Query 004637
Match_columns 740
No_of_seqs 415 out of 5814
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 18:54:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004637.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1933-1937//hhsearch_pdb/004637hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 389.5 18.3 252 451-729 41-322 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 384.0 14.7 251 451-728 13-291 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 381.9 16.0 247 453-726 28-306 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 379.4 18.8 251 449-726 34-300 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 374.4 14.6 262 441-728 54-349 (353)
6 3hmm_A TGF-beta receptor type- 1.0 1 1 371.1 10.1 261 452-728 4-299 (303)
7 4fie_A Serine/threonine-protei 1.0 1 1 365.4 18.2 243 450-721 150-402 (423)
8 4b9d_A Serine/threonine-protei 1.0 1 1 365.3 15.8 243 450-720 23-277 (350)
9 4fih_A Serine/threonine-protei 1.0 1 1 364.9 17.7 244 450-722 73-326 (346)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 363.6 15.5 250 451-733 58-327 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=389.52 Aligned_cols=252 Identities=22% Similarity=0.286 Sum_probs=203.2
Q ss_pred CCCCCCCEEECCCCCCEEEEEEC------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCC
Q ss_conf 49999992320787408998834------998999999531245573689999999860168641113103353035899
Q 004637 451 NNFDPTNLIGEGSQGQLYKGFLT------DGSRVSVKCLKLKQRHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHP 524 (740)
Q Consensus 451 ~~f~~~~~lG~G~~g~Vyk~~~~------~g~~vavK~l~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~ 524 (740)
++|...+.||+|+||.||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~------- 113 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT------- 113 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-------
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-------
T ss_conf 9928877971477848998998786657789699999977579799999999999998589989996989999-------
Q ss_pred CCCCCEEEEEECCCCCCHHHHCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCE
Q ss_conf 99972699984245764001101236------------788789999999999999999998719999802038889951
Q 004637 525 NTGSTVFLVLEHISNGSLRDYLTDWK------------KKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENI 592 (740)
Q Consensus 525 ~~~~~~~lv~Ey~~~GsL~~~l~~~~------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NI 592 (740)
+...+++|||||++|+|.++++... ....++|.+++.|+.|+|+||.|||+ .+||||||||+||
T Consensus 114 -~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NI 189 (329)
T 4aoj_A 114 -EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNC 189 (329)
T ss_dssp -SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGE
T ss_pred -ECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHE
T ss_conf -899899999827999399999860754100122112457889999999999999999999840---8842266667648
Q ss_pred EECCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH-CCCCCCCCCCCH
Q ss_conf 114999244705899888888-----------87776445200279999986643303699999883-999988884201
Q 004637 593 LLDKALTAKLSGYNIPLPSKK-----------GLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVIT-GKQVKSTSEVDG 660 (740)
Q Consensus 593 Lld~~~~~kl~DFGl~~~~~~-----------~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~Ellt-G~~p~~~~~~~~ 660 (740)
|+++++.+||+|||+++.... ++..+++||... ...++.++|||||||++|||+| |+.||.+.....
T Consensus 190 Ll~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~-~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~ 268 (329)
T 4aoj_A 190 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIL-YRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE 268 (329)
T ss_dssp EEETTTEEEECCCC----------------CCCCGGGCCHHHHT-TCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH
T ss_pred EECCCCCEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHC-CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 98899968976660333656787530047645565665826544-79999663001057899999828999999989999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 478888854118764221369322387828899999999976246698989998999999565342024
Q 004637 661 LKLQLETCLAEAPSKLRAEADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQYSIQVQE 729 (740)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~ 729 (740)
+...+..... ... +..++.++.+|+.+||+.||++||+|.||++.|+.+.+.+.
