Query 004640
Match_columns 740
No_of_seqs 456 out of 3792
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-59 4.7E-64 558.8 45.1 537 2-656 74-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-54 3.7E-59 516.7 45.7 528 7-657 58-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.5E-43 1.6E-47 351.0 5.5 379 186-637 79-462 (873)
4 KOG4194 Membrane glycoprotein 100.0 8E-41 1.7E-45 336.4 8.2 394 210-675 78-492 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.5E-39 3.1E-44 313.6 -12.8 484 20-628 44-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.2E-38 9.1E-43 303.6 -13.5 493 40-652 39-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.7E-35 3.7E-40 314.1 -5.0 506 1-625 2-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.1E-33 2.3E-38 300.5 -2.4 434 2-490 26-466 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.3E-37 278.6 -2.5 359 189-627 11-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 9.2E-32 2E-36 273.0 -2.5 346 201-623 46-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.8E-27 3.9E-32 230.2 -3.0 110 540-651 271-381 (498)
12 KOG4237 Extracellular matrix p 99.9 1.5E-26 3.3E-31 223.7 -3.8 375 22-425 68-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.3E-25 226.1 27.8 111 360-487 794-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 9.4E-21 2E-25 226.6 25.8 131 448-626 774-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 4E-21 8.7E-26 212.5 18.0 263 261-635 203-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.8E-20 6.1E-25 205.8 16.9 63 544-611 403-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.9E-19 1.3E-23 196.9 13.0 180 261-489 180-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.8E-18 3.8E-23 193.1 11.8 225 260-580 200-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 7.9E-19 1.7E-23 182.9 -0.5 84 544-627 222-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 6.7E-18 1.4E-22 175.9 -1.0 266 288-630 2-293 (319)
21 KOG0617 Ras suppressor protein 99.6 2.3E-18 5E-23 148.1 -6.1 182 367-633 32-217 (264)
22 KOG0617 Ras suppressor protein 99.6 2.9E-17 6.3E-22 141.4 -3.8 163 443-653 47-213 (264)
23 PLN03150 hypothetical protein; 99.4 4.4E-13 9.6E-18 149.8 13.0 118 544-661 419-538 (623)
24 PF14580 LRR_9: Leucine-rich r 99.3 1.1E-12 2.4E-17 119.4 4.8 124 3-131 3-127 (175)
25 KOG0532 Leucine-rich repeat (L 99.1 1.4E-12 3E-17 133.4 -4.4 157 311-500 78-234 (722)
26 KOG1259 Nischarin, modulator o 99.1 8.7E-12 1.9E-16 117.6 0.6 133 450-631 282-415 (490)
27 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.4E-15 124.0 9.2 60 284-346 116-176 (394)
28 PF14580 LRR_9: Leucine-rich r 99.1 6.2E-11 1.3E-15 108.1 4.7 121 28-171 4-126 (175)
29 COG4886 Leucine-rich repeat (L 99.1 2.5E-10 5.4E-15 122.4 8.1 46 561-608 249-294 (394)
30 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.8E-16 126.5 -2.9 192 260-486 76-270 (722)
31 PLN03150 hypothetical protein; 99.0 5.8E-10 1.3E-14 124.9 7.9 114 477-633 419-533 (623)
32 KOG1259 Nischarin, modulator o 99.0 4E-11 8.8E-16 113.1 -1.6 108 19-132 282-389 (490)
33 KOG3207 Beta-tubulin folding c 99.0 7.2E-11 1.6E-15 117.5 -0.4 187 208-405 119-314 (505)
34 PF13855 LRR_8: Leucine rich r 98.9 5.1E-10 1.1E-14 83.8 3.2 60 544-603 2-61 (61)
35 PF13855 LRR_8: Leucine rich r 98.9 6.1E-10 1.3E-14 83.3 3.5 61 567-627 1-61 (61)
36 KOG1909 Ran GTPase-activating 98.9 2.3E-10 5E-15 110.9 1.3 115 206-320 181-310 (382)
37 KOG0531 Protein phosphatase 1, 98.9 2.2E-10 4.7E-15 122.8 -0.0 247 283-633 71-323 (414)
38 KOG3207 Beta-tubulin folding c 98.9 3.2E-10 6.9E-15 113.0 0.6 153 17-170 142-313 (505)
39 KOG1909 Ran GTPase-activating 98.9 4.5E-10 9.8E-15 108.9 1.1 251 17-297 26-311 (382)
40 KOG0531 Protein phosphatase 1, 98.8 4.5E-10 9.7E-15 120.4 -1.2 127 259-405 72-199 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.6 4E-08 8.7E-13 112.6 5.6 128 235-378 523-652 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.6 4.1E-08 8.9E-13 112.5 5.5 105 20-127 544-652 (889)
43 KOG1859 Leucine-rich repeat pr 98.5 1.2E-09 2.5E-14 115.3 -7.8 84 543-629 209-293 (1096)
44 KOG1644 U2-associated snRNP A' 98.4 4.8E-07 1E-11 81.4 6.3 108 22-132 20-128 (233)
45 KOG2120 SCF ubiquitin ligase, 98.4 9.2E-09 2E-13 97.5 -5.4 172 46-246 185-374 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 6.3E-09 1.4E-13 110.0 -7.6 109 15-129 181-291 (1096)
47 KOG2982 Uncharacterized conser 98.3 1.1E-07 2.5E-12 90.2 0.4 79 47-127 46-131 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.2 3.9E-07 8.4E-12 85.6 0.5 65 257-321 240-316 (388)
49 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 2.9E-12 89.8 -4.3 176 22-200 186-377 (419)
50 KOG2982 Uncharacterized conser 98.1 5.3E-07 1.1E-11 85.9 -0.7 63 542-604 198-262 (418)
51 KOG4579 Leucine-rich repeat (L 98.1 1.1E-07 2.3E-12 79.9 -4.8 88 544-634 78-165 (177)
52 PF12799 LRR_4: Leucine Rich r 98.1 4.9E-06 1.1E-10 56.7 4.1 40 22-63 2-41 (44)
53 KOG1644 U2-associated snRNP A' 98.0 6.4E-06 1.4E-10 74.4 4.9 122 2-128 24-151 (233)
54 KOG4579 Leucine-rich repeat (L 98.0 2.5E-07 5.5E-12 77.7 -4.3 93 306-412 51-143 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 9.4E-06 2E-10 55.3 3.8 36 47-82 2-38 (44)
56 COG5238 RNA1 Ran GTPase-activa 97.9 1.6E-06 3.5E-11 81.5 -0.9 192 206-405 26-255 (388)
57 PF13306 LRR_5: Leucine rich r 97.8 5E-05 1.1E-09 66.9 6.0 102 231-339 8-109 (129)
58 KOG2739 Leucine-rich acidic nu 97.8 1.6E-05 3.6E-10 75.1 2.9 95 37-132 35-131 (260)
59 PF13306 LRR_5: Leucine rich r 97.7 6.4E-05 1.4E-09 66.2 6.1 85 253-342 6-90 (129)
60 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.6E-10 86.9 2.1 84 43-128 145-231 (699)
61 KOG3665 ZYG-1-like serine/thre 97.4 3.9E-05 8.5E-10 86.1 0.8 199 19-241 58-281 (699)
62 PRK15386 type III secretion pr 97.4 0.00037 7.9E-09 72.0 7.6 77 387-488 47-124 (426)
63 KOG4341 F-box protein containi 97.4 1.6E-05 3.4E-10 79.7 -2.6 298 22-339 139-458 (483)
64 KOG4341 F-box protein containi 97.4 5.7E-06 1.2E-10 82.8 -5.8 281 46-344 138-437 (483)
65 KOG2123 Uncharacterized conser 97.4 4.9E-06 1.1E-10 78.6 -6.0 103 18-123 16-123 (388)
66 PRK15386 type III secretion pr 97.2 0.0012 2.7E-08 68.2 8.7 33 452-486 72-104 (426)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00053 1.1E-08 65.2 1.5 109 13-125 35-151 (260)
68 KOG2123 Uncharacterized conser 96.6 0.00016 3.5E-09 68.7 -3.7 92 2-98 24-123 (388)
69 KOG1947 Leucine rich repeat pr 95.5 0.0026 5.5E-08 70.4 -1.4 107 20-127 187-305 (482)
70 PF00560 LRR_1: Leucine Rich R 94.2 0.021 4.6E-07 32.1 0.9 11 570-580 3-13 (22)
71 TIGR00864 PCC polycystin catio 93.8 0.044 9.6E-07 68.9 3.5 74 597-676 1-75 (2740)
72 PF00560 LRR_1: Leucine Rich R 93.4 0.04 8.7E-07 31.0 1.1 12 70-81 2-13 (22)
73 smart00369 LRR_TYP Leucine-ric 92.6 0.12 2.6E-06 30.4 2.3 23 307-330 1-23 (26)
74 smart00370 LRR Leucine-rich re 92.6 0.12 2.6E-06 30.4 2.3 23 307-330 1-23 (26)
75 smart00370 LRR Leucine-rich re 92.5 0.14 3E-06 30.2 2.5 23 20-43 1-23 (26)
76 smart00369 LRR_TYP Leucine-ric 92.5 0.14 3E-06 30.2 2.5 23 20-43 1-23 (26)
77 PF13504 LRR_7: Leucine rich r 92.1 0.098 2.1E-06 27.2 1.4 8 49-56 4-11 (17)
78 PF13504 LRR_7: Leucine rich r 90.9 0.15 3.2E-06 26.6 1.3 12 310-321 3-14 (17)
79 KOG0473 Leucine-rich repeat pr 90.6 0.0046 9.9E-08 57.5 -7.8 87 14-103 35-122 (326)
80 KOG4308 LRR-containing protein 89.7 0.0039 8.5E-08 67.2 -10.6 40 259-298 262-304 (478)
81 KOG0473 Leucine-rich repeat pr 89.2 0.0089 1.9E-07 55.7 -7.1 92 36-130 32-124 (326)
82 KOG4308 LRR-containing protein 88.5 0.0064 1.4E-07 65.5 -10.1 175 23-199 89-303 (478)
83 KOG3864 Uncharacterized conser 86.5 0.12 2.6E-06 47.5 -1.5 80 22-102 102-186 (221)
84 KOG1947 Leucine rich repeat pr 85.1 0.36 7.8E-06 53.2 1.0 12 367-378 294-305 (482)
85 KOG3864 Uncharacterized conser 83.5 0.2 4.3E-06 46.1 -1.5 75 2-79 106-187 (221)
86 PF13516 LRR_6: Leucine Rich r 83.5 0.33 7.2E-06 27.8 -0.1 16 68-83 2-17 (24)
87 smart00365 LRR_SD22 Leucine-ri 77.6 2.1 4.6E-05 25.2 1.9 14 47-60 3-16 (26)
88 PF08693 SKG6: Transmembrane a 72.8 4.1 8.9E-05 26.7 2.5 27 686-712 12-38 (40)
89 KOG3763 mRNA export factor TAP 64.8 2.9 6.4E-05 44.8 1.0 14 616-629 271-284 (585)
90 TIGR00864 PCC polycystin catio 61.6 4 8.7E-05 52.5 1.5 37 621-657 1-37 (2740)
91 KOG3763 mRNA export factor TAP 60.8 3.9 8.4E-05 43.9 1.0 36 43-78 215-254 (585)
92 smart00364 LRR_BAC Leucine-ric 59.9 6.1 0.00013 23.2 1.3 18 308-326 2-19 (26)
93 KOG4242 Predicted myosin-I-bin 59.1 23 0.0005 37.5 6.1 61 544-604 414-481 (553)
94 smart00368 LRR_RI Leucine rich 57.7 8 0.00017 23.1 1.6 13 592-604 3-15 (28)
95 PTZ00382 Variant-specific surf 53.8 27 0.00059 28.4 4.6 20 686-705 68-87 (96)
96 KOG4242 Predicted myosin-I-bin 53.1 78 0.0017 33.8 8.7 82 20-104 164-253 (553)
97 PF04478 Mid2: Mid2 like cell 46.6 13 0.00029 32.6 1.9 16 685-700 50-65 (154)
98 PF08374 Protocadherin: Protoc 38.8 37 0.0008 31.8 3.5 23 684-706 38-60 (221)
99 PF15102 TMEM154: TMEM154 prot 35.1 20 0.00044 31.3 1.2 10 702-711 77-86 (146)
100 PHA03099 epidermal growth fact 34.4 18 0.0004 30.5 0.8 28 691-718 107-134 (139)
101 smart00367 LRR_CC Leucine-rich 33.7 30 0.00065 20.0 1.5 11 46-56 2-12 (26)
102 PF02009 Rifin_STEVOR: Rifin/s 32.7 25 0.00053 35.5 1.6 24 690-713 261-284 (299)
103 PF08114 PMP1_2: ATPase proteo 30.5 66 0.0014 21.1 2.6 7 707-713 30-36 (43)
104 PF01102 Glycophorin_A: Glycop 27.6 21 0.00045 30.5 0.0 12 688-699 68-79 (122)
105 PF15050 SCIMP: SCIMP protein 25.4 28 0.00061 28.9 0.4 24 690-713 13-36 (133)
106 PTZ00046 rifin; Provisional 24.4 36 0.00079 34.9 1.1 30 687-716 317-346 (358)
107 PF12191 stn_TNFRSF12A: Tumour 24.4 48 0.001 28.1 1.6 12 704-715 99-110 (129)
108 PF04689 S1FA: DNA binding pro 24.1 1E+02 0.0022 22.5 2.9 27 686-712 14-40 (69)
109 TIGR01477 RIFIN variant surfac 23.2 40 0.00087 34.5 1.2 29 688-716 313-341 (353)
110 PTZ00370 STEVOR; Provisional 20.7 39 0.00084 33.3 0.5 7 689-695 257-263 (296)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-59 Score=558.77 Aligned_cols=537 Identities=31% Similarity=0.442 Sum_probs=422.0
Q ss_pred eecCCCCCCcccchhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccccCCCCCCCEEEcCCCccc
Q 004640 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLN 81 (740)
Q Consensus 2 LdLs~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~l~~L~~L~Ls~n~l~ 81 (740)
|||++|.+++..+..|..+++|++|+|++|.+.+.+|.+.|..+++|++|+|++|++++..+...+++|++|+|++|.+.
T Consensus 74 L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~ 153 (968)
T PLN00113 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS 153 (968)
T ss_pred EEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccc
Confidence 56666666666666666666677777776666656665555566667777776666665555556666666666666666
Q ss_pred ccCcccccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCCCCCcEEEccCCCCcCcCChhhhccCCCCc
Q 004640 82 HSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLK 161 (740)
Q Consensus 82 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 161 (740)
+..|..+.++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.. .++ ..+..+.+|+
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~----------------~~p-~~l~~l~~L~ 215 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVG----------------QIP-RELGQMKSLK 215 (968)
T ss_pred ccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcC----------------cCC-hHHcCcCCcc
Confidence 66666666666666666666666655555 56666666666666555432 222 2345555566
Q ss_pred EEEccCCcccccccccccCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEE
Q 004640 162 IFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLF 241 (740)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 241 (740)
.|++++|. +.+.+|..+..+++|+.|++++|.+.+.+|..+ .++++|+.|+
T Consensus 216 ~L~L~~n~----------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ 266 (968)
T PLN00113 216 WIYLGYNN----------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLF 266 (968)
T ss_pred EEECcCCc----------------------------cCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEE
Confidence 66555544 334566677788888888888888887777765 6888888888
Q ss_pred cCCCcccccCcCCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCC
Q 004640 242 LVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLT 321 (740)
Q Consensus 242 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 321 (740)
+++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 8888888888888888888888888888888777766554 788888888888888888888888888888888888888
Q ss_pred CCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccC
Q 004640 322 GEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISD 401 (740)
Q Consensus 322 ~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 401 (740)
+.+|..+ ..+++|+.|++++|.+.. ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 346 ~~~p~~l-~~~~~L~~L~Ls~n~l~~-----------~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 346 GEIPKNL-GKHNNLTVLDLSTNNLTG-----------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CcCChHH-hCCCCCcEEECCCCeeEe-----------eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 7777654 368888888877776553 5777788888888889988888888888888888899999999
Q ss_pred CcCcccCCCCcC-CCCcceEEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCE
Q 004640 402 NNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQL 480 (740)
Q Consensus 402 n~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 480 (740)
|++++..|..+. ++.|+.+++++|.+.+ .+|..+..+++|+.|++++|++.+..|..+ ..++|+.
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~ 479 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQG-------------RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLEN 479 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccC-------------ccChhhccCCCCcEEECcCceeeeecCccc-ccccceE
Confidence 988888777776 7788888666665543 666677788999999999999998888765 5689999
Q ss_pred EEccCCcccccCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCCc
Q 004640 481 LDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP 560 (740)
Q Consensus 481 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 560 (740)
|++++|++++..|..|..+. +|+.|+|++|.+.+.+|
T Consensus 480 L~ls~n~l~~~~~~~~~~l~-------------------------------------------~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 480 LDLSRNQFSGAVPRKLGSLS-------------------------------------------ELMQLKLSENKLSGEIP 516 (968)
T ss_pred EECcCCccCCccChhhhhhh-------------------------------------------ccCEEECcCCcceeeCC
Confidence 99999999988888776644 89999999999999999
Q ss_pred ccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCCccccccCcccccccc
Q 004640 561 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFAT 640 (740)
Q Consensus 561 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 640 (740)
..+.++++|++|+|++|.+++.+|..|.++++|++|++++|++++.+|..+..+++|+.+++++|++.+.+|.. ..+..
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~ 595 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLA 595 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974 66778
Q ss_pred cCcccccCCCCCCCCC
Q 004640 641 FNKSSYEGNTFLCGLP 656 (740)
Q Consensus 641 ~~~~~~~~n~~~c~~~ 656 (740)
+....+.+|+..|+.+
T Consensus 596 ~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 596 INASAVAGNIDLCGGD 611 (968)
T ss_pred cChhhhcCCccccCCc
Confidence 8888899999998643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-54 Score=516.74 Aligned_cols=528 Identities=29% Similarity=0.441 Sum_probs=458.6
Q ss_pred CCCCcccchhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCc-ccc--cCCCCCCCEEEcCCCccccc
Q 004640 7 NSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK-FVV--SKGLRKLRYLSLSGIKLNHS 83 (740)
Q Consensus 7 n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~-~~~--~~~l~~L~~L~Ls~n~l~~~ 83 (740)
|.+.++.+. ...+++.|++++|.+++.++ .+|..+++|++|+|++|++++ ++. +..+++|++|+|++|++++.
