BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004640
(740 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 148/535 (27%), Positives = 229/535 (42%), Gaps = 83/535 (15%)
Query: 205 FLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGIL 264
FL L+++ +S K++G+F + + T+L L + ++ GP +P K L L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 274
Query: 265 DISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG------------------- 305
++ N G IP + +L ++S N G++P FG
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 306 ------NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------- 346
M+ L++LDLS N+ +GE+PE L +L L LS+N+
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 347 --EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNI 404
+ LYL NN +G IP L N + L+ + + N+L G IP L L+ L + N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 405 SGSLPS-CFHPLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELS 452
G +P + ++E + L N L ++ LS N L G IP WIG L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 453 QLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPC-----------FDNTTL 501
L+ L L +N+ G +P +G+IP F
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 502 YESYNNSSSLDEKFEISFFIE--GPQGD----FTTKN----IAYIYQGKVLSLLSG---- 547
Y N E +E G + + +T+N + +Y G
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 548 --LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 605
L +S N L G+IP +IG++ + LNL +N+++G IP +L+ + LDLS NKL+G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 606 KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPIC 660
+IP + L L ++ NNLSG I E QF TF + + N LCG PLP C
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 141/536 (26%), Positives = 209/536 (38%), Gaps = 123/536 (22%)
Query: 45 LRDLEELDIGENKIDK-----FVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYL 99
L LE LD+ N I +V+S G +L++L++SG K++ + V + +L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV----DVSRCVNLEFL 205
Query: 100 DDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN-----LVVPQELRL---SDNHFRIPISL 151
D + + I + L+ LD+S NK+ + EL+L S N F PI
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 152 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFXXXXXXXXXXYGDGVTFPKF------ 205
PL L+ N+ EI + S YG P F
Sbjct: 266 LPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG---AVPPFFGSCSL 319
Query: 206 -------------------LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS 246
L L+ + LS + +GE P L + L TL L +++
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 247 LAGPFW--LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSF 304
+GP L + L L + NN G IP + + L ++S N L G+IPSS
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSL 438
Query: 305 GNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK----EGLY---------L 351
G++ L+ L L N L GEIP+ L L+ L+L N L GL L
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 352 TNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSC 411
+NN L+G IP W+G L L + + N G IP E SL LD++ N +G++P+
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 412 FHPLS---------------------IEQVHLSKNMLH------RQLKR----------- 433
S ++ H + N+L QL R
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 434 --------------------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 469
D+SYN+L+G IP IG + L L LGHN++ G +P
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 204/484 (42%), Gaps = 66/484 (13%)
Query: 217 LSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--WLPIHSHKRLGILDISNNNIRGH 274
LS+ +NG + + + L +L L +SL+GP + S L L++S+N +
Sbjct: 84 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 275 IPVEIGDVLPSLYVFNISMNALDGS------IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 328
V G L SL V ++S N++ G+ + G +K L + S N+++G++
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 195
Query: 329 AVGCVNLQFLMLSNNSLKEG------------LYLTNNSLSGNIPGWLGNLTWLIHIIMP 376
CVNL+FL +S+N+ G L ++ N LSG+ + T L + +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 377 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLS 436
N GPIP L SLQ L +++N +G +P L DLS
Sbjct: 256 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL-----------DLS 302
Query: 437 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGSIPPC 495
N G++P + G S L L L NN GE+P+ G +P
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 496 FDNT-----TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI----YQGKVLSLLS 546
N TL S NN F Q T Y+ + GK+ LS
Sbjct: 363 LTNLSASLLTLDLSSNN-------FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 547 ------GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L+LS N L G IP +G+L++++ L L N L G IP +K +E+L L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI- 659
N L G+IP L L S++ N L+GEI +W + N+F +P +
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 660 -CRS 662
CRS
Sbjct: 536 DCRS 539
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 164/413 (39%), Gaps = 77/413 (18%)
Query: 85 LSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------- 135
+ +L L+ L L F G L + +L LD+S N ++P
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 136 -QELRLSDNHF--RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFXXXXXXX 192
QEL L +N F +IP +L N S L H N ++ I S +
Sbjct: 396 LQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWL 451
Query: 193 XXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG--P 250
G+ P+ L + LE + L + GE P+ L N T L + L N+ L G P
Sbjct: 452 NMLEGE---IPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIP 507
Query: 251 FWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSF------ 304
W I + L IL +SNN+ G+IP E+GD SL +++ N +G+IP++
Sbjct: 508 KW--IGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 305 ------------------------GNMKFLQLLDLSNNQLT-------GEIPEHLAVGCV 333
G L+ + + QL I + G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 334 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS 393
+ F NN L ++ N LSG IP +G++ +L + + N + G IP E L
Sbjct: 625 SPTF---DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 394 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD 446
L ILD+S N + G +P L++ + DLS N L+G IP+
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLT------------EIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 148/535 (27%), Positives = 229/535 (42%), Gaps = 83/535 (15%)
Query: 205 FLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGIL 264
FL L+++ +S K++G+F + + T+L L + ++ GP +P K L L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 271
Query: 265 DISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG------------------- 305
++ N G IP + +L ++S N G++P FG
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 306 ------NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------- 346
M+ L++LDLS N+ +GE+PE L +L L LS+N+
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 347 --EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNI 404
+ LYL NN +G IP L N + L+ + + N+L G IP L L+ L + N +
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 405 SGSLPS-CFHPLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELS 452
G +P + ++E + L N L ++ LS N L G IP WIG L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 453 QLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPC-----------FDNTTL 501
L+ L L +N+ G +P +G+IP F
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 502 YESYNNSSSLDEKFEISFFIE--GPQGD----FTTKN----IAYIYQGKVLSLLSG---- 547
Y N E +E G + + +T+N + +Y G
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 548 --LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 605
L +S N L G+IP +IG++ + LNL +N+++G IP +L+ + LDLS NKL+G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 606 KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPIC 660
+IP + L L ++ NNLSG I E QF TF + + N LCG PLP C
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 204/484 (42%), Gaps = 66/484 (13%)
Query: 217 LSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--WLPIHSHKRLGILDISNNNIRGH 274
LS+ +NG + + + L +L L +SL+GP + S L L++S+N +
Sbjct: 81 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 275 IPVEIGDVLPSLYVFNISMNALDGS------IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 328
V G L SL V ++S N++ G+ + G +K L + S N+++G++
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 192
Query: 329 AVGCVNLQFLMLSNNSLKEG------------LYLTNNSLSGNIPGWLGNLTWLIHIIMP 376
CVNL+FL +S+N+ G L ++ N LSG+ + T L + +
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 377 ENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLS 436
N GPIP L SLQ L +++N +G +P L DLS
Sbjct: 253 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL-----------DLS 299
Query: 437 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGSIPPC 495
N G++P + G S L L L NN GE+P+ G +P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 496 FDNT-----TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYI----YQGKVLSLLS 546
N TL S NN F Q T Y+ + GK+ LS
Sbjct: 360 LTNLSASLLTLDLSSNN-------FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 547 ------GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L+LS N L G IP +G+L++++ L L N L G IP +K +E+L L +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPI- 659
N L G+IP L L S++ N L+GEI +W + N+F +P +
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 660 -CRS 662
CRS
Sbjct: 533 DCRS 536
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 141/536 (26%), Positives = 209/536 (38%), Gaps = 123/536 (22%)
Query: 45 LRDLEELDIGENKIDK-----FVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYL 99
L LE LD+ N I +V+S G +L++L++SG K++ + V + +L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV----DVSRCVNLEFL 202
Query: 100 DDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN-----LVVPQELRL---SDNHFRIPISL 151
D + + I + L+ LD+S NK+ + EL+L S N F PI
Sbjct: 203 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 152 EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFXXXXXXXXXXYGDGVTFPKF------ 205
PL L+ N+ EI + S YG P F
Sbjct: 263 LPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG---AVPPFFGSCSL 316
Query: 206 -------------------LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS 246
L L+ + LS + +GE P L + L TL L +++
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 247 LAGPFW--LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSF 304
+GP L + L L + NN G IP + + L ++S N L G+IPSS
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSL 435
Query: 305 GNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK----EGLY---------L 351
G++ L+ L L N L GEIP+ L L+ L+L N L GL L
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 352 TNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSC 411
+NN L+G IP W+G L L + + N G IP E SL LD++ N +G++P+
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 412 FHPLS---------------------IEQVHLSKNMLH------RQLKR----------- 433
S ++ H + N+L QL R
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 434 --------------------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 469
D+SYN+L+G IP IG + L L LGHN++ G +P
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 108/413 (26%), Positives = 164/413 (39%), Gaps = 77/413 (18%)
