Query 004638
Match_columns 740
No_of_seqs 421 out of 2493
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 17:46:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004638.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1938-1942//hhsearch_pdb/004638hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7c_A Rhogap protein; GTPase 1.0 1 1 319.6 13.7 211 174-441 1-222 (231)
2 3byi_A RHO GTPase activating p 1.0 1 1 316.6 18.1 205 215-438 4-214 (214)
3 3fk2_A Glucocorticoid receptor 1.0 1 1 315.2 16.0 196 224-438 48-246 (246)
4 3iug_A RHO/CDC42/RAC GTPase-ac 1.0 1 1 312.4 16.0 209 220-442 11-226 (229)
5 2ee4_A RHO GTPase activating p 1.0 1 1 311.7 14.9 197 225-440 8-207 (209)
6 3msx_B RHO GTPase-activating p 1.0 1 1 310.9 15.8 194 224-435 7-201 (201)
7 1ow3_A RHO-GTPase-activating p 1.0 1 1 308.3 16.5 196 224-439 39-238 (242)
8 1tx4_A P50-rhogap; complex (GT 1.0 1 1 306.4 16.5 192 224-435 3-198 (198)
9 3cxl_A N-chimerin; SH2, RHO-GA 1.0 1 1 305.5 15.9 192 226-435 266-463 (463)
10 2osa_A N-chimaerin; RHO-GAP, G 1.0 1 1 303.6 18.0 191 227-435 6-202 (202)
No 1
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=1.00 E-value=1 Score=319.60 Aligned_cols=211 Identities=24% Similarity=0.343 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHCC----CCCCHHHH
Q ss_conf 75559999999997871389999887656744564011015501110046899981246756764208----99858999
Q 004638 174 SLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDV----DGTPSFLE 249 (740)
Q Consensus 174 SeeE~~~WI~AL~~ai~~aP~~~~~~~~~~i~~~~~~~~~~~s~~~~~~k~~k~~vFGvpL~~ll~~~----~~vP~iI~ 249 (740)
|++|++.|+.+|++.. ++||+||...+++. ..+|.+|.
T Consensus 1 ~e~~~~~W~~~m~~~~--------------------------------------pvfgvpl~~~~~~~~~l~~~~p~iv~ 42 (231)
T 1f7c_A 1 SEEDRRLWMEAMDGRE--------------------------------------PVYNSNKDNQSEGTAQLDSIGFSIIK 42 (231)
T ss_dssp --------------------------------------------------------------------CCSSHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCC--------------------------------------CCCCCCCHHCCCCCCCCCCCCCCHHH
T ss_conf 9678999999708999--------------------------------------84378600024443215776760999
Q ss_pred HHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH-HHCCC---CCCC--CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999997089547925408997899999999-73399---9999--998810245558898741999998824489999
Q 004638 250 KAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGK---TEFS--PEEDAHIIADCVKYVIRELPSSPVPASCCNALL 323 (740)
Q Consensus 250 ~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~-ld~g~---~~~~--~~~dv~~vAslLK~fLReLPePLlp~~ly~~~i 323 (740)
+|+++|+++|+.+|||||++|+..+++++++. +|.+. ..+. ..+|+|+||++||.|||+||+||||+++|+.|+
T Consensus 43 ~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~ 122 (231)
T 1f7c_A 43 KCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFI 122 (231)
T ss_dssp HHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999998489978715537849999999999867477766684223336699999999999987898778999999999
Q ss_pred HHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9982294-679999999999209946798999999999999861012699932101332132048786796554344566
Q 004638 324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV 402 (740)
Q Consensus 324 ~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAvvFaPsLLrp~~~~~~~~e~~~~~ 402 (740)
.+.+..+ ++++..++.++. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+||||+|+|++.....
T Consensus 123 ~~~~~~~~~~r~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~-------- 193 (231)
T 1f7c_A 123 KAAKLENQESRVSEIHSLVH-RLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVA-------- 193 (231)
T ss_dssp HHHTCSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCS--------
T ss_pred HHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHH--------
T ss_conf 99852899999999999999-799999999999999999999637777898899999962420788866688--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 899928999999999899999999995034225888899
Q 004638 403 GGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSAS 441 (740)
Q Consensus 403 ~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~e~~~s 441 (740)
+......++.+|++||+||+.||++.+..
