++|+.||++.++|...++.+++.
T Consensus 83 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~r 126 (133)
T d2ayxa1 83 VIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 126 (133)
T ss_dssp EEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 89996669999999999869988998989999999999999999
No 26
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=1.3e-19 Score=152.85 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=109.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 872377606846789999999875199-5999699988999878-99929998368999999999999987510489995
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHLGC-DVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 611 ~~~~vLivdD~~~~r~~l~~~L~~~g~-~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~ 688 (740)
++++||||||++.+|..++.+|+..|+ .|..+++|.+|++.+. ..||+|++|++||++||++++++||+... ...+
T Consensus 3 k~lriLvVDD~~~~r~~i~~~L~~~g~~~v~~a~~g~~a~~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~--~~~~ 80 (128)
T d1jbea_ 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGA--MSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--C--CTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCC--CCCC
T ss_conf 99989999698999999999999879948999668567999985479988997446445888999999984766--7899
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 6999915899887999998289859979999889999999997065
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 689 ~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
|||++|++.......+++++|+++|++||++.++|...+++++++.
T Consensus 81 piI~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~ 126 (128)
T d1jbea_ 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 6899977699999999998799889989899999999999999874
No 27
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=1.8e-19 Score=152.01 Aligned_cols=116 Identities=16% Similarity=0.340 Sum_probs=106.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 2377606846789999999875199599969998899987-899929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
.+|||||||+.++..+..+|+..||.|..++|++++++.+ .+.||+|++|+.||++||+++++.+|. ....+||
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~dliilD~~mp~~~g~~~~~~~~~-----~~~~piI 76 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRE-----RSTVGII 76 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHT-----TCCCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHC-----CCCCEEE
T ss_conf 98999909999999999999987999999899999999998549988862023236236899999760-----4798499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 991589988799999828985997999988999999999706
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
++|+..+.....+++++|++||+.||++.++|..++++++++
T Consensus 77 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR 118 (120)
T d1zgza1 77 LVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 118 (120)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 998139999999999879999998989999999999999716
No 28
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=1.7e-19 Score=152.15 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=109.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 7237760684678999999987519--95999699988999878-99929998368999999999999987510489995
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLG--CDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 612 ~~~vLivdD~~~~r~~l~~~L~~~g--~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~ 688 (740)
+.+||||||++.+|..++.+|+..| +.+..++||.++++.+. ..||++++|+.||++||++++++||+. .+..
T Consensus 2 Pi~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~~~G~el~~~ir~~----~~~~ 77 (138)
T d1a04a2 2 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK----SLSG 77 (138)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHS----CCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH----CCCC
T ss_conf 998999889999999999999858995799997999999999985699799986578999889999999953----9999
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 69999158998879999982898599799998899999999970655455
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRVLFE 738 (740)
Q Consensus 689 ~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~ 738 (740)
+++++|++.+.....+++++|+++|+.||+++++|..++++++.++.++.
T Consensus 78 ~vivlt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~v~~g~~~~~ 127 (138)
T d1a04a2 78 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLS 127 (138)
T ss_dssp EEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCC
T ss_pred CEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 88999987899999999986998899798999999999999987998679
No 29
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.83 E-value=1.1e-19 Score=153.58 Aligned_cols=115 Identities=18% Similarity=0.351 Sum_probs=105.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 72377606846789999999875199599-9699988999878-999299983689999999999999875104899956
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVM-TVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~vLivdD~~~~r~~l~~~L~~~g~~v~-~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~ 689 (740)
|.+||||||++.++..++.+|++.||+|. .|+||.+|++.+. ..||+|++|+.||++||++++++||+. .+.+|
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~~~G~e~~~~ir~~----~~~~p 76 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKI----DPNAK 76 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHH----CTTCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH----CCCCC
T ss_conf 99999996989999999999997699669998899999999983568899984589999789999999975----98996
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 99991589988799999828985997999988999999999
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 690 II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~ 730 (740)
||++|++.+.....++++.|+++|+.||+++++|.++++++
T Consensus 77 vi~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v 117 (118)
T d1u0sy_ 77 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 117 (118)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 89998328999999999869989998989999999999986
No 30
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=99.83 E-value=2.3e-19 Score=151.22 Aligned_cols=120 Identities=13% Similarity=0.221 Sum_probs=105.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHCC--------CCEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 7237760684678999999987519--959996999889998789--------992999836899999999999998751
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLG--CDVMTVSSVEECFRVVSH--------EHQVVFMDVCVPGIDGYEVAVHIHDKF 681 (740)
Q Consensus 612 ~~~vLivdD~~~~r~~l~~~L~~~g--~~v~~a~~g~eal~~~~~--------~~dlil~D~~mp~~dG~e~~~~ir~~~ 681 (740)
+.+||||||++.++..++..|++.| +++..+.||.+|++.+.+ .||+||+|+.||+|||++++++||+..
T Consensus 3 pk~ILiVdD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir~~~ 82 (144)
T d1i3ca_ 3 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 98899997999999999999998699849999789999999998542221257898999978643454168999998572
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 0489995699991589988799999828985997999988999999999706
Q 004636 682 TRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 682 ~~~~~~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
. ...+|||++|++.+.....+++++|+++|+.||++.++|.+.+++++..
T Consensus 83 ~--~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l~~~ 132 (144)
T d1i3ca_ 83 D--LKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 132 (144)
T ss_dssp T--TTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred C--CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 4--4798299997889999999999779988997989999999999999998
No 31
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=99.83 E-value=7.7e-20 Score=154.59 Aligned_cols=121 Identities=21% Similarity=0.420 Sum_probs=109.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCE-EEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 8723776068467899999998751995-99969998899987-899929998368999999999999987510489995
Q 004636 611 PGLKVLVMDENGVSRSVTKGLLLHLGCD-VMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 611 ~~~~vLivdD~~~~r~~l~~~L~~~g~~-v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~ 688 (740)
...+||||||++.++..++..|+..||. +..++||++|++.+ ..+||+||+|+.||++||+++++.+|+... ...+
T Consensus 5 ~~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~~~--~~~~ 82 (129)
T d1p6qa_ 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPA--TKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTT--STTC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCC--CCCC
T ss_conf 78789999798999999999999879949999779899999998189875876550479975999999983855--6798
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 699991589988799999828985997999988999999999706
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 689 ~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
|||++|++.+.....+++++|+++|+.||++.++|..++++++..
T Consensus 83 pii~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~vl~~ 127 (129)
T d1p6qa_ 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 299998039999999999879998998989999999999999974
No 32
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=99.83 E-value=8.6e-20 Score=154.22 Aligned_cols=119 Identities=18% Similarity=0.367 Sum_probs=106.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHCC-----------CCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 2377606846789999999875199--59996999889998789-----------9929998368999999999999987
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGC--DVMTVSSVEECFRVVSH-----------EHQVVFMDVCVPGIDGYEVAVHIHD 679 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~--~v~~a~~g~eal~~~~~-----------~~dlil~D~~mp~~dG~e~~~~ir~ 679 (740)
.+||||||++.++..++.+|++.|+ .+..+.||.+|++.+.+ .||+||+|++||+|||++++++||+
T Consensus 7 ~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD~~mP~~~G~el~~~ir~ 86 (149)
T d1k66a_ 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQ 86 (149)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHH
T ss_conf 81899989999999999999976996279997784899999984221100001458886775244468775799999985
Q ss_pred HHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 510489995699991589988799999828985997999988999999999706
Q 004636 680 KFTRRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 680 ~~~~~~~~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
... ...+|||++|++.+.....+++++|+++|+.||++.++|...++++++.
T Consensus 87 ~~~--~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 138 (149)
T d1k66a_ 87 DEV--LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp STT--GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCC--CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 621--3799089996879999999999779988997999999999999999999
No 33
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.83 E-value=2.9e-20 Score=157.58 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=108.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23776068467899999998751995999699988999878-99929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
.+|||||||+.++..++..|+..||+|..+.||.+|++.+. .+||+|++|+.||++||++++++||+. .+..|||
T Consensus 4 ~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~~mp~~~G~el~~~l~~~----~~~~piI 79 (123)
T d1krwa_ 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQR----HPMLPVI 79 (123)
T ss_dssp CEEEEESSSHHHHHHHHHHHHHTTCEEEEESSSHHHHHHHTTCCCSEEEECCSSSSSTTHHHHHHHHHH----SSSCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEHHHCCCCHHHHHHHHHHHH----CCCCEEE
T ss_conf 989999899999999999999779989995888999999982788799865423785279999999985----7998099
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9915899887999998289859979999889999999997065
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
++|++.+.+...+++++|+++|+.||++.++|..++++++++.
T Consensus 80 ~~t~~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l~~~ 122 (123)
T d1krwa_ 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (123)
T ss_dssp ESCCCSCHHHHHHHHHHTEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9966899999999998699748849699999999999999722
No 34
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.83 E-value=7.9e-20 Score=154.51 Aligned_cols=122 Identities=13% Similarity=0.223 Sum_probs=104.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 8872377606846789999999875199599969998899987-899929998368999999999999987510489995
Q 004636 610 FPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 610 ~~~~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~ 688 (740)
..+.+||||||++.++..+...|+..||.+.. ++.++.... ..+||+||+|++||+|||++++++||+... .+..
T Consensus 11 ~~~~rILiVDD~~~~~~~l~~~L~~~g~~v~~--~~~~~~~~~~~~~~DlillD~~mP~~dG~el~~~ir~~~~--~~~i 86 (153)
T d1w25a2 11 GLGGRVLIVDDNERQAQRVAAELGVEHRPVIE--SDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEER--TRQL 86 (153)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHTTTSEEEEE--CCHHHHHHHHHSSCSEEEEETTCSSSCHHHHHHHHHTSGG--GTTC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEE--CCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCC--CCCC
T ss_conf 89996999969999999999999977989997--0579999983699999999786401111478999995410--2543
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 69999158998879999982898599799998899999999970655
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 689 ~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~ 735 (740)
|||++|++.+.....+++++|++||+.|||++++|..+++..++.+.