Query: 85 LSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP--------- 135
+ +L L+ L L F G L + +L LD+S N ++P
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 136 -QELRLSDNHF--RIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFXXXXXXX 192
QEL L +N F +IP +L N S L H N ++ I S +
Sbjct: 393 LQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWL 448
Query: 193 XXXYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG--P 250
G+ P+ L + LE + L + GE P+ L N T L + L N+ L G P
Sbjct: 449 NMLEGE---IPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIP 504
Query: 251 FWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSF------ 304
W I + L IL +SNN+ G+IP E+GD SL +++ N +G+IP++
Sbjct: 505 KW--IGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 305 ------------------------GNMKFLQLLDLSNNQLT-------GEIPEHLAVGCV 333
G L+ + + QL I + G
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 334 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS 393
+ F NN L ++ N LSG IP +G++ +L + + N + G IP E L
Sbjct: 622 SPTF---DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 394 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD 446
L ILD+S N + G +P L++ + DLS N L+G IP+
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLT------------EIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 102/246 (41%), Gaps = 43/246 (17%)
Query: 438 NLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFD 497
N L G IP I +L+QL +L + H N+ G +P G++PP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI- 145
Query: 498 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 557
SSL I+F G+ + I Y G L + + +S N+L G
Sbjct: 146 -----------SSLPNLVGITF-----DGNRISGAIPDSY-GSFSKLFTSMTISRNRLTG 188
Query: 558 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN-----------------------LKHIE 594
IPP NL + ++LS N L G F + K++
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 595 SLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 654
LDL N++ G +P L +LK L +V++NNL GEI + F+ S+Y N LCG
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306
Query: 655 LPLPIC 660
PLP C
Sbjct: 307 SPLPAC 312
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 269 NNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHL 328
NN+ G IP I L L+ I+ + G+IP +K L LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 329 AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL-IHIIMPENHLEGPIPVE 387
+ +L L+ G+ N +SG IP G+ + L + + N L G IP
Sbjct: 146 S----SLPNLV--------GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 388 FCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKR----------DLS 436
F L +L +D+S N + G F + +++HL+KN L L + DL
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 437 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 469
N + G++P + +L L L + NNL GE+P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 100/227 (44%), Gaps = 24/227 (10%)
Query: 202 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 261
P + L Y+ ++H ++G P++L + T L TL ++L+G I S L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 262 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 321
+ N I G IP G IS N L G IP +F N+ L +DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 322 GEIPEHLAVGCVNLQFLMLSNNSLK------------EGLYLTNNSLSGNIPGWLGNLTW 369
G+ L N Q + L+ NSL GL L NN + G +P L L +
Sbjct: 211 GDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 370 LIHIIMPENHLEGPIPVEFCQLYSLQILDIS----DNNISGS-LPSC 411
L + + N+L G IP Q +LQ D+S + + GS LP+C
Sbjct: 270 LHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 124/306 (40%), Gaps = 74/306 (24%)
Query: 300 IPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 358
IPSS N+ +L L + N L G IP +A L +L Y+T+ ++SG
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYL-----------YITHTNVSG 115
Query: 359 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIE 418
IP +L + L+ + N L G +P L +L + N ISG++P + S
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 419 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVXXXXXXXX 478
++ +S N L G IP L+ L+ + L N LEG+ V
Sbjct: 176 FTSMT-----------ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-------- 215
Query: 479 XXXXXXXXXXHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 538
L+ S N+ +K ++ KN
Sbjct: 216 ----------------------LFGSDKNT----QKIHLA------------KNSLAFDL 237
Query: 539 GKV-LSL-LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESL 596
GKV LS L+GL L N++ G +P + L + +LN+S+NNL G IP NL+ +
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Query: 597 DLSYNK 602
+ NK
Sbjct: 297 AYANNK 302
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 559 IPPQIGNLTRIQTLNLS-YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 617
IP + NL + L + NNL G IP + L + L +++ ++G IP L ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 618 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 656
+YN LSG + + +++GN +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI--LSSLTVFSSLR 95
D+K +L LE LDI NK+ V L L L I N+ I ++ L + ++L
Sbjct: 168 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLD 223
Query: 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIP 148
EL L+ K DI S NL LD++ N+I NL P EL+L N
Sbjct: 224 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-- 277
Query: 149 ISLEPLFNHSRLKIFHAKNNQM 170
++ PL + L NQ+
Sbjct: 278 -NISPLAGLTALTNLELNENQL 298
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ SL +L +LD+ N+I GL KL L L ++++ +S L ++L L
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNL 291
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
L++ + DI + NL L + +N I ++
Sbjct: 292 ELNENQLE---DISPISNLKNLTYLTLYFNNISDI 323
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI--LSSLTVFSSLR 95
D+K +L LE LDI NK+ V L L L I N+ I ++ L + ++L
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLD 224
Query: 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIP 148
EL L+ K DI S NL LD++ N+I NL P EL+L N
Sbjct: 225 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-- 278
Query: 149 ISLEPLFNHSRLKIFHAKNNQM 170
++ PL + L NQ+
Sbjct: 279 -NISPLAGLTALTNLELNENQL 299
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ SL +L +LD+ N+I GL KL L L ++++ +S L ++L L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNL 292
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
L++ + DI + NL L + +N I ++
Sbjct: 293 ELNENQLE---DISPISNLKNLTYLTLYFNNISDI 324
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI--LSSLTVFSSLR 95
D+K +L LE LDI NK+ V L L L I N+ I ++ L + ++L
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLD 220
Query: 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIP 148
EL L+ K DI S NL LD++ N+I NL P EL+L N
Sbjct: 221 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-- 274
Query: 149 ISLEPLFNHSRLKIFHAKNNQM 170
++ PL + L NQ+
Sbjct: 275 -NISPLAGLTALTNLELNENQL 295
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ SL +L +LD+ N+I GL KL L L ++++ +S L ++L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNL 288
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
L++ + DI + NL L + +N I ++
Sbjct: 289 ELNENQLE---DISPISNLKNLTYLTLYFNNISDI 320
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 540 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 599
K L+ L+ L LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 600 YNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEI 631
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ +L +L L + N+I K L L L LS + S +S+L+ +SL++L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL 156
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQEL 138
D++ + LE LD+S NK+ ++ V +L
Sbjct: 157 SFSSNQVT---DLKPLANLTTLERLDISSNKVSDISVLAKL 194
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI--LSSLTVFSSLR 95
D+K +L LE LDI NK+ V L L L I N+ I ++ L + ++L
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLD 219
Query: 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIP 148
EL L+ K DI S NL LD++ N+I NL P EL+L N
Sbjct: 220 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-- 273
Query: 149 ISLEPLFNHSRLKIFHAKNNQM 170
++ PL + L NQ+
Sbjct: 274 -NISPLAGLTALTNLELNENQL 294
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ SL +L +LD+ N+I GL KL L L ++++ +S L ++L L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNL 287
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
L++ + DI + NL L + +N I ++
Sbjct: 288 ELNENQLE---DISPISNLKNLTYLTLYFNNISDI 319
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI--LSSLTVFSSLR 95
D+K +L LE LDI NK+ V L L L I N+ I ++ L + ++L
Sbjct: 164 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLD 219
Query: 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIP 148
EL L+ K DI S NL LD++ N+I NL P EL+L N
Sbjct: 220 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-- 273
Query: 149 ISLEPLFNHSRLKIFHAKNNQM 170
++ PL + L NQ+
Sbjct: 274 -NISPLAGLTALTNLELNENQL 294
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYL-----------------SLSGIKL 80
D+ SL +L +LD+ N+I GL KL L +L+ ++L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 289
Query: 81 NHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELR- 139
N + L ++ S+L+ L F DI S L+ L S NK+ ++ L
Sbjct: 290 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 349
Query: 140 ---LSDNHFRIPISLEPLFNHSRL 160
LS H +I L PL N +R+
Sbjct: 350 INWLSAGHNQIS-DLTPLANLTRI 372
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI--LSSLTVFSSLR 95
D+K +L LE LDI NK+ V L L L I N+ I ++ L + ++L
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLD 220
Query: 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIP 148
EL L+ K DI S NL LD++ N+I NL P EL+L N
Sbjct: 221 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-- 274
Query: 149 ISLEPLFNHSRLKIFHAKNNQM 170
++ PL + L NQ+
Sbjct: 275 -NISPLAGLTALTNLELNENQL 295
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ SL +L +LD+ N+I GL KL L L ++++ +S L ++L L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNL 288
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
L++ + DI + NL L + +N I ++
Sbjct: 289 ELNENQLE---DISPISNLKNLTYLTLYFNNISDI 320
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 540 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 599
K L+ L+ L LS N I I G LT +Q LN S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 600 YNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEI 631
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ +L +L L + N+I K L L L LS + S +S+L+ +SL++L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL 156
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQEL 138
D++ + LE LD+S NK+ ++ V +L
Sbjct: 157 NFSSNQVT---DLKPLANLTTLERLDISSNKVSDISVLAKL 194
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI--LSSLTVFSSLR 95
D+K +L LE LDI NK+ V L L L I N+ I ++ L + ++L
Sbjct: 165 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL----IATNNQISDITPLGILTNLD 220
Query: 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVP-------QELRLSDNHFRIP 148
EL L+ K DI S NL LD++ N+I NL P EL+L N
Sbjct: 221 ELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-- 274
Query: 149 ISLEPLFNHSRLKIFHAKNNQM 170
++ PL + L NQ+
Sbjct: 275 -NISPLAGLTALTNLELNENQL 295
