Query 004638
Match_columns 740
No_of_seqs 503 out of 2493
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1451 Oligophrenin-1 and rel 100.0 4.1E-60 8.8E-65 514.8 26.0 355 3-438 206-570 (812)
2 KOG4271 Rho-GTPase activating 100.0 2.1E-43 4.4E-48 400.8 20.7 545 162-737 286-885 (1100)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 2.1E-40 4.5E-45 334.4 19.8 188 230-435 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 4.2E-40 9.2E-45 334.4 20.7 196 227-438 2-202 (203)
5 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 6.4E-40 1.4E-44 330.3 20.3 190 229-438 1-191 (192)
6 cd04390 RhoGAP_ARHGAP22_24_25 100.0 8.7E-40 1.9E-44 331.1 19.7 190 228-435 1-199 (199)
7 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 2.5E-39 5.5E-44 331.7 20.2 198 229-438 1-208 (216)
8 cd04407 RhoGAP_myosin_IXB RhoG 100.0 3E-39 6.6E-44 323.7 19.5 184 230-430 1-186 (186)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 4.1E-39 9E-44 330.7 20.2 206 227-436 2-215 (220)
10 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 3.3E-39 7.2E-44 325.8 18.6 189 228-430 1-195 (195)
11 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 2.9E-39 6.3E-44 322.9 17.7 175 230-437 1-181 (182)
12 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 1E-38 2.2E-43 320.3 19.9 182 230-430 1-187 (187)
13 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 8.3E-39 1.8E-43 321.2 19.0 183 228-430 1-188 (188)
14 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.1E-38 2.3E-43 326.4 19.1 189 230-437 1-209 (213)
15 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.2E-38 4.8E-43 320.1 20.5 189 229-435 1-196 (196)
16 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1.9E-38 4.2E-43 320.2 19.2 190 226-435 2-195 (195)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 2.7E-38 5.8E-43 320.4 19.5 185 230-430 1-200 (200)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 2.5E-38 5.4E-43 317.2 18.4 183 230-429 1-185 (186)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 4.5E-38 9.6E-43 319.3 19.9 191 229-436 1-196 (202)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 6.1E-38 1.3E-42 319.0 19.5 186 241-438 6-203 (206)
21 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 7.1E-38 1.5E-42 315.3 18.6 184 230-435 1-192 (192)
22 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 1.1E-37 2.3E-42 312.4 19.2 160 230-390 1-163 (185)
23 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 8.2E-38 1.8E-42 322.3 18.7 187 229-435 1-225 (225)
24 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 1.2E-37 2.5E-42 316.5 19.2 186 230-430 1-203 (203)
25 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.4E-37 3E-42 312.8 17.8 176 229-437 1-189 (190)
26 cd04377 RhoGAP_myosin_IX RhoGA 100.0 2.5E-37 5.5E-42 310.0 19.6 184 230-430 1-186 (186)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 2.1E-37 4.6E-42 316.3 19.3 186 230-430 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 5.6E-37 1.2E-41 309.6 20.4 161 230-391 1-166 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 6E-37 1.3E-41 308.0 19.5 183 228-430 1-189 (189)
30 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.6E-36 3.4E-41 308.6 20.6 194 230-431 1-206 (207)
31 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.1E-36 4.6E-41 308.1 19.2 184 230-438 1-199 (208)
32 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 4E-36 8.6E-41 300.8 19.2 179 231-431 2-184 (184)
33 KOG4407 Predicted Rho GTPase-a 100.0 4.9E-37 1.1E-41 354.2 11.9 336 83-441 922-1360(1973)
34 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 1.1E-35 2.4E-40 299.5 19.3 177 241-434 14-192 (193)
35 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 8.1E-36 1.8E-40 299.3 17.9 178 230-430 1-187 (187)
36 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 1E-35 2.2E-40 304.0 18.4 188 230-437 1-210 (212)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.3E-35 2.8E-40 301.1 18.7 169 243-430 27-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 4.6E-35 1E-39 295.1 16.7 171 238-430 9-183 (200)
39 KOG1450 Predicted Rho GTPase-a 100.0 5.4E-32 1.2E-36 305.6 21.0 316 100-436 271-649 (650)
40 smart00324 RhoGAP GTPase-activ 100.0 3.6E-31 7.9E-36 261.5 19.2 169 243-430 2-173 (174)
41 KOG1117 Rho- and Arf-GTPase ac 100.0 1.6E-31 3.5E-36 301.2 15.3 266 98-436 627-897 (1186)
42 KOG4270 GTPase-activator prote 100.0 7.4E-30 1.6E-34 287.8 27.9 199 224-438 141-346 (577)
43 KOG2200 Tumour suppressor prot 100.0 1.7E-30 3.8E-35 285.6 16.0 206 226-436 297-511 (674)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 3.6E-30 7.7E-35 264.8 16.6 142 243-390 49-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 2E-29 4.4E-34 246.4 18.8 167 245-430 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 5.3E-30 1.2E-34 290.5 12.6 186 224-442 894-1090(1112)
47 PF00620 RhoGAP: RhoGAP domain 100.0 1E-28 2.2E-33 238.1 10.5 144 245-389 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 3.6E-28 7.9E-33 259.4 11.7 196 224-438 248-448 (467)
49 KOG2710 Rho GTPase-activating 99.9 1.4E-26 3E-31 252.5 14.9 182 244-436 94-292 (412)
50 KOG1453 Chimaerin and related 99.9 1.1E-24 2.3E-29 262.9 13.2 161 229-390 602-771 (918)
51 KOG4724 Predicted Rho GTPase-a 99.9 4.7E-25 1E-29 245.6 7.4 238 224-483 77-315 (741)
52 KOG3564 GTPase-activating prot 99.9 1.2E-23 2.6E-28 226.7 15.8 172 242-430 360-533 (604)
53 KOG4271 Rho-GTPase activating 99.8 4.6E-19 1E-23 203.4 9.4 158 227-385 915-1075(1100)
54 KOG1452 Predicted Rho GTPase-a 99.7 8.7E-18 1.9E-22 174.1 12.6 165 224-389 179-352 (442)
55 cd04405 RhoGAP_BRCC3-like RhoG 99.6 1.2E-15 2.7E-20 155.1 12.4 181 228-436 20-229 (235)
56 cd01251 PH_centaurin_alpha Cen 99.6 1.6E-15 3.6E-20 138.2 10.9 96 86-190 1-101 (103)
57 cd01233 Unc104 Unc-104 pleckst 99.6 2.9E-15 6.3E-20 135.7 11.1 97 84-189 2-98 (100)
58 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 8.1E-15 1.8E-19 131.7 10.0 90 87-188 2-93 (95)
59 cd01264 PH_melted Melted pleck 99.6 9.3E-15 2E-19 132.2 10.2 91 86-189 2-101 (101)
60 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 1.2E-14 2.7E-19 146.3 12.1 144 245-390 7-166 (198)
61 cd01260 PH_CNK Connector enhan 99.6 1.2E-14 2.7E-19 130.2 10.4 93 86-188 2-96 (96)
62 cd01238 PH_Tec Tec pleckstrin 99.6 1.3E-14 2.9E-19 132.9 9.8 94 85-188 1-106 (106)
63 cd01235 PH_SETbf Set binding f 99.5 1.7E-13 3.7E-18 123.4 10.5 89 87-189 2-101 (101)
64 cd01247 PH_GPBP Goodpasture an 99.5 1.9E-13 4.2E-18 121.8 10.5 90 86-187 1-90 (91)
65 cd01252 PH_cytohesin Cytohesin 99.5 2E-13 4.3E-18 128.6 11.0 97 86-192 2-116 (125)
66 cd01236 PH_outspread Outspread 99.5 1.9E-13 4.2E-18 124.6 9.0 89 86-186 1-101 (104)
67 cd01257 PH_IRS Insulin recepto 99.4 3.2E-13 7E-18 122.6 9.5 91 84-187 2-100 (101)
68 cd01250 PH_centaurin Centaurin 99.4 5.4E-13 1.2E-17 117.8 10.5 93 86-187 1-93 (94)
69 cd01241 PH_Akt Akt pleckstrin 99.4 1E-12 2.3E-17 119.5 10.7 97 84-188 1-101 (102)
70 cd01246 PH_oxysterol_bp Oxyste 99.4 2.2E-12 4.7E-17 113.3 10.4 91 86-188 1-91 (91)
71 PF00169 PH: PH domain; Inter 99.4 7.6E-12 1.6E-16 110.6 12.2 101 84-189 1-103 (104)
72 cd01253 PH_beta_spectrin Beta- 99.4 2.9E-12 6.3E-17 116.5 9.6 96 87-187 2-103 (104)
73 cd01266 PH_Gab Gab (Grb2-assoc 99.3 3.2E-12 7E-17 117.4 9.5 95 87-188 2-107 (108)
74 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 8.3E-12 1.8E-16 116.2 10.4 98 86-190 2-112 (117)
75 cd01244 PH_RasGAP_CG9209 RAS_G 99.3 8E-12 1.7E-16 112.9 9.5 77 98-187 17-97 (98)
76 cd01263 PH_anillin Anillin Ple 99.3 1.1E-11 2.3E-16 116.2 9.5 103 85-188 2-122 (122)
77 cd01249 PH_oligophrenin Oligop 99.3 7.9E-12 1.7E-16 112.9 8.3 97 86-187 1-103 (104)
78 KOG4370 Ral-GTPase effector RL 99.3 8.1E-12 1.8E-16 134.5 9.5 143 242-385 69-253 (514)
79 cd01245 PH_RasGAP_CG5898 RAS G 99.2 1.9E-11 4.1E-16 110.3 8.3 91 87-187 2-97 (98)
80 KOG0930 Guanine nucleotide exc 99.2 4.7E-11 1E-15 122.8 9.5 102 84-194 260-380 (395)
81 PF14389 Lzipper-MIP1: Leucine 99.2 1.3E-11 2.9E-16 109.2 3.3 57 680-736 1-58 (88)
82 KOG3565 Cdc42-interacting prot 99.2 4.3E-11 9.2E-16 139.3 8.0 145 243-389 217-366 (640)
83 PF15410 PH_9: Pleckstrin homo 99.2 6.3E-11 1.4E-15 110.9 7.5 102 86-189 2-118 (119)
84 cd01237 Unc112 Unc-112 pleckst 99.1 1.8E-10 3.8E-15 104.6 9.7 89 96-189 14-103 (106)
85 PF15413 PH_11: Pleckstrin hom 99.1 4.1E-10 8.8E-15 104.3 9.6 97 86-188 1-112 (112)
86 cd01254 PH_PLD Phospholipase D 99.0 1.4E-09 2.9E-14 102.2 10.4 76 101-188 32-121 (121)
87 PF15409 PH_8: Pleckstrin homo 99.0 1.3E-09 2.8E-14 96.4 8.9 86 88-188 1-88 (89)
88 cd01219 PH_FGD FGD (faciogenit 99.0 2.9E-09 6.3E-14 96.8 10.4 98 84-190 2-100 (101)
89 smart00233 PH Pleckstrin homol 99.0 6.2E-09 1.3E-13 90.2 11.8 100 85-189 2-101 (102)
90 cd00821 PH Pleckstrin homology 98.8 3E-08 6.4E-13 85.1 9.0 95 86-187 1-95 (96)
91 cd00900 PH-like Pleckstrin hom 98.7 8.3E-08 1.8E-12 83.0 10.6 96 87-188 2-99 (99)
92 cd01256 PH_dynamin Dynamin ple 98.7 5.8E-08 1.3E-12 86.2 9.4 99 84-188 1-104 (110)
93 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 2.5E-08 5.4E-13 89.2 5.1 99 85-192 3-113 (117)
94 KOG0521 Putative GTPase activa 98.7 3E-09 6.4E-14 126.9 -1.5 162 5-190 204-369 (785)
95 cd01220 PH_CDEP Chondrocyte-de 98.6 3.5E-07 7.5E-12 83.0 10.6 97 84-190 2-98 (99)
96 cd01259 PH_Apbb1ip Apbb1ip (Am 98.6 1.7E-07 3.7E-12 85.5 7.4 100 86-188 2-107 (114)
97 KOG4724 Predicted Rho GTPase-a 98.5 1.1E-07 2.5E-12 107.9 4.8 170 220-389 407-589 (741)
98 cd01243 PH_MRCK MRCK (myotonic 98.4 2.7E-06 5.9E-11 78.8 11.2 104 85-188 3-118 (122)
99 PF08101 DUF1708: Domain of un 98.3 5.1E-06 1.1E-10 93.0 12.9 146 244-390 8-168 (420)
100 cd01242 PH_ROK Rok (Rho- assoc 98.3 8.1E-06 1.7E-10 74.6 10.8 102 86-189 2-110 (112)
101 KOG0690 Serine/threonine prote 98.2 1.2E-06 2.6E-11 93.3 5.1 102 83-190 14-117 (516)
102 KOG3751 Growth factor receptor 98.1 8.6E-06 1.9E-10 90.9 7.8 106 81-188 314-423 (622)
103 KOG3640 Actin binding protein 98.0 6.7E-06 1.4E-10 96.7 6.3 109 82-191 988-1108(1116)
104 KOG1090 Predicted dual-specifi 97.9 6.2E-06 1.3E-10 96.9 3.1 92 84-189 1634-1731(1732)
105 PF14593 PH_3: PH domain; PDB: 97.8 0.00013 2.9E-09 66.7 10.4 88 83-190 12-100 (104)
106 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00034 7.3E-09 64.2 10.4 97 83-190 3-99 (104)
107 KOG0932 Guanine nucleotide exc 97.7 2.5E-05 5.5E-10 87.6 3.4 104 83-189 505-617 (774)
108 KOG2059 Ras GTPase-activating 97.6 0.00016 3.6E-09 83.4 8.7 116 84-210 565-684 (800)
109 PLN00188 enhanced disease resi 97.6 0.00036 7.9E-09 81.9 10.8 103 83-192 3-112 (719)
110 cd01261 PH_SOS Son of Sevenles 97.5 0.00061 1.3E-08 63.3 9.8 102 83-191 3-111 (112)
111 cd01258 PH_syntrophin Syntroph 97.3 0.00065 1.4E-08 62.6 7.1 98 88-187 3-107 (108)
112 cd01239 PH_PKD Protein kinase 97.2 0.0009 1.9E-08 61.8 6.6 94 86-188 2-117 (117)
113 PTZ00267 NIMA-related protein 97.2 0.00089 1.9E-08 76.9 7.8 100 82-190 375-477 (478)
114 KOG3543 Ca2+-dependent activat 97.0 0.00016 3.4E-09 82.0 -0.1 101 83-192 463-568 (1218)
115 cd01240 PH_beta-ARK Beta adren 96.9 0.0012 2.7E-08 60.1 4.6 96 84-189 3-98 (116)
116 PF15408 PH_7: Pleckstrin homo 96.8 0.00045 9.7E-09 60.1 0.9 92 87-188 1-96 (104)
117 cd01222 PH_clg Clg (common-sit 96.7 0.016 3.5E-07 52.5 10.4 92 84-189 4-95 (97)
118 KOG1453 Chimaerin and related 96.3 0.0019 4.2E-08 79.7 2.6 160 229-389 462-668 (918)
119 KOG0248 Cytoplasmic protein Ma 96.2 0.0029 6.4E-08 73.0 2.8 95 83-190 248-342 (936)
120 PLN02866 phospholipase D 96.2 0.031 6.7E-07 68.6 11.5 87 100-191 216-309 (1068)
121 PTZ00283 serine/threonine prot 96.0 0.016 3.4E-07 67.1 7.9 38 151-190 453-490 (496)
122 KOG3723 PH domain protein Melt 95.9 0.0034 7.4E-08 71.2 1.8 94 84-190 735-837 (851)
123 KOG3531 Rho guanine nucleotide 95.9 0.0032 7E-08 74.1 1.7 95 85-189 925-1019(1036)
124 PF12814 Mcp5_PH: Meiotic cell 95.7 0.13 2.9E-06 48.5 11.3 101 86-189 10-121 (123)
125 cd01262 PH_PDK1 3-Phosphoinosi 95.7 0.08 1.7E-06 47.1 9.1 86 84-188 1-87 (89)
126 KOG1739 Serine/threonine prote 95.2 0.023 5.1E-07 63.6 4.9 93 83-188 23-115 (611)
127 PF15404 PH_4: Pleckstrin homo 95.1 0.13 2.8E-06 52.0 9.5 33 86-120 1-33 (185)
128 KOG0517 Beta-spectrin [Cytoske 94.9 0.00064 1.4E-08 84.9 -8.8 102 84-190 2299-2410(2473)
129 cd01232 PH_TRIO Trio pleckstri 94.8 0.52 1.1E-05 44.1 12.1 101 84-189 5-112 (114)
130 cd01221 PH_ephexin Ephexin Ple 94.7 0.33 7.1E-06 46.1 10.6 97 84-186 3-119 (125)
131 cd01224 PH_Collybistin Collybi 94.7 0.32 6.9E-06 45.1 10.3 96 84-187 2-105 (109)
132 KOG0705 GTPase-activating prot 94.3 0.015 3.2E-07 66.4 0.6 35 153-189 445-479 (749)
133 KOG1117 Rho- and Arf-GTPase ac 94.3 0.089 1.9E-06 62.7 6.9 97 84-189 492-601 (1186)
134 KOG1449 Predicted Rho GTPase-a 94.0 0.012 2.6E-07 67.1 -0.8 73 357-438 1-73 (670)
135 KOG4424 Predicted Rho/Rac guan 93.2 0.094 2E-06 60.3 4.6 102 81-191 269-371 (623)
136 cd01231 PH_Lnk LNK-family Plec 93.2 0.29 6.2E-06 44.5 6.6 82 99-187 18-106 (107)
137 PF15406 PH_6: Pleckstrin homo 93.1 0.17 3.7E-06 46.5 5.1 69 106-187 43-111 (112)
138 cd01228 PH_BCR-related BCR (br 93.1 0.39 8.4E-06 43.3 7.2 88 84-188 3-93 (96)
139 cd01223 PH_Vav Vav pleckstrin 92.6 0.72 1.6E-05 43.2 8.7 85 102-191 20-113 (116)
140 KOG1449 Predicted Rho GTPase-a 92.6 0.038 8.2E-07 63.3 0.3 174 227-438 207-389 (670)
141 PF15405 PH_5: Pleckstrin homo 91.9 0.51 1.1E-05 45.4 7.1 38 151-188 97-134 (135)
142 cd01227 PH_Dbs Dbs (DBL's big 91.3 3.5 7.6E-05 39.7 12.0 82 103-190 30-116 (133)
143 KOG3549 Syntrophins (type gamm 89.7 0.69 1.5E-05 50.3 6.2 105 81-189 278-386 (505)
144 cd01225 PH_Cool_Pix Cool (clon 88.4 2.2 4.8E-05 39.6 7.7 82 102-189 28-109 (111)
145 cd01226 PH_exo84 Exocyst compl 88.3 3.3 7.2E-05 37.9 8.7 79 103-189 20-98 (100)
146 KOG4807 F-actin binding protei 86.4 0.012 2.7E-07 64.0 -9.3 81 100-189 33-114 (593)
147 KOG1737 Oxysterol-binding prot 86.4 0.51 1.1E-05 57.1 3.1 91 84-188 77-167 (799)
148 PF07820 TraC: TraC-like prote 80.1 2.5 5.5E-05 37.8 4.1 31 689-719 4-41 (92)
149 KOG4047 Docking protein 1 (p62 79.7 0.86 1.9E-05 51.6 1.4 30 84-113 8-37 (429)
150 KOG1738 Membrane-associated gu 79.0 0.39 8.4E-06 56.0 -1.6 56 84-143 562-618 (638)
151 KOG2391 Vacuolar sorting prote 78.1 4.8 0.0001 44.0 6.3 63 653-715 212-282 (365)
152 KOG3727 Mitogen inducible gene 76.4 0.41 8.8E-06 55.0 -2.4 87 99-189 372-458 (664)
153 KOG3551 Syntrophins (type beta 74.2 2.5 5.5E-05 46.8 3.0 105 83-187 291-399 (506)
154 PF15411 PH_10: Pleckstrin hom 68.7 55 0.0012 30.7 10.2 97 85-185 8-116 (116)
155 KOG0804 Cytoplasmic Zn-finger 68.0 11 0.00023 42.9 6.1 73 651-724 347-419 (493)
156 cd01255 PH_TIAM TIAM Pleckstri 65.5 39 0.00084 32.9 8.5 83 105-189 52-154 (160)
157 KOG4424 Predicted Rho/Rac guan 64.9 8.6 0.00019 44.9 4.8 94 86-189 499-595 (623)
158 PF10186 Atg14: UV radiation r 64.5 25 0.00053 37.5 8.1 47 647-693 62-108 (302)
159 PF09726 Macoilin: Transmembra 64.4 1.3E+02 0.0027 37.0 14.7 28 687-714 494-522 (697)
160 PF06698 DUF1192: Protein of u 62.6 18 0.00038 30.0 4.9 32 684-715 25-56 (59)
161 cd05134 RasGAP_RASA3 RASA3 (or 62.3 3.3 7.3E-05 45.3 0.9 29 83-111 279-310 (310)
162 cd05394 RasGAP_RASA2 RASA2 (or 61.0 2 4.3E-05 47.0 -1.1 28 84-111 283-313 (313)
163 KOG4140 Nuclear protein Ataxin 61.0 49 0.0011 38.1 9.5 41 664-713 273-314 (659)
164 KOG0248 Cytoplasmic protein Ma 60.8 4.6 0.0001 47.8 1.7 90 84-189 259-348 (936)
165 PRK13848 conjugal transfer pro 60.4 12 0.00026 33.5 3.9 27 691-717 7-39 (98)
166 cd05128 RasGAP_GAP1_like The G 59.3 3.2 7E-05 45.5 0.2 28 83-110 285-315 (315)
167 PRK10884 SH3 domain-containing 55.7 37 0.00081 35.1 7.2 62 649-714 94-159 (206)
168 cd05135 RasGAP_RASAL Ras GTPas 51.7 4.9 0.00011 44.5 0.0 27 84-110 303-333 (333)
169 PF05565 Sipho_Gp157: Siphovir 48.4 77 0.0017 31.4 7.9 63 644-706 22-87 (162)
170 PF10446 DUF2457: Protein of u 47.7 17 0.00037 41.3 3.4 13 674-686 395-407 (458)
171 KOG3523 Putative guanine nucle 47.4 40 0.00086 39.9 6.3 87 100-186 497-591 (695)
172 KOG0577 Serine/threonine prote 47.1 56 0.0012 39.0 7.4 25 306-330 218-242 (948)
173 PRK13729 conjugal transfer pil 47.1 55 0.0012 37.9 7.4 59 638-703 56-120 (475)
174 KOG2129 Uncharacterized conser 43.9 75 0.0016 36.0 7.5 66 650-715 210-313 (552)
175 PF04714 BCL_N: BCL7, N-termin 42.9 10 0.00023 30.2 0.6 21 99-119 27-47 (52)
176 COG1579 Zn-ribbon protein, pos 42.2 88 0.0019 33.2 7.5 70 648-717 10-82 (239)
177 PF08826 DMPK_coil: DMPK coile 41.4 1.2E+02 0.0027 25.3 6.7 29 677-705 29-57 (61)
178 COG5509 Uncharacterized small 41.4 50 0.0011 27.4 4.2 32 684-715 29-60 (65)
179 COG1579 Zn-ribbon protein, pos 41.4 1E+02 0.0022 32.7 7.8 35 671-705 87-121 (239)
180 COG4942 Membrane-bound metallo 41.0 1.1E+02 0.0025 34.9 8.6 56 659-714 200-258 (420)
181 PF04880 NUDE_C: NUDE protein, 40.9 23 0.00049 35.4 2.8 45 658-703 3-47 (166)
182 PF06005 DUF904: Protein of un 40.8 1.1E+02 0.0024 26.4 6.6 55 659-713 8-66 (72)
183 PF00038 Filament: Intermediat 40.2 90 0.002 33.7 7.6 61 647-707 74-137 (312)
184 KOG2077 JNK/SAPK-associated pr 39.3 65 0.0014 37.9 6.3 52 652-703 319-373 (832)
185 KOG4236 Serine/threonine prote 37.3 36 0.00079 39.9 4.0 102 82-190 411-524 (888)
186 KOG3520 Predicted guanine nucl 37.0 51 0.0011 41.9 5.5 46 150-195 682-727 (1167)
187 PRK11637 AmiB activator; Provi 36.7 1.6E+02 0.0035 33.6 9.3 32 674-705 220-251 (428)
188 cd01248 PH_PLC Phospholipase C 36.5 63 0.0014 29.8 4.9 37 151-187 77-114 (115)
189 KOG4095 Uncharacterized conser 35.9 15 0.00032 35.8 0.6 21 99-119 28-48 (165)
190 PF06524 NOA36: NOA36 protein; 35.1 47 0.001 35.4 4.1 8 180-187 105-112 (314)
191 PF08458 PH_2: Plant pleckstri 34.9 74 0.0016 29.7 4.9 38 151-191 68-105 (110)
192 PF04931 DNA_pol_phi: DNA poly 34.5 41 0.00089 41.6 4.3 10 296-305 477-486 (784)
193 PF10506 MCC-bdg_PDZ: PDZ doma 33.6 1.2E+02 0.0025 25.9 5.5 26 659-684 2-27 (67)
194 KOG1189 Global transcriptional 33.6 39 0.00084 41.0 3.5 15 424-438 828-842 (960)
195 PF12709 Kinetocho_Slk19: Cent 33.3 93 0.002 27.9 5.1 34 675-708 44-77 (87)
196 PF12210 Hrs_helical: Hepatocy 32.6 1.2E+02 0.0026 27.6 5.7 39 673-715 43-81 (96)
197 KOG3433 Protein involved in me 32.4 1.4E+02 0.0029 30.4 6.6 56 649-704 75-133 (203)
198 PF00038 Filament: Intermediat 32.0 1.4E+02 0.0031 32.2 7.6 66 651-716 50-125 (312)
199 KOG1060 Vesicle coat complex A 31.9 4E+02 0.0086 33.1 11.3 130 230-363 323-478 (968)
200 PF03962 Mnd1: Mnd1 family; I 30.9 1.2E+02 0.0027 30.8 6.3 52 648-704 76-127 (188)
201 cd00089 HR1 Protein kinase C-r 30.9 56 0.0012 27.7 3.3 32 688-719 3-34 (72)
202 PF11083 Streptin-Immun: Lanti 30.6 1.6E+02 0.0035 27.0 6.2 60 650-709 1-74 (99)
203 PF14197 Cep57_CLD_2: Centroso 30.6 2E+02 0.0042 24.6 6.5 55 651-705 1-65 (69)
204 PF10186 Atg14: UV radiation r 29.7 2.1E+02 0.0046 30.3 8.3 23 647-669 26-48 (302)
205 cd04769 HTH_MerR2 Helix-Turn-H 29.7 1.2E+02 0.0026 28.1 5.5 42 676-717 75-116 (116)
206 KOG3130 Uncharacterized conser 29.5 46 0.00099 37.5 3.1 29 470-498 281-309 (514)
207 KOG1264 Phospholipase C [Lipid 29.0 48 0.001 40.5 3.3 34 84-119 475-508 (1267)
208 TIGR03752 conj_TIGR03752 integ 28.9 2.1E+02 0.0045 33.3 8.2 23 658-680 69-91 (472)
209 PRK11637 AmiB activator; Provi 28.7 2E+02 0.0043 32.9 8.2 8 720-727 303-310 (428)
210 PF11285 DUF3086: Protein of u 28.5 65 0.0014 34.3 3.8 16 684-699 8-23 (283)
211 PF12325 TMF_TATA_bd: TATA ele 28.5 1.4E+02 0.0029 28.4 5.7 28 649-676 38-65 (120)
212 PF11559 ADIP: Afadin- and alp 28.3 1.5E+02 0.0032 28.7 6.2 14 651-664 69-82 (151)
213 KOG1264 Phospholipase C [Lipid 27.5 71 0.0015 39.2 4.3 41 150-190 871-911 (1267)
214 PF08549 SWI-SNF_Ssr4: Fungal 27.1 86 0.0019 37.7 4.9 58 650-714 354-412 (669)
215 PF06705 SF-assemblin: SF-asse 26.8 2.1E+02 0.0046 30.1 7.6 45 673-717 107-151 (247)
216 KOG3647 Predicted coiled-coil 26.2 2E+02 0.0043 31.0 6.8 39 652-694 120-158 (338)
217 KOG3915 Transcription regulato 26.0 2.2E+02 0.0048 32.9 7.5 23 653-676 501-523 (641)
218 PRK09343 prefoldin subunit bet 25.9 1.7E+02 0.0037 27.6 5.9 42 675-716 73-115 (121)
219 KOG1832 HIV-1 Vpr-binding prot 25.3 70 0.0015 39.6 3.8 10 100-109 1079-1088(1516)
220 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.1 2.1E+02 0.0046 27.2 6.5 46 658-703 69-114 (132)
221 TIGR01000 bacteriocin_acc bact 25.0 2.8E+02 0.006 31.9 8.7 44 675-718 160-203 (457)
222 PF12240 Angiomotin_C: Angiomo 24.8 1.1E+02 0.0023 31.7 4.5 31 672-702 13-43 (205)
223 PF09726 Macoilin: Transmembra 24.6 2E+02 0.0043 35.3 7.5 20 685-704 543-562 (697)
224 PF15463 ECM11: Extracellular 24.4 1.9E+02 0.0041 27.9 6.0 64 633-703 67-135 (139)
225 KOG4673 Transcription factor T 24.3 1.8E+02 0.0038 35.2 6.7 55 658-713 540-596 (961)
226 TIGR02231 conserved hypothetic 23.9 2.3E+02 0.0049 33.3 7.8 37 678-714 136-172 (525)
227 PF02050 FliJ: Flagellar FliJ 23.9 3.2E+02 0.0068 24.2 7.2 67 648-714 19-93 (123)
228 KOG4370 Ral-GTPase effector RL 23.8 69 0.0015 36.4 3.2 73 293-368 118-198 (514)
229 KOG4270 GTPase-activator prote 23.8 58 0.0013 38.7 2.8 132 245-389 59-197 (577)
230 COG5406 Nucleosome binding fac 23.3 92 0.002 37.2 4.1 15 424-438 880-894 (1001)
231 PRK10361 DNA recombination pro 23.0 2.1E+02 0.0046 33.4 7.0 51 653-703 65-115 (475)
232 COG3750 Uncharacterized protei 22.8 1.3E+02 0.0027 26.5 3.9 40 649-688 22-68 (85)
233 KOG0241 Kinesin-like protein [ 22.7 1.5E+02 0.0034 37.1 5.9 92 604-704 511-612 (1714)
234 TIGR02338 gimC_beta prefoldin, 22.3 2E+02 0.0044 26.4 5.6 39 675-713 69-108 (110)
235 PF03938 OmpH: Outer membrane 22.0 2.3E+02 0.005 27.2 6.2 31 678-708 78-108 (158)
236 cd00584 Prefoldin_alpha Prefol 21.4 1.4E+02 0.0031 27.9 4.5 30 676-705 90-119 (129)
237 PF10234 Cluap1: Clusterin-ass 21.3 2.6E+02 0.0056 30.2 6.8 57 649-705 170-236 (267)
238 PF12711 Kinesin-relat_1: Kine 21.2 2.5E+02 0.0055 25.1 5.6 39 664-703 46-86 (86)
239 TIGR03752 conj_TIGR03752 integ 21.0 2.2E+02 0.0047 33.2 6.5 29 648-676 63-94 (472)
240 PF10446 DUF2457: Protein of u 20.3 96 0.0021 35.5 3.5 8 714-721 434-441 (458)
241 KOG2264 Exostosin EXT1L [Signa 20.1 2.7E+02 0.0059 33.0 7.0 57 649-715 94-150 (907)
No 1
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-60 Score=514.80 Aligned_cols=355 Identities=22% Similarity=0.318 Sum_probs=298.2
Q ss_pred ceeecCCchhhHhhhcccchhccccccccccC-CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 004638 3 IFQIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAG 81 (740)
Q Consensus 3 ~~~~~~~~~~~~~~d~~~~~~~l~~~lq~tR~-~~~~r~~~~sl~~~~~~m~~~p~~~~~~~~p~~~~~~p~~~~~~~~~ 81 (740)
+|.|||.|- |+++||+||+++||+.||+||+ |++||.++++| +++|+++|..- +..
T Consensus 206 lf~f~h~g~-el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeL---kKkmke~p~e~-------------------k~p 262 (812)
T KOG1451|consen 206 LFSFFHVGS-ELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEEL---KKKMKESPTED-------------------KRP 262 (812)
T ss_pred HHHHhhhhH-HHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHH---HHHHhhCcccc-------------------cCC
Confidence 356666665 9999999999999999999999 99999999999 99999988621 111
Q ss_pred CceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCC--CCccceeecCCeeecCCCceeEecCCceEEEEE
Q 004638 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ--KGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (740)
Q Consensus 82 ~~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~--~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~ 159 (740)
.+.+++||||.+.|++..++|.|+||++.+.+..|.+-+-+..+. .|+...+.++.|..+...+ .+|+|||++.