T Consensus 269 ~~~~i~~g~~---~~~------------p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp 322 (329)
T 4aoj_A 269 AIDCITQGRE---LER------------PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 322 (329)
T ss_dssp HHHHHHHTCC---CCC------------CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCC---CCC------------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 9999980898---998------------64463999999999747596579299999999998745885
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=383.95 Aligned_cols=251 Identities=21% Similarity=0.304 Sum_probs=201.9
Q ss_pred CCCCCCCEEECCCCCCEEEEEEC------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCC
Q ss_conf 49999992320787408998834------998999999531245573689999999860168641113103353035899
Q 004637 451 NNFDPTNLIGEGSQGQLYKGFLT------DGSRVSVKCLKLKQRHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHP 524 (740)
Q Consensus 451 ~~f~~~~~lG~G~~g~Vyk~~~~------~g~~vavK~l~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~ 524 (740)
++|...+.||+|+||.||+|++. ++..||||+++.......++|.+|++++++++|||||+++|+|.
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~------- 85 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCV------- 85 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-------
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE-------
T ss_conf 8929824982078829999998776667788799999967778589999999999998589988862879995-------
Q ss_pred CCCCCEEEEEECCCCCCHHHHCCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEE
Q ss_conf 99972699984245764001101236----------78878999999999999999999871999980203888995111
Q 004637 525 NTGSTVFLVLEHISNGSLRDYLTDWK----------KKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENILL 594 (740)
Q Consensus 525 ~~~~~~~lv~Ey~~~GsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NILl 594 (740)
++...++|||||++|+|.++|+... ....++|..++.|+.|+|+||.|||+ ++|+||||||+|||+
T Consensus 86 -~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl 161 (299)
T 4asz_A 86 -EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLV 161 (299)
T ss_dssp -SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEE
T ss_pred -ECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEE
T ss_conf -6998999998589996899998608642111235777889999999999999999999975---990467657763898
Q ss_pred CCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH-CCCCCCCCCCCHHH
Q ss_conf 4999244705899888888-----------87776445200279999986643303699999883-99998888420147
Q 004637 595 DKALTAKLSGYNIPLPSKK-----------GLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVIT-GKQVKSTSEVDGLK 662 (740)
Q Consensus 595 d~~~~~kl~DFGl~~~~~~-----------~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~Ellt-G~~p~~~~~~~~~~ 662 (740)
++++.+||+|||+++.... ++..+++||... ...|+.++|||||||++|||+| |+.||.+.....+.
T Consensus 162 ~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~-~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~ 240 (299)
T 4asz_A 162 GENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM-YRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVI 240 (299)
T ss_dssp CGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH
T ss_pred CCCCCEEECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 799868988730010067887416647513470103889870-7999703667788999999980899999998999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 888885411876422136932238782889999999997624669898999899999956534202
Q 004637 663 LQLETCLAEAPSKLRAEADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQYSIQVQ 728 (740)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~ 728 (740)
..+...... .. +..++.++.+|+.+||+.||++||+|.||++.|+.+.+..
T Consensus 241 ~~i~~~~~~---~~------------p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 241 ECITQGRVL---QR------------PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp HHHHHTCCC---CC------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred HHHHCCCCC---CC------------CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 999808988---99------------7414399999999976879668929999999998777639
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=381.87 Aligned_cols=247 Identities=20% Similarity=0.271 Sum_probs=196.7
Q ss_pred CCCCCEEECCCCCCEEEEEEC------CCCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCCC
Q ss_conf 999992320787408998834------99899999953124-55736899999998601686411131033530358999
Q 004637 453 FDPTNLIGEGSQGQLYKGFLT------DGSRVSVKCLKLKQ-RHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHPN 525 (740)
Q Consensus 453 f~~~~~lG~G~~g~Vyk~~~~------~g~~vavK~l~~~~-~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~ 525 (740)
++..+.||+|+||.||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-------- 99 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVT-------- 99 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEEC--------
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--------
T ss_conf 858669135888489999985776588886999999880149689999999999998589989877364998--------