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYL-----------------SLSGIKL 80
D+ SL +L +LD+ N+I GL KL L +L+ ++L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 290
Query: 81 NHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELR- 139
N + L ++ S+L+ L F DI S L+ L S NK+ ++ L
Sbjct: 291 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 350
Query: 140 ---LSDNHFRIPISLEPLFNHSRL 160
LS H +I L PL N +R+
Sbjct: 351 INWLSAGHNQIS-DLTPLANLTRI 373
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 540 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 599
K L+ L+ L LS N I I G LT +Q L+ S N +T L P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 600 YNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEI 631
NK++ + +L L++L +A NN +I
Sbjct: 182 SNKVSDISVLAKLTNLESL----IATNNQISDI 210
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ +L +L L + N+I K L L L LS + S +S+L+ +SL++L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL 156
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQEL 138
D++ + LE LD+S NK+ ++ V +L
Sbjct: 157 SFSSNQVT---DLKPLANLTTLERLDISSNKVSDISVLAKL 194
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 19/144 (13%)
Query: 524 PQGDFTTKNIAYIYQGKVLSLLSG----------LYLSCNKLIGHIPPQI-GNLTRIQTL 572
P G T I Y++ ++ L G LYL N+L G +P + +LT++ L
Sbjct: 35 PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVL 93
Query: 573 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 632
+L N LT L + F L H++ L + NKL ++P + L L ++ N L
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK---- 148
Query: 633 EWTAQFATFNKSSYEGNTFLCGLP 656
+ F++ S + +L G P
Sbjct: 149 --SIPHGAFDRLSSLTHAYLFGNP 170
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 263 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLT 321
IL + +N I P + D L +L + N L G++P F ++ L +LDL NQLT
Sbjct: 44 ILYLHDNQITKLEP-GVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 322 GEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE 381
+P + V+L+ L + N L E +P + LT L H+ + +N L+
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLTE------------LPRGIERLTHLTHLALDQNQLK 148
Query: 382 GPIPVEFCQLYSL 394
F +L SL
Sbjct: 149 SIPHGAFDRLSSL 161
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 79 KLNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------D 130
KL + SL +L+ELYL G L + FDS L VLD+ N++ D
Sbjct: 54 KLEPGVFDSLI---NLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 131 NLVVPQELRLSDNHF-RIPISLEPLFNHSRLKIFHAKNNQMNA 172
LV +EL + N +P +E L + + L + NQ+ +
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 562 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVF 620
Q+ NL +Q LNLSYN GL F +E LD+++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 621 SVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 654
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 22/146 (15%)
Query: 42 FDSLRDLEELDIGENKIDKFVVS-KGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLD 100
F ++ELD+ ++ +G+ L+ L L+ + + F SLR+LY+
Sbjct: 273 FRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIK 332
Query: 101 DTGFKGTLDIREFDSFNNLEVLDMSYNKID------------------NLVVPQELRLSD 142
K L R + NL+ LD+S++ I+ NL + L L D
Sbjct: 333 GNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED 392
Query: 143 NHFRIPISLEPL---FNHSRLKIFHA 165
F+ LE L F H +K H+
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 45 LRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDDTGF 104
L +L L++ +N+I K L K+ L LSG L + +S++ S++ L L T
Sbjct: 68 LNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQI 125
Query: 105 KGTLDIREFDSFNNLEVLDMSYNKIDN------LVVPQELRLSDNHFRIPISLEPLFNHS 158
D+ +NL+VL + N+I N L Q L + +N L PL N S
Sbjct: 126 T---DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVN---DLTPLANLS 179
Query: 159 RLKIFHAKNNQM 170
+L A +N++
Sbjct: 180 KLTTLRADDNKI 191
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ +L + EL++ N + GL+ ++ L L+ ++ ++ L S+L+ L
Sbjct: 83 DLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVL 140
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKID------NLVVPQELRLSDNHFRIPISL 151
YLD +I NL+ L + N+++ NL LR DN +
Sbjct: 141 YLD---LNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKIS---DI 194
Query: 152 EPLFNHSRLKIFHAKNNQM 170
PL + L H K+NQ+
Sbjct: 195 SPLASLPNLIEVHLKDNQI 213
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
DV L +L+ L + N+I GL L+YLS+ ++N L+ L S L L
Sbjct: 127 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVND--LTPLANLSKLTTL 184
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
DD DI S NL + + N+I ++
Sbjct: 185 RADDNKIS---DISPLASLPNLIEVHLKDNQISDV 216
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 548 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 607
LYL N+ +P ++ N + ++LS N ++ L +FSN+ + +L LSYN+L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 608 PHQLVELKTLEVFSVAYNNLS 628
P LK+L + S+ N++S
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 565 NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 624
N+T++ TL LSYN L + P TF LK + L L N ++ +L L ++
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Query: 625 NNLSGEI-LEWTAQFATFNKSSYE 647
N L + ++W + + KS Y+
Sbjct: 136 NPLYCDCNMQWLSDWV---KSEYK 156
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 40/139 (28%)
Query: 282 VLPSLYVFNISMNALDGS----IPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 337
VLP +++ LDG+ +P N K L L+DLSNN+++
Sbjct: 24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS---------------- 67
Query: 338 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQIL 397
L+N S S N+T L+ +I+ N L P F L SL++L
Sbjct: 68 ------------TLSNQSFS--------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 398 DISDNNISGSLPSCFHPLS 416
+ N+IS F+ LS
Sbjct: 108 SLHGNDISVVPEGAFNDLS 126
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 562 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVF 620
Q+ NL+ +QTLNLS+N GL F +E LDL++ +L+ P + L L+V
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVL 427
Query: 621 SVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 654
++ Y L A + +GN F G
Sbjct: 428 NLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 42 FDSLRDLEELDIGENKIDKFVVS-KGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLD 100
F L+ELD+ + KGL L+ L LS + S F SL LY+
Sbjct: 271 FQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR 330
Query: 101 DTGFKGTLDIREFDSFNNLEVLDMSYNKID 130
K L + + NL+ LD+S+N I+
Sbjct: 331 GNVKKLHLGVGCLEKLGNLQTLDLSHNDIE 360
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 275 IPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 333
+P + + L L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 334 NLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNLT-----WLIHIIMPE 377
NL++L L +LK E L L+ N L PG LT WL+H +
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 378 NHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLH 428
F L SL+ L++S NN+ F PL +E+VHL+ N H
Sbjct: 217 IERNA-----FDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWH 263
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 42 FDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDD 101
F+ L +L L++G + L +L L LSG +L+ S +SLR+L+L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 102 TGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
T++ FD +LE L++S+N + +L
Sbjct: 212 AQV-ATIERNAFDDLKSLEELNLSHNNLMSL 241
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 531 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 590
K + YI + L++ YL+ P + L R++ L LS N L + P +F L
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 591 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 627
+ L L + ++ + +LK+LE ++++NNL
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 556 IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN---KLNGKIPHQLV 612
+ +P I TR LNL N++ + TF +L+H+E L LS N K+ + L
Sbjct: 26 LAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 613 ELKTLEVFSVAYNNLSGEILEWTAQF 638
L TLE+F + + E+ ++
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKL 109
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 275 IPVEIGDVLPSLYVFNISMNALDGSIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 333
+P + + L L + N ++ SIPS +F + L+ LDL + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 334 NLQFLMLSNNSLK-----------EGLYLTNNSLSGNIPGWLGNLT-----WLIHIIMPE 377
NL++L L +LK E L L+ N L PG LT WL+H +
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 378 NHLEGPIPVEFCQLYSLQILDISDNNISGSLP-SCFHPL-SIEQVHLSKNMLH 428
F L SL+ L++S NN+ SLP F PL +E+VHL+ N H
Sbjct: 217 IERNA-----FDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNPWH 263
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 42 FDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDD 101
F+ L +L L++G + L +L L LSG +L+ S +SLR+L+L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 102 TGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQEL 138
T++ FD +LE L++S+N + + +P +L
Sbjct: 212 AQV-ATIERNAFDDLKSLEELNLSHNNL--MSLPHDL 245
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 531 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 590
K + YI + L++ YL+ P + L R++ L LS N L + P +F L
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 591 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 627
+ L L + ++ + +LK+LE ++++NNL
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 556 IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN---KLNGKIPHQLV 612
+ +P I TR LNL N++ + TF +L+H+E L LS N K+ + L
Sbjct: 26 LAEVPASIPVNTRY--LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 613 ELKTLEVFSVAYNNLSGEILEWTAQF 638
L TLE+F + + E+ ++
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKL 109
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 45 LRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDDTGF 104
L +L L++ +N+I K L K+ L LSG L + +S++ S++ L L T
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQI 119
Query: 105 KGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELR----LSDNHFRIPISLEPLFNHSRL 160
D+ +NL+VL + N+I N+ L LS + ++ L PL N S+L
Sbjct: 120 T---DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKL 175
Query: 161 KIFHAKNNQM 170
A +N++
Sbjct: 176 TTLKADDNKI 185
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ +L + EL++ N + GL+ ++ L L+ ++ ++ L S+L+ L
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVL 134
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKID------NLVVPQELRLSDNHFRIPISL 151
YLD +I NL+ L + ++ NL L+ DN +
Sbjct: 135 YLD---LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---DI 188
Query: 152 EPLFNHSRLKIFHAKNNQM 170
PL + L H KNNQ+
Sbjct: 189 SPLASLPNLIEVHLKNNQI 207
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
DV L +L+ L + N+I GL L+YLS+ ++ S L+ L S L L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTL 178
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
DD DI S NL + + N+I ++
Sbjct: 179 KADDNKIS---DISPLASLPNLIEVHLKNNQISDV 210
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNDLTE 162
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A N+L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 532 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLK 591