T Consensus 263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCFDve 338 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCFDVE 338 (812)
T ss_pred CCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceeeeee
Confidence 236899999999999999999999999999999998876655332 3455558899998887654 4999999999
Q ss_pred ecCCCCceEEEEecChhhHHHHHHHHHHHHhcCCCCCCCCcccCcccccchhhcccchhhhcccCCCCCccccChhHhhh
Q 004638 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALE 239 (740)
Q Consensus 160 ~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~aPs~~~~~~~~~i~~~~~~~~~~~s~~~~~~k~~~~~vFGvpL~~~~~ 239 (740)
...++| +.++||.+++++..||.||+++. |... .+.| .+..+ ..+
T Consensus 339 ~~erpg-viTmQALSE~drrlWmeAMDG~e---p~Y~--s~~~--------~~~~~---------------------~~q 383 (812)
T KOG1451|consen 339 VEERPG-VITMQALSEKDRRLWMEAMDGAE---PSYT--SGEN--------CSTYK---------------------QTQ 383 (812)
T ss_pred ecccCC-eeehHhhhhhHHHHHHHHhcCCC---cccc--Cccc--------cchhh---------------------hhh
Confidence 998887 69999999999999999999874 3221 1111 00000 001
Q ss_pred cCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHH-hcC---CCC--CCCCCCcchhhhhHHHHHhhCCCCC
Q 004638 240 DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREF-EQG---KTE--FSPEEDAHIIADCVKYVIRELPSSP 313 (740)
Q Consensus 240 ~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~l-d~g---~~~--~~~~~d~h~vAslLK~fLReLPePL 313 (740)
-.+-...||.+||..|+..|++++|+||..|.+.+|++|+..+ +.- +.+ ..+.||+.+|++.||.|||.||+||
T Consensus 384 Ld~iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPL 463 (812)
T KOG1451|consen 384 LDDIGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPL 463 (812)
T ss_pred hhhhhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchh
Confidence 1223578999999999999999999999999999999998874 432 122 2368999999999999999999999
Q ss_pred CChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCC
Q 004638 314 VPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAG 392 (740)
Q Consensus 314 lp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~ 392 (740)
+++.++..||.|++.++ +.|+.+|+.+++ +||+.||.+|..|++||.+|+.|+..|.||+.||++||||+||||++
T Consensus 464 MTY~LHk~FI~AAKsdnq~yRv~aIHsLVH-kLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQE-- 540 (812)
T KOG1451|consen 464 MTYELHKVFINAAKSDNQTYRVDAIHSLVH-KLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQE-- 540 (812)
T ss_pred hHHHHHHHHHHHHhccchhhhHHHHHHHHH-hccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchH--
Confidence 99999999999999999 999999999998 99999999999999999999999999999999999999999999984
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 393 ECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 393 ~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
| .++|+|.+++++-||++||+||++||...
T Consensus 541 ----E------------TVAAiMdIKFQNIVVEILIEnyeKIF~t~ 570 (812)
T KOG1451|consen 541 ----E------------TVAAIMDIKFQNIVVEILIENYEKIFKTK 570 (812)
T ss_pred ----H------------HHHHHHcchhhhhhHHHHHhhhHHHhcCC
Confidence 2 26777778888888999999999999844
No 2
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-43 Score=400.79 Aligned_cols=545 Identities=28% Similarity=0.292 Sum_probs=415.2
Q ss_pred CCCCceEEEEecChhhHHHHHHHHHHHHhcCCCC-CCCCcccCcccccchhhcccc-hhhhccc-CCCCCccccChhHhh
Q 004638 162 GRDGRAFTLKAESLEDLYDWKTALENALAQAPST-GSATGQNGILKNDKAEAANGS-VEQLKEK-PVKFPVIGRPILLAL 238 (740)
Q Consensus 162 ~~dgrty~fqAdSeeE~~~WI~AI~~ai~~aPs~-~~~~~~~~i~~~~~~~~~~~s-~~~~~~k-~~~~~vFGvpL~~~~ 238 (740)
..+++.|...+++-++..+|-.++..+...||.+ +.+.+|+|+|.....++..+. +.-+.+- ++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4457789999999999999999999999999998 789999999999887655443 3223333 888999999998888
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCccCC---eeecCC-CHHHHHHHHHHHh-cCCCCC--CCCCCcc--hhhhhHH--HHHh
Q 004638 239 EDVDGTPSFLEKAIRFIEEHGVQVEG---ILRQAA-YVDDVHRRIREFE-QGKTEF--SPEEDAH--IIADCVK--YVIR 307 (740)
Q Consensus 239 ~~~~~VP~~l~~~i~~Le~~Gl~~EG---IFR~sG-~~~~v~~L~~~ld-~g~~~~--~~~~d~h--~vAslLK--~fLR 307 (740)
+..++-|.|..+.+.+|...|+..|| |-|.++ +...|+.-+..|. .|+..+ .+.++|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 88889999999999999999999999 999999 7777777666775 565433 3456898 6888888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCc-hHHHHHHHHHHHhc--CChhHHH----HHHHHHHHHHHHHhhhcccCCCcc-ch
Q 004638 308 ELPSSPVPASCCNALLEA--RRTDR-GSRVSAMRTAILET--FPEPNRK----LLQRILMMMQTVASSKNQNRMSTS-AV 377 (740)
Q Consensus 308 eLPePLlp~~l~~~~i~~--~~~~~-~~ri~~i~~lI~~~--LP~~N~~----lL~~Ll~~L~~Va~~s~~NkMta~-NL 377 (740)
.++..+.|..+|..+..+ +...- +.|+..++..|++. .|.+|+. ++.+|+..+..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999999888888 55555 77999999998877 8999888 888888889999999999999999 99
Q ss_pred hhhhcc-cccC-CCcCCccccccc-cccCCCChHH----HHHHHHHHH-HHHHHHHHHHhhcccccCCCCCCCccccccc
Q 004638 378 AACMAP-LLLR-PLLAGECEIETD-FNVGGDGSAQ----LLQAAAAAN-HAQAIVITLLEEYDKIFGEGSASPEELYSES 449 (740)
Q Consensus 378 AivFaP-~Llr-p~~~~~~~~e~~-~~~~g~~s~~----l~~a~~~~~-~~~~iVe~LIen~~~IF~~~~~s~~~l~~ds 449 (740)
+.|.+| .|++ |-..+.|.++.. |++.|+...+ +..|...++ .+|.+|..+++.|..||.+..++.......+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 6888 555888998887 9999999998 777777777 6999999999999999998866552222222
Q ss_pred ccC------------CCCCCCCCCccCc-CCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccccccCCcccc
Q 004638 450 ELS------------GSGTEEATDDDES-YEDDDQDGATPESDAYTDDDLDNASSRSCSESGESGDSVVYKDKKNIAPFL 516 (740)
Q Consensus 450 ~~~------------~~~se~s~d~~~~-~~d~~~~~~~~e~~~~~d~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 516 (740)
++. ++.-..-+|..+- .+++.|+..+| ......+..+.+....+| .+.|++ ++
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn----------~~~a~~~tee~~~~Sp~~-s~~~~~---~~ 671 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDN----------AAEACSTTEEVFNFSPRD-SSPYCN---SN 671 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCcc----------ccccccCchhhcCCChhh-cccccC---CC
Confidence 222 1111111111111 11122222211 122223333444444555 666666 66
Q ss_pred ccccccccCCCCCCCCCcCccccccCCCCCCcccccCCcchhhhcccccccccCCCcccccccccccccc-cCCCCcccc
Q 004638 517 YYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVD-VSSGTSSEF 595 (740)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 595 (740)
.+|++. ++|..-.++.+-+.+++.+..-|..++..+.+.+++ .+..+.-++... +...++..+
T Consensus 672 ~~d~d~-------ds~p~~Sp~~e~t~lsst~k~~S~~~~d~g~~~~~i---------~~~~~n~~~~r~i~~Vs~pi~P 735 (1100)
T KOG4271|consen 672 LQDSDE-------DSPPSYSPFREDTSLSSTSKDHSKLSMDLGGNDVGI---------SFTMNNFESKRNINKVSPPIKP 735 (1100)
T ss_pred ccccCC-------CCCCCcCCccCcccccCCccccccccccccCCCCCc---------ccccchhHhhhhcccCCCCCCC
Confidence 777772 333333344555677777766666677665543333 222233222222 233344444
Q ss_pred ccCCCCCccccccC-CCCCCCCcCCCCCccccccccccccCCCcCCCCCCchhhhhhh-----hhcchhHHHHHHHHhhh
Q 004638 596 KLNCQSPKSCLEKS-SPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQR-----LEDTKSDLQRKIADEVK 669 (740)
Q Consensus 596 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 669 (740)
+.-.+.....+.|+ ..-+..+..+++|...|||+.+.|++.+|++|.+++|++.||| ++.+|-|+|+||+||+|
T Consensus 736 k~vs~dvt~~a~kp~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k 815 (1100)
T KOG4271|consen 736 KAVSPDVTFDATKPDLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIK 815 (1100)
T ss_pred CcCCCCcccccccCcccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhh
Confidence 55455666667777 4445577778999999999999999999999999999999999 99999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHhhh--cCCCCCCCCCCcccccccCCC
Q 004638 670 GNEILEASLESRKKALHERRLALE-NDVARLKDQLQKERDKRTAMEAG--LGEFNGSFPIPDTIDEKVSLP 737 (740)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 737 (740)
+|+.||||+|||++++|+||++|| +++.|||+++|++|+.|.|...| |..+.|+. ....-|+||+++
T Consensus 816 ~~~~~QaSder~nks~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskk 885 (1100)
T KOG4271|consen 816 NNNKLQASDERRNKSDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKK 885 (1100)
T ss_pred cchhhhhhhhhcccccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHH
Confidence 999999999999999999999999 99999999999999999999999 89999987 556778888875
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=2.1e-40 Score=334.40 Aligned_cols=188 Identities=20% Similarity=0.382 Sum_probs=167.6
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC-C-CCCC--CCCCcchhhhhHHH
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-K-TEFS--PEEDAHIIADCVKY 304 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~-~~~~--~~~d~h~vAslLK~ 304 (740)
||+||+.++++ +..||.+|.+|++||+++|+.+|||||++|+..+|+++++.|+++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 99999999877 446999999999999999999999999999999999999999974 2 2332 23589999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcc
Q 004638 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (740)
Q Consensus 305 fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP 383 (740)
|||+||+||||+++|+.|+++.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALM-LLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999998887 889999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004638 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 384 ~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
+|||++... .+..+......+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~-----------------~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS-----------------ALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc-----------------HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999997311 02233445667899999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.2e-40 Score=334.39 Aligned_cols=196 Identities=24% Similarity=0.341 Sum_probs=174.1
Q ss_pred CCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCCcchhhhhH
Q 004638 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCV 302 (740)
Q Consensus 227 ~~vFGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vAslL 302 (740)
+++||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..++++++..+|.|.... ....|+|+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 57999999998865 5679999999999999999999999999999999999999999996432 3456999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhh
Q 004638 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (740)
Q Consensus 303 K~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivF 381 (740)
|.|||+||+||||.++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILN-KLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999988877 789999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 382 aP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
||+|||++..+. ..+.+.....+++.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~---------------~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS---------------LAEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh---------------hhhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999974210 012223445678999999999999999976
No 5
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.4e-40 Score=330.31 Aligned_cols=190 Identities=21% Similarity=0.399 Sum_probs=173.9
Q ss_pred ccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhHHHHHhh
Q 004638 229 VIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRE 308 (740)
Q Consensus 229 vFGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~fLRe 308 (740)
+||+||+.++. +..||.+|.+|++||+++|+.+|||||++|+..++++++..+|.|.......+|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999988 67899999999999999999999999999999999999999999976555778999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccC
Q 004638 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (740)
Q Consensus 309 LPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llr 387 (740)
||+||||++.|+.|+.+++..+ ..++..++.++. +||+.|+.+|+||+.||++|+.+++.|+||++|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLD-KLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998877 889999999886 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 388 p~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
++... .........++.+|++||+||+.||+++
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 97321 1123445678899999999999999975
No 6
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=8.7e-40 Score=331.11 Aligned_cols=190 Identities=23% Similarity=0.418 Sum_probs=168.1
Q ss_pred CccccChhHhhhcC-----CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhh
Q 004638 228 PVIGRPILLALEDV-----DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADC 301 (740)
Q Consensus 228 ~vFGvpL~~~~~~~-----~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAsl 301 (740)
.|||+||++++... ..||.+|.+|++||+++|+.+|||||++|+...++++++.||.|.. .+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 48999999887532 3499999999999999999999999999999999999999999964 45567899999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc---hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchh
Q 004638 302 VKYVIRELPSSPVPASCCNALLEARRTDR---GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (740)
Q Consensus 302 LK~fLReLPePLlp~~l~~~~i~~~~~~~---~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 378 (740)
||.|||+||+||+|+++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVS-ILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999887543 667888998886 99999999999999999999999999999999999
Q ss_pred hhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004638 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 379 ivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
+||||+|||++. +++ ..++..+..++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~------~~~-----------~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKV------EDP-----------ATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCC------CCH-----------HHHHhccHHHHHHHHHHHHhhhhcC
Confidence 999999999873 221 2334456677899999999999998
No 7
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-39 Score=331.71 Aligned_cols=198 Identities=26% Similarity=0.336 Sum_probs=173.4
Q ss_pred ccccChhHhhhc------CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC---CCCCCCCCcchhh
Q 004638 229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK---TEFSPEEDAHIIA 299 (740)
Q Consensus 229 vFGvpL~~~~~~------~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---~~~~~~~d~h~vA 299 (740)
|||+||+.++.+ +..||.+|.+|++||+++|+.+|||||++|+..+|++++..++.+. .......++|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 799999999875 2469999999999999999999999999999999999999999863 2223467999999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchh
Q 004638 300 DCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (740)
Q Consensus 300 slLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 378 (740)
++||.|||+||+||||.++|+.|+.+....+ ..++.+++.++. +||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVL-LLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988877 788999999886 99999999999999999999999999999999999
Q ss_pred hhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 379 ivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
+||||+||++...... ....+...+..+..++.+|++||+|++.||..+
T Consensus 160 ivfaP~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p 208 (216)
T cd04391 160 MIMAPNLFPPRGKHSK-----------DNESLQEEVNMAAGCANIMRLLIRYQDLLWTVP 208 (216)
T ss_pred HHhccccCCCCCCCCC-----------cchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 9999999998742211 112234555667788999999999999999843
No 8
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=3e-39 Score=323.73 Aligned_cols=184 Identities=24% Similarity=0.324 Sum_probs=166.0
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhHHHHHhh
Q 004638 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRE 308 (740)
Q Consensus 230 FGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLRe 308 (740)
|||||+.++.++..||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|.. .....+|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 9999999988888899999999999999999999999999999999999999999853 334578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccC
Q 004638 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (740)
Q Consensus 309 LPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llr 387 (740)
||+||||+++|+.|+.+.+..+ .+++.+++.+|. +||+.|+.+|++|+.||++|+.+++.|+||+.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLE-QLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998877 889999999885 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 388 p~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
++.. .++ +..+..+.+...+|++||+.
T Consensus 160 ~~~~-----~d~-----------~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDS-----SDP-----------LTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCC-----CCH-----------HHHHHhhhhhHHHHHHHhhC
Confidence 8632 111 33455677888999999973
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-39 Score=330.67 Aligned_cols=206 Identities=21% Similarity=0.351 Sum_probs=172.5
Q ss_pred CCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhHHH
Q 004638 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKY 304 (740)
Q Consensus 227 ~~vFGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~ 304 (740)
+.|||+||+.++++ +..||.+|.+|+.||+.+|+++|||||++|+..+|++|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988876 5679999999999999999999999999999999999999999864 334456799999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcc
Q 004638 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (740)
Q Consensus 305 fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP 383 (740)
|||+||+||||+++|+.|+.+.+..+ ++++.+++.++. +||+.||.+|++|+.||++|+.|++.||||+.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAIL-LLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999987766 889999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCcccccc---ccc--cCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 004638 384 LLLRPLLAGECEIET---DFN--VGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 384 ~Llrp~~~~~~~~e~---~~~--~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
+||+........+.. .+. ..|... .........+..+|.+||+||+.||.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFM 215 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999986432111000 000 001111 12234455677899999999999997
No 10
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.3e-39 Score=325.77 Aligned_cols=189 Identities=22% Similarity=0.327 Sum_probs=165.7
Q ss_pred CccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-C---CCCCCcchhhhhH
Q 004638 228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-F---SPEEDAHIIADCV 302 (740)
Q Consensus 228 ~vFGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~---~~~~d~h~vAslL 302 (740)
++||+||+.++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.||+|... + ....|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999998865 56799999999999999999 699999999999999999999998632 2 1346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhh
Q 004638 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (740)
Q Consensus 303 K~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivF 381 (740)
|.|||+||+||||+++|+.|+++.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+.+++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQ-QLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999998877 899999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 382 aP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
||+|||++... . + ..+-.++.+....++.||++||+|
T Consensus 159 ~P~L~~~~~~~-----~-----~--~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIE-----S-----A--CFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccc-----c-----c--cchHHHHHHHHhhhhhheehhhcC
Confidence 99999997421 1 0 001135566677888899999986
No 11
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=2.9e-39 Score=322.90 Aligned_cols=175 Identities=21% Similarity=0.371 Sum_probs=163.5
Q ss_pred cccChhHhhhcC-----CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhHHH
Q 004638 230 IGRPILLALEDV-----DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (740)
Q Consensus 230 FGvpL~~~~~~~-----~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~ 304 (740)
||+||..++++. ..||.+|.+|++||+++|+++|||||++|+...|+++++.|++|.......+|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999988763 359999999999999999999999999999999999999999997655567899999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcc
Q 004638 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (740)
Q Consensus 305 fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP 383 (740)
|||+||+||||.++|+.|+++....+ .+++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLK-ELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999988877 889999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 004638 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (740)
Q Consensus 384 ~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~ 437 (740)
+|+.+. .++..||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 998653 5899999999999986
No 12
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-38 Score=320.28 Aligned_cols=182 Identities=27% Similarity=0.395 Sum_probs=163.1
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-C--CCCCCcchhhhhHHHH
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-F--SPEEDAHIIADCVKYV 305 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~--~~~~d~h~vAslLK~f 305 (740)
||+||+.++++ +..||.+|.+|++||+.+|+++|||||++|+...+++++..+|.|... + ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999876 556999999999999999999999999999999999999999998532 2 3456999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhccc
Q 004638 306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL 384 (740)
Q Consensus 306 LReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~ 384 (740)
||+||+||||+++|+.|+++.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIK-SLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999888 899999999886 99999999999999999999999999999999999999999
Q ss_pred ccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 385 LLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 385 Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
|||++.. + ...+.....++.||++||++
T Consensus 160 ll~~~~~------~------------~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQE------T------------GNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCc------c------------hHHHHHhHHHHHHHHHHhhC
Confidence 9998731 1 11223445788999999985
No 13
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=8.3e-39 Score=321.17 Aligned_cols=183 Identities=20% Similarity=0.360 Sum_probs=164.9
Q ss_pred CccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCCcchhhhhHH
Q 004638 228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCVK 303 (740)
Q Consensus 228 ~vFGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vAslLK 303 (740)
++||++|+.+++. +..||.+|.+|++||+++|+.+|||||++|+..+|+.+++.|++|...+ ....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999876 5679999999999999999999999999999999999999999986432 34679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhc
Q 004638 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (740)
Q Consensus 304 ~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFa 382 (740)
.|||+||+||||.++|+.|+++.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|++|++.||||++|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILS-TLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888 889999999886 999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 383 P~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
|+|||.+... .......+++++|+.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999986311 1234567888999999865
No 14
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-38 Score=326.42 Aligned_cols=189 Identities=17% Similarity=0.294 Sum_probs=165.6
Q ss_pred cccChhHhhhcCC------------CCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCc
Q 004638 230 IGRPILLALEDVD------------GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDA 295 (740)
Q Consensus 230 FGvpL~~~~~~~~------------~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~ 295 (740)
||+||+.++++.+ .||.+|.+|++||+++|+.+|||||++|+..++++++..|+.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998732 3999999999999999999999999999999999999999998532 2345799
Q ss_pred chhhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhc-----c
Q 004638 296 HIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----Q 369 (740)
Q Consensus 296 h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~-----~ 369 (740)
|+||++||.|||+||+||||+++|+.|+.+.+..+ +.++..++.++. +||+.|+.+|+||+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~-~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYC-LLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888 778888888775 9999999999999999999998875 5
Q ss_pred cCCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 004638 370 NRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (740)
Q Consensus 370 NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~ 437 (740)
||||+.|||+||||+|||++.... ..+.....++.+|++||+||+.||.-
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~------------------~~~~~~~~~~~vv~~LI~n~~~if~v 209 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNP------------------NTGDEYFLAIEAVNYLIENNEEFCEV 209 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCc------------------chHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 999999999999999999973210 11223345678999999999999983
No 15
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-38 Score=320.10 Aligned_cols=189 Identities=21% Similarity=0.342 Sum_probs=168.4
Q ss_pred ccccChhHhhhc--CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC----CCCCCcchhhhhH
Q 004638 229 VIGRPILLALED--VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF----SPEEDAHIIADCV 302 (740)
Q Consensus 229 vFGvpL~~~~~~--~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~----~~~~d~h~vAslL 302 (740)
+||+||+..+.. +..||.+|.+|+.+|+.+|+++|||||++|+..+++++++.+|+|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 599999987654 3569999999999999999999999999999999999999999996432 2346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhh
Q 004638 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (740)
Q Consensus 303 K~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivF 381 (740)
|.|||+||+||||.++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIH-SLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888 899999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004638 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 382 aP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
||+|+|++..+ ...........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~-----------------~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN-----------------METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC-----------------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 11233455677899999999999998
No 16
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-38 Score=320.25 Aligned_cols=190 Identities=24% Similarity=0.418 Sum_probs=169.1
Q ss_pred CCCccccChhHhhhcC---CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhh
Q 004638 226 KFPVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADC 301 (740)
Q Consensus 226 ~~~vFGvpL~~~~~~~---~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAsl 301 (740)
+..+||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|.|.. .+....|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5679999999998763 5699999999999999999999999999999999999999999864 34333499999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhh
Q 004638 302 VKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (740)
Q Consensus 302 LK~fLReLPePLlp~~l~~~~i~~~~~~~~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivF 381 (740)
||.|||+||+||||.++|+.|+.+...+...++..++.++. +||+.|+.+|.+|+.||++|+.|++.|+|++.|||+||
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~-~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vf 160 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQ-TLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF 160 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheee
Confidence 99999999999999999999999876655778899999886 89999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004638 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 382 aP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
||+|||++... ........++.+|++||+||+.||
T Consensus 161 aP~l~~~~~~~-------------------~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 161 GPNLLWAKDAS-------------------MSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eccccCCCCcc-------------------cCHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999987320 112345677889999999999998
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-38 Score=320.43 Aligned_cols=185 Identities=20% Similarity=0.322 Sum_probs=163.3
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCcchhhhhHHHHHh
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIR 307 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLR 307 (740)
||+||+.++++ ++.||.+|.+|++||+++|+++|||||++|+..+|+++++.|++|... ....+++|+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999988876 677999999999999999999999999999999999999999998643 3456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCc
Q 004638 308 ELPSSPVPASCCNALLEARRTD------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (740)
Q Consensus 308 eLPePLlp~~l~~~~i~~~~~~------------~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta 374 (740)
+||+||||+++|+.|+++.+.. . .+++..++.+|. +||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLG-RLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999987531 1 468999999886 9999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 375 ~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
.|||+||||+|||++..... .+.+.........+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~---------------~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGDV---------------SMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCch---------------HHHHHhccchHHHHHHHHhhC
Confidence 99999999999999742110 134455667888999999986
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=2.5e-38 Score=317.15 Aligned_cols=183 Identities=22% Similarity=0.317 Sum_probs=165.0
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhHHHHHhh
Q 004638 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRE 308 (740)
Q Consensus 230 FGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLRe 308 (740)
||+||+.++.++..||.+|.+|++||+.+|+.+|||||++|+..+|+.+++.||.+.. .....+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 9999999887778899999999999999999999999999999999999999998753 334578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccC
Q 004638 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (740)
Q Consensus 309 LPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llr 387 (740)
||+||||+++|+.|+.+....+ .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+||+.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVID-QLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998887 888999999886 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 004638 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLE 429 (740)
Q Consensus 388 p~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIe 429 (740)
++... + .+.+++...+...+|++||.
T Consensus 160 ~p~~~-----d-----------~~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D-----------PLQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C-----------HHHHHHHHhhccchhhhhcc
Confidence 87311 1 13456677788889999874
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.5e-38 Score=319.28 Aligned_cols=191 Identities=24% Similarity=0.320 Sum_probs=165.5
Q ss_pred ccccChhHhhhc----CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhHHH
Q 004638 229 VIGRPILLALED----VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (740)
Q Consensus 229 vFGvpL~~~~~~----~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~ 304 (740)
|||+||..++.. +..||.+|.+|++||++ |+++|||||++|+..+++.++..+|+|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 46799999999999986 6999999999999999999999999987543 35689999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcc
Q 004638 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (740)
Q Consensus 305 fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP 383 (740)
|||+||+||||+++|+.|+.+....+ .+++.+++.++. +||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTC-LLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988877 788888888775 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 004638 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 384 ~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
+|||+..... .|.. .+......++.+|++||+||+.||-
T Consensus 158 ~L~~~~~~~~-------~~s~-------~~~~~~~~~~~vv~~lI~~~~~i~~ 196 (202)
T cd04394 158 NLFQSEEGGE-------KMSS-------STEKRLRLQAAVVQTLIDNASNIGI 196 (202)
T ss_pred eeecCCCccc-------ccch-------hHHHhHHHHHHHHHHHHHHHHHHcc
Confidence 9999873210 0100 1112345568999999999999996
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.1e-38 Score=319.01 Aligned_cols=186 Identities=23% Similarity=0.394 Sum_probs=162.9
Q ss_pred CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhHHHHHhhCCCCCCChhhH
Q 004638 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319 (740)
Q Consensus 241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~ 319 (740)
+..||.+|.+|++||+++|+++|||||++|+..+|+++++.||.|.. .+...+++|+||++||.|||+||+||||+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 44799999999999999999999999999999999999999999964 35567899999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhc-----------ccCCCccchhhhhcccccCC
Q 004638 320 NALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----------QNRMSTSAVAACMAPLLLRP 388 (740)
Q Consensus 320 ~~~i~~~~~~~~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~-----------~NkMta~NLAivFaP~Llrp 388 (740)
+.|+.+......+++..++.+|. +||+.|+.+|+||+.||++|+.|++ .||||+.|||+||||+|||+
T Consensus 86 ~~~i~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~ 164 (206)
T cd04376 86 TAFIGTALLEPDEQLEALQLLIY-LLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHK 164 (206)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCC
Confidence 99999988766788999999886 9999999999999999999999986 79999999999999999999
Q ss_pred CcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 389 LLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 389 ~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
+..+...+++ ..........++.||++||+||+.||...
T Consensus 165 ~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 203 (206)
T cd04376 165 QKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVS 203 (206)
T ss_pred CCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCC
Confidence 8543222111 12334455677889999999999999854
No 21
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.1e-38 Score=315.28 Aligned_cols=184 Identities=25% Similarity=0.407 Sum_probs=165.4
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC--C----CCCCCcchhhhhH
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--F----SPEEDAHIIADCV 302 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~----~~~~d~h~vAslL 302 (740)
||+||+.++.+ +..||.+|.+|++||+++|+++|||||++|+..+|++++..+|+|... + ....|+|+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999999865 567999999999999999999999999999999999999999998531 1 1245999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhh
Q 004638 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (740)
Q Consensus 303 K~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivF 381 (740)
|.|||+||+||||.++|+.|+.+.+..+ ..++..++.++. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLIN-DLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999998888 889999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 004638 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 382 aP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
||+|||++.. .+........++++||+||+.||
T Consensus 160 ~P~l~~~~~~---------------------~~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPD---------------------NAADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCcc---------------------chhhHHHHHHHHHHHHHHHHHhC
Confidence 9999998731 01233456789999999999998
No 22
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-37 Score=312.44 Aligned_cols=160 Identities=26% Similarity=0.485 Sum_probs=150.5
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CC-CCCCCcchhhhhHHHHHh
Q 004638 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EF-SPEEDAHIIADCVKYVIR 307 (740)
Q Consensus 230 FGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~-~~~~d~h~vAslLK~fLR 307 (740)
||+||..++..+..||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|.. .+ ..++++|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 9999999998888999999999999999999999999999999999999999999753 33 245799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhccccc
Q 004638 308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386 (740)
Q Consensus 308 eLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Ll 386 (740)
+||+||||+++|+.|+++.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELLK-KFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999998877 889999999886 9999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 004638 387 RPLL 390 (740)
Q Consensus 387 rp~~ 390 (740)
||+.
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 23
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.2e-38 Score=322.30 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=160.8
Q ss_pred ccccChhHhhhcC----------------CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC----CC
Q 004638 229 VIGRPILLALEDV----------------DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK----TE 288 (740)
Q Consensus 229 vFGvpL~~~~~~~----------------~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~----~~ 288 (740)
||||+|++.+... ..||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999887541 358999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCcchhhhhHHHHHhhCCCCCCChhhHHHHHHHHhc-----------------Cc-hHHHHHHHHHHHhcCChhHH
Q 004638 289 FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRT-----------------DR-GSRVSAMRTAILETFPEPNR 350 (740)
Q Consensus 289 ~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~-----------------~~-~~ri~~i~~lI~~~LP~~N~ 350 (740)
....+++|+||++||.|||+||+||||+++|+.|+.++.. .+ .+++..++.+|. +||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLIT-RLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHH-HCCHHHH
Confidence 2356799999999999999999999999999999987642 23 678899999886 9999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 351 KLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 351 ~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
.+|+||+.||++|++|++.||||+.|||+||||+||+++.. + | . .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~-------~--~---------~-~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDH-------E--M---------D-PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcc-------c--c---------C-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998731 0 0 0 11234567899999999
Q ss_pred ccccc
Q 004638 431 YDKIF 435 (740)
Q Consensus 431 ~~~IF 435 (740)
+++|.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99873
No 24
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=1.2e-37 Score=316.55 Aligned_cols=186 Identities=22% Similarity=0.325 Sum_probs=162.6
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhHHHHHh
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIR 307 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLR 307 (740)
||+||+.++.+ ++.||.+|.+|++||+++|+.+|||||++|+..++++++..|+.|.. .....+++|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999998876 67899999999999999999999999999999999999999999863 23456799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCC
Q 004638 308 ELPSSPVPASCCNALLEARRTD--------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRM 372 (740)
Q Consensus 308 eLPePLlp~~l~~~~i~~~~~~--------------~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkM 372 (740)
+||+||||+++|+.|+.+.+.. + ..++..++.+|. +||+.|+.+|+||+.||++|++|++.|+|
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLR-QLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999987531 1 356889999886 99999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 373 STSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 373 ta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
++.|||+||||+|||++... .++ .+.+.....++..||++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~-----~~~---------~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGD-----ADV---------SLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCC-----cch---------hHHHHHhhhhhHHHHHHHhhC
Confidence 99999999999999998421 000 133445667888999999986
No 25
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-37 Score=312.81 Aligned_cols=176 Identities=22% Similarity=0.401 Sum_probs=160.9
Q ss_pred ccccChhHhhhc------CCCCcHHHHHHHHHHHHhC-CccCCeeecCCCHHHHHHHHHHHhcCCC-CC---CCCCCcch
Q 004638 229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKT-EF---SPEEDAHI 297 (740)
Q Consensus 229 vFGvpL~~~~~~------~~~VP~~l~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~---~~~~d~h~ 297 (740)
|||+||+.+++. +..||.+|.+|++||+++| +.+|||||++|+...++.+++.++.|.. .+ ...+|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999988864 3469999999999999987 8999999999999999999999999852 22 23579999
Q ss_pred hhhhHHHHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCcc
Q 004638 298 IADCVKYVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTS 375 (740)
Q Consensus 298 vAslLK~fLReLPePLlp~~l~~~~i~~~~~~-~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~ 375 (740)
||++||.|||+||+||||.++|+.|+.+.+.. + .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVS-QLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988876 5 889999999886 99999999999999999999999999999999
Q ss_pred chhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 004638 376 AVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (740)
Q Consensus 376 NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~ 437 (740)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999875 3899999999999985
No 26
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.5e-37 Score=309.96 Aligned_cols=184 Identities=26% Similarity=0.367 Sum_probs=166.7
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhHHHHHhh
Q 004638 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRE 308 (740)
Q Consensus 230 FGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLRe 308 (740)
||+||+.++.++..||.+|.+|++||+.+|+++|||||++|+...++++++.+|.|.. .....+++|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 9999999988888899999999999999999999999999999999999999999842 334578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccC
Q 004638 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (740)
Q Consensus 309 LPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llr 387 (740)
||+||||+++|+.|+.+....+ .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVLE-QLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998887 889999999886 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 388 p~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
++... + ...+.....+...+|++||+.
T Consensus 160 ~~~~~-------------~---~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA-------------D---PLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC-------------C---HHHHHHHHHHHHHHHHHHhhC
Confidence 87321 0 124566777889999999974
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-37 Score=316.29 Aligned_cols=186 Identities=23% Similarity=0.355 Sum_probs=159.2
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCcchhhhhHHHHHh
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIR 307 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLR 307 (740)
||+||+.++.+ +++||.+|.+|++||+++|+.+|||||++|+..++++++..|+.|... ....+++|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999988866 568999999999999999999999999999999999999999998643 3456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-----------------------hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 004638 308 ELPSSPVPASCCNALLEARRTDR-----------------------GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVA 364 (740)
Q Consensus 308 eLPePLlp~~l~~~~i~~~~~~~-----------------------~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va 364 (740)
+||+||||+++|+.|+.+++... ..++.+++.+|. +||++||.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLR-QLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875210 123667888886 999999999999999999999
Q ss_pred hhhcccCCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 365 SSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 365 ~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
+|++.|+||+.|||+||||+||||+.... .+ + +........+..||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~-------~~----~---~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA-------TV----S---LSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc-------ch----h---HHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999973210 00 0 23344567788999999974
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=5.6e-37 Score=309.63 Aligned_cols=161 Identities=24% Similarity=0.358 Sum_probs=149.7
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC---CCCCCCcchhhhhHHHH
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---FSPEEDAHIIADCVKYV 305 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vAslLK~f 305 (740)
||+||+.++.+ +..||.+|.+|++||+++|+.+|||||++|+..+|+++++.||.|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 99999988876 446999999999999999999999999999999999999999997532 23568999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhccc
Q 004638 306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL 384 (740)
Q Consensus 306 LReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~ 384 (740)
||+||+||||+++|+.|+++....+ ..++.+++.++. +||+.|+.+|.||+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLL-SLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999998888 888999999886 99999999999999999999999999999999999999999
Q ss_pred ccCCCcC
Q 004638 385 LLRPLLA 391 (740)
Q Consensus 385 Llrp~~~ 391 (740)
|||++..