T Consensus 194 ----------~~~~~~~~~~vve~LI~~~~~iF~~~~~~ 222 (231)
T 1f7c_A 194 ----------AIMDIKFQNIVIEILIENHEKIFNTVPET 222 (231)
T ss_dssp ----------GGGGHHHHHHHHHHHHHTHHHHHHSCCC-
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ----------99877999999999999799867999999
No 2
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=316.63 Aligned_cols=205 Identities=26% Similarity=0.428 Sum_probs=179.3
Q ss_pred CCHHHHCCC-CCCCCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-CCC
Q ss_conf 501110046-89998124675676420-899858999999999970895479254089978999999997339999-999
Q 004638 215 GSVEQLKEK-PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSP 291 (740)
Q Consensus 215 ~s~~~~~~k-~~k~~vFGvpL~~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~-~~~ 291 (740)
++.+.++.+ ..+..+||+||+.++.+ +..||.+|.+|+++|+++|+.+|||||++|+..++++++..+|.|... +..
T Consensus 4 ps~~~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~ 83 (214)
T 3byi_A 4 PSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDD 83 (214)
T ss_dssp CCHHHHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTS
T ss_pred CCHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 84546876388768823886799997769998969999999999828987882323787999999999982579978884
Q ss_pred --CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf --988102455588987419999988244899999982294-67999999999920994679899999999999986101
Q 004638 292 --EEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN 368 (740)
Q Consensus 292 --~~dv~~vAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~ 368 (740)
..|+|+||++||.|||+||+||||.++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.|++
T Consensus 84 ~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~s~ 162 (214)
T 3byi_A 84 SQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQ-KLPPPNRDTMKVLFGHLTKIVAKAS 162 (214)
T ss_dssp GGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 555534899899999998589888999999999999866999999999999999-6899999999999999999997356
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 2699932101332132048786796554344566899928999999999899999999995034225888
Q 004638 369 QNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 369 ~NkMta~NLAvvFaPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~e~ 438 (740)
.|+|++.|||+||||+|+|++... .. .+.....++.+|++||+||+.||+++
T Consensus 163 ~NkM~~~NLa~vf~P~Ll~~~~~~-------------~~-----~~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 163 KNLMSTQSLGIVFGPTLLRAENET-------------GN-----MAIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHCCCHHHHHHHHHHHHHCCTTSS-------------SC-----HHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCC-------------HH-----HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 779987986998645037888753-------------77-----99987999999999999799856999
No 3
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=315.20 Aligned_cols=196 Identities=22% Similarity=0.401 Sum_probs=175.7
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHH
Q ss_conf 8999812467567642089985899999999997089547925408997899999999733999999--99881024555
Q 004638 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS--PEEDAHIIADC 301 (740)
Q Consensus 224 ~~k~~vFGvpL~~ll~~~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~--~~~dv~~vAsl 301 (740)
..++.+||+||+.++.....||.+|.+|+++|+++|+.+|||||++|+...++.|++.||.|..... .++|+|+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred CCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 66788538778999628999892999999999982998788367478477999999999659997855466769999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 88987419999988244899999982294-67999999999920994679899999999999986101269993210133
Q 004638 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (740)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAvv 380 (740)
||.|||+||+||||+.+|+.|+.+....+ ++++..++.++. +||+.|+.+|+||+.||+.|+.+++.|+|++.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLK-KFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 999998589866889999999988524877999999999999-7899999999999999999986357668965775787
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 2132048786796554344566899928999999999899999999995034225888
Q 004638 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (740)
Q Consensus 381 FaPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~e~ 438 (740)
|||+||||.... +.+...+..++.+|++||+||+.||.+.