NI I QG SL + L+L NK+ + L + L LS+N+++ + + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 592 HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 629
H+ L L+ NKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 281 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 340
D+ P + ++ N + F N+K L L L NN+++ P A V L+ L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYL 107
Query: 341 SNNSLKE----------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE--GPIPVEF 388
S N LKE L + N ++ L +I + + N L+ G F
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 389 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 429
+ L + I+D NI+ ++P P S+ ++HL N + +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 206
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A N L+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 532 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLK 591
NI I QG SL + L+L NK+ + L + L LS+N+++ + + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 592 HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 629
H+ L L+ NKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 281 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 340
D+ P + ++ N + F N+K L L L NN+++ P A V L+ L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYL 107
Query: 341 SNNSLKE----------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE--GPIPVEF 388
S N LKE L + N ++ L +I + + N L+ G F
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 389 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 429
+ L + I+D NI+ ++P P S+ ++HL N + +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 206
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 79 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN+L E
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A NNL+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 542 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 601
L+ L LYL N+L LT+++ L L+ N L + F L ++++L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 602 KLNGKIPH----QLVELKTLEVFSVAYNNLSGEIL 632
+L +PH +L +L+T+ +F ++ EIL
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 250 PFWLPIHSHK----RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 305
P +P + K G+ +S+ RG L L N+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 306 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 365
++ L L L+NNQL +L + + + + LYL N L G
Sbjct: 81 DLTELGTLGLANNQL------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 366 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLP 409
LT L + + N L+ F +L +LQ L +S N + S+P
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
LG LD+S+N ++ +P+ +G LP+L V ++S N L + + LQ L L N+L
Sbjct: 80 LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE 347
+P L L+ L L+NN+L E
Sbjct: 138 K-TLPPGLLTPTPKLEKLSLANNNLTE 163
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 541 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L +L L LS N+L +P L + L++S+N LT L L ++ L L
Sbjct: 76 TLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L LE S+A NNL+
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 40 KEFDSLRDLEELDIGENKIDKFVVS--KGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
K F L L L + +NK+ K L+ L L ++ KL + +L EL
Sbjct: 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHF-RIP 148
LD K +L R FDS L L + YN++ D L +ELRL +N R+P
Sbjct: 115 RLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Query: 149 ISLEPLFNH-SRLKIFHAKNNQM 170
E F+ + LK NNQ+
Sbjct: 174 ---EGAFDKLTELKTLKLDNNQL 193
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 545 LSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 603
L+ L L N+L +PP++ +LT++ L+L YN L L F L ++ L L N+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 604 NGKIPH----QLVELKTLEV 619
++P +L ELKTL++
Sbjct: 170 K-RVPEGAFDKLTELKTLKL 188
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 542 LSLLSGLYLSCNKLIGHIPPQI-GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600
L+ L LYL+ NKL +P I L ++TL ++ N L L F L ++ L L
Sbjct: 60 LTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 601 NKLNGKIPHQLVELKTLEVFSVAYNNLS 628
N+L P L L S+ YN L
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ L LE L +G NKI V L KL LSL ++ S + L + L+ L
Sbjct: 146 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 203
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDM--------SYNKIDNLVVPQELRLSDNHFRIP 148
YL D+R NL+VL++ N NLVVP ++ +D P
Sbjct: 204 YLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 259
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ L LE L +G NKI V L KL LSL ++ S + L + L+ L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 183
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDM--------SYNKIDNLVVPQELRLSDNHFRIP 148
YL D+R NL+VL++ N NLVVP ++ +D P
Sbjct: 184 YLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 566 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF--SVA 623
L R+Q LN+S+NNL L S ++ L + +LD S+N++ L+ F S+A
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 543
Query: 624 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEA 669
+ NL+ + + F + E FL + C +P M+ +
Sbjct: 544 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTS 589
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 281 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 340
D+ S ++S N L SF N LQ LDLS ++ E E A ++ L
Sbjct: 24 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLH----HL 77
Query: 341 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 400
SN L LT N + PG LT L +++ E L QL +L+ L+++
Sbjct: 78 SN------LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 401 DNNI-SGSLPSCFHPLS-IEQVHLSKNMLHRQLKRDLSY 437
N I S LP+ F L+ + V LS N + DL +
Sbjct: 132 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 563 IGNLTRIQTLNLSYNNL-TGLIPSTFSNLKHIESLDLSYN 601
IG L ++ LN+++N + + +P+ FSNL ++ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 566 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVF--SVA 623
L R+Q LN+S+NNL L S ++ L + +LD S+N++ L+ F S+A
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-------TSKGILQHFPKSLA 548
Query: 624 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEA 669
+ NL+ + + F + E FL + C +P M+ +
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTS 594
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 281 DVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 340
D+ S ++S N L SF N LQ LDLS ++ E E A ++ L
Sbjct: 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLH----HL 82
Query: 341 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 400
SN L LT N + PG LT L +++ E L QL +L+ L+++
Sbjct: 83 SN------LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 401 DNNI-SGSLPSCFHPLS-IEQVHLSKNMLHRQLKRDLSY 437
N I S LP+ F L+ + V LS N + DL +
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 563 IGNLTRIQTLNLSYNNL-TGLIPSTFSNLKHIESLDLSYN 601
IG L ++ LN+++N + + +P+ FSNL ++ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ L LE L +G NKI V L KL LSL ++ S + L + L+ L
Sbjct: 124 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 181
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDM--------SYNKIDNLVVPQELRLSDNHFRIP 148
YL D+R NL+VL++ N NLVVP ++ +D P
Sbjct: 182 YLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 237
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ L LE L +G NKI V L KL LSL ++ S + L + L+ L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 183
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDM--------SYNKIDNLVVPQELRLSDNHFRIP 148
YL D+R NL+VL++ N NLVVP ++ +D P
Sbjct: 184 YLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ L LE L +G NKI V L KL LSL ++ S + L + L+ L
Sbjct: 121 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SDIVPLACLTKLQNL 178
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDM--------SYNKIDNLVVPQELRLSDNHFRIP 148
YL D+R NL+VL++ N NLVVP ++ +D P
Sbjct: 179 YLSKNHIS---DLRALCGLKNLDVLELFSQEALNKPINHQSNLVVPNTVKNTDGSLVTP 234
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 542 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 601
L+ L LYL N+L LT+++ L L+ N L + F L ++++L LS N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 602 KLNGKIPH----QLVELKTLEVFSVAYNNLSGEIL 632
+L +PH +L +L+T+ +F ++ E L
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 250 PFWLPIHSHK----RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 305
P +P + K G+ +S+ RG L L N+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 306 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 365
++ L L L+NNQL +L + + + + LYL N L G
Sbjct: 81 DLTELGTLGLANNQL------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 366 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLP 409
LT L + + N L+ F +L +LQ L +S N + S+P
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 29/224 (12%)
Query: 259 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 318
K L +L+++ N I I E L +L V N+S N L S+F + + +DL N
Sbjct: 290 KDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 319 QLTGEIPEHLAVGCVNLQFLMLSNNSLKE--------GLYLTNNSLSGNIPGWLGNLTW- 369
+ I + LQ L L +N+L ++L+ N L +P NLT
Sbjct: 349 HI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKI--NLTAN 404
Query: 370 LIHIIMPENHLEGPIPVEF-CQLYSLQILDISDN---NISGSLPSCFHPLSIEQVHLSKN 425
LIH + EN LE + F ++ LQIL ++ N + SG +P S+EQ+ L +N
Sbjct: 405 LIH--LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGEN 461
Query: 426 MLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 469
ML + +L +++ G LS L L L HN L P
Sbjct: 462 MLQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPP 497
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 567 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
+ ++ L+LS+ + L F LK ++ L+L+YNK+N L L+V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 627 LSGEILEWTAQFATFNKSSY 646
L GE+ +++ F K +Y
Sbjct: 325 LLGEL--YSSNFYGLPKVAY 342
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 565 NLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL--KTLEVFS 621
NL + L+LS N + L + +F L ++S+D S N++ H+L L KTL FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 622 VAYNNLSGEI-LEW 634
+A N+L + ++W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 26/162 (16%)
Query: 566 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 625
L+ +Q L L++N L L P FS+L + L L+ N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 626 NL---------SGEILEWT-------AQFATFNKSSYEGNTFLCGLPLPI-CRSPATMSE 668
L S +L+ T + +TF N + G P I C P + S
Sbjct: 537 QLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG 596
Query: 669 ASI------GNERDDNLIDMD-SFFITFTTSYVIVIFAIVII 703
S+ G + ++ L + S FI T + + + I+ +
Sbjct: 597 VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTV 638
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 23/116 (19%)
Query: 564 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK---LNGKIPHQLVELKTLEVF 620
G L + L L N LTG+ P+ F HI+ L L NK ++ K+ L +LKTL ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 621 ----------------SVAYNNLSGEILEWTAQFATF----NKSSYEGNTFLCGLP 656
S+ NL+ A F K S G CG P
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 304 FGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE-------GLY------ 350