T Consensus 160 Llr~~~~ 166 (196)
T cd04387 160 LLRPSEK 166 (196)
T ss_pred cCCCCcc
Confidence 9999854
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=6e-37 Score=307.98 Aligned_cols=183 Identities=23% Similarity=0.394 Sum_probs=163.1
Q ss_pred CccccChhHhhhc---CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCcchhhhhHH
Q 004638 228 PVIGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVK 303 (740)
Q Consensus 228 ~vFGvpL~~~~~~---~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK 303 (740)
++||+||+.++++ ..+||.+|.+|++||+++|+.+|||||++|+...++++++.++.|... +..++|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 457999999999999999999999999999999999999999999743 445689999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhh
Q 004638 304 YVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (740)
Q Consensus 304 ~fLReLPePLlp~~l~~~~i~~~~~~-~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivF 381 (740)
.|||+||+||||+++|+.|+.+++.. . .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~-~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQ-QLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987655 3 778889999885 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 382 aP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
||+|||.+.. . ........+++|++.||+|
T Consensus 160 ~P~l~~~~~~----~---------------~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----V---------------EDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----c---------------ccHHHHHHHHHHHHHHhcC
Confidence 9999998731 1 1223456788999999987
No 30
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-36 Score=308.63 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=159.5
Q ss_pred cccChhHhhhc---CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC--CCCCcchhhhhH
Q 004638 230 IGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS--PEEDAHIIADCV 302 (740)
Q Consensus 230 FGvpL~~~~~~---~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~--~~~d~h~vAslL 302 (740)
||+||+.++.+ ...||.+|.+|++||+.+|+++|||||++|+..+++.+++.|+++.. .+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 99999999876 34699999999999999999999999999999999999999998742 222 234899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchh
Q 004638 303 KYVIRELPSSPVPASCCNALLEARRTDR----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (740)
Q Consensus 303 K~fLReLPePLlp~~l~~~~i~~~~~~~----~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 378 (740)
|.|||+||+||||+++|+.|+++..... ..++..++.+|. +||+.|+.+|+||+.||+.|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~-~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIID-CLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999986543 345667888775 99999999999999999999999999999999999
Q ss_pred hhhcccccCCCcCCccc-cccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 004638 379 ACMAPLLLRPLLAGECE-IETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY 431 (740)
Q Consensus 379 ivFaP~Llrp~~~~~~~-~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~ 431 (740)
+||||+||+++...... +.....|....+. .......++++||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVSTV-------DFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccchh-------hHHHHHHHHHHHHHhc
Confidence 99999999998643211 2212222222222 2335567899999865
No 31
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-36 Score=308.10 Aligned_cols=184 Identities=23% Similarity=0.344 Sum_probs=155.7
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CC-CCCCcchhhhhHHHHHh
Q 004638 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FS-PEEDAHIIADCVKYVIR 307 (740)
Q Consensus 230 FGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~-~~~d~h~vAslLK~fLR 307 (740)
||.||.+ ++++ +|.+||+||++ |+.+|||||++|+..++++|++.|++|... +. ..+++|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888853 2333 88899999998 999999999999999999999999999643 33 35799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhc------------Cc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCc
Q 004638 308 ELPSSPVPASCCNALLEARRT------------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (740)
Q Consensus 308 eLPePLlp~~l~~~~i~~~~~------------~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta 374 (740)
+||+||||.++|+.|+.+.+. .+ +.++..++.++. +||+.|+.+|+||+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLL-LLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 999999999999999887642 23 566888888775 9999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 375 ~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
.|||+||||+||||+... .. ........++.||++||+||+.||+..
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~---~~~~~~~~~~~iv~~lI~~~~~iF~~~ 199 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PE---DLHENAQKLNSIVTFMIKHSQKLFKAP 199 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HH---HHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999986211 11 111234567899999999999999843
No 32
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-36 Score=300.82 Aligned_cols=179 Identities=22% Similarity=0.383 Sum_probs=161.6
Q ss_pred ccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC---CCCCCCcchhhhhHHHHHh
Q 004638 231 GRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---FSPEEDAHIIADCVKYVIR 307 (740)
Q Consensus 231 GvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vAslLK~fLR 307 (740)
|.+|+.....+.+||.+|.+|+.||+.+|+++|||||++|+...++++++.|+.+... ....+|+|+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7788777777788999999999999999999999999999999999999999986422 2456799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhccccc
Q 004638 308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386 (740)
Q Consensus 308 eLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Ll 386 (740)
+||+||||+++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELIR-RLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999998888 889999999886 9999999999999999999999999999999999999999999
Q ss_pred CCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 004638 387 RPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY 431 (740)
Q Consensus 387 rp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~ 431 (740)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 1123457788999999998
No 33
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=354.24 Aligned_cols=336 Identities=17% Similarity=0.219 Sum_probs=243.4
Q ss_pred ceEEEeeeEee----ecC----CCCCCceeEEEEEeCCeEEEeccCCCCCCCCCc----------cceeecCCeeecCCC
Q 004638 83 AVFKSGPLFIS----SKG----IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGS----------EVNLTLGGIDLNNSG 144 (740)
Q Consensus 83 ~v~KeGyL~l~----kkg----~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~----------e~~i~L~~i~l~~s~ 144 (740)
...|+||||+. |+| ...+.|+.-|.+|.++.|+.|++.....+.... .-.+-+..|-+.-.
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~- 1000 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQ- 1000 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhh-
Confidence 36899999973 333 457889999999999999999987653221100 01111222211110
Q ss_pred ceeEecCCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHhcCCCCCCCCcc-------------cCc-------
Q 004638 145 SVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQ-------------NGI------- 204 (740)
Q Consensus 145 sv~~~~~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~aPs~~~~~~~-------------~~i------- 204 (740)
-....++..|.++.. +--.+.|+|++.++|-.|++.++...........|++. +++
T Consensus 1001 --ysetkrn~vfRLTt~--d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst 1076 (1973)
T KOG4407|consen 1001 --YSETKRNQVFRLTTN--DLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPST 1076 (1973)
T ss_pred --hhhhhhhhHHHhHHH--HHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCC
Confidence 001245566776643 33579999999999999999997654211111111110 000
Q ss_pred --------------ccccc-----------------hhhcccch-hhhccc------------------------CCCCC
Q 004638 205 --------------LKNDK-----------------AEAANGSV-EQLKEK------------------------PVKFP 228 (740)
Q Consensus 205 --------------~~~~~-----------------~~~~~~s~-~~~~~k------------------------~~~~~ 228 (740)
|.... .+...++. ..||+- ..+-+
T Consensus 1077 ~~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~ 1156 (1973)
T KOG4407|consen 1077 VPSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQP 1156 (1973)
T ss_pred CcchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCc
Confidence 00000 00000000 011111 11123
Q ss_pred ccccChhHhhh--cCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC------CCCCCCCcchhhh
Q 004638 229 VIGRPILLALE--DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT------EFSPEEDAHIIAD 300 (740)
Q Consensus 229 vFGvpL~~~~~--~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~------~~~~~~d~h~vAs 300 (740)
+|||+|.+.-- -++-||.+|..|+..+|.+||.+.|||||+|+...|..|++.+|.+.. ..+.+.|+++|.+
T Consensus 1157 ~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSS 1236 (1973)
T KOG4407|consen 1157 VLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSS 1236 (1973)
T ss_pred ccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHH
Confidence 89999976432 145599999999999999999999999999999999999999999832 1234679999999
Q ss_pred hHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhh
Q 004638 301 CVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (740)
Q Consensus 301 lLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAi 379 (740)
|||.|||.||+||||..+|..||++-+..+ -+|+..|+.||. +||.++|.+|++|+.||.+|+.|+++|||-+.||||
T Consensus 1237 LLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~-~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi 1315 (1973)
T KOG4407|consen 1237 LLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLR-KLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAI 1315 (1973)
T ss_pred HHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHHHhcccccccccccceeE
Confidence 999999999999999999999999999999 899999999886 999999999999999999999999999999999999
Q ss_pred hhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC
Q 004638 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSAS 441 (740)
Q Consensus 380 vFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~~~s 441 (740)
+|||+|+|++. + .|..+..++..+++||++||.+|+++|.+....
T Consensus 1316 ~FGPsiVRts~-------D----------nm~tmVthM~dQckIVEtLI~~~dwfF~esg~t 1360 (1973)
T KOG4407|consen 1316 MFGPSIVRTSD-------D----------NMATMVTHMSDQCKIVETLIHYNDWFFDESGTT 1360 (1973)
T ss_pred EeccceeccCC-------c----------cHHHHhhcchhhhhHHHHHHhhhhheeccCCCc
Confidence 99999999873 2 123445667789999999999999999975443
No 34
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=1.1e-35 Score=299.51 Aligned_cols=177 Identities=22% Similarity=0.331 Sum_probs=157.2
Q ss_pred CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCcchhhhhHHHHHhhCCCCCCChhhH
Q 004638 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPASCC 319 (740)
Q Consensus 241 ~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLReLPePLlp~~l~ 319 (740)
...||.+|.+|++||+++|+.+|||||++|+..+|+++++.|++|... .....|+|+||++||.|||+||+||||+++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 456999999999999999999999999999999999999999988633 3455699999999999999999999999999
Q ss_pred HHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCcccccc
Q 004638 320 NALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIET 398 (740)
Q Consensus 320 ~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~ 398 (740)
+.|+++.+..+ ..++..++.+|. +||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~------ 165 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAIS-ELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPN------ 165 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCC------
Confidence 99999999888 888999999886 9999999999999999999999 99999999999999999999986311
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 004638 399 DFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKI 434 (740)
Q Consensus 399 ~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~I 434 (740)
...+.+...+..++.+|+.||++-+..
T Consensus 166 ---------~~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 166 ---------PDPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ---------ccHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 011455666777889999999987653
No 35
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.1e-36 Score=299.25 Aligned_cols=178 Identities=22% Similarity=0.269 Sum_probs=153.5
Q ss_pred cccChhHhhhc------CCCCcHHHHHHHHHHHH-hCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhH
Q 004638 230 IGRPILLALED------VDGTPSFLEKAIRFIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCV 302 (740)
Q Consensus 230 FGvpL~~~~~~------~~~VP~~l~~~i~~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslL 302 (740)
||+||++++.+ +..||.+|..|+++|.+ +|+.+|||||++|+..+|++++..+|.|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 99999999854 23599999999999875 799999999999999999999999999976666677999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhh--cccCCCccchhhh
Q 004638 303 KYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSK--NQNRMSTSAVAAC 380 (740)
Q Consensus 303 K~fLReLPePLlp~~l~~~~i~~~~~~~~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s--~~NkMta~NLAiv 380 (740)
|.|||+||+||||+++|+.|+.+.. ....++.+|. +||+.|+.+|.||+.||+.|++++ +.||||+.|||+|
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~-----~~~~~~~li~-~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAiv 154 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASE-----DPDKAVEIVQ-KLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMV 154 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhc-----CHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence 9999999999999999999988642 2345667675 999999999999999999999765 7899999999999
Q ss_pred hcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 381 FaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
|||+|||++. +++ ......+.+...+|+.||+|
T Consensus 155 f~P~l~~~~~------~~~-----------~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 155 FAPNILRCTS------DDP-----------RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HccccCCCCC------CCH-----------HHHHHccHHHHHHHHHHhcC
Confidence 9999999863 121 23345566888999999986
No 36
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-35 Score=303.97 Aligned_cols=188 Identities=14% Similarity=0.251 Sum_probs=160.9
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhC--CccC----CeeecCCCHHHHHHHHHHHhcCCCCC-----CCCCCcch
Q 004638 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHG--VQVE----GILRQAAYVDDVHRRIREFEQGKTEF-----SPEEDAHI 297 (740)
Q Consensus 230 FGvpL~~~~~~-~~~VP~~l~~~i~~Le~~G--l~~E----GIFR~sG~~~~v~~L~~~ld~g~~~~-----~~~~d~h~ 297 (740)
|||||+.++.. +..||.+|.+|++||+.+| +..+ ||||++|+.+.+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 99999998876 4579999999999999975 4333 99999999999999999999985332 34679999
Q ss_pred hhhhHHHHHhhCCCCCCChhhHHHHHHHHhc------Cc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccc
Q 004638 298 IADCVKYVIRELPSSPVPASCCNALLEARRT------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQN 370 (740)
Q Consensus 298 vAslLK~fLReLPePLlp~~l~~~~i~~~~~------~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~N 370 (740)
||++||.|||+||+||||+++|+.|+++... .+ ++|+.+++.++. +||..|+.+|++|+.||.+|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~-~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLS-QLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 34 889999999886 999999999999999999999988666
Q ss_pred ---CCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 004638 371 ---RMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (740)
Q Consensus 371 ---kMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~ 437 (740)
+|++.|||+||||+|+||...... .....++..+|+.||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~-------------------~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLL-------------------TIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCccccc-------------------ccccHHHHHHHHHHHHhHHHhccc
Confidence 699999999999999998742110 012246678999999999999985
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-35 Score=301.10 Aligned_cols=169 Identities=23% Similarity=0.403 Sum_probs=150.2
Q ss_pred CCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHH-HhcC-----CCCCCC-CCCcchhhhhHHHHHhhCCCCCCC
Q 004638 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQG-----KTEFSP-EEDAHIIADCVKYVIRELPSSPVP 315 (740)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~-ld~g-----~~~~~~-~~d~h~vAslLK~fLReLPePLlp 315 (740)
..|.||.+|++||+++|+.+|||||++|+..+|++++.. ++.+ ..++.. .+|+|+||++||.|||+||+||||
T Consensus 27 ~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~ 106 (203)
T cd04374 27 IGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMT 106 (203)
T ss_pred ccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCC
Confidence 467799999999999999999999999999999999876 5654 223333 679999999999999999999999
Q ss_pred hhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCcc
Q 004638 316 ASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGEC 394 (740)
Q Consensus 316 ~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~ 394 (740)
+++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||++..
T Consensus 107 ~~~y~~~i~~~~~~~~~~ri~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~--- 182 (203)
T cd04374 107 YELHNDFINAAKSENLESRVNAIHSLVH-KLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEE--- 182 (203)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCc---
Confidence 999999999999888 889999999886 999999999999999999999999999999999999999999998731
Q ss_pred ccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 395 EIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 395 ~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
+ ++++......+.||++||+|
T Consensus 183 ---~------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 183 ---T------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred ---c------------HHHHHHhHHHHHHhhhHhcC
Confidence 1 23455677788999999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=4.6e-35 Score=295.08 Aligned_cols=171 Identities=20% Similarity=0.288 Sum_probs=146.8
Q ss_pred hhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhHHHHHhhCCCCCCCh
Q 004638 238 LEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRELPSSPVPA 316 (740)
Q Consensus 238 ~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fLReLPePLlp~ 316 (740)
+...+.+|.+|.+||++|+++|+++|||||++|+.. +.++++.|+.+. ......+|+|+||++||.|||+||+||||+
T Consensus 9 ~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLip~ 87 (200)
T cd04388 9 FSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVIPA 87 (200)
T ss_pred hCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccCCH
Confidence 333578999999999999999999999999999865 788999999863 233357899999999999999999999999
Q ss_pred hhHHHHHHHHh-cCc-hHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCc
Q 004638 317 SCCNALLEARR-TDR-GSRVSAMRTAIL-ETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGE 393 (740)
Q Consensus 317 ~l~~~~i~~~~-~~~-~~ri~~i~~lI~-~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~ 393 (740)
++|+.|+++++ ..+ .+++..++.+|. ..||+.|+.+|+|||.||++|++|+..|+||+.|||+||||+|||++...
T Consensus 88 ~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~~- 166 (200)
T cd04388 88 PVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPAS- 166 (200)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCccc-
Confidence 99999999875 344 788899998773 27999999999999999999999999999999999999999999997321
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 394 CEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 394 ~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
.....+...+|++||.+
T Consensus 167 --------------------~~~~~~~~~vvE~Li~~ 183 (200)
T cd04388 167 --------------------SDSPEFHIRIIEVLITS 183 (200)
T ss_pred --------------------ccchhhHHHHHHHHHHH
Confidence 01234677899999985
No 39
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-32 Score=305.57 Aligned_cols=316 Identities=22% Similarity=0.303 Sum_probs=233.1
Q ss_pred CCceeEEEEEeCCeEEEeccCCCCCCCC---CccceeecCCeeecCCCce--eEecCCceEEEEEecCCCCceEEEEecC
Q 004638 100 TSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLFPDGRDGRAFTLKAES 174 (740)
Q Consensus 100 ksWkKRwfVL~~~~L~yyKd~~~~~~~~---g~e~~i~L~~i~l~~s~sv--~~~~~Kk~~F~I~~~~~dgrty~fqAdS 174 (740)
..|...|..+.++.++||.+.+.+.... .+.-........+...... ..+..++ +.+......+..|+++..+
T Consensus 271 ~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n 348 (650)
T KOG1450|consen 271 TVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRK--NTLWLTTNRTSKVLNRSHN 348 (650)
T ss_pred cccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCcc--ceeeeeecCCceeeecCCC
Confidence 4599999999999999999876543221 0110111111111111000 1112233 3444444456789999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCC--CCccc---------------------------Ccccccch---------------
Q 004638 175 LEDLYDWKTALENALAQAPSTGS--ATGQN---------------------------GILKNDKA--------------- 210 (740)
Q Consensus 175 eeE~~~WI~AI~~ai~~aPs~~~--~~~~~---------------------------~i~~~~~~--------------- 210 (740)
+.....|..+....+...++++. ..|.. ++......
T Consensus 349 et~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~ 428 (650)
T KOG1450|consen 349 ETSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDP 428 (650)
T ss_pred CccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccch
Confidence 99999999999988753333211 11100 00000000
Q ss_pred -------hhcccchhhhccc--CCCCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHH
Q 004638 211 -------EAANGSVEQLKEK--PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIR 280 (740)
Q Consensus 211 -------~~~~~s~~~~~~k--~~~~~vFGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~ 280 (740)
.+..+-+...+++ +...+|||++|+.+|++ ++.||.||.+|+..|+..|++.+||||++|+...|++|+.
T Consensus 429 ~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~ 508 (650)
T KOG1450|consen 429 QKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLRE 508 (650)
T ss_pred HHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHH
Confidence 0001111113333 44589999999999876 5679999999999999999999999999999999999999
Q ss_pred HHhcCC-CCCC--CCCCcchhhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHH
Q 004638 281 EFEQGK-TEFS--PEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRI 356 (740)
Q Consensus 281 ~ld~g~-~~~~--~~~d~h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~L 356 (740)
.+|... ..+. .+.|+|+|+++||.|||+||+||+|..++..|..+..... ..+...++.+|. .||.+|+.||+||
T Consensus 509 ~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~-~lP~~n~~Tlr~l 587 (650)
T KOG1450|consen 509 QSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIG-LLPDANYQTLRYL 587 (650)
T ss_pred hcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHh-hCCCcchhHHHHH
Confidence 999643 2332 3479999999999999999999999999999999999988 899999999996 9999999999999
Q ss_pred HHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 004638 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 357 l~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
+.||++|..|++.|||+.+||||||||+|+.+... . -..+..+..+.+||+.||+++..+|+
T Consensus 588 v~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~------~------------~~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 588 VRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQE------T------------SSEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHHhccccccccccceEEEecccccccccc------c------------cchhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999997521 1 01245667888999999999999997
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=3.6e-31 Score=261.52 Aligned_cols=169 Identities=29% Similarity=0.476 Sum_probs=154.3
Q ss_pred CCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC--CCCCCcchhhhhHHHHHhhCCCCCCChhhHH
Q 004638 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSSPVPASCCN 320 (740)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vAslLK~fLReLPePLlp~~l~~ 320 (740)
.||.+|.+|+.||+++|+++|||||++|+..++++++..++.|.... ...+|+|++|++||.|||+||+||||.++|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999986543 5688999999999999999999999999999
Q ss_pred HHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCccccccc
Q 004638 321 ALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399 (740)
Q Consensus 321 ~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~ 399 (740)
.|+.+....+ .+++..++.++. +||+.|+.+|.+|+.||+.|+.+++.|+|++.|||+||||+|+|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~------- 153 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELIS-LLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE------- 153 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence 9999998777 889999999886 9999999999999999999999999999999999999999999997321
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 400 ~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
........+...+|++||+|
T Consensus 154 -----------~~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 154 -----------VASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhc
Confidence 11345667889999999987
No 41
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=1.6e-31 Score=301.20 Aligned_cols=266 Identities=21% Similarity=0.346 Sum_probs=216.0
Q ss_pred CCCCceeEEEEEeCCeEEEeccCCCCCCCCCcccee-ecCCeeecCCCceeEecCCceEEEEEecCCCCceEEEEecChh
Q 004638 98 GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL-TLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLE 176 (740)
Q Consensus 98 ~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i-~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dgrty~fqAdSee 176 (740)
..-.|++-||.+.|..|.+.--.... .+.-+.+ .+..+.+.. ......|+-.|.++.+ |||.|++..+.-
T Consensus 627 ~~~~~r~gwfsl~gssl~~~~~~~~v---e~d~~hlrrlqElsi~s---~~~n~~K~~~l~lve~---grTLYI~g~~rl 697 (1186)
T KOG1117|consen 627 ALDQARKGWFSLDGSSLHFCLQMQPV---EEDRMHLRRLQELSISS---MVQNGEKLDVLVLVEK---GRTLYIQGETRL 697 (1186)
T ss_pred hhhhccccceecCCCeeEEecCCCcC---chhHHHHHHHHHHhhhh---ccCCcccccceEEEee---ccEEEEecCCcc
Confidence 35679999999999999888753211 1110110 111111111 1123357778888877 899999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCcccCcccccchhhcccchhhhcccCCCCCccccChhHhhhcCCCCcHHHHHHHHHHH
Q 004638 177 DLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIE 256 (740)
Q Consensus 177 E~~~WI~AI~~ai~~aPs~~~~~~~~~i~~~~~~~~~~~s~~~~~~k~~~~~vFGvpL~~~~~~~~~VP~~l~~~i~~Le 256 (740)
+...|..||..+.+. + |.-|.+..-..+.||.||..||.|+.
T Consensus 698 dft~W~~AIekaa~~-~-------------------------------------gt~LqeqqLs~~dIPvIVd~CI~FVT 739 (1186)
T KOG1117|consen 698 DFTVWHTAIEKAAGT-D-------------------------------------GTALQEQQLSKNDIPVIVDSCIAFVT 739 (1186)
T ss_pred hHHHHHHHHHHHhcC-C-------------------------------------cchhhhhhccCCCCcEehHHHHHHHH
Confidence 999999999998731 1 11223333345679999999999999
Q ss_pred HhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCCcchhhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hH
Q 004638 257 EHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GS 332 (740)
Q Consensus 257 ~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ 332 (740)
++||..|||||.+|...++.+|...|-++...+ ..+.-+.+|+++||+|||+|++||+|.++|..|++++...+ ++
T Consensus 740 qyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~E 819 (1186)
T KOG1117|consen 740 QYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKE 819 (1186)
T ss_pred HhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHH
Confidence 999999999999999999999999998875433 34668999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHH
Q 004638 333 RVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQ 412 (740)
Q Consensus 333 ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~ 412 (740)
++..+..+|. .||..||.+|+.||.||++|..+++.|+|+++|||.||||+||...-
T Consensus 820 r~~rY~~lI~-~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg---------------------- 876 (1186)
T KOG1117|consen 820 RIKRYGALIR-SLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG---------------------- 876 (1186)
T ss_pred HHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC----------------------
Confidence 9999999997 99999999999999999999999999999999999999999998641
Q ss_pred HHHHHHHHHHHHHHHHhhcccccC
Q 004638 413 AAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 413 a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
+..+..+|++-||.+|..||.
T Consensus 877 ---qdehevnVledLingYvvVF~ 897 (1186)
T KOG1117|consen 877 ---QDEHEVNVLEDLINGYVVVFE 897 (1186)
T ss_pred ---CchhhhhHHHHHhcCceEEEE
Confidence 112677899999999999998
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.4e-30 Score=287.77 Aligned_cols=199 Identities=21% Similarity=0.253 Sum_probs=167.5
Q ss_pred CCCCCccccChhHhhhc----CCCCcHHHHHHHH-HHHH-hCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcch
Q 004638 224 PVKFPVIGRPILLALED----VDGTPSFLEKAIR-FIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHI 297 (740)
Q Consensus 224 ~~~~~vFGvpL~~~~~~----~~~VP~~l~~~i~-~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~ 297 (740)
.....||||++..+.+. ++.||.++..+.. +|+. .|++.|||||+.|...+++.+++.||.|........|||+
T Consensus 141 s~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~ 220 (577)
T KOG4270|consen 141 SASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHC 220 (577)
T ss_pred cchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHH
Confidence 33467999999877654 3347999988888 6666 7899999999999999999999999999644333789999
Q ss_pred hhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccc
Q 004638 298 IADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSA 376 (740)
Q Consensus 298 vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~N 376 (740)
||++||.|||+||+|+|++.+|..|+.++...+ ++++..++.++. +||+.|+.+|+|+|+||+.|+++++.||||++|
T Consensus 221 ~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~-~LPp~n~slL~yli~flA~v~~~~~vNKMs~~N 299 (577)
T KOG4270|consen 221 LAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQ-KLPPTNYSLLRYLIRFLADVVEKEHVNKMSARN 299 (577)
T ss_pred HHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHHHHhhhcccchhh
Confidence 999999999999999999999999999988888 899999999775 999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 377 VAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 377 LAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
|||||||+|+|+..+ ...++.+......+..+|+.+|++++..|+..
T Consensus 300 lAiV~gPNl~~~~~p---------------~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~ 346 (577)
T KOG4270|consen 300 LAIVFGPNLLWMKDP---------------LTALMYAVQVSNFLKGLIEKTLEERDTSFPGE 346 (577)
T ss_pred ceeEecCCccccCCh---------------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 999999999998731 11234444445555666667777777777644
No 43
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-30 Score=285.61 Aligned_cols=206 Identities=21% Similarity=0.321 Sum_probs=171.6
Q ss_pred CCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCCCCCCcchhhhh
Q 004638 226 KFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFSPEEDAHIIADC 301 (740)
Q Consensus 226 ~~~vFGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~d~h~vAsl 301 (740)
.+.||||||..++++ +-.+|.+|.+++.||+++|++++||||++|..++|+.|++.++..-. ...+....|++|.+
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 478999999988887 44599999999999999999999999999999999999999887421 23456689999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhh
Q 004638 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (740)
Q Consensus 302 LK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAiv 380 (740)
||+|||+||+||||.++.+.|+.++.... .+++.+++.+|+ .||.+||.+|+.|+.||.+|+.+.+.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 99999999999999999999999999999 999999999998 9999999999999999999999999999999999999
Q ss_pred hcccccCCCcCCcc---cc-ccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 004638 381 MAPLLLRPLLAGEC---EI-ETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 381 FaP~Llrp~~~~~~---~~-e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
|||+||.......- .. ......+-.+.. ....+.-+.+++..||.++..+|.
T Consensus 456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~~k----el~~a~aaa~~l~~mI~y~k~Lf~ 511 (674)
T KOG2200|consen 456 MAPSLFHLNALKLDSSPRVRQKKSETGKPDQK----ELNEALAAAQGLAHMIKYQKLLFT 511 (674)
T ss_pred hcchHHhhccCCCCCCccccccccccCCCchH----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999985432110 00 000001111111 123344567799999999999998
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.97 E-value=3.6e-30 Score=264.81 Aligned_cols=142 Identities=17% Similarity=0.313 Sum_probs=128.4
Q ss_pred CCcHHHHHHHHHHHHhCCccCCeeecCCCHHH----HHHHHHHHhcCCCCCCCCCCcchhhhhHHHHHhhCCCCCCChhh
Q 004638 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDD----VHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASC 318 (740)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~----v~~L~~~ld~g~~~~~~~~d~h~vAslLK~fLReLPePLlp~~l 318 (740)
.||.+|.+|++||+++|+.+|||||++|+... ++++++.+|.|.... ...++|+||++||.|||+||+||||+++
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~ 127 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL 127 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence 48999999999999999999999999999999 999999999986443 6789999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCc
Q 004638 319 CNALLEARRTDRGSRVSAMRTAILE-TFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL 390 (740)
Q Consensus 319 ~~~~i~~~~~~~~~ri~~i~~lI~~-~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~ 390 (740)
|..|+++... +. ..++.+| + +||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus 128 y~~~~~~~~~-~~---~~~~~ll-~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 128 YERLLEAVAN-NE---EDKRQVI-RISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHhcC-cH---HHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 9999998721 12 2344544 5 89999999999999999999999999999999999999999999984
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=2e-29 Score=246.39 Aligned_cols=167 Identities=26% Similarity=0.489 Sum_probs=151.7
Q ss_pred cHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCcchhhhhHHHHHhhCCCCCCChhhHHHHH
Q 004638 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALL 323 (740)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~i 323 (740)
|.+|..|++||+++|+.++||||++|+..++.+++..++.|... ....+|+|++|++||.|||+||+||||.++|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999755 55688999999999999999999999999999999
Q ss_pred HHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCcccccccccc
Q 004638 324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV 402 (740)
Q Consensus 324 ~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~ 402 (740)
.+....+ ..++..++.++. +||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|++++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~-~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELLK-SLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9998878 889999999886 9999999999999999999999999999999999999999999987321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 403 GGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 403 ~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
+........+..+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 12234556788899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=5.3e-30 Score=290.54 Aligned_cols=186 Identities=22% Similarity=0.378 Sum_probs=163.4
Q ss_pred CCCCCccccChhHhh----h-cCCCCcHHHHHHHHHHH-HhCCccCCeeecCCCHHHHHHHHHHHhcC-CCCC---CCCC
Q 004638 224 PVKFPVIGRPILLAL----E-DVDGTPSFLEKAIRFIE-EHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEF---SPEE 293 (740)
Q Consensus 224 ~~~~~vFGvpL~~~~----~-~~~~VP~~l~~~i~~Le-~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~---~~~~ 293 (740)
..++.|||.||-..+ . +..++|++|.+|++||+ .+|+..|||||++|++..|+.|++.||.+ +.++ ..+.
T Consensus 894 ~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~ 973 (1112)
T KOG4269|consen 894 VKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEM 973 (1112)
T ss_pred ceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccc
Confidence 345899997664332 2 24569999999999999 59999999999999999999999999998 3322 3578
Q ss_pred CcchhhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCC
Q 004638 294 DAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRM 372 (740)
Q Consensus 294 d~h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkM 372 (740)
|||+|||+||+|||+||+|||+.++|..|.......+ ..+...+..+|. .||++|+.++.+|+.||++|+.++.+|||
T Consensus 974 dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~-slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen 974 DVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLIS-SLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred cHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHH-hCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999888 888889999886 89999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC
Q 004638 373 STSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASP 442 (740)
Q Consensus 373 ta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~~~s~ 442 (740)
+++||++||+|+|.+|. .+...||-||+.||.+...-.
T Consensus 1053 nlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~~q~ 1090 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVMRQV 1090 (1112)
T ss_pred cccceeeeecccccCcH--------------------------------HhhhhhccchhhhhccchHHH
Confidence 99999999999999985 246678888999999764443
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=1e-28 Score=238.06 Aligned_cols=144 Identities=25% Similarity=0.515 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCcchhhhhHHHHHhhCCCCCCChhhHHHH
Q 004638 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322 (740)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~ 322 (740)
|.+|..|++||+++|+.++||||++|+..++++++..++.|... ....+|+|+||++||.||++||+||||.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999765 6678999999999999999999999999999999
Q ss_pred HHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCC
Q 004638 323 LEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (740)
Q Consensus 323 i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~ 389 (740)
+.+.+..+ .+++..++.++. +||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQ-SLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhhh-ccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888877 889999999886 9999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=3.6e-28 Score=259.39 Aligned_cols=196 Identities=22% Similarity=0.356 Sum_probs=172.9
Q ss_pred CCCCCccccChhHhhhc---CCCCcHHHHHHHHHHHHhC-CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCC-CCcchh
Q 004638 224 PVKFPVIGRPILLALED---VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPE-EDAHII 298 (740)
Q Consensus 224 ~~~~~vFGvpL~~~~~~---~~~VP~~l~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~-~d~h~v 298 (740)
+.++..||+||..+.+. +..||.+|..|+.+|..+| +.+|||||.+++.+.+.++.+.+|+|..+..+. -++|..
T Consensus 248 pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~~ 327 (467)
T KOG4406|consen 248 PLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHAP 327 (467)
T ss_pred CCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccchhh
Confidence 78899999999877654 5679999999999999999 999999999999999999999999997544434 459999
Q ss_pred hhhHHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchh
Q 004638 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (740)
Q Consensus 299 AslLK~fLReLPePLlp~~l~~~~i~~~~~~~~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 378 (740)
|.+||.|||+||+||++.++|..+......+...+...+.++|..+||+.|+.++++++.||.+|+.|+..|+||+.|||
T Consensus 328 avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa 407 (467)
T KOG4406|consen 328 AVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLA 407 (467)
T ss_pred HHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccce
Confidence 99999999999999999999999888776666888999999998779999999999999999999999999999999999
Q ss_pred hhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 379 ivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
+||||+|+|+.... . .....+.++.++++||+||..+|...