T Consensus 58 c~w~gv~c~---~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~ 133 (968)
T PLN00113 58 CLWQGITCN---NSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133 (968)
T ss_pred CcCcceecC---CCCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc
Confidence 444555443 23578999999999987676 789999999999999999874 443 55899999999999999877
Q ss_pred CcccccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCCCCCcEEEccCCCCcCcCChhhhccCCCCcEE
Q 004640 84 ILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIF 163 (740)
Q Consensus 84 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 163 (740)
.|. ..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+... ++ ..+..+++|++|
T Consensus 134 ~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~----------------~p-~~~~~l~~L~~L 193 (968)
T PLN00113 134 IPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGK----------------IP-NSLTNLTSLEFL 193 (968)
T ss_pred cCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCccccc----------------CC-hhhhhCcCCCee
Confidence 664 4588999999999999877776 788888888888887766422 22 235666777777
Q ss_pred EccCCcccccccccccCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcC
Q 004640 164 HAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLV 243 (740)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 243 (740)
++++|.+ .+.+|..+..+++|+.|++++|.+.+.+|..+ ..+++|++|+++
T Consensus 194 ~L~~n~l----------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~ 244 (968)
T PLN00113 194 TLASNQL----------------------------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLV 244 (968)
T ss_pred eccCCCC----------------------------cCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECc
Confidence 7766543 34567788889999999999999999899886 799999999999
Q ss_pred CCcccccCcCCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCC
Q 004640 244 NDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 323 (740)
Q Consensus 244 ~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 323 (740)
+|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 99999999999999999999999999999888887765 88999999999999999999999999999999999999977
Q ss_pred CchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCc
Q 004640 324 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNN 403 (740)
Q Consensus 324 ~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 403 (740)
+|..+ ..+++|+.|++++|.+. +..|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|+
T Consensus 324 ~~~~~-~~l~~L~~L~L~~n~l~-----------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 324 IPVAL-TSLPRLQVLQLWSNKFS-----------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred CChhH-hcCCCCCEEECcCCCCc-----------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 76654 57999999998877665 3688889999999999999999999999999999999999999999
Q ss_pred CcccCCCCcC-CCCcceEEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEE
Q 004640 404 ISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLD 482 (740)
Q Consensus 404 ~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 482 (740)
+.+..|..+. +++|+.|++++|++.+ ..|..+..++.|+.|++++|.+++..+..+..+++|+.|+
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~-------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSG-------------ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeee-------------ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 9998888776 8899999777776654 6778899999999999999999999998889999999999
Q ss_pred ccCCcccccCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCCccc
Q 004640 483 LSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ 562 (740)
Q Consensus 483 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 562 (740)
+++|++.+..|..+.. ++|+.|++++|++++..|..
T Consensus 459 L~~n~~~~~~p~~~~~--------------------------------------------~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 459 LARNKFFGGLPDSFGS--------------------------------------------KRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred CcCceeeeecCccccc--------------------------------------------ccceEEECcCCccCCccChh
Confidence 9999999877765432 37999999999999999999
Q ss_pred ccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCCccccccCcccccccccC
Q 004640 563 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFN 642 (740)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 642 (740)
|.++++|++|+|++|++++..|..+.++++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..+.
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred cccccCCCCCCCCCC
Q 004640 643 KSSYEGNTFLCGLPL 657 (740)
Q Consensus 643 ~~~~~~n~~~c~~~~ 657 (740)
.+++.+|+..+..|.
T Consensus 575 ~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 575 QVNISHNHLHGSLPS 589 (968)
T ss_pred EEeccCCcceeeCCC
Confidence 999999999887663
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-43 Score=351.01 Aligned_cols=379 Identities=23% Similarity=0.252 Sum_probs=283.1
Q ss_pred cccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcccccCcCCCCCCCCcCEEE
Q 004640 186 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 265 (740)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 265 (740)
..+.|++ +++.+...-+..+.++++|+++++..|.++ .+|... .....++.|+|.+|.|+.+....++.++.|++||
T Consensus 79 ~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 4455666 555555555677788889999999888887 677643 3455689999999999888888888889999999
Q ss_pred cccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcc
Q 004640 266 ISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSL 345 (740)
Q Consensus 266 ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 345 (740)
||.|.|+ ++|...|..-+++++|+|++|.|+.+....|.++.+|.+|.|+.|+++ .+|...|+.+++|+.|+|..|+|
T Consensus 156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence 9999988 888777766678999999999999888888998999999999999998 89999998899999999888887
Q ss_pred cceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCc-CCCCcceEEccC
Q 004640 346 KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSK 424 (740)
Q Consensus 346 ~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~ 424 (740)
.. .---+|.++++|+.|.|..|.|.......|..+.++++|+|+.|++..+..++. ++..|+.|+++.
T Consensus 234 ri-----------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 234 RI-----------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ee-----------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 74 224568888888888888888888888888888888888888888887766553 367777775444
Q ss_pred cccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCccccccccc
Q 004640 425 NMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYES 504 (740)
Q Consensus 425 n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 504 (740)
|.+ ..+.++...-+++|++|+|++|+|+...+..|..+..|++|.|++|++.......|..+
T Consensus 303 NaI-------------~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l----- 364 (873)
T KOG4194|consen 303 NAI-------------QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL----- 364 (873)
T ss_pred hhh-------------heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-----
Confidence 443 33445555666777777777777777777777777777777777777765544444443
Q ss_pred ccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCCc---ccccCcccCceEecCCcccCc
Q 004640 505 YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP---PQIGNLTRIQTLNLSYNNLTG 581 (740)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~ 581 (740)
++|++|||++|.++..+. ..|.+|++|+.|+|.+|++..
T Consensus 365 --------------------------------------ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 365 --------------------------------------SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred --------------------------------------hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 367777777777764433 236777777777777777777
Q ss_pred cCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCCcccccc-Cccccc
Q 004640 582 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI-LEWTAQ 637 (740)
Q Consensus 582 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l~~~~-~~~~~~ 637 (740)
+...+|.++++|++|||.+|.|..+.|++|+.+ .|+.|-+..-.+-|.| ..|+.+
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHH
Confidence 777777777777777777777777777777776 7777776666666655 334433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8e-41 Score=336.42 Aligned_cols=394 Identities=23% Similarity=0.224 Sum_probs=342.7
Q ss_pred CCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcccccCcCCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEE
Q 004640 210 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 289 (740)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L 289 (740)
+..+.|++++|.+...-+ .+|.++++|+++++.+|.++. +|.......+++.|+|.+|.|+ .+.......++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~-~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDF-EFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcH-HHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccc-cccHHHHHhHhhhhhh
Confidence 356789999999985444 445899999999999999885 4444444566999999999998 7776666668999999
Q ss_pred EccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCC
Q 004640 290 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 369 (740)
Q Consensus 290 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~ 369 (740)
||+.|.|+.+...+|..-.++++|+|++|+|+ .+..+.|.++.+|.+|.|+.|+++. ..+..|..+++
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNritt-----------Lp~r~Fk~L~~ 222 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITT-----------LPQRSFKRLPK 222 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccc-----------cCHHHhhhcch
Confidence 99999999877778888889999999999998 8999999999999999988888775 66778999999
Q ss_pred CCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcC-CCCcceEEccCcccccccccccCCccCcCcCChhh
Q 004640 370 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI 448 (740)
Q Consensus 370 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~ 448 (740)
|+.|+|..|+|...-.-+|+++++|+.|.+..|.+.....++|. +.++++|+++.|++.. .-.+|+
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------------vn~g~l 289 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------------VNEGWL 289 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-------------hhcccc
Confidence 99999999999966677899999999999999999999999887 8999999777776653 555788
Q ss_pred hhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcccccccccccCCCccc
Q 004640 449 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF 528 (740)
Q Consensus 449 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (740)
.++++|+.|++++|.|..+.++++...++|++|+|++|+|+...+..|..++
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~---------------------------- 341 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS---------------------------- 341 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999988787776644
Q ss_pred ccccchheehhhhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCc---cccCCCCCCEEeccCcccCc
Q 004640 529 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPS---TFSNLKHIESLDLSYNKLNG 605 (740)
Q Consensus 529 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~i~~ 605 (740)
.|++|+|++|.+..+...+|.++++|++|||++|.++..+.+ .|.++++|+.|++.+|+|..
T Consensus 342 ---------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 342 ---------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred ---------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 899999999999988888999999999999999999887654 58889999999999999998
Q ss_pred cCCccccCCCCCCEEecCCCccccccCcccccccccCcccccCCCCCCCCCC-----------------CCCCCCCCCCC
Q 004640 606 KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL-----------------PICRSPATMSE 668 (740)
Q Consensus 606 ~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~-----------------~~c~~~~~~~~ 668 (740)
+...+|..+..|+.|||.+|+|...-+..|..+ .++.+.+..-.++|+|.+ ..|..|+.+.+
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad 485 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLAD 485 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccccc
Confidence 888999999999999999999999888888777 777777788889999963 17999998887
Q ss_pred ccCCCCC
Q 004640 669 ASIGNER 675 (740)
Q Consensus 669 ~~~~~~~ 675 (740)
..+...+
T Consensus 486 ~~i~svd 492 (873)
T KOG4194|consen 486 QSIVSVD 492 (873)
T ss_pred ceeEeec
Confidence 7544443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-39 Score=313.63 Aligned_cols=484 Identities=26% Similarity=0.369 Sum_probs=295.0
Q ss_pred CCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc-cCCCCCCCEEEcCCCcccccCcccccCCCCCCEEE
Q 004640 20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELY 98 (740)
Q Consensus 20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 98 (740)
-..++.|++++|.+. .+. ....++..|.+|++++|+++.+++ ++.+..++.|+.++|++. ..|..+..+.+|+.++
T Consensus 44 qv~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hcchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 356777888888877 555 567778888888888888887777 777788888888888887 4566777788888888
Q ss_pred CCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCCCCCcEEEccCCCCcCcCChhhhccCCCCcEEEccCCcccccccccc
Q 004640 99 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESH 178 (740)
Q Consensus 99 L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 178 (740)
.++|.+. .++. .++.+..|+.++..+|+++.. + ..+..+.++..+++.+|++..
T Consensus 121 ~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~sl-----------------p-~~~~~~~~l~~l~~~~n~l~~------ 174 (565)
T KOG0472|consen 121 CSSNELK-ELPD-SIGRLLDLEDLDATNNQISSL-----------------P-EDMVNLSKLSKLDLEGNKLKA------ 174 (565)
T ss_pred cccccee-ecCc-hHHHHhhhhhhhccccccccC-----------------c-hHHHHHHHHHHhhccccchhh------
Confidence 8888887 6666 677777777777777777644 1 123334444444444443321
Q ss_pred cCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcccccCcCCCCCC
Q 004640 179 SLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSH 258 (740)
Q Consensus 179 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 258 (740)
.|+..-.++.|+++|...|-++ .+|+.+ +.+.+|..|++..|++...+ .|.+|
T Consensus 175 -----------------------l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~lP--ef~gc 227 (565)
T KOG0472|consen 175 -----------------------LPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIRFLP--EFPGC 227 (565)
T ss_pred -----------------------CCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccccCC--CCCcc
Confidence 1222222444455554444443 444444 45555555555555555322 55555
Q ss_pred CCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEE
Q 004640 259 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL 338 (740)
Q Consensus 259 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 338 (740)
..|+++.++.|+|. .+|......++++..||++.|+++ ..|+.+.-+.+|++||+|+|.++ .+|.... ++ .|+.|
T Consensus 228 s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg-nl-hL~~L 302 (565)
T KOG0472|consen 228 SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG-NL-HLKFL 302 (565)
T ss_pred HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc-cc-eeeeh
Confidence 55555555555555 555555555555555566555555 44555555555555566655555 4554443 33 55555
Q ss_pred EccCCcccceeeecCCcCCCCCCccccCcCC-CCeEECcCC---c-ccc----CCcccccccCCCCEEEccCCcCcccCC
Q 004640 339 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW-LIHIIMPEN---H-LEG----PIPVEFCQLYSLQILDISDNNISGSLP 409 (740)
Q Consensus 339 ~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n---~-i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~ 409 (740)
-+.+|++... ..--+++-....+..+.+ .+.=.++.. . -.. ..-.......+.+.|++++-+++.++.
T Consensus 303 ~leGNPlrTi---Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd 379 (565)
T KOG0472|consen 303 ALEGNPLRTI---RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD 379 (565)
T ss_pred hhcCCchHHH---HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH
Confidence 5555555421 000000000000000000 000000000 0 000 011122334567778888888877777
Q ss_pred CCcCCC---CcceEEccCcccccccccccCCccCcCcCChhhhhcCCCCE-EEccCCeeeecCCccccCCCCCCEEEccC
Q 004640 410 SCFHPL---SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSH-LILGHNNLEGEVPVQLCELNQLQLLDLSN 485 (740)
Q Consensus 410 ~~~~~~---~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 485 (740)
..|... -....++++|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++
T Consensus 380 EVfea~~~~~Vt~VnfskNqL~--------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~N 444 (565)
T KOG0472|consen 380 EVFEAAKSEIVTSVNFSKNQLC--------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSN 444 (565)
T ss_pred HHHHHhhhcceEEEecccchHh--------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeeccc
Confidence 777632 2667777777665 45655555555544 455555555 6677788888888888888
Q ss_pred CcccccCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCCcccccC
Q 004640 486 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN 565 (740)
Q Consensus 486 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 565 (740)
|.+. .+|..++.+. .|+.|+++.|++. ..|..+..
T Consensus 445 N~Ln-~LP~e~~~lv-------------------------------------------~Lq~LnlS~NrFr-~lP~~~y~ 479 (565)
T KOG0472|consen 445 NLLN-DLPEEMGSLV-------------------------------------------RLQTLNLSFNRFR-MLPECLYE 479 (565)
T ss_pred chhh-hcchhhhhhh-------------------------------------------hhheecccccccc-cchHHHhh
Confidence 8775 5555554433 5888888888877 56777777
Q ss_pred cccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCCccc
Q 004640 566 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 628 (740)
Q Consensus 566 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l~ 628 (740)
+..++.+-.++|++....++.+.++.+|..||+.+|.+. .+|..+.++++|++|++.|||+.
T Consensus 480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 777777777778888888888888888888888888888 66777888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-38 Score=303.57 Aligned_cols=493 Identities=23% Similarity=0.295 Sum_probs=307.3
Q ss_pred hhcCCCCCCCEEECCCCcCCcccc-cCCCCCCCEEEcCCCcccccCcccccCCCCCCEEECCCCCCCCcCCccccCCCCC
Q 004640 40 KEFDSLRDLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNN 118 (740)
Q Consensus 40 ~~f~~l~~L~~L~Ls~n~i~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 118 (740)
...+.-..|+.|.+++|.++.+.+ +..+..|..|++++|++.. .|.+++.+.+++.++.++|++. .+|. .+..+..
T Consensus 39 e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~ 115 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLIS 115 (565)
T ss_pred hhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhh
Confidence 445566777888888888777666 7777888888888888774 4556777777888888888877 7776 6777777
Q ss_pred CCEEEcCCCCCCCCCCCcEEEccCCCCcCcCChhhhccCCCCcEEEccCCcccccccccccCcCCCccccEEEecCCCCC
Q 004640 119 LEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGD 198 (740)
Q Consensus 119 L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 198 (740)
|.+++.++|.+.++
T Consensus 116 l~~l~~s~n~~~el------------------------------------------------------------------ 129 (565)
T KOG0472|consen 116 LVKLDCSSNELKEL------------------------------------------------------------------ 129 (565)
T ss_pred hhhhhccccceeec------------------------------------------------------------------
Confidence 77777776655432
Q ss_pred CCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcccccCcCCCCCCCCcCEEEcccCcCcccCChh
Q 004640 199 GVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVE 278 (740)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 278 (740)
|..++.+.+++.++..+|.+. ..|..+ ..+.++..+++.+|++....+..+. ++.|+++|...|.+. .+|..
T Consensus 130 ----~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~ 201 (565)
T KOG0472|consen 130 ----PDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPE 201 (565)
T ss_pred ----CchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChh
Confidence 222333344445555555554 344443 3555666666666666655544444 666666666666665 66666
Q ss_pred hhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCC
Q 004640 279 IGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 358 (740)
Q Consensus 279 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~ 358 (740)
++. +.+|+.|+++.|+|. ..| .|.++..|+++.++.|.+. .+|....++++++.+||+..|++++
T Consensus 202 lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke----------- 266 (565)
T KOG0472|consen 202 LGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE----------- 266 (565)
T ss_pred hcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-----------
Confidence 655 666677777777766 444 5666777777777777766 6666666667777777766666664
Q ss_pred CCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCC---CcceEEc--cCccccccccc
Q 004640 359 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL---SIEQVHL--SKNMLHRQLKR 433 (740)
Q Consensus 359 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~L~~L~l--~~n~l~~~~~~ 433 (740)
.|..+.-+.+|+.||+++|.|+ ..|.+++++ .|+.|-+.||++..+-.+..... -|++|.= ..-.++..-..
T Consensus 267 -~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 267 -VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred -CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 5666666666666666666666 345566666 66666666666643322222100 0111100 00000000000
Q ss_pred ccCC-ccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCC--CCCEEEccCCcccccCCCCcccccccccccCCCC
Q 004640 434 DLSY-NLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN--QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSS 510 (740)
Q Consensus 434 ~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~ 510 (740)
.-+. ....+..| .....-+.+.|++++-+++..+.+.|..-. -...+++++|++. .+|..+..+.-...
T Consensus 344 ~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT------ 415 (565)
T KOG0472|consen 344 TETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT------ 415 (565)
T ss_pred ccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH------
Confidence 0000 00001111 122344566677777776644444444322 2566677777765 44443332220000
Q ss_pred CcccccccccccCCCcccccccchheeh-hhhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccC
Q 004640 511 LDEKFEISFFIEGPQGDFTTKNIAYIYQ-GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSN 589 (740)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 589 (740)
......+.+.+++. ...+++|..|+|++|.+. .+|..++.+..|+.||+|+|++. ..|.....
T Consensus 416 --------------~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~ 479 (565)
T KOG0472|consen 416 --------------DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE 479 (565)
T ss_pred --------------HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh
Confidence 00000111111111 134678999999999988 67889999999999999999999 66788888
Q ss_pred CCCCCEEeccCcccCccCCccccCCCCCCEEecCCCccccccCcccccccccCcccccCCCCC
Q 004640 590 LKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFL 652 (740)
Q Consensus 590 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~ 652 (740)
+..++.+-.++|++..+.|+.+..+.+|.+||+.+|.+....|. +..+.++..+.+.|||+-
T Consensus 480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence 88899999999999988888899999999999999999975444 789999999999999986
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=314.06 Aligned_cols=506 Identities=25% Similarity=0.273 Sum_probs=305.7
Q ss_pred CeecCCCCCCcccchhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc-cCCCCCCCEEEcCCCc
Q 004640 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIK 79 (740)
Q Consensus 1 ~LdLs~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~l~~L~~L~Ls~n~ 79 (740)
++|.|.++++-|....+.+ ..++.|+++.|.+- ..|-...++..+|+.||+++|.+..++. +..+++|+.|+++.|.