FG + L L+L NQLTG P G ++Q L L N +KE GL+
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 351 LTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILD-ISDNNISGSLP 409
L +N +S +PG +L L + + N C + + + +++G
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN-------CNCHLAWFAEWLRKKSLNGGAA 161
Query: 410 SCFHPLSIEQVHLSKNMLHRQLK 432
C P + V + K++ H + K
Sbjct: 162 RCGAPSKVRDVQI-KDLPHSEFK 183
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 567 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
T I LNL++N L L + F+ + SLD+ +N ++ P +L L+V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 627 LSGEILEWTAQFAT 640
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 283 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 342
L L + +++ +D S PS F ++ L +LDLSNN + + L G L+ L L +
Sbjct: 456 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 513
Query: 343 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISD 401
N+L L ++ G +L L+ L HI+ E++ IPVE F L+ L+I+D+
Sbjct: 514 NNLAR---LWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGL 569
Query: 402 NNISGSLPSCF-HPLSIEQVHLSKNML 427
NN++ S F + +S++ ++L KN++
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLI 596
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 42 FDSLRDLEELDIGENKID--KFVVSKGLRKLRYLSLSGIKLNHSILSSLT--VFSSLREL 97
F L+ LE L++ +N I K + GL L+YLSLS + + L +LT F SL
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN---SFTSLRTLTNETFVSLAHS 381
Query: 98 YLDDTGF-KGTLDIREFDSFN---NLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 150
L K + E D+F+ +LEVLD+ N+I + QE R +N F I +S
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 60/262 (22%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
+ +L++++N +R +P L ++ N + P + L++L+L +N+L
Sbjct: 27 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 367
+ ++ + C NL L L +NS+++ L L++N LS G L
Sbjct: 86 S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 368 TWLIHIIMPENHLEGPIPVEFCQLY---SLQILDISDNNISGSLPSCFHP---------- 414
L +++ N ++ + E ++ SL+ L++S N I P CFH
Sbjct: 145 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 415 -------------------------LSIEQVHLSKNMLHRQLK------RDLSYNLLNGS 443
LS Q+ + N LK DLSYN LN
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 444 IPDWIGELSQLSHLILGHNNLE 465
D L QL + L +NN++
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQ 285
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ L LE L +G NKI V L KL LSL ++ + L + L+ L
Sbjct: 124 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIV--PLARLTKLQNL 181
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDM--------SYNKIDNLVVPQELRLSDNHFRIP 148
YL D+R NL+VL++ N NLVVP ++ +D P
Sbjct: 182 YLSKNHIS---DLRALRGLKNLDVLELFSQEALNKPINHQSNLVVPNTVKNTDGSLVTP 237
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 567 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
T I LNL++N L L + F+ + SLD+ +N ++ P +L L+V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 627 LSGEILEWTAQFAT 640
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 283 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 342
L L + +++ +D S PS F ++ L +LDLSNN + + L G L+ L L +
Sbjct: 466 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 523
Query: 343 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISD 401
N+L L ++ G +L L+ L HI+ E++ IPVE F L+ L+I+D+
Sbjct: 524 NNLAR---LWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGL 579
Query: 402 NNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKR 433
NN++ S F + +S++ ++L KN++ K+
Sbjct: 580 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 612
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 42 FDSLRDLEELDIGENKID--KFVVSKGLRKLRYLSLSGIKLNHSILSSLT--VFSSLREL 97
F L+ LE L++ +N I K + GL L+YLSLS + + L +LT F SL
Sbjct: 335 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN---SFTSLRTLTNETFVSLAHS 391
Query: 98 YLDDTGF-KGTLDIREFDSFN---NLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 150
L K + E D+F+ +LEVLD+ N+I + QE R +N F I +S
Sbjct: 392 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 448
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 60/262 (22%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
+ +L++++N +R +P L ++ N + P + L++L+L +N+L
Sbjct: 37 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 367
+ ++ + C NL L L +NS+++ L L++N LS G L
Sbjct: 96 S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 154
Query: 368 TWLIHIIMPENHLEGPIPVEFCQLY---SLQILDISDNNISGSLPSCFHP---------- 414
L +++ N ++ + E ++ SL+ L++S N I P CFH
Sbjct: 155 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 213
Query: 415 -------------------------LSIEQVHLSKNMLHRQLK------RDLSYNLLNGS 443
LS Q+ + N LK DLSYN LN
Sbjct: 214 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 273
Query: 444 IPDWIGELSQLSHLILGHNNLE 465
D L QL + L +NN++
Sbjct: 274 GNDSFAWLPQLEYFFLEYNNIQ 295
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 567 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
T I LNL++N L L + F+ + SLD+ +N ++ P +L L+V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 627 LSGEILEWTAQFAT 640
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 283 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 342
L L + +++ +D S PS F ++ L +LDLSNN + + L G L+ L L +
Sbjct: 461 LQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQH 518
Query: 343 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVE-FCQLYSLQILDISD 401
N+L L ++ G +L L+ L HI+ E++ IPVE F L+ L+I+D+
Sbjct: 519 NNLAR---LWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGL 574
Query: 402 NNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKR 433
NN++ S F + +S++ ++L KN++ K+
Sbjct: 575 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 607
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 42 FDSLRDLEELDIGENKID--KFVVSKGLRKLRYLSLSGIKLNHSILSSLT--VFSSLREL 97
F L+ LE L++ +N I K + GL L+YLSLS + + L +LT F SL
Sbjct: 330 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN---SFTSLRTLTNETFVSLAHS 386
Query: 98 YLDDTGF-KGTLDIREFDSFN---NLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 150
L K + E D+F+ +LEVLD+ N+I + QE R +N F I +S
Sbjct: 387 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 443
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 60/262 (22%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
+ +L++++N +R +P L ++ N + P + L++L+L +N+L
Sbjct: 32 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 367
+ ++ + C NL L L +NS+++ L L++N LS G L
Sbjct: 91 S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 149
Query: 368 TWLIHIIMPENHLEGPIPVEFCQLY---SLQILDISDNNISGSLPSCFHP---------- 414
L +++ N ++ + E ++ SL+ L++S N I P CFH
Sbjct: 150 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 208
Query: 415 -------------------------LSIEQVHLSKNMLHRQLK------RDLSYNLLNGS 443
LS Q+ + N LK DLSYN LN
Sbjct: 209 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 268
Query: 444 IPDWIGELSQLSHLILGHNNLE 465
D L QL + L +NN++
Sbjct: 269 GNDSFAWLPQLEYFFLEYNNIQ 290
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ L LE L +G NKI V L KL LSL ++ S + L + L+ L
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 180
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDM--------SYNKIDNLVVPQELRLSDNHFRIP 148
YL D+R NL+VL++ N NLVVP ++ +D P
Sbjct: 181 YLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 567 TRIQTLNLSYNNLTGLIPSTFSNLK--HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 624
T IQ L+L+ N L STFS LK ++ LDLSYN L+ L +L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 625 NNL 627
NN+
Sbjct: 282 NNI 284
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 42 FDSLRDLEELDIGENKIDKFVVS---KGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELY 98
F L L LD+G N+I++ + +GLR + + LS K SS + SL+ L
Sbjct: 401 FSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLM 460
Query: 99 LDDTGFKGTLDI--REFDSFNNLEVLDMSYNKIDNL 132
L K +DI F NL +LD+S N I N+
Sbjct: 461 LRRVALKN-VDISPSPFRPLRNLTILDLSNNNIANI 495
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 285 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 344
SL ++S N L P F + L L L+N QL + E L LSN S
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLC--------WELSNTS 223
Query: 345 LKEGLYLTNNSLSGNIPGWLGNLTW--LIHIIMPENHLEGPIPVEFCQLYSLQILDISDN 402
+ + L L NN L L W L + + N+L F L SL+ L + N
Sbjct: 224 I-QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 403 NISGSLPSCFHPLS 416
NI P F+ LS
Sbjct: 283 NIQRLSPRSFYGLS 296
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 18/200 (9%)
Query: 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQL 320
+ +L++++N +R P L + + N++ P + L++L+L +N+L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRY-SQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 321 TGEIPEHLAVGCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNL 367
+ +I + V C NL L L +NS+ + L L++N LS G L
Sbjct: 86 S-QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 368 TWLIHIIMPENHLEG--PIPVEFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSK 424
L +++ +N + +EF SL+ LD+S N + P CF + + + L+
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNN 204
Query: 425 NMLHRQLKRDLSYNLLNGSI 444
L+ L L + L N SI
Sbjct: 205 AQLNPHLTEKLCWELSNTSI 224
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 159/408 (38%), Gaps = 86/408 (21%)
Query: 258 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG------------------- 298
+ +L ILD N+I P E+ +LP L V N+ N L
Sbjct: 48 YSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMS 106
Query: 299 ----SIPSS-FGNMKFLQLLDLSNNQLTG-----------------EIPEHLAVGCVNLQ 336
I S+ F N K L LDLS+N L+ + LA+ L+
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELE 166
Query: 337 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC---QLYS 393
FL N+SL++ L L++N L PG + L +++ L + + C S
Sbjct: 167 FL--GNSSLRK-LDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTS 223
Query: 394 LQILDISDNNISGSLPSCFHPL---SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE 450
+Q L +++N + + S F L ++ Q+ LS N LH SY
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSY------------- 270
Query: 451 LSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGSIPPCFDNTTLYESYNNSSS 510
L L +L L +NN++ P + S+ F ++ S + +
Sbjct: 271 LPSLRYLSLEYNNIQRLSP---------RSFYGLSNLRYLSLKRAFTKQSV--SLASHPN 319
Query: 511 LDE-KFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRI 569
+D+ F+ ++E D NI L+S YLS +K + + N T +
Sbjct: 320 IDDFSFQWLKYLEYLNMD--DNNIPSTKSNTFTGLVSLKYLSLSKTFTSL-QTLTNETFV 376
Query: 570 Q-------TLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 610
TLNL+ N+++ + TFS L + LDL N++ K+ Q
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 545 LSGLYLSCNKLIGHIPPQIGNL--TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 602
+ L L+ N+L+ L T + L+LSYNNL + +FS L + L L YN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 603 LNGKIPHQLVELKTLEVFSVA 623
+ P L L S+
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLK 304
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 42 FDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDD 101
+L+ + L + N I+K G+ LR LSL G L I + V +L EL++
Sbjct: 45 LSTLKACKHLALSTNNIEKISSLSGMENLRILSL-GRNLIKKIENLDAVADTLEELWIS- 102