T Consensus 408 ~vfGpnl~w~~~~s---------------~----tl~q~npin~F~~~li~~~~~~f~~~ 448 (467)
T KOG4406|consen 408 VVFGPNLLWAQDES---------------L----TLKQINPINKFTKFLIEHYKKLFTTP 448 (467)
T ss_pred eeeccccccccccc---------------c----cHHHhccHHHHHHHHHHhhhhccCCC
Confidence 99999999987311 1 12234567889999999999999854
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=1.4e-26 Score=252.46 Aligned_cols=182 Identities=20% Similarity=0.393 Sum_probs=157.6
Q ss_pred CcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-----CCCCCCCCcchhhhhHHHHHhhCCCCCCChhh
Q 004638 244 TPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-----TEFSPEEDAHIIADCVKYVIRELPSSPVPASC 318 (740)
Q Consensus 244 VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-----~~~~~~~d~h~vAslLK~fLReLPePLlp~~l 318 (740)
||.+|.+|++||.++|+.+.||||+.|+..+|++|.+.|+.+. ....+.+++|+||++||.|||+||+||||.++
T Consensus 94 IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~L 173 (412)
T KOG2710|consen 94 IPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLEL 173 (412)
T ss_pred CcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHHH
Confidence 8999999999999999999999999999999999999999982 34456789999999999999999999999999
Q ss_pred HHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhccc-----------CCCccchhhhhccccc
Q 004638 319 CNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQN-----------RMSTSAVAACMAPLLL 386 (740)
Q Consensus 319 ~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~N-----------kMta~NLAivFaP~Ll 386 (740)
|+.|+..++... .+++..++.++. .||++|+.+|.+|+.||+-|+.|++.| +|++.|||+||+|+|+
T Consensus 174 Y~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL 252 (412)
T KOG2710|consen 174 YESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNIL 252 (412)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchhh
Confidence 999999999999 599999999887 999999999999999999999999999 9999999999999999
Q ss_pred CCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 004638 387 RPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 387 rp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
...... .+.+++.+ .........+..++++||+||+.+|.
T Consensus 253 ~k~~~~----~~~~s~~~------~~~~s~~~~i~~~~~~~~~N~e~~f~ 292 (412)
T KOG2710|consen 253 YKLKGS----HKELSVTG------VANESESEAIVNFAQMMIENLEALFQ 292 (412)
T ss_pred hcccCC----Cccccccc------ccchhhHHHHHHHHHHhhhhHHHhhc
Confidence 953200 11111111 11112334567789999999999999
No 50
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-24 Score=262.92 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=150.0
Q ss_pred ccccChhHhhh-cCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhHHHHH
Q 004638 229 VIGRPILLALE-DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVI 306 (740)
Q Consensus 229 vFGvpL~~~~~-~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vAslLK~fL 306 (740)
+||+.|..++. ....||.++.+|+.+|+.+|+.++||||++|...+++.|...|+.|. .+.....++|+|+++||+||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999988876 56789999999999999999999999999999999999999999986 45566889999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCc-h------HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhh
Q 004638 307 RELPSSPVPASCCNALLEARRTDR-G------SRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (740)
Q Consensus 307 ReLPePLlp~~l~~~~i~~~~~~~-~------~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAi 379 (740)
|+||+|||++.+|+.|+.+.+... . +++..++.++. .||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLE-QLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHHH-hcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 999999999999999999999843 3 48999999886 999999999999999999999999999999999999
Q ss_pred hhcccccCCCc
Q 004638 380 CMAPLLLRPLL 390 (740)
Q Consensus 380 vFaP~Llrp~~ 390 (740)
||||+|||++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 51
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.91 E-value=4.7e-25 Score=245.56 Aligned_cols=238 Identities=17% Similarity=0.218 Sum_probs=209.5
Q ss_pred CCCCCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhHH
Q 004638 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303 (740)
Q Consensus 224 ~~~~~vFGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK 303 (740)
+.++.+||.||..+|.+.+ +|..+..++-+|...|.-++||||..++...+++|++.++.|..+-.+...++++|.++|
T Consensus 77 ~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~k 155 (741)
T KOG4724|consen 77 TADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVDK 155 (741)
T ss_pred CCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhhh
Confidence 4568899999999988776 999999999999999999999999999999999999999999877777789999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhc
Q 004638 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (740)
Q Consensus 304 ~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFa 382 (740)
.|||.+|.-+|...+|..|+-+....+ ++++.+|+++. .+||..|..+|+||+..| .|..++.+|.|+..|||+|++
T Consensus 156 dflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~ 233 (741)
T KOG4724|consen 156 DFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVN 233 (741)
T ss_pred chhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhc
Confidence 999999999999999999999998888 99999999977 599999999999999999 999999999999999999999
Q ss_pred ccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcccccccccCCCCCCCCCCc
Q 004638 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDD 462 (740)
Q Consensus 383 P~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~~~s~~~l~~ds~~~~~~se~s~d~ 462 (740)
|++++++.....+.+..++ +++.-+++|||+||-.||+++.... |+.+.......|+.+|-
T Consensus 234 p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd~ 294 (741)
T KOG4724|consen 234 PIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSDL 294 (741)
T ss_pred chhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhhh
Confidence 9999998765555555444 2445579999999999999875544 66666666666778887
Q ss_pred cCcCCCCCCCCCCCCCCCCCC
Q 004638 463 DESYEDDDQDGATPESDAYTD 483 (740)
Q Consensus 463 ~~~~~d~~~~~~~~e~~~~~d 483 (740)
+....|+.||+.+++.+.+.|
T Consensus 295 s~~q~Ds~yds~~~~~~~~~~ 315 (741)
T KOG4724|consen 295 SKGQVDSHYDSTHVLASILKE 315 (741)
T ss_pred ccccccccccccchhhhhhhh
Confidence 777779999999988776554
No 52
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=226.73 Aligned_cols=172 Identities=22% Similarity=0.357 Sum_probs=149.4
Q ss_pred CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhHHHHHhhCCCCCCChhhHH
Q 004638 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCCN 320 (740)
Q Consensus 242 ~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vAslLK~fLReLPePLlp~~l~~ 320 (740)
..||.+|..|+..||.+||.++||||++|...++++|+++|-+|+. ......|+|+||++||.|||+|.+||||+.+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 4599999999999999999999999999999999999999999985 345678999999999999999999999999999
Q ss_pred HHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCccccccc
Q 004638 321 ALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399 (740)
Q Consensus 321 ~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~ 399 (740)
+|++++...+ ..-+.++.+.|. .||..||.+|.|||-|+++||+ +..|+|+..|||.+|||+++.-+.++
T Consensus 440 df~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~------- 510 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPN------- 510 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCC-------
Confidence 9999999988 666777777787 8999999999999999999888 88999999999999999999855321
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (740)
Q Consensus 400 ~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen 430 (740)
+....+...+.-+.++|+.|++-
T Consensus 511 --------pd~~~~l~dv~~q~rvmkaLlel 533 (604)
T KOG3564|consen 511 --------PDQVTMLQDVKTQPRVMKALLEL 533 (604)
T ss_pred --------ccHhHHHHhhhhhHHHHHHHHhC
Confidence 11133445566677888888763
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.77 E-value=4.6e-19 Score=203.35 Aligned_cols=158 Identities=23% Similarity=0.400 Sum_probs=145.9
Q ss_pred CCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC-CCCCC-CCCCcchhhhhHHH
Q 004638 227 FPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFS-PEEDAHIIADCVKY 304 (740)
Q Consensus 227 ~~vFGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~~-~~~d~h~vAslLK~ 304 (740)
...||.||..+......||.++.+|++||+..|+.+|||||++|+......++.+|.+. +.++. -+..+|++|+.+|.
T Consensus 915 s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlks 994 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKS 994 (1100)
T ss_pred hhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchh
Confidence 56899999888777778999999999999999999999999999999999999998773 33322 35679999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcc
Q 004638 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (740)
Q Consensus 305 fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP 383 (740)
||..||+||+|+.++..|.+++++.+ ..++..++..+. .||+.|+.+++|++.||.+|+....+|.||..||.|||+|
T Consensus 995 ffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a-~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~ 1073 (1100)
T KOG4271|consen 995 FFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASA-KLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPT 1073 (1100)
T ss_pred hhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhh-hcCchHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 99999999999999999999999999 899999999886 9999999999999999999999999999999999999999
Q ss_pred cc
Q 004638 384 LL 385 (740)
Q Consensus 384 ~L 385 (740)
.|
T Consensus 1074 ~~ 1075 (1100)
T KOG4271|consen 1074 LL 1075 (1100)
T ss_pred hH
Confidence 88
No 54
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.74 E-value=8.7e-18 Score=174.09 Aligned_cols=165 Identities=22% Similarity=0.271 Sum_probs=140.2
Q ss_pred CCCCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCC----CCCCcchh
Q 004638 224 PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS----PEEDAHII 298 (740)
Q Consensus 224 ~~~~~vFGvpL~~~~~~-~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~----~~~d~h~v 298 (740)
|.-..|||++|+.++++ ...-|+++.+|++.|+++|++.-|+|+++|++.+-+.|+..|+.....+. ..-|.++|
T Consensus 179 PrlrgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvI 258 (442)
T KOG1452|consen 179 PRLRGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVI 258 (442)
T ss_pred cccccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCccee
Confidence 33456999999998876 45678999999999999999999999999999999999999988643332 23588999
Q ss_pred hhhHHHHHhhCCCCCCChhhHHHHHHHHhc--Cc--hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCc
Q 004638 299 ADCVKYVIRELPSSPVPASCCNALLEARRT--DR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (740)
Q Consensus 299 AslLK~fLReLPePLlp~~l~~~~i~~~~~--~~--~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta 374 (740)
++++|.||||||||||+..+|...++++.. ++ ..-...+-.+| .-||..++.+|..++.||..|..++..|+||+
T Consensus 259 tg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~ii-dcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~ 337 (442)
T KOG1452|consen 259 TGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAII-DCLERELSKQLNVCLDHLSTVLCSSPHNGLTP 337 (442)
T ss_pred ecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHH-HHHHHHhhhhHhHHHhhhhHheecCCcCCcCH
Confidence 999999999999999999999988888643 22 33344455545 48999999999999999999999999999999
Q ss_pred cchhhhhcccccCCC
Q 004638 375 SAVAACMAPLLLRPL 389 (740)
Q Consensus 375 ~NLAivFaP~Llrp~ 389 (740)
..||.||||.||-..
T Consensus 338 ~~Ls~i~~P~L~~~~ 352 (442)
T KOG1452|consen 338 TRLSLIFAPLLFFCL 352 (442)
T ss_pred HHHHHHhhhhHHHhh
Confidence 999999999998754
No 55
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.64 E-value=1.2e-15 Score=155.09 Aligned_cols=181 Identities=14% Similarity=0.221 Sum_probs=142.7
Q ss_pred CccccChhHhhhc-CCCCcHHHHHHH--HHHHHhCCcc--CCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCcc----
Q 004638 228 PVIGRPILLALED-VDGTPSFLEKAI--RFIEEHGVQV--EGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDAH---- 296 (740)
Q Consensus 228 ~vFGvpL~~~~~~-~~~VP~~l~~~i--~~Le~~Gl~~--EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~h---- 296 (740)
.+||+|+.+-+.+ +...|..+.... +++..+-++. .|+||.++...-+...++.++..... .......+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899988655444 445677776555 5555555554 79999999999999999988876322 11111122
Q ss_pred -------hhhhhHHHHHhhCCCCCCChhhHHHHHHHHh---cCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHh
Q 004638 297 -------IIADCVKYVIRELPSSPVPASCCNALLEARR---TDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVAS 365 (740)
Q Consensus 297 -------~vAslLK~fLReLPePLlp~~l~~~~i~~~~---~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~ 365 (740)
+|+.+++.||++||+||+|..+|+.|+.++. ... +..+++++.++. .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999988886 333 788999999888 9999999999999999999999
Q ss_pred hh-------cccCCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 004638 366 SK-------NQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 366 ~s-------~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+..||.
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifk 229 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFK 229 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhc
Confidence 94 26677 899999999999872 00 13567899999999999997
No 56
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.63 E-value=1.6e-15 Score=138.15 Aligned_cols=96 Identities=24% Similarity=0.437 Sum_probs=65.8
Q ss_pred EEeeeEeeecCCC-CCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCC----eeecCCCceeEecCCceEEEEEe
Q 004638 86 KSGPLFISSKGIG-WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG----IDLNNSGSVVVKADKKLLTVLFP 160 (740)
Q Consensus 86 KeGyL~l~kkg~~-~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~----i~l~~s~sv~~~~~Kk~~F~I~~ 160 (740)
|+||| .|+|+. .++|++|||||+++.|+||+++.+..+.+ .+.|.. +.+.............++|.|..
T Consensus 1 KeG~L--~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G----~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t 74 (103)
T cd01251 1 KEGFM--EKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKG----EVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVT 74 (103)
T ss_pred CceeE--EecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCc----EEEeeccccceeEeccCCccccccccceEEEEe
Confidence 68955 455543 58999999999999999999987664322 122322 22211100001112334888776
Q ss_pred cCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 161 DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 161 ~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
. +|+|+|+|+|++|+.+||+||+.++.
T Consensus 75 ~---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 75 P---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred C---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 5 79999999999999999999999984
No 57
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.62 E-value=2.9e-15 Score=135.74 Aligned_cols=97 Identities=20% Similarity=0.302 Sum_probs=67.9
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
|+|+|||++ +++..++|++|||||+++.|+||+++++..+. ..+.|..|.+...........+.+||.|...
T Consensus 2 v~k~G~L~K--kg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~-- 73 (100)
T cd01233 2 VSKKGYLNF--PEETNSGWTRRFVVVRRPYLHIYRSDKDPVER----GVINLSTARVEHSEDQAAMVKGPNTFAVCTK-- 73 (100)
T ss_pred cceeEEEEe--eCCCCCCcEEEEEEEECCEEEEEccCCCccEe----eEEEecccEEEEccchhhhcCCCcEEEEECC--
Confidence 789996654 45566999999999999999999998764221 1233333322211100000125788988654
Q ss_pred CCceEEEEecChhhHHHHHHHHHHHH
Q 004638 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 164 dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.|+|+|+|+|++|+.+||.||+..+
T Consensus 74 -~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 74 -HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred -CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 6999999999999999999998765
No 58
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.58 E-value=8.1e-15 Score=131.65 Aligned_cols=90 Identities=23% Similarity=0.365 Sum_probs=66.1
Q ss_pred EeeeEeeecCCCCCCceeEEEEEeC--CeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCC
Q 004638 87 SGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (740)
Q Consensus 87 eGyL~l~kkg~~~ksWkKRwfVL~~--~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~d 164 (740)
+|||.+++.++..++|++|||||++ ..|+||+++.+..| ++.|.|..+..+.....++++|.|.+.
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p---------~G~I~L~~~~~~~~~~~~~~~F~i~t~--- 69 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKP---------LGRVDLSGAAFTYDPREEKGRFEIHSN--- 69 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccc---------cceEECCccEEEcCCCCCCCEEEEEcC---
Confidence 6988877654458999999999984 47999999876532 333444432221112234678888764
Q ss_pred CceEEEEecChhhHHHHHHHHHHH
Q 004638 165 GRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 165 grty~fqAdSeeE~~~WI~AI~~a 188 (740)
+|+|+|+|+|++||..||+||+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999875
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.57 E-value=9.3e-15 Score=132.21 Aligned_cols=91 Identities=25% Similarity=0.368 Sum_probs=68.9
Q ss_pred EEeeeEeeecCC---CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEec------CCceEE
Q 004638 86 KSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA------DKKLLT 156 (740)
Q Consensus 86 KeGyL~l~kkg~---~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~------~Kk~~F 156 (740)
.+| |+.++|+ ..|+|++|||+|+++.|+|||+.....+. .+.|+|+.+.+|.... .+.+||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~--------~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPD--------DCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCC--------CceEEcccceEEeeccccccccccCcEE
Confidence 479 6677777 78999999999999999999987654221 2345555554442222 224899
Q ss_pred EEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 157 ~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.|... .|+|+|+|+|++++++||++|+.|+
T Consensus 72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 98765 6999999999999999999998763
No 60
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.57 E-value=1.2e-14 Score=146.33 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=122.6
Q ss_pred cHHHHHHHHHHHHhCCccCCe---eecCCCHHHHHHHHHH-HhcCC--CCC-------CCCCCcchhhhhHHHHHhhCCC
Q 004638 245 PSFLEKAIRFIEEHGVQVEGI---LRQAAYVDDVHRRIRE-FEQGK--TEF-------SPEEDAHIIADCVKYVIRELPS 311 (740)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGI---FR~sG~~~~v~~L~~~-ld~g~--~~~-------~~~~d~h~vAslLK~fLReLPe 311 (740)
-.+|..|.+.|+.+|+++++| ||..++...++.++.. |+.+. ... ....|+|+|+++||.|||.||.
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 347899999999999999999 9999999999998665 56542 111 1246999999999999999999
Q ss_pred CCCCh-hhHHHHHHHHhcCchHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCC
Q 004638 312 SPVPA-SCCNALLEARRTDRGSRVSAMRTAILETF--PEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388 (740)
Q Consensus 312 PLlp~-~l~~~~i~~~~~~~~~ri~~i~~lI~~~L--P~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp 388 (740)
++|+. +.|..|...-+..+ ....+++.+|. ++ |+.|..+|..++.+|..|+.|+..|+|+..+|+.+|||.+|..
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~-~p~~aF~~~l~-~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~ 164 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSN-YPADAFLDLLP-QCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGK 164 (198)
T ss_pred CccCCHHHHHHHHHHHHhcC-CcHHHHHHHHh-hccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCC
Confidence 99999 99999999654443 22347888776 55 8889999999999999999999999999999999999999998
Q ss_pred Cc
Q 004638 389 LL 390 (740)
Q Consensus 389 ~~ 390 (740)
+.
T Consensus 165 ~~ 166 (198)
T cd04401 165 PT 166 (198)
T ss_pred CC
Confidence 74
No 61
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.57 E-value=1.2e-14 Score=130.16 Aligned_cols=93 Identities=27% Similarity=0.432 Sum_probs=69.4
Q ss_pred EEeeeEeeecC-C-CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 86 KSGPLFISSKG-I-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 86 KeGyL~l~kkg-~-~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
++|||+++.+. + ..+.|++|||||+++.|+||+++.+..+. ..+.|.++.+... ....+.++|.|...
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~----~~~~k~~~F~I~~~-- 71 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAE----GLIFLSGFTIESA----KEVKKKYAFKVCHP-- 71 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccc----eEEEccCCEEEEc----hhcCCceEEEECCC--
Confidence 68999887543 2 57899999999999999999998765331 2344554443321 12357888888743
Q ss_pred CCceEEEEecChhhHHHHHHHHHHH
Q 004638 164 DGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 164 dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
+.++|+|+|+|++++..||.||++|
T Consensus 72 ~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3499999999999999999999864
No 62
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.56 E-value=1.3e-14 Score=132.88 Aligned_cols=94 Identities=23% Similarity=0.244 Sum_probs=66.6
Q ss_pred EEEeeeEeeecCC---CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeE-e--------cCC
Q 004638 85 FKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-K--------ADK 152 (740)
Q Consensus 85 ~KeGyL~l~kkg~---~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~-~--------~~K 152 (740)
+++|||+++.++. ..++|++|||||+++.|+||+++.+... ...+.|.|..+..+.. . ..+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~-------~~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRG-------SKKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccccc-------CcceeEECCcceEEEEecCCcCccccccc
Confidence 4799999875433 3569999999999999999998765311 1123333333222211 1 135
Q ss_pred ceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHH
Q 004638 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 153 k~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
++||.|.+. +++|+|+|+|++|+++||.||+.+
T Consensus 74 ~~~F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 788988875 689999999999999999999863
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.48 E-value=1.7e-13 Score=123.40 Aligned_cols=89 Identities=26% Similarity=0.531 Sum_probs=62.4
Q ss_pred EeeeEeeecCCCCCCceeEEEEEeC--CeEEEeccCCCCCCCCCccceeecCCeeecCCCceeE---------ecCCceE
Q 004638 87 SGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV---------KADKKLL 155 (740)
Q Consensus 87 eGyL~l~kkg~~~ksWkKRwfVL~~--~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~---------~~~Kk~~ 155 (740)
+|||+ |+|...++|++|||||.+ ..|.||+++.+..+. +.|++.....+.. ...+.++
T Consensus 2 ~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~---------g~I~L~~~~~v~~~~~~~~~~~~~~~~~~ 70 (101)
T cd01235 2 EGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEK---------GCIDLAEVKSVNLAQPGMGAPKHTSRKGF 70 (101)
T ss_pred eEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCccc---------eEEEcceeEEEeecCCCCCCCCCCCCceE
Confidence 79555 566678999999999994 489999988765332 2222222222211 1134566
Q ss_pred EEEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 156 F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
|.+... +|+|+|+|++++++.+||.||+++|
T Consensus 71 f~i~t~---~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 71 FDLKTS---KRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEeC---CceEEEECCCHHHHHHHHHHHHhhC
Confidence 776543 6999999999999999999999864
No 64
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.48 E-value=1.9e-13 Score=121.83 Aligned_cols=90 Identities=16% Similarity=0.279 Sum_probs=65.6
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dg 165 (740)
++| |+.|.+...++|++|||||+++.|.||+++.+... ++.-.+.|..|.+.. ...++++|.|... .+
T Consensus 1 ~~G--~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~~~G~I~L~~~~i~~------~~~~~~~F~i~~~--~~ 68 (91)
T cd01247 1 TNG--VLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSH--GCRGSIFLKKAIIAA------HEFDENRFDISVN--EN 68 (91)
T ss_pred Cce--EEEEeccccCCCceEEEEEECCEEEEEecCccCcC--CCcEEEECcccEEEc------CCCCCCEEEEEeC--CC
Confidence 379 55566677899999999999999999999776421 122234444433322 2345678888654 35
Q ss_pred ceEEEEecChhhHHHHHHHHHH
Q 004638 166 RAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 166 rty~fqAdSeeE~~~WI~AI~~ 187 (740)
++|+|.|++++|+..||.||+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999975
No 65
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.48 E-value=2e-13 Score=128.56 Aligned_cols=97 Identities=22% Similarity=0.493 Sum_probs=70.1
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC--
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR-- 163 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~-- 163 (740)
|+|||+ |+++..+.|++|||||+++.|+||+++.+..+ ...+.|..+.+... ....+++||.|.....
T Consensus 2 k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~----~g~I~L~~~~v~~~----~~~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 2 REGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKEP----RGIIPLENVSIREV----EDPSKPFCFELFSPSDKQ 71 (125)
T ss_pred cEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCCc----eEEEECCCcEEEEc----ccCCCCeeEEEECCcccc
Confidence 789666 55556799999999999999999998775432 22344444333221 1235788898776432
Q ss_pred ----------------CCceEEEEecChhhHHHHHHHHHHHHhcC
Q 004638 164 ----------------DGRAFTLKAESLEDLYDWKTALENALAQA 192 (740)
Q Consensus 164 ----------------dgrty~fqAdSeeE~~~WI~AI~~ai~~a 192 (740)
..++|+|+|++++|+..||.||+.++...
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 12689999999999999999999998543
No 66
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.46 E-value=1.9e-13 Score=124.59 Aligned_cols=89 Identities=27% Similarity=0.509 Sum_probs=63.1
Q ss_pred EEeeeEeeecC-------CCCCCceeEEEEEeC-CeEEEeccCC-CCCCCCCccceeecCCeeecCCCceeEe---cCCc
Q 004638 86 KSGPLFISSKG-------IGWTSWKKRWFILTH-TSLVFFRSDP-SAIPQKGSEVNLTLGGIDLNNSGSVVVK---ADKK 153 (740)
Q Consensus 86 KeGyL~l~kkg-------~~~ksWkKRwfVL~~-~~L~yyKd~~-~~~~~~g~e~~i~L~~i~l~~s~sv~~~---~~Kk 153 (740)
++|||++..-+ ..+|+|+||||||++ +.|+||++.. +..| .+.|+|+.+..|... ..+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p---------~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLP---------QGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCccc---------ceEEEccceEEEeecccccCCc
Confidence 47988875443 347999999999985 5777777653 3322 344555554444221 2345
Q ss_pred eEEEEEecCCCCceEEEEecChhhHHHHHHHHH
Q 004638 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALE 186 (740)
Q Consensus 154 ~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~ 186 (740)
++|.|.+. +|+|+|.|+|++|++.||.+|.
T Consensus 72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 72 FSICILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred cEEEEECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 78888765 7999999999999999999986
No 67
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.45 E-value=3.2e-13 Score=122.58 Aligned_cols=91 Identities=24% Similarity=0.347 Sum_probs=64.4
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCC------eEEEeccCCCCCCCCCccceeecCCeeecCCCceeEe--cCCceE
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT------SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK--ADKKLL 155 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~------~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~--~~Kk~~ 155 (740)
|+++|||.++ ++|+||||||++. .|.||++++...... ..+.+.|.|+.+..|... ..++++
T Consensus 2 v~k~GyL~K~------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~~ 71 (101)
T cd01257 2 VRKSGYLRKQ------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRHL 71 (101)
T ss_pred ccEEEEEeEe------cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCeE
Confidence 7899977654 7999999999988 799999987531110 012334444444444222 224577
Q ss_pred EEEEecCCCCceEEEEecChhhHHHHHHHHHH
Q 004638 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 156 F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ 187 (740)
|.|.+. .++|+|.|+|++|+++|+.+|..
T Consensus 72 f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 72 IALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 877664 58999999999999999999964
No 68
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.44 E-value=5.4e-13 Score=117.81 Aligned_cols=93 Identities=23% Similarity=0.453 Sum_probs=66.3
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dg 165 (740)
|+|||+++..+. .+.|++|||||+++.|.||+++.... ..+...+.+..|.+.... ....++++|.|... .
T Consensus 1 k~G~L~kk~~~~-~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~~~~v~~~~---~~~~~~~~f~i~~~---~ 71 (94)
T cd01250 1 KQGYLYKRSSKS-NKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLRRCTVRHNG---KQPDRRFCFEVISP---T 71 (94)
T ss_pred CcceEEEECCCc-CCCceEEEEEEeCCeEEEEcCCcccc--cccceEEeccceEEecCc---cccCCceEEEEEcC---C
Confidence 589887755332 58999999999999999999976521 111223445444433321 11137889998865 3
Q ss_pred ceEEEEecChhhHHHHHHHHHH
Q 004638 166 RAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 166 rty~fqAdSeeE~~~WI~AI~~ 187 (740)
++|+|+|++++++.+||.||++
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 69
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=1e-12 Score=119.52 Aligned_cols=97 Identities=19% Similarity=0.324 Sum_probs=66.3
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEe-CCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~-~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~ 162 (740)
|+|+| |+.|+|...+.|++|||+|+ ++.|.||++....... ..++++.+.+..+..+.....+.++|.|....
T Consensus 1 v~k~G--~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEG--WLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEE--EEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 46999 55566677899999999999 7789989886543221 13445566655433222233566788887321
Q ss_pred ---CCCceEEEEecChhhHHHHHHHHHHH
Q 004638 163 ---RDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 163 ---~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
...| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 55799999999999999875
No 70
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.39 E-value=2.2e-12 Score=113.28 Aligned_cols=91 Identities=23% Similarity=0.361 Sum_probs=64.6
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dg 165 (740)
++|||+++ ++..+.|++|||||+++.|+||+++..... .+...+.+..+.+. ....+.++|.|... ++
T Consensus 1 ~~G~L~k~--~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~--~~~~~i~l~~~~~~------~~~~~~~~F~i~~~--~~ 68 (91)
T cd01246 1 VEGWLLKW--TNYLKGWQKRWFVLDNGLLSYYKNKSSMRG--KPRGTILLSGAVIS------EDDSDDKCFTIDTG--GD 68 (91)
T ss_pred CeEEEEEe--cccCCCceeeEEEEECCEEEEEecCccCCC--CceEEEEeceEEEE------ECCCCCcEEEEEcC--CC
Confidence 58976654 444589999999999999999999875410 11122333333322 22344678888743 56
Q ss_pred ceEEEEecChhhHHHHHHHHHHH
Q 004638 166 RAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 166 rty~fqAdSeeE~~~WI~AI~~a 188 (740)
++|+|+|++.+|+..||.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 71
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.36 E-value=7.6e-12 Score=110.55 Aligned_cols=101 Identities=23% Similarity=0.415 Sum_probs=75.4
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCcee--EecCCceEEEEEec
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV--VKADKKLLTVLFPD 161 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~--~~~~Kk~~F~I~~~ 161 (740)
++++|||+++. ...+.|++|||||+++.|+||+++... ....+...+.+..+.+....... ......++|.|...
T Consensus 1 ~~~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDK-SDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTT-TESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCccc-cceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 57999888777 456899999999999999999998741 11233445666666655432210 11357888988876
Q ss_pred CCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 162 GRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 162 ~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.+..|+|+|+|++++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 34699999999999999999999886
No 72
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.36 E-value=2.9e-12 Score=116.50 Aligned_cols=96 Identities=25% Similarity=0.342 Sum_probs=64.0
Q ss_pred EeeeEee------ecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEe
Q 004638 87 SGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (740)
Q Consensus 87 eGyL~l~------kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~ 160 (740)
+|||.++ +++...+.|++|||||+++.|+||+++............+.+.++.+.... ....++++|.|..
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~---~~~k~~~~F~l~~ 78 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS---DYTKKKHVFRLRL 78 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC---CcccCceEEEEEe
Confidence 6777753 233357899999999999999999987643221112122333222221110 0124567888764
Q ss_pred cCCCCceEEEEecChhhHHHHHHHHHH
Q 004638 161 DGRDGRAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 161 ~~~dgrty~fqAdSeeE~~~WI~AI~~ 187 (740)
++|++|+|+|+++++|..|+.||+.
T Consensus 79 --~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 79 --PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred --cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 3689999999999999999999975
No 73
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.35 E-value=3.2e-12 Score=117.41 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=59.9
Q ss_pred EeeeEeeecCC--CCCCceeEEEEEeCCe-------EEEeccCCCCCCCCCccceeecCCeeecCCCceeEec--CCceE
Q 004638 87 SGPLFISSKGI--GWTSWKKRWFILTHTS-------LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA--DKKLL 155 (740)
Q Consensus 87 eGyL~l~kkg~--~~ksWkKRwfVL~~~~-------L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~--~Kk~~ 155 (740)
+|||.+++... +.++|++|||||+++. |.||+++.+..+. -.+.|..|............ ...+.
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~----g~I~L~~~~~v~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLE----FVIDLESCSQVDPGLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccc----eEEECCccEEEcccccccccCcccceE
Confidence 79666543321 3569999999999876 5999987655332 22333333322111000011 22345
Q ss_pred EEEEecCCCCceEEEEecChhhHHHHHHHHHHH
Q 004638 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 156 F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
|.+.. +.|+|+|.|+|++||+.||.+|..+
T Consensus 78 f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 66654 3699999999999999999999763
No 74
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=8.3e-12 Score=116.24 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=66.2
Q ss_pred EEeeeEee------ecCC--CCCCceeEEEEEeCCeEEEeccCCCCCCCC---CccceeecCCeeecCCCce--eEecCC
Q 004638 86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGIDLNNSGSV--VVKADK 152 (740)
Q Consensus 86 KeGyL~l~------kkg~--~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~---g~e~~i~L~~i~l~~s~sv--~~~~~K 152 (740)
|+|+|.++ +++. ..+.|+++||||+++.|+||||+....... ..+..+ .|..+.+. .....|
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~I-----si~~a~~~ia~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAI-----SIHHALATRASDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceE-----EeccceeEeeccccCC
Confidence 68888763 1222 258999999999999999999986421110 111222 33333211 123355
Q ss_pred ceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 153 k~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
++.|.|. ..+|+.|+|||.+++||..||.+|+.+.+
T Consensus 77 ~~VF~L~--~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLR--TADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEE--cCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5566665 45789999999999999999999998863
No 75
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.31 E-value=8e-12 Score=112.87 Aligned_cols=77 Identities=22% Similarity=0.241 Sum_probs=56.6
Q ss_pred CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeE-e---cCCceEEEEEecCCCCceEEEEec
Q 004638 98 GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-K---ADKKLLTVLFPDGRDGRAFTLKAE 173 (740)
Q Consensus 98 ~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~-~---~~Kk~~F~I~~~~~dgrty~fqAd 173 (740)
..++||+|||+|++..|+||+++... ..+.|+|.....+.. . ..+.++|.|... .++|+|+|+
T Consensus 17 ~~~n~KkRwF~Lt~~~L~Y~k~~~~~----------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~---~r~~yi~a~ 83 (98)
T cd01244 17 KVLHFKKRYFQLTTTHLSWAKDVQCK----------KSALIKLAAIKGTEPLSDKSFVNVDIITIVCE---DDTMQLQFE 83 (98)
T ss_pred cCcCCceeEEEECCCEEEEECCCCCc----------eeeeEEccceEEEEEcCCcccCCCceEEEEeC---CCeEEEECC
Confidence 35799999999999999999986532 233344444333311 1 234578888765 589999999
Q ss_pred ChhhHHHHHHHHHH
Q 004638 174 SLEDLYDWKTALEN 187 (740)
Q Consensus 174 SeeE~~~WI~AI~~ 187 (740)
+++|+++||.||+.
T Consensus 84 s~~E~~~Wi~al~k 97 (98)
T cd01244 84 APVEATDWLNALEK 97 (98)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999985
No 76
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=1.1e-11 Score=116.17 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=69.2
Q ss_pred EEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCce-eEecCCceEEEEEecCC
Q 004638 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV-VVKADKKLLTVLFPDGR 163 (740)
Q Consensus 85 ~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv-~~~~~Kk~~F~I~~~~~ 163 (740)
...|||.+....+..++|++|||||+|+.|+||+.+.+. ....+...+.|..|.+.....+ .....|++.|.|.....