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-EALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCcccchhhccH-HHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence 5788888888765554444 45999999999887 6665667788889999999999999887 8889999999999999
Q ss_pred ccccCcccccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCCCCCcEEEccCCCCcCcCChhhhccCCC
Q 004640 80 LNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSR 159 (740)
Q Consensus 80 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 159 (740)
|.. .|....++.+|+.+.|.+|.+. .+|. .+..+++|++|++++|.+...+ ..+..+..
T Consensus 80 i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~~P------------------l~i~~lt~ 138 (1081)
T KOG0618|consen 80 IRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGPIP------------------LVIEVLTA 138 (1081)
T ss_pred Hhh-Cchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccCCCc------------------hhHHhhhH
Confidence 985 4577788999999999999888 8887 8899999999999999876541 11223333
Q ss_pred CcEEEccCCcccccccccccCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCE
Q 004640 160 LKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLAT 239 (740)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 239 (740)
+..+..++|.... ..+...++.+++ ..+.+.+.++..+..++. .++++.|.+. ... ..++.+|+.
T Consensus 139 ~~~~~~s~N~~~~--------~lg~~~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~ 203 (1081)
T KOG0618|consen 139 EEELAASNNEKIQ--------RLGQTSIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEV 203 (1081)
T ss_pred HHHHhhhcchhhh--------hhccccchhhhh-hhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhh
Confidence 4444444441000 011112444444 444444444444444444 5777777665 111 135566666
Q ss_pred EEcCCCcccccCcCCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCc
Q 004640 240 LFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ 319 (740)
Q Consensus 240 L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 319 (740)
+....|.+....- .-++++.|+.++|.++ .+..... ..+|+++++++|++. ..|.++..+.+|+.++..+|.
T Consensus 204 l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~-~~~~~p~--p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 204 LHCERNQLSELEI----SGPSLTALYADHNPLT-TLDVHPV--PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhhhhcccceEEe----cCcchheeeeccCcce-eeccccc--cccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 6666665543221 1256666677777665 3322221 246677777777766 344666667777777777777
Q ss_pred CCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCC-CCEEE
Q 004640 320 LTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS-LQILD 398 (740)
Q Consensus 320 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~ 398 (740)
++ .+|..++ ...+|+.|++..|++.. +|+...++.+|++|+|..|++....+..|.-... |+.|.
T Consensus 276 l~-~lp~ri~-~~~~L~~l~~~~nel~y------------ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 276 LV-ALPLRIS-RITSLVSLSAAYNELEY------------IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred HH-hhHHHHh-hhhhHHHHHhhhhhhhh------------CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 76 6666665 46666766666666653 5566666677777777777766444333333332 56666
Q ss_pred ccCCcCcccCCCC-cCCCCcceEEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCC
Q 004640 399 ISDNNISGSLPSC-FHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQ 477 (740)
Q Consensus 399 l~~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 477 (740)
.+.|++...+... .....|++|++.+|.++. ..-..+.+..+|+.|+|++|++...+...+.++..
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-------------~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTD-------------SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccc-------------cchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 6666655333111 113445555555554433 33334555666666666666666555555666666
Q ss_pred CCEEEccCCcccccCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCC
Q 004640 478 LQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG 557 (740)
Q Consensus 478 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 557 (740)
|+.|+||+|.++ .+|.+..++. .|++|..-+|++.
T Consensus 409 LeeL~LSGNkL~-~Lp~tva~~~-------------------------------------------~L~tL~ahsN~l~- 443 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPDTVANLG-------------------------------------------RLHTLRAHSNQLL- 443 (1081)
T ss_pred hHHHhcccchhh-hhhHHHHhhh-------------------------------------------hhHHHhhcCCcee-
Confidence 666666666665 3334333322 5666666666665
Q ss_pred CCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCC
Q 004640 558 HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 625 (740)
Q Consensus 558 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N 625 (740)
..| .+..++.|+.+|+|.|+++...-..-...++|++||+++|.-.......|..++++..+++.-|
T Consensus 444 ~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 334 5566666666666666665432222122256666666666543344455555555555555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-33 Score=300.52 Aligned_cols=434 Identities=25% Similarity=0.321 Sum_probs=331.1
Q ss_pred eecCCCCCCcccchhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc-cCCCCCCCEEEcCCCcc
Q 004640 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIKL 80 (740)
Q Consensus 2 LdLs~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~l~~L~~L~Ls~n~l 80 (740)
|++..|.+-...-++..+.-+|+.||+++|.+. ..| ..+..+.+|+.|+++.|.|...+. ...+.+|++|.|.+|.+
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh
Confidence 566677655444456666777999999999998 788 788999999999999999999887 78999999999999888
Q ss_pred cccCcccccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCC-CCCCC--CCCcEEEccCCCCcCcCChhhhccC
Q 004640 81 NHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYN-KIDNL--VVPQELRLSDNHFRIPISLEPLFNH 157 (740)
Q Consensus 81 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~--~~L~~L~l~~n~~~~~~~~~~~~~~ 157 (740)
. ..|..+..+.+|+.|+++.|.+. .+|. .+..+..++.+..++| +++.+ ..++.+++..|.+.+.+... ...+
T Consensus 104 ~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l 179 (1081)
T KOG0618|consen 104 Q-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNL 179 (1081)
T ss_pred h-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhh
Confidence 7 56888999999999999999998 8887 8888999999999999 33322 45788888888876554322 2333
Q ss_pred CCCcEEEccCCcccccccccccCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCC
Q 004640 158 SRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL 237 (740)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 237 (740)
.+ .+++++|.+........ .+++.+.. ..+.+. ..--.-++++.|+.++|.+....+. ....++
T Consensus 180 ~~--~ldLr~N~~~~~dls~~------~~l~~l~c-~rn~ls----~l~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl 243 (1081)
T KOG0618|consen 180 TH--QLDLRYNEMEVLDLSNL------ANLEVLHC-ERNQLS----ELEISGPSLTALYADHNPLTTLDVH---PVPLNL 243 (1081)
T ss_pred he--eeecccchhhhhhhhhc------cchhhhhh-hhcccc----eEEecCcchheeeeccCcceeeccc---cccccc
Confidence 33 58888888762211111 12333332 111111 1111346788889999888733322 245789
Q ss_pred CEEEcCCCcccccCcCCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEccc
Q 004640 238 ATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSN 317 (740)
Q Consensus 238 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 317 (740)
+.++++.|++++.. ..+..+.+|+.++..+|.++ .+|..++. .++|+.|.+.+|.+. -+|....+++.|++|+|..
T Consensus 244 ~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred eeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 99999999999866 88999999999999999998 89988876 789999999999999 4566677899999999999
Q ss_pred CcCCCCCchhhhhCCCC-CcEEEccCCcccceeeecCCcCCCCCCc-cccCcCCCCeEECcCCccccCCcccccccCCCC
Q 004640 318 NQLTGEIPEHLAVGCVN-LQFLMLSNNSLKEGLYLTNNSLSGNIPG-WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQ 395 (740)
Q Consensus 318 n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 395 (740)
|++. .+|+..+.-+.. |+.|+.+.|++.. .|. .=.....|+.|++.+|.++...-..+.+..+|+
T Consensus 320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~------------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLST------------LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred cccc-ccchHHHhhhhHHHHHHhhhhccccc------------cccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 9998 899988766655 7888888777663 221 112357788999999999888777888889999
Q ss_pred EEEccCCcCcccCCCCcC-CCCcceEEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccC
Q 004640 396 ILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE 474 (740)
Q Consensus 396 ~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 474 (740)
.|+|++|++...+...+. ...|++|++|+|+++ .+|..+..+..|++|...+|++. ..| .+..
T Consensus 387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--------------~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--------------TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred eeeecccccccCCHHHHhchHHhHHHhcccchhh--------------hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 999999988866665555 667778877777766 56677888888888888888887 455 5778
Q ss_pred CCCCCEEEccCCcccc
Q 004640 475 LNQLQLLDLSNNSLHG 490 (740)
Q Consensus 475 l~~L~~L~Ls~n~l~~ 490 (740)
++.|+.+|+|.|+++.
T Consensus 451 l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cCcceEEecccchhhh
Confidence 8888888888888763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-32 Score=278.59 Aligned_cols=359 Identities=26% Similarity=0.396 Sum_probs=267.6
Q ss_pred EEEecCCCCCC-CccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcccccCcCCCCCCCCcCEEEcc
Q 004640 189 SLSLSSSYGDG-VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDIS 267 (740)
Q Consensus 189 ~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls 267 (740)
-.++ +++.+. +.+|.....++.++.|.+....+. .+|..+ +.+.+|++|.+.+|++.. +...++.++.|+.+++.
T Consensus 11 GvDf-sgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 11 GVDF-SGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVR 86 (1255)
T ss_pred cccc-cCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhh
Confidence 3344 333333 567888888889999998888776 678776 688899999999988875 34567788899999999
Q ss_pred cCcCc-ccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCccc
Q 004640 268 NNNIR-GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK 346 (740)
Q Consensus 268 ~n~l~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 346 (740)
+|++. .-+|.++|. +..|..|||++|+++ ..|..+..-+++-.|+||+|+|. .||..+|.++..|-.||||+|++.
T Consensus 87 ~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 98875 247888887 789999999999998 67888888888999999999998 899999999999999999888887
Q ss_pred ceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCc-ccCCCCcC-CCCcceEEccC
Q 004640 347 EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS-GSLPSCFH-PLSIEQVHLSK 424 (740)
Q Consensus 347 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-~~~L~~L~l~~ 424 (740)
.+|+.+..+..|++|+|++|.+....-..+..+++|+.|.+++.+-+ .-+|..+. +.+|..++++.
T Consensus 164 ------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 164 ------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred ------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 47888888899999999998876544444555667788888877654 22333333 56666776666
Q ss_pred cccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCccccccccc
Q 004640 425 NMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYES 504 (740)
Q Consensus 425 n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 504 (740)
|.+. ..|+.+.++.+|+.|+|++|+|+... .......+|++|+||+|+++ ..|.++..+
T Consensus 232 N~Lp--------------~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~avcKL----- 290 (1255)
T KOG0444|consen 232 NNLP--------------IVPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDAVCKL----- 290 (1255)
T ss_pred cCCC--------------cchHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHHHhhh-----
Confidence 6554 66777777777778888887777432 23445567777777777776 555555443
Q ss_pred ccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCC-CCcccccCcccCceEecCCcccCccC
Q 004640 505 YNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIPPQIGNLTRIQTLNLSYNNLTGLI 583 (740)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~ 583 (740)
+.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. +.
T Consensus 291 --------------------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lV 331 (1255)
T KOG0444|consen 291 --------------------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LV 331 (1255)
T ss_pred --------------------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cC
Confidence 367777777777653 35677777777777777777777 66
Q ss_pred CccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCCcc
Q 004640 584 PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 627 (740)
Q Consensus 584 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l 627 (740)
|+++..+..|+.|.|+.|++. ..|+++.-++.|+.||+..||=
T Consensus 332 PEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred chhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 777777778888888888777 6777777777788888877753
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=9.2e-32 Score=273.00 Aligned_cols=346 Identities=27% Similarity=0.342 Sum_probs=280.0
Q ss_pred ccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcccc-cCcCCCCCCCCcCEEEcccCcCcccCChhh
Q 004640 201 TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG-PFWLPIHSHKRLGILDISNNNIRGHIPVEI 279 (740)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 279 (740)
.+|+.++.+.+|+.|.+++|++...... + ..++.|+.+.+..|.+.. -+|..+..+..|++||+|+|+++ +.|..+
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGE-L-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L 122 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGE-L-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL 122 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhh-h-ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh
Confidence 4788899999999999999988743332 2 578899999999998865 45667778999999999999998 899887
Q ss_pred hhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCC
Q 004640 280 GDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN 359 (740)
Q Consensus 280 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~ 359 (740)
.. -.++-.|+|++|+|..+....|.+++.|-.||||+|++. .+|+.+- .+..|++|+|++|++.- .
T Consensus 123 E~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R-RL~~LqtL~Ls~NPL~h-----------f 188 (1255)
T KOG0444|consen 123 EY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR-RLSMLQTLKLSNNPLNH-----------F 188 (1255)
T ss_pred hh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHH-HHhhhhhhhcCCChhhH-----------H
Confidence 65 568999999999999777778889999999999999998 8998875 68999999999998652 1
Q ss_pred CCccccCcCCCCeEECcCCccc-cCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcceEEccCcccccccccccCCc
Q 004640 360 IPGWLGNLTWLIHIIMPENHLE-GPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYN 438 (740)
Q Consensus 360 ~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n 438 (740)
--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|+|.|.+..++...+...+|+.|++++|.++.
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite--------- 259 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE--------- 259 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee---------
Confidence 1123456778888888887533 347888999999999999999998666555668999999998888773
Q ss_pred cCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccc-cCCCCcccccccccccCCCCCcccccc
Q 004640 439 LLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEI 517 (740)
Q Consensus 439 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (740)
+....+...+|++|+|+.|+++ ..|++++++++|+.|.+.+|+++- -+|..++.+.
T Consensus 260 -----L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~----------------- 316 (1255)
T KOG0444|consen 260 -----LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI----------------- 316 (1255)
T ss_pred -----eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-----------------
Confidence 2334556689999999999999 788999999999999999999862 3555555533
Q ss_pred cccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEe
Q 004640 518 SFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLD 597 (740)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 597 (740)
.|+.+..++|.+. ..|+.+..+..|+.|.|++|++- ..|+++.-++.|+.||
T Consensus 317 --------------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 317 --------------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLD 368 (1255)
T ss_pred --------------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceee
Confidence 7899999999988 88999999999999999999998 4588999999999999
Q ss_pred ccCcccCccCCccccCCCCCCEEecC
Q 004640 598 LSYNKLNGKIPHQLVELKTLEVFSVA 623 (740)
Q Consensus 598 Ls~N~i~~~~~~~~~~l~~L~~l~l~ 623 (740)
+..|.-...+|.--..-++++.-++.
T Consensus 369 lreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 369 LRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCCcCccCCCCcchhhhcceeeecc
Confidence 99998775665433333455554443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-27 Score=230.17 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=96.6
Q ss_pred hhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCE
Q 004640 540 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 619 (740)
Q Consensus 540 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 619 (740)
+.+++|+.|+|++|+++++.+.+|.+...+++|.|..|+|..+...+|.++..|+.|+|.+|+|+...|.+|..+.+|.+
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 34679999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EecCCCcccccc-CcccccccccCcccccCCCC
Q 004640 620 FSVAYNNLSGEI-LEWTAQFATFNKSSYEGNTF 651 (740)
Q Consensus 620 l~l~~N~l~~~~-~~~~~~~~~~~~~~~~~n~~ 651 (740)
+++-.||+.|.| ..|+..|..-.. ..+||-
T Consensus 351 l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~~ 381 (498)
T KOG4237|consen 351 LNLLSNPFNCNCRLAWLGEWLRKKS--VVGNPR 381 (498)
T ss_pred eehccCcccCccchHHHHHHHhhCC--CCCCCC
Confidence 999999999988 566666544333 456653
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-26 Score=223.72 Aligned_cols=375 Identities=21% Similarity=0.229 Sum_probs=215.8
Q ss_pred CCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc--cCCCCCCCEEEcCC-CcccccCcccccCCCCCCEEE
Q 004640 22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSG-IKLNHSILSSLTVFSSLRELY 98 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~--~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 98 (740)
.-+.++|..|.|+ .||+++|..+++|+.||||+|.|+.+.+ |.++++|..|-+.+ |+|+.....+|+++..|+.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3444555555555 5555555555555555555555555554 55555555544433 555555555555555555555
Q ss_pred CCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCC--------CCCcEEEccCCCCcCcCChhhhccCCCCcEE--EccCC
Q 004640 99 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIF--HAKNN 168 (740)
Q Consensus 99 L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L--~l~~~ 168 (740)
+.-|++. .++.+.|..+++|..|.+..|.++.+ ..++.+++..|.+... .+|+.+ ++..+
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---------CnL~wla~~~a~~ 216 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---------CNLPWLADDLAMN 216 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---------cccchhhhHHhhc
Confidence 5555555 44444555555555555555544332 3334444444432211 111111 00000
Q ss_pred cccccccc-cccCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcc
Q 004640 169 QMNAEITE-SHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL 247 (740)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 247 (740)
.+...... ..+......++..++- .+.......+..--.+.+...+..|..-|+.+++|++|++++|++
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a----------~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDA----------RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred hhhcccceecchHHHHHHHhcccch----------hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 00000000 0000000001111110 001111112211122344455677887789999999999999999
Q ss_pred cccCcCCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCC-----
Q 004640 248 AGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG----- 322 (740)
Q Consensus 248 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----- 322 (740)
+.+...+|.+...+++|.+..|++. .+....|..+..|++|+|.+|+|+...|.+|..+..|.+|+|-.|.+.-
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 9999999999999999999999998 8888899999999999999999999999999999999999998886541
Q ss_pred CCchhh----------hhCCCCCcEEEccCCcccce--------------------------eeecCCcCCCCCCccccC
Q 004640 323 EIPEHL----------AVGCVNLQFLMLSNNSLKEG--------------------------LYLTNNSLSGNIPGWLGN 366 (740)
Q Consensus 323 ~~~~~~----------~~~l~~L~~L~l~~n~l~~~--------------------------l~l~~n~~~~~~~~~~~~ 366 (740)
.+-+++ ...-..++.+.++...+.+. +.-|+..+. .+|..+
T Consensus 366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i-- 442 (498)
T KOG4237|consen 366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI-- 442 (498)
T ss_pred HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--
Confidence 000000 01122456666666655421 111222221 122111
Q ss_pred cCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcC-CCCcceEEccCc
Q 004640 367 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKN 425 (740)
Q Consensus 367 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n 425 (740)
-..-.+|++++|.++. +|.. .+.+| .+|+++|++.......|. +..+.++-++.|
T Consensus 443 P~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 443 PVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 1234678899999884 4444 56677 899999999977777776 777888876654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.1e-20 Score=226.09 Aligned_cols=111 Identities=26% Similarity=0.398 Sum_probs=54.6
Q ss_pred CCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcceEEccCcccccccccccCCcc
Q 004640 360 IPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNL 439 (740)
Q Consensus 360 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~ 439 (740)
+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|.. ..+|++|++++|.+.