T Consensus 87 PiI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~ 133 (153)
T d1w25a2 87 PVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR 133 (153)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 05886358899999999866854699799999999999999999999
No 35
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=99.83 E-value=2.8e-19 Score=150.62 Aligned_cols=119 Identities=19% Similarity=0.281 Sum_probs=105.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHCC--------CCEEEEEECCCCCCCHHHHHHHHHHHHC
Q ss_conf 237760684678999999987519--959996999889998789--------9929998368999999999999987510
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLG--CDVMTVSSVEECFRVVSH--------EHQVVFMDVCVPGIDGYEVAVHIHDKFT 682 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g--~~v~~a~~g~eal~~~~~--------~~dlil~D~~mp~~dG~e~~~~ir~~~~ 682 (740)
.+|||||||+.++..++..|++.| |++..+.||.+|++.+.+ .||+||+|++||+|||++++++||+...
T Consensus 3 krILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~dG~el~~~ir~~~~ 82 (140)
T d1k68a_ 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLDLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 86999989999999999999976997599997999999999997087642479978988622433447699999885846
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 489995699991589988799999828985997999988999999999706
Q 004636 683 RRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 683 ~~~~~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
...+|||++|++.+.....+++++|+++|+.||++.++|...++++++.
T Consensus 83 --~~~iPvI~ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~~ 131 (140)
T d1k68a_ 83 --LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp --GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred --CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf --5899689995789999999999879989997989999999999999998
No 36
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=99.82 E-value=2.1e-19 Score=151.53 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=107.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 23776068467899999998751995999699988999878-99929998368999999999999987510489995699
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIV 691 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II 691 (740)
++|||||||+.++..+..+|+..||.|..++++++|++.+. ..||+||+|+.||++||+++++++++. .+.++|+
T Consensus 3 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dliilD~~mp~~~G~~~~~~i~~~----~~~~~ii 78 (128)
T d1yioa2 3 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAI----SDGIPIV 78 (128)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHT----TCCCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHCCCCHHHHHHHHHHHH----CCCCEEE
T ss_conf 879999899999999999999869971111449999999874588875023435652258999999863----8997699
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9915899887999998289859979999889999999997065
Q 004636 692 ALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 692 ~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
++|++.+.....++++.|+++|+.||++.++|...++++++..
T Consensus 79 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 121 (128)
T d1yioa2 79 FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 121 (128)
T ss_dssp EEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9998898999999998799889989799999999999999999
No 37
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.82 E-value=2.3e-19 Score=151.21 Aligned_cols=118 Identities=20% Similarity=0.397 Sum_probs=104.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CEE-EEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 237760684678999999987519-959-99699988999878-999299983689999999999999875104899956
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLG-CDV-MTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g-~~v-~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~ 689 (740)
.+|||||||+.++..++..|+..| +.+ ..|.||++|++.+. ..||+||+|+.||+|||++++++||+... ..++
T Consensus 2 irILivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~~dG~e~~~~ir~~~~---~~~~ 78 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFE---HQPN 78 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCS---SCCE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCC---CCCE
T ss_conf 5999996899999999999985899379999899999999998569999998389999979999999985599---9995
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 99991589988799999828985997999988999999999706
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 690 II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
|+++|++.+.....+++++|+++|+.||++.++|...+++++++
T Consensus 79 ii~~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~v~~k 122 (123)
T d1dz3a_ 79 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 122 (123)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99997769999999999879989997989999999999999855
No 38
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=99.81 E-value=4.5e-19 Score=149.13 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=105.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 23776068467899999998751995999699988999878999299983689999999999999875104899956999
Q 004636 613 LKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 613 ~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~II~ 692 (740)
.+||||||++.++..++..|+..|+ +.++.+|.+++.. .+.||+||+|+.||++||+++++++|+. .+.++||+
T Consensus 3 ~kILiVDDd~~~~~~l~~~L~~~g~-v~~~~~~~~al~~-~~~~dlillD~~mP~~~G~~~~~~lr~~----~~~~~ii~ 76 (120)
T d1p2fa2 3 WKIAVVDDDKNILKKVSEKLQQLGR-VKTFLTGEDFLND-EEAFHVVVLDVMLPDYSGYEICRMIKET----RPETWVIL 76 (120)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTEE-EEEESSHHHHHHC-CSCCSEEEEESBCSSSBHHHHHHHHHHH----CTTSEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCE-EEEECCHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHC----CCCCCEEE
T ss_conf 8899997999999999999996997-9998899999851-7899999996744002004789998613----89986899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 9158998879999982898599799998899999999970655
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHRV 735 (740)
Q Consensus 693 lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~ 735 (740)
+|+..+.+...+++++|++||+.||+++++|...+++++++++
T Consensus 77 it~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~r 119 (120)
T d1p2fa2 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (120)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 8067999999999987998999799999999999999998735
No 39
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.75 E-value=5.2e-18 Score=141.59 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=103.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 88872377606846789999999875199599969998899987899929998368999999999999987510489995
Q 004636 609 NFPGLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 609 ~~~~~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~ 688 (740)
.+.+++|||||||+.++..+...|+..||+|..+.++.+++. ..||+||+|++||+++|..+.+.. + ..+.+
T Consensus 8 ~l~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al~---~~~Dlvl~D~~mp~~~~~~~~~~~-~----~~p~~ 79 (189)
T d1qo0d_ 8 SLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFD---VPVDVVFTSIFQNRHHDEIAALLA-A----GTPRT 79 (189)
T ss_dssp TGGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCS---SCCSEEEEECCSSTHHHHHHHHHH-H----SCTTC
T ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEECCCHHHHCC---CCCCEEEECCCCCCCHHHHHHHHH-H----CCCCC
T ss_conf 603897999968999999999999986996230479889556---788989881889984999999999-7----29999
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 699991589988799999828985997999988999999999706
Q 004636 689 LIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 689 ~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
|||++|++.+.+...+|+++|+++||.||++.++|...++.++..
T Consensus 80 pvI~lta~~~~~~~~~al~~Ga~~yL~KP~~~~~L~~~i~~~~~~ 124 (189)
T d1qo0d_ 80 TLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 124 (189)
T ss_dssp EEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf 889995462088789999759829997343016888887640321
No 40
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.74 E-value=5.4e-17 Score=134.39 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=91.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 7237760684678999999987519--95999699988999878-99929998368999999999999987510489995
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLG--CDVMTVSSVEECFRVVS-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERP 688 (740)
Q Consensus 612 ~~~vLivdD~~~~r~~l~~~L~~~g--~~v~~a~~g~eal~~~~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~ 688 (740)
..+||||||++.+|..++.+|+..| +.|.++.||.+|++.+. ..||+||+|++||+|||++++++||+. .+.+
T Consensus 3 kirVLiVDD~~~~r~~l~~~L~~~g~~~~v~~a~~g~~al~~~~~~~pDlvllDi~MP~~dG~e~~~~ir~~----~~~~ 78 (140)
T d1a2oa1 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRL----RPMP 78 (140)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHS----SCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH----CCCC
T ss_conf 899999959899999999999968991899997999999999984598999975888999889999999985----8998
Q ss_pred EEEEEECCCC-HHHHHHHHHCCCCEEEECCCCH---------HHHHHHHHHHHC
Q ss_conf 6999915899-8879999982898599799998---------899999999970
Q 004636 689 LIVALTGSTD-NLTKDNCMRVGMDGVILKPVSL---------EKMRSVLSDLLE 732 (740)
Q Consensus 689 ~II~lta~~~-~~~~~~~l~~Ga~~~l~KP~~~---------~~L~~~i~~~l~ 732 (740)
.|++++.+.. .+...+++++|+++|+.||+.. +.+.+.++...+
T Consensus 79 ~i~i~~~~~~~~~~~~~al~~Ga~~yl~KP~~~~~~~~~~~~~~l~~~~r~~~~ 132 (140)
T d1a2oa1 79 VVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (140)
T ss_dssp EEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 089999427775999999986998999899997778999999999999999973
No 41
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=99.74 E-value=3.4e-17 Score=135.80 Aligned_cols=166 Identities=9% Similarity=0.071 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 99999999947653568999999999981499999999999999999999999999999997630898101621005899
Q 004636 342 RARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHA 421 (740)
Q Consensus 342 ~~k~~fla~isHELRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g~~~l~~~~~~L~~ 421 (740)
+.+.+|++.++||+||||+.|.|++++.. .++..++++.+.....+..... .... .
T Consensus 7 ~e~~~~l~~~~Hdl~npL~~I~g~l~L~~----~~~~~~~i~~i~~~~~~~~~~~----------~~~~---------~- 62 (179)
T d1ixma_ 7 NELIHLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESKLS----------NLKT---------P- 62 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHH----------TTTC---------H-
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHCCCCCC----------CCCC---------C-
T ss_conf 99999999852764689999999998044----2111157889998641010011----------3332---------2-
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCC-C--EEEEEEEEECCCCCCCCCCC
Q ss_conf 99999999753544059089998299999522626989999999999988405899-9--09999998325433368999
Q 004636 422 VFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE-G--NISITGFVAKSESLRDSRAP 498 (740)
Q Consensus 422 li~~~~~~~~~~~~~k~i~l~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~-g--~i~i~~~~~~~~~~~~~~~~ 498 (740)
... ............+.+........+. +.+++..+.|++.||+.||++++.. | ...|++.....