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~-~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~ 80 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE-KRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRP 80 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc-ccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecc
Confidence 467999986655678999999999999999999987763 2233334455555444332111 01235777787754211
Q ss_pred C----------------Cce-EEEEecChhhHHHHHHHHHHH
Q 004638 164 D----------------GRA-FTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 164 d----------------grt-y~fqAdSeeE~~~WI~AI~~a 188 (740)
. .++ |+|.|+|.+|+.+|+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 81 KMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1 122 678899999999999999863
No 77
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=7.9e-12 Score=112.94 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=70.0
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEE----eccC--CCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEE
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVF----FRSD--PSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~y----yKd~--~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~ 159 (740)
|+||||++.+++...+|.|+||.+.+..-.| +... ++..........+.+..|.+.... ..+|+|||+|+
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~----~~dRRFCFei~ 76 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTE----SIDKRFCFDVE 76 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccC----CccceeeEeee
Confidence 6899999998888779999999999864333 2111 110011122234556666666653 45999999999
Q ss_pred ecCCCCceEEEEecChhhHHHHHHHHHH
Q 004638 160 PDGRDGRAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 160 ~~~~dgrty~fqAdSeeE~~~WI~AI~~ 187 (740)
...++ .+++|||+|+.++..||.||++
T Consensus 77 ~~~~~-~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 77 VEEKP-GVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred ecCCC-CeEEEEecCHHHHHHHHHhhcC
Confidence 88766 4699999999999999999975
No 78
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.29 E-value=8.1e-12 Score=134.47 Aligned_cols=143 Identities=19% Similarity=0.260 Sum_probs=123.8
Q ss_pred CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC---------------------------CCC-----
Q 004638 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK---------------------------TEF----- 289 (740)
Q Consensus 242 ~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---------------------------~~~----- 289 (740)
...|.++...+.+.+.+|+.++|++|..+..+..++++..-+.|+ +.|
T Consensus 69 ~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r 148 (514)
T KOG4370|consen 69 IPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVAR 148 (514)
T ss_pred CcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHH
Confidence 346889999999999999999999999988877666665433321 000
Q ss_pred ---------CCCCCcchhhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004638 290 ---------SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMM 359 (740)
Q Consensus 290 ---------~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~ 359 (740)
...+++.+||++||.|||+||++|++.++...|..++.... ....+.++.++. .||.+||.++.||+-|
T Consensus 149 ~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk-~Lp~cNyll~swl~lH 227 (514)
T KOG4370|consen 149 SCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLK-ILPKCNYLLYSWLNLH 227 (514)
T ss_pred HHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHH-hccccchHHHHHHHHH
Confidence 12468899999999999999999999999999999998888 788888888775 9999999999999999
Q ss_pred HHHHHhhhcccCCCccchhhhhcccc
Q 004638 360 MQTVASSKNQNRMSTSAVAACMAPLL 385 (740)
Q Consensus 360 L~~Va~~s~~NkMta~NLAivFaP~L 385 (740)
+-.|....-.|||++.||+|+..|++
T Consensus 228 ~d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 228 KDKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHHHHHHhhcchhheeeecchHH
Confidence 99999999999999999999999988
No 79
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.25 E-value=1.9e-11 Score=110.27 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=63.2
Q ss_pred EeeeEeeecCCC-CCCceeEEEEEeC----CeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEec
Q 004638 87 SGPLFISSKGIG-WTSWKKRWFILTH----TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (740)
Q Consensus 87 eGyL~l~kkg~~-~ksWkKRwfVL~~----~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~ 161 (740)
.|||. |+|+. .|+|++|||+|.+ ++|+||++..+..|.. .+.+..+.+.+... ....+.+||.+...
T Consensus 2 ~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~g----li~l~~~~V~~v~d--s~~~r~~cFel~~~ 73 (98)
T cd01245 2 KGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIG----LIDLSDAYLYPVHD--SLFGRPNCFQIVER 73 (98)
T ss_pred CCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccc----eeeccccEEEEccc--cccCCCeEEEEecC
Confidence 58655 44444 7999999999987 8999999988764321 23333333333210 01267799999765
Q ss_pred CCCCceEEEEecChhhHHHHHHHHHH
Q 004638 162 GRDGRAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 162 ~~dgrty~fqAdSeeE~~~WI~AI~~ 187 (740)
.. +++|+++|++ +|+++||.+|+.
T Consensus 74 ~~-~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 74 AL-PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence 22 2689999999 999999999975
No 80
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4.7e-11 Score=122.80 Aligned_cols=102 Identities=24% Similarity=0.467 Sum_probs=75.5
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
..++|||++.+.+ ..++||+|||+|++++|+||.-..+..|.+ .++|..+.++.. ....|.+||.+.....
T Consensus 260 pdREGWLlKlgg~-rvktWKrRWFiLtdNCLYYFe~tTDKEPrG----IIpLeNlsir~V----edP~kP~cfEly~ps~ 330 (395)
T KOG0930|consen 260 PDREGWLLKLGGN-RVKTWKRRWFILTDNCLYYFEYTTDKEPRG----IIPLENLSIREV----EDPKKPNCFELYIPSN 330 (395)
T ss_pred ccccceeeeecCC-cccchhheeEEeecceeeeeeeccCCCCCc----ceeccccceeec----cCCCCCCeEEEecCCC
Confidence 4689988877433 579999999999999999998766654432 244554444432 2347889998875322
Q ss_pred ------------CCc-------eEEEEecChhhHHHHHHHHHHHHhcCCC
Q 004638 164 ------------DGR-------AFTLKAESLEDLYDWKTALENALAQAPS 194 (740)
Q Consensus 164 ------------dgr-------ty~fqAdSeeE~~~WI~AI~~ai~~aPs 194 (740)
+|| .|.++|.+.+|+.+||.+|+.+|...|-
T Consensus 331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pf 380 (395)
T KOG0930|consen 331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPF 380 (395)
T ss_pred CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 333 7999999999999999999999976553
No 81
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.17 E-value=1.3e-11 Score=109.18 Aligned_cols=57 Identities=49% Similarity=0.714 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcCCCCCCC-CCCcccccccCC
Q 004638 680 SRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSF-PIPDTIDEKVSL 736 (740)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 736 (740)
+||+++|++|.+|||||.+||+|||+|+++|.|||.||+.+.|.+ ++|.+|+.|+++
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~ke 58 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKE 58 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHH
Confidence 589999999999999999999999999999999999999998888 788999998875
No 82
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.16 E-value=4.3e-11 Score=139.30 Aligned_cols=145 Identities=21% Similarity=0.300 Sum_probs=130.7
Q ss_pred CCcHHHHHHHHHHHHhCCccCCeee-cCCCHHHHHHHHHHHhcCCCCC--CCCCCcchhhhhHHHHHhhCCCC-CCChhh
Q 004638 243 GTPSFLEKAIRFIEEHGVQVEGILR-QAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSS-PVPASC 318 (740)
Q Consensus 243 ~VP~~l~~~i~~Le~~Gl~~EGIFR-~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vAslLK~fLReLPeP-Llp~~l 318 (740)
.||.+|..|+.+++.+|+..+|||| +++....|..++.++.+|.... ..+.+... |.+||.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 4999999999999999999999999 8999999999999999984222 22345555 99999999999999 999999
Q ss_pred HHHHHHHHhcCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCC
Q 004638 319 CNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (740)
Q Consensus 319 ~~~~i~~~~~~~-~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~ 389 (740)
|..|+.+....+ .+++..++.++. .+|..+..++.+|+.|+...+..+..|.|++.|+|+||||+++--+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 999999999888 777788998887 9999999999999999999999999999999999999999997654
No 83
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.16 E-value=6.3e-11 Score=110.88 Aligned_cols=102 Identities=24% Similarity=0.387 Sum_probs=58.7
Q ss_pred EEeeeEee------ecCC--CCCCceeEEEEEeCCeEEEeccCCCCC---CC--CCccceeecCCeeecCCCceeE--ec
Q 004638 86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAI---PQ--KGSEVNLTLGGIDLNNSGSVVV--KA 150 (740)
Q Consensus 86 KeGyL~l~------kkg~--~~ksWkKRwfVL~~~~L~yyKd~~~~~---~~--~g~e~~i~L~~i~l~~s~sv~~--~~ 150 (740)
|+|||.++ +++. ..++|+..|+||++..|+|||+..... +. ...+...+...+.|..+.+... ..
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~ 81 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT 81 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence 79988873 2333 578999999999999999999953211 10 0111111122233333322222 23
Q ss_pred CCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 151 ~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.|+++|.+.+ .+|..|+|||.++++|..||.+|+-+.
T Consensus 82 Kr~~VFrL~~--~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 82 KRKNVFRLRT--ADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cCCeEEEEEe--CCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 5677777764 479999999999999999999998753
No 84
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.15 E-value=1.8e-10 Score=104.59 Aligned_cols=89 Identities=19% Similarity=0.334 Sum_probs=69.3
Q ss_pred CCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecC-CCCceEEEEecC
Q 004638 96 GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG-RDGRAFTLKAES 174 (740)
Q Consensus 96 g~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~-~dgrty~fqAdS 174 (740)
+..+++||+|||+|++..|+|||+..+. .+.+...+.+.+|.+.+...+ ..++|++.+.... .+.++|+|.|+|
T Consensus 14 ~~~~K~~KrrwF~lk~~~L~YyK~kee~--~~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~cds 88 (106)
T cd01237 14 KLTLKGYKQYWFTFRDTSISYYKSKEDS--NGAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRCDN 88 (106)
T ss_pred hhhhhhheeEEEEEeCCEEEEEccchhc--CCCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEECCC
Confidence 3457899999999999999999997764 244566788889988875332 2456777776543 334899999999
Q ss_pred hhhHHHHHHHHHHHH
Q 004638 175 LEDLYDWKTALENAL 189 (740)
Q Consensus 175 eeE~~~WI~AI~~ai 189 (740)
++++..||.|++.|.
T Consensus 89 Eeqya~Wmaa~rlas 103 (106)
T cd01237 89 EKQYAKWMAACRLAS 103 (106)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998763
No 85
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.09 E-value=4.1e-10 Score=104.33 Aligned_cols=97 Identities=26% Similarity=0.457 Sum_probs=50.4
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEe-CCeEEEeccCCCCCC--------C---CCccce--eecCCee-ecCCCceeEec
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIP--------Q---KGSEVN--LTLGGID-LNNSGSVVVKA 150 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~-~~~L~yyKd~~~~~~--------~---~g~e~~--i~L~~i~-l~~s~sv~~~~ 150 (740)
|+|||++.... +.+.|++|||+|. ++.|.|||.+.+... . ...... .....+. +... .. ...
T Consensus 1 k~G~l~K~~~~-~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDK-NP-FGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES--T---SS
T ss_pred CCceEEEecCC-CCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccC-Cc-ccC
Confidence 68988766554 4799999999999 999999999332210 0 000000 0000010 0000 00 011
Q ss_pred CCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHH
Q 004638 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 151 ~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
.-...|.|.+. .++|+|.|++.+|+.+||.||+.|
T Consensus 78 ~~~~~~~i~T~---~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSIFTP---TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEEE-S---S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEEECC---CcEEEEEECCHHHHHHHHHHHHhC
Confidence 12233444332 589999999999999999999864
No 86
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.03 E-value=1.4e-09 Score=102.21 Aligned_cols=76 Identities=26% Similarity=0.411 Sum_probs=55.6
Q ss_pred CceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCcee--------------EecCCceEEEEEecCCCCc
Q 004638 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV--------------VKADKKLLTVLFPDGRDGR 166 (740)
Q Consensus 101 sWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~--------------~~~~Kk~~F~I~~~~~dgr 166 (740)
+|++|||||++..|.||+++.+..+ ++.+.+...-.|. ....+++.|.|... .|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~~---------~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~---~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQI---------LDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNS---NR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCce---------eeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcC---Cc
Confidence 7999999999999999999877532 2222222222111 11356777877655 79
Q ss_pred eEEEEecChhhHHHHHHHHHHH
Q 004638 167 AFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 167 ty~fqAdSeeE~~~WI~AI~~a 188 (740)
+|.|.|+|+.++.+|+++|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 87
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.01 E-value=1.3e-09 Score=96.39 Aligned_cols=86 Identities=28% Similarity=0.492 Sum_probs=59.6
Q ss_pred eeeEeeecCCCCCCceeEEEEE--eCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCC
Q 004638 88 GPLFISSKGIGWTSWKKRWFIL--THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (740)
Q Consensus 88 GyL~l~kkg~~~ksWkKRwfVL--~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dg 165 (740)
|||.++.+. ..+.|+|||||| ..+.|.||+++.+... + +.++|..+ .+.+ ..+..++.|... +
T Consensus 1 G~llKkrr~-~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~-r--------Gsi~v~~a-~is~-~~~~~~I~idsg---~ 65 (89)
T PF15409_consen 1 GWLLKKRRK-PLQGWHKRYFVLDFEKGTLSYYRNQNSGKL-R--------GSIDVSLA-VISA-NKKSRRIDIDSG---D 65 (89)
T ss_pred Ccceeeccc-cCCCceeEEEEEEcCCcEEEEEecCCCCee-E--------eEEEccce-EEEe-cCCCCEEEEEcC---C
Confidence 766655444 479999999999 8999999998765411 1 22333322 1112 234455666543 6
Q ss_pred ceEEEEecChhhHHHHHHHHHHH
Q 004638 166 RAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 166 rty~fqAdSeeE~~~WI~AI~~a 188 (740)
.+|+|.|.++++++.|+.||+.+
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999864
No 88
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.98 E-value=2.9e-09 Score=96.77 Aligned_cols=98 Identities=12% Similarity=0.209 Sum_probs=67.5
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCC-CCCccceeecCCeeecCCCceeEecCCceEEEEEecC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP-QKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~-~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~ 162 (740)
.+|+|+| .|.+...+.|+.|||.|-++.|.|++....... .....-.+.+.++.+... .....+++|.|...
T Consensus 2 ~ikeG~L--~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~----~~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEGSV--LKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG----DNLERPHSFLVSGK- 74 (101)
T ss_pred cccceEE--EEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC----CCCCcCceEEEecC-
Confidence 4799955 555555689999999999999999985422100 001112244444444322 12246788888765
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 163 ~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
.++|+|+|+|++|+.+||.||+.++.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999874
No 89
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.97 E-value=6.2e-09 Score=90.24 Aligned_cols=100 Identities=30% Similarity=0.494 Sum_probs=68.5
Q ss_pred EEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCC
Q 004638 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (740)
Q Consensus 85 ~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~d 164 (740)
.++|||++...+ ....|++|||+|.++.|.||++...... ......+.+..+.+...... .....+++|.|... +
T Consensus 2 ~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~~~~~i~l~~~~v~~~~~~-~~~~~~~~f~l~~~--~ 76 (102)
T smart00233 2 IKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YKPKGSIDLSGITVREAPDP-DSAKKPHCFEIKTA--D 76 (102)
T ss_pred ceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CCCceEEECCcCEEEeCCCC-ccCCCceEEEEEec--C
Confidence 589988776653 4579999999999999999998765311 11222344444333322110 00135778888765 3
Q ss_pred CceEEEEecChhhHHHHHHHHHHHH
Q 004638 165 GRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 165 grty~fqAdSeeE~~~WI~AI~~ai 189 (740)
+.+|+|+|+|++++..|+.+|+.++
T Consensus 77 ~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999998865
No 90
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.78 E-value=3e-08 Score=85.14 Aligned_cols=95 Identities=27% Similarity=0.537 Sum_probs=63.8
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dg 165 (740)
++|||+....+. ...|+++||+|.++.|.+|+...... ...+...+.+..+.+..... .....++|.|... ++
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~---~~~~~~~f~i~~~--~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESPD---DSGRKNCFEIRTP--DG 73 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECCC---cCCCCcEEEEecC--CC
Confidence 478776655443 47999999999999999999876531 11122223333333322100 0124788888865 34
Q ss_pred ceEEEEecChhhHHHHHHHHHH
Q 004638 166 RAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 166 rty~fqAdSeeE~~~WI~AI~~ 187 (740)
+.|+|+|+|++++..|+.+|+.
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 91
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.74 E-value=8.3e-08 Score=82.99 Aligned_cols=96 Identities=25% Similarity=0.453 Sum_probs=65.3
Q ss_pred EeeeEeeecCC--CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCC
Q 004638 87 SGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (740)
Q Consensus 87 eGyL~l~kkg~--~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~d 164 (740)
+|||.+..... ....|++|||+|.+..|.||++........ ..+.+..+.+..... ...+.++|.|......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~---~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPD---GSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCC---CCCCCceEEEECCCCC
Confidence 67666655443 257999999999999999999876553211 123333333222100 0135788888765223
Q ss_pred CceEEEEecChhhHHHHHHHHHHH
Q 004638 165 GRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 165 grty~fqAdSeeE~~~WI~AI~~a 188 (740)
.+.|+|+|++++++..|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 689999999999999999999863
No 92
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.74 E-value=5.8e-08 Score=86.23 Aligned_cols=99 Identities=30% Similarity=0.447 Sum_probs=73.7
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecC-
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG- 162 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~- 162 (740)
|++.|||-+...+.....=|.|||||+.++|+|||+..+..+ + ..++|.++.++.... --..+++||.+.-..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~-k---yilpLdnLk~Rdve~--gf~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK-K---YMLPLDGLKLRDIEG--GFMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc-c---ceeeccccEEEeecc--cccCCCcEEEEEcCcc
Confidence 578999998877765556799999999999999999877633 2 446677776665321 013688999887432
Q ss_pred ----CCCceEEEEecChhhHHHHHHHHHHH
Q 004638 163 ----RDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 163 ----~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
.+-++.-|+|++.+++..|...+-.|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 13467889999999999999887654
No 93
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.67 E-value=2.5e-08 Score=89.20 Aligned_cols=99 Identities=19% Similarity=0.358 Sum_probs=66.4
Q ss_pred EEEeeeEeeecCCCCCCceeEEEEEeCCe-----EEEeccCCCCCCCCCccceeecCCeeecCCCcee-------EecCC
Q 004638 85 FKSGPLFISSKGIGWTSWKKRWFILTHTS-----LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-------VKADK 152 (740)
Q Consensus 85 ~KeGyL~l~kkg~~~ksWkKRwfVL~~~~-----L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~-------~~~~K 152 (740)
.++|||++.++. .+|+|+||||||++-+ ++-|+..+.. |...+.|.+..+.-+.... .-...
T Consensus 3 k~sGyL~k~Gg~-~~KkWKKRwFvL~qvsQYtfamcsy~ekks~-----P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg 76 (117)
T cd01234 3 KHCGYLYAIGKN-VWKKWKKRFFVLVQVSQYTFAMCSYREKKAE-----PTEFIQLDGYTVDYMPESDPDPNSELSLQGG 76 (117)
T ss_pred ceeEEEEeccch-hhhhhheeEEEEEchhHHHHHHHhhhhhcCC-----chhheeecceEEeccCCCCCCcccccccccc
Confidence 489977765543 5899999999999764 3445543322 2344566666665443321 11245
Q ss_pred ceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHhcC
Q 004638 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (740)
Q Consensus 153 k~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~a 192 (740)
+++|...- .|.+..|.++++.|+..||+||-.|.+++
T Consensus 77 ~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 77 RHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred hhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 55565442 37789999999999999999999987654
No 94
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.65 E-value=3e-09 Score=126.88 Aligned_cols=162 Identities=17% Similarity=0.266 Sum_probs=110.9
Q ss_pred eecCCchhhHhhhcccchhccccccccccC-CCcccccccCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCcccccC
Q 004638 5 QIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPM---ATNPPGGPPSGQPPGPPPGPNDHRITRA 80 (740)
Q Consensus 5 ~~~~~~~~~~~~d~~~~~~~l~~~lq~tR~-~~~~r~~~~sl~~~~~~m---~~~p~~~~~~~~p~~~~~~p~~~~~~~~ 80 (740)
-||++|+ .+...++||+.+|...+|.+|. ++..++.++......... ...|. .... . ++... .
T Consensus 204 ~fF~~g~-~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~~-~~~~-~----~~~~~------~ 270 (785)
T KOG0521|consen 204 NFFKQGE-DLLSQMDPYIKKVATYVQQLREESDAEQRAMEQRYQELRSASNLESRPK-SDSA-S----PSGGN------L 270 (785)
T ss_pred chhcccH-hHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhcc-cccc-c----ccccc------c
Confidence 5899997 8999999999999999999999 777776666542211110 00110 0000 0 00000 0
Q ss_pred CCceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEe
Q 004638 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (740)
Q Consensus 81 ~~~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~ 160 (740)
.....+.||||++... ..+.|+||||-..++.+.|++.-..... .+...|..|.+....+ ..++++||.|+.
T Consensus 271 ~~~~~~~~~l~~k~~~-~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS 342 (785)
T KOG0521|consen 271 KLGYRMEGYLRKKASN-ASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIIS 342 (785)
T ss_pred cchhhhhhhhhhhccc-chhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEec
Confidence 1125577766654444 4789999999999999999987554421 3445666676665422 237999999887
Q ss_pred cCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 161 DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 161 ~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
. .++|+|||+++.+...||.+|++.+.
T Consensus 343 ~---tks~~lQAes~~d~~~Wi~~i~nsi~ 369 (785)
T KOG0521|consen 343 P---TKSYLLQAESEKDCQDWISALQNSIL 369 (785)
T ss_pred C---CcceEEecCchhHHHHHHHHHHHHHH
Confidence 3 68899999999999999999999885
No 95
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.60 E-value=3.5e-07 Score=83.03 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=61.0
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
.++||+|.+..++ ..|.|+||.+.+..|++.+..... ......-.++|.++.+.... .....++||.|...
T Consensus 2 ~ikEG~L~K~~~k---~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~---~~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLLKLSKK---GLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESE---HEWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEEEEeCC---CCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeecc---CCcCCceeEEEEcC--
Confidence 5799977665432 467776666666544444432211 00011223555555554321 11245789999854
Q ss_pred CCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 164 dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
.+.|+|+|.|++|+.+||.+|+.+|.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999883
No 96
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.56 E-value=1.7e-07 Score=85.52 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=62.7
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCC--CceeEecCCceEEEEEecCC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS--GSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s--~sv~~~~~Kk~~F~I~~~~~ 163 (740)
.+|+||++..|. ++|||+||+|+..-|+|+-..+...+..-.-+ ..+.+..|-.. ..-..+.--.|||.|.+..-
T Consensus 2 ~~g~LylK~~gk--KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl-~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADGK--KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACL-NLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCCC--ccceEEEEEEeCCeeEEccCCCcCCHHHHHHH-HhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 589999988765 89999999999999998876554433210000 01111111100 00011223567888876432
Q ss_pred C----CceEEEEecChhhHHHHHHHHHHH
Q 004638 164 D----GRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 164 d----grty~fqAdSeeE~~~WI~AI~~a 188 (740)
. .-..+|||++++.+..||.||+=+
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 1 125689999999999999999854
No 97
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.47 E-value=1.1e-07 Score=107.91 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=137.9
Q ss_pred hcccCCCCCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHH----HHHHHHH-hcCCCCCCCCCC
Q 004638 220 LKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDV----HRRIREF-EQGKTEFSPEED 294 (740)
Q Consensus 220 ~~~k~~~~~vFGvpL~~~~~~~~~VP~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v----~~L~~~l-d~g~~~~~~~~d 294 (740)
..++..+...||+||+..+.+++.+|..|......|.+.+..++++||..-...-+ ......+ ..|.....+...
T Consensus 407 a~e~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~ssp 486 (741)
T KOG4724|consen 407 ALESELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSP 486 (741)
T ss_pred hhhhhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCC
Confidence 34445567789999999999999999998888888999999999999883332222 2222222 335555556679
Q ss_pred cchhhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHH-------HHHhcCChhHHHHHHHHHHHHHHHHhh
Q 004638 295 AHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRT-------AILETFPEPNRKLLQRILMMMQTVASS 366 (740)
Q Consensus 295 ~h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~-~~ri~~i~~-------lI~~~LP~~N~~lL~~Ll~~L~~Va~~ 366 (740)
+|++++++|.|+|.+|..++..+++.+++++....+ +++.++++. ++..+.|..+..+....+.-...+..+
T Consensus 487 v~taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~n 566 (741)
T KOG4724|consen 487 VHTAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSEN 566 (741)
T ss_pred chHHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccc
Confidence 999999999999999999999999999999998888 788999987 133588999888888888888888899
Q ss_pred hcccCCCccchhhhhcccccCCC
Q 004638 367 KNQNRMSTSAVAACMAPLLLRPL 389 (740)
Q Consensus 367 s~~NkMta~NLAivFaP~Llrp~ 389 (740)
+..+.|+..|++.|..|+++.-.
T Consensus 567 se~~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 567 SEETSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred cccccccccccCCCCCccccchh
Confidence 99999999999999999997643
No 98
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.40 E-value=2.7e-06 Score=78.75 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=71.3
Q ss_pred EEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCC--CCccceeec--CCeeecCCCce----eEecCCceEE
Q 004638 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ--KGSEVNLTL--GGIDLNNSGSV----VVKADKKLLT 156 (740)
Q Consensus 85 ~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~--~g~e~~i~L--~~i~l~~s~sv----~~~~~Kk~~F 156 (740)
..||||.+-+.++..+.|+++|+||.+..|+||..+.+...+ ..+...+.+ +.+.+...+.. ....+-.+.|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 479999888887767899999999999999999976654222 222233444 33443322111 1123556678
Q ss_pred EEEec----CCCCceEEEEecChhhHHHHHHHHHHH
Q 004638 157 VLFPD----GRDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 157 ~I~~~----~~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
.|+.. ..++.+.+|-|+++.|...|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 77753 234678999999999999999999864
No 99
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.31 E-value=5.1e-06 Score=92.95 Aligned_cols=146 Identities=14% Similarity=0.225 Sum_probs=119.4
Q ss_pred CcHHHHHHHHHHHHhCCccCCee---ecCCCHHHHHHHHHHH-hcCCCC--C--------CCCCCcchhhhhHHHHHhhC
Q 004638 244 TPSFLEKAIRFIEEHGVQVEGIL---RQAAYVDDVHRRIREF-EQGKTE--F--------SPEEDAHIIADCVKYVIREL 309 (740)
Q Consensus 244 VP~~l~~~i~~Le~~Gl~~EGIF---R~sG~~~~v~~L~~~l-d~g~~~--~--------~~~~d~h~vAslLK~fLReL 309 (740)
|=.+|..|.+.|..+|+++++|| |-.-+...++.++..| ..+... . ....++|+++++||..+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 33478899999999999999998 7777888888887764 443211 1 13469999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCC
Q 004638 310 PSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFP-EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388 (740)
Q Consensus 310 PePLlp~~l~~~~i~~~~~~~~~ri~~i~~lI~~~LP-~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp 388 (740)
|..+|+.+.|..|...-+..+ -...++..+|-..|| +.+..++..++.+|..|+.|+..|+|+..-|+-.+|+-+|..
T Consensus 88 p~gvVgW~~Y~~Fk~~E~~~~-yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRREREAG-YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred CCCccccHHHHHHHHHHhhcC-CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 999999999999988755444 234566666665664 667889999999999999999999999999999999999987
Q ss_pred Cc
Q 004638 389 LL 390 (740)
Q Consensus 389 ~~ 390 (740)
..
T Consensus 167 ~~ 168 (420)
T PF08101_consen 167 PD 168 (420)
T ss_pred CC
Confidence 64
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.27 E-value=8.1e-06 Score=74.59 Aligned_cols=102 Identities=12% Similarity=0.248 Sum_probs=69.4
Q ss_pred EEeeeEeeecCCC--CCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecC-CeeecCCCce----eEecCCceEEEE
Q 004638 86 KSGPLFISSKGIG--WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLG-GIDLNNSGSV----VVKADKKLLTVL 158 (740)
Q Consensus 86 KeGyL~l~kkg~~--~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~-~i~l~~s~sv----~~~~~Kk~~F~I 158 (740)
.||||-+.+.++. .+.|+++|+||.+..|+||..+.+... ..+...+.+. .+.+...+.. ....+-.+.|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~-~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKEN-STPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccC-CCcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 5898877666543 469999999999999999998765422 1133333332 2222221111 112355667888
Q ss_pred EecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 159 FPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 159 ~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
+.. +.+++.+|-|+++.|.+.|+.||...|
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 774 346999999999999999999998876
No 101
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.22 E-value=1.2e-06 Score=93.29 Aligned_cols=102 Identities=19% Similarity=0.313 Sum_probs=69.8
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEe-CCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEec
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~-~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~ 161 (740)
.|+++| |+.|+|...++|+.|||+|. ++.|.=|+..+....+ ...+|....+..+..+.....|.+.|+|.+-
T Consensus 14 ~vvkEg--WlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~----~p~pLNnF~v~~cq~m~~erPrPntFiiRcL 87 (516)
T KOG0690|consen 14 DVVKEG--WLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQP----TPEPLNNFMVRDCQTMKTERPRPNTFIIRCL 87 (516)
T ss_pred hhHHhh--hHhhcchhhhcccceEEEEeeCCceEeeccCCccCCC----CcccccchhhhhhhhhhccCCCCceEEEEee
Confidence 389999 66778888899999999997 5688888865433211 1234444455544444444566777776542
Q ss_pred -CCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 162 -GRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 162 -~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
...--.-+|.+++.++++.|+.||+.+..
T Consensus 88 QWTTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 88 QWTTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 11123468999999999999999998764
No 102
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=98.06 E-value=8.6e-06 Score=90.90 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=64.4
Q ss_pred CCceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccce-eecCCeeecCCCceeEecCCceEEEEE
Q 004638 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN-LTLGGIDLNNSGSVVVKADKKLLTVLF 159 (740)
Q Consensus 81 ~~~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~-i~L~~i~l~~s~sv~~~~~Kk~~F~I~ 159 (740)
.+.-.++|+||++..|. |+|||+||||+..-|||+-..+...+..-..+. +.-..+-..-...-..+.--.++|.|.
T Consensus 314 ~~~pei~GfL~~K~dgk--KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K 391 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGK--KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIK 391 (622)
T ss_pred CCCccccceeeeccccc--ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEee
Confidence 34568999999988765 899999999999999998766554333211110 000111100000000111234566666
Q ss_pred ecC-CCC-c-eEEEEecChhhHHHHHHHHHHH
Q 004638 160 PDG-RDG-R-AFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 160 ~~~-~dg-r-ty~fqAdSeeE~~~WI~AI~~a 188 (740)
+.. +.. | .-+|||++++-+..|+.||+-+
T Consensus 392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred eccccCcccceeeeecccchhHHHHHHHHHHH
Confidence 643 222 2 3479999999999999999854
No 103
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.02 E-value=6.7e-06 Score=96.74 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=75.4
Q ss_pred CceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCcee-EecCCceEEEEEe
Q 004638 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VKADKKLLTVLFP 160 (740)
Q Consensus 82 ~~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~-~~~~Kk~~F~I~~ 160 (740)
-.|+..|||++-.-+.+...|++|||+|.++.+.|+|.+.+.. .+++...+.|..|.-...+.+. ....+.+-|.|.+
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~ 1066 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEV 1066 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccccccchhhhccCCceeEEEe
Confidence 3478889999988777778899999999999999999887764 4544444555544433322221 0124555566662
Q ss_pred c-----CCC-----Cc-eEEEEecChhhHHHHHHHHHHHHhc
Q 004638 161 D-----GRD-----GR-AFTLKAESLEDLYDWKTALENALAQ 191 (740)
Q Consensus 161 ~-----~~d-----gr-ty~fqAdSeeE~~~WI~AI~~ai~~ 191 (740)
- +.+ -| ...|.|+|.+++..|+.+|..++..
T Consensus 1067 ~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1067 WRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred ecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 1 000 12 5789999999999999999998753
No 104
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=97.89 E-value=6.2e-06 Score=96.87 Aligned_cols=92 Identities=27% Similarity=0.522 Sum_probs=68.7
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCC--eEEEeccCCCCCCCCCccceeecCCeeecCCCceeE----ecCCceEEE
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT--SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV----KADKKLLTV 157 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~--~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~----~~~Kk~~F~ 157 (740)
.+-+|||| |+|++.|.|+.|||||... .|+||.+-.+..| +| +|++....++.. .-+.|-+|+
T Consensus 1634 r~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~p-kG--------~IdLaevesv~~~~~k~vdekgffd 1702 (1732)
T KOG1090|consen 1634 RIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKP-KG--------CIDLAEVESVALIGPKTVDEKGFFD 1702 (1732)
T ss_pred cCcccchh--hcchhhcccccceeEecCCccceeeecccccccc-cc--------hhhhhhhhhhcccCccccCccceee
Confidence 45699666 6677889999999999855 8999998877644 22 233333222211 236777889
Q ss_pred EEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 158 I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
+... .|+|.|+|.+.....+|+..|+.++
T Consensus 1703 lktt---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1703 LKTT---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eehh---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 8876 6899999999999999999999876
No 105
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=97.85 E-value=0.00013 Score=66.71 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=54.8
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEeCC-eEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEec
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHT-SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~-~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~ 161 (740)
.+.++|++.+++ | . .+++|||+|++. .|+|+. +... ..-+.|.+.....+..+.. ..|.|.+.