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~----------- 859 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE----------- 859 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-----------
Confidence 34444444555555554443222333333 3455555555554433222221 234555544444433
Q ss_pred CcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCc
Q 004640 440 LNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS 487 (740)
Q Consensus 440 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 487 (740)
.+|.++..+++|+.|++++|+--..+|.....+++|+.+++++|.
T Consensus 860 ---~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 860 ---EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 345556666666666666643222344455566666666666664
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.4e-21 Score=226.56 Aligned_cols=131 Identities=23% Similarity=0.267 Sum_probs=100.9
Q ss_pred hhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcccccccccccCCCcc
Q 004640 448 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD 527 (740)
Q Consensus 448 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (740)
+...++|+.|++++|......|..+.++++|+.|++++|...+.+|... .
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------- 823 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------- 823 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------------
Confidence 3345788889998887766778888888999999998876444444332 1
Q ss_pred cccccchheehhhhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccC
Q 004640 528 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 607 (740)
Q Consensus 528 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 607 (740)
+++|+.|+|++|......|.. .++|++|+|++|.++. .|..+..+++|+.|++++|.-...+
T Consensus 824 --------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 824 --------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred --------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCcc
Confidence 448999999998655455543 4689999999999984 5778899999999999996544467
Q ss_pred CccccCCCCCCEEecCCCc
Q 004640 608 PHQLVELKTLEVFSVAYNN 626 (740)
Q Consensus 608 ~~~~~~l~~L~~l~l~~N~ 626 (740)
|.....+++|+.+++++++
T Consensus 886 ~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CcccccccCCCeeecCCCc
Confidence 7778889999999999884
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4e-21 Score=212.48 Aligned_cols=263 Identities=27% Similarity=0.331 Sum_probs=159.2
Q ss_pred cCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEc
Q 004640 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 340 (740)
Q Consensus 261 L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 340 (740)
-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|. ..++|+.|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeec
Confidence 345566666665 5555443 256666666666653 332 1355666666666666 5553 1345666666
Q ss_pred cCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcceE
Q 004640 341 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 420 (740)
Q Consensus 341 ~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 420 (740)
++|.+.. +|.. ..+|+.|++++|.++.. |. ..++|+.|++++|++++++. .+..|+.|
T Consensus 270 s~N~L~~------------Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L 327 (788)
T PRK15387 270 FSNPLTH------------LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---LPSELCKL 327 (788)
T ss_pred cCCchhh------------hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---Cccccccc
Confidence 5555442 2221 23455666666666532 32 23566677777776665432 12345666
Q ss_pred EccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCccccc
Q 004640 421 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT 500 (740)
Q Consensus 421 ~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 500 (740)
++++|.+.. +|.. ..+|+.|++++|++++. |.. .++|+.|++++|++++ +|..
T Consensus 328 ~Ls~N~L~~--------------LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l----- 380 (788)
T PRK15387 328 WAYNNQLTS--------------LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL----- 380 (788)
T ss_pred ccccCcccc--------------cccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc-----
Confidence 555555432 2211 14678888888888743 322 3567778888888763 3321
Q ss_pred ccccccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccC
Q 004640 501 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 580 (740)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 580 (740)
+.+|+.|++++|++++ +|.. .++|+.|++++|+++
T Consensus 381 -----------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 381 -----------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT 415 (788)
T ss_pred -----------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC
Confidence 1257888888888875 4432 357888888888888
Q ss_pred ccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCCccccccCccc
Q 004640 581 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWT 635 (740)
Q Consensus 581 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~ 635 (740)
++ |.. ..+|+.|++++|+|+ .+|+.+..+++|+.|++++|+|++..+..+
T Consensus 416 sI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 416 SL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 64 433 246778888888888 677788888888888888888887665543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.8e-20 Score=205.83 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=40.9
Q ss_pred cCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccc
Q 004640 544 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 611 (740)
Q Consensus 544 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~ 611 (740)
+|+.|++++|++++ +|.. ..+|+.|++++|+++. +|..+.++++|+.|++++|++++..+..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 56677777777764 3432 2356667777777773 45667777777777777777776655554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.9e-19 Score=196.90 Aligned_cols=180 Identities=27% Similarity=0.372 Sum_probs=87.9
Q ss_pred cCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEc
Q 004640 261 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 340 (740)
Q Consensus 261 L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 340 (740)
.+.|+++++.++ .+|..+. +.++.|++++|+++. +|..+. ++|++|++++|+++ .+|..+. ++|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 445566665555 5554432 356666666666653 333332 35666666666665 5555432 24556655
Q ss_pred cCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcceE
Q 004640 341 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 420 (740)
Q Consensus 341 ~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 420 (740)
++|.+.+ +|..+. .+|+.|++++|.+.. +|..+. ++|+.|++++|++++.+... +.+|+.|
T Consensus 249 s~N~L~~------------LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L 309 (754)
T PRK15370 249 SINRITE------------LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHL 309 (754)
T ss_pred cCCccCc------------CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccc--hhhHHHH
Confidence 5555442 333322 355666666666553 343332 35666666666666432211 1234444
Q ss_pred EccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCccc
Q 004640 421 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 489 (740)
Q Consensus 421 ~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (740)
++++|.+.. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++
T Consensus 310 ~Ls~N~Lt~--------------LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 310 NVQSNSLTA--------------LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred HhcCCcccc--------------CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 444443321 11111 1355556666665553 232221 45555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.8e-18 Score=193.13 Aligned_cols=225 Identities=23% Similarity=0.377 Sum_probs=111.5
Q ss_pred CcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEE
Q 004640 260 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 339 (740)
Q Consensus 260 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 339 (740)
.++.|++++|.++ .+|..++ ++|++|++++|+++. +|..+. ++|+.|++++|.+. .+|..+. .+|+.|+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLD 268 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEE
Confidence 4445555555554 4444332 245555555555542 233221 24555555555554 4444432 2445555
Q ss_pred ccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcce
Q 004640 340 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 419 (740)
Q Consensus 340 l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 419 (740)
+++|++.. +|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|+++..+... +++|+.
T Consensus 269 Ls~N~L~~------------LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~ 329 (754)
T PRK15370 269 LFHNKISC------------LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL--PPGLKT 329 (754)
T ss_pred CcCCccCc------------cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc--ccccee
Confidence 44444332 222221 245555555555543 222221 24555555555555432211 235555
Q ss_pred EEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCcccc
Q 004640 420 VHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT 499 (740)
Q Consensus 420 L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 499 (740)
|++++|.+++ +|..+ .++|+.|++++|+++. +|..+ .++|+.|++++|+++. +|..+
T Consensus 330 L~Ls~N~Lt~--------------LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP~~l--- 386 (754)
T PRK15370 330 LEAGENALTS--------------LPASL--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LPENL--- 386 (754)
T ss_pred ccccCCcccc--------------CChhh--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CCHhH---
Confidence 5555554432 22222 2567777777777763 34333 2567777777777763 33222
Q ss_pred cccccccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCCccc----ccCcccCceEecC
Q 004640 500 TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ----IGNLTRIQTLNLS 575 (740)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls 575 (740)
...|+.|++++|+++. +|.. +..++.+..|++.
T Consensus 387 ------------------------------------------~~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 387 ------------------------------------------PAALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred ------------------------------------------HHHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEee
Confidence 1246677777777763 3333 3344667777777
Q ss_pred CcccC
Q 004640 576 YNNLT 580 (740)
Q Consensus 576 ~N~l~ 580 (740)
+|+++
T Consensus 424 ~Npls 428 (754)
T PRK15370 424 YNPFS 428 (754)
T ss_pred CCCcc
Confidence 77776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=7.9e-19 Score=182.88 Aligned_cols=84 Identities=25% Similarity=0.291 Sum_probs=41.7
Q ss_pred cCcEEEccCCcCCCCCccccc-----CcccCceEecCCcccCcc----CCccccCCCCCCEEeccCcccCcc----CCcc
Q 004640 544 LLSGLYLSCNKLIGHIPPQIG-----NLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKLNGK----IPHQ 610 (740)
Q Consensus 544 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~ 610 (740)
+|+.|++++|.+++.....+. ..+.|++|++++|.++.. ....+..+++|+.+++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 455555555554432111111 235666666666666521 123344456666666666666633 2223
Q ss_pred ccCC-CCCCEEecCCCcc
Q 004640 611 LVEL-KTLEVFSVAYNNL 627 (740)
Q Consensus 611 ~~~l-~~L~~l~l~~N~l 627 (740)
+... +.|+++++.+|+|
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 3333 4566666666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=6.7e-18 Score=175.91 Aligned_cols=266 Identities=23% Similarity=0.207 Sum_probs=162.6
Q ss_pred EEEccCCCCC-cCCCccCCCCCCCcEEEcccCcCCCC----CchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCc
Q 004640 288 VFNISMNALD-GSIPSSFGNMKFLQLLDLSNNQLTGE----IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 362 (740)
Q Consensus 288 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~ 362 (740)
.|+|..+.++ ......|..+++|+.|+++++.+++. ++.. ....++++.++++++.+.. ........+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~ 75 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGR-----IPRGLQSLLQ 75 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCC-----cchHHHHHHH
Confidence 4667777766 33344556677788888888877521 2222 2345667788777765441 0000011233
Q ss_pred cccCcCCCCeEECcCCccccCCcccccccCC---CCEEEccCCcCcccCCCCcCCCCcceEEccCcccccccccccCCcc
Q 004640 363 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYS---LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNL 439 (740)
Q Consensus 363 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~ 439 (740)
.+..+++|+.|++++|.+....+..+..+.+ |++|++++|++.+....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~----------------------------- 126 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR----------------------------- 126 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH-----------------------------
Confidence 4555666677777666665444444444443 66666666655421000
Q ss_pred CcCcCChhhhhc-CCCCEEEccCCeeee----cCCccccCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccc
Q 004640 440 LNGSIPDWIGEL-SQLSHLILGHNNLEG----EVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK 514 (740)
Q Consensus 440 ~~~~~~~~~~~l-~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (740)
.+...+..+ ++|+.|++++|.+++ ..+..+..+++|++|++++|.+++.....+..
T Consensus 127 ---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------- 187 (319)
T cd00116 127 ---LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE---------------- 187 (319)
T ss_pred ---HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH----------------
Confidence 122334455 778888888888773 22344666778888888888776311100000
Q ss_pred ccccccccCCCcccccccchheehhhhcccCcEEEccCCcCCCCC----cccccCcccCceEecCCcccCccCCcccc--
Q 004640 515 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHI----PPQIGNLTRIQTLNLSYNNLTGLIPSTFS-- 588 (740)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 588 (740)
.....++|+.|++++|.+.+.. +..+..+++|++|++++|.+++.....+.
T Consensus 188 -----------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 188 -----------------------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred -----------------------HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 0011237888999888886432 34467789999999999999864333322
Q ss_pred ---CCCCCCEEeccCcccCc----cCCccccCCCCCCEEecCCCccccc
Q 004640 589 ---NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE 630 (740)
Q Consensus 589 ---~l~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~l~l~~N~l~~~ 630 (740)
..+.|++|++++|.++. ...+.+..+++|+.+++++|++...
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 24799999999999972 2334556678999999999999853
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.3e-18 Score=148.10 Aligned_cols=182 Identities=30% Similarity=0.517 Sum_probs=136.4
Q ss_pred cCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcceEEccCcccccccccccCCccCcCcCCh
Q 004640 367 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD 446 (740)
Q Consensus 367 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~ 446 (740)
+...+.|.+++|.++ .+|..+..+.+|+.|++++|++. .+|.
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------------------------~lp~ 73 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------------------------ELPT 73 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------------------------hcCh
Confidence 444555555566555 34445556666666666666665 5566
Q ss_pred hhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccc-cCCCCcccccccccccCCCCCcccccccccccCCC
Q 004640 447 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ 525 (740)
Q Consensus 447 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (740)
.++.++.|+.|+++-|++. +.|..|+.++.|++||+.+|++.. ..|..|..++
T Consensus 74 ~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~------------------------- 127 (264)
T KOG0617|consen 74 SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT------------------------- 127 (264)
T ss_pred hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHH-------------------------
Confidence 6778889999999988888 778889999999999999999875 4566554433
Q ss_pred cccccccchheehhhhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCc
Q 004640 526 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 605 (740)
Q Consensus 526 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 605 (740)
.|+.|+|++|.+. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+++
T Consensus 128 ------------------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 128 ------------------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred ------------------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 7889999999998 78888999999999999999988 45788899999999999999999
Q ss_pred cCCccccCC---CCCCEEecCCCccccccCc
Q 004640 606 KIPHQLVEL---KTLEVFSVAYNNLSGEILE 633 (740)
Q Consensus 606 ~~~~~~~~l---~~L~~l~l~~N~l~~~~~~ 633 (740)
.+|..++.+ .+=+.+.+.+|||...+.+
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 555555543 2334566777888765543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.9e-17 Score=141.36 Aligned_cols=163 Identities=26% Similarity=0.407 Sum_probs=136.9
Q ss_pred cCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccccccc
Q 004640 443 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 522 (740)
Q Consensus 443 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (740)
.+|..+..+.+|+.|++.+|+|+ ..|..++.+++|+.|+++-|++. ..|..|+.+.
T Consensus 47 ~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p---------------------- 102 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP---------------------- 102 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc----------------------
Confidence 56667889999999999999999 66778999999999999999987 7888887744
Q ss_pred CCCcccccccchheehhhhcccCcEEEccCCcCCC-CCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCc
Q 004640 523 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 601 (740)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 601 (740)
.|+.|||.+|++.. ..|..|..++.|+-|+|+.|.+. +.|..++++++|+.|.+.+|
T Consensus 103 ---------------------~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 103 ---------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ---------------------hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 89999999999875 67888999999999999999999 66778999999999999999
Q ss_pred ccCccCCccccCCCCCCEEecCCCccccccCccccccccc---CcccccCCCCCC
Q 004640 602 KLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATF---NKSSYEGNTFLC 653 (740)
Q Consensus 602 ~i~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~---~~~~~~~n~~~c 653 (740)
.+. ..|..+..++.|++|.+.+|+++-..|+ +..+... .....+.|||.-
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 998 7898999999999999999999976665 3333211 123345666643
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=4.4e-13 Score=149.78 Aligned_cols=118 Identities=35% Similarity=0.581 Sum_probs=106.1
Q ss_pred cCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecC
Q 004640 544 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 623 (740)
Q Consensus 544 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~ 623 (740)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCcccccc-cccCcccccCCCCCCCCCCC-CCC
Q 004640 624 YNNLSGEILEWTAQF-ATFNKSSYEGNTFLCGLPLP-ICR 661 (740)
Q Consensus 624 ~N~l~~~~~~~~~~~-~~~~~~~~~~n~~~c~~~~~-~c~ 661 (740)
+|++++.+|..+... .......+.+|+..|++|.. .|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 34456778999999987643 563
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=1.1e-12 Score=119.42 Aligned_cols=124 Identities=27% Similarity=0.429 Sum_probs=44.5
Q ss_pred ecCCCCCCcccchhccCCCCCCEEEcCCCCCCCccChhhcC-CCCCCCEEECCCCcCCcccccCCCCCCCEEEcCCCccc
Q 004640 3 NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD-SLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLN 81 (740)
Q Consensus 3 dLs~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~l~~L~~L~Ls~n~l~ 81 (740)
.|+.+.|..+ ..+.+...+++|+|++|.|+ .|+ .+. .+.+|+.|+|++|.|+.+..+..+++|++|++++|+|+
T Consensus 3 ~lt~~~i~~~--~~~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 3 RLTANMIEQI--AQYNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp --------------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---
T ss_pred cccccccccc--cccccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC
Confidence 3444555442 23456678999999999999 776 354 68899999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCCCC
Q 004640 82 HSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDN 131 (740)
Q Consensus 82 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~ 131 (740)
...+.....+++|++|++++|+|...-....++.+++|+.|++.+|+++.
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 76443335689999999999999843333467788999999999888764
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.4e-12 Score=133.43 Aligned_cols=157 Identities=31% Similarity=0.493 Sum_probs=86.8
Q ss_pred cEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccc
Q 004640 311 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ 390 (740)
Q Consensus 311 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 390 (740)
...|++.|++. ++|..+. .+..|+.+.++.|.+. .+|..+.++..|+.++|+.|++. ..|..++.
T Consensus 78 ~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r------------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~ 142 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR------------TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD 142 (722)
T ss_pred hhhhccccccc-cCchHHH-HHHHHHHHHHHhccce------------ecchhhhhhhHHHHhhhccchhh-cCChhhhc
Confidence 44566666666 6665543 2445555655555554 35666666666666666666666 44555555
Q ss_pred cCCCCEEEccCCcCcccCCCCcCCCCcceEEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCc
Q 004640 391 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV 470 (740)
Q Consensus 391 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 470 (740)
|+ |+.|-+++|+++..+++.-....|..++.+.|.+. .+|..++++.+|+.|.++.|++. ..|.
T Consensus 143 lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~--------------slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 143 LP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ--------------SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred Cc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh--------------hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 54 67777777777644443333344444444433332 45555666666666666666665 3333
Q ss_pred cccCCCCCCEEEccCCcccccCCCCccccc
Q 004640 471 QLCELNQLQLLDLSNNSLHGSIPPCFDNTT 500 (740)
Q Consensus 471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 500 (740)
.++ .-.|..||+|.|+++ .+|-+|..++
T Consensus 207 El~-~LpLi~lDfScNkis-~iPv~fr~m~ 234 (722)
T KOG0532|consen 207 ELC-SLPLIRLDFSCNKIS-YLPVDFRKMR 234 (722)
T ss_pred HHh-CCceeeeecccCcee-ecchhhhhhh
Confidence 444 234556666666654 4455554433
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=8.7e-12 Score=117.59 Aligned_cols=133 Identities=27% Similarity=0.267 Sum_probs=108.6
Q ss_pred hcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcccccccccccCCCcccc
Q 004640 450 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 529 (740)
Q Consensus 450 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (740)
....|+++||++|.|+ .+..+..-.|.++.|++|+|.+..... +
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L--------------------------------- 325 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L--------------------------------- 325 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h---------------------------------
Confidence 3468999999999999 455677888999999999999873221 1
Q ss_pred cccchheehhhhcccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCC-
Q 004640 530 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP- 608 (740)
Q Consensus 530 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~- 608 (740)
..+++|+.||||+|.++.. ..+-..+.+.++|.|+.|.|.++ +++.++-+|..||+++|+|.....