T Consensus 63 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~qvl~Nll~NAi~~~~~~~~~~~~I~i~~~~~--------- 130 (179)
T d1ixma_ 63 HLA--FDFLTFNWKTHYMTLEYEVLGEIKD-LSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHP--------- 130 (179)
T ss_dssp HHH--HHHHHGGGSCCSSEEEEEEESSCCC-CTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCS---------
T ss_pred CCC--CCCCCHHHHCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC---------
T ss_conf 111--2121013330243222333312100-3332336578999999999997540011100102111145---------
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCC----CCCCCCCCCHHH
Q ss_conf 876778789249899998519889948844551003346655----678888734058
Q 004636 499 EFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI----ALRNSSGSGLGL 552 (740)
Q Consensus 499 ~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~~~----~~~~~~GtGLGL 552 (740)
..++.|+|.|+|+|||++.++++|++||+.... .+.+..|.|+||
T Consensus 131 ---------~~~~~i~v~D~G~gi~~e~l~~if~~~y~~~~~~~~~~~~~~~~~~~~~ 179 (179)
T d1ixma_ 131 ---------DRQLILYLDFHGAFADPSAFDDIRQNGYEDVDIMRFEITSHECLIEIGL 179 (179)
T ss_dssp ---------SSSCEEEEEEESCBSCGGGCC-----------EEEEEECSSEEEEEEEC
T ss_pred ---------CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECC
T ss_conf ---------6579999985899959899999998546666424787544731676378
No 42
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=99.72 E-value=3.2e-17 Score=136.02 Aligned_cols=112 Identities=13% Similarity=0.248 Sum_probs=96.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-C-CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf 72377606846789999999875199599969998899987-8-999299983689999999999999875104899956
Q 004636 612 GLKVLVMDENGVSRSVTKGLLLHLGCDVMTVSSVEECFRVV-S-HEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHERPL 689 (740)
Q Consensus 612 ~~~vLivdD~~~~r~~l~~~L~~~g~~v~~a~~g~eal~~~-~-~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~~~~ 689 (740)
+.+|||||||+..+..+...|+..||.|..+.||.+|++.+ + ..||+||+|+.||++||++++++||+. .+..|
T Consensus 2 p~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dliilD~~lp~~~G~el~~~ir~~----~~~~p 77 (118)
T d2b4aa1 2 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQ----TKQPS 77 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTS----SSCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHC----CCCCC
T ss_conf 98799998989999999999996299729979899999999834999899995899999789999999962----99796
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 99991589988799999828985997999988999999999
Q 004636 690 IVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDL 730 (740)
Q Consensus 690 II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~ 730 (740)
||++|+..+.. .++...|+ ||+.|||++++|.++++..
T Consensus 78 ii~lt~~~~~~--~~~~~~~~-dyl~KP~~~~eL~~~i~~~ 115 (118)
T d2b4aa1 78 VLILTTGRHEL--IESSEHNL-SYLQKPFAISELRAAIDYH 115 (118)
T ss_dssp EEEEESCC--C--CCCSSSCE-EEEESSCCHHHHHHHHHHT
T ss_pred EEEEECCCCHH--HHHHHCCC-CEEECCCCHHHHHHHHHHH
T ss_conf 99998996399--99750599-7898989999999999987
No 43
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.69 E-value=6.3e-16 Score=126.84 Aligned_cols=158 Identities=21% Similarity=0.309 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC----EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHH
Q ss_conf 269899999999999884058999----0999999832543336899987677878924989999851988994884455
Q 004636 455 GDEKRLMQTLLNVVGNAVKFTKEG----NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530 (740)
Q Consensus 455 ~D~~~L~qvl~NLl~NAik~t~~g----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~i 530 (740)
+....|.|++.||++||++|+..+ .+.+.+...... ...+.|.|.|||+||++++++++
T Consensus 18 ~~~~~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~~-----------------~~~~~i~V~DnG~Gi~~~~~~~~ 80 (219)
T d2hkja3 18 NPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVPNA 80 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETT-----------------TTEEEEEEEECSCCCCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-----------------CCEEEEEEECCCCCCCHHHHHHH
T ss_conf 9378999999999999999887189852399999986389-----------------98999999858988887898741
Q ss_pred HHCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCE-EEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10033466556788-887340589999999981999-9999604994189999997078988899987645788866777
Q 004636 531 FTKFAQNQAIALRN-SSGSGLGLAICKRFVNLMEGH-IWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPVHGQT 608 (740)
Q Consensus 531 F~~F~~~~~~~~~~-~~GtGLGLaI~k~iv~~~gG~-I~v~S~~~g~G~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (740)
|++|++.+....+. .+|.|+||++|+.++++|+|. ++++|...+.++.+.+.++...... .+.. ..........
T Consensus 81 f~~~~~s~~~~~~~~~G~~GlGl~~~~~~s~~~~g~~i~V~S~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~tv~~~~ 156 (219)
T d2hkja3 81 FGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN--EPII--VERGSVENTR 156 (219)
T ss_dssp HHCCCSSCCCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTT--EEEE--EEEEEEECCT
T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCEEEE--EEEC--CCCCEEEEEC
T ss_conf 03217602346532667618899999999998399279999881489849999605520012--5513--7981899825
Q ss_pred CC--CCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 88--87237760684678999999987
Q 004636 609 NF--PGLKVLVMDENGVSRSVTKGLLL 633 (740)
Q Consensus 609 ~~--~~~~vLivdD~~~~r~~l~~~L~ 633 (740)
.+ ...++....++...+..+..+++
T Consensus 157 ~~~~~~vr~~~~~~~~~~~~~i~~~l~ 183 (219)
T d2hkja3 157 GFHGTSVAISIPGDWPKAKSRIYEYIK 183 (219)
T ss_dssp TCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 875563167750567899999999999
No 44
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=99.50 E-value=2.5e-13 Score=108.37 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=59.7
Q ss_pred EEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEE
Q ss_conf 998519889948844551003346655678888734058999999998199999996049941899999970
Q 004636 514 QVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585 (740)
Q Consensus 514 ~V~DtG~GI~~e~l~~iF~~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~l~~ 585 (740)
.+.|.+.|++++..+++|++|++.... .+..+|+||||+|||++|++|||+|+++|+ +|+||+|++++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~G~GLGLai~k~ive~hgG~I~v~S~-~g~GT~f~i~lPl 188 (189)
T d1i58a_ 119 DESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESE-KDKGTKVTIRLPL 188 (189)
T ss_dssp CHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CCCCEEEEEEEEC
T ss_conf 201455401556665440101000333-566776742899999999987998999953-9997799999957
No 45
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.30 E-value=2.6e-11 Score=94.10 Aligned_cols=95 Identities=24% Similarity=0.407 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHCC----CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 9899999999999884058----999099999983254333689998767787892498999985198899488445510
Q 004636 457 EKRLMQTLLNVVGNAVKFT----KEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (740)
Q Consensus 457 ~~~L~qvl~NLl~NAik~t----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~ 532 (740)
-..++.++.+++.||++|+ +.|.|.+......+ .+.|+|+|+|+||++ .+++|+
T Consensus 37 ~~di~~av~E~v~Nai~ha~~~~~~~~I~i~~~~~~~--------------------~l~i~i~D~G~gi~~--~~~~~~ 94 (139)
T d1th8a_ 37 LTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG--------------------VVHLTVRDEGVGIPD--IEEARQ 94 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------EEEEEEEECSSCCSC--HHHHTC
T ss_pred HHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEECC--------------------EEEEEECCCCCCCCC--CCCCCC
T ss_conf 8899999988644365412378999579999998068--------------------999998236666245--123356
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 03346655678888734058999999998199999996049941899999
Q 004636 533 KFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFI 582 (740)
Q Consensus 533 ~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G~~f~~~ 582 (740)
||++.+. ...++|+||+|+++++ |+++++|. .|+|++++++
T Consensus 95 ~~~~~~~----~~~~~GlGL~iv~~l~----d~i~i~s~-~~~Gt~v~i~ 135 (139)
T d1th8a_ 95 PLFTTKP----ELERSGMGFTIMENFM----DEVIVESE-VNKGTTVYLK 135 (139)
T ss_dssp CC-----------CCCSCHHHHHHHHS----SEEEEEEE-TTTEEEEEEE
T ss_pred CCCEECC----CCCCCHHHHHHHHHHC----CEEEEEEC-CCCCEEEEEE
T ss_conf 6521135----6897537899999849----88999974-9993899999
No 46
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.27 E-value=1.3e-11 Score=96.36 Aligned_cols=75 Identities=35% Similarity=0.523 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999994765356899999999998149---99999999999999999999999999999976308981
Q 004636 336 EAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET---ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSL 410 (740)
Q Consensus 336 ~~e~~~~~k~~fla~isHELRtPL~~I~g~~~lL~~~---~~~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr~~~g~~ 410 (740)
++++.++.|++|++++||||||||++|.|++++|.+. ...++++++++.|.+++.++..+|+++++++|+++|++
T Consensus 12 ~l~~~~~~k~~f~~~vsHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lLd~srle~g~l 89 (89)
T d2c2aa1 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSL 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999669999889999999999874001016899998777789999999999999999999874999
No 47
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.18 E-value=9.4e-11 Score=90.17 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=70.3
Q ss_pred EEECHHHHHHHHHHHHHHHHHHCC-----EEE--EEEECCCCCCCEECCHHHHHHHHHHHHHHHHHCCCC---------C
Q ss_conf 100589999999999753544059-----089--998299999522626989999999999988405899---------9
Q 004636 415 GTFNLHAVFREVLNLIKPIASVKK-----LLV--ALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE---------G 478 (740)
Q Consensus 415 ~~~~L~~li~~~~~~~~~~~~~k~-----i~l--~~~~~~~~p~~~~~D~~~L~qvl~NLl~NAik~t~~---------g 478 (740)
..+++.++++++++..+..+..+. ... .....++.+..+.+|+.+|.|++.||++||++|+.. +
T Consensus 13 ~~~~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~ 92 (125)
T d1y8oa2 13 PTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYP 92 (125)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 97999999999999999887665565676522210220799885786278999999999999999863423223577751
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHH
Q ss_conf 09999998325433368999876778789249899998519889948844551
Q 004636 479 NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLF 531 (740)
Q Consensus 479 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF 531 (740)
.|.++.... ..++.|+|+|||+|||++.+++||
T Consensus 93 ~I~i~~~~~--------------------~~~v~i~V~D~G~GI~~e~~~~IF 125 (125)
T d1y8oa2 93 AVKTLVTLG--------------------KEDLSIKISDLGGGVPLRKIDRLF 125 (125)
T ss_dssp CEEEEEEEC--------------------SSEEEEEEEECSCCCCHHHHGGGG
T ss_pred EEEEEEECC--------------------CCEEEEEEEEECCCCCHHHHCCCC
T ss_conf 688885148--------------------988999999928882989980349
No 48
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.87 E-value=1.1e-07 Score=68.38 Aligned_cols=164 Identities=10% Similarity=0.118 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCEECCCCHHHHHHHHCCC
Q ss_conf 57899988886325665689999998420113656059980179985589987514678996211488625899761378
Q 004636 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNH 222 (740)
Q Consensus 143 ~~~l~~lt~~ir~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (740)
.+.+..+.+++. .+|...+++..+..+.+.+++++|.+|+.+++...+...............+|.+.+.+.+++.+++
T Consensus 5 ~~~ll~l~~~l~-~ld~~~l~~~il~~~~~~~~ad~~~i~L~d~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~ 83 (187)
T d1mc0a1 5 DRKILQLCGELF-DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQ 83 (187)
T ss_dssp HHHHHHHHHTCC-CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 999999999999-5899999999999999996998899999989976699987415776543363288547999997411
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCEEEEEECEECCCCCCCCCCCCCCCCCEEEEEEEE-ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 1683689742223555465579942799821000135666895211123406899994-169866521418999999999
Q 004636 223 AVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLML-PSDSARQWHVHELELVEVVAD 301 (740)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~p~l~~~~~~~~~~p~~~~~~~~~~vl~l-~~~~~r~~~~~e~~ll~~~a~ 301 (740)
+..+.+.....++.... .........+++|++.. .++..+|++.+ .....+.|+.++++++..++.