Q ss_pred CCCCEEEEEECCCCCCHHHHCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCE
Q ss_conf 9972699984245764001101236-------------788789999999999999999998719999802038889951
Q 004637 526 TGSTVFLVLEHISNGSLRDYLTDWK-------------KKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENI 592 (740)
Q Consensus 526 ~~~~~~lv~Ey~~~GsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NI 592 (740)
....+++|||||++|+|.++|+... ....++|..++.|+.|||+||.|||+ .+||||||||+||
T Consensus 100 ~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NI 176 (308)
T 4gt4_A 100 KDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNV 176 (308)
T ss_dssp SSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGE
T ss_pred ECCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCE
T ss_conf 8998899998189994999998627654333322111124689999999999999999999986---8997787362306
Q ss_pred EECCCCCEEEECCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH-CCCCCCCCCCCH
Q ss_conf 11499924470589988888-----------887776445200279999986643303699999883-999988884201
Q 004637 593 LLDKALTAKLSGYNIPLPSK-----------KGLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVIT-GKQVKSTSEVDG 660 (740)
Q Consensus 593 Lld~~~~~kl~DFGl~~~~~-----------~~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~Ellt-G~~p~~~~~~~~ 660 (740)
|+++++.+||+|||+++... .++..+++||... ...|+.++|||||||++|||+| |+.||.+....+
T Consensus 177 Ll~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~-~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~ 255 (308)
T 4gt4_A 177 LVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIM-YGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD 255 (308)
T ss_dssp EECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH
T ss_pred EECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 88799978988760202336777404734512577656989982-79999630001579999999968999999989999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 478888854118764221369322387828899999999976246698989998999999565342
Q 004637 661 LKLQLETCLAEAPSKLRAEADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQYSIQ 726 (740)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~ 726 (740)
+...+..... .+.+.+++.++.+++.+||+.||++||+|.||++.|+.+.+
T Consensus 256 ~~~~i~~~~~---------------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 256 VVEMIRNRQV---------------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp HHHHHHTTCC---------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred HHHHHHCCCC---------------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
T ss_conf 9999981998---------------99962036999999999758796579299999999985318
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=379.39 Aligned_cols=251 Identities=21% Similarity=0.331 Sum_probs=196.6
Q ss_pred HHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCCCC
Q ss_conf 844999999232078740899883499899999953124--557368999999986016864111310335303589999
Q 004637 449 ATNNFDPTNLIGEGSQGQLYKGFLTDGSRVSVKCLKLKQ--RHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHPNT 526 (740)
Q Consensus 449 ~~~~f~~~~~lG~G~~g~Vyk~~~~~g~~vavK~l~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~~ 526 (740)
..+++...+.||+|+||.||+|++.+ .||||+++... ....+.|.+|++++++++|||||+++|+|.
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~--------- 102 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT--------- 102 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC---------
T ss_pred CHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE---------
T ss_conf 47994984498208886899999899--6899999726899999999999999998589988746999997---------
Q ss_pred CCCEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEECCCCCEEEECCC
Q ss_conf 97269998424576400110123678878999999999999999999871999980203888995111499924470589
Q 004637 527 GSTVFLVLEHISNGSLRDYLTDWKKKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENILLDKALTAKLSGYN 606 (740)
Q Consensus 527 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NILld~~~~~kl~DFG 606 (740)
...+++|||||++|+|.++++. ....++|..++.|+.|+|+||+|||+ .+||||||||+|||+++++.+||+|||
T Consensus 103 ~~~~~iVmEy~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFG 177 (307)
T 3omv_A 103 KDNLAIVTQWCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFG 177 (307)
T ss_dssp SSSCEEEEECCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCS
T ss_pred CCEEEEEEECCCCCCHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECC
T ss_conf 8958999974899878898752--48999999999999999999999977---995278557899788899908994415
Q ss_pred CCCCCC-----------CCCCCCCCCCCCCC--CCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHCC
Q ss_conf 988888-----------88777644520027--9999986643303699999883999988884201478-888854118
Q 004637 607 IPLPSK-----------KGLESPLRGQYVSN--QPGDGAKEDVYQLGVILLQVITGKQVKSTSEVDGLKL-QLETCLAEA 672 (740)
Q Consensus 607 l~~~~~-----------~~~~~~~~~e~~~~--~~~~~~ksDVwSfGvil~ElltG~~p~~~~~~~~~~~-~~~~~~~~~ 672 (740)
+|+... .++..+++||.+.. ...|+.++|||||||++|||+||+.||.+........ .+....