T Consensus 326 ----------a~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 326 ----------AELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred ----------hhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHh
Confidence 2256899999999999854 44556788999999999999877 678899999999999999985433
Q ss_pred ccccCCCCCCEEecCCCcccccc
Q 004640 609 HQLVELKTLEVFSVAYNNLSGEI 631 (740)
Q Consensus 609 ~~~~~l~~L~~l~l~~N~l~~~~ 631 (740)
..+.+++-|+.+.|.+||+.+..
T Consensus 393 ~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccccccHHHHHhhcCCCccccc
Confidence 46788999999999999998744
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=1.5e-10 Score=123.98 Aligned_cols=60 Identities=33% Similarity=0.457 Sum_probs=28.0
Q ss_pred CCccEEEccCCCCCcCCCccCCCCC-CCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCccc
Q 004640 284 PSLYVFNISMNALDGSIPSSFGNMK-FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK 346 (740)
Q Consensus 284 ~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 346 (740)
+.++.|++.+|.++.+ +.....+. +|+.|++++|++. .+|.... .+++|+.|++++|++.
T Consensus 116 ~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 116 TNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS 176 (394)
T ss_pred cceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh
Confidence 3455555555555532 22233332 5555555555554 4432222 3555555555555444
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=6.2e-11 Score=108.05 Aligned_cols=121 Identities=27% Similarity=0.414 Sum_probs=38.9
Q ss_pred cCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccccC-CCCCCCEEEcCCCcccccCcccccCCCCCCEEECCCCCCCC
Q 004640 28 LNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSK-GLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDDTGFKG 106 (740)
Q Consensus 28 Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 106 (740)
+..+.|. .++ .+.++.+++.|+|++|.|+.+..++ .+.+|+.|+|++|.|+.. ..+..+++|++|++++|+|+
T Consensus 4 lt~~~i~-~~~--~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~- 77 (175)
T PF14580_consen 4 LTANMIE-QIA--QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS- 77 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----
T ss_pred ccccccc-ccc--ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-
Confidence 4555566 454 3667788999999999999998876 689999999999999875 35888999999999999999
Q ss_pred cCCcccc-CCCCCCCEEEcCCCCCCCCCCCcEEEccCCCCcCcCChhhhccCCCCcEEEccCCccc
Q 004640 107 TLDIREF-DSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN 171 (740)
Q Consensus 107 ~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 171 (740)
.+.. .+ ..+|+|++|++++|+|.++. ....+..+++|+.|++.+|++.
T Consensus 78 ~i~~-~l~~~lp~L~~L~L~~N~I~~l~----------------~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 SISE-GLDKNLPNLQELYLSNNKISDLN----------------ELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S-CH-HHHHH-TT--EEE-TTS---SCC----------------CCGGGGG-TT--EEE-TT-GGG
T ss_pred cccc-chHHhCCcCCEEECcCCcCCChH----------------HhHHHHcCCCcceeeccCCccc
Confidence 6654 34 46899999999999987651 1223445555666666665554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.5e-10 Score=122.35 Aligned_cols=46 Identities=37% Similarity=0.657 Sum_probs=24.3
Q ss_pred ccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCC
Q 004640 561 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 608 (740)
Q Consensus 561 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 608 (740)
..++.+++++.|++++|.++.+.. ++.+.+++.|++++|.++...|
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 344555555555555555554433 5555555555555555554433
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.3e-11 Score=126.50 Aligned_cols=192 Identities=28% Similarity=0.438 Sum_probs=131.1
Q ss_pred CcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEE
Q 004640 260 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 339 (740)
Q Consensus 260 ~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 339 (740)
.-...|++.|++. ++|..+.. +..|+.+.|..|.+. .+|..+..+..|+.|||+.|+++ .+|..++ .--|+.|-
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLI 149 (722)
T ss_pred chhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEE
Confidence 3356677778777 77776655 557777777777777 66777777888888888888887 7777775 34577777
Q ss_pred ccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcce
Q 004640 340 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 419 (740)
Q Consensus 340 l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 419 (740)
+++|+++ .+|+.++.+..|..|+.+.|.+. .+|..+.++.+|+.|.++.|++...++... ...|..
T Consensus 150 ~sNNkl~------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~ 215 (722)
T KOG0532|consen 150 VSNNKLT------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIR 215 (722)
T ss_pred EecCccc------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceee
Confidence 7777766 36777777777777777777777 456667777777777777777776555443 556667
Q ss_pred EEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCCeeeecCCccccC---CCCCCEEEccCC
Q 004640 420 VHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCE---LNQLQLLDLSNN 486 (740)
Q Consensus 420 L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~Ls~n 486 (740)
||++.|++. .+|-.|..|..|++|-|.+|.+. .+|..++. ..=.++|+..-+
T Consensus 216 lDfScNkis--------------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 216 LDFSCNKIS--------------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecccCcee--------------ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 766666554 56777777777888888877776 33433332 222455555555
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=5.8e-10 Score=124.91 Aligned_cols=114 Identities=32% Similarity=0.492 Sum_probs=102.7
Q ss_pred CCCEEEccCCcccccCCCCcccccccccccCCCCCcccccccccccCCCcccccccchheehhhhcccCcEEEccCCcCC
Q 004640 477 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 556 (740)
Q Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 556 (740)
.++.|+|++|.+.+.+|..+..+. +|+.|+|++|.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-------------------------------------------~L~~L~Ls~N~l~ 455 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-------------------------------------------HLQSINLSGNSIR 455 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-------------------------------------------CCCEEECCCCccc
Confidence 478899999999998888776644 8999999999999
Q ss_pred CCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCC-CCCCEEecCCCccccccCc
Q 004640 557 GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILE 633 (740)
Q Consensus 557 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~l~l~~N~l~~~~~~ 633 (740)
+.+|..++.+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+... .++..+++.+|+..|..|.
T Consensus 456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999988764 5678999999988776543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=4e-11 Score=113.14 Aligned_cols=108 Identities=27% Similarity=0.377 Sum_probs=79.4
Q ss_pred CCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccccCCCCCCCEEEcCCCcccccCcccccCCCCCCEEE
Q 004640 19 HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELY 98 (740)
Q Consensus 19 ~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 98 (740)
-...|+.+|||+|.|+ .|+ .+..-.|.++.|++|+|.+..+..++.+++|++||||+|.++.. ...-.++-+.+.|.
T Consensus 282 TWq~LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchh-hhh-hhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence 4457788888888888 777 67777788888888888888887788888888888888877642 23334577788888
Q ss_pred CCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCC
Q 004640 99 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132 (740)
Q Consensus 99 L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 132 (740)
|+.|.|. .+. .+.++-.|..||+++|+|+.+
T Consensus 359 La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 359 LAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred hhhhhHh-hhh--hhHhhhhheeccccccchhhH
Confidence 8888776 333 466666777777777776544
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.2e-11 Score=117.52 Aligned_cols=187 Identities=20% Similarity=0.126 Sum_probs=79.4
Q ss_pred cCCCCCEEEcCCCCCCCCCchHHHhcCCCCCEEEcCCCcccccCc--CCCCCCCCcCEEEcccCcCcccCChhhhhcCCC
Q 004640 208 HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFW--LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPS 285 (740)
Q Consensus 208 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~ 285 (740)
++..|+.+.+.++.+...........|++++.|+|++|-+....+ .....+|+|+.|+++.|++.-.........++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 344555555555554422111223455555555555555443221 123445555555555555542222222222445
Q ss_pred ccEEEccCCCCCcCC-CccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccc
Q 004640 286 LYVFNISMNALDGSI-PSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL 364 (740)
Q Consensus 286 L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~ 364 (740)
|+.|.|+.|.++... -.....+|+|+.|+|.+|... .+...-+.-+..|+.|||++|.+.. .......
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~----------~~~~~~~ 267 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLID----------FDQGYKV 267 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccc----------ccccccc
Confidence 555555555554211 112234455555555555311 1111112223445555555554432 0001223
Q ss_pred cCcCCCCeEECcCCccccCC-ccc-----ccccCCCCEEEccCCcCc
Q 004640 365 GNLTWLIHIIMPENHLEGPI-PVE-----FCQLYSLQILDISDNNIS 405 (740)
Q Consensus 365 ~~l~~L~~L~l~~n~i~~~~-~~~-----~~~l~~L~~L~l~~n~~~ 405 (740)
+.++.|..|+++.+++..+- |+. ....++|++|++..|++.
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 44455555555555544331 111 223445555555555553
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=5.1e-10 Score=83.77 Aligned_cols=60 Identities=48% Similarity=0.618 Sum_probs=33.4
Q ss_pred cCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCccc
Q 004640 544 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 603 (740)
Q Consensus 544 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i 603 (740)
+|++|++++|+++.+.+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555555445555555555555555555555555555555555555555543
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=6.1e-10 Score=83.34 Aligned_cols=61 Identities=39% Similarity=0.622 Sum_probs=58.5
Q ss_pred ccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecCCCcc
Q 004640 567 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 627 (740)
Q Consensus 567 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l 627 (740)
++|++|++++|+++.+.+++|.++++|++|++++|+++.+.|++|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999999999999999999999999999999999999999999999999985
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-10 Score=110.94 Aligned_cols=115 Identities=22% Similarity=0.246 Sum_probs=51.2
Q ss_pred hhcCCCCCEEEcCCCCCCCCCc---hHHHhcCCCCCEEEcCCCcccc----cCcCCCCCCCCcCEEEcccCcCcccCChh
Q 004640 206 LYHQHDLEYVRLSHIKMNGEFP---NWLLENNTKLATLFLVNDSLAG----PFWLPIHSHKRLGILDISNNNIRGHIPVE 278 (740)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 278 (740)
+...+.|+.+.+..|.+..... ..-+..++.|+.|++++|.++. .....+..++.|++|++++|.+...-...
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 3444555555555555443221 1123455555555555555543 11223444455555555555554222222
Q ss_pred hh----hcCCCccEEEccCCCCCcC----CCccCCCCCCCcEEEcccCcC
Q 004640 279 IG----DVLPSLYVFNISMNALDGS----IPSSFGNMKFLQLLDLSNNQL 320 (740)
Q Consensus 279 ~~----~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l 320 (740)
+. ...|+|++|.+.+|.|+.. +.......+.|+.|+|++|++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 21 1234555555555555421 111223345555555555555
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=2.2e-10 Score=122.82 Aligned_cols=247 Identities=29% Similarity=0.313 Sum_probs=131.0
Q ss_pred CCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCc
Q 004640 283 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 362 (740)
Q Consensus 283 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~ 362 (740)
+..++.+.++.|.|.. +-..+..+++|+.|++.+|++. .+... ...+++|++|++++|.|+. -.
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~-------------i~ 134 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK-------------LE 134 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc-------------cc
Confidence 3455555566666553 1223455566666666666665 44332 2246666666666666553 11
Q ss_pred cccCcCCCCeEECcCCccccCCcccccccCCCCEEEccCCcCcccCCCCcCCCCcceEEccCcccccccccccCCccCcC
Q 004640 363 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 442 (740)
Q Consensus 363 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~ 442 (740)
.+..++.|+.|++.+|.|..+ ..+..+.+|+.+++++|++......
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-------------------------------- 180 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-------------------------------- 180 (414)
T ss_pred chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhh--------------------------------
Confidence 233344466666666666532 2334456666666666666533221
Q ss_pred cCChhhhhcCCCCEEEccCCeeeecCCccccCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccccccc
Q 004640 443 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 522 (740)
Q Consensus 443 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (740)
. ...+.+++.+++.+|.+.... .+..+..+..+++..|.++..-+...
T Consensus 181 ---~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~l~~-------------------------- 228 (414)
T KOG0531|consen 181 ---E-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEGLNE-------------------------- 228 (414)
T ss_pred ---h-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccCccc--------------------------
Confidence 0 233455556666666555222 23333344444555555542211000
Q ss_pred CCCcccccccchheehhhhcc--cCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccC
Q 004640 523 GPQGDFTTKNIAYIYQGKVLS--LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 600 (740)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 600 (740)
+. +|+.+++++|.+.. .+..+..+..+..|++++|++... ..+...+.+..+....
T Consensus 229 -------------------~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 229 -------------------LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLND 286 (414)
T ss_pred -------------------chhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCc
Confidence 01 25666666766663 224456667777777777777655 3455566667777777
Q ss_pred cccCcc---CCcc-ccCCCCCCEEecCCCccccccCc
Q 004640 601 NKLNGK---IPHQ-LVELKTLEVFSVAYNNLSGEILE 633 (740)
Q Consensus 601 N~i~~~---~~~~-~~~l~~L~~l~l~~N~l~~~~~~ 633 (740)
|++... .+.. ....+.+..+.+.+|+.....+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred chhcchhhhhccccccccccccccccccCcccccccc
Confidence 776521 1111 33456677777777777765443
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.2e-10 Score=112.99 Aligned_cols=153 Identities=23% Similarity=0.329 Sum_probs=74.0
Q ss_pred ccCCCCCCEEEcCCCCCCCccCh-hhcCCCCCCCEEECCCCcCCcccc---cCCCCCCCEEEcCCCccccc-CcccccCC
Q 004640 17 LTHLSSLRSLNLNGNSLEGSIDV-KEFDSLRDLEELDIGENKIDKFVV---SKGLRKLRYLSLSGIKLNHS-ILSSLTVF 91 (740)
Q Consensus 17 f~~l~~L~~L~Ls~n~i~~~i~~-~~f~~l~~L~~L~Ls~n~i~~~~~---~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l 91 (740)
...|++++.||||.|-+...-+. .....+|+|+.|+|+.|++..... -..+++|+.|.|+.|.++-. .......+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 44566666666666665521111 223456666666666666543332 23456666666666665422 11223445
Q ss_pred CCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCC---------CCCcEEEccCCCCcCcCCh-----hhhccC
Q 004640 92 SSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL---------VVPQELRLSDNHFRIPISL-----EPLFNH 157 (740)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~---------~~L~~L~l~~n~~~~~~~~-----~~~~~~ 157 (740)
|+|+.|.|..|... .+......-+..|++|||++|++-+. +.|+.|.++.+.+...... ......
T Consensus 222 Psl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 66666666666322 11111333445566666666654332 4444444444443211000 012334
Q ss_pred CCCcEEEccCCcc
Q 004640 158 SRLKIFHAKNNQM 170 (740)
Q Consensus 158 ~~L~~L~l~~~~~ 170 (740)
.+|++|++..|++
T Consensus 301 ~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 301 PKLEYLNISENNI 313 (505)
T ss_pred ccceeeecccCcc
Confidence 5666666666665
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=4.5e-10 Score=108.94 Aligned_cols=251 Identities=22% Similarity=0.233 Sum_probs=141.7
Q ss_pred ccCCCCCCEEEcCCCCCCC----ccChhhcCCCCCCCEEECCCCcC----Ccccc--------cCCCCCCCEEEcCCCcc
Q 004640 17 LTHLSSLRSLNLNGNSLEG----SIDVKEFDSLRDLEELDIGENKI----DKFVV--------SKGLRKLRYLSLSGIKL 80 (740)
Q Consensus 17 f~~l~~L~~L~Ls~n~i~~----~i~~~~f~~l~~L~~L~Ls~n~i----~~~~~--------~~~l~~L~~L~Ls~n~l 80 (740)
......++.++||+|.+.. .+. ..+.+.++|+..++|.--. ..++. +.++++|++||||+|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~-~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIA-KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHH-HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4456677888888887751 133 4566777888888774321 22222 45667888888888877
Q ss_pred cccCcccc----cCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCCCCCcEEEccCCCCcC---cCChhh
Q 004640 81 NHSILSSL----TVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRI---PISLEP 153 (740)
Q Consensus 81 ~~~~~~~~----~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~---~~~~~~ 153 (740)
....+..| +.+..|++|.|.+|++.. .....+++ .|.+|. ....+..-+.|+.+..++|.+.. ......
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~--al~~l~-~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGR--ALFELA-VNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHH--HHHHHH-HHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 54444433 457788888888887652 11112111 111111 11112222455555555555421 111223
Q ss_pred hccCCCCcEEEccCCcccccccccccCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCch---HH
Q 004640 154 LFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPN---WL 230 (740)
Q Consensus 154 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~ 230 (740)
|..++.|+.+.+..|.+..... ..+...+..+++|+.||+..|.++..... ..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~------------------------~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGV------------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred HHhccccceEEEecccccCchh------------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 5556677777777776543221 12334566777777777777766643222 22
Q ss_pred HhcCCCCCEEEcCCCcccccCcCC-----CCCCCCcCEEEcccCcCcccCC----hhhhhcCCCccEEEccCCCCC
Q 004640 231 LENNTKLATLFLVNDSLAGPFWLP-----IHSHKRLGILDISNNNIRGHIP----VEIGDVLPSLYVFNISMNALD 297 (740)
Q Consensus 231 ~~~~~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~L~ls~n~l~~~~~----~~~~~~~~~L~~L~L~~n~i~ 297 (740)
+..++.|++|++++|.+...-... -...|.|++|.+.+|.++..-. ..... .|.|+.|+|++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLG 311 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccccc
Confidence 345567777777777766533222 1336788888888888763211 11122 578899999999883
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.5e-10 Score=120.43 Aligned_cols=127 Identities=26% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEE
Q 004640 259 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL 338 (740)
Q Consensus 259 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 338 (740)
..++.+.+..|.+. .+...+. .+++|+.|++.+|+|..+.. .+..+++|++|++++|.|+ .+..- ..++.|+.|
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhhccc-chhhhhcchheeccccccc-cccch--hhccchhhh
Confidence 34444445555554 2111121 24566666666666664322 1455666666666666666 44332 234556666
Q ss_pred EccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCc-ccccccCCCCEEEccCCcCc
Q 004640 339 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP-VEFCQLYSLQILDISDNNIS 405 (740)
Q Consensus 339 ~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~ 405 (740)
++++|.|.. ...+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+.