T Consensus 84 ~~~i~d~~~d~~~~~~~-~~~~~~~s~l~vPl~~~------------~~~~~iGvl~~~~~~~~~~fs~~d~~~l~~~a~ 150 (187)
T d1mc0a1 84 CIQLKDLTSDDVQQLQN-MLGCELQAMLCVPVISR------------ATDQVVALACAFNKLGGDFFTDEDEHVIQHCFH 150 (187)
T ss_dssp CEEGGGSCHHHHHHHHH-HHCSCCCCEEEEEEECT------------TTCSEEEEEEEEEESSCSSCCSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCH-HHHHHHHHHHHHHHHCC------------CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 34343001112333431-20123788886543211------------131006899987255420213579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q 004636 302 QVAVALSHAAILEESMRAR 320 (740)
Q Consensus 302 q~a~al~~a~l~~e~~~~~ 320 (740)
++++|+++++++++..+.+
T Consensus 151 ~~a~ai~na~l~~~~~~~~ 169 (187)
T d1mc0a1 151 YTGTVLTSTLAFQKEQKLK 169 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 49
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]}
Probab=98.62 E-value=2e-08 Score=73.61 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999476535689999999999814999999999999999999999999999999976
Q 004636 341 IRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSR 404 (740)
Q Consensus 341 ~~~k~~fla~isHELRtPL~~I~g~~~lL~~~~~~~~~~~~l~~i~~~~~~l~~lI~~lLd~sr 404 (740)
.+.+.+|++++||||||||++|.|+++++.+ +..++++.|.++..+|..+|+++|+++|
T Consensus 9 ~~~~~~f~~~vsHeLRTPLt~i~~~~e~l~~-----~~~~~~~~i~~~~~rm~~li~dlL~~aR 67 (67)
T d1joya_ 9 ADDRTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDYLR 67 (67)
T ss_dssp SSSHHHHHTTTHHHHHHHHHHHHHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998448888999999999887233-----3699999999999999999999998659
No 50
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.53 E-value=3.5e-06 Score=57.73 Aligned_cols=147 Identities=9% Similarity=0.111 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEC-CCCCCCCEECCCCHHHHHHHHCCCCEEECCCCCCCCCC
Q ss_conf 65689999998420113656059980179985589987514-67899621148862589976137816836897422235
Q 004636 158 DRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR-QQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLR 236 (740)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (740)
|.++++.+.+.++.+.+++++|.+|+.+.+........... ........+|.......++..++++....+........
T Consensus 1 Dld~ll~~i~~~~~~~~~ad~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1mc0a2 1 DVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFY 80 (154)
T ss_dssp CHHHHHHHHHHHHHHHHTEEEEEEEEECSSSEEEEEETTEECCCSTTCCEECTTSHHHHHHHHHCCCEEESCSTTCTTCC
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCCEEECCCCCCHHHEECCCCEEEEEECCCCCCCC
T ss_conf 98999999999999998999899999989932899987224533123145147766211100368689997410013332
Q ss_pred CCCC-CCCCCCEEEEEECEECCCCCCCCCCCCCCCCCEEEEEE-EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5546-55799427998210001356668952111234068999-941698665214189999999999999999999999
Q 004636 237 PLAG-KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVL-MLPSDSARQWHVHELELVEVVADQVAVALSHAAILE 314 (740)
Q Consensus 237 ~~~~-~~~~g~~~~i~~p~l~~~~~~~~~~p~~~~~~~~~~vl-~l~~~~~r~~~~~e~~ll~~~a~q~a~al~~a~l~~ 314 (740)
.... ............|+ .......++++ +......+.|+++++++++.+|.|+++|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~~~~f~~~d~~ll~~la~q~aiAi~na~l~~ 147 (154)
T d1mc0a2 81 RGVDDSTGFRTRNILCFPI-------------KNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYK 147 (154)
T ss_dssp CTTHHHHTCCCCCEEEEEE-------------ECTTSCEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCEEEEEEEC-------------CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0244441014136788721-------------234652467888613454456668899999999999999999999999
Q ss_pred HHH
Q ss_conf 999
Q 004636 315 ESM 317 (740)
Q Consensus 315 e~~ 317 (740)
+..
T Consensus 148 ~l~ 150 (154)
T d1mc0a2 148 KVN 150 (154)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 51
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
Probab=98.33 E-value=1e-05 Score=54.46 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEECC---CCCCCCEECCC--CHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 56899999984201136560599801799855899875146---78996211488--62589976137816836897422
Q 004636 159 RHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ---QNPVGYTVPIQ--LPVINQVFSSNHAVKISPNCPVA 233 (740)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 233 (740)
.++|+.+++.++++.|++++|.++..+.++....+...... .+..+...|.. .......+..++...+.+.....
T Consensus 1 L~~il~~av~el~~~l~~dRv~iy~f~~d~~~~vvae~~~~~~~~s~lg~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~ 80 (170)
T d2k2na1 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (170)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 97899999999999968985999998489997999998779999530187544210479999999729859874135687
Q ss_pred CCCC------------CCCCCCC-------------CCEEEEEECEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 2355------------5465579-------------94279982100013566689521112340689999416986652
Q 004636 234 RLRP------------LAGKYMP-------------GEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQW 288 (740)
Q Consensus 234 ~~~~------------~~~~~~~-------------g~~~~i~~p~l~~~~~~~~~~p~~~~~~~~~~vl~l~~~~~r~~ 288 (740)
.... ....+.. +-...+.+|+ .. .+...|+++.....+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~s~l~vPi-------------~~-~~~lwGlL~~h~~~~r~W 146 (170)
T d2k2na1 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPL-------------MH-HQELWGLLVSHHAEPRPY 146 (170)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCC-------------SC-SSCCCEEEEEEECSCCCC
T ss_pred EEECCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCEEEEEE-------------EC-CCCEEEEEEEECCCCCCC
T ss_conf 1211643235577654540333367689999997021224289865-------------40-783478888723889869
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 141899999999999999999999
Q 004636 289 HVHELELVEVVADQVAVALSHAAI 312 (740)
Q Consensus 289 ~~~e~~ll~~~a~q~a~al~~a~l 312 (740)
++.|+++++.+|+|+++||+++.+
T Consensus 147 ~~~Ei~ll~~iA~qlaiAI~qa~L 170 (170)
T d2k2na1 147 SQEELQVVQLLADQVSIAIAQAEL 170 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999997229
No 52
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=98.13 E-value=0.0003 Score=44.03 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEECC--CCCCCCEECC--CCHHH
Q ss_conf 8886578999888863256656899999984201136560599801799855899875146--7899621148--86258
Q 004636 139 QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQ--QNPVGYTVPI--QLPVI 214 (740)
Q Consensus 139 ~e~~~~~l~~lt~~ir~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 214 (740)
..+-.+.++.++++||+++|.++|+.|++.++.+.+++++|.++--+.++..-........ .+..+...+. ..+..