T Consensus 178 la~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~--- 254 (307)
T 3omv_A 178 LATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGY--- 254 (307)
T ss_dssp SCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTC---
T ss_pred CCEECCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC---
T ss_conf 75424667764031564468772498786146899878687757289999999978899899996999999996588---
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 764221369322387828899999999976246698989998999999565342
Q 004637 673 PSKLRAEADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQYSIQ 726 (740)
Q Consensus 673 ~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~ 726 (740)
..|.+ ...+.+++.++.+++.+||+.||++||||.||++.|+.+..
T Consensus 255 -------~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 255 -------ASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp -------CCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred -------CCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf -------88872-00354456999999999757797689098999999999745
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=374.42 Aligned_cols=262 Identities=19% Similarity=0.325 Sum_probs=204.7
Q ss_pred CCHHHHHHHHCCCCCCCEEECCCCCCEEEEEECC------CCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCC-CCCCEE
Q ss_conf 8998999984499999923207874089988349------98999999531245-573689999999860168-641113
Q 004637 441 FSLEEIEEATNNFDPTNLIGEGSQGQLYKGFLTD------GSRVSVKCLKLKQR-HLPQSLMQHVELLSKLRH-RHLVSI 512 (740)
Q Consensus 441 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vyk~~~~~------g~~vavK~l~~~~~-~~~~~~~~e~~~l~~l~H-~niv~l 512 (740)
+..++++...++|+..+.||+|+||.||+|+... ++.||||+++.... ...+.|.+|+++|++++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred ECEEEEECCCCCCCCCCEEEEEECCCCCCHHHHCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 103353035899999726999842457640011012367-------------8878999999999999999999871999
Q 004637 513 LGHCILTYQDHPNTGSTVFLVLEHISNGSLRDYLTDWKK-------------KDMLKWPQRMAIIIGATRGVQFLHTGVA 579 (740)
Q Consensus 513 ~g~~~~~~~~~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~yLH~~~~ 579 (740)
+|+|.. .+..+++|||||++|+|.++|+.... ...++|..++.++.|||+||.|||+
T Consensus 134 ~g~~~~-------~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~--- 203 (353)
T 4ase_A 134 LGACTK-------PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS--- 203 (353)
T ss_dssp EEEECC-------TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---
T ss_pred EEEEEE-------CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---
T ss_conf 899994-------6977999998389897999997435666543334101103568999999999999999876762---
Q ss_pred CCCEECCCCCCCEEECCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH
Q ss_conf 9802038889951114999244705899888888-----------87776445200279999986643303699999883
Q 004637 580 PGIFGNNLKTENILLDKALTAKLSGYNIPLPSKK-----------GLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVIT 648 (740)
Q Consensus 580 ~~iiHrDlk~~NILld~~~~~kl~DFGl~~~~~~-----------~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~Ellt 648 (740)
.+||||||||+|||+++++.+||+|||+++.... ++..+++||.+. ...|+.++|||||||++|||+|
T Consensus 204 ~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~-~~~y~~ksDVwS~Gv~l~El~t 282 (353)
T 4ase_A 204 RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF-DRVYTIQSDVWSFGVLLWEIFS 282 (353)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH-HCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCEECCCCCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHH-CCCCCCCCCEEEHHHHHHHHHH
T ss_conf 784357467211305799978979654322245688720325401466656989994-6999975537406899999981
Q ss_pred -CCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -999988884201-478888854118764221369322387828899999999976246698989998999999565342
Q 004637 649 -GKQVKSTSEVDG-LKLQLETCLAEAPSKLRAEADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQYSIQ 726 (740)
Q Consensus 649 -G~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~ 726 (740)
|+.||.+..... +...+...... ...+ .+..++.+++.+||+.||++||||.||+++|+.+.+
T Consensus 283 ~G~~Pf~~~~~~~~~~~~i~~g~~~---~~p~------------~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 283 LGASPYPGVKIDEEFCRRLKEGTRM---RAPD------------YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp TSCCSSTTCCCSHHHHHHHHHTCCC---CCCT------------TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC---CCCC------------CCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999989899999999738988---8886------------578999999999768696679399999999999998
Q ss_pred CC
Q ss_conf 02
Q 004637 727 VQ 728 (740)
Q Consensus 727 ~~ 728 (740)
..