T Consensus 146 ~l~~N~i~~-------------~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISD-------------ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchh-------------ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666666653 2234446677777777777665443 2 456677777777777665
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.60 E-value=4e-08 Score=112.57 Aligned_cols=128 Identities=27% Similarity=0.372 Sum_probs=76.0
Q ss_pred CCCCEEEcCCCcccccCcCCCCCCCCcCEEEcccCc--CcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcE
Q 004640 235 TKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN--IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 312 (740)
Q Consensus 235 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~--l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 312 (740)
...+.+.+-+|.+..... -..+++|++|-+.+|. +. .++..+|..+|.|++|||++|.--+.+|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 445555555554432211 1123456666666664 44 666666666777777777766555566777777777777
Q ss_pred EEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCC
Q 004640 313 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 378 (740)
Q Consensus 313 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 378 (740)
|++++..++ .+|.++. ++..|.+|++..+.-.+ .++.....+.+|++|.+..-
T Consensus 600 L~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~-----------~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLE-----------SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchHHH-HHHhhheeccccccccc-----------cccchhhhcccccEEEeecc
Confidence 777777776 6666654 46677777666554332 23444555666666666544
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=4.1e-08 Score=112.46 Aligned_cols=105 Identities=31% Similarity=0.331 Sum_probs=60.0
Q ss_pred CCCCCEEEcCCCC--CCCccChhhcCCCCCCCEEECCCCc-CCcccc-cCCCCCCCEEEcCCCcccccCcccccCCCCCC
Q 004640 20 LSSLRSLNLNGNS--LEGSIDVKEFDSLRDLEELDIGENK-IDKFVV-SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLR 95 (740)
Q Consensus 20 l~~L~~L~Ls~n~--i~~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 95 (740)
+++|++|-+..|. +. .++...|..++.|++|||++|. +..+|. ++.+-+|++|+++++.+. ..|..++++.+|.
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 4456666666664 34 4554456666666666666553 444444 556666666666666665 3455666666666
Q ss_pred EEECCCCCCCCcCCccccCCCCCCCEEEcCCC
Q 004640 96 ELYLDDTGFKGTLDIREFDSFNNLEVLDMSYN 127 (740)
Q Consensus 96 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n 127 (740)
+|++..+.....++. ....+++|++|.+...
T Consensus 622 ~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPG-ILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccc-hhhhcccccEEEeecc
Confidence 666666554433332 4444666666665443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.2e-09 Score=115.33 Aligned_cols=84 Identities=36% Similarity=0.316 Sum_probs=39.3
Q ss_pred ccCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCC-ccccCCCCCCEEe
Q 004640 543 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFS 621 (740)
Q Consensus 543 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~l~ 621 (740)
+.|+.|||+.|.+..+.--...++. |..|.+++|.++.+ .++.++.+|+.||+++|-|.+.-. .-+..+..|+.|+
T Consensus 209 ~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred ccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 3455555555544422111122232 55555555555544 345555555555555555543211 1122334555556
Q ss_pred cCCCcccc
Q 004640 622 VAYNNLSG 629 (740)
Q Consensus 622 l~~N~l~~ 629 (740)
|.|||+.|
T Consensus 286 LeGNPl~c 293 (1096)
T KOG1859|consen 286 LEGNPLCC 293 (1096)
T ss_pred hcCCcccc
Confidence 66666554
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.41 E-value=4.8e-07 Score=81.44 Aligned_cols=108 Identities=21% Similarity=0.317 Sum_probs=88.8
Q ss_pred CCCEEEcCCCCCCCccChhhcC-CCCCCCEEECCCCcCCcccccCCCCCCCEEEcCCCcccccCcccccCCCCCCEEECC
Q 004640 22 SLRSLNLNGNSLEGSIDVKEFD-SLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLD 100 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 100 (740)
.=+.++|.+.++. .+. . ++ -+.+...+||+.|.+..++.+..+++|.+|.|.+|+|+.+.|.--..+++|++|.|.
T Consensus 20 ~e~e~~LR~lkip-~ie-n-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 20 RERELDLRGLKIP-VIE-N-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccc-chh-h-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3577899999887 555 2 22 235788999999999999999999999999999999998888777778999999999
Q ss_pred CCCCCCcCCccccCCCCCCCEEEcCCCCCCCC
Q 004640 101 DTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL 132 (740)
Q Consensus 101 ~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 132 (740)
+|+|........+..+|+|++|.+-+|.+++.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcc
Confidence 99988433334578889999999999988765
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=9.2e-09 Score=97.54 Aligned_cols=172 Identities=19% Similarity=0.169 Sum_probs=108.2
Q ss_pred CCCCEEECCCCcCCcccc---cCCCCCCCEEEcCCCcccccCcccccCCCCCCEEECCCCC-CCCcCCccccCCCCCCCE
Q 004640 46 RDLEELDIGENKIDKFVV---SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDDTG-FKGTLDIREFDSFNNLEV 121 (740)
Q Consensus 46 ~~L~~L~Ls~n~i~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~ 121 (740)
..|++||||+..|+.-.- +..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.....-.++.++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 368999999888765544 6788999999999999988888888888999999998764 442222224678888999
Q ss_pred EEcCCCCCCCC----------CCCcEEEccCCC--CcCcCChhhhccCCCCcEEEccCCcccccccccccCcCCCccccE
Q 004640 122 LDMSYNKIDNL----------VVPQELRLSDNH--FRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQS 189 (740)
Q Consensus 122 L~Ls~n~i~~~----------~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 189 (740)
|+++++.+..- ..++.|+++++. +....-..-...++++.+||++++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-------------------- 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-------------------- 324 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc--------------------
Confidence 99988875432 556666666652 1111011112445666666666543
Q ss_pred EEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHH--HhcCCCCCEEEcCCCc
Q 004640 190 LSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL--LENNTKLATLFLVNDS 246 (740)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~ 246 (740)
.+.......+..++.|+++.++.|.. .+|..+ +...|.|.+|++.++-
T Consensus 325 -------~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 -------MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -------ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 22223334445666677777766642 233322 2455667777766553
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=6.3e-09 Score=109.97 Aligned_cols=109 Identities=27% Similarity=0.313 Sum_probs=47.7
Q ss_pred hhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCccccc--CCCCCCCEEEcCCCcccccCcccccCCC
Q 004640 15 SSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVS--KGLRKLRYLSLSGIKLNHSILSSLTVFS 92 (740)
Q Consensus 15 ~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 92 (740)
.+++-++.+++|||++|+++ .++ .+..|++|++|||++|++..++.+ .++. |+.|.+++|.++.. ..++++.
T Consensus 181 ~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence 34444445555555555544 222 344455555555555554444442 2232 45555554444422 2344444
Q ss_pred CCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCC
Q 004640 93 SLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 129 (740)
Q Consensus 93 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i 129 (740)
+|+.||+++|-+.+.-.-..++.+..|+.|.|.+|.+
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555555555443222111233334444444444443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.1e-07 Score=90.23 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCCEEECCCCcCCcccc---c-CCCCCCCEEEcCCCccccc--CcccccCCCCCCEEECCCCCCCCcCCcccc-CCCCCC
Q 004640 47 DLEELDIGENKIDKFVV---S-KGLRKLRYLSLSGIKLNHS--ILSSLTVFSSLRELYLDDTGFKGTLDIREF-DSFNNL 119 (740)
Q Consensus 47 ~L~~L~Ls~n~i~~~~~---~-~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~~l~~L 119 (740)
-++.|.+.++.|..... + ...+.++++||.+|.|++. +...++++|.|++|+++.|++...|. .. ....+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccce
Confidence 34455555555544443 2 3456666666666666543 22335566677777777766653332 12 233445
Q ss_pred CEEEcCCC
Q 004640 120 EVLDMSYN 127 (740)
Q Consensus 120 ~~L~Ls~n 127 (740)
+.|-|.+.
T Consensus 124 ~~lVLNgT 131 (418)
T KOG2982|consen 124 RVLVLNGT 131 (418)
T ss_pred EEEEEcCC
Confidence 55544443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=3.9e-07 Score=85.59 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCCCcCEEEcccCcCcccCChhhhh-----cCCCccEEEccCCCCCcCCCc-----cC--CCCCCCcEEEcccCcCC
Q 004640 257 SHKRLGILDISNNNIRGHIPVEIGD-----VLPSLYVFNISMNALDGSIPS-----SF--GNMKFLQLLDLSNNQLT 321 (740)
Q Consensus 257 ~~~~L~~L~ls~n~l~~~~~~~~~~-----~~~~L~~L~L~~n~i~~~~~~-----~~--~~l~~L~~L~L~~n~l~ 321 (740)
..+.|+.|.+.+|-++..-...++. ..|+|..|-..+|.+.+..-. .| ..++-|..|.+.+|++.
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 3344555555555554222222221 135666777776655432211 11 25677777888888886
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.4e-07 Score=89.78 Aligned_cols=176 Identities=18% Similarity=0.100 Sum_probs=88.8
Q ss_pred CCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc--cCCCCCCCEEEcCCCc-ccccCc-ccccCCCCCCEE
Q 004640 22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGIK-LNHSIL-SSLTVFSSLREL 97 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~--~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L 97 (740)
.|++||||...|+..--...+..|.+|+.|+|-++++.+-.. ++...+|+.|+++.+. ++.... -.|..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355566665555422111344555566666666555554433 5555566666665543 222111 124455566666
Q ss_pred ECCCCCCCCcCCccccCCC-CCCCEEEcCCCC----CCCC-------CCCcEEEccCCCCcCcCChhhhccCCCCcEEEc
Q 004640 98 YLDDTGFKGTLDIREFDSF-NNLEVLDMSYNK----IDNL-------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHA 165 (740)
Q Consensus 98 ~L~~n~i~~~~~~~~~~~l-~~L~~L~Ls~n~----i~~~-------~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 165 (740)
+++.|..........+.+. ++|+.|+++++. .+++ +.+.+|||+++..-...-...+.+++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 6665554322211112221 445555555543 1111 556666666654322333455778888888888
Q ss_pred cCCcccccccccccCcCCCccccEEEecCCCCCCC
Q 004640 166 KNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV 200 (740)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 200 (740)
+.|.... +..+...-....+.+|++ .++...+
T Consensus 346 sRCY~i~--p~~~~~l~s~psl~yLdv-~g~vsdt 377 (419)
T KOG2120|consen 346 SRCYDII--PETLLELNSKPSLVYLDV-FGCVSDT 377 (419)
T ss_pred hhhcCCC--hHHeeeeccCcceEEEEe-ccccCch
Confidence 8886432 222333344457888888 5544433
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=5.3e-07 Score=85.85 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=36.4
Q ss_pred cccCcEEEccCCcCCCCC-cccccCcccCceEecCCcccCccC-CccccCCCCCCEEeccCcccC
Q 004640 542 LSLLSGLYLSCNKLIGHI-PPQIGNLTRIQTLNLSYNNLTGLI-PSTFSNLKHIESLDLSYNKLN 604 (740)
Q Consensus 542 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~i~ 604 (740)
++++..+.+..|.+.... ...+..++.+.-|+|+.|+|.+.. -+.+.++++|..|.+++|++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 345666666666555332 223555566666777777665432 244556666777777777665
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.1e-07 Score=79.90 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=54.5
Q ss_pred cCcEEEccCCcCCCCCcccccCcccCceEecCCcccCccCCccccCCCCCCEEeccCcccCccCCccccCCCCCCEEecC
Q 004640 544 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 623 (740)
Q Consensus 544 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~l~l~ 623 (740)
.++.|+|++|.++ .+|..+..++.|+.|+++.|.+... |..+..+.++-.|+..+|.+.. +|-.+.--+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhc
Confidence 4666777777777 4555677777777777777777743 4555557777777777777763 33222222333444556
Q ss_pred CCccccccCcc
Q 004640 624 YNNLSGEILEW 634 (740)
Q Consensus 624 ~N~l~~~~~~~ 634 (740)
+++|.+.++..
T Consensus 155 nepl~~~~~~k 165 (177)
T KOG4579|consen 155 NEPLGDETKKK 165 (177)
T ss_pred CCcccccCccc
Confidence 66666655543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=4.9e-06 Score=56.68 Aligned_cols=40 Identities=28% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc
Q 004640 22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV 63 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~ 63 (740)
+|++|++++|.|+ .++ ..+.+|++|++|++++|+++++++
T Consensus 2 ~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCCCCCcC
Confidence 4556666666665 455 345566666666666665555443
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=6.4e-06 Score=74.38 Aligned_cols=122 Identities=21% Similarity=0.254 Sum_probs=90.2
Q ss_pred eecCCCCCCcccchhccC-CCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc--cCCCCCCCEEEcCCC
Q 004640 2 LNLSGNSFNNTILSSLTH-LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGI 78 (740)
Q Consensus 2 LdLs~n~i~~~~~~~f~~-l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~--~~~l~~L~~L~Ls~n 78 (740)
+||-+.++..+.. ++. ......+||+.|.+. .++ .|..++.|.+|.|++|+|+.+.+ -..+++|+.|.|.+|
T Consensus 24 ~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 24 LDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccchhh--ccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4555555554333 111 236778999999988 555 58899999999999999999988 356788999999999
Q ss_pred cccccC-cccccCCCCCCEEECCCCCCCCcCC--ccccCCCCCCCEEEcCCCC
Q 004640 79 KLNHSI-LSSLTVFSSLRELYLDDTGFKGTLD--IREFDSFNNLEVLDMSYNK 128 (740)
Q Consensus 79 ~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~Ls~n~ 128 (740)
+|.... -..++.||+|++|.+-+|.++..-. .-.+..+|+|+.||...-.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 986543 3457789999999999998763211 1246788999999987654
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=2.5e-07 Score=77.66 Aligned_cols=93 Identities=23% Similarity=0.289 Sum_probs=59.3
Q ss_pred CCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccCCc
Q 004640 306 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP 385 (740)
Q Consensus 306 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 385 (740)
+...|+..+|++|.+. .+|+.+....+.++.|++++|.+.+ .|..+..++.|+.|+++.|.+. ..|
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd------------vPeE~Aam~aLr~lNl~~N~l~-~~p 116 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD------------VPEELAAMPALRSLNLRFNPLN-AEP 116 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh------------chHHHhhhHHhhhcccccCccc-cch
Confidence 3445566666666666 6666665555566666666666654 5555666777777777777666 345
Q ss_pred ccccccCCCCEEEccCCcCcccCCCCc
Q 004640 386 VEFCQLYSLQILDISDNNISGSLPSCF 412 (740)
Q Consensus 386 ~~~~~l~~L~~L~l~~n~~~~~~~~~~ 412 (740)
..+..+.++..|+..+|.+..+..+.|
T Consensus 117 ~vi~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred HHHHHHHhHHHhcCCCCccccCcHHHh
Confidence 556667777777777777765554443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=9.4e-06 Score=55.28 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=20.6
Q ss_pred CCCEEECCCCcCCcccc-cCCCCCCCEEEcCCCcccc
Q 004640 47 DLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIKLNH 82 (740)
Q Consensus 47 ~L~~L~Ls~n~i~~~~~-~~~l~~L~~L~Ls~n~l~~ 82 (740)
+|++|++++|+|+.+++ ++.+++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 56666666666666665 5666666666666665553
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=1.6e-06 Score=81.49 Aligned_cols=192 Identities=19% Similarity=0.178 Sum_probs=107.8
Q ss_pred hhcCCCCCEEEcCCCCCCCCCchHHHh---cCCCCCEEEcCCCcccc----cC-------cCCCCCCCCcCEEEcccCcC
Q 004640 206 LYHQHDLEYVRLSHIKMNGEFPNWLLE---NNTKLATLFLVNDSLAG----PF-------WLPIHSHKRLGILDISNNNI 271 (740)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~n~~~~----~~-------~~~~~~~~~L~~L~ls~n~l 271 (740)
+..+..+..+++|+|.+......++.. +-.+|+..+++.- +++ .+ ...+..||.|+.+++|+|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 334677888888888776655555432 3345555555432 111 11 12356788888888888888
Q ss_pred cccCChhhh---hcCCCccEEEccCCCCCcCCCc-------------cCCCCCCCcEEEcccCcCCCCCchhh----hhC
Q 004640 272 RGHIPVEIG---DVLPSLYVFNISMNALDGSIPS-------------SFGNMKFLQLLDLSNNQLTGEIPEHL----AVG 331 (740)
Q Consensus 272 ~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~ 331 (740)
....|.... +.-+.|++|.+++|.+.-+.-. -.++-|.|++.....|++. ..+... +..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence 756665432 2346788888888876522111 1234577888888888776 444322 222
Q ss_pred CCCCcEEEccCCcccceeeecCCcCCCCCCccccCcCCCCeEECcCCccccC----CcccccccCCCCEEEccCCcCc
Q 004640 332 CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP----IPVEFCQLYSLQILDISDNNIS 405 (740)
Q Consensus 332 l~~L~~L~l~~n~l~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~ 405 (740)
-.+|+.+.+.+|.|... .++......+..+.+|+.|++++|.++.. +..+++.++.|+.|.+.+|-++
T Consensus 184 h~~lk~vki~qNgIrpe------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 184 HENLKEVKIQQNGIRPE------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hcCceeEEeeecCcCcc------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 24677777777766520 00000111223456667777777665532 2334455566666666666554
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=5e-05 Score=66.88 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=35.9
Q ss_pred HhcCCCCCEEEcCCCcccccCcCCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCC
Q 004640 231 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFL 310 (740)
Q Consensus 231 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 310 (740)
|.++.+|+.+.+.. .+..+....|..+++|+.+.+.++ +. .++...+..+++++.+.+.. .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 34444555544442 333344444444444555554443 33 34444444344444444433 2222333344444444
Q ss_pred cEEEcccCcCCCCCchhhhhCCCCCcEEE
Q 004640 311 QLLDLSNNQLTGEIPEHLAVGCVNLQFLM 339 (740)
Q Consensus 311 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 339 (740)
+.+++..+ +. .++...|.++ +|+.+.
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEE
Confidence 44444433 33 3444444333 444443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.75 E-value=1.6e-05 Score=75.13 Aligned_cols=95 Identities=22% Similarity=0.259 Sum_probs=72.8
Q ss_pred cChhhcCCCCCCCEEECCCCcCCcccccCCCCCCCEEEcCCC--cccccCcccccCCCCCCEEECCCCCCCCcCCccccC
Q 004640 37 IDVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGI--KLNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFD 114 (740)
Q Consensus 37 i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 114 (740)
+. ..+..+..|+.|++.+..++++..+..|++|++|.++.| ++.+..+.....+|+|++|++++|+|...-....+.