T Consensus 3 ~~~~~r~l~~i~~~Ir~sldl~~Il~tav~eir~~L~~DRv~Iy~f~~~~~~~vvaEs~~~~~~s~lg~~~~~~~~~~~~ 82 (194)
T d2oola1 3 TNEFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQS 82 (194)
T ss_dssp HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 77999999999999986099999999999999999789979999973889858999635788876668763717778999
Q ss_pred HHHHHCCCCEEECCCCCCCC-CC-----------CCCCCCCC-------------CCEEEEEECEECCCCCCCCCCCCCC
Q ss_conf 99761378168368974222-35-----------55465579-------------9427998210001356668952111
Q 004636 215 NQVFSSNHAVKISPNCPVAR-LR-----------PLAGKYMP-------------GEVVAVRVPLLHLSNFQINDWPELS 269 (740)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~-------------g~~~~i~~p~l~~~~~~~~~~p~~~ 269 (740)
......+....+.+...... .. .....+.. +-...+.+|+.
T Consensus 83 ~~~~~~~~~~~i~dv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vkA~L~vPI~-------------- 148 (194)
T d2oola1 83 RALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIV-------------- 148 (194)
T ss_dssp HHHHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEE--------------
T ss_pred HHHHHCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCEEEEEEHH--------------
T ss_conf 999865956996223678614550455233787535542223689899999995787427986332--------------
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 234068999941698665214189999999999999999
Q 004636 270 TKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALS 308 (740)
Q Consensus 270 ~~~~~~~vl~l~~~~~r~~~~~e~~ll~~~a~q~a~al~ 308 (740)
..+...|+++.....+|.|..++....+.++.+++..+.
T Consensus 149 ~~~~LWGlL~~hq~~pr~~~~~~~~~~e~l~q~~a~ql~ 187 (194)
T d2oola1 149 RDNRLWGMISCHNLTPRFVSYEVRQACELIAQVLTWQIG 187 (194)
T ss_dssp ETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 389117999998488987998899999999999999999
No 53
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]}
Probab=98.11 E-value=0.0003 Score=44.02 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=99.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCEEEEEEEECCCCCCCCEECCCCHHHHHHHHCCCCEEEC
Q ss_conf 888863256656899999984201136-5605998017998558998751467899621148862589976137816836
Q 004636 149 LTHEIRSTLDRHTILKTTLVELGRTLA-LEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKIS 227 (740)
Q Consensus 149 lt~~ir~sld~~~il~~~~~~l~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (740)
+..-+....|....+......+.+.+. ...|++++.+.+...+..... ......+|...+.+.+++.++++..+.
T Consensus 13 i~~ll~~e~dl~~~L~~i~~~l~~~~~~~~~~~~yl~d~~~~~l~~~~~----~~~~~~i~~g~g~~g~v~~~~~~~~v~ 88 (159)
T d1vhma_ 13 FNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG----KIACVRIPVGRGVCGTAVARNQVQRIE 88 (159)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETTEEEEEEEEE----SCCCSEEETTSHHHHHHHHHTSCEEES
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEECC----CCCEEEEECCCCHHHHHHHCCCCEEEC
T ss_conf 9999828941999999999999876045846799999788766641237----764058726987488999709957966
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89742223555465579942799821000135666895211123406899994169866521418999999999999999
Q 004636 228 PNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVAL 307 (740)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~i~~p~l~~~~~~~~~~p~~~~~~~~~~vl~l~~~~~r~~~~~e~~ll~~~a~q~a~al 307 (740)
+.....++... ..+....+.+|+. .++..+|++.+.+..++.|+++++++++.+|.|+++||
T Consensus 89 d~~~d~~~~~~----~~~~~S~l~vPl~--------------~~~~viGvl~v~s~~~~~F~~~d~~ll~~la~qia~ai 150 (159)
T d1vhma_ 89 DVHVFDGHIAC----DAASNSEIVLPLV--------------VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 150 (159)
T ss_dssp CTTTCTTCCCS----CCCCSEEEEEEEE--------------ETTEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHC----CCCCCEEEEECEE--------------ECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 76775666531----2022412895779--------------89878999995279989879999999999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q 004636 308 SHAA 311 (740)
Q Consensus 308 ~~a~ 311 (740)
+++.
T Consensus 151 ~~~~ 154 (159)
T d1vhma_ 151 ATTD 154 (159)
T ss_dssp HTSS
T ss_pred HCCC
T ss_conf 7453
No 54
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=98.06 E-value=0.00032 Score=43.84 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEE--CCCCCCCCEECCC--CHHHHHHHHCC
Q ss_conf 9998888632566568999999842011365605998017998558998751--4678996211488--62589976137
Q 004636 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTL--RQQNPVGYTVPIQ--LPVINQVFSSN 221 (740)
Q Consensus 146 l~~lt~~ir~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~ 221 (740)
...++.+||+++|.++|+.|++.|+.+.+++++|.+|--+.++..-...... +..+..+...|.. .......+..+
T Consensus 10 ~~ri~~~Ir~sldl~~Il~ttv~evr~lL~~DRV~IYqf~~d~~g~vvaEs~~~~~~s~lg~~~~~~~~~~~~~~~~~~~ 89 (192)
T d3c2wa1 10 AQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQN 89 (192)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999850889999999999999986898699999888999589997217999986778556053789999999839
Q ss_pred CCEEECC
Q ss_conf 8168368
Q 004636 222 HAVKISP 228 (740)
Q Consensus 222 ~~~~~~~ 228 (740)
....+.+
T Consensus 90 ~~~~i~d 96 (192)
T d3c2wa1 90 PIRLIAD 96 (192)
T ss_dssp SEEEESC
T ss_pred CEEEEEC
T ss_conf 8489864
No 55
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=98.05 E-value=0.00043 Score=42.96 Aligned_cols=153 Identities=8% Similarity=0.072 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEC--CCCCCCCEECCC--CHHHHHHHH
Q ss_conf 7899988886325665689999998420113656059980179985589987514--678996211488--625899761
Q 004636 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR--QQNPVGYTVPIQ--LPVINQVFS 219 (740)
Q Consensus 144 ~~l~~lt~~ir~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~ 219 (740)
..++.++.+||+++|.++|+.+++.++.+.+++++|.+|--+.++..-....... ..+..+...|.. .......+.
T Consensus 4 ~~l~~~~~~ir~s~dl~~Il~tav~evr~~L~~DRV~IYrf~~d~~g~vvaEs~~~~~~S~lg~~~p~~~~~~~~~~~~~ 83 (187)
T d2o9ca1 4 HALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYT 83 (187)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999999998678999999999999999868997699998899998999998789998878881370777899999997
Q ss_pred CCCCEEECCCCCC-CCCCC-----------CCCCC-------------CCCCEEEEEECEECCCCCCCCCCCCCCCCCEE
Q ss_conf 3781683689742-22355-----------54655-------------79942799821000135666895211123406
Q 004636 220 SNHAVKISPNCPV-ARLRP-----------LAGKY-------------MPGEVVAVRVPLLHLSNFQINDWPELSTKRYA 274 (740)
Q Consensus 220 ~~~~~~~~~~~~~-~~~~~-----------~~~~~-------------~~g~~~~i~~p~l~~~~~~~~~~p~~~~~~~~ 274 (740)
.+....+.+.... ..... ....+ ..+-...+.+|++. .+..
T Consensus 84 ~~~~~~i~dv~~~~~~l~~~~~~~~~~~~dl~~~~l~~~s~~~~~~L~~~~vkA~L~vPI~~--------------~~~L 149 (187)
T d2o9ca1 84 RHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVV--------------GGQL 149 (187)
T ss_dssp HSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEE--------------TTEE
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCCCEEEEEEEEE--------------CCEE
T ss_conf 59808985044676662012132347876666340026539999999966977599999988--------------9964
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899994169866521418999999999999999999
Q 004636 275 LMVLMLPSDSARQWHVHELELVEVVADQVAVALSHA 310 (740)
Q Consensus 275 ~~vl~l~~~~~r~~~~~e~~ll~~~a~q~a~al~~a 310 (740)
.|+++.....+|.|..+...+.+.++.+++++++.+
T Consensus 150 WGLL~~H~~~pr~~~~~~r~~~e~l~~~ls~~l~~~ 185 (187)
T d2o9ca1 150 WGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVK 185 (187)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999879888899899999999999999999743
No 56
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=97.94 E-value=0.00055 Score=42.22 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEC--CCCCCCCEECC--CCHHHHHHHH
Q ss_conf 7899988886325665689999998420113656059980179985589987514--67899621148--8625899761
Q 004636 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLR--QQNPVGYTVPI--QLPVINQVFS 219 (740)
Q Consensus 144 ~~l~~lt~~ir~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~ 219 (740)
..++.++++||+|+|.++|+.|++.++++.+++++|.++-.+.++..-....... .....+...+. ........+.