T Consensus 348 ~~ 349 (353)
T 4ase_A 348 AN 349 (353)
T ss_dssp HT
T ss_pred HH
T ss_conf 75
No 6
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=371.14 Aligned_cols=261 Identities=18% Similarity=0.290 Sum_probs=192.9
Q ss_pred CCCCCCEEECCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCCCCCCCEE
Q ss_conf 99999923207874089988349989999995312455736899999998601686411131033530358999997269
Q 004637 452 NFDPTNLIGEGSQGQLYKGFLTDGSRVSVKCLKLKQRHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHPNTGSTVF 531 (740)
Q Consensus 452 ~f~~~~~lG~G~~g~Vyk~~~~~g~~vavK~l~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~~~~~~~ 531 (740)
+|.+.+.||+|+||.||+|++ +|+.||||+++..... ...+..|+..+.+++|||||+++|+|..... ....++
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~----~~~~~~ 77 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNG----TWTQLW 77 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECS----SSEEEE
T ss_pred EEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEECCC----CCEEEE
T ss_conf 899978984089939999999-9989999998831336-6999999999860899988709999984688----723788
Q ss_pred EEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCEECCCCCCCEEECCCCCEEEECCC
Q ss_conf 99842457640011012367887899999999999999999987199-----9980203888995111499924470589
Q 004637 532 LVLEHISNGSLRDYLTDWKKKDMLKWPQRMAIIIGATRGVQFLHTGV-----APGIFGNNLKTENILLDKALTAKLSGYN 606 (740)
Q Consensus 532 lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~iiHrDlk~~NILld~~~~~kl~DFG 606 (740)
+|||||++|+|.++++. ..++|..+.+++.|+|+||+|||+.+ .++|+||||||+|||+|.++.+||+|||
T Consensus 78 lV~Ey~~~gsL~~~l~~----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFG 153 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNR----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 153 (303)
T ss_dssp EEEECCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred EEECCCCCCCHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECC
T ss_conf 77517899968999975----79998999999999999999999852400478987624678420899889978998479
Q ss_pred CCCCCC-------------CCCCCCCCCCCCCCCC-----CCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCH--------
Q ss_conf 988888-------------8877764452002799-----99986643303699999883999988884201--------
Q 004637 607 IPLPSK-------------KGLESPLRGQYVSNQP-----GDGAKEDVYQLGVILLQVITGKQVKSTSEVDG-------- 660 (740)
Q Consensus 607 l~~~~~-------------~~~~~~~~~e~~~~~~-----~~~~ksDVwSfGvil~ElltG~~p~~~~~~~~-------- 660 (740)
+++... .++..+++||...... .++.++|||||||++|||+||+.|+.......
T Consensus 154 la~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~ 233 (303)
T 3hmm_A 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 233 (303)
T ss_dssp TCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSC
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCC
T ss_conf 87455677773221046424664626988845654556776570676664799999998789987766522353100254
Q ss_pred ---HHHHHHHHHHCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf ---4788888541187642213693223878-2889999999997624669898999899999956534202
Q 004637 661 ---LKLQLETCLAEAPSKLRAEADPSVRGTY-AYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQYSIQVQ 728 (740)
Q Consensus 661 ---~~~~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~ 728 (740)
....+.... .....+|.+.... ..+++..+.+++.+||+.||++||||.||++.|+.+.+.+
T Consensus 234 ~~~~~~~~~~~~------~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 234 SDPSVEEMRKVV------CEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp SSCCHHHHHHHH------TTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHH------HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 543099999987------502579988765566589999999999976059757959999999999889875
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=365.38 Aligned_cols=243 Identities=20% Similarity=0.340 Sum_probs=197.1
Q ss_pred HCCCCCCCEEECCCCCCEEEEEE-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCCCCCC
Q ss_conf 44999999232078740899883-49989999995312455736899999998601686411131033530358999997
Q 004637 450 TNNFDPTNLIGEGSQGQLYKGFL-TDGSRVSVKCLKLKQRHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHPNTGS 528 (740)
Q Consensus 450 ~~~f~~~~~lG~G~~g~Vyk~~~-~~g~~vavK~l~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~~~~ 528 (740)
.+.|+..+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|+.++|||||++++++. +..