T Consensus 35 ~~-gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LG-GLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cc-cccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 44 556677888889999888888888999999999999999 666655555667799999999999988311122456
Q ss_pred CCCCCCEEEcCCCCCCCC
Q 004640 115 SFNNLEVLDMSYNKIDNL 132 (740)
Q Consensus 115 ~l~~L~~L~Ls~n~i~~~ 132 (740)
.+.+|..|++.+|..+.+
T Consensus 114 ~l~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNL 131 (260)
T ss_pred hhcchhhhhcccCCcccc
Confidence 677788888888876544
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=6.4e-05 Score=66.22 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCCCCCCcCEEEcccCcCcccCChhhhhcCCCccEEEccCCCCCcCCCccCCCCCCCcEEEcccCcCCCCCchhhhhCC
Q 004640 253 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC 332 (740)
Q Consensus 253 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 332 (740)
..|.++++|+.+.+.. .+. .++...|..+++|+.+.+..+ +..+...+|.++++|+.+.+.+ .+. .++...|..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 3455555666666653 344 455555555555666666553 4444455555555566666644 333 4555555555
Q ss_pred CCCcEEEccC
Q 004640 333 VNLQFLMLSN 342 (740)
Q Consensus 333 ~~L~~L~l~~ 342 (740)
++|+.+++..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 5565555543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.1e-05 Score=86.93 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=39.2
Q ss_pred CCCCCCCEEECCCCcCCcccc---cCCCCCCCEEEcCCCcccccCcccccCCCCCCEEECCCCCCCCcCCccccCCCCCC
Q 004640 43 DSLRDLEELDIGENKIDKFVV---SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNL 119 (740)
Q Consensus 43 ~~l~~L~~L~Ls~n~i~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 119 (740)
..+|.|+.|.+++-.+..-.. ....++|..||+|+++++.. ..++.+++|++|.+.+-.+...-....+..+++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 344555555555444322221 34455555555555555433 3445555555555555444421111234445555
Q ss_pred CEEEcCCCC
Q 004640 120 EVLDMSYNK 128 (740)
Q Consensus 120 ~~L~Ls~n~ 128 (740)
+.||+|...
T Consensus 223 ~vLDIS~~~ 231 (699)
T KOG3665|consen 223 RVLDISRDK 231 (699)
T ss_pred Ceeeccccc
Confidence 555555443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=3.9e-05 Score=86.08 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=108.9
Q ss_pred CCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCc--------cc--c-------cCCCCCCCEEEcCCCccc
Q 004640 19 HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDK--------FV--V-------SKGLRKLRYLSLSGIKLN 81 (740)
Q Consensus 19 ~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~--------~~--~-------~~~l~~L~~L~Ls~n~l~ 81 (740)
+--+++..++.+.... ........... |++|.|.+-.... +. . -..-.+|++||+++...-
T Consensus 58 ~~f~ltki~l~~~~~~-~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~ 135 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQ-HQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF 135 (699)
T ss_pred hhheeEEeeccceecc-hhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence 3346677777776665 33323444444 7777776432110 00 0 122367888888876542
Q ss_pred -ccCcccc-cCCCCCCEEECCCCCCCCcCCccccCCCCCCCEEEcCCCCCCCC------CCCcEEEccCCCCcCcCChhh
Q 004640 82 -HSILSSL-TVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL------VVPQELRLSDNHFRIPISLEP 153 (740)
Q Consensus 82 -~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~------~~L~~L~l~~n~~~~~~~~~~ 153 (740)
...+..+ ..+|+|++|.+++-.+...--.....++|+|..||+|+.+++++ ++|+.|.+.+-.+........
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHH
Confidence 2233333 34788888888887654221112456778888888888887755 566666666666554444555
Q ss_pred hccCCCCcEEEccCCcccccccccccCcCCCccccEEEecCCCCCCCccchhhhcCCCCCEEEcCCCCCCCCCchHHHhc
Q 004640 154 LFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLEN 233 (740)
Q Consensus 154 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 233 (740)
++.+++|+.||+|.-...... ++ ....-+.-..+++|+.||.|+..+...+-+.+...
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~-----------~i-----------i~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDT-----------KI-----------IEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred HhcccCCCeeeccccccccch-----------HH-----------HHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 667777777777654322110 00 00001111235677777777666665555544444
Q ss_pred CCCCCEEE
Q 004640 234 NTKLATLF 241 (740)
Q Consensus 234 ~~~L~~L~ 241 (740)
-++|+.+.
T Consensus 274 H~~L~~i~ 281 (699)
T KOG3665|consen 274 HPNLQQIA 281 (699)
T ss_pred CccHhhhh
Confidence 44554443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00037 Score=72.04 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=51.4
Q ss_pred cccccCCCCEEEccCCcCcccCCCCcCCCCcceEEccCcccccccccccCCccCcCcCChhhhhcCCCCEEEccCC-eee
Q 004640 387 EFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHN-NLE 465 (740)
Q Consensus 387 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~ 465 (740)
.+..+.+++.|++++|.++..+ . -+.+|++|.++++.--. .+|+.+ .++|+.|++++| .+.
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLt-------------sLP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLT-------------TLPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcc-------------cCCchh--hhhhhheEccCccccc
Confidence 3556789999999999888664 1 25679999887743211 334333 257899999988 554
Q ss_pred ecCCccccCCCCCCEEEccCCcc
Q 004640 466 GEVPVQLCELNQLQLLDLSNNSL 488 (740)
Q Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l 488 (740)
..| ++|+.|+++.+..
T Consensus 109 -sLP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 109 -GLP------ESVRSLEIKGSAT 124 (426)
T ss_pred -ccc------cccceEEeCCCCC
Confidence 233 4578888876654
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.39 E-value=1.6e-05 Score=79.73 Aligned_cols=298 Identities=19% Similarity=0.104 Sum_probs=155.0
Q ss_pred CCCEEEcCCCCCCCccCh-hhcCCCCCCCEEECCCCc-CCcccc---cCCCCCCCEEEcCCC-cccccCcc-cccCCCCC
Q 004640 22 SLRSLNLNGNSLEGSIDV-KEFDSLRDLEELDIGENK-IDKFVV---SKGLRKLRYLSLSGI-KLNHSILS-SLTVFSSL 94 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~-~~f~~l~~L~~L~Ls~n~-i~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L 94 (740)
.|+.|.++++.=.+.-+. ..-.++++++.|++.++. +++..- -..+++|++|+|..| .++....+ --..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466666666653211111 223566777777777665 222221 245677777777663 34433333 22346777
Q ss_pred CEEECCCCC-CCCcCCccccCCCCCCCEEEcCCCCCCCCCCCcEEEccCCCCcCcCChhhh----ccCCCCcEEEccCCc
Q 004640 95 RELYLDDTG-FKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPL----FNHSRLKIFHAKNNQ 169 (740)
Q Consensus 95 ~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~~~ 169 (740)
++++++.+. |++.-....+.++..++.+.+.++.=. +...+ ..+..+..+++..+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-------------------~le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-------------------ELEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-------------------cHHHHHHHhccChHhhccchhhhc
Confidence 777776653 332111113445555555544443211 11111 112223334433332
Q ss_pred ccccccccccCcCCCccccEEEecCCCCCCCccchhh-hcCCCCCEEEcCCCC-CCCCCchHHHhcCCCCCEEEcCCCcc
Q 004640 170 MNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFL-YHQHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVNDSL 247 (740)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~ 247 (740)
...+.. .+.......+++.++.++....+......+ .+..+|+.+.++.++ +++.....+..+++.|+.+++..+..
T Consensus 280 ~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 280 QLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred cccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 111111 111112223667777633333222222333 367899999999886 33333334456789999999988765
Q ss_pred cc--cCcCCCCCCCCcCEEEcccCcCc-ccC---ChhhhhcCCCccEEEccCCCCC-cCCCccCCCCCCCcEEEcccCcC
Q 004640 248 AG--PFWLPIHSHKRLGILDISNNNIR-GHI---PVEIGDVLPSLYVFNISMNALD-GSIPSSFGNMKFLQLLDLSNNQL 320 (740)
Q Consensus 248 ~~--~~~~~~~~~~~L~~L~ls~n~l~-~~~---~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l 320 (740)
.. .....-.+++.|+++.++++... +.- -.........++.+.|+++... ...-+.+..+++|+.+++-+++-
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 43 23344567899999999987642 110 0111122568999999999754 33344567889999999988754
Q ss_pred CCCCc-hhhhhCCCCCcEEE
Q 004640 321 TGEIP-EHLAVGCVNLQFLM 339 (740)
Q Consensus 321 ~~~~~-~~~~~~l~~L~~L~ 339 (740)
...-+ ..+-..+|++++..
T Consensus 439 vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 439 VTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhHHHHhhCccceehh
Confidence 21111 12233567766654
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.39 E-value=5.7e-06 Score=82.84 Aligned_cols=281 Identities=19% Similarity=0.105 Sum_probs=161.1
Q ss_pred CCCCEEECCCCcCCcccc----cCCCCCCCEEEcCCCc-ccccCcccc-cCCCCCCEEECCCC-CCCCcCCccccCCCCC
Q 004640 46 RDLEELDIGENKIDKFVV----SKGLRKLRYLSLSGIK-LNHSILSSL-TVFSSLRELYLDDT-GFKGTLDIREFDSFNN 118 (740)
Q Consensus 46 ~~L~~L~Ls~n~i~~~~~----~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~~~~~l~~ 118 (740)
..|+.|.+.++.=....+ -..++++++|.+.++. +++.....+ +.+++|++|++..| .++...-...-.++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 368888888886544444 3578888888888776 333332333 45888999988874 3442222213356788
Q ss_pred CCEEEcCCCC-CCCCCCCcEEEccCCCCcCcCChhhhccCCCCcEEEccCCcccccccccccCcCCCccccEEEecCCCC
Q 004640 119 LEVLDMSYNK-IDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYG 197 (740)
Q Consensus 119 L~~L~Ls~n~-i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 197 (740)
|++++++++. |++ +.++ .....+..++.+...++.-..... ..........+.++++ ..+.
T Consensus 218 L~~lNlSwc~qi~~-----------~gv~-----~~~rG~~~l~~~~~kGC~e~~le~-l~~~~~~~~~i~~lnl-~~c~ 279 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG-----------NGVQ-----ALQRGCKELEKLSLKGCLELELEA-LLKAAAYCLEILKLNL-QHCN 279 (483)
T ss_pred HHHhhhccCchhhc-----------Ccch-----HHhccchhhhhhhhcccccccHHH-HHHHhccChHhhccch-hhhc
Confidence 8888888774 221 1111 112334445555444432111100 0000111124555555 3332
Q ss_pred CCCccc--hhhhcCCCCCEEEcCCCCCCC-CCchHHHhcCCCCCEEEcCCCcc-cccCcCCC-CCCCCcCEEEcccCcCc
Q 004640 198 DGVTFP--KFLYHQHDLEYVRLSHIKMNG-EFPNWLLENNTKLATLFLVNDSL-AGPFWLPI-HSHKRLGILDISNNNIR 272 (740)
Q Consensus 198 ~~~~~~--~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~-~~~~~L~~L~ls~n~l~ 272 (740)
...... ..-..+..|+.++.+++.-.+ ..-..+..++++|+.+.+..++- +..-...+ .+++.|+.+++.++...
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 222111 112357889999998885443 33334567889999999998863 32222222 45688999999887643
Q ss_pred ccC-ChhhhhcCCCccEEEccCCCCC-cCC----CccCCCCCCCcEEEcccCcCCCCCchhhhhCCCCCcEEEccCCc
Q 004640 273 GHI-PVEIGDVLPSLYVFNISMNALD-GSI----PSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 344 (740)
Q Consensus 273 ~~~-~~~~~~~~~~L~~L~L~~n~i~-~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 344 (740)
-.. -......++.|+.+.++++..- ... ...-..+..|+.+.|+++.....-.......+++|+.+++-.++
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 111 1223445789999999988543 221 12224578899999999976522223344567888888877665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=4.9e-06 Score=78.63 Aligned_cols=103 Identities=27% Similarity=0.345 Sum_probs=83.7
Q ss_pred cCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccccCCCCCCCEEEcCCCcccccC-cccccCCCCCCE
Q 004640 18 THLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKGLRKLRYLSLSGIKLNHSI-LSSLTVFSSLRE 96 (740)
Q Consensus 18 ~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 96 (740)
+.+.+++.|+.=++.+. .|. ....++.|++|.||-|+|+++.++..+.+|++|.|..|.|.++. ...+.++|+|++
T Consensus 16 sdl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34667889999999988 454 57889999999999999999999999999999999999997653 345788999999
Q ss_pred EECCCCCCCCcCCc----cccCCCCCCCEEE
Q 004640 97 LYLDDTGFKGTLDI----REFDSFNNLEVLD 123 (740)
Q Consensus 97 L~L~~n~i~~~~~~----~~~~~l~~L~~L~ 123 (740)
|.|..|...+..+. ..+.-+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999977654432 2356677887775
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.0012 Score=68.23 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=17.4
Q ss_pred CCCCEEEccCCeeeecCCccccCCCCCCEEEccCC
Q 004640 452 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 486 (740)
Q Consensus 452 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 486 (740)
++|++|.+++|.--...|+.+ .++|+.|++++|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 356666666643222444333 245666666666
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00053 Score=65.15 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=77.7
Q ss_pred cchhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcC--Cc-ccc-cCCCCCCCEEEcCCCccccc-Cccc
Q 004640 13 ILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI--DK-FVV-SKGLRKLRYLSLSGIKLNHS-ILSS 87 (740)
Q Consensus 13 ~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i--~~-~~~-~~~l~~L~~L~Ls~n~l~~~-~~~~ 87 (740)
+..-+..+..|+.|++.+..++ .+. .|-.+++|+.|.+|.|.. .. +.. ...+++|++|++++|+|... .-..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 3444556778888888888877 443 477899999999999943 32 222 35669999999999998742 1233
Q ss_pred ccCCCCCCEEECCCCCCCCcCCc---cccCCCCCCCEEEcC
Q 004640 88 LTVFSSLRELYLDDTGFKGTLDI---REFDSFNNLEVLDMS 125 (740)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~---~~~~~l~~L~~L~Ls 125 (740)
++.+.+|..|++.+|..++ +.. ..|..+++|++||-.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 5667888899999998764 322 357778899988754
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.00016 Score=68.70 Aligned_cols=92 Identities=26% Similarity=0.276 Sum_probs=73.9
Q ss_pred eecCCCCCCcccchhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc---cCCCCCCCEEEcCCC
Q 004640 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV---SKGLRKLRYLSLSGI 78 (740)
Q Consensus 2 LdLs~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~---~~~l~~L~~L~Ls~n 78 (740)
|++-+|.+..| ....+++.|++|.||-|+|+ .+. .|..|++|+.|+|..|.|.++.. +.++++|+.|.|..|
T Consensus 24 LNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 24 LNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 44556666653 23468999999999999999 665 59999999999999999998887 689999999999998
Q ss_pred cccccCc-----ccccCCCCCCEEE
Q 004640 79 KLNHSIL-----SSLTVFSSLRELY 98 (740)
Q Consensus 79 ~l~~~~~-----~~~~~l~~L~~L~ 98 (740)
.=.+..+ ..+..+|+|+.||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 7655433 2456788998885
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.48 E-value=0.0026 Score=70.42 Aligned_cols=107 Identities=27% Similarity=0.233 Sum_probs=43.7
Q ss_pred CCCCCEEEcCCCCCCCc--cChhhcCCCCCCCEEECCCC-c-CCcccc-----cCCCCCCCEEEcCCCc-ccccCccccc
Q 004640 20 LSSLRSLNLNGNSLEGS--IDVKEFDSLRDLEELDIGEN-K-IDKFVV-----SKGLRKLRYLSLSGIK-LNHSILSSLT 89 (740)
Q Consensus 20 l~~L~~L~Ls~n~i~~~--i~~~~f~~l~~L~~L~Ls~n-~-i~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 89 (740)
++.|+.|.+..+.-... +. .....+++|+.|+++++ . +..... ...+++|+.|+++++. +++..-..++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45555555555431101 11 23445555555555542 1 111110 2344555555555554 3333323332
Q ss_pred C-CCCCCEEECCCCC-CCCcCCccccCCCCCCCEEEcCCC
Q 004640 90 V-FSSLRELYLDDTG-FKGTLDIREFDSFNNLEVLDMSYN 127 (740)
Q Consensus 90 ~-l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~Ls~n 127 (740)
. +++|++|.+.++. +++..-.....+++.|++|+++++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 2 4555555544443 232111112233444555554433
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.20 E-value=0.021 Score=32.13 Aligned_cols=11 Identities=64% Similarity=0.676 Sum_probs=4.5
Q ss_pred ceEecCCcccC
Q 004640 570 QTLNLSYNNLT 580 (740)
Q Consensus 570 ~~L~Ls~N~l~ 580 (740)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444443
No 71
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.84 E-value=0.044 Score=68.89 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=49.9
Q ss_pred eccCcccCccCCccccCCCCCCEEecCCCccccccC-cccccccccCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 004640 597 DLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL-EWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNER 675 (740)
Q Consensus 597 ~Ls~N~i~~~~~~~~~~l~~L~~l~l~~N~l~~~~~-~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~ 675 (740)
||++|+|+.+.+..|..+++|+.|+|++|||.|.|. .|+..|..-...... ......|..|...++..+.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~------~~~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR------QPEAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc------CCcccCCCCChHHCCCCcccCC
Confidence 688999998888899999999999999999999985 344433221111110 0011258888877777666554
Q ss_pred C
Q 004640 676 D 676 (740)
Q Consensus 676 ~ 676 (740)
.