T Consensus 8 ~L~~~ii~~Ir~Sldl~~Il~tav~eir~lL~~DRV~iy~f~~d~~g~vvaEs~~~~~~s~lg~~~~~~~~~~~~~~~~~ 87 (196)
T d2veaa1 8 HMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFI 87 (196)
T ss_dssp HHHHHHHHCC----CHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999998639999999999999999978996999998898982057776237888755661016778888999997
Q ss_pred CCCCEEECC
Q ss_conf 378168368
Q 004636 220 SNHAVKISP 228 (740)
Q Consensus 220 ~~~~~~~~~ 228 (740)
.+....+.+
T Consensus 88 ~~~~~~i~d 96 (196)
T d2veaa1 88 HNPIRVIPD 96 (196)
T ss_dssp HCSEEEESC
T ss_pred CCCCEEECC
T ss_conf 498479826
No 57
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.20 E-value=0.0027 Score=37.34 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCC
Q ss_conf 99999999999884058999099999983254333689998767787892498999985198899488445510033466
Q 004636 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (740)
Q Consensus 459 ~L~qvl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~ 538 (740)
.+.+++..|+.||+++. ...|.|.+ .... .-.|.|+|||.||++++++.+|.++.+.+
T Consensus 6 ~~~~~v~ELi~NsiDA~-At~I~i~i--~~~g-------------------~~~i~V~DnG~Gi~~~dl~~~~~~~~tsk 63 (203)
T d1h7sa2 6 SLSTAVKELVENSLDAG-ATNIDLKL--KDYG-------------------VDLIEVSDNGCGVEEENFEGLTLKHHTSK 63 (203)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEE--EGGG-------------------TSEEEEEECSCCCCGGGSGGGGC------
T ss_pred CHHHHHHHHHHHHHCCC-CCEEEEEE--ECCC-------------------EEEEEEEECCCCCCHHHHHHHHHHEEECC
T ss_conf 57999999997787489-98899999--8698-------------------88999952871138788532333132022
Q ss_pred CCCC---CC---CCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 5567---88---8873405899999999819999999604994
Q 004636 539 AIAL---RN---SSGSGLGLAICKRFVNLMEGHIWIESEGLGK 575 (740)
Q Consensus 539 ~~~~---~~---~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~ 575 (740)
.... .. .+.-|.+|+- +. .-+++.+.|...+.
T Consensus 64 ~~~~~~~~~~~t~GfrGeaL~s---i~--~~s~~~i~s~~~~~ 101 (203)
T d1h7sa2 64 IQEFADLTQVETFGFRGEALSS---LC--ALSDVTISTCHASA 101 (203)
T ss_dssp ----CCTTCSEEESSSSSHHHH---HH--HHSEEEEEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCHHHHH---HH--HCCCEEEEEECCCC
T ss_conf 3454443332102766055666---54--05614787333898
No 58
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=96.66 E-value=0.0029 Score=37.12 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCC
Q ss_conf 99999999999884058999099999983254333689998767787892498999985198899488445510033466
Q 004636 459 RLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQ 538 (740)
Q Consensus 459 ~L~qvl~NLl~NAik~t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~~F~~~~ 538 (740)
.+.+++-.|+.||+++... .|.|.. .... .-.|+|.|||.||++++++.++.++.+.+
T Consensus 24 ~~~~~vkELveNsiDA~At-~I~V~i--~~~g-------------------~~~i~V~DnG~Gi~~~d~~~~~~r~~TSK 81 (218)
T d1b63a2 24 RPASVVKELVENSLDAGAT-RIDIDI--ERGG-------------------AKLIRIRDNGCGIKKDELALALARHATSK 81 (218)
T ss_dssp SHHHHHHHHHHHHHHTTCS-EEEEEE--EGGG-------------------TSEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHCCCCC-EEEEEE--ECCC-------------------CCEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 5889999998643527998-899999--8598-------------------10899950777758888876675451556
Q ss_pred CCC------CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 556------788887340589999999981999999960499
Q 004636 539 AIA------LRNSSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (740)
Q Consensus 539 ~~~------~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g 574 (740)
-.. -...+--|-+|+-.. .-+++.+.|...+
T Consensus 82 i~~~~dl~~~~t~GFRGEAL~Si~-----~vs~l~I~s~~~~ 118 (218)
T d1b63a2 82 IASLDDLEAIISLGFRGEALASIS-----SVSRLTLTSRTAE 118 (218)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHHH-----TTSEEEEEEECTT
T ss_pred CCCHHHCCHHHHHCCCHHHHHHHH-----HCCCEEEEEECCC
T ss_conf 632000010132166623988766-----3083677640379
No 59
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.15 E-value=0.033 Score=29.58 Aligned_cols=133 Identities=10% Similarity=0.032 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHCCC-----CCCEEEEEECCCCCC-EEEEEEEECCCCCCCCEECCCCHHHHHHHHCCCCEEECCC
Q ss_conf 5665689999998420113-----656059980179985-5899875146789962114886258997613781683689
Q 004636 156 TLDRHTILKTTLVELGRTL-----ALEECALWMPTRTGL-ELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPN 229 (740)
Q Consensus 156 sld~~~il~~~~~~l~~~l-----~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (740)
..|....+......+...+ ..+.|.+++.+.+.. .+...... .......+|...+.+.+++.++++..+.+.
T Consensus 36 ~~~l~~~L~~i~~ll~~~~~~~~~~~d~~g~yl~~~~~~~~l~~~~~~--g~~~~~~i~~g~Gi~G~v~~~g~~i~v~D~ 113 (176)
T d1f5ma_ 36 QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQ--GKVACQMIQFGKGVCGTAASTKETQIVPDV 113 (176)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEE--ESCCCSEEETTSHHHHHHHHHTSCEEESCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECC--CCCCCEEECCCCCHHHHHHHHCCEEEECCC
T ss_conf 631899999999999999874420047148999855888569876317--875532651897579999976984996374
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 742223555465579942799821000135666895211123406899994169866521418999999999999999
Q 004636 230 CPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVAL 307 (740)
Q Consensus 230 ~~~~~~~~~~~~~~~g~~~~i~~p~l~~~~~~~~~~p~~~~~~~~~~vl~l~~~~~r~~~~~e~~ll~~~a~q~a~al 307 (740)
....++.. +.++....+++|+. ...+..+|++.+.+..++.|++++.++++.+|.+++.|.
T Consensus 114 ~~dpr~~~----~~~~~~S~l~vPl~-------------~~~g~~~GVl~v~s~~~~~F~~~d~~~l~~~A~~ia~a~ 174 (176)
T d1f5ma_ 114 NKYPGHIA----CDGETKSEIVVPII-------------SNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKSC 174 (176)
T ss_dssp GGSTTCCC----SSTTCCEEEEEEEE-------------CTTSCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHH----CCCCCCCEEEECCC-------------CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 44862021----02346650784110-------------368968999996069999769999999999999999873
No 60
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.16 E-value=0.074 Score=27.10 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHC----CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHH----
Q ss_conf 89999999999988405----8999099999983254333689998767787892498999985198899488445----
Q 004636 458 KRLMQTLLNVVGNAVKF----TKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPN---- 529 (740)
Q Consensus 458 ~~L~qvl~NLl~NAik~----t~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~---- 529 (740)
.-|..++..+|.||++. .....|.+.+ .... -.|+|.|+|.|||-+..+.
T Consensus 52 ~gl~ki~dEil~Na~D~~~r~~~~~~I~v~i--~~~~--------------------~si~V~d~GrGIPv~~h~~~~~~ 109 (239)
T d1pvga2 52 PGLFKIFDEILVNAADNKVRDPSMKRIDVNI--HAEE--------------------HTIEVKNDGKGIPIEIHNKENIY 109 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE--ETTT--------------------TEEEEEEESSCCCCSBCTTTCSB
T ss_pred CCCEEECCEEEECCCCHHHHCCCCCEEEEEE--ECCC--------------------CEEEEEECCCCEEEEECCCCCCC
T ss_conf 0200004411232021123124565699998--1799--------------------98999856754144002455311
Q ss_pred ----HHHCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHC
Q ss_conf ----5100334665567----88887340589999999981
Q 004636 530 ----LFTKFAQNQAIAL----RNSSGSGLGLAICKRFVNLM 562 (740)
Q Consensus 530 ----iF~~F~~~~~~~~----~~~~GtGLGLaI~k~iv~~~ 562 (740)
+|..+.....-.. ...+..|+|.+.+.-+.+.+
T Consensus 110 ~~e~ift~l~ag~nfd~~~~k~sgGlnGvG~~vvNalS~~f 150 (239)
T d1pvga2 110 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEF 150 (239)
T ss_dssp HHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEE
T ss_pred HHHEEEEEECCCCCCCCCCCEEECCEECCCEEEHHHHHHHH
T ss_conf 00300476213543345542220770230101000224763
No 61
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=94.14 E-value=0.099 Score=26.21 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC-------
Q ss_conf 989999999999988405899---9099999983254333689998767787892498999985198899488-------
Q 004636 457 EKRLMQTLLNVVGNAVKFTKE---GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQD------- 526 (740)
Q Consensus 457 ~~~L~qvl~NLl~NAik~t~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~------- 526 (740)
..-+.+++..+|.||+...-. ..+.+.. ..+. .|+|.|+|.|||-+.