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~--------~~~ 221 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL--------VGD 221 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE--------ETT
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--------ECC
T ss_conf 684386169624818489999999999899999986255468999999999998579989871689999--------899
Q ss_pred CEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf 26999842457640011012367887899999999999999999987199998020388899511149992447058998
Q 004637 529 TVFLVLEHISNGSLRDYLTDWKKKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENILLDKALTAKLSGYNIP 608 (740)
Q Consensus 529 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NILld~~~~~kl~DFGl~ 608 (740)
.+|+|||||++|+|.+++.. ..+++.....|+.|++.||.|||+ .+||||||||+|||++.++.+||+|||++
T Consensus 222 ~~~iVmEy~~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla 294 (423)
T 4fie_A 222 ELWVVMEFLEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFC 294 (423)
T ss_dssp EEEEEEECCTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCC
T ss_conf 99999969899828988761----698999999999999999999998---89044657877789858999898037265
Q ss_pred CCCC---------CCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8888---------8877764452002799999866433036999998839999888842014788888541187642213
Q 004637 609 LPSK---------KGLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVITGKQVKSTSEVDGLKLQLETCLAEAPSKLRAE 679 (740)
Q Consensus 609 ~~~~---------~~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (740)
+... .|+..|++||.+. ...|+.++||||+||++|||++|+.||.+.........+...... .+..
T Consensus 295 ~~~~~~~~~~~~~~GTp~YmAPEvl~-~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~---~~~~- 369 (423)
T 4fie_A 295 AQVSKEVPRRKSLVGTPYWMAPELIS-RLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP---RLKN- 369 (423)
T ss_dssp EECCSSCCCBCCCEECTTTCCHHHHT-TCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCC---CCSC-
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC---CCCC-
T ss_conf 47778876434666474727999977-999996899999999999999787998986999999999727998---8765-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 693223878288999999999762466989899989999995
Q 004637 680 ADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNL 721 (740)
Q Consensus 680 ~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L 721 (740)
......++.+|+.+||..||++||++.|++++-
T Consensus 370 ---------~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp 402 (423)
T 4fie_A 370 ---------LHKVSPSLKGFLDRLLVRDPAQRATAAELLKHP 402 (423)
T ss_dssp ---------TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCG
T ss_pred ---------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCH
T ss_conf ---------012999999999998678956890999996098
No 8
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=365.26 Aligned_cols=243 Identities=18% Similarity=0.274 Sum_probs=197.2
Q ss_pred HCCCCCCCEEECCCCCCEEEEEE-CCCCEEEEEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCCCC
Q ss_conf 44999999232078740899883-499899999953124--557368999999986016864111310335303589999
Q 004637 450 TNNFDPTNLIGEGSQGQLYKGFL-TDGSRVSVKCLKLKQ--RHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHPNT 526 (740)
Q Consensus 450 ~~~f~~~~~lG~G~~g~Vyk~~~-~~g~~vavK~l~~~~--~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~~ 526 (740)
.++|++.+.||+|+||.||+|+. .+|+.||||+++... ....+.+.+|++++++++|||||++++++. +
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~--------~ 94 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFE--------E 94 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE--------E
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--------E
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999--------8
Q ss_pred CCCEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEECCCCCEEEECCC
Q ss_conf 97269998424576400110123678878999999999999999999871999980203888995111499924470589
Q 004637 527 GSTVFLVLEHISNGSLRDYLTDWKKKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENILLDKALTAKLSGYN 606 (740)
Q Consensus 527 ~~~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NILld~~~~~kl~DFG 606 (740)
...+|+|||||++|+|.+++... +...+++.....|+.|++.||.|||+ .+|+||||||+|||++.++.+||+|||
T Consensus 95 ~~~~yiVmEy~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFG 170 (350)
T 4b9d_A 95 NGSLYIVMDYCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFG 170 (350)
T ss_dssp TTEEEEEEECCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCC
T ss_conf 99999999488998399999973-89999789999999999999999998---991513597899798789998976465
Q ss_pred CCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9888888---------8777644520027999998664330369999988399998888420147888885411876422
Q 004637 607 IPLPSKK---------GLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVITGKQVKSTSEVDGLKLQLETCLAEAPSKLR 677 (740)
Q Consensus 607 l~~~~~~---------~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (740)
+++.... ++..|++||.+. ...|+.++||||+||++|||+||+.||.+.+...+...+.. .......