T Consensus 12 ~Il~~g~v~K~k-g-l--~~kkR~liLTd~PrL~Yvd-p~~~---------~~KGeI~~~~~l~v~~k~~--~~F~I~tp 75 (104)
T PF14593_consen 12 LILKQGYVKKRK-G-L--FAKKRQLILTDGPRLFYVD-PKKM---------VLKGEIPWSKELSVEVKSF--KTFFIHTP 75 (104)
T ss_dssp -EEEEEEEEEEE-T-T--EEEEEEEEEETTTEEEEEE-TTTT---------EEEEEE--STT-EEEECSS--SEEEEEET
T ss_pred eEEEEEEEEEee-c-e--EEEEEEEEEccCCEEEEEE-CCCC---------eECcEEecCCceEEEEccC--CEEEEECC
Confidence 499999666543 3 2 299999999999 555554 3322 1225555555444433323 34666655
Q ss_pred CCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 162 GRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 162 ~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
+|+|+|.. .+.+...|+.+|+.+..
T Consensus 76 ---~RtY~l~d-~~~~A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 76 ---KRTYYLED-PEGNAQQWVEAIEEVKK 100 (104)
T ss_dssp ---TEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred ---CcEEEEEC-CCCCHHHHHHHHHHHHH
Confidence 79999988 56778999999998763
No 106
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.69 E-value=0.00034 Score=64.16 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=64.8
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecC
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~ 162 (740)
..+++|-|.+.- .+..+.|||.|=.+.|+|-+-.... ......-.++|.++.+.... ....-++.|.|...
T Consensus 3 ~li~eG~L~K~~----rk~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~---d~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLTKMC----RKKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIE---DDGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEEEee----cCCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecC---CcccccceEEEecC-
Confidence 368999665433 3566889999999999996531111 00011122456666554321 11234678888765
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 163 ~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
.+.|+++|+|++|..+|+.+|..++.
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVT 99 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999985
No 107
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=2.5e-05 Score=87.63 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=65.4
Q ss_pred ceEEEeeeEee-------ecC-CCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCC-eeecCCCceeEecCCc
Q 004638 83 AVFKSGPLFIS-------SKG-IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG-IDLNNSGSVVVKADKK 153 (740)
Q Consensus 83 ~v~KeGyL~l~-------kkg-~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~-i~l~~s~sv~~~~~Kk 153 (740)
.+.|.|+|-++ +|. .+.+.||..|.||+|..|||-||+-...... ..-.|.. |.+..+-.-....++|
T Consensus 505 ~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kal---se~~lknavsvHHALAt~AtdY~K 581 (774)
T KOG0932|consen 505 ATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKAL---SESDLKNAVSVHHALATPATDYSK 581 (774)
T ss_pred hhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccch---hhhhhhhhhhhhhhhcCCCccccc
Confidence 47899977652 222 2467999999999999999999764221100 0001111 1111110001123445
Q ss_pred eEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 154 ~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
..|++.+.+-+.|.|+|||.+.++|..||..|.-+.
T Consensus 582 Kp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA 617 (774)
T KOG0932|consen 582 KPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVA 617 (774)
T ss_pred CCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 555666666789999999999999999999998664
No 108
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.00016 Score=83.43 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=73.7
Q ss_pred eEEEeeeEeeecC--C-CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeE-ecCCceEEEEE
Q 004638 84 VFKSGPLFISSKG--I-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-KADKKLLTVLF 159 (740)
Q Consensus 84 v~KeGyL~l~kkg--~-~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~-~~~Kk~~F~I~ 159 (740)
|.|+|.+...-+| . +.+++|||||.|+...|.|.|++... +...+++..|. ....+.. ..+.+++|.|+
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-----~~~~Ipl~nI~--avEklee~sF~~knv~qVV 637 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-----PIYTIPLSNIR--AVEKLEEKSFKMKNVFQVV 637 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC-----cccceeHHHHH--HHHHhhhhccCCCceEEEE
Confidence 4555544443332 2 24788999999999999999987654 22334444332 1111111 13678888888
Q ss_pred ecCCCCceEEEEecChhhHHHHHHHHHHHHhcCCCCCCCCcccCcccccch
Q 004638 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKA 210 (740)
Q Consensus 160 ~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~aPs~~~~~~~~~i~~~~~~ 210 (740)
.. .|+.+|||.+-.|.++|+.+|..+....+.. ...-+.|.|..+.-
T Consensus 638 ~~---drtly~Q~~n~vEandWldaL~kvs~~N~~r-Las~HPgaF~s~~w 684 (800)
T KOG2059|consen 638 HT---DRTLYVQAKNCVEANDWLDALRKVSCCNQNR-LASYHPGAFRSDSW 684 (800)
T ss_pred ec---CcceeEecCCchHHHHHHHHHHHHhccCcch-hhhcCCcccccCcc
Confidence 76 3799999999999999999999876422211 12335566666544
No 109
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.56 E-value=0.00036 Score=81.86 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=69.5
Q ss_pred ceEEEeeeEeeecCC-CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEe----cCCceEEE
Q 004638 83 AVFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK----ADKKLLTV 157 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~-~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~----~~Kk~~F~ 157 (740)
.+.+|||||..+... +..--++|||||.+..|.|||.++.. .+ ++++...+.....|... ...+-.|+
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~-----~~--~pirs~~id~~~rVed~Gr~~~~g~~~yv 75 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQD-----NQ--VPIKTLLIDGNCRVEDRGLKTHHGHMVYV 75 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCcc-----cc--ccceeeccCCCceEeecCceEEcCceEEE
Confidence 378999999876544 34556999999999999999985433 12 23333333333222211 12334455
Q ss_pred EEecC--CCCceEEEEecChhhHHHHHHHHHHHHhcC
Q 004638 158 LFPDG--RDGRAFTLKAESLEDLYDWKTALENALAQA 192 (740)
Q Consensus 158 I~~~~--~dgrty~fqAdSeeE~~~WI~AI~~ai~~a 192 (740)
+.+-. ...+...|.|-+.+|...|+.|++.++.++
T Consensus 76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 55532 234678999999999999999999999764
No 110
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.53 E-value=0.00061 Score=63.25 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=65.6
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCC-C--CCccce----eecCCeeecCCCceeEecCCceE
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP-Q--KGSEVN----LTLGGIDLNNSGSVVVKADKKLL 155 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~-~--~g~e~~----i~L~~i~l~~s~sv~~~~~Kk~~ 155 (740)
..+++|-|- +-....+.++.|||-|=++.|+|.|....... . .+..+. +.+..+.+... .....-++.
T Consensus 3 elI~EG~L~--ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~---~d~~~~kna 77 (112)
T cd01261 3 EFIMEGTLT--RVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDK---PDSSEYKNA 77 (112)
T ss_pred cccccCcEE--EEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEc---CCCcccCce
Confidence 367899554 33333478899999999999999996443110 0 011111 23333444321 111223677
Q ss_pred EEEEecCCCCceEEEEecChhhHHHHHHHHHHHHhc
Q 004638 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (740)
Q Consensus 156 F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~ 191 (740)
|.|... +++.|.|+|.|+++..+||.+|..++.+
T Consensus 78 F~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 78 FEIILK--DGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 888754 3678999999999999999999988753
No 111
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.31 E-value=0.00065 Score=62.56 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=62.0
Q ss_pred eeeEeeecC--CCCCCceeEEEEEeCCeEEEeccCCCCC-CCCCccceeecC--CeeecCCCce-eEecCCceEEEEEec
Q 004638 88 GPLFISSKG--IGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLG--GIDLNNSGSV-VVKADKKLLTVLFPD 161 (740)
Q Consensus 88 GyL~l~kkg--~~~ksWkKRwfVL~~~~L~yyKd~~~~~-~~~g~e~~i~L~--~i~l~~s~sv-~~~~~Kk~~F~I~~~ 161 (740)
|||.-+-.+ ...++|+.+|++|++..|++|+..+-.. .+..+....+|. .+.+...... .....+.+||.+.+.
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg 82 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG 82 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence 644433232 2458999999999999999999865421 112233333333 1111111111 002267789988865
Q ss_pred CCCC-ceEEEEecChhhHHHHHHHHHH
Q 004638 162 GRDG-RAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 162 ~~dg-rty~fqAdSeeE~~~WI~AI~~ 187 (740)
.+ ..++|..++..|+..|..||..
T Consensus 83 --~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 83 --TQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred --CceeeEEEEecCHHHHHHHHHHHhc
Confidence 34 7899999999999999999964
No 112
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.18 E-value=0.0009 Score=61.80 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=57.5
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCee-ecCC-CceeEecCCceEEEEEecCC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID-LNNS-GSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~-l~~s-~sv~~~~~Kk~~F~I~~~~~ 163 (740)
|||||----.. -+.|||+|++|...+|.+|+++....+-+. ++|..|. +..+ ..........+||+|.+.
T Consensus 2 kEGWmVHyT~~--d~~rKRhYWrLDsK~Itlf~~e~~skyyKe----IPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~-- 73 (117)
T cd01239 2 KEGWMVHYTSS--DNRRKKHYWRLDSKAITLYQEESGSRYYKE----IPLAEILSVSSNNGDSVLAKHPPHCFEIRTT-- 73 (117)
T ss_pred ccceEEEEecC--ccceeeeEEEecCCeEEEEEcCCCCeeeEE----eehHHheEEeccCCCcCCCCCCCcEEEEEec--
Confidence 79965432222 378999999999999999999876533222 2222211 1110 001112357899999875
Q ss_pred CCceEEEEecC--------------------hhhHHHHHHHHHHH
Q 004638 164 DGRAFTLKAES--------------------LEDLYDWKTALENA 188 (740)
Q Consensus 164 dgrty~fqAdS--------------------eeE~~~WI~AI~~a 188 (740)
..+|+.+.+. .+..+-|-+||++|
T Consensus 74 -~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 74 -TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred -CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 5788887642 23457777777653
No 113
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.15 E-value=0.00089 Score=76.85 Aligned_cols=100 Identities=24% Similarity=0.328 Sum_probs=60.1
Q ss_pred CceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEecc-CCCCCCCCCcccee-ec-CCeeecCCCceeEecCCceEEEE
Q 004638 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRS-DPSAIPQKGSEVNL-TL-GGIDLNNSGSVVVKADKKLLTVL 158 (740)
Q Consensus 82 ~~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd-~~~~~~~~g~e~~i-~L-~~i~l~~s~sv~~~~~Kk~~F~I 158 (740)
..+.+.|||+... .. ..|++|||.+.++.+..... .+..........++ .+ ..+.+... ....+.++|.+
T Consensus 375 sDv~~~G~l~k~~--~~-~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~----~~~~~~~~~~i 447 (478)
T PTZ00267 375 SDVTHGGYLYKYS--SD-MRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEV----YSQKHPNQLVL 447 (478)
T ss_pred CCcccceEEeccC--CC-cchhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHH----hcCCCCceEEE
Confidence 3478999776543 32 35999999999876655432 22211111011111 11 11111000 01246778877
Q ss_pred EecCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 159 FPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 159 ~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
.. +.|+.++|+|++++++++||.+|+.+++
T Consensus 448 ~~--~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 448 WF--NNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred Ee--cCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 54 4688899999999999999999999873
No 114
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=97.02 E-value=0.00016 Score=82.02 Aligned_cols=101 Identities=21% Similarity=0.392 Sum_probs=65.9
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEeCCe-----EEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEE
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTS-----LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTV 157 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~-----L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~ 157 (740)
.....||||.-++. .||.||||||||-.-+ ++-|+..+. .+...+.|.+..+.-.....--.+.+.+|.
T Consensus 463 nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekka-----epqel~qldgytvdytdp~pglqgg~~ffn 536 (1218)
T KOG3543|consen 463 NMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKA-----EPQELIQLDGYTVDYTDPSPGLQGGKHFFN 536 (1218)
T ss_pred ccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhccc-----ChHHHhhccCeeeccCCCCCccccchHHHH
Confidence 35678999988776 4899999999998654 333443322 122335566666554322111123333343
Q ss_pred EEecCCCCceEEEEecChhhHHHHHHHHHHHHhcC
Q 004638 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (740)
Q Consensus 158 I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~a 192 (740)
-. ..|.+..|..++++|+..|++||-.+.+++
T Consensus 537 av---kegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 537 AV---KEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred Hh---ccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 22 237889999999999999999999998654
No 115
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.89 E-value=0.0012 Score=60.11 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=62.4
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
++..||+.+.+ |.+...|++|||-|-.+.|-+|-..... ++++ +....+.--....+ ......|-.+.+.
T Consensus 3 cIvhGyi~KLG-GPFls~WQ~Ry~~LfPNRLE~~~~~~~~----~~eL-i~M~~i~~V~~e~~--~iK~~~CI~ik~k-- 72 (116)
T cd01240 3 CIVHGYIKKLG-GPFLSQWQTRYFKLYPNRLELYGESEAN----KPEL-ITMDQIEDVSVEFQ--QIKEENCILLKIR-- 72 (116)
T ss_pred eEEeeehhhhC-CHHHHHHHHHHheeCcceeeeccccccc----CCcE-EEeehhhhcchhhe--eeccCceEEEEEc--
Confidence 68899654433 4477899999999999999997543322 2222 22222210000111 1234456666654
Q ss_pred CCceEEEEecChhhHHHHHHHHHHHH
Q 004638 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 164 dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
+++.|.+.+.++-+...|...|+++-
T Consensus 73 ~~~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 73 DEKKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred CCceEEEecCCcHHHHHHHHHHHHHH
Confidence 57889999999999999999999875
No 116
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.79 E-value=0.00045 Score=60.13 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=59.5
Q ss_pred EeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCC----eeecCCCceeEecCCceEEEEEecC
Q 004638 87 SGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG----IDLNNSGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 87 eGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~----i~l~~s~sv~~~~~Kk~~F~I~~~~ 162 (740)
|||||+.+++. -+|||.||++..+.||.+.....- .++.|.. +.+...... ...-.-..|-|...+
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~L-----~sF~L~~s~~s~Pm~~~~~A-~~N~Gi~A~G~L~~~ 70 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQYL-----CSFQLSSSVVSHPMVNFSQA-VPNLGINAFGFLMYS 70 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCcee-----eeeehhhhhhhccccccccc-CCCCCeeEEEEEEec
Confidence 69999999875 489999999999999997643210 1111211 111111000 000022345566667
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHH
Q 004638 163 RDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 163 ~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
.+++..-+.|++.+-|+.|+++|...
T Consensus 71 ~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 71 PSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred CCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 78888889999999999999999764
No 117
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.72 E-value=0.016 Score=52.54 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=60.8
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
.+++|.|...+. =+-|++-|=+..|.|.|..++... -.-.+.+..+.+... .. ...++|.|.....
T Consensus 4 Llleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y~---~K~~i~~~~l~i~e~----~~-~d~~~F~v~~~~~ 69 (97)
T cd01222 4 LLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKYQ---FKAYIPCKNLMLVEH----LP-GEPLCFRVIPFDD 69 (97)
T ss_pred eeeeceEEeecC------CCceEEEEecccEEEEEecCCeeE---EEEEEEecceEEecC----CC-CCCcEEEEEecCC
Confidence 578897754332 235888888888999886543211 111233344443332 11 2378899877654
Q ss_pred CCceEEEEecChhhHHHHHHHHHHHH
Q 004638 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 164 dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
+.+.|.|+|.|.++.+.|+++|+.++
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHh
Confidence 55789999999999999999999876
No 118
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.33 E-value=0.0019 Score=79.70 Aligned_cols=160 Identities=15% Similarity=0.232 Sum_probs=124.4
Q ss_pred ccccChhHh---hhcCCCCcHHHHH-HHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC---C----CCCCCcch
Q 004638 229 VIGRPILLA---LEDVDGTPSFLEK-AIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---F----SPEEDAHI 297 (740)
Q Consensus 229 vFGvpL~~~---~~~~~~VP~~l~~-~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~----~~~~d~h~ 297 (740)
++|+++..+ ..-....|.++.. |.......|....|+||..+....+...+..++..... + ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 889988766 2224457888888 77888889999999999999989999998888874311 1 11335667
Q ss_pred hhhhHHHHHhhC--CCCCCChhhHHHHH----------------HHHhcCc-hHHH-------HHHHHHHHh----cCCh
Q 004638 298 IADCVKYVIREL--PSSPVPASCCNALL----------------EARRTDR-GSRV-------SAMRTAILE----TFPE 347 (740)
Q Consensus 298 vAslLK~fLReL--PePLlp~~l~~~~i----------------~~~~~~~-~~ri-------~~i~~lI~~----~LP~ 347 (740)
+.+.++.|+|.+ |.+......|..|+ ....... .+++ ..+..+. . .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~-~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELA-RYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhh-ccCCCCCCH
Confidence 777999999999 99988888888888 4443444 4555 5555533 4 7999
Q ss_pred hHHHHHHHHHHHHHHHHhhhccc-CCCc-cchhhhhcc----cccCCC
Q 004638 348 PNRKLLQRILMMMQTVASSKNQN-RMST-SAVAACMAP----LLLRPL 389 (740)
Q Consensus 348 ~N~~lL~~Ll~~L~~Va~~s~~N-kMta-~NLAivFaP----~Llrp~ 389 (740)
....+|.++..|+.+|.....+| .|+. .||..+|++ +++..+
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999999998 8888 999999999 555544
No 119
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.18 E-value=0.0029 Score=72.97 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=61.9
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecC
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~ 162 (740)
...+.||+ .+-+...+.|+|||||++.+.+.||+...+........+.+..+.+.+.. ..-..|.++..
T Consensus 248 ~~ekSgy~--~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~~- 316 (936)
T KOG0248|consen 248 TMEKSGYW--TQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLITS- 316 (936)
T ss_pred hhhcccch--hcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhhh-
Confidence 36789954 44445568999999999999999999877653211111222222222222 23334554433
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 163 ~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
..+|+|.++++--..+|++.|..+|.
T Consensus 317 --t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 --TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred --ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 36799999999999999998888774
No 120
>PLN02866 phospholipase D
Probab=96.16 E-value=0.031 Score=68.58 Aligned_cols=87 Identities=18% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCceeEEEEEeCCeEEEeccCCCCCCCCCccceeec-CCeeecCCCceeE------ecCCceEEEEEecCCCCceEEEEe
Q 004638 100 TSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTL-GGIDLNNSGSVVV------KADKKLLTVLFPDGRDGRAFTLKA 172 (740)
Q Consensus 100 ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L-~~i~l~~s~sv~~------~~~Kk~~F~I~~~~~dgrty~fqA 172 (740)
.+|.||||||+.+.|.|.+++.+..+.- -+.++. -.........+.+ ...-++.|.|... +|++.|.|
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~--v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~~ 290 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPLD--IIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCG---NRSIRLRT 290 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCceeE--EEEEecccccccCCCcceeecccccccCCCcceEEEecC---ceEEEEEE
Confidence 4699999999999999998876553211 000110 0000000111111 1123556777654 68899999
Q ss_pred cChhhHHHHHHHHHHHHhc
Q 004638 173 ESLEDLYDWKTALENALAQ 191 (740)
Q Consensus 173 dSeeE~~~WI~AI~~ai~~ 191 (740)
.+...+..|+.+|+.+...
T Consensus 291 ~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 291 KSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999998743
No 121
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.00 E-value=0.016 Score=67.12 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=32.3
Q ss_pred CCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 151 ~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
..++.|.+.. ++|+.|.|+|.+++++..||.+|+.+++
T Consensus 453 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 3567776664 4799999999999999999999999884
No 122
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=95.93 E-value=0.0034 Score=71.18 Aligned_cols=94 Identities=24% Similarity=0.336 Sum_probs=62.2
Q ss_pred eEEEeeeEeeecCC---CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCcee-Ee--c---CCce
Q 004638 84 VFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VK--A---DKKL 154 (740)
Q Consensus 84 v~KeGyL~l~kkg~---~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~-~~--~---~Kk~ 154 (740)
-..|| .+++|++ +.|.|+.|||+|.+..|.|.|....... .-..|+++...+|. +. . .=+.
T Consensus 735 p~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpK 804 (851)
T KOG3723|consen 735 PLIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPK 804 (851)
T ss_pred chhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccch
Confidence 46688 4444433 6789999999999999999775432211 01223444433331 11 1 1123
Q ss_pred EEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 155 ~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
.|+|++. +.+|.|.|.++...++|++-|+=+++
T Consensus 805 AFEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 805 AFEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred hhheeec---CceEEeecccccCHHHHHHHHHHHHH
Confidence 5777765 47799999999999999999988774
No 123
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.92 E-value=0.0032 Score=74.10 Aligned_cols=95 Identities=23% Similarity=0.368 Sum_probs=66.9
Q ss_pred EEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCC
Q 004638 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (740)
Q Consensus 85 ~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~d 164 (740)
.-.|||+..=|. -..|+|.|.|.+.-+|+|||+..+..+.. .++|-++.+..... .....|-+.|.+..+
T Consensus 925 qLsg~Llrkfkn--ssgwqkLwvvft~fcl~fyKS~qD~~~la----slPlLgysvs~P~~-~d~i~K~~vfkl~fk--- 994 (1036)
T KOG3531|consen 925 QLSGYLLRKFKN--SSGWQKLWVVFTNFCLFFYKSHQDSEPLA----SLPLLGYSVSIPAE-PDPIQKDYVFKLKFK--- 994 (1036)
T ss_pred hhhHHHHHHhhc--cccceeeeeeecceeeEeecccccccccc----cccccccccCCCCC-CCCcchhheeeeehh---
Confidence 456766543332 25899999999999999999887764322 22333344332211 123468888888876
Q ss_pred CceEEEEecChhhHHHHHHHHHHHH
Q 004638 165 GRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 165 grty~fqAdSeeE~~~WI~AI~~ai 189 (740)
..+|+|.|++.--.+.|+..|+.+-
T Consensus 995 ~hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 995 SHVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred hhHHHHhhhhhhhhhhHHHHhhcCC
Confidence 5789999999999999999999864
No 124
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=95.70 E-value=0.13 Score=48.49 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=53.9
Q ss_pred EEe-eeEeeecCC---CCCCceeEEEEEeCC--eEEEeccCCCCCCCC-CccceeecCCeeecCCCceeEe----cCCce
Q 004638 86 KSG-PLFISSKGI---GWTSWKKRWFILTHT--SLVFFRSDPSAIPQK-GSEVNLTLGGIDLNNSGSVVVK----ADKKL 154 (740)
Q Consensus 86 KeG-yL~l~kkg~---~~ksWkKRwfVL~~~--~L~yyKd~~~~~~~~-g~e~~i~L~~i~l~~s~sv~~~----~~Kk~ 154 (740)
+.| |||+..+++ .....++|||-|... +|+++...+...... +..-.+.+..+..-........ ..-.+
T Consensus 10 ~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~ 89 (123)
T PF12814_consen 10 MIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNK 89 (123)
T ss_pred hcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccce
Confidence 344 677644332 245899999999976 555555332111110 0001122222111111111000 01233
Q ss_pred EEEEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 155 ~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
+|.|.. ++|+.-|-|.+.++.+-|+.+|+..+
T Consensus 90 si~i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 90 SIIIVT---PDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred EEEEEc---CCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 444443 36999999999999999999999766
No 125
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.69 E-value=0.08 Score=47.12 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=52.1
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecC-CCceeEecCCceEEEEEecC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN-SGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~-s~sv~~~~~Kk~~F~I~~~~ 162 (740)
|.+.|.+ .++.+. .|++|=++|++.--.||-|+.... .-+.|.+.. ...+... ....|.|.+.
T Consensus 1 Il~~g~v--~Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~--~~~~F~I~Tp- 64 (89)
T cd01262 1 ILKIGAV--KKRKGL--FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVK--NSSHFFVHTP- 64 (89)
T ss_pred Cceeeee--eehhcc--ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEe--cCccEEEECC-
Confidence 3577844 344332 789999999998666665554331 112333333 2222222 2234555544
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHH
Q 004638 163 RDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 163 ~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
+|+|+|. +.......|+.+|..+
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHH
Confidence 7999995 5568999999999875
No 126
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=95.18 E-value=0.023 Score=63.64 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=65.8
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecC
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~ 162 (740)
.+...|+| .+-......|+.||++|+.+.|.||++.... ..|+.-++.|....+... +.....|.|...
T Consensus 23 w~e~~G~l--skwtnyi~gwqdRyv~lk~g~Lsyykse~E~--~hGcRgsi~l~ka~i~ah------EfDe~rfdIsvn- 91 (611)
T KOG1739|consen 23 WVERCGVL--SKWTNYIHGWQDRYVVLKNGALSYYKSEDET--EHGCRGSICLSKAVITAH------EFDECRFDISVN- 91 (611)
T ss_pred chhhccee--eeeecccccccceEEEEcccchhhhhhhhhh--hcccceeeEeccCCcccc------cchhheeeeEec-
Confidence 36678844 4444445799999999999999999987654 245555555555554432 233445677665
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHH
Q 004638 163 RDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 163 ~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
....++.|.+...++.|+.+|.-.
T Consensus 92 --~nv~~lra~~~~hr~~w~d~L~wm 115 (611)
T KOG1739|consen 92 --DNVWYLRAQDPDHRQQWIDALEWM 115 (611)
T ss_pred --cceeeehhcCcHHHHHHHHHHHHH
Confidence 467899999999999999999854
No 127
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.08 E-value=0.13 Score=52.02 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.8
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSD 120 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~ 120 (740)
+.|+||.+.++. ..|+++|+||..+.|+.|..-
T Consensus 1 ~sG~LY~K~~kh--s~F~~~~vvL~~G~Li~f~~~ 33 (185)
T PF15404_consen 1 MSGYLYQKPRKH--STFKKYFVVLIPGFLILFQLF 33 (185)
T ss_pred CCceeeecCCCC--CCceEEEEEEeCCEEEEEEEE
Confidence 479999776654 699999999999999999863
No 128
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=94.92 E-value=0.00064 Score=84.92 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=71.5
Q ss_pred eEEEeeeEee------ecCCCCCCceeEEEEEeCCeEEEeccCCCCCC----CCCccceeecCCeeecCCCceeEecCCc
Q 004638 84 VFKSGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP----QKGSEVNLTLGGIDLNNSGSVVVKADKK 153 (740)
Q Consensus 84 v~KeGyL~l~------kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~----~~g~e~~i~L~~i~l~~s~sv~~~~~Kk 153 (740)
...+|+||.+ .+..+.++|.+.||++..+.+.||||.+.... ...++..+.+..+.+... +....|+
T Consensus 2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a---~dy~kkk 2375 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVA---SDYHKKK 2375 (2473)
T ss_pred HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHH---HHHHHHh
Confidence 5789999863 34556899999999999999999999875532 122333333333322211 1223566
Q ss_pred eEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 154 ~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
+.|.+. ..+|..|.|+|.++++|..|++++..++.
T Consensus 2376 ~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2376 HVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred Hhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 666655 56899999999999999999999987764
No 129
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.83 E-value=0.52 Score=44.07 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=59.6
Q ss_pred eEEEeeeEeeecCC-CCCCceeEEEEEeCCeEEEeccCCCCCCCCCcc----ceeecCCeeecCCCceeEecCCceEEEE
Q 004638 84 VFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSE----VNLTLGGIDLNNSGSVVVKADKKLLTVL 158 (740)
Q Consensus 84 v~KeGyL~l~kkg~-~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e----~~i~L~~i~l~~s~sv~~~~~Kk~~F~I 158 (740)
.+++|.+.+..... ..+.=+.|-+-|=...|+|.|-..+......+. -.+.+..+.+... ..+..++|.|
T Consensus 5 Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~-----v~gd~~kF~i 79 (114)
T cd01232 5 LLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEH-----VEGDPCRFAL 79 (114)
T ss_pred eEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEc-----cCCCCceEEE
Confidence 55666555433221 123335566666777788888643321101111 1233333333321 2345677888
Q ss_pred EecCCC--CceEEEEecChhhHHHHHHHHHHHH
Q 004638 159 FPDGRD--GRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 159 ~~~~~d--grty~fqAdSeeE~~~WI~AI~~ai 189 (740)
....++ ..+|.+||.|.+....|+..|+.++
T Consensus 80 ~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 80 WSGDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred EeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 876654 4789999999999999999999876
No 130
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.74 E-value=0.33 Score=46.10 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=56.3
Q ss_pred eEEEeeeEeeecCC------CCCCceeEEEEEeCCeEEEeccCCCCCCCCCcccee----ecCCeeecCCCcee------
Q 004638 84 VFKSGPLFISSKGI------GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL----TLGGIDLNNSGSVV------ 147 (740)
Q Consensus 84 v~KeGyL~l~kkg~------~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i----~L~~i~l~~s~sv~------ 147 (740)
.+|.|.|.....++ ...+-+.+|+.|-.+.|.|.|...+. .+.+ ....+.+.......
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~------~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS------TFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC------eEEEEeeccccceEEeeccccccccccc
Confidence 46788666543221 12245678999999999999854321 1211 12222222211100
Q ss_pred -EecCCceEEEEEecC-CCC--ceEEEEecChhhHHHHHHHHH
Q 004638 148 -VKADKKLLTVLFPDG-RDG--RAFTLKAESLEDLYDWKTALE 186 (740)
Q Consensus 148 -~~~~Kk~~F~I~~~~-~dg--rty~fqAdSeeE~~~WI~AI~ 186 (740)
.....++.|.++.-. ..| +.+.|+|+|+.|+..||+||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 001346778876532 234 569999999999999999984
No 131
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.73 E-value=0.32 Score=45.06 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=56.1
Q ss_pred eEEEeeeEeeecCCCCCCc-eeEEEEEeCCeEEEeccCCCCCCCCCccc----eeecCCeeecCCCceeEe---cCCceE
Q 004638 84 VFKSGPLFISSKGIGWTSW-KKRWFILTHTSLVFFRSDPSAIPQKGSEV----NLTLGGIDLNNSGSVVVK---ADKKLL 155 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksW-kKRwfVL~~~~L~yyKd~~~~~~~~g~e~----~i~L~~i~l~~s~sv~~~---~~Kk~~ 155 (740)
.+.+|=|.+... .+.| +.|+|-|=++.|+|.|...- ++..+ .+.+..+.+.....=... ..-++.
T Consensus 2 li~~Gel~~~s~---~~g~~q~R~~FLFD~~LI~CKkd~~----r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~kna 74 (109)
T cd01224 2 LFLQGEATRQKQ---NKGWNSSRVLFLFDHQMVLCKKDLI----RRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNS 74 (109)
T ss_pred ceEeeeEEEEec---ccCCcccEEEEEecceEEEEecccc----cCCcEEEEEEEEcccEEEEECCCCccccCCceeEEE
Confidence 356774444332 1233 57888999999999995421 11111 133344443332100000 012566
Q ss_pred EEEEecCCCCceEEEEecChhhHHHHHHHHHH
Q 004638 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 156 F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ 187 (740)
|.|....+ +..|.|+|.|.++...||.|+..
T Consensus 75 fkl~~~~~-~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 75 LKIYSEST-DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEcCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence 77776533 46799999999999999999864
No 132
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=94.29 E-value=0.015 Score=66.40 Aligned_cols=35 Identities=14% Similarity=0.387 Sum_probs=30.3
Q ss_pred ceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 153 k~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.+||.|+.. .|.++.|.|.+-+|+..||+||+..|
T Consensus 445 de~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqI 479 (749)
T KOG0705|consen 445 DECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQI 479 (749)
T ss_pred cceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHH
Confidence 358888765 47899999999999999999999877
No 133
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=94.29 E-value=0.089 Score=62.66 Aligned_cols=97 Identities=20% Similarity=0.368 Sum_probs=63.3
Q ss_pred eEEEeeeEeeecC--------CCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEe-----c
Q 004638 84 VFKSGPLFISSKG--------IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK-----A 150 (740)
Q Consensus 84 v~KeGyL~l~kkg--------~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~-----~ 150 (740)
+...|+||..-.. ....--.++||||-++.|+||.+.+...|- +.|.++...++.+. .
T Consensus 492 ~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~---------~lI~~~Eivclav~~pd~~p 562 (1186)
T KOG1117|consen 492 TFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN---------GLININEIVCLAVHPPDTYP 562 (1186)
T ss_pred ccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC---------ceeeccceEEEeecCCCCCC
Confidence 4445999973211 123456899999999999999988766442 22222222222111 1
Q ss_pred CCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 151 ~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.-.+.|.+..-...+|.|+|-+++.+.+..|..+|...-
T Consensus 563 n~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf 601 (1186)
T KOG1117|consen 563 NTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHF 601 (1186)
T ss_pred CcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhc
Confidence 224445555445568999999999999999999998764
No 134
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=94.00 E-value=0.012 Score=67.14 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhcccCCCccchhhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 004638 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (740)
Q Consensus 357 l~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~ 436 (740)
++||..|+.+.....|.+.|||+||||+|+|.++......+. .-|+ .|........-++++++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~---~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSH---LWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhcc---cccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 368999999999999999999999999999977421111110 0022 2333334444567888999999998
Q ss_pred CC
Q 004638 437 EG 438 (740)
Q Consensus 437 ~~ 438 (740)
..
T Consensus 72 ~~ 73 (670)
T KOG1449|consen 72 PT 73 (670)
T ss_pred Cc
Confidence 43
No 135
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=93.23 E-value=0.094 Score=60.29 Aligned_cols=102 Identities=17% Similarity=0.273 Sum_probs=64.9
Q ss_pred CCceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCce-eEecCCceEEEEE
Q 004638 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV-VVKADKKLLTVLF 159 (740)
Q Consensus 81 ~~~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv-~~~~~Kk~~F~I~ 159 (740)
++..+|||.|++..-+ ..+-..||++|=++.+.|.+-.... + +..+.... .|.+...... .+.....+.|.++
T Consensus 269 sreLiKEG~l~Kis~k--~~~~qeRylfLFNd~~lyc~~r~~~-~--~~k~~~r~-~~s~~~~~v~~~~~~~~~~tF~~~ 342 (623)
T KOG4424|consen 269 SRELIKEGQLQKISAK--NGTTQERYLFLFNDILLYCKPRKRL-P--GSKYEVRA-RCSISHMQVQEDDNEELPHTFILT 342 (623)
T ss_pred HHHHhhccceeeeecc--CCCcceeEEEEehhHHHhhhhhhhc-c--cceeccce-eeccCcchhcccccccCCceEEEe
Confidence 3458999976654433 4688999999999988888865422 1 11111111 1111111000 1223445667776
Q ss_pred ecCCCCceEEEEecChhhHHHHHHHHHHHHhc
Q 004638 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (740)
Q Consensus 160 ~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~ 191 (740)
-. .|..-|+|.|+++-++|+++|+.+|..