T Consensus 32 ~~gl~~l~~Eil~Na~De~~~~~~~~i~v~i--~~dg---------------------sIsV~ddGrGIPv~~h~~~~~~ 88 (219)
T d1ei1a2 32 GTGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN---------------------SVSVQDDGRGIPTGIHPEEGVS 88 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTTSSB
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE--CCCC---------------------EEEEEECCCCCCCCCCCCCCCC
T ss_conf 6520343676764355664079766204789--2898---------------------1999978755223316766986
Q ss_pred -HHHHHHCCCCCCCC---C-CCCCCCCCHHHHHHHHHHHHC
Q ss_conf -44551003346655---6-788887340589999999981
Q 004636 527 -IPNLFTKFAQNQAI---A-LRNSSGSGLGLAICKRFVNLM 562 (740)
Q Consensus 527 -l~~iF~~F~~~~~~---~-~~~~~GtGLGLaI~k~iv~~~ 562 (740)
.+-+|........- . .-..+..|+|++++.-+-+.+
T Consensus 89 ~~e~if~~l~tg~~fd~~~~~~sgG~nGvG~~~~NalS~~f 129 (219)
T d1ei1a2 89 AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKL 129 (219)
T ss_dssp HHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEEEEE
T ss_conf 56436342430158888763247675664624778761389
No 62
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=92.16 E-value=0.25 Score=23.34 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC---CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHH----
Q ss_conf 6989999999999988405899---909999998325433368999876778789249899998519889948844----
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKE---GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIP---- 528 (740)
Q Consensus 456 D~~~L~qvl~NLl~NAik~t~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~---- 528 (740)
+..-|.+++..+|+||++-.-. ..+.+.. ..+ =.|+|.|+|.|||-+..+
T Consensus 23 ~~~Gl~~l~~Eil~Na~De~~~~~~~~i~v~~--~~d---------------------g~i~V~ddG~GIpv~~h~~~~~ 79 (212)
T d1kija2 23 GVEGYHHLFKEILDNAVDEALAGYATEILVRL--NED---------------------GSLTVEDNGRGIPVDLMPEEGK 79 (212)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE--CTT---------------------SCEEEEECSSCCCCSEETTTTE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE--CCC---------------------CCEEEEECCCCCCCCCCCCCCC
T ss_conf 98515655464443341000203786488899--089---------------------8099998884312011134696
Q ss_pred ----HHHHCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf ----55100334665----56788887340589999999981
Q 004636 529 ----NLFTKFAQNQA----IALRNSSGSGLGLAICKRFVNLM 562 (740)
Q Consensus 529 ----~iF~~F~~~~~----~~~~~~~GtGLGLaI~k~iv~~~ 562 (740)
-+|.-...... ......+..|+|.+.+.-+-+.+
T Consensus 80 ~~~e~if~~l~~~~~~d~~~~~~sgG~hGvGa~vvNalS~~~ 121 (212)
T d1kija2 80 PAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 121 (212)
T ss_dssp EHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred CEEEEEEEEECCCCCCCCCCCEECCCCCCCCCEEEEEECCCE
T ss_conf 047999988703456667773323777653434789963612
No 63
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=91.74 E-value=0.2 Score=24.12 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC---CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 6989999999999988405899---9099999983254333689998767787892498999985198899488445510
Q 004636 456 DEKRLMQTLLNVVGNAVKFTKE---GNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFT 532 (740)
Q Consensus 456 D~~~L~qvl~NLl~NAik~t~~---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~DtG~GI~~e~l~~iF~ 532 (740)
|...|.+++..+++||++=.-. ..|.+.. ..+. .++|+|+|.|||-+.-
T Consensus 2 d~~glhHlv~EivDNsiDEa~aG~~~~I~V~l--~~D~---------------------si~V~D~GRGIPvd~h----- 53 (168)
T d1s14a_ 2 DTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL--HADQ---------------------SLEVIDDGRGMPVDIH----- 53 (168)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHTTSCSEEEEEE--CTTS---------------------CEEEEECSSCCCCSBC-----
T ss_pred CCCCCCEEEEEEEECHHHHHHCCCCCEEEEEE--ECCC---------------------EEEEEEEECCCCEEEE-----
T ss_conf 98887518865520689899718997899999--6898---------------------4999998456535661-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 033466556788887340589999999981999999960
Q 004636 533 KFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE 571 (740)
Q Consensus 533 ~F~~~~~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~ 571 (740)
.+.+.+++.+.++...|.++-=.+.+++.
T Consensus 54 ----------~~~~~~~~e~v~t~SVVNALS~~l~v~v~ 82 (168)
T d1s14a_ 54 ----------PEEGVPAVELILCISVVNALSKRVEVNVR 82 (168)
T ss_dssp ----------TTTCSBHHHHHHHTSHHHHHEEEEEEEEE
T ss_pred ----------CCCCCCHHHCCCCEEEEEECCCEEEEEEE
T ss_conf ----------34797245425750592626675999999
No 64
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=85.28 E-value=0.53 Score=21.04 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=35.5
Q ss_pred EEEEEECCCCCCCCCHHHHHHCCCCCCCC---------CCCC-CCCCCHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 99998519889948844551003346655---------6788-887340589999999981999999960499
Q 004636 512 RVQVKDSGSGISPQDIPNLFTKFAQNQAI---------ALRN-SSGSGLGLAICKRFVNLMEGHIWIESEGLG 574 (740)
Q Consensus 512 ~i~V~DtG~GI~~e~l~~iF~~F~~~~~~---------~~~~-~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g 574 (740)
.+.|.|||+||..+++.+-+....+.... ..++ .+--|+|++-|--+.+ ++.+.|...+
T Consensus 73 ~l~i~DnGiGMt~~~~~~~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fmvad----~v~V~trs~~ 141 (213)
T d2iwxa1 73 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVAD----RVQVISKSND 141 (213)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGGTEE----EEEEEEECTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC----CEEEEEECCC
T ss_conf 25884278303588998887644000106777541000013341114601100102236----1369860588
No 65
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=84.89 E-value=0.53 Score=21.06 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=33.5
Q ss_pred EEEEEECCCCCCCCCHHHHHHCCCCCCCCC--------C----C---CCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999985198899488445510033466556--------7----8---8887340589999999981999999960
Q 004636 512 RVQVKDSGSGISPQDIPNLFTKFAQNQAIA--------L----R---NSSGSGLGLAICKRFVNLMEGHIWIESE 571 (740)
Q Consensus 512 ~i~V~DtG~GI~~e~l~~iF~~F~~~~~~~--------~----~---~~~GtGLGLaI~k~iv~~~gG~I~v~S~ 571 (740)
.+.|+|||+||..+++.+-+-..-+..... . . -.+.-|+|++-|.-+.+ ++.+.|.
T Consensus 71 ~l~i~DnGiGMt~~e~~~~lgtIa~Sgt~~f~~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad----~V~v~s~ 141 (227)
T d2gqpa1 71 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVAD----KVIVTSK 141 (227)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEE----EEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEEEE----EEEEEEE
T ss_conf 8999845755538999998887761261888875220124434302233322754168886420----5899973
No 66
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=84.33 E-value=0.81 Score=19.72 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=78.8
Q ss_pred EEEE----ECCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 3776----068467899999998751995999---69998899987-899929998368999999999999987510489
Q 004636 614 KVLV----MDENGVSRSVTKGLLLHLGCDVMT---VSSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRH 685 (740)
Q Consensus 614 ~vLi----vdD~~~~r~~l~~~L~~~g~~v~~---a~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~ 685 (740)
+|++ -|-+..-..++..+|+..||+|.- ....++.++.+ +..+|+|.+...|... ...++++.+..+...
T Consensus 5 kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~d~v~lS~~~~~~--~~~~~~~~~~l~~~~ 82 (137)
T d1ccwa_ 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQG--EIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTH--HHHHTTHHHHHHHTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCC--HHHHHHHHHHHHHHC
T ss_conf 799995498835889999999999789767722345699999999984398778875114411--477999999998731
Q ss_pred -CCCEEEEEECCC------CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf -995699991589------988799999828985997999988999999999706
Q 004636 686 -ERPLIVALTGST------DNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 686 -~~~~II~lta~~------~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
..++|+ +.+.. .+....+..+.|++.+.....++++..+-+++-|+-
T Consensus 83 ~~~i~ii-vGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~t~~~~~~~~l~~~l~~ 136 (137)
T d1ccwa_ 83 LEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDLNI 136 (137)
T ss_dssp CTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCEEE-EECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 4898799-94786777646187899999769788989999999999999998576
No 67
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.33 E-value=0.52 Score=21.12 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=35.1
Q ss_pred EEEEEECCCCCCCCCHHHHHHCCCCCC----------CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCE
Q ss_conf 999985198899488445510033466----------55678888734058999999998199999996049941
Q 004636 512 RVQVKDSGSGISPQDIPNLFTKFAQNQ----------AIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKG 576 (740)
Q Consensus 512 ~i~V~DtG~GI~~e~l~~iF~~F~~~~----------~~~~~~~~GtGLGLaI~k~iv~~~gG~I~v~S~~~g~G 576 (740)
.+.|+|||+||..+++.+-+....+.. .....-.+--|+|++-|--+. .++.+.|...+..
T Consensus 72 ~l~I~DnGiGMt~~el~~~LgtIa~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~FmVa----d~v~V~sk~~~~~ 142 (208)
T d1uyla_ 72 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----EKVTVITKHNDDE 142 (208)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE----EEEEEEEECTTSC
T ss_pred EEEEECCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEECC----CCEEEEEECCCCC
T ss_conf 8999728954549999865121132334889986440121002202044257765226----8148998447754
No 68
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=65.21 E-value=2.5 Score=16.25 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=68.3
Q ss_pred CEEEEE----CCCHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 237760----684678999999987519959996---9998899987-89992999836899999999999998751048
Q 004636 613 LKVLVM----DENGVSRSVTKGLLLHLGCDVMTV---SSVEECFRVV-SHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRR 684 (740)
Q Consensus 613 ~~vLiv----dD~~~~r~~l~~~L~~~g~~v~~a---~~g~eal~~~-~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~ 684 (740)
.+|++. |-+..-...+...|+..||+|... .+.++..+.. ++.+|+|.+...+.. ..+.++.+.+..+..
T Consensus 38 pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~--~~~~~~~l~~~L~~~ 115 (168)
T d7reqa2 38 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGG--HLTLVPALRKELDKL 115 (168)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSC--HHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCC--CHHHHHHHHHHHHHC
T ss_conf 869999578617789999999999867851420787676899999997159988999557653--367999999999856
Q ss_pred C-CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9-9956999915899887999998289859979999889
Q 004636 685 H-ERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEK 722 (740)
Q Consensus 685 ~-~~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~ 722 (740)
. ..++| ++.+...+.+.....+.|++++...=-+..+
T Consensus 116 g~~~v~V-ivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e 153 (168)
T d7reqa2 116 GRPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPE 153 (168)
T ss_dssp TCTTSEE-EEEESCCGGGHHHHHHHTEEEEECTTCCHHH
T ss_pred CCCCEEE-EEECCCCHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 9997189-9838989899999996897879796898799
No 69
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.54 E-value=2.2 Score=16.65 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCCCCEEEEECCCHH-HHHHHHHHHHHCCCEEEEE-CCHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 888723776068467-8999999987519959996-9998899987899929998368999
Q 004636 609 NFPGLKVLVMDENGV-SRSVTKGLLLHLGCDVMTV-SSVEECFRVVSHEHQVVFMDVCVPG 667 (740)
Q Consensus 609 ~~~~~~vLivdD~~~-~r~~l~~~L~~~g~~v~~a-~~g~eal~~~~~~~dlil~D~~mp~ 667 (740)
+|.+++||++.|... .++..+.+|...|+.++.. .+-.+.-+.....+|+++.|..+|.