T Consensus 171 la~~~~~~~~~~~~~~GT~~YmAPE~l~-~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~---~~~~~~~ 246 (350)
T 4b9d_A 171 IARVLNSTVELARACIGTPYYLSPEICE-NKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIIS---GSFPPVS 246 (350)
T ss_dssp EESCCCHHHHHHHHHHSCCTTCCHHHHT-TCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH---TCCCCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC---CCCCCCC
T ss_conf 2144068854101457883603999987-99989599999999999999978799899699999999980---8999997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 1369322387828899999999976246698989998999999
Q 004637 678 AEADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWN 720 (740)
Q Consensus 678 ~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~ 720 (740)
.. ...++.+|+.+||+.||++||++.|++++
T Consensus 247 ~~------------~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 247 LH------------YSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp TT------------SCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CC------------CCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 55------------79999999999855896679089999639
No 9
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=364.92 Aligned_cols=244 Identities=20% Similarity=0.334 Sum_probs=197.5
Q ss_pred HCCCCCCCEEECCCCCCEEEEEE-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCCCCCC
Q ss_conf 44999999232078740899883-49989999995312455736899999998601686411131033530358999997
Q 004637 450 TNNFDPTNLIGEGSQGQLYKGFL-TDGSRVSVKCLKLKQRHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHPNTGS 528 (740)
Q Consensus 450 ~~~f~~~~~lG~G~~g~Vyk~~~-~~g~~vavK~l~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~~~~ 528 (740)
.+.|+..+.||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|+.++|||||++++++. +..
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~--------~~~ 144 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL--------VGD 144 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEE--------ETT
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--------ECC
T ss_conf 575387079602728299999998999899999985276568999999999998679989991999999--------899
Q ss_pred CEEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEECCCCCEEEECCCCC
Q ss_conf 26999842457640011012367887899999999999999999987199998020388899511149992447058998
Q 004637 529 TVFLVLEHISNGSLRDYLTDWKKKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENILLDKALTAKLSGYNIP 608 (740)
Q Consensus 529 ~~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NILld~~~~~kl~DFGl~ 608 (740)
.+|+|||||++|+|.+++.. ..+++.....++.|++.||+|||+ .+||||||||+|||++.++.+||+|||++
T Consensus 145 ~~~ivmEy~~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla 217 (346)
T 4fih_A 145 ELWVVMEFLEGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFC 217 (346)
T ss_dssp EEEEEECCCTTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred EEEEEEECCCCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCC
T ss_conf 99999969899808999871----898999999999999999999998---88355627889978879998899027575
Q ss_pred CCCC---------CCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8888---------8877764452002799999866433036999998839999888842014788888541187642213
Q 004637 609 LPSK---------KGLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVITGKQVKSTSEVDGLKLQLETCLAEAPSKLRAE 679 (740)
Q Consensus 609 ~~~~---------~~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (740)
+... .++..|++||.+. ...|+.++||||+||++|||+||+.||.+.+.......+...... ...
T Consensus 218 ~~~~~~~~~~~~~~GTp~YmAPEvl~-~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~---~~~-- 291 (346)
T 4fih_A 218 AQVSKEVPRRKSLVGTPYWMAPELIS-RLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP---RLK-- 291 (346)
T ss_dssp EECCSSSCCBCCCCSCGGGCCHHHHT-TCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCC---CCS--
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC---CCC--
T ss_conf 36678877534656275827999977-999996899999999999999787998985999999999717999---887--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6932238782889999999997624669898999899999956
Q 004637 680 ADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQ 722 (740)
Q Consensus 680 ~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~ 722 (740)
.......++.+|+.+||..||++||++.|++++-.