T Consensus 75 ~ 75 (2740)
T TIGR00864 75 L 75 (2740)
T ss_pred c
Confidence 4
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.42 E-value=0.04 Score=30.98 Aligned_cols=12 Identities=58% Similarity=0.888 Sum_probs=6.7
Q ss_pred CCEEEcCCCccc
Q 004640 70 LRYLSLSGIKLN 81 (740)
Q Consensus 70 L~~L~Ls~n~l~ 81 (740)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.55 E-value=0.12 Score=30.43 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=18.1
Q ss_pred CCCCcEEEcccCcCCCCCchhhhh
Q 004640 307 MKFLQLLDLSNNQLTGEIPEHLAV 330 (740)
Q Consensus 307 l~~L~~L~L~~n~l~~~~~~~~~~ 330 (740)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 88887764
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.55 E-value=0.12 Score=30.43 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=18.1
Q ss_pred CCCCcEEEcccCcCCCCCchhhhh
Q 004640 307 MKFLQLLDLSNNQLTGEIPEHLAV 330 (740)
Q Consensus 307 l~~L~~L~L~~n~l~~~~~~~~~~ 330 (740)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 88887764
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.47 E-value=0.14 Score=30.17 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=17.0
Q ss_pred CCCCCEEEcCCCCCCCccChhhcC
Q 004640 20 LSSLRSLNLNGNSLEGSIDVKEFD 43 (740)
Q Consensus 20 l~~L~~L~Ls~n~i~~~i~~~~f~ 43 (740)
+++|++|+|++|.|+ .+|+++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 457788888888887 77776665
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.47 E-value=0.14 Score=30.17 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=17.0
Q ss_pred CCCCCEEEcCCCCCCCccChhhcC
Q 004640 20 LSSLRSLNLNGNSLEGSIDVKEFD 43 (740)
Q Consensus 20 l~~L~~L~Ls~n~i~~~i~~~~f~ 43 (740)
+++|++|+|++|.|+ .+|+++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 457788888888887 77776665
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.14 E-value=0.098 Score=27.24 Aligned_cols=8 Identities=38% Similarity=0.704 Sum_probs=2.9
Q ss_pred CEEECCCC
Q 004640 49 EELDIGEN 56 (740)
Q Consensus 49 ~~L~Ls~n 56 (740)
+.|+|++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.94 E-value=0.15 Score=26.58 Aligned_cols=12 Identities=75% Similarity=0.963 Sum_probs=4.0
Q ss_pred CcEEEcccCcCC
Q 004640 310 LQLLDLSNNQLT 321 (740)
Q Consensus 310 L~~L~L~~n~l~ 321 (740)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.58 E-value=0.0046 Score=57.53 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=42.3
Q ss_pred chhccCCCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc-cCCCCCCCEEEcCCCcccccCcccccCCC
Q 004640 14 LSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIKLNHSILSSLTVFS 92 (740)
Q Consensus 14 ~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 92 (740)
-..+..+...+.||++.|.+. ... ..|+-++.|..|+++.|.+.-.+. +..+..+..+++..|..+. .|.++...+
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCccccccC
Confidence 334444555555555555554 333 345555555555555555444443 3444444444544444442 344444555
Q ss_pred CCCEEECCCCC
Q 004640 93 SLRELYLDDTG 103 (740)
Q Consensus 93 ~L~~L~L~~n~ 103 (740)
+++.+++..|.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 55555544444
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.74 E-value=0.0039 Score=67.15 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=20.5
Q ss_pred CCcCEEEcccCcCcccCChhhh---hcCCCccEEEccCCCCCc
Q 004640 259 KRLGILDISNNNIRGHIPVEIG---DVLPSLYVFNISMNALDG 298 (740)
Q Consensus 259 ~~L~~L~ls~n~l~~~~~~~~~---~~~~~L~~L~L~~n~i~~ 298 (740)
..+++++++.|.++..-..... ..++.++++.++.|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4555666666666533222211 113466666666666653
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.19 E-value=0.0089 Score=55.66 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=76.8
Q ss_pred ccChhhcCCCCCCCEEECCCCcCCcccc-cCCCCCCCEEEcCCCcccccCcccccCCCCCCEEECCCCCCCCcCCccccC
Q 004640 36 SIDVKEFDSLRDLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFD 114 (740)
Q Consensus 36 ~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 114 (740)
.+|.-.+.....-+.||++.|++..+.. ++.+..|..||++.|.+. ..|..+.....++++++..|..+ ..|. .+.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence 5665567777888999999998877766 788889999999999987 46778888899999999999888 7887 899
Q ss_pred CCCCCCEEEcCCCCCC
Q 004640 115 SFNNLEVLDMSYNKID 130 (740)
Q Consensus 115 ~l~~L~~L~Ls~n~i~ 130 (740)
..+.++++++.++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999998888877643
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.47 E-value=0.0064 Score=65.55 Aligned_cols=175 Identities=22% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCEEEcCCCCCCCc----cChhhcCCCCCCCEEECCCCcCCcccc------cCCC-CCCCEEEcCCCcccccC----ccc
Q 004640 23 LRSLNLNGNSLEGS----IDVKEFDSLRDLEELDIGENKIDKFVV------SKGL-RKLRYLSLSGIKLNHSI----LSS 87 (740)
Q Consensus 23 L~~L~Ls~n~i~~~----i~~~~f~~l~~L~~L~Ls~n~i~~~~~------~~~l-~~L~~L~Ls~n~l~~~~----~~~ 87 (740)
+..|.|.+|.+... +. .++...++|..|+++.|.+..... +... ..|++|++..|.+++.. ...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~-~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELA-QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHH-HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 55566666665421 11 344555666666666666653332 2222 44556666666655432 233
Q ss_pred ccCCCCCCEEECCCCCCCCc----CCc---cccCCCCCCCEEEcCCCCCCCC------------CC-CcEEEccCCCCcC
Q 004640 88 LTVFSSLRELYLDDTGFKGT----LDI---REFDSFNNLEVLDMSYNKIDNL------------VV-PQELRLSDNHFRI 147 (740)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~----~~~---~~~~~l~~L~~L~Ls~n~i~~~------------~~-L~~L~l~~n~~~~ 147 (740)
+.....++.++++.|.+... ++. +.+....++++|.++++.++.. +. +.++++..|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44456666666666655310 000 0122345666666666665533 22 4556666666542
Q ss_pred cCC---hhhhccC-CCCcEEEccCCcccccccccccCcCCC-ccccEEEecCCCCCC
Q 004640 148 PIS---LEPLFNH-SRLKIFHAKNNQMNAEITESHSLTAPN-FQLQSLSLSSSYGDG 199 (740)
Q Consensus 148 ~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 199 (740)
... ...+... ..++.+++..|.+.............. .+++.+.+ ..+.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l-~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSL-SNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhc-ccCccc
Confidence 111 1112223 456777777777766554443333322 26777777 444443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=0.12 Score=47.50 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=46.0
Q ss_pred CCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc---c-CCCCCCCEEEcCCCc-ccccCcccccCCCCCCE
Q 004640 22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV---S-KGLRKLRYLSLSGIK-LNHSILSSLTVFSSLRE 96 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~---~-~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 96 (740)
.++.+|-++..|. .+.-.-+..++.++.|.+.+|.--+--. + +..++|+.|++++|. |++..-..+.++++|+.
T Consensus 102 ~IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4566777777776 3443556666777777777664221111 2 245667777776553 55555555556666666
Q ss_pred EECCCC
Q 004640 97 LYLDDT 102 (740)
Q Consensus 97 L~L~~n 102 (740)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 655543
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.09 E-value=0.36 Score=53.25 Aligned_cols=12 Identities=8% Similarity=-0.083 Sum_probs=5.7
Q ss_pred cCCCCeEECcCC
Q 004640 367 LTWLIHIIMPEN 378 (740)
Q Consensus 367 l~~L~~L~l~~n 378 (740)
+++|++|+++++
T Consensus 294 ~~~L~~L~l~~c 305 (482)
T KOG1947|consen 294 CPSLRELDLSGC 305 (482)
T ss_pred cCcccEEeeecC
Confidence 444445554444
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.54 E-value=0.2 Score=46.14 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=56.6
Q ss_pred eecCCCCCCcccchhccCCCCCCEEEcCCCCCCCccChhhcC----CCCCCCEEECCCCc-CCcccc--cCCCCCCCEEE
Q 004640 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD----SLRDLEELDIGENK-IDKFVV--SKGLRKLRYLS 74 (740)
Q Consensus 2 LdLs~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~f~----~l~~L~~L~Ls~n~-i~~~~~--~~~l~~L~~L~ 74 (740)
+|-++..|..+.-+.+.+++.++.|.+.+|.- +++..+. -.++|+.|+|++|. ||+... +..+++|+.|.
T Consensus 106 VDAsds~I~~eGle~L~~l~~i~~l~l~~ck~---~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 106 VDASDSSIMYEGLEHLRDLRSIKSLSLANCKY---FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EecCCchHHHHHHHHHhccchhhhheeccccc---hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 46677788888888899999999999999873 3333332 45899999999885 666544 67888888888
Q ss_pred cCCCc
Q 004640 75 LSGIK 79 (740)
Q Consensus 75 Ls~n~ 79 (740)
+.+-.
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 86543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.47 E-value=0.33 Score=27.85 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=7.4
Q ss_pred CCCCEEEcCCCccccc
Q 004640 68 RKLRYLSLSGIKLNHS 83 (740)
Q Consensus 68 ~~L~~L~Ls~n~l~~~ 83 (740)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555555555555443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.59 E-value=2.1 Score=25.16 Aligned_cols=14 Identities=64% Similarity=0.992 Sum_probs=6.4
Q ss_pred CCCEEECCCCcCCc
Q 004640 47 DLEELDIGENKIDK 60 (740)
Q Consensus 47 ~L~~L~Ls~n~i~~ 60 (740)
+|+.|+|++|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 44444444444443
No 88
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=72.75 E-value=4.1 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=13.0
Q ss_pred EEeeehhhhHHHHHHHHHHhhhchhhh
Q 004640 686 FITFTTSYVIVIFAIVIILYVNSYWRR 712 (740)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (740)
.+++++++-+++++++.++.++.+||+
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEec
Confidence 445555555555444444444444444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.82 E-value=2.9 Score=44.76 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=7.1
Q ss_pred CCCEEecCCCcccc
Q 004640 616 TLEVFSVAYNNLSG 629 (740)
Q Consensus 616 ~L~~l~l~~N~l~~ 629 (740)
.|++|-+.|||+..
T Consensus 271 ~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 271 PLEELVLEGNPLCT 284 (585)
T ss_pred CHHHeeecCCcccc
Confidence 34455555555543
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=61.55 E-value=4 Score=52.53 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=33.4
Q ss_pred ecCCCccccccCcccccccccCcccccCCCCCCCCCC
Q 004640 621 SVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 657 (740)
Q Consensus 621 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 657 (740)
||++|+|+..-+..|..+..+..+.+.+|||.|+|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6899999988888788888899999999999999986
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.83 E-value=3.9 Score=43.90 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=19.6
Q ss_pred CCCCCCCEEECCCCcCCccccc----CCCCCCCEEEcCCC
Q 004640 43 DSLRDLEELDIGENKIDKFVVS----KGLRKLRYLSLSGI 78 (740)
Q Consensus 43 ~~l~~L~~L~Ls~n~i~~~~~~----~~l~~L~~L~Ls~n 78 (740)
.+.+.+..++|++|++..+..+ ..-++|++|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3455566666666665554442 23455555555555
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.88 E-value=6.1 Score=23.20 Aligned_cols=18 Identities=56% Similarity=0.750 Sum_probs=11.4
Q ss_pred CCCcEEEcccCcCCCCCch
Q 004640 308 KFLQLLDLSNNQLTGEIPE 326 (740)
Q Consensus 308 ~~L~~L~L~~n~l~~~~~~ 326 (740)
++|+.|+.++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35666777777776 5554
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.09 E-value=23 Score=37.47 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=32.3
Q ss_pred cCcEEEccCCcCCCCCccc---ccCcccCceEecCCcccCcc----CCccccCCCCCCEEeccCcccC
Q 004640 544 LLSGLYLSCNKLIGHIPPQ---IGNLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKLN 604 (740)
Q Consensus 544 ~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~i~ 604 (740)
-+..+.++.+.+....... ...-+.+.+|++++|..... +|.+..--..++.+..+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3566777777766332222 33445677777777766533 3333333445555555555443
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.73 E-value=8 Score=23.12 Aligned_cols=13 Identities=54% Similarity=0.721 Sum_probs=6.9
Q ss_pred CCCEEeccCcccC
Q 004640 592 HIESLDLSYNKLN 604 (740)
Q Consensus 592 ~L~~L~Ls~N~i~ 604 (740)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 95
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=53.84 E-value=27 Score=28.42 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=9.3
Q ss_pred EEeeehhhhHHHHHHHHHHh
Q 004640 686 FITFTTSYVIVIFAIVIILY 705 (740)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~ 705 (740)
++++++++++++.+++.+++
T Consensus 68 iagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEEEEeehhhHHHHHHHHHh
Confidence 44555554544444444433
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=53.15 E-value=78 Score=33.78 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCCCCEEEcCCCCCCCccChhhcCCCCCCCEEECCCCcCCcccc-----cCCCCCCCEEEcCCCcccccCcccccC---C
Q 004640 20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV-----SKGLRKLRYLSLSGIKLNHSILSSLTV---F 91 (740)
Q Consensus 20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l 91 (740)
-+.++++|++.|.+....+. .+.. .---++++.|..+.-.. -.+=..+.+++|+.|...+.+|..... -
T Consensus 164 npr~r~~dls~npi~dkvpi-hl~~--p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPI-HLPQ--PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred cchhhhhccCCCcccccCCc-cccC--CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 35677888888887644331 1110 01114444444332111 123344566666666655544443322 2
Q ss_pred CCCCEEECCCCCC
Q 004640 92 SSLRELYLDDTGF 104 (740)
Q Consensus 92 ~~L~~L~L~~n~i 104 (740)
..+++++.+...+
T Consensus 241 ~vl~~ld~s~tgi 253 (553)
T KOG4242|consen 241 LVLFKLDRSTTGI 253 (553)
T ss_pred hhhhccccccccc
Confidence 3444555554443
No 97
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=46.58 E-value=13 Score=32.64 Aligned_cols=16 Identities=13% Similarity=-0.120 Sum_probs=9.1
Q ss_pred EEEeeehhhhHHHHHH
Q 004640 685 FFITFTTSYVIVIFAI 700 (740)
Q Consensus 685 ~~~~~~~~~~~~~~~~ 700 (740)
+++++++++.+.++++
T Consensus 50 IVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG 65 (154)
T ss_pred EEEEEEecccHHHHHH
Confidence 4667766655544443
No 98
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=38.82 E-value=37 Score=31.80 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=12.3
Q ss_pred eEEEeeehhhhHHHHHHHHHHhh
Q 004640 684 SFFITFTTSYVIVIFAIVIILYV 706 (740)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~ 706 (740)
.++++++.|++++++++++++++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHH
Confidence 44555555655555555555444
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=35.15 E-value=20 Score=31.33 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=3.8
Q ss_pred HHHhhhchhh
Q 004640 702 IILYVNSYWR 711 (740)
Q Consensus 702 ~~~~~~~~~~ 711 (740)
+++++++|||
T Consensus 77 ~lv~~~kRkr 86 (146)
T PF15102_consen 77 CLVIYYKRKR 86 (146)
T ss_pred HheeEEeecc
Confidence 3333333333
No 100
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=34.38 E-value=18 Score=30.48 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHhhhchhhhHHHHHH
Q 004640 691 TSYVIVIFAIVIILYVNSYWRRRWFYFV 718 (740)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (740)
+++.+++++.++++++++|+|++.....
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~~ 134 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPLQ 134 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCchh
Confidence 4444555555566777777776655443
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.73 E-value=30 Score=20.05 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=5.8
Q ss_pred CCCCEEECCCC
Q 004640 46 RDLEELDIGEN 56 (740)
Q Consensus 46 ~~L~~L~Ls~n 56 (740)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555554
No 102
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.72 E-value=25 Score=35.45 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=11.0
Q ss_pred ehhhhHHHHHHHHHHhhhchhhhH
Q 004640 690 TTSYVIVIFAIVIILYVNSYWRRR 713 (740)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~ 713 (740)
++++++++++|++++|+..||||+
T Consensus 261 SiiaIliIVLIMvIIYLILRYRRK 284 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445554445443
No 103
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=30.46 E-value=66 Score=21.10 Aligned_cols=7 Identities=29% Similarity=0.767 Sum_probs=3.0
Q ss_pred hchhhhH
Q 004640 707 NSYWRRR 713 (740)
Q Consensus 707 ~~~~~~~ 713 (740)
+++|..|
T Consensus 30 YRKw~aR 36 (43)
T PF08114_consen 30 YRKWQAR 36 (43)
T ss_pred HHHHHHH
Confidence 3444444
No 104
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.55 E-value=21 Score=30.48 Aligned_cols=12 Identities=0% Similarity=-0.039 Sum_probs=4.6
Q ss_pred eeehhhhHHHHH
Q 004640 688 TFTTSYVIVIFA 699 (740)
Q Consensus 688 ~~~~~~~~~~~~ 699 (740)
+++++++++++.
T Consensus 68 ~Ii~gv~aGvIg 79 (122)
T PF01102_consen 68 GIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhHHHHHHHHH
Confidence 333344433333
No 105
>PF15050 SCIMP: SCIMP protein
Probab=25.44 E-value=28 Score=28.93 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=11.9
Q ss_pred ehhhhHHHHHHHHHHhhhchhhhH
Q 004640 690 TTSYVIVIFAIVIILYVNSYWRRR 713 (740)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~ 713 (740)
++.++++-+++.+++|+..+|..|
T Consensus 13 AVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 13 AVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555655555544
No 106
>PTZ00046 rifin; Provisional
Probab=24.40 E-value=36 Score=34.89 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=17.4
Q ss_pred EeeehhhhHHHHHHHHHHhhhchhhhHHHH
Q 004640 687 ITFTTSYVIVIFAIVIILYVNSYWRRRWFY 716 (740)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (740)
+..+++++++++++++++|+..||||+...
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKKKM 346 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 344455555555566666776667666443
No 107
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=24.35 E-value=48 Score=28.08 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=0.0
Q ss_pred HhhhchhhhHHH
Q 004640 704 LYVNSYWRRRWF 715 (740)
Q Consensus 704 ~~~~~~~~~~~~ 715 (740)
+++.+++|++.|
T Consensus 99 lv~rrcrrr~~~ 110 (129)
T PF12191_consen 99 LVWRRCRRREKF 110 (129)
T ss_dssp ------------
T ss_pred HHHhhhhccccC
Confidence 443333444433
No 108
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.10 E-value=1e+02 Score=22.49 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=10.9
Q ss_pred EEeeehhhhHHHHHHHHHHhhhchhhh
Q 004640 686 FITFTTSYVIVIFAIVIILYVNSYWRR 712 (740)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (740)
.|..+++..+++++++.-++++.||++
T Consensus 14 lIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 14 LIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred eEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333334433444444443
No 109
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.20 E-value=40 Score=34.46 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=16.6
Q ss_pred eeehhhhHHHHHHHHHHhhhchhhhHHHH
Q 004640 688 TFTTSYVIVIFAIVIILYVNSYWRRRWFY 716 (740)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (740)
.++++++++++++++++|+..||||+...
T Consensus 313 iaSiIAIvvIVLIMvIIYLILRYRRKKKM 341 (353)
T TIGR01477 313 IASIIAILIIVLIMVIIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 34445555555555666666666666443
No 110
>PTZ00370 STEVOR; Provisional
Probab=20.67 E-value=39 Score=33.28 Aligned_cols=7 Identities=0% Similarity=0.344 Sum_probs=2.5
Q ss_pred eehhhhH
Q 004640 689 FTTSYVI 695 (740)
Q Consensus 689 ~~~~~~~ 695 (740)
+++.+.|
T Consensus 257 ygiaalv 263 (296)
T PTZ00370 257 YGIAALV 263 (296)
T ss_pred cHHHHHH
Confidence 3333333
Done!