T Consensus 343 G~---~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 GK---KRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred cc---cceEEeecCchhhHHHHHHHHHHHHHH
Confidence 43 478999999999999999999999963
No 136
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=93.20 E-value=0.29 Score=44.47 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=49.2
Q ss_pred CCCceeEEEEEeC----CeEEEecc--CCCCCCCCCccceeecCC-eeecCCCceeEecCCceEEEEEecCCCCceEEEE
Q 004638 99 WTSWKKRWFILTH----TSLVFFRS--DPSAIPQKGSEVNLTLGG-IDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLK 171 (740)
Q Consensus 99 ~ksWkKRwfVL~~----~~L~yyKd--~~~~~~~~g~e~~i~L~~-i~l~~s~sv~~~~~Kk~~F~I~~~~~dgrty~fq 171 (740)
...|+|.-.+|++ ..|.||-- ++...|..+ +.... .+++.++.+ .-.++.+.|++... ++..|.|.
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~----v~C~~I~EvR~tt~L-EmPD~~nTFvLK~~--~~~eyI~E 90 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQ----VACSSISEVRECTRL-EMPDNLYTFVLKVD--DNTDIIFE 90 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCccc----cchhhhhhhhhcccc-cccCcccEEEEEec--CCceEEEE
Confidence 3577777777752 24666654 333333221 11111 112222221 12367778888765 56789999
Q ss_pred ecChhhHHHHHHHHHH
Q 004638 172 AESLEDLYDWKTALEN 187 (740)
Q Consensus 172 AdSeeE~~~WI~AI~~ 187 (740)
|.++++++.|+..|+.
T Consensus 91 a~d~~q~~SWla~Ir~ 106 (107)
T cd01231 91 VGDEQQLNSWLAELRY 106 (107)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999975
No 137
>PF15406 PH_6: Pleckstrin homology domain
Probab=93.08 E-value=0.17 Score=46.50 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=40.5
Q ss_pred EEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCCceEEEEecChhhHHHHHHHH
Q 004638 106 WFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTAL 185 (740)
Q Consensus 106 wfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI 185 (740)
|-.-+|.-|.||-...+...+ -+.|.|...+.+......+ |.|... |..++|+|.+..||..||.+|
T Consensus 43 wAsqTGKGLLF~~K~~dka~P--------~GiinLadase~~~~g~~k--F~f~~~---G~khtF~A~s~aERD~Wv~~l 109 (112)
T PF15406_consen 43 WASQTGKGLLFFSKAEDKASP--------SGIINLADASEPEKDGSNK--FHFKIK---GHKHTFEAASAAERDNWVAQL 109 (112)
T ss_pred hhhccCceEEEEeccccccCC--------cceEehhhccccccCCCce--EEEEeC---CceeeeecCCHHHhccHHHHh
Confidence 333455555555433333222 2334444443332223344 445544 888999999999999999998
Q ss_pred HH
Q 004638 186 EN 187 (740)
Q Consensus 186 ~~ 187 (740)
..
T Consensus 110 k~ 111 (112)
T PF15406_consen 110 KA 111 (112)
T ss_pred hc
Confidence 63
No 138
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.06 E-value=0.39 Score=43.26 Aligned_cols=88 Identities=16% Similarity=0.261 Sum_probs=55.0
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCC--CC-CCCCccceeecCCeeecCCCceeEecCCceEEEEEe
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPS--AI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~--~~-~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~ 160 (740)
.+++|+|.....| .=|.|-|-|=++-|+|-+-... .. .......-++|..+.+... .|.+.
T Consensus 3 Lv~eg~lvel~~~----~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------~~~~~- 66 (96)
T cd01228 3 LVKDSFLVELVEG----SRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------PFRIH- 66 (96)
T ss_pred ccccceeeeehhC----CCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------hhhcc-
Confidence 5688966654433 3366777777787887664311 11 1122233456665554432 13332
Q ss_pred cCCCCceEEEEecChhhHHHHHHHHHHH
Q 004638 161 DGRDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 161 ~~~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
.+++++|+|.|.|..|+.+|+.+|...
T Consensus 67 -~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 67 -NKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred -ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 446899999999999999999999764
No 139
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.64 E-value=0.72 Score=43.18 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=50.8
Q ss_pred ceeEEEEEeCCeEEEeccCCCCCCCCCccce----eecCCeeecCCCceeEec--C--CceEEEEEecCCCC-ceEEEEe
Q 004638 102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKA--D--KKLLTVLFPDGRDG-RAFTLKA 172 (740)
Q Consensus 102 WkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~----i~L~~i~l~~s~sv~~~~--~--Kk~~F~I~~~~~dg-rty~fqA 172 (740)
=+.||.-|=+..+++.|...+.. ..+++. +.+..+.|..... .... . -++.|.|... +| ..|+|+|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~-~d~~~~~~~~~~~f~L~~~--~~~~~~~f~~ 94 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPS-RDTEGRDTRWKYGFYLAHK--QGKTGFTFYF 94 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCc-cCcccCCcceEEEEEEEec--CCCccEEEEe
Confidence 35888888888899998654321 112221 2223322222110 0111 2 2345666543 33 6799999
Q ss_pred cChhhHHHHHHHHHHHHhc
Q 004638 173 ESLEDLYDWKTALENALAQ 191 (740)
Q Consensus 173 dSeeE~~~WI~AI~~ai~~ 191 (740)
.|+++.+.||.||.-|+..
T Consensus 95 Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 95 KTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999998853
No 140
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.59 E-value=0.038 Score=63.26 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=110.3
Q ss_pred CCccccChhHhhh-cCCCCcH-HHHHHHHHHHH---hC--CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcchhh
Q 004638 227 FPVIGRPILLALE-DVDGTPS-FLEKAIRFIEE---HG--VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIA 299 (740)
Q Consensus 227 ~~vFGvpL~~~~~-~~~~VP~-~l~~~i~~Le~---~G--l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA 299 (740)
...||.-|..+.- .+..||. .+.+||..+.. ++ ....|.|+++.+.... .+...|....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 3445544433322 2556777 77777766665 22 4455777776542111 1122344456899999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccch
Q 004638 300 DCVKYVIRELPSSPVPASCCNALLEARRTDR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV 377 (740)
Q Consensus 300 slLK~fLReLPePLlp~~l~~~~i~~~~~~~--~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NL 377 (740)
.+++.|+|.+|.|+.. .++...+ .+.+...+..+ ...++.|+.+-.+|..||...+.-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~-~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSL-ETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc--------cccccccCcccceeeecccc-ccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999543 2333333 55666666544 4899999999999999998877633 899
Q ss_pred hhhhcccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 004638 378 AACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 378 AivFaP~Llrp~~~~~~~~e~~~~~~g~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~~~ 438 (740)
+|++.|+++|++.+ ++. +++-+-. ..+....++.+.|++....|..+
T Consensus 343 ~I~~~~~~~r~ppt----L~~-~~~h~~~---------~~~~~~~~~~~~~e~s~~~~~~~ 389 (670)
T KOG1449|consen 343 AIVWSPNLFRPPPT----LNG-ADTHLLS---------GLNVHTAICDFFIENSESLFVND 389 (670)
T ss_pred eeecCCCCCCCCCC----CCc-hhhhhcc---------cCCcceeecccchhhhhhhhhcc
Confidence 99999999998742 111 1111100 11123345778888888888754
No 141
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=91.88 E-value=0.51 Score=45.42 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHH
Q 004638 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 151 ~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
...|.|.|..-++.|..|+|.|+|..+++.|++.|..+
T Consensus 97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 44556777767788888999999999999999999764
No 142
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.32 E-value=3.5 Score=39.65 Aligned_cols=82 Identities=12% Similarity=0.263 Sum_probs=51.2
Q ss_pred eeEEEEEeCCeEEEeccCCCCCCCCC-ccc----eeecCCeeecCCCceeEecCCceEEEEEecCCCCceEEEEecChhh
Q 004638 103 KKRWFILTHTSLVFFRSDPSAIPQKG-SEV----NLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLED 177 (740)
Q Consensus 103 kKRwfVL~~~~L~yyKd~~~~~~~~g-~e~----~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dgrty~fqAdSeeE 177 (740)
+.|++-|=...+.|.|-..+.....+ +.+ .+.+..+.+... ..+...+|.|....+. ..|.+||.|.+.
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~-----v~gd~~kFeiw~~~~~-~~yilqA~t~e~ 103 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITEN-----VKGDTKKFEIWYNARE-EVYILQAPTPEI 103 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeeccccccc-----CCCCccEEEEEeCCCC-cEEEEEcCCHHH
Confidence 46777777888888886532211001 111 122233333321 1234567888776554 689999999999
Q ss_pred HHHHHHHHHHHHh
Q 004638 178 LYDWKTALENALA 190 (740)
Q Consensus 178 ~~~WI~AI~~ai~ 190 (740)
...|+..|...+.
T Consensus 104 K~~Wv~~I~~iL~ 116 (133)
T cd01227 104 KAAWVNEIRKVLT 116 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998873
No 143
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=89.70 E-value=0.69 Score=50.35 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=69.0
Q ss_pred CCceEEEeeeEeeecCC-CCCCceeEEEEEeCCeEEEeccCCCCC-CCCCccceeecCC--eeecCCCceeEecCCceEE
Q 004638 81 GNAVFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGG--IDLNNSGSVVVKADKKLLT 156 (740)
Q Consensus 81 ~~~v~KeGyL~l~kkg~-~~ksWkKRwfVL~~~~L~yyKd~~~~~-~~~g~e~~i~L~~--i~l~~s~sv~~~~~Kk~~F 156 (740)
+.+++.-||..-..++. .+.+++.||..|+|.+++.|..++-.. .+...+....+.. |.+-.. ....+.+++||
T Consensus 278 ~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd--sd~~D~R~~CF 355 (505)
T KOG3549|consen 278 GEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD--SDTVDSRQHCF 355 (505)
T ss_pred cceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc--ccccccccceE
Confidence 44689999655444443 567889999999999999998765321 1112222211111 111110 01124689999
Q ss_pred EEEecCCCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 157 ~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.+... .|...+|..+...|+..|-.+.+.|+
T Consensus 356 ~~qs~--~ge~~yfsVEl~seLa~wE~sfq~At 386 (505)
T KOG3549|consen 356 LLQSS--GGEPRYFSVELRSELARWENSFQAAT 386 (505)
T ss_pred EEEcC--CCCceEEEEehhhHHHHHHHHHhhHH
Confidence 98865 57789999999999999999999876
No 144
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.39 E-value=2.2 Score=39.59 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=53.9
Q ss_pred ceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCCceEEEEecChhhHHHH
Q 004638 102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDW 181 (740)
Q Consensus 102 WkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~W 181 (740)
=..||++|-...|.+..-..... .-.-.-.++|.++.++.-. ..+..++.|.|.-. ---...+.|.+.+|+.+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lE---d~e~~~~aFeI~G~--li~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLE---DTEALKNAFEISGP--LIERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechH---hccCccceEEEecc--CcCcEEEEeCCHHHHHHH
Confidence 46899999999998887643221 0011122566777766421 23356778888743 323578888899999999
Q ss_pred HHHHHHHH
Q 004638 182 KTALENAL 189 (740)
Q Consensus 182 I~AI~~ai 189 (740)
+..|+..+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998754
No 145
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=88.25 E-value=3.3 Score=37.87 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=46.6
Q ss_pred eeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCCceEEEEecChhhHHHHH
Q 004638 103 KKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWK 182 (740)
Q Consensus 103 kKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI 182 (740)
++..+-|=++.|.|-.-.... ...-.-.+.|..+.+... .+...-+.+|.|.+. .+.+.+||+|.++..+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni---~D~~~~kNafki~t~---~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNV---KDRENAKKVLKLLIF---PESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEec---CCCcCcCceEEEEeC---CccEEEEeCCHHHHHHHH
Confidence 445455666666665432111 111112234444443221 122345667877765 578999999999999999
Q ss_pred HHHHHHH
Q 004638 183 TALENAL 189 (740)
Q Consensus 183 ~AI~~ai 189 (740)
..|..+.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999875
No 146
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=86.43 E-value=0.012 Score=64.03 Aligned_cols=81 Identities=26% Similarity=0.467 Sum_probs=58.4
Q ss_pred CCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCce-eEecCCceEEEEEecCCCCceEEEEecChhhH
Q 004638 100 TSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV-VVKADKKLLTVLFPDGRDGRAFTLKAESLEDL 178 (740)
Q Consensus 100 ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv-~~~~~Kk~~F~I~~~~~dgrty~fqAdSeeE~ 178 (740)
..|++.|||++...+-||.+....... -..+.++++.++.+ .+...+.+.|.|... |..|+|.|.+...+
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~------~L~~~~~LR~C~~v~e~a~q~nY~~~i~~~---~~~~tL~~~~s~Ir 103 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEAD------ELDGEIDLRSCTDVTEYAVQRNYGFQIHTK---DAVYTLSAMTSGIR 103 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc------cCCccccHHHHHHHHHHHHHhccceeeccc---chhhhhHHHHHHHH
Confidence 579999999999999999986533111 11233455544433 112357777888765 67899999999999
Q ss_pred HHHHHHHHHHH
Q 004638 179 YDWKTALENAL 189 (740)
Q Consensus 179 ~~WI~AI~~ai 189 (740)
..|+.|+....
T Consensus 104 ~~~~~A~~kT~ 114 (593)
T KOG4807|consen 104 RNWIEALRKTV 114 (593)
T ss_pred HHHHHHHHhcc
Confidence 99999999765
No 147
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=86.41 E-value=0.51 Score=57.08 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=56.4
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
...+||| .+.....+.|.+|||+|.++.|.||++........+++...... .+. ......+. ...+.
T Consensus 77 ~~~~g~l--~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a--~i~--------~~~~~~~~-~~~~~ 143 (799)
T KOG1737|consen 77 ASLEGIL--LKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTA--WIQ--------NGERMDIC-SVDGS 143 (799)
T ss_pred cccccee--eccccccCCcccceEEecCcceeeeccCCccccCCCCccccccc--ccc--------cCCCcccc-hhhcc
Confidence 4567844 45555678999999999999999999876543222222211111 111 11221112 22222
Q ss_pred CCceEEEEecChhhHHHHHHHHHHH
Q 004638 164 DGRAFTLKAESLEDLYDWKTALENA 188 (740)
Q Consensus 164 dgrty~fqAdSeeE~~~WI~AI~~a 188 (740)
-..|+..+.+...+..|+.++..+
T Consensus 144 -~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 -CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred -cchhhhhhhHHHhhcchhhhhhhc
Confidence 356889999999999999999876
No 148
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=80.06 E-value=2.5 Score=37.82 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHH------HHhhHHHHHhhhc-CC
Q 004638 689 RLALENDVARLKDQLQ------KERDKRTAMEAGL-GE 719 (740)
Q Consensus 689 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~ 719 (740)
...|+++.++|||||. +||==|.||++|| .|
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ei 41 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEI 41 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3568888999999985 6999999999999 44
No 149
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=79.70 E-value=0.86 Score=51.61 Aligned_cols=30 Identities=13% Similarity=-0.069 Sum_probs=26.7
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCe
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTS 113 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~ 113 (740)
.+|.|+++.+..+.+.+.|.++|++|.++.
T Consensus 8 ~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs 37 (429)
T KOG4047|consen 8 LVKDGVPDNHRNKFKVKNVRDDGAELGSGS 37 (429)
T ss_pred ccccCccchhhhhhccccccccceeeeccc
Confidence 679999999888878899999999999874
No 150
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=79.04 E-value=0.39 Score=56.01 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=39.5
Q ss_pred eEEEeeeEeeecCC-CCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCC
Q 004638 84 VFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS 143 (740)
Q Consensus 84 v~KeGyL~l~kkg~-~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s 143 (740)
-..+||||+.|... +...|+|.||||.+..|+.|.......+ +..+.|-...|..+
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~----e~~i~l~~~~i~~a 618 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAA----ESVIKLPLFTISVA 618 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhch----hheeeccchhhhhH
Confidence 45788999877654 4568999999999999999998776532 33344444444443
No 151
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.10 E-value=4.8 Score=44.05 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=44.3
Q ss_pred hhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-hhHHHHHhh
Q 004638 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHE-------RRLALENDVARLKDQLQKE-RDKRTAMEA 715 (740)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 715 (740)
.++....|+.|..+|+-.+-.+|++|.||++.|.+ -+.+|||.+..||++.--= +..|.|||-
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 45667789999999999999999999999887765 4555666666666554311 223446653
No 152
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.40 E-value=0.41 Score=55.02 Aligned_cols=87 Identities=15% Similarity=0.316 Sum_probs=54.9
Q ss_pred CCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCCCCceEEEEecChhhH
Q 004638 99 WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDL 178 (740)
Q Consensus 99 ~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~dgrty~fqAdSeeE~ 178 (740)
.|..+|+||.++.-.+.+|++..+.. ..+-..+.+.+|.+.+...+.- .+-..|.+.+.......+++.|++++..
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~--~k~~i~l~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQ--QKYAIKLLVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCcccccc--ccceEEEEeecCCccceeEEecCCHHHH
Confidence 46667777766665555554432221 2223446677888776544332 3333444555444467899999999999
Q ss_pred HHHHHHHHHHH
Q 004638 179 YDWKTALENAL 189 (740)
Q Consensus 179 ~~WI~AI~~ai 189 (740)
..||.|.+-|.
T Consensus 448 A~WMAaCrLAS 458 (664)
T KOG3727|consen 448 ARWMAACRLAS 458 (664)
T ss_pred HHHHHHhhHhh
Confidence 99999998764
No 153
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=74.22 E-value=2.5 Score=46.81 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=62.7
Q ss_pred ceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCC-CCCCccceeecCCeeecCCC--ceeEecCCceEEEEE
Q 004638 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSG--SVVVKADKKLLTVLF 159 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~-~~~g~e~~i~L~~i~l~~s~--sv~~~~~Kk~~F~I~ 159 (740)
.|..-|||-.+-.+.+.+.|+.-+++|+...|.+|..-+-.. .+..+-...+|-.-.+..++ +-.+..+-...|...
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~R 370 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATR 370 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEe
Confidence 466778776666666778999999999999999998754321 11111111111110111110 001111222346665
Q ss_pred ecCCCC-ceEEEEecChhhHHHHHHHHHH
Q 004638 160 PDGRDG-RAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 160 ~~~~dg-rty~fqAdSeeE~~~WI~AI~~ 187 (740)
+.++.| .+|+|.++|-.|+..|...|-.
T Consensus 371 tGTrqGV~thlfrvEThrdLa~WtRslVq 399 (506)
T KOG3551|consen 371 TGTRQGVETHLFRVETHRELAAWTRSLVQ 399 (506)
T ss_pred cccccceEEEEEEeccHHHHHHHHHHHHH
Confidence 555555 6899999999999999988753
No 154
>PF15411 PH_10: Pleckstrin homology domain
Probab=68.67 E-value=55 Score=30.75 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=58.7
Q ss_pred EEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCC---------CCccceeec-CCeeecCCCceeEec-CCc
Q 004638 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ---------KGSEVNLTL-GGIDLNNSGSVVVKA-DKK 153 (740)
Q Consensus 85 ~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~---------~g~e~~i~L-~~i~l~~s~sv~~~~-~Kk 153 (740)
...|-+.+.+. ..|+-++|-|=...|.++|..+..... ....-.+.| +.|-+...+.+.... ...
T Consensus 8 ll~g~~~V~k~----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~ 83 (116)
T PF15411_consen 8 LLHGTLTVGKD----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGS 83 (116)
T ss_pred EEccEEEEEeC----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCc
Confidence 34454444432 579999999999999999976544221 111222333 445555555543222 223
Q ss_pred eEEEEEec-CCCCceEEEEecChhhHHHHHHHH
Q 004638 154 LLTVLFPD-GRDGRAFTLKAESLEDLYDWKTAL 185 (740)
Q Consensus 154 ~~F~I~~~-~~dgrty~fqAdSeeE~~~WI~AI 185 (740)
+.-.|... ...-..|+|...+++.|+.|-++|
T Consensus 84 ~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 84 YSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred eEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 34444442 223457999999999999998875
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.99 E-value=11 Score=42.86 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=60.9
Q ss_pred hhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcCCCCCCC
Q 004638 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSF 724 (740)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (740)
..||+.|..+..+|. ||+.=+-.|..+|.+|+.+..+-+-|.--|.++|+||+.||++-.+|-.++..-.|++
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467888888777774 5677677889999999999888888999999999999999999999988876655544
No 156
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=65.50 E-value=39 Score=32.95 Aligned_cols=83 Identities=14% Similarity=0.302 Sum_probs=50.7
Q ss_pred EEEEEeCCeEEEeccCCCCCCCC-C--------------ccceeecCCeeecCCCceeEecCCceEEEEEe-----cCCC
Q 004638 105 RWFILTHTSLVFFRSDPSAIPQK-G--------------SEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP-----DGRD 164 (740)
Q Consensus 105 RwfVL~~~~L~yyKd~~~~~~~~-g--------------~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~-----~~~d 164 (740)
--||.+.--.++||+.......- + -...++.....++.... ...+..+.++|+. .+++
T Consensus 52 ~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~--ad~e~~~vwEliH~kSe~egRp 129 (160)
T cd01255 52 MCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSA--ADMESNFLWELIHLKSELEGRP 129 (160)
T ss_pred EEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCC--cCcccceEEEEEeecccccCCC
Confidence 45777777777777654221110 0 00112333344443322 1234566666664 3457
Q ss_pred CceEEEEecChhhHHHHHHHHHHHH
Q 004638 165 GRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 165 grty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.++|.||+.+.+-.+..+++|++.+
T Consensus 130 E~vfqLCcS~~E~k~~flK~Irsil 154 (160)
T cd01255 130 EKVFVLCCSTAESRNAFLKTIRSIL 154 (160)
T ss_pred cceEEEecCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999987
No 157
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=64.94 E-value=8.6 Score=44.89 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=59.5
Q ss_pred EEeeeEeeecCCCCCCceeEEEEEeCC---eEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecC
Q 004638 86 KSGPLFISSKGIGWTSWKKRWFILTHT---SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (740)
Q Consensus 86 KeGyL~l~kkg~~~ksWkKRwfVL~~~---~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~ 162 (740)
..++|.+...+ .+.|++.||+.-.. .++.|-.+.+.... -.+++-+|.+...+.+ -..+..+.|.++..
T Consensus 499 ~~s~l~~~~~~--~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~----~~iPl~~~~v~~pe~~-~~~D~~~~~k~~~s- 570 (623)
T KOG4424|consen 499 ICSHLKYMEAA--GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQ----ATIPLPGVEVTIPEFV-RREDLFHVFKLVQS- 570 (623)
T ss_pred ehhhHHHHhhc--CccceeeeeeccCCCCccccccCCccccccc----cccccCccccCCCccc-ccchhcchhhhhhh-
Confidence 34444444432 47999999988533 56667666553221 2355666666533221 12355555665544
Q ss_pred CCCceEEEEecChhhHHHHHHHHHHHH
Q 004638 163 RDGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 163 ~dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
...++|.|++++-.+.|+..+.-|.
T Consensus 571 --~~~~~~~a~~~q~qq~wl~~l~~A~ 595 (623)
T KOG4424|consen 571 --HLSWHLAADDEQLQQRWLEVLLLAV 595 (623)
T ss_pred --cceeeeccCCHHHHHHHHHHHHhhh
Confidence 3579999999999999999998876
No 158
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.49 E-value=25 Score=37.49 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=35.6
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHH
Q 004638 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALE 693 (740)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (740)
...++.++..-..|+.+|...-+....++..++.++++|+.||..|.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777778888888888888888888887765
No 159
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.37 E-value=1.3e+02 Score=36.97 Aligned_cols=28 Identities=50% Similarity=0.596 Sum_probs=16.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhHHHHHh
Q 004638 687 ERRLALENDV-ARLKDQLQKERDKRTAME 714 (740)
Q Consensus 687 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 714 (740)
||||+-|++- +.|..||++||.-|.+-|
T Consensus 494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee 522 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQEERKARKEEE 522 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5666666553 345667777776655544
No 160
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=62.61 E-value=18 Score=30.02 Aligned_cols=32 Identities=41% Similarity=0.547 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004638 684 ALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (740)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (740)
.|.+|--+||.+++|++..+.+-+.-|+|-|+
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999998876
No 161
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=62.27 E-value=3.3 Score=45.29 Aligned_cols=29 Identities=38% Similarity=0.751 Sum_probs=21.5
Q ss_pred ceEEEeeeEeeecCC---CCCCceeEEEEEeC
Q 004638 83 AVFKSGPLFISSKGI---GWTSWKKRWFILTH 111 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~---~~ksWkKRwfVL~~ 111 (740)
.+.|+|+|.++.+|. ++++||||||.|+.
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecCC
Confidence 389999888644332 45689999999863
No 162
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=60.99 E-value=2 Score=47.01 Aligned_cols=28 Identities=39% Similarity=0.799 Sum_probs=21.9
Q ss_pred eEEEeeeEeeecCC---CCCCceeEEEEEeC
Q 004638 84 VFKSGPLFISSKGI---GWTSWKKRWFILTH 111 (740)
Q Consensus 84 v~KeGyL~l~kkg~---~~ksWkKRwfVL~~ 111 (740)
+.|+|+|.++.+|. +++.||||||.|+.
T Consensus 283 ~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~~ 313 (313)
T cd05394 283 HLKEGEMYKRAQGRTRIGKKNFKKRWFCLTS 313 (313)
T ss_pred hhHHHHHHhhccCCCccccccchhheeecCC
Confidence 78999888766543 35689999999863
No 163
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=60.97 E-value=49 Score=38.09 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=30.0
Q ss_pred HHHhhhcch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 004638 664 IADEVKGNE-ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAM 713 (740)
Q Consensus 664 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (740)
+|.+-|.|. .||+.++|| ++|+|...++.|||+|.+.-..+
T Consensus 273 LA~~~~~~~~~~~~~~~~r---------~~~~~~~~~~~Q~Q~~~~~~~~~ 314 (659)
T KOG4140|consen 273 LAPEDNNNRKFLNKRLSER---------EFDPDIHCGVIQLQTKKPCTRSL 314 (659)
T ss_pred cchhhhhhHHHHHHHHHHh---------hhhhhhhhhhHhhccCCCcchhH
Confidence 344555554 467777765 78999999999999998765544
No 164
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=60.77 E-value=4.6 Score=47.78 Aligned_cols=90 Identities=7% Similarity=-0.079 Sum_probs=56.7
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEecCC
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~~~ 163 (740)
..+.| ++.+....+|+|+.+||++.++.+.||+.+-+. +.... +.-++|...-.. .+..++. .++.
T Consensus 259 ~s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~-~s~~~---~~~~~~s~~fql---i~~t~~~--~~~~--- 324 (936)
T KOG0248|consen 259 TSRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDI-RSVTK---LEQQGAAYAFQL---ITSTDKM--NFMT--- 324 (936)
T ss_pred hHHHH--HHHhHheeeccceEEEEEcCCCccccccCcccc-cccce---eeccchhHHhhh---hhhceeE--EEec---
Confidence 35666 334445567999999999999999999987754 22111 112233322210 0112232 2222
Q ss_pred CCceEEEEecChhhHHHHHHHHHHHH
Q 004638 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (740)
Q Consensus 164 dgrty~fqAdSeeE~~~WI~AI~~ai 189 (740)
.+|++-++...-+..||++.....
T Consensus 325 --~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 325 --ESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred --cChhhhhhhHHHHHHHHHHHhccc
Confidence 358899999999999999998754
No 165
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=60.36 E-value=12 Score=33.53 Aligned_cols=27 Identities=41% Similarity=0.713 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHH------HHHhhHHHHHhhhc
Q 004638 691 ALENDVARLKDQL------QKERDKRTAMEAGL 717 (740)
Q Consensus 691 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 717 (740)
.|...+++||+|| ++||==|.||.+||
T Consensus 7 ~I~~eI~kLqe~lk~~e~keAERigRiAlKAGL 39 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETREAERIGRIALKAGL 39 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3455677777777 47999999999999
No 166
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=59.34 E-value=3.2 Score=45.54 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=20.4
Q ss_pred ceEEEeeeEeeecCC---CCCCceeEEEEEe
Q 004638 83 AVFKSGPLFISSKGI---GWTSWKKRWFILT 110 (740)
Q Consensus 83 ~v~KeGyL~l~kkg~---~~ksWkKRwfVL~ 110 (740)
.+.|+|++..+.+|. +.+.||||||.|+
T Consensus 285 ~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 285 VVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred hhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 389999866543332 4678999999985
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.68 E-value=37 Score=35.09 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=32.4
Q ss_pred hhhhhhcchhHHHHHHHHh----hhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 004638 649 EIQRLEDTKSDLQRKIADE----VKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (740)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (740)
.+++||..-.+|+.+++.= -...+.||-.++.+++...+ |+++-++|++||+.=+.-..+|+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~----L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVING----LKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444454444321 23344566666666655444 66777777776655444444443
No 168
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=51.71 E-value=4.9 Score=44.49 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEeeeEeeecCC----CCCCceeEEEEEe
Q 004638 84 VFKSGPLFISSKGI----GWTSWKKRWFILT 110 (740)
Q Consensus 84 v~KeGyL~l~kkg~----~~ksWkKRwfVL~ 110 (740)
+.|+|+++++.+++ .+..||||||.|+
T Consensus 303 ~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 303 TVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred hhhhhHhhhccccCCCCcccccccceeeecC
Confidence 78999888776522 3346999999874
No 169
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=48.39 E-value=77 Score=31.37 Aligned_cols=63 Identities=30% Similarity=0.417 Sum_probs=47.9
Q ss_pred CchhhhhhhhhcchhHHHHHHHHhhhcchhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 644 SDNEVEIQRLEDTKSDLQRKIADEVKGNEILEAS---LESRKKALHERRLALENDVARLKDQLQKE 706 (740)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (740)
.++|+...-||.-..++..++.-=|+-=..|+|. +....+.|.+|+-++|.-+.+|++=|+..
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777889998888888874444443444554 45667889999999999999999988643
No 170
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=47.66 E-value=17 Score=41.34 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHH
Q 004638 674 LEASLESRKKALH 686 (740)
Q Consensus 674 ~~~~~~~~~~~~~ 686 (740)
|...-.|||+.++
T Consensus 395 LEkKRQrRKEKf~ 407 (458)
T PF10446_consen 395 LEKKRQRRKEKFW 407 (458)
T ss_pred hhhhhhhhhHHHH
Confidence 5555567787664
No 171
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=47.42 E-value=40 Score=39.90 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=48.3
Q ss_pred CCceeEEEEEeCCeEEEeccCCCCCCC---CCccceeecCCee--ecCCCceeEecCCceEEEEEecCC-CC--ceEEEE
Q 004638 100 TSWKKRWFILTHTSLVFFRSDPSAIPQ---KGSEVNLTLGGID--LNNSGSVVVKADKKLLTVLFPDGR-DG--RAFTLK 171 (740)
Q Consensus 100 ksWkKRwfVL~~~~L~yyKd~~~~~~~---~g~e~~i~L~~i~--l~~s~sv~~~~~Kk~~F~I~~~~~-dg--rty~fq 171 (740)
..-+..|+-|-.+.|.+.|......-. ..+--.+.+..|+ +...+-.......++.|.+++-.. +| ..|+|+
T Consensus 497 ~~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~ 576 (695)
T KOG3523|consen 497 RLSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLS 576 (695)
T ss_pred cccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeec
Confidence 345678888888888888865432110 0000011122222 111000000124557788776321 23 479999
Q ss_pred ecChhhHHHHHHHHH
Q 004638 172 AESLEDLYDWKTALE 186 (740)
Q Consensus 172 AdSeeE~~~WI~AI~ 186 (740)
|+|+.|+..||.|+.
T Consensus 577 a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 577 AESQSDRQRWISALR 591 (695)
T ss_pred CCchHHHHHHHHhcC
Confidence 999999999999996
No 172
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.14 E-value=56 Score=38.98 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=17.3
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCc
Q 004638 306 IRELPSSPVPASCCNALLEARRTDR 330 (740)
Q Consensus 306 LReLPePLlp~~l~~~~i~~~~~~~ 330 (740)
|-+-..|||......++..+++.+.