Query: 102 TGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFN 156
+ + + NL VL MS NKI N +L D + ++ PL+N
Sbjct: 103 --YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 155
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 42 FDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDD 101
+L+ + L + N I+K G+ LR LSL G L I + V +L EL++
Sbjct: 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSL-GRNLIKKIENLDAVADTLEELWIS- 101
Query: 102 TGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFN 156
+ + + NL VL MS NKI N +L D + ++ PL+N
Sbjct: 102 --YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 562 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 606
Q+ NL+ +Q+LNLSYN L F +E LDL++ +L K
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 563 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 622
+ L R++ L LS+ +L+ + F++LK + +DLS+N+L L LK + ++
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530
Query: 623 AYNNLS 628
A N++S
Sbjct: 531 ASNHIS 536
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 568 RIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
+IQ + + YNNL + ++ K + L+ YN+L GK+P E+K L ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYN- 363
Query: 627 LSGEILEWTAQFATF 641
+I E A F F
Sbjct: 364 ---QITEIPANFCGF 375
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
Query: 536 IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL-KHIE 594
+ + K L L LY N+L G +P G+ ++ +LNL+YN +T IP+ F + +E
Sbjct: 326 LQKXKKLGXLECLY---NQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVE 380
Query: 595 SLDLSYNKLNGKIPHQLVELKTLEVFSV---AYNNL 627
+L ++NKL IP+ + + K++ V S +YN +
Sbjct: 381 NLSFAHNKLK-YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 259 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 318
+ L L + NNN++ + D+ P L +S N L+ +P N FL+++D+ NN
Sbjct: 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNN 163
Query: 319 QLTGEIPEHLAVGCVNLQFLMLSNNSLKE-----------GLYLTNNSLSGNIPGWLGNL 367
L + L +L+F+ NN L+E +Y NNSL L +L
Sbjct: 164 SL-----KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-----LPDL 213
Query: 368 TWLIHIIMPENHLEGPIPVEFCQLYSLQILDI--SDNNISGSLPSCFHPLSIEQVHLSKN 425
+ I+ N+ I E +L +L L +DNN+ +LP P S+E +++ N
Sbjct: 214 PLSLESIVAGNN----ILEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN 267
Query: 426 ML 427
L
Sbjct: 268 YL 269
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 23/91 (25%)
Query: 42 FDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDD 101
F DLE+L + +N+I+K + L +L +KLN S
Sbjct: 295 FSHFTDLEQLTLAQNEINK-IDDNAFWGLTHL----LKLNLS------------------ 331
Query: 102 TGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
F G++D R F++ + LEVLD+SYN I L
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 535 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIE 594
+ ++G S + LS +K+ + + T ++ L L+ N + + + F L H+
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 595 SLDLSYNKLNGKIPHQLVE-LKTLEVFSVAYNNLSG 629
L+LS N L G I ++ E L LEV ++YN++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 566 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 625
LT + LNLS N L + F NL +E LDLSYN + + L L+ ++ N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 626 NL 627
L
Sbjct: 382 QL 383
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 66 GLRKLRYLSLSGIKLNHSILSS--LTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLD 123
GL L L+L+ L+ ++LS +SL L L D K F + VLD
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
Query: 124 MSYNKIDNLVVPQELRLSDNHFRI 147
+++NK+ ++ L HF +
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTL 184
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 565 NLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLEVFSVA 623
NL +++ L+LSYN++ L +F L +++ L L N+L +P + + L +L+ +
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLH 403
Query: 624 YN--NLSGEILEWTAQFATFNKSSYEGNTFLCGLPLP----ICRSPATM 666
N + S +++ +++ N +G+ G P IC + A++
Sbjct: 404 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICPTSASL 452
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 566 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH----QLVELKTLEVF 620
LT + LNL++N L L F L ++ LDLSYN+L +P +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLY 189
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 39 VKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELY 98
V+ L ++ L +G NK+ K L L YL L+G +L ++L+EL
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 99 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKI--------DNLVVPQELRLSDNHFR-IPI 149
L + + D FD NL L++++N++ D L EL LS N + +P
Sbjct: 116 LVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP- 173
Query: 150 SLEPLFNH-SRLKIFHAKNNQMNA 172
E +F+ ++LK NQ+ +
Sbjct: 174 --EGVFDKLTQLKDLRLYQNQLKS 195
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 334 NLQFLMLSNN------SLKE-----GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 382
N+++L L N +LKE L LT N L G LT L +++ EN L+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
F +L +L L+++ N + SLP + L + DLSYN L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVF-----------DKLTNLTELDLSYNQLQ- 170
Query: 443 SIPDWI-GELSQLSHLILGHNNLE 465
S+P+ + +L+QL L L N L+
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLK 194
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%)
Query: 531 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 590
K ++YI +G L + YL+ P + L ++ L+LS N+L+ + P +F L
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 591 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 628
H++ L + +++ + L++L ++A+NNL+
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 299 SIPS-SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE---------- 347
SIPS +F + L+ LDL + I E G NL++L L+ +L+E
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209
Query: 348 -GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 406
L L+ N LS PG L L + M ++ ++ F L SL ++++ NN++
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
Query: 407 SLPSCFHPL-SIEQVHLSKN 425
F PL +E++HL N
Sbjct: 270 LPHDLFTPLHHLERIHLHHN 289
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 264 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 323
LD+S+N +R P L L V S NAL+ N+ LQ L L NN+L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 324 IPEHLAVGCVNLQFLMLSNNSL--KEGL 349
V C L L L NSL +EG+
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 60 KFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL----YLDDTGFKGTLDIREFDS 115
KF++ + K+ Y + + L H LTV L +L +LD + + +
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHK---DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAA 484
Query: 116 FNNLEVLDMSYNKIDN------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ 169
LEVL S N ++N L QEL L +N + +++PL + RL + + + N
Sbjct: 485 LRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544
Query: 170 MNAE 173
+ E
Sbjct: 545 LCQE 548
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 264 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 323
LD+S+N +R P L L V S NAL+ N+ LQ L L NN+L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 324 IPEHLAVGCVNLQFLMLSNNSL--KEGL 349
V C L L L NSL +EG+
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 60 KFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL----YLDDTGFKGTLDIREFDS 115
KF++ + K+ Y + + L H LTV L +L +LD + + +
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHK---DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAA 484
Query: 116 FNNLEVLDMSYNKIDN------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ 169
LEVL S N ++N L QEL L +N + +++PL + RL + + + N
Sbjct: 485 LRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544
Query: 170 MNAE 173
+ E
Sbjct: 545 LCQE 548
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 611
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 42 FDSLRDLEELDIGENKI-DKFV--VSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELY 98
F+ L LE L + N + F+ + LR L +L LS +L ++ SSL+ L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 99 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 129
+ F +LD + N+L+VLD S N I
Sbjct: 501 MSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 527 DFTTKNIAYIYQGKV-LSLLSGLYLSCNKLIGHIPPQIG------NLTRIQTLNLSYNNL 579
DF N+ + + V LSL + +YL I H ++ L+ ++ L ++ N+
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 580 T-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
+P F+ L+++ LDLS +L P L +L+V ++++NN
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 545 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 604
L+ L LS +L P +L+ +Q LN+S+NN L + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 605 GKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPA 664
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 532 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 242 LVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALD---G 298
LVN L + S KRL +N G+ E+ LPSL ++S N L
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTF----TSNKGGNAFSEVD--LPSLEFLDLSRNGLSFKGC 364
Query: 299 SIPSSFG--NMKFLQL-----LDLSNNQLTGEIPEHLAVGCVNLQ-------FLMLSN-- 342
S FG ++K+L L + +S+N L E EHL NL+ FL L N
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 343 -----------------NSLK--EGLYLTNNSLSGN-IPGWLGNLTWLIHIIMPENHLEG 382
N L E L + NS N +P L L + + + LE
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 383 PIPVEFCQLYSLQILDISDNN 403
P F L SLQ+L++S NN
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNN 505
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 42 FDSLRDLEELDIGEN--KIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL-Y 98
F SLR+L LDI ++ + GL L L ++G + L +F+ LR L +
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTF 474
Query: 99 LDDTGFK-GTLDIREFDSFNNLEVLDMSYN 127
LD + + L F+S ++L+VL+MS+N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 611
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 527 DFTTKNIAYIYQGKV-LSLLSGLYLSCNKLIGHIPPQIG------NLTRIQTLNLSYNNL 579
DF N+ + + V LSL + +YL I H ++ L+ ++ L ++ N+
Sbjct: 426 DFQHSNLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Query: 580 T-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
+P F+ L+++ LDLS +L P L +L+V ++++NN
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 42 FDSLRDLEELDIGENKI-DKFV--VSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELY 98
F+ L LE L + N + F+ + LR L +L LS +L ++ SSL+ L
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 99 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 129
+ F +LD + N+L+VLD S N I
Sbjct: 525 MSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 79/201 (39%), Gaps = 45/201 (22%)
Query: 242 LVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALD---- 297
LVN L + S KRL +N G+ E+ LPSL ++S N L
Sbjct: 335 LVNCKFGQFPTLKLKSLKRLTF----TSNKGGNAFSEVD--LPSLEFLDLSRNGLSFKGC 388
Query: 298 ------GSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ-------FLMLSN-- 342
G+I + ++ F ++ +S+N L E EHL NL+ FL L N
Sbjct: 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448
Query: 343 -----------------NSLK--EGLYLTNNSLSGN-IPGWLGNLTWLIHIIMPENHLEG 382
N L E L + NS N +P L L + + + LE