T Consensus 292 --------~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~ 326 (346)
T 4fih_A 292 --------NLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPF 326 (346)
T ss_dssp --------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGG
T ss_pred --------CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHH
T ss_conf --------50229999999999986799568909999960986
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=363.57 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=197.7
Q ss_pred CCCCCCCEEECCCCCCEEEEEE-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCCCCCCC
Q ss_conf 4999999232078740899883-499899999953124557368999999986016864111310335303589999972
Q 004637 451 NNFDPTNLIGEGSQGQLYKGFL-TDGSRVSVKCLKLKQRHLPQSLMQHVELLSKLRHRHLVSILGHCILTYQDHPNTGST 529 (740)
Q Consensus 451 ~~f~~~~~lG~G~~g~Vyk~~~-~~g~~vavK~l~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~~~~~~~ 529 (740)
+.|...+.||+|+||.||+|+. .+|+.||||+++.... ..+|+.+++.++|||||++++++. ++..
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~--------~~~~ 124 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVR--------EGPW 124 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEE--------ETTE
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEE--------ECCE
T ss_conf 351768685138780999999889998999999788886-----999999998579989993999999--------8999
Q ss_pred EEEEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEECCCC-CEEEECCCCC
Q ss_conf 699984245764001101236788789999999999999999998719999802038889951114999-2447058998
Q 004637 530 VFLVLEHISNGSLRDYLTDWKKKDMLKWPQRMAIIIGATRGVQFLHTGVAPGIFGNNLKTENILLDKAL-TAKLSGYNIP 608 (740)
Q Consensus 530 ~~lv~Ey~~~GsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlk~~NILld~~~-~~kl~DFGl~ 608 (740)
+|+|||||++|+|.+++.. .+.+++.....++.|++.||+|||+ .+||||||||+|||++.++ .+||+|||++
T Consensus 125 ~~ivmEy~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla 198 (336)
T 4g3f_A 125 VNIFMELLEGGSLGQLIKQ---MGCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHA 198 (336)
T ss_dssp EEEEECCCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTC
T ss_pred EEEEEECCCCCCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCC
T ss_conf 9999966599869999987---6999999999999999999999998---890426167788799589997999627877
Q ss_pred CCCC--------------CCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8888--------------88777644520027999998664330369999988399998888420147888885411876
Q 004637 609 LPSK--------------KGLESPLRGQYVSNQPGDGAKEDVYQLGVILLQVITGKQVKSTSEVDGLKLQLETCLAEAPS 674 (740)
Q Consensus 609 ~~~~--------------~~~~~~~~~e~~~~~~~~~~ksDVwSfGvil~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~ 674 (740)
+... .|+..|++||.+. ...|+.++|||||||++|||+||+.||.+.....+...+......
T Consensus 199 ~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~-~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~--- 274 (336)
T 4g3f_A 199 LCLQPDGLGKSLLTGDYIPGTETHMAPEVVM-GKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPP--- 274 (336)
T ss_dssp EEC------------CCCCCCGGGCCHHHHT-TCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCG---
T ss_pred EECCCCCCCCCEECCCCCCCCCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC---
T ss_conf 6856787654022178545580200899988-999890899999999999999786998998999999999808998---
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH----CCCCCCC
Q ss_conf 4221369322387828899999999976246698989998999999565342----0245557
Q 004637 675 KLRAEADPSVRGTYAYDSLRTTVEITINCLSKDAAKRPSIEDVLWNLQYSIQ----VQEGWTS 733 (740)
Q Consensus 675 ~~~~~~d~~l~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~----~~~~~~~ 733 (740)
..+ . +.....++.+++.+||+.||++|||+.|+++.|..+.+ .+..|..
T Consensus 275 -~~~-~--------~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~ 327 (336)
T 4g3f_A 275 -IRE-I--------PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKG 327 (336)
T ss_dssp -GGG-S--------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSS
T ss_pred -CHH-C--------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf -002-5--------8667999999999976289768959999999999997544321698767
Done!