T Consensus 207 f~P~Llrp~~~~------------------~~~~~~~~~~~~ive~LI~~~~~iF~n~ 246 (246)
T 3fk2_A 207 FWPTLMRPDFST------------------MDALTATRTYQTIIELFIQQCPFFFYNR 246 (246)
T ss_dssp HHHHHHCCCSSS------------------SCHHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred HCCCCCCCCCCC------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 406203889754------------------7799988999999999999679863898
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=1.00 E-value=1 Score=312.40 Aligned_cols=209 Identities=20% Similarity=0.243 Sum_probs=177.1
Q ss_pred HCCC-CCCCCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC-C---CC
Q ss_conf 0046-89998124675676420-89985899999999997089547925408997899999999733999999-9---98
Q 004638 220 LKEK-PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS-P---EE 293 (740)
Q Consensus 220 ~~~k-~~k~~vFGvpL~~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~-~---~~ 293 (740)
++++ ..+.++||+||+.++.. +..||.+|.+|+++|+++|+ +|||||++|+..++++|++.|+.|..... . .+
T Consensus 11 ~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~ 89 (229)
T 3iug_A 11 RENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQ 89 (229)
T ss_dssp -------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTT
T ss_pred CCCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 6788889989689665999976699889799999999998099-888743688699999999998558988865010334
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8102455588987419999988244899999982294-679999999999209946798999999999999861012699
Q 004638 294 DAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRM 372 (740)
Q Consensus 294 dv~~vAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkM 372 (740)
|+|+||++||.|||+||+||||.++|+.|+.+....+ ++++..++.++. +||+.|+.+|+||+.||++|+.+++.|+|
T Consensus 90 dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 168 (229)
T 3iug_A 90 DIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQ-QLPPPHYRTLEFLMRHLSLLADYCSITNM 168 (229)
T ss_dssp CHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 22889999999999789977598999999999974888999999999999-79999999999999999999966473579
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9321013321320487867965543445668999289999999998999999999950342258888997
Q 004638 373 STSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASP 442 (740)
Q Consensus 373 ta~NLAvvFaPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~e~~~s~ 442 (740)
++.|||+||||+|||++....... ....+.+....++.+|++||+||+.||++...+.
T Consensus 169 ~~~NLAivf~P~Ll~~~~~~~~~~------------~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~~~ 226 (229)
T 3iug_A 169 HAKNLAIVWAPNLLRSKQIESACF------------SGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMA 226 (229)
T ss_dssp CHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC------
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 827879987134027786331223------------2178888789999999999986788079837765
No 5
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=1.00 E-value=1 Score=311.67 Aligned_cols=197 Identities=22% Similarity=0.368 Sum_probs=173.8
Q ss_pred CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHH
Q ss_conf 999812467567642089985899999999997089547925408997899999999733999999--998810245558
Q 004638 225 VKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS--PEEDAHIIADCV 302 (740)
Q Consensus 225 ~k~~vFGvpL~~ll~~~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~--~~~dv~~vAslL 302 (740)
.+..+||+||+.++.....||.+|.+|+++|+++|+.+|||||++|+..+++++++.|++|..... ..+|+|++|++|
T Consensus 8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHH
T ss_pred CCCCEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99996088689997369998929999999999819987873106898999999999985589988556788899999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 8987419999988244899999982294-679999999999209946798999999999999861012699932101332
Q 004638 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (740)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAvvF 381 (740)
|.|||+||+||||+++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.+++.|+|++.|||+||
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf 166 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVK-KFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF 166 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTT-TSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99998499866799999999999828998999999999999-78999999999999999999856444279878878873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 13204878679655434456689992899999999989999999999503422588889
Q 004638 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (740)
Q Consensus 382 aPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~e~~~ 440 (740)