Sbjct: 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508
Query: 383 PIPVEFCQLYSLQILDISDNN 403
P F L SLQ+L++S NN
Sbjct: 509 LSPTAFNSLSSLQVLNMSHNN 529
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 545 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 604
L+ L LS +L P +L+ +Q LN+S+NN L + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 605 GKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPA 664
+L + S+A+ NL+ T + +F + + L + C +P+
Sbjct: 556 TSKKQELQHFPS----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 42 FDSLRDLEELDIGEN--KIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL-Y 98
F SLR+L LDI ++ + GL L L ++G + L +F+ LR L +
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTF 498
Query: 99 LDDTGFK-GTLDIREFDSFNNLEVLDMSYN 127
LD + + L F+S ++L+VL+MS+N
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG------KIPHQL 611
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 605
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 605
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 605
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 605
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 563 IGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNKLNG 605
IG+L ++ LN+++N + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|4DKO|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKO|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Ts-Ii-224
pdb|4DKP|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKP|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-50
pdb|4DKQ|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Dmj-I-228
pdb|4DKR|A Chain A, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DKR|C Chain C, Crystal Structure Of Clade AE 93TH057 HIV-1 Gp120 Core In
Complex With Aws-I-169
pdb|4DVS|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVS|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Nbd-557
pdb|4DVT|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVT|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-ii-37
pdb|4DVV|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVV|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With As-i-261
pdb|4DVW|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVW|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-167
pdb|4DVX|A Chain A, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
pdb|4DVX|B Chain B, Crystal Structure Of Clade A/e 93th057 Hiv-1 Gp120 Core In
Complex With Mae-ii-188
Length = 353
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
PIP+ +C IL +D N +G+ P C + S++ H K ++ QL LLNG
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL-------LLNG 147
Query: 443 SIPD 446
S+ +
Sbjct: 148 SLAE 151
>pdb|3NGB|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|A Chain A, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|D Chain D, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3NGB|I Chain I, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc01 In Complex With Hiv-1 Gp120
pdb|3SE8|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
pdb|3SE9|G Chain G, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|3TGT|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade AE STRAIN
93TH057 GP120 Core
Length = 353
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
PIP+ +C IL +D N +G+ P C + S++ H K ++ QL LLNG
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL-------LLNG 147
Query: 443 SIPD 446
S+ +
Sbjct: 148 SLAE 151
>pdb|3U7Y|G Chain G, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
Hiv
Length = 361
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
PIP+ +C IL +D N +G+ P C + S++ H K ++ QL LLNG
Sbjct: 96 PIPIHYCTPAGYVILKCNDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQL-------LLNG 147
Query: 443 SIPD 446
S+ +
Sbjct: 148 SLAE 151
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 349 LYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE--GPIPVEFCQLYSLQILDISDNNIS- 405
L +NN L+ + G+LT L +I+ N L+ I Q+ SLQ LDIS N++S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 406 -GSLPSCFHPLSIEQVHLSKNMLHRQLKR---------DLSYNLLNGSIPDWIGELSQLS 455
C S+ +++S N+L + R DL N + SIP + +L L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQ 447
Query: 456 HLILGHNNLEGEVP 469
L + N L+ VP
Sbjct: 448 ELNVASNQLKS-VP 460
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 563 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 622
I +L++++ L +S+N + L S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 623 AYNNL 627
A++ L
Sbjct: 101 AFDAL 105
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 66 GLRKLRYLSLSGIKLNHSILSS--LTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLD 123
GL L L+L+ L+ ++LS +SL L L D K F + VLD
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
Query: 124 MSYNKIDNLVVPQELRLSDNHFRI 147
+++NK+ ++ L HF +
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTL 184
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 524 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 583
P G TT + Y+Y ++ L G++ LT++ L+L N LT L
Sbjct: 33 PTGIPTTTQVLYLYDNQITKLEPGVF--------------DRLTQLTRLDLDNNQLTVLP 78
Query: 584 PSTFSNLKHIESLDLSYNKL 603
F L + L L+ N+L
Sbjct: 79 AGVFDKLTQLTQLSLNDNQL 98
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 275 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 334
+P I LY+++ + L+ P F + L LDL NNQLT +P +
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 87
Query: 335 LQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN 378
L L L++N LK +IP G NL L HI + N
Sbjct: 88 LTQLSLNDNQLK------------SIPRGAFDNLKSLTHIWLLNN 120
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 546 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 603
SG + C+ K + +P I T Q L L N +T L P F L + LDL N+L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 524 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 583
P G TT + Y+Y ++ L G++ LT++ L+L N LT L
Sbjct: 25 PTGIPTTTQVLYLYDNRITKLEPGVF--------------DRLTQLTRLDLDNNQLTVLP 70
Query: 584 PSTFSNLKHIESLDLSYNKL 603
F L + L L+ N+L
Sbjct: 71 AGVFDKLTQLTQLSLNDNQL 90
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 275 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 334
+P I LY+++ + L+ P F + L LDL NNQLT +P +
Sbjct: 24 VPTGIPTTTQVLYLYDNRITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79
Query: 335 LQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN 378
L L L++N LK +IP G NL L HI + N
Sbjct: 80 LTQLSLNDNQLK------------SIPRGAFDNLRSLTHIWLLNN 112
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 546 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 603
SG + C+ K + +P I T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 524 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 583
P G TT + ++Y ++ L G++ S LT++ LNL+ N LT L
Sbjct: 35 PAGIPTTTQVLHLYINQITKLEPGVFDS--------------LTQLTYLNLAVNQLTALP 80
Query: 584 PSTFSNLKHIESLDLSYNKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIL---EWTA 636
F L + L L N+L IP L L + +F+ ++ +IL W
Sbjct: 81 VGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIV 139
Query: 637 QFAT 640
Q A+
Sbjct: 140 QHAS 143
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 524 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 583
P G TT + Y+Y ++ L G++ LT++ L+L N LT L
Sbjct: 25 PTGIPTTTQVLYLYDNQITKLEPGVF--------------DRLTQLTRLDLDNNQLTVLP 70
Query: 584 PSTFSNLKHIESLDLSYNKL 603
F L + L L+ N+L
Sbjct: 71 AGVFDKLTQLTQLSLNDNQL 90
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 275 IPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 334
+P I LY+++ + L+ P F + L LDL NNQLT +P +
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79
Query: 335 LQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN 378
L L L++N LK +IP G NL L HI + N
Sbjct: 80 LTQLSLNDNQLK------------SIPRGAFDNLKSLTHIWLLNN 112
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 546 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 603
SG + C+ K + +P I T Q L L N +T L P F L + LDL N+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 266 ISNN--NIRGHIPVEIGDVLP-SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 322
SNN + RG EI LP ++ + N + P +F K L+ +DLSNNQ++
Sbjct: 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 323 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 382
P+ G +L L+L N + E +P L + + +++ +
Sbjct: 71 LAPDAFQ-GLRSLNSLVLYGNKITE------------LPKSLFEGLFSLQLLLLNANKIN 117
Query: 383 PIPVE-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 425
+ V+ F L++L +L + DN + F PL +I+ +HL++N
Sbjct: 118 XLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 266 ISNN--NIRGHIPVEIGDVLP-SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG 322
SNN + RG EI LP ++ + N + P +F K L+ +DLSNNQ++
Sbjct: 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 323 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 382
P+ G +L L+L N + E +P L + + +++ +
Sbjct: 71 LAPDAFQ-GLRSLNSLVLYGNKITE------------LPKSLFEGLFSLQLLLLNANKIN 117
Query: 383 PIPVE-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 425
+ V+ F L++L +L + DN + F PL +I+ +HL++N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 42/201 (20%)
Query: 290 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLT------GEIPEHLAVGCVNLQFL---ML 340
N +M L ++ SF ++ L L DL ++ + L +G +++L +
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119
Query: 341 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 400
N L L L N LS G N L + M N+LE F SLQ L +S
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 401 DNNIS----GSLPSCFH-------------PLSIEQVHLSKNMLHRQLKRDLSYNLLNGS 443
N ++ +PS FH P+++E++ S N S N++ G
Sbjct: 180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN----------SINVVRGP 229
Query: 444 IPDWIGELSQLSHLILGHNNL 464
+ +L+ L L HNNL
Sbjct: 230 VN------VELTILKLQHNNL 244
>pdb|3HI1|G Chain G, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
pdb|3HI1|J Chain J, Structure Of Hiv-1 Gp120 (Core With V3) In Complex With
Cd4-Binding- Site Antibody F105
Length = 321
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 50 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 101
Query: 443 SIPD 446
S+ +
Sbjct: 102 SLAE 105
>pdb|2QAD|A Chain A, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|E Chain E, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 322
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 51 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 102
Query: 443 SIPD 446
S+ +
Sbjct: 103 SLAE 106
>pdb|1G9N|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|G Chain G, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1YYL|G Chain G, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYL|P Chain P, Crystal Structure Of Cd4m33, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|1YYM|G Chain G, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|1YYM|P Chain P, Crystal Structure Of F23, A Scorpion-Toxin Mimic Of Cd4,
In Complex With Hiv-1 Yu2 Gp120 Envelope Glycoprotein
And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|G Chain G, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I5Y|P Chain P, Crystal Structure Of Cd4m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|G Chain G, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