T Consensus 218 LAERkPPlFnMNAMSALYHIAQNes 242 (948)
T KOG0577|consen 218 LAERKPPLFNMNAMSALYHIAQNES 242 (948)
T ss_pred hhhcCCCccCchHHHHHHHHHhcCC
Confidence 4455668888887777777766543
No 173
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.08 E-value=55 Score=37.91 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=42.2
Q ss_pred cCCCCCCchhhhhhhhhcch---hHHHHHHHHhhhcchhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 638 ESIDGPSDNEVEIQRLEDTK---SDLQRKIADEVKGNEILEASLE---SRKKALHERRLALENDVARLKDQL 703 (740)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 703 (740)
.-|+-..++-+..-+|+..+ .+|+.+|+++ +.+++ +..+.+.++=..||.++.+|++|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665544 7888888866 45555 666667666668999999999998
No 174
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.92 E-value=75 Score=35.99 Aligned_cols=66 Identities=26% Similarity=0.373 Sum_probs=43.5
Q ss_pred hhhhhcchhHHHHHHHHhh------------------------hcchhhhhhHHHHHHHHHH--------------HHHH
Q 004638 650 IQRLEDTKSDLQRKIADEV------------------------KGNEILEASLESRKKALHE--------------RRLA 691 (740)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~--------------~~~~ 691 (740)
|++||..|.-||.++..+| .-=.+|||.+||=+..|.- --.-
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778888888888773322 1123678888875544321 1122
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhh
Q 004638 692 LENDVARLKDQLQKERDKRTAMEA 715 (740)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~ 715 (740)
.+.+.+|||+.|+.|-..|.||=-
T Consensus 290 ~reen~rlQrkL~~e~erRealcr 313 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCR 313 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999988743
No 175
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=42.86 E-value=10 Score=30.22 Aligned_cols=21 Identities=29% Similarity=0.724 Sum_probs=19.1
Q ss_pred CCCceeEEEEEeCCeEEEecc
Q 004638 99 WTSWKKRWFILTHTSLVFFRS 119 (740)
Q Consensus 99 ~ksWkKRwfVL~~~~L~yyKd 119 (740)
.+.|.|.|+++.+.+|.+||=
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 578999999999999999983
No 176
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.22 E-value=88 Score=33.15 Aligned_cols=70 Identities=31% Similarity=0.427 Sum_probs=55.6
Q ss_pred hhhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHhhhc
Q 004638 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRL---ALENDVARLKDQLQKERDKRTAMEAGL 717 (740)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (740)
++||.|...+..|..+|...-+.=..+|+-+++=+++|-+... .|++.|.+++..||+.|....-+|.-|
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999987666667788888776666666555 567899999999999998887777644
No 177
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=41.37 E-value=1.2e+02 Score=25.31 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 677 SLESRKKALHERRLALENDVARLKDQLQK 705 (740)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (740)
.+++|=|+-..|...|++.|.+|++++-.
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999854
No 178
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=41.37 E-value=50 Score=27.39 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004638 684 ALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (740)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (740)
.|.||=-+|..+++||.-||-+-.+-|.|-|+
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAea 60 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAEA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 35566666777889999999999999999887
No 179
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.36 E-value=1e+02 Score=32.73 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=26.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 671 NEILEASLESRKKALHERRLALENDVARLKDQLQK 705 (740)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (740)
++.=+..|++..+.+.+|+.+||-++++|.+.+++
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888888888877665544
No 180
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.97 E-value=1.1e+02 Score=34.87 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHh
Q 004638 659 DLQRKIADEVKGNEILEASLESRKKALHERRL---ALENDVARLKDQLQKERDKRTAME 714 (740)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 714 (740)
.|...+.+--|-.+.|+++|+.+.+-|.|.+. +|++.++++..|.-++|.-|+|-|
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~ 258 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAE 258 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667788899999988888888875 799999999988888888877443
No 181
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=40.85 E-value=23 Score=35.43 Aligned_cols=45 Identities=29% Similarity=0.549 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 658 SDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (740)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (740)
.|+..|....+-.||.|+..|.. |+.|.+.=+-|.-++.-|+..|
T Consensus 3 eD~EsklN~AIERnalLE~ELdE-KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDE-KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888889999999999965 5555554444444444444333
No 182
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.79 E-value=1.1e+02 Score=26.39 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhcchhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Q 004638 659 DLQRKIADEVKGNEILEAS---LESRKKALHERRLALENDVARLKDQLQK-ERDKRTAM 713 (740)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 713 (740)
.|..||..-+-..+.||-. |..++.+|.+.+..|+++..+|++.-.+ .+-+|+-|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666644 4455567888899999999888754432 33344443
No 183
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=40.17 E-value=90 Score=33.73 Aligned_cols=61 Identities=39% Similarity=0.583 Sum_probs=42.7
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 004638 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHER---RLALENDVARLKDQLQKER 707 (740)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 707 (740)
++.+..|...-.+++.|+.++.+.+..|+.-+..-++.|++- |..||..+..|+++|.--+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 344556666666777777788888888887777777766654 4558888888888776533
No 184
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=39.35 E-value=65 Score=37.86 Aligned_cols=52 Identities=29% Similarity=0.400 Sum_probs=42.0
Q ss_pred hhhcchhHHHHHHHHhhhcchhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 004638 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKKA---LHERRLALENDVARLKDQL 703 (740)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 703 (740)
-|-+.|+||-.++.+=--+|.|||-.||.|||| |.|+---||.++.+++..+
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999988888999999999999997 6666667777766665544
No 185
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=37.26 E-value=36 Score=39.89 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=55.3
Q ss_pred CceEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEeccCCCCCCCCCccceeecCCeeecCCCceeEecCCceEEEEEec
Q 004638 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (740)
Q Consensus 82 ~~v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd~~~~~~~~g~e~~i~L~~i~l~~s~sv~~~~~Kk~~F~I~~~ 161 (740)
+...||||+.-...+- ..-||+|..|.-.++..|.+.....--+..+++..+.. .....-+.+......+||+|.+.
T Consensus 411 st~~kEGWmvHyt~~d--~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v-~~~~~~~~vp~~~~phcFEI~T~ 487 (888)
T KOG4236|consen 411 STKLKEGWMVHYTSKD--NLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSV-SSNNGFSLVPAGTNPHCFEIRTA 487 (888)
T ss_pred hhhhhcceEEEEechh--hhhhhhhheeccceeEeeecCCCceeEEeecHHHhhee-eccCCcccCCCCCCCceEEEEee
Confidence 3467888654322111 23366777788888888877654321111112211211 11111111122357889999875
Q ss_pred CCCCceEEEEecC------------hhhHHHHHHHHHHHHh
Q 004638 162 GRDGRAFTLKAES------------LEDLYDWKTALENALA 190 (740)
Q Consensus 162 ~~dgrty~fqAdS------------eeE~~~WI~AI~~ai~ 190 (740)
.+.+|-.++ .+-...|-.||+.++.
T Consensus 488 ----~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 488 ----TTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred ----eEEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 345555555 3448899999998864
No 186
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=36.95 E-value=51 Score=41.89 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=37.6
Q ss_pred cCCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHhcCCCC
Q 004638 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST 195 (740)
Q Consensus 150 ~~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~aPs~ 195 (740)
.++|-+|.|......-..|-+.|.|..|++.||+.|+.++...|..
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 4778888888764444679999999999999999999999766543
No 187
>PRK11637 AmiB activator; Provisional
Probab=36.72 E-value=1.6e+02 Score=33.58 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 674 LEASLESRKKALHERRLALENDVARLKDQLQK 705 (740)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (740)
+.+.|+..++.+...-..|+++..+|+.+|.+
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555677777777777764
No 188
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.54 E-value=63 Score=29.78 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCceEEEEEecCC-CCceEEEEecChhhHHHHHHHHHH
Q 004638 151 DKKLLTVLFPDGR-DGRAFTLKAESLEDLYDWKTALEN 187 (740)
Q Consensus 151 ~Kk~~F~I~~~~~-dgrty~fqAdSeeE~~~WI~AI~~ 187 (740)
....||.|+.... +-+++.|-|++.++++.|+..|..
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 3456787776421 146799999999999999999864
No 189
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=35.86 E-value=15 Score=35.76 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=19.4
Q ss_pred CCCceeEEEEEeCCeEEEecc
Q 004638 99 WTSWKKRWFILTHTSLVFFRS 119 (740)
Q Consensus 99 ~ksWkKRwfVL~~~~L~yyKd 119 (740)
++.|.|+|+++.+..|.+||=
T Consensus 28 VRrWEKKwVtvgDTslRIyKW 48 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKW 48 (165)
T ss_pred HHHHhhheEeecccceEEEEe
Confidence 578999999999999999993
No 190
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=35.12 E-value=47 Score=35.39 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 004638 180 DWKTALEN 187 (740)
Q Consensus 180 ~WI~AI~~ 187 (740)
.||-.=+.
T Consensus 105 awvCHgrk 112 (314)
T PF06524_consen 105 AWVCHGRK 112 (314)
T ss_pred hheecccc
Confidence 45544333
No 191
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=34.88 E-value=74 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=31.4
Q ss_pred CCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHhc
Q 004638 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (740)
Q Consensus 151 ~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~~ 191 (740)
..++.|.|.+. .+..-|.|++..+.+.|+++|+..+..
T Consensus 68 ~~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 68 EERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred ceEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 36677888765 567999999999999999999988743
No 192
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=34.55 E-value=41 Score=41.58 Aligned_cols=10 Identities=0% Similarity=-0.024 Sum_probs=4.0
Q ss_pred chhhhhHHHH
Q 004638 296 HIIADCVKYV 305 (740)
Q Consensus 296 h~vAslLK~f 305 (740)
..|+...+..
T Consensus 477 ~~l~~~~~~~ 486 (784)
T PF04931_consen 477 YTLVQIASEL 486 (784)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 193
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=33.63 E-value=1.2e+02 Score=25.94 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhcchhhhhhHHHHHHH
Q 004638 659 DLQRKIADEVKGNEILEASLESRKKA 684 (740)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (740)
.|+.+|-+=.--|..|+++||.||+-
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~ 27 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQ 27 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778877777899999999999974
No 194
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=33.62 E-value=39 Score=40.97 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=7.2
Q ss_pred HHHHHhhcccccCCC
Q 004638 424 VITLLEEYDKIFGEG 438 (740)
Q Consensus 424 Ve~LIen~~~IF~~~ 438 (740)
|.-.+.-|+..|.+.
T Consensus 828 iKEWLdscDI~y~Eg 842 (960)
T KOG1189|consen 828 LKEWLDSCDIKYTEG 842 (960)
T ss_pred HHHhhhcccceeecc
Confidence 444445555544444
No 195
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=33.30 E-value=93 Score=27.87 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 675 EASLESRKKALHERRLALENDVARLKDQLQKERD 708 (740)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (740)
.+.-++|-..|+..-.+|.++|.+|+.||..||.
T Consensus 44 e~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 44 EARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888999999999999999999999986
No 196
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=32.64 E-value=1.2e+02 Score=27.64 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004638 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (740)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (740)
.+++.|=+|.+.+.|+|.-.| .||+-|-.=|+-|+||.+
T Consensus 43 ~mH~~LL~~i~~~ee~R~~~E----~lQdkL~qi~eAR~AlDa 81 (96)
T PF12210_consen 43 AMHPQLLKYIQEQEEKRVYYE----GLQDKLAQIKEARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 356778889999999998776 589999999999999975
No 197
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.42 E-value=1.4e+02 Score=30.44 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=43.4
Q ss_pred hhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHH
Q 004638 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHER--RL-ALENDVARLKDQLQ 704 (740)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 704 (740)
+|+.++..+.+|+..++.=-+--+-|+-+.|.||.-+|++ |. +|++...-|+++|+
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e 133 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILE 133 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888766666778999999999988864 44 78888887877544
No 198
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.96 E-value=1.4e+02 Score=32.16 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=52.2
Q ss_pred hhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 004638 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKAL----------HERRLALENDVARLKDQLQKERDKRTAMEAG 716 (740)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (740)
..++..-.+|+..|..-++.|+.|+..+..-+.++ ...|..||.++..|+.+|..+.-.|..||.-
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 45666777888899888899999988766544444 4456788999999999999999999988863
No 199
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.94 E-value=4e+02 Score=33.09 Aligned_cols=130 Identities=14% Similarity=0.195 Sum_probs=85.1
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHh--C---CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhHHH
Q 004638 230 IGRPILLALEDVDGTPSFLEKAIRFIEEH--G---VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (740)
Q Consensus 230 FGvpL~~~~~~~~~VP~~l~~~i~~Le~~--G---l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vAslLK~ 304 (740)
|-.+|-.++.....+-.+|.++|..+... + ...+-.|-.+-+...+..++-.+-.. +....+++.|--=|+.
T Consensus 323 i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 323 IAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHHHH
Confidence 44455555566667778888888777653 2 34556677888888888887775542 1122344444444445
Q ss_pred HHhhCCCC-----------------CCChhhHHHHHHHHhcCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 004638 305 VIRELPSS-----------------PVPASCCNALLEARRTDR----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363 (740)
Q Consensus 305 fLReLPeP-----------------Llp~~l~~~~i~~~~~~~----~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~V 363 (740)
|.+.-+.. =++..+.+.++..+...+ .+-+.-|+.+|. .=|..|..+|.+|+++|..+
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq-~~p~~h~~ii~~La~lldti 478 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ-KDPAEHLEILFQLARLLDTI 478 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHh-hChHHHHHHHHHHHHHhhhh
Confidence 55444422 134446666666666555 677888899886 89999999999999998655
No 200
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.89 E-value=1.2e+02 Score=30.79 Aligned_cols=52 Identities=37% Similarity=0.527 Sum_probs=30.8
Q ss_pred hhhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (740)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (740)
..|++++....+|+.+|.++.++... + +.|.. +-++...|++.++.|+.+|+
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~~~~r~~---~-~eR~~-~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEAKKGREE---S-EEREE-LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---c-HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666555433321 1 44444 44555677788888888877
No 201
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=30.88 E-value=56 Score=27.70 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhhcCC
Q 004638 688 RRLALENDVARLKDQLQKERDKRTAMEAGLGE 719 (740)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (740)
+|-.+++-++.|+.+|++|...|.++|.=+.+
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~ 34 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRL 34 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999998874433
No 202
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=30.64 E-value=1.6e+02 Score=26.99 Aligned_cols=60 Identities=32% Similarity=0.276 Sum_probs=47.3
Q ss_pred hhhhhcchhHHHHHHHHhhhcchhhh----hhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhH
Q 004638 650 IQRLEDTKSDLQRKIADEVKGNEILE----ASLESRKKALHERR----------LALENDVARLKDQLQKERDK 709 (740)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 709 (740)
|.-|+.+-+++|.|||.==|-=++|= ++.|.||-|=++.= -.+|+++..||+||-.+.|-
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~lde 74 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLDE 74 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888999999987666666676 78999998877653 24789999999999887664
No 203
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.61 E-value=2e+02 Score=24.62 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=34.4
Q ss_pred hhhhcchhHHHHHHHHhhhcchhhhhhHH----HH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 651 QRLEDTKSDLQRKIADEVKGNEILEASLE----SR------KKALHERRLALENDVARLKDQLQK 705 (740)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~ 705 (740)
++||+.+..||.++.-=.+-|.+.|.-+. .| -...++.=.-|-.+|..|+.+|+.
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999776777776664432 12 222333333455667777776553
No 204
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.67 E-value=2.1e+02 Score=30.31 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=13.7
Q ss_pred hhhhhhhhcchhHHHHHHHHhhh
Q 004638 647 EVEIQRLEDTKSDLQRKIADEVK 669 (740)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~ 669 (740)
...|+++-..+..|+.+|.+.+.
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665443
No 205
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.66 E-value=1.2e+02 Score=28.09 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhc
Q 004638 676 ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGL 717 (740)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (740)
.....++..|.+++..|++..++|+++++.=..+.+.++.+|
T Consensus 75 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (116)
T cd04769 75 LPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDAL 116 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455778899999999999999999999988777777777654
No 206
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.51 E-value=46 Score=37.46 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCcCCCC
Q 004638 470 DQDGATPESDAYTDDDLDNASSRSCSESG 498 (740)
Q Consensus 470 ~~~~~~~e~~~~~d~~~~~~~~~~~s~~~ 498 (740)
+.|+++|..+++.|.|++....|..+..+
T Consensus 281 ~dDdeeN~ddd~~d~d~e~~~v~dN~~p~ 309 (514)
T KOG3130|consen 281 DDDDEENIDDDDGDNDHEALGVGDNSIPT 309 (514)
T ss_pred ccchhhcccccccccchhhhccCCCcCcc
Confidence 33445565555555566666666655554
No 207
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.96 E-value=48 Score=40.53 Aligned_cols=34 Identities=24% Similarity=0.531 Sum_probs=28.4
Q ss_pred eEEEeeeEeeecCCCCCCceeEEEEEeCCeEEEecc
Q 004638 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRS 119 (740)
Q Consensus 84 v~KeGyL~l~kkg~~~ksWkKRwfVL~~~~L~yyKd 119 (740)
++|+|.||+...- -+.|..+||||....|+|-..
T Consensus 475 svk~GiLy~kd~v--dheWt~h~fvlt~~kl~ys~e 508 (1267)
T KOG1264|consen 475 SVKQGILYMKDPV--DHEWTRHYFVLTDAKLSYSDE 508 (1267)
T ss_pred hhhcceEEEecCC--CCceeeeEEEEecceeEeehh
Confidence 5899988876543 479999999999999998764
No 208
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.88 E-value=2.1e+02 Score=33.31 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=11.6
Q ss_pred hHHHHHHHHhhhcchhhhhhHHH
Q 004638 658 SDLQRKIADEVKGNEILEASLES 680 (740)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~ 680 (740)
.+|+.++++=.+.|..|++..||
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~ 91 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENER 91 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556666555444
No 209
>PRK11637 AmiB activator; Provisional
Probab=28.69 E-value=2e+02 Score=32.90 Aligned_cols=8 Identities=25% Similarity=0.127 Sum_probs=4.0
Q ss_pred CCCCCCCC
Q 004638 720 FNGSFPIP 727 (740)
Q Consensus 720 ~~~~~~~~ 727 (740)
..|.|+.|
T Consensus 303 ~~g~~~~P 310 (428)
T PRK11637 303 PRGQAFWP 310 (428)
T ss_pred CCCCCccC
Confidence 34555544
No 210
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.47 E-value=65 Score=34.29 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 004638 684 ALHERRLALENDVARL 699 (740)
Q Consensus 684 ~~~~~~~~~~~~~~~~ 699 (740)
.|.+||.+|+.+|+.|
T Consensus 8 eL~qrk~~Lq~eIe~L 23 (283)
T PF11285_consen 8 ELEQRKQALQIEIEQL 23 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555444433
No 211
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.46 E-value=1.4e+02 Score=28.39 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=19.6
Q ss_pred hhhhhhcchhHHHHHHHHhhhcchhhhh
Q 004638 649 EIQRLEDTKSDLQRKIADEVKGNEILEA 676 (740)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (740)
.+.+|+..|..|...|.+=.+.|.-+++
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666666644
No 212
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.26 E-value=1.5e+02 Score=28.72 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=5.2
Q ss_pred hhhhcchhHHHHHH
Q 004638 651 QRLEDTKSDLQRKI 664 (740)
Q Consensus 651 ~~~~~~~~~~~~~~ 664 (740)
.+|+..-..|+.++
T Consensus 69 ~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 69 ERLQNDVERLKEQL 82 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 213
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.46 E-value=71 Score=39.17 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=34.0
Q ss_pred cCCceEEEEEecCCCCceEEEEecChhhHHHHHHHHHHHHh
Q 004638 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (740)
Q Consensus 150 ~~Kk~~F~I~~~~~dgrty~fqAdSeeE~~~WI~AI~~ai~ 190 (740)
..+-+.|.+.+.....-.|.|.|++.+++.+|+++|+.+.-
T Consensus 871 n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~ 911 (1267)
T KOG1264|consen 871 NQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITW 911 (1267)
T ss_pred CCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHH
Confidence 35677788877765556799999999999999999998763
No 214
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=27.09 E-value=86 Score=37.71 Aligned_cols=58 Identities=28% Similarity=0.418 Sum_probs=42.2
Q ss_pred hhhhhcchh-HHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 004638 650 IQRLEDTKS-DLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (740)
Q Consensus 650 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (740)
|-|||--|. +.+.|.+ |-++-.+|.+|+=| +-|.||+|==+-.+.| .++|++||.|.+
T Consensus 354 ~gkLdp~~aeeF~kRV~---~~ia~~~AEIekmK-~~Hak~m~k~k~~s~l---k~AE~~LR~a~~ 412 (669)
T PF08549_consen 354 VGKLDPGKAEEFRKRVA---KKIADMNAEIEKMK-ARHAKRMAKFKRNSLL---KDAEKELRDAVE 412 (669)
T ss_pred ccCCCHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHhhccHH---HHHHHHHHhccC
Confidence 345555554 4677777 55688999999765 5699999765555555 479999999987
No 215
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.80 E-value=2.1e+02 Score=30.06 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=31.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhc
Q 004638 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGL 717 (740)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (740)
.++.--..|.+.+.+....|..+|..|++.+..||.-|..-|.-+
T Consensus 107 ~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i 151 (247)
T PF06705_consen 107 EIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI 151 (247)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666667788888888888888888887766543
No 216
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.18 E-value=2e+02 Score=31.01 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=25.8
Q ss_pred hhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 004638 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALEN 694 (740)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (740)
+++.+++.|-+--. .-|.|-+.+||||-.|..-|.-||.
T Consensus 120 ~~q~~~~~Lnnvas----dea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 120 RLQSSRAQLNNVAS----DEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544333 3367899999999888777766653
No 217
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=26.05 E-value=2.2e+02 Score=32.87 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=11.5
Q ss_pred hhcchhHHHHHHHHhhhcchhhhh
Q 004638 653 LEDTKSDLQRKIADEVKGNEILEA 676 (740)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~ 676 (740)
.|..+++.|.-+ |-|-.||-+|.
T Consensus 501 ~eTll~niq~ll-kva~dnar~qe 523 (641)
T KOG3915|consen 501 IETLLTNIQGLL-KVAIDNARAQE 523 (641)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344455555543 33455666653
No 218
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.95 E-value=1.7e+02 Score=27.56 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHhhh
Q 004638 675 EASLESRKKALHERRLALENDVARLKDQLQK-ERDKRTAMEAG 716 (740)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 716 (740)
-+.|+.|++.+..+--.||+.-.+|++++.+ +..||.+|..|
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999974 67788888765
No 219
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.35 E-value=70 Score=39.65 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=4.6
Q ss_pred CCceeEEEEE
Q 004638 100 TSWKKRWFIL 109 (740)
Q Consensus 100 ksWkKRwfVL 109 (740)
.+|..|-|++
T Consensus 1079 g~~~dr~~IF 1088 (1516)
T KOG1832|consen 1079 GNRRDRQFIF 1088 (1516)
T ss_pred cCcccchhhH
Confidence 3455444444
No 220
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.14 E-value=2.1e+02 Score=27.17 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=22.7
Q ss_pred hHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 658 SDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (740)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (740)
..++..|+.=-..-...++.|+.-+....++|..|+++++.++..+
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444333333334445555555555556666666665555443
No 221
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=25.00 E-value=2.8e+02 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcC
Q 004638 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLG 718 (740)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (740)
++.++.|.+.+......+.+.++.++++++.=+.+..+++-|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTK 203 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55667778888888888888888999999888888888888864
No 222
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=24.82 E-value=1.1e+02 Score=31.70 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 672 EILEASLESRKKALHERRLALENDVARLKDQ 702 (740)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (740)
+-|||--|||-+.=+--|.-|||++..|+-|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~q 43 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQ 43 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999998888899999999776544
No 223
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.57 E-value=2e+02 Score=35.32 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004638 685 LHERRLALENDVARLKDQLQ 704 (740)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~ 704 (740)
+..||..||.++.+|+-+|+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 224
>PF15463 ECM11: Extracellular mutant protein 11
Probab=24.35 E-value=1.9e+02 Score=27.88 Aligned_cols=64 Identities=22% Similarity=0.428 Sum_probs=49.6
Q ss_pred ccCCCcCCCCCCc-----hhhhhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 633 KNLSMESIDGPSD-----NEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (740)
Q Consensus 633 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (740)
.++|++.-+.+|+ --..|+||-.++..|+.+++ ++.+-+.+|-.||..+...|.+.+.++|..-
T Consensus 67 s~ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~-------~fe~eI~~R~eav~~~~~~l~~kL~~mk~~G 135 (139)
T PF15463_consen 67 SNLSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFA-------VFEDEINRRAEAVRAQGEQLDRKLEKMKEGG 135 (139)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556666666665 23568888888888877765 7888899999999999999999999988753
No 225
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=24.33 E-value=1.8e+02 Score=35.24 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHH
Q 004638 658 SDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQ--LQKERDKRTAM 713 (740)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 713 (740)
..+|.+|+.----|+.+||++..-+..||- |-+|+||-+|-|++ .|+=-|||.+|
T Consensus 540 ~~sr~~~~~le~~~~a~qat~d~a~~Dlqk-~nrlkQdear~~~~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 540 SNSRALAAALEAQALAEQATNDEARSDLQK-ENRLKQDEARERESMLVQQVEDLRQTL 596 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356677755445578889988877777764 45667777776655 34455666665
No 226
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.93 E-value=2.3e+02 Score=33.33 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 004638 678 LESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (740)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (740)
+..+..+|+.++.+|++....|+++|++=+.-.++|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456678888999999999999999886544444443
No 227
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.87 E-value=3.2e+02 Score=24.21 Aligned_cols=67 Identities=18% Similarity=0.384 Sum_probs=39.8
Q ss_pred hhhhhhhcchhHHHHHHHHhh--------hcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 004638 648 VEIQRLEDTKSDLQRKIADEV--------KGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (740)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (740)
..|..|+..+.+++..+.... ....-.-..|+.+...+......++++|.++++.|.+-+--+.++|
T Consensus 19 ~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 19 EQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777766665444 1111223456777777777778888888888888876655555554
No 228
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=23.84 E-value=69 Score=36.40 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=45.5
Q ss_pred CCcchhhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc--------hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 004638 293 EDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR--------GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVA 364 (740)
Q Consensus 293 ~d~h~vAslLK~fLReLPePLlp~~l~~~~i~~~~~~~--------~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va 364 (740)
.|+|..++.+|.|+|.+|+|++|.++---+-+|.+... ..-...++..+ ..||..- .+ .-|+..|..|+
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~l-r~lpenl-LT-~el~~rFeev~ 194 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRL-RRLPENL-LT-VELKTRFEEVF 194 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHH-hhcchhh-HH-HHHHHHHHHHH
Confidence 49999999999999999999999887666666653111 22233333333 3566532 22 23444555555
Q ss_pred hhhc
Q 004638 365 SSKN 368 (740)
Q Consensus 365 ~~s~ 368 (740)
.|..
T Consensus 195 ~h~~ 198 (514)
T KOG4370|consen 195 LHAQ 198 (514)
T ss_pred ccch
Confidence 5543
No 229
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=23.75 E-value=58 Score=38.73 Aligned_cols=132 Identities=14% Similarity=-0.022 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC--CCCCCCCCCcchhhhhHHHHHhhCCCCCCChhhHHHH
Q 004638 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG--KTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322 (740)
Q Consensus 245 P~~l~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g--~~~~~~~~d~h~vAslLK~fLReLPePLlp~~l~~~~ 322 (740)
+.-..+|..+...++....|.|+.+| ..+..+++.-+.+ ++.+..+...+++.++++.+++.+ +|.++.-|...
T Consensus 59 ~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~--f~~~~~e~q~~ 134 (577)
T KOG4270|consen 59 DMDSEQLRLFQAQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYL--FLGLPVEFQPD 134 (577)
T ss_pred hcchhhhhhhhhhhhhhhccccccCc--chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhh--hccchhhhccc
Confidence 44457888888888999999999999 4555555554433 355667778899999999999998 77777666655
Q ss_pred HHHHhcCc-----hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcccCCCccchhhhhcccccCCC
Q 004638 323 LEARRTDR-----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (740)
Q Consensus 323 i~~~~~~~-----~~ri~~i~~lI~~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivFaP~Llrp~ 389 (740)
+....... .....+++. .-.|..|+ +-+|+.||... ..+.|.-.+..-+|.++-..+.
T Consensus 135 ~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~l~~e~Gl~eEGlFRi~~~~sk 197 (577)
T KOG4270|consen 135 YHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----RLLLEGGLKEEGLFRINGEASK 197 (577)
T ss_pred cccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----hhhhhcCccccceeccCCCchH
Confidence 55433222 112233332 35677777 67777777664 4556666677777777765543
No 230
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=23.31 E-value=92 Score=37.17 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=7.8
Q ss_pred HHHHHhhcccccCCC
Q 004638 424 VITLLEEYDKIFGEG 438 (740)
Q Consensus 424 Ve~LIen~~~IF~~~ 438 (740)
++-.+..++..|-+.
T Consensus 880 lKewLds~di~f~e~ 894 (1001)
T COG5406 880 LKEWLDSNDILFMET 894 (1001)
T ss_pred HHHHhhhcCceeEec
Confidence 444555555555544
No 231
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.96 E-value=2.1e+02 Score=33.39 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=29.2
Q ss_pred hhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (740)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (740)
++.....++.++....-.++.|++.||...++..|++..|++--.+|..|.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 65 LNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445566777777766666666666666655555554
No 232
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.78 E-value=1.3e+02 Score=26.50 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=29.2
Q ss_pred hhhhhhcchhHHHHHH---HHhhhcch----hhhhhHHHHHHHHHHH
Q 004638 649 EIQRLEDTKSDLQRKI---ADEVKGNE----ILEASLESRKKALHER 688 (740)
Q Consensus 649 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~ 688 (740)
-|+|||.-|..+..-| -.|+||+- ++-.-+.-||+.-+||
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4889999999999887 56899884 4445555666665555
No 233
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.69 E-value=1.5e+02 Score=37.06 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=42.6
Q ss_pred cccccCCCCCCCCcCCCCCccccccccc-------cccCCCcCCCCCCc--hhhhhhhhhcchhHHHHHHHHhhhcchhh
Q 004638 604 SCLEKSSPVSNESVYGSKRPTVWGRTAA-------RKNLSMESIDGPSD--NEVEIQRLEDTKSDLQRKIADEVKGNEIL 674 (740)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (740)
.|..-+.--+.-...|+-| -+||-++- +|+- +.|.+++ .|.. ..-+.-|..|....-+|.-.
T Consensus 511 ~~VNGs~v~~~t~L~~GdR-iLwGnnHFFrvN~PK~~~~---d~dass~~s~~~~-----f~Y~~A~~Ev~~~~l~ndpv 581 (1714)
T KOG0241|consen 511 SCVNGSLVCSTTQLWHGDR-ILWGNNHFFRVNLPKRKRR---DLDASSEASSEPD-----FNYEFAQMEVIMKTLNNDPV 581 (1714)
T ss_pred eeecCceeccccccccCce-EEecccceEEecCcccccc---ccccccccCcccc-----cChHHHHHHHHHhccCCcHH
Confidence 3333333334446677889 99998763 2332 1222222 1111 11223344444444456666
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 004638 675 EASLESR-KKALHERRLALENDVARLKDQLQ 704 (740)
Q Consensus 675 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 704 (740)
|.-+++= +|-..|.|.|||+.-.-...+||
T Consensus 582 q~~~~~le~qheEeKr~ALE~Qr~~yE~~~e 612 (1714)
T KOG0241|consen 582 QNVVQSLEKQHEEEKRSALEEQRLMYERELE 612 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544331 34445566666655444444444
No 234
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.29 E-value=2e+02 Score=26.40 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Q 004638 675 EASLESRKKALHERRLALENDVARLKDQLQK-ERDKRTAM 713 (740)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 713 (740)
-+.|+.|.+.+.++.-.||+....|++++.. ++.+|.+|
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888888888764 45566665
No 235
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=21.96 E-value=2.3e+02 Score=27.25 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004638 678 LESRKKALHERRLALENDVARLKDQLQKERD 708 (740)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (740)
.+.|.+.|..++..|.+....++.+|+.++.
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~ 108 (158)
T PF03938_consen 78 RQKRQQELQQKEQELQQFQQQAQQQLQQEEQ 108 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888888774
No 236
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.38 E-value=1.4e+02 Score=27.88 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004638 676 ASLESRKKALHERRLALENDVARLKDQLQK 705 (740)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (740)
..+++|.+.|.++...|+++..+|++|+..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888764
No 237
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.34 E-value=2.6e+02 Score=30.23 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=36.2
Q ss_pred hhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 004638 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERR----------LALENDVARLKDQLQK 705 (740)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 705 (740)
+|+.+...-..++..|..=....+.|.+.+||||+.|.--+ =|.=-+-++|.++||+
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 44555555555666666666777889999999888775332 2333456677777665
No 238
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=21.24 E-value=2.5e+02 Score=25.13 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=24.1
Q ss_pred HHHhhhcchhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 004638 664 IADEVKGNEILEASLESRKKALHE--RRLALENDVARLKDQL 703 (740)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 703 (740)
+++=|-+|--|+..+. |=+.|++ -|-+|=+.|+.|++||
T Consensus 46 vtr~A~EN~rL~ee~r-rl~~f~~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 46 VTRFAMENIRLREELR-RLQSFYVEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 3566666666666653 4455555 5666667777777664
No 239
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.00 E-value=2.2e+02 Score=33.18 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=18.0
Q ss_pred hhhhhhhcchhHHHHHHH---Hhhhcchhhhh
Q 004638 648 VEIQRLEDTKSDLQRKIA---DEVKGNEILEA 676 (740)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 676 (740)
.+|-++-.++.+|+.-++ .-.++|.-|++
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766663 33466777755
No 240
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=20.31 E-value=96 Score=35.53 Aligned_cols=8 Identities=38% Similarity=0.347 Sum_probs=4.2
Q ss_pred hhhcCCCC
Q 004638 714 EAGLGEFN 721 (740)
Q Consensus 714 ~~~~~~~~ 721 (740)
|.||-|.-
T Consensus 434 ELGL~mA~ 441 (458)
T PF10446_consen 434 ELGLEMAG 441 (458)
T ss_pred HHHHHHhh
Confidence 55665543
No 241
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.07 E-value=2.7e+02 Score=32.98 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=34.5
Q ss_pred hhhhhhcchhHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004638 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (740)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (740)
+.-.||+.+.+|++.|++=--.=..||.++++-++.|. +|+-.|+. ++|.+|.+.|.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~----~Lk~~ieq------aq~~~~El~~~ 150 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELS----ALKGEIEQ------AQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH----HHHhHHHH------HHHHHHHHHhh
Confidence 44567888888888887544444456667777666663 45555553 44444444443
Done!