||+|+|++......+. + +...+.+|++||+||+.||+++.+
T Consensus 167 ~P~L~~~~~~~~~~l~-------~-----------~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 167 WPTLMRPDFENREFLS-------T-----------TKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHSCCCCCSSCCSC-------C-----------CTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred CCCCCCCCCCCHHHHH-------H-----------HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 3611188986688999-------7-----------699999999999856987199987
No 6
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=310.91 Aligned_cols=194 Identities=20% Similarity=0.340 Sum_probs=172.9
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 89998124675676420899858999999999970895479254089978999999997339999999988102455588
Q 004638 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303 (740)
Q Consensus 224 ~~k~~vFGvpL~~ll~~~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~dv~~vAslLK 303 (740)
+.++.+||++|+.++++ +++|.+|.+|+++|+++|+.+|||||++|+...++++++.+|.|.......+|+|++|++||
T Consensus 7 ~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lLK 85 (201)
T 3msx_B 7 PMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVLK 85 (201)
T ss_dssp ---CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHHH
T ss_pred CCCCCEECCCHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99988428769999608-99897999999999984998898066397899999999996169988888553778999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHC
Q ss_conf 987419999988244899999982294-6799999999992099467989999999999998610126999321013321
Q 004638 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (740)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAvvFa 382 (740)
.|||+||+||+|.++|+.|+.+....+ ++++..++.++. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+|||
T Consensus 86 ~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~ 164 (201)
T 3msx_B 86 DFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLD-QLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVA 164 (201)
T ss_dssp HHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9999589877899999999998733567999999999999-899999999999999999999653647898036555531
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 32048786796554344566899928999999999899999999995034225
Q 004638 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 383 PsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
|+|||++...... ........++.+|++||+||+.||
T Consensus 165 P~ll~~~~~~~~~----------------~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 165 PSILWPPASSSPE----------------LENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHCCCCTTSCHH----------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6201789777767----------------899999999999999997458429
No 7
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=1.00 E-value=1 Score=308.32 Aligned_cols=196 Identities=22% Similarity=0.336 Sum_probs=172.8
Q ss_pred CCCCCCCCCCHHHHHHCCC---CCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-CCCCCCCCHHH
Q ss_conf 8999812467567642089---9858999999999970895479254089978999999997339999-99998810245
Q 004638 224 PVKFPVIGRPILLALEDVD---GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIA 299 (740)
Q Consensus 224 ~~k~~vFGvpL~~ll~~~~---~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~-~~~~~dv~~vA 299 (740)
+.+..+||++|+.++.+.. .||.+|.+|+++|+.+|+.+|||||++|+..+++++++.||+|... +....|+|++|
T Consensus 39 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~va 118 (242)
T 1ow3_A 39 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPA 118 (242)
T ss_dssp CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99888259759999760599888899999999999981999786256478699999999998468987722156627999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 55889874199999882448999999822946799999999992099467989999999999998610126999321013
Q 004638 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (740)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAv 379 (740)
++||.|||+||+||+|.++|+.|+.+.+.+.++++..++.++. +||+.|+.+|+||+.||++|+++++.|+|++.|||+
T Consensus 119 ~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 197 (242)
T 1ow3_A 119 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 197 (242)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999857987778999999999986898999999999999-789999999999999999999612767899888598
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 321320487867965543445668999289999999998999999999950342258888
Q 004638 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGS 439 (740)
Q Consensus 380 vFaPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF~e~~ 439 (740)
||||+|+|++.. .........++.+|++||+||+.||++..