pdb|2I60|P Chain P, Crystal Structure Of [phe23]m47, A Scorpion-Toxin Mimic Of
Cd4, In Complex With Hiv-1 Yu2 Gp120 Envelope
Glycoprotein And Anti-Hiv-1 Antibody 17b
Length = 313
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 368 TWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 427
T +I P+ E PIP+ +C IL +D +G+ P C + +++ H + ++
Sbjct: 56 TSVITQACPKVSFE-PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVV 113
Query: 428 HRQLKRDLSYNLLNGSIPD 446
QL LLNGS+ +
Sbjct: 114 STQL-------LLNGSLAE 125
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 42 FDSLRDLEELDIGENKIDK-FV--VSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELY 98
F+ L LE L + N + F+ + LR L +L LS +L ++ SSL+ L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 99 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 129
+ F +LD + N+L+VLD S N I
Sbjct: 206 MSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 527 DFTTKNIAYIYQGKV-LSLLSGLYLSCNKLIGHIPPQIG------NLTRIQTLNLSYNNL 579
DF N+ + + V LSL + +YL I H ++ L+ ++ L ++ N+
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLD----ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 580 T-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 626
+P F+ L+++ LDLS +L P L +L+V ++++NN
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 42 FDSLRDLEELDIGEN--KIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL-Y 98
F SLR+L LDI ++ + GL L L ++G + L +F+ LR L +
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTF 179
Query: 99 LDDTGFK-GTLDIREFDSFNNLEVLDMSYN 127
LD + + L F+S ++L+VL+MS+N
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 560 PPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 619
P +L+ +Q LN+S+NN L + L ++ LD S N + +L +
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--- 248
Query: 620 FSVAYNNLSGEILEWTAQFATF 641
S+A+ NL+ T + +F
Sbjct: 249 -SLAFLNLTQNDFACTCEHQSF 269
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 544 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 603
L+ LYL+ N L +P +I NL+ ++ L+LS+N LT L P+ + ++ ++ +
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYF-FDNM 304
Query: 604 NGKIPHQLVELKTLEVFSVAYNNLSGEILE 633
+P + L L+ V N L + L+
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 16/75 (21%)
Query: 283 LPSLYVFNISMNA----------LDGS----IPSSFGNMKFLQLLDLSNNQLTGEIPEHL 328
L +L +FNIS N L+G+ +P+ N+ L++LDLS+N+LT +P L
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 329 AVGCVNLQFLMLSNN 343
C L++ +N
Sbjct: 290 G-SCFQLKYFYFFDN 303
>pdb|3TGQ|A Chain A, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|B Chain B, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|C Chain C, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
pdb|3TGQ|D Chain D, Crystal Structure Of Unliganded Hiv-1 Clade B Strain Yu2
Gp120 Core
Length = 352
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 96 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 147
Query: 443 SIPD 446
S+ +
Sbjct: 148 SLAE 151
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 31/150 (20%)
Query: 300 IPSSFGN-MKFLQLLDLSNNQLTGEIPEHLAVGCV--NLQFLMLSNNSLKEGLYLTNNSL 356
+P SF +K L+ LDLS N + E ++ A +LQ L+LS N +L +
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN------HLRSMQK 378
Query: 357 SGNIPGWLGNLTWL------IHIIMPEN------------HLEGPIPVEFCQLYSLQILD 398
+G I L NLT L H MP++ G V+ C +L++LD
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD 437
Query: 399 ISDNNISGSLPSCFHPLSIEQVHLSKNMLH 428
+S+NN+ S F P ++++++S+N L
Sbjct: 438 VSNNNLDSF--SLFLP-RLQELYISRNKLK 464
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 236 KLATLFLVNDSLAGPFWLPIHSH--KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISM 293
+L TL L + L F + + + L LD+S N++ H S+ V N+S
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 294 NALDGS---------------------IPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC 332
N L GS IP +++ LQ L++++NQL +P+ +
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRL 496
Query: 333 VNLQFLMLSNN 343
+LQ++ L +N
Sbjct: 497 TSLQYIWLHDN 507
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 527 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPST 586
D++ +N+ ++ + + L LS N + P I L+ ++ L LS+N + L
Sbjct: 37 DYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95
Query: 587 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSY 646
F + +E LD+S+N+L + L+ L+ +++N+ ++L +F K ++
Sbjct: 96 FLFNQDLEYLDVSHNRLQNISCCPMASLRHLD---LSFNDF--DVLPVCKEFGNLTKLTF 150
Query: 647 EG 648
G
Sbjct: 151 LG 152
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 31/150 (20%)
Query: 300 IPSSFGN-MKFLQLLDLSNNQLTGEIPEHLAVGCV--NLQFLMLSNNSLKEGLYLTNNSL 356
+P SF +K L+ LDLS N + E ++ A +LQ L+LS N +L +
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN------HLRSMQK 404
Query: 357 SGNIPGWLGNLTWL------IHIIMPEN------------HLEGPIPVEFCQLYSLQILD 398
+G I L NLT L H MP++ G V+ C +L++LD
Sbjct: 405 TGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD 463
Query: 399 ISDNNISGSLPSCFHPLSIEQVHLSKNMLH 428
+S+NN+ S F P ++++++S+N L
Sbjct: 464 VSNNNLDSF--SLFLP-RLQELYISRNKLK 490
>pdb|4DVR|G Chain G, Crystal Structure Of Yu2 Gp120 Core In Complex With Fab
48d And Nbd- 557
Length = 313
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 383 PIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442
PIP+ +C IL +D +G+ P C + +++ H + ++ QL LLNG
Sbjct: 57 PIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQL-------LLNG 108
Query: 443 SIPD 446
S+ +
Sbjct: 109 SLAE 112
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 542 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 601
L+ L+ LYL NKL LT + LNLS N L L F L ++ L L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 602 KLNG---KIPHQLVELKTLEVF 620
+L + +L +LK L ++
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLY 132
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 42/201 (20%)
Query: 290 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLT------GEIPEHLAVGCVNLQFL---ML 340
N +M L ++ SF ++ L L DL ++ + L +G +++L +
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113
Query: 341 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDIS 400
N L L L N LS G N L + M N+LE F SLQ L +S
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 401 DNNIS----GSLPSCFH-------------PLSIEQVHLSKNMLHRQLKRDLSYNLLNGS 443
N ++ +PS FH P+++E++ S N S N++ G
Sbjct: 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN----------SINVVRGP 223
Query: 444 IPDWIGELSQLSHLILGHNNL 464
+ +L+ L L HNNL
Sbjct: 224 VN------VELTILKLQHNNL 238
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 38 DVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLREL 97
D+ +L L L+IG N+I K L KL+ L++ ++ S +S L S L L
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSL 292
Query: 98 YLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132
+L++ G D NL L +S N I ++
Sbjct: 293 FLNNNQL-GNEDXEVIGGLTNLTTLFLSQNHITDI 326
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 374 IMPENHLEGPIP-VEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK-NMLHR 429
I+PENH+ P+ EF Q S IL + ++ H +S E HLSK MLHR
Sbjct: 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHR 69
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 19/159 (11%)
Query: 274 HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 333
++P +L + + NAL G ++F + L+ LDLS+N + G
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 334 NLQFLMLSNNSLKE-------------GLYLTNNSLSG---NIPGWLGNLTWLIHIIMPE 377
+L L L L+E LYL +N+L N LGNLT H+ +
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT---HLFLHG 161
Query: 378 NHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 416
N + F L+SL L + N+++ P F L
Sbjct: 162 NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 13/156 (8%)
Query: 274 HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 333
H+P +L + + N L ++F + L+ LDLS+N + G
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 334 NLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL 380
L L L L+E LYL +N+L +L L H+ + N +
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 381 EGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLS 416
F L+SL L + N ++ P F L
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 43/114 (37%)
Query: 540 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLS 599
+ L+ L LYL N L +L + L L N ++ + F L ++ L L
Sbjct: 125 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 184
Query: 600 YNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLC 653
N++ PH +L L + NNLS E A N ++C
Sbjct: 185 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 520 FIEGPQG--------DFTTKNIAYIYQGKVLSL--LSGLYLSCNKLIGHIPPQIGNLTRI 569
F+ P+G D I + Q + S L L L+ N + P NL +
Sbjct: 23 FVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 570 QTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 627
+TL L N L + F+ L ++ LD+S NK+ + + +L L+ V N+L
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Query: 299 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------ 346
SIPS G + ++ LDLSNN++T I CVNLQ L+L++N +
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 347 -EGLYLTNNSLSGNIPGW---LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 399
E L L+ N LS W L +LT+L + P L G + F L LQIL +
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSL-FSHLTKLQILRV 130
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 346 KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 405
K+ L+L NN ++ PG +L L + N L F +L L LD++DN++
Sbjct: 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 406 GSLPSCFHPL-SIEQVHLSKN 425
F L S+ ++L N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 18/197 (9%)
Query: 233 NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNIS 292
N K+ T A P +P S + + + N I H+P +L + +
Sbjct: 10 NEPKVTTSCPQQGLQAVPVGIPAASQR----IFLHGNRI-SHVPAASFRACRNLTILWLH 64
Query: 293 MNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKE----- 347
N L ++F + L+ LDLS+N + G L L L L+E
Sbjct: 65 SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124
Query: 348 --------GLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 399
LYL +N+L +L L H+ + N + F L+SL L +
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 400 SDNNISGSLPSCFHPLS 416
N ++ P F L
Sbjct: 185 HQNRVAHVHPHAFRDLG 201
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Query: 299 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK------------ 346
SIPS G + ++ LDLSNN++T I CVNLQ L+L++N +
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 347 -EGLYLTNNSLSGNIPGW---LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 399
E L L+ N LS W L +LT+L + P L G + F L LQIL +
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSL-FSHLTKLQILRV 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,925,034
Number of Sequences: 62578
Number of extensions: 861451
Number of successful extensions: 2503
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 605
length of query: 740
length of database: 14,973,337
effective HSP length: 106
effective length of query: 634
effective length of database: 8,340,069
effective search space: 5287603746
effective search space used: 5287603746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)