T Consensus 2 pF~~l~vl~vs~~~~~F~e~Ws~IL~~~Ga~vV~~~~~~~~~sd~~~~~~DVvvTD~scp~ 62 (106)
T d1kzyc2 2 PFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPA 62 (106)
T ss_dssp TTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCCEEEECCCCCH
T ss_conf 8766289998066401899999999967946864034650222476443658996798989
No 70
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}
Probab=43.64 E-value=5.5 Score=13.85 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHCCCCEEEEEECCCCCCCH-----HHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 8467899999998751995999--69998899987899929998368999999-----9999999875104899956999
Q 004636 620 ENGVSRSVTKGLLLHLGCDVMT--VSSVEECFRVVSHEHQVVFMDVCVPGIDG-----YEVAVHIHDKFTRRHERPLIVA 692 (740)
Q Consensus 620 D~~~~r~~l~~~L~~~g~~v~~--a~~g~eal~~~~~~~dlil~D~~mp~~dG-----~e~~~~ir~~~~~~~~~~~II~ 692 (740)
|+....+..+.+.+ .||.|.. ..|..-|.++.+-. ...+|=+..|.-+| ...++.|+++ . ..|||+
T Consensus 110 D~~etl~Aae~Lv~-eGF~VlpY~~~D~v~ak~Le~~G-c~avMPlgsPIGSg~Gl~n~~~l~~i~~~----~-~vPvIv 182 (251)
T d1xm3a_ 110 DPVETLKASEQLLE-EGFIVLPYTSDDVVLARKLEELG-VHAIMPGASPIGSGQGILNPLNLSFIIEQ----A-KVPVIV 182 (251)
T ss_dssp CHHHHHHHHHHHHH-TTCCEEEEECSCHHHHHHHHHHT-CSCBEECSSSTTCCCCCSCHHHHHHHHHH----C-SSCBEE
T ss_pred CHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHCC-CHHHHHHHHHHHCCCCCCCHHHHHHHHHC----C-CCCEEE
T ss_conf 87799999999986-89679996178989999998748-71388766454148875786799999861----8-966897
Q ss_pred EECCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHH
Q ss_conf 91589988799999828985997-----9999889999999997
Q 004636 693 LTGSTDNLTKDNCMRVGMDGVIL-----KPVSLEKMRSVLSDLL 731 (740)
Q Consensus 693 lta~~~~~~~~~~l~~Ga~~~l~-----KP~~~~~L~~~i~~~l 731 (740)
=.+-..+.+...+++.|+|++|. +--++-.+..+.+...
T Consensus 183 DAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av 226 (251)
T d1xm3a_ 183 DAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAV 226 (251)
T ss_dssp ESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHH
T ss_conf 35889889999999703999994436561899899999999999
No 71
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=32.92 E-value=7.9 Score=12.72 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHCC---------CEEEEE---CCHHHHHHHH-CCCCEEEEEECCCCCCCH-HHHHHHHHHHHCCC
Q ss_conf 684678999999987519---------959996---9998899987-899929998368999999-99999998751048
Q 004636 619 DENGVSRSVTKGLLLHLG---------CDVMTV---SSVEECFRVV-SHEHQVVFMDVCVPGIDG-YEVAVHIHDKFTRR 684 (740)
Q Consensus 619 dD~~~~r~~l~~~L~~~g---------~~v~~a---~~g~eal~~~-~~~~dlil~D~~mp~~dG-~e~~~~ir~~~~~~ 684 (740)
|-+..-..++..+|+..| |+|.-- .+.++.++.+ ++.+|+|-+...|....+ ...++++-+..+..
T Consensus 30 D~HdiG~~iv~~~l~~~G~~~~~~~~~~eVi~LG~~vp~e~~v~~a~e~~~d~VglS~l~t~~~~h~~~~~~~i~~l~~~ 109 (160)
T d1xrsb1 30 DAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAE 109 (160)
T ss_dssp CCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 47788999999999976985424566249996788899999999998639999998504344402677788899999973
Q ss_pred C--CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9--9956999915899887999998289859979999889999999997065
Q 004636 685 H--ERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEHR 734 (740)
Q Consensus 685 ~--~~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 734 (740)
. ..++|+ +.+.... ...+.+.|+|.|...=.+..++...+...+..+
T Consensus 110 g~~d~v~vi-vGG~~~~--~~~a~~~GaD~~f~~g~~a~~~a~~l~~~l~~r 158 (160)
T d1xrsb1 110 GLRDRFVLL-CGGPRIN--NEIAKELGYDAGFGPGRFADDVATFAVKTLNDR 158 (160)
T ss_dssp TCGGGSEEE-EECTTCC--HHHHHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEE-ECCCCCC--HHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 998755999-8089799--999998699888389988999999999999876
No 72
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=29.22 E-value=9.1 Score=12.30 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=69.9
Q ss_pred CEEEEE--CC---CHHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHH-CCCCEEEEEECCCCCC--CHHHHHHHHHHHHC
Q ss_conf 237760--68---4678999999987519959996--9998899987-8999299983689999--99999999987510
Q 004636 613 LKVLVM--DE---NGVSRSVTKGLLLHLGCDVMTV--SSVEECFRVV-SHEHQVVFMDVCVPGI--DGYEVAVHIHDKFT 682 (740)
Q Consensus 613 ~~vLiv--dD---~~~~r~~l~~~L~~~g~~v~~a--~~g~eal~~~-~~~~dlil~D~~mp~~--dG~e~~~~ir~~~~ 682 (740)
++|+++ .+ +..-..+...+|+..|+++... -+..+..+.. ....|++.+...+... -.-++++.||.
T Consensus 36 P~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~~~~~~e~v~aa~~~~a~vvvicssd~~y~~~~~~~~~aLk~--- 112 (163)
T d7reqb2 36 PKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKA--- 112 (163)
T ss_dssp CBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEESCCHHHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH---
T ss_conf 86998767974430007999999998168601568888948999999947998899845761048789999999985---
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 489995699991589988799999828985997999988999999999706
Q 004636 683 RRHERPLIVALTGSTDNLTKDNCMRVGMDGVILKPVSLEKMRSVLSDLLEH 733 (740)
Q Consensus 683 ~~~~~~~II~lta~~~~~~~~~~l~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 733 (740)
..... +++..+.....+.....++|+|+|+.--.+.-+....+.+.+..
T Consensus 113 -ag~~~-~vlaGg~~~~~d~~~l~~aGVd~~i~~G~d~~~~l~~l~~~lGv 161 (163)
T d7reqb2 113 -AGAKA-LYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTLDILGV 161 (163)
T ss_dssp -TTCSE-EEEESCGGGGGGGHHHHHHHCCEEECTTCCHHHHHHHHHHHTTC
T ss_pred -CCCCE-EEEEECCCCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf -64560-58970688823599999679876841997699999999999667
No 73
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=25.13 E-value=11 Score=11.81 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=57.0
Q ss_pred EEEEECCCHHHHHHHHHHHHH----CC--C-EEEEECCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 377606846789999999875----19--9-5999699988999878999299983689999999999999875104899
Q 004636 614 KVLVMDENGVSRSVTKGLLLH----LG--C-DVMTVSSVEECFRVVSHEHQVVFMDVCVPGIDGYEVAVHIHDKFTRRHE 686 (740)
Q Consensus 614 ~vLivdD~~~~r~~l~~~L~~----~g--~-~v~~a~~g~eal~~~~~~~dlil~D~~mp~~dG~e~~~~ir~~~~~~~~ 686 (740)
.+||-|.+......+...++. .+ . -.+.+.+.+++.+++...+|+|++|-..|+ +=-++.+.++. ..+
T Consensus 50 ~ilikdNHi~~~g~~~~~~~~~~~~~~~~~~I~VEv~~~~e~~~a~~~g~d~i~LDn~~pe-~~k~~~~~lk~----~~~ 124 (170)
T d1o4ua1 50 CVMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPE-EVKDISRRIKD----INP 124 (170)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESCCHH-HHHHHHHHHHH----HCT
T ss_pred CEEECCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCEEEECCCCHH-HHHHHHHHHHH----HCC
T ss_conf 0477104897732478899998851798856999708399999988457559998575726-67679999986----089
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCE
Q ss_conf 95699991589988799999828985
Q 004636 687 RPLIVALTGSTDNLTKDNCMRVGMDG 712 (740)
Q Consensus 687 ~~~II~lta~~~~~~~~~~l~~Ga~~ 712 (740)
.+ .+..++....+...+.-+.|+|-
T Consensus 125 ~i-~lEaSGGI~~~ni~~~a~~GVD~ 149 (170)
T d1o4ua1 125 NV-IVEVSGGITEENVSLYDFETVDV 149 (170)
T ss_dssp TS-EEEEEECCCTTTGGGGCCTTCCE
T ss_pred CE-EEEEECCCCHHHHHHHHHCCCCE
T ss_conf 67-99987899999999999759999
Done!