T Consensus 198 vf~P~Ll~~~~~-------------------~~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 198 VFGPNLLWAKDA-------------------AITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHCCCSSH-------------------HHHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHCCHHCCCCCC-------------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 520200787985-------------------31099999999999999997999859999
No 8
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=1.00 E-value=1 Score=306.37 Aligned_cols=192 Identities=22% Similarity=0.342 Sum_probs=170.1
Q ss_pred CCCCCCCCCCHHHHHHCCC---CCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-CCCCCCCCHHH
Q ss_conf 8999812467567642089---9858999999999970895479254089978999999997339999-99998810245
Q 004638 224 PVKFPVIGRPILLALEDVD---GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIA 299 (740)
Q Consensus 224 ~~k~~vFGvpL~~ll~~~~---~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~-~~~~~dv~~vA 299 (740)
+.+..+||+||+.++.+.. .||.+|.+|+++|+++|+.+|||||++|+..+++++++.+|.|... +....|+|++|
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~a 82 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA 82 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 99988138868999964899898898999999999980998787342178599999999998279998811046622899
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 55889874199999882448999999822946799999999992099467989999999999998610126999321013
Q 004638 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (740)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAv 379 (740)
++||.|||+||+||+|.++|+.|+.+.+.+.++++..++.++. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+
T Consensus 83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~ 161 (198)
T 1tx4_A 83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 161 (198)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999978986779999999999986898999999999999-789999999999999999998626888898898785
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 32132048786796554344566899928999999999899999999995034225
Q 004638 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 380 vFaPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
||||+|+|++.. ..........+.+|++||+||+.||
T Consensus 162 vf~P~Ll~~~~~-------------------~~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 162 VFGPNLLWAKDA-------------------AITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHCCCSSH-------------------HHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HHCCCCCCCCCC-------------------CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 641441578986-------------------2169999999999999998489749
No 9
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=1.00 E-value=1 Score=305.54 Aligned_cols=192 Identities=19% Similarity=0.313 Sum_probs=170.0
Q ss_pred CCCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCC--CCCC--CCCCCCHHHH
Q ss_conf 998124675676420-8998589999999999708954792540899789999999973399--9999--9988102455
Q 004638 226 KFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFS--PEEDAHIIAD 300 (740)
Q Consensus 226 k~~vFGvpL~~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~--~~~~--~~~dv~~vAs 300 (740)
...+||++|+.++.. +..||.+|.+|+++|+.+|+.+|||||++|+...+++|++.||.+. .++. ...|+|+||+
T Consensus 266 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~ 345 (463)
T 3cxl_A 266 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 345 (463)
T ss_dssp CCCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 33223465310000369978862899899998507887862572598999999999998358767755234788001135
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 588987419999988244899999982294-6799999999992099467989999999999998610126999321013
Q 004638 301 CVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (740)
Q Consensus 301 lLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAv 379 (740)
+||.|||+||+||||+++|+.|+.+.+..+ ++++..++.+|. .||+.|+.+|++|+.||++|+.+++.|+|++.|||+
T Consensus 346 lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAi 424 (463)
T 3cxl_A 346 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALK-LLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGI 424 (463)
T ss_dssp HHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 7999998567877888999999999845999999999999998-589999999999999999998535655899899799
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 32132048786796554344566899928999999999899999999995034225
Q 004638 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 380 vFaPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
||||+|||++..... .+...+..++.+|++||+||+.||
T Consensus 425 vf~P~Ll~~~~~~~~-----------------~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 425 VFGPTLMRSPELDAM-----------------AALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHHCCCCCSCTT-----------------GGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred HHHCCCCCCCCCCHH-----------------HHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 860502688986678-----------------899878999999999985546219
No 10
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=303.61 Aligned_cols=191 Identities=19% Similarity=0.330 Sum_probs=171.1
Q ss_pred CCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCC-C-CCCC--CCCCCCHHHHH
Q ss_conf 98124675676420-899858999999999970895479254089978999999997339-9-9999--99881024555
Q 004638 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-K-TEFS--PEEDAHIIADC 301 (740)
Q Consensus 227 ~~vFGvpL~~ll~~-~~~vP~iI~~~i~~Le~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g-~-~~~~--~~~dv~~vAsl 301 (740)
.++||+||+.++.+ +..+|.+|.+|+++|+++|+.+|||||++|+..+++++++.||++ . .++. ...|+|++|++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 88667886999977599989499999999998488867823306849999999999983897567774444567899999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 88987419999988244899999982294-67999999999920994679899999999999986101269993210133
Q 004638 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (740)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMta~NLAvv 380 (740)
||.|||+||+||+|.++|+.|+.+.+..+ ++++..++.++. +||+.|+.+|+||+.||++|+.+++.|+|++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALK-LLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 999999689744799999999999836999999999999999-7899999999999999999864165778998999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2132048786796554344566899928999999999899999999995034225
Q 004638 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (740)
Q Consensus 381 FaPsLLrp~~~~~~~~e~~~~~~~~~s~~l~~a~~~~~~~~~iVe~LIen~~~IF 435 (740)
|||+|+|++... . +.+...+.+++.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HCCCCCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 713427999846--------------8---8999979999999999997151